fig|6666666.148647.peg.1 CDS NC_010729.1 1 1422 1 + 1422 Chromosomal replication initiator protein DnaA Cell Division Subsystem including YidCD;
DNA replication cluster 1
fig|6666666.148647.peg.2 CDS NC_010729.1 1435 2007 1 + 573 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.148647.peg.3 CDS NC_010729.1 3148 2009 -1 - 1140 membrane protein, putative - none -
fig|6666666.148647.peg.4 CDS NC_010729.1 3108 3812 3 + 705 NAD-dependent protein deacetylase of SIR2 family Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate;
Redox-dependent regulation of nucleus processes
fig|6666666.148647.peg.5 CDS NC_010729.1 5041 3887 -1 - 1155 FIG00935710: hypothetical protein - none -
fig|6666666.148647.peg.6 CDS NC_010729.1 6473 5094 -2 - 1380 Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps Multidrug Resistance Efflux Pumps;
Riboflavin, FMN and FAD metabolism in plants
fig|6666666.148647.peg.7 CDS NC_010729.1 7154 7300 2 + 147 hypothetical protein - none -
fig|6666666.148647.peg.8 CDS NC_010729.1 7400 9979 2 + 2580 ATP-dependent Clp protease ATP-binding subunit ClpA Proteolysis in bacteria, ATP-dependent;
Ribosome recycling related cluster
fig|6666666.148647.peg.9 CDS NC_010729.1 10119 13130 3 + 3012 Beta-N-acetylglucosaminidase - none -
fig|6666666.148647.peg.10 CDS NC_010729.1 13178 14206 2 + 1029 L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) Cobalamin synthesis;
Coenzyme B12 biosynthesis
fig|6666666.148647.peg.11 CDS NC_010729.1 14216 14986 2 + 771 FIG00936262: hypothetical protein - none -
fig|6666666.148647.peg.12 CDS NC_010729.1 15615 15463 -3 - 153 hypothetical protein - none -
fig|6666666.148647.peg.13 CDS NC_010729.1 15571 16920 1 + 1350 Two-component system response regulator - none -
fig|6666666.148647.peg.14 CDS NC_010729.1 16930 18267 1 + 1338 putative two-component system sensor histidine kinase - none -
fig|6666666.148647.peg.15 CDS NC_010729.1 18271 20517 1 + 2247 FIG00935570: hypothetical protein - none -
fig|6666666.148647.peg.16 CDS NC_010729.1 20602 21306 1 + 705 transcriptional regulator, MarR family - none -
fig|6666666.148647.peg.17 CDS NC_010729.1 22293 21292 -3 - 1002 tRNA dihydrouridine synthase B (EC 1.-.-.-) tRNA modification Bacteria
fig|6666666.148647.peg.18 CDS NC_010729.1 23900 22290 -2 - 1611 Sulfate permease - none -
fig|6666666.148647.peg.19 CDS NC_010729.1 25072 25608 1 + 537 Redox-sensitive transcriptional regulator (AT-rich DNA-binding protein) Oxidative stress
fig|6666666.148647.peg.20 CDS NC_010729.1 25800 26336 3 + 537 Fumarylacetoacetate hydrolase family protein Gentisate degradation;
Salicylate and gentisate catabolism
fig|6666666.148647.peg.21 CDS NC_010729.1 26349 29825 3 + 3477 FIG00936082: hypothetical protein - none -
fig|6666666.148647.peg.22 CDS NC_010729.1 29901 31076 3 + 1176 FIG00897671: hypothetical protein - none -
fig|6666666.148647.peg.23 CDS NC_010729.1 31083 31571 3 + 489 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis;
Stationary phase repair cluster
fig|6666666.148647.peg.24 CDS NC_010729.1 32216 31674 -2 - 543 TRNA/rRNA methyltransferase - none -
fig|6666666.148647.peg.25 CDS NC_010729.1 32524 32369 -1 - 156 hypothetical protein - none -
fig|6666666.148647.peg.26 CDS NC_010729.1 33069 33545 3 + 477 Cytidine deaminase (EC 3.5.4.5) pyrimidine conversions;
tRNA modification Bacteria
fig|6666666.148647.peg.27 CDS NC_010729.1 33765 34850 3 + 1086 Mobile element protein - none -
fig|6666666.148647.peg.28 CDS NC_010729.1 34875 35024 3 + 150 Calcium-transporting ATPase - none -
fig|6666666.148647.peg.29 CDS NC_010729.1 36043 35420 -1 - 624 FIG00936133: hypothetical protein - none -
fig|6666666.148647.peg.30 CDS NC_010729.1 38673 36142 -3 - 2532 Beta-mannosidase (EC 3.2.1.25) Mannose Metabolism
fig|6666666.148647.peg.31 CDS NC_010729.1 40055 38757 -2 - 1299 DNA recombination protein RmuC DNA repair, bacterial
fig|6666666.148647.peg.32 CDS NC_010729.1 40103 40276 2 + 174 hypothetical protein - none -
fig|6666666.148647.peg.33 CDS NC_010729.1 40999 40685 -1 - 315 Thioredoxin CBSS-315749.4.peg.3658
fig|6666666.148647.peg.34 CDS NC_010729.1 44734 41048 -1 - 3687 DNA polymerase III alpha subunit (EC 2.7.7.7) - none -
fig|6666666.148647.peg.35 CDS NC_010729.1 45013 45378 1 + 366 LSU ribosomal protein L19p Ribosome LSU bacterial
fig|6666666.148647.peg.36 CDS NC_010729.1 45846 46055 3 + 210 hypothetical protein - none -
fig|6666666.148647.peg.37 CDS NC_010729.1 46294 46130 -1 - 165 hypothetical protein - none -
fig|6666666.148647.peg.38 CDS NC_010729.1 46617 47897 3 + 1281 Serine hydroxymethyltransferase (EC 2.1.2.1) 5-FCL-like protein;
Glycine Biosynthesis;
Glycine and Serine Utilization;
Serine Biosynthesis
fig|6666666.148647.peg.39 CDS NC_010729.1 48129 50387 3 + 2259 Beta-hexosaminidase (EC 3.2.1.52) - none -
fig|6666666.148647.peg.40 CDS NC_010729.1 51051 53105 3 + 2055 Chaperone protein HtpG Protein chaperones
fig|6666666.148647.peg.41 CDS NC_010729.1 54142 53288 -1 - 855 Phosphatidate cytidylyltransferase (EC 2.7.7.41) - none -
fig|6666666.148647.peg.42 CDS NC_010729.1 56192 54171 -2 - 2022 Cell division protein FtsH (EC 3.4.24.-) Bacterial Cell Division;
Cell division-ribosomal stress proteins cluster;
Folate biosynthesis cluster
fig|6666666.148647.peg.43 CDS NC_010729.1 57496 56393 -1 - 1104 GTP-binding and nucleic acid-binding protein YchF Universal GTPases
fig|6666666.148647.peg.44 CDS NC_010729.1 58549 58815 1 + 267 FIG00936644: hypothetical protein - none -
fig|6666666.148647.peg.45 CDS NC_010729.1 58828 59046 1 + 219 hypothetical protein - none -
fig|6666666.148647.peg.46 CDS NC_010729.1 59059 59475 1 + 417 FIG00937340: hypothetical protein - none -
fig|6666666.148647.peg.47 CDS NC_010729.1 59497 60027 1 + 531 Antirestriction protein ArdA - none -
fig|6666666.148647.peg.48 CDS NC_010729.1 60044 61318 2 + 1275 FIG00937820: hypothetical protein - none -
fig|6666666.148647.peg.49 CDS NC_010729.1 61345 61599 1 + 255 FIG00935801: hypothetical protein - none -
fig|6666666.148647.peg.50 CDS NC_010729.1 61604 61834 2 + 231 FIG00935811: hypothetical protein - none -
fig|6666666.148647.peg.51 CDS NC_010729.1 62098 63318 1 + 1221 hypothetical protein - none -
fig|6666666.148647.peg.52 CDS NC_010729.1 64300 63785 -1 - 516 lysozyme-related protein - none -
fig|6666666.148647.peg.53 CDS NC_010729.1 64745 64284 -2 - 462 Conjugative transposon protein TraQ Conjugative transposon, Bacteroidales
fig|6666666.148647.peg.54 CDS NC_010729.1 65624 64770 -2 - 855 Conjugative transposon primase TraP @ DNA primase (EC 2.7.7.-) CBSS-349161.4.peg.2417;
Conjugative transposon, Bacteroidales;
Macromolecular synthesis operon
fig|6666666.148647.peg.55 CDS NC_010729.1 66208 65624 -1 - 585 Conjugative transposon protein TraO Conjugative transposon, Bacteroidales
fig|6666666.148647.peg.56 CDS NC_010729.1 67130 66210 -2 - 921 Conjugative transposon protein TraN Conjugative transposon, Bacteroidales
fig|6666666.148647.peg.57 CDS NC_010729.1 68536 67169 -1 - 1368 Conjugative transposon protein TraM Conjugative transposon, Bacteroidales
fig|6666666.148647.peg.58 CDS NC_010729.1 68819 68487 -2 - 333 Conjugative transposon protein TraL Conjugative transposon, Bacteroidales
fig|6666666.148647.peg.59 CDS NC_010729.1 69439 68816 -1 - 624 Conjugative transposon protein TraK Conjugative transposon, Bacteroidales
fig|6666666.148647.peg.60 CDS NC_010729.1 70535 69459 -2 - 1077 Conjugative transposon protein TraJ Conjugative transposon, Bacteroidales
fig|6666666.148647.peg.61 CDS NC_010729.1 71149 70538 -1 - 612 Conjugative transposon protein TraI Conjugative transposon, Bacteroidales
fig|6666666.148647.peg.62 CDS NC_010729.1 73803 71302 -3 - 2502 Conjugative transposon protein TraG Conjugative transposon, Bacteroidales
fig|6666666.148647.peg.63 CDS NC_010729.1 74177 73800 -2 - 378 Conjugative transposon protein TraF Conjugative transposon, Bacteroidales
fig|6666666.148647.peg.64 CDS NC_010729.1 74481 74182 -3 - 300 Conjugative transposon protein TraE Conjugative transposon, Bacteroidales
fig|6666666.148647.peg.65 CDS NC_010729.1 75244 74657 -1 - 588 Conjugative transposon protein TraD Conjugative transposon, Bacteroidales
fig|6666666.148647.peg.66 CDS NC_010729.1 75972 75232 -3 - 741 Conjugative transposon protein TraA Conjugative transposon, Bacteroidales
fig|6666666.148647.peg.67 CDS NC_010729.1 76592 76002 -2 - 591 FIG00936139: hypothetical protein - none -
fig|6666666.148647.peg.68 CDS NC_010729.1 76942 76589 -1 - 354 Conjugative transposon protein TraB Conjugative transposon, Bacteroidales
fig|6666666.148647.peg.69 CDS NC_010729.1 77399 76968 -2 - 432 Conjugative transposon protein TraB Conjugative transposon, Bacteroidales
fig|6666666.148647.peg.70 CDS NC_010729.1 78165 77383 -3 - 783 Conjugative transposon protein TraA Conjugative transposon, Bacteroidales
fig|6666666.148647.peg.71 CDS NC_010729.1 79012 78776 -1 - 237 hypothetical protein - none -
fig|6666666.148647.peg.72 CDS NC_010729.1 79011 79367 3 + 357 hypothetical protein clusted with conjugative transposons, BF0131 Conjugative transposon, Bacteroidales
fig|6666666.148647.peg.73 CDS NC_010729.1 79394 80587 2 + 1194 Putative conjugative transposon mobilization protein BF0132 Conjugative transposon, Bacteroidales
fig|6666666.148647.peg.74 CDS NC_010729.1 80770 82779 1 + 2010 Putative mobilization protein BF0133 Conjugative transposon, Bacteroidales
fig|6666666.148647.peg.75 CDS NC_010729.1 82878 83033 3 + 156 hypothetical protein - none -
fig|6666666.148647.peg.76 CDS NC_010729.1 83084 83287 2 + 204 hypothetical protein - none -
fig|6666666.148647.peg.77 CDS NC_010729.1 83323 84354 1 + 1032 protein of unknown function DUF1016 - none -
fig|6666666.148647.peg.78 CDS NC_010729.1 84642 84397 -3 - 246 tetracycline resistance element mobilization regulatory protein rteC - none -
fig|6666666.148647.peg.79 CDS NC_010729.1 84901 84746 -1 - 156 hypothetical protein - none -
fig|6666666.148647.peg.80 CDS NC_010729.1 86329 85010 -1 - 1320 Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps Multidrug Resistance Efflux Pumps;
Riboflavin, FMN and FAD metabolism in plants
fig|6666666.148647.peg.81 CDS NC_010729.1 87313 86465 -1 - 849 transcriptional regulator, AraC family - none -
fig|6666666.148647.peg.82 CDS NC_010729.1 87598 88992 1 + 1395 FIG00936597: hypothetical protein - none -
fig|6666666.148647.peg.83 CDS NC_010729.1 89027 91156 2 + 2130 DNA topoisomerase III, Bacteroidales-type (EC 5.99.1.2) DNA topoisomerases, Type I, ATP-independent
fig|6666666.148647.peg.84 CDS NC_010729.1 91296 91727 3 + 432 hypothetical protein - none -
fig|6666666.148647.peg.85 CDS NC_010729.1 91714 97200 1 + 5487 putative DNA methylase - none -
fig|6666666.148647.peg.86 CDS NC_010729.1 99167 97257 -2 - 1911 FIG01220381: hypothetical protein - none -
fig|6666666.148647.peg.87 CDS NC_010729.1 99849 99529 -3 - 321 FIG00938987: hypothetical protein - none -
fig|6666666.148647.peg.88 CDS NC_010729.1 100186 99833 -1 - 354 FIG00936922: hypothetical protein - none -
fig|6666666.148647.peg.89 CDS NC_010729.1 100407 100685 3 + 279 FIG00938698: hypothetical protein - none -
fig|6666666.148647.peg.90 CDS NC_010729.1 100723 101025 1 + 303 FIG00936566: hypothetical protein - none -
fig|6666666.148647.peg.91 CDS NC_010729.1 101440 101075 -1 - 366 FIG00936719: hypothetical protein - none -
fig|6666666.148647.peg.92 CDS NC_010729.1 102552 101455 -3 - 1098 Integrase - none -
fig|6666666.148647.peg.93 CDS NC_010729.1 104424 103084 -3 - 1341 Aspartokinase (EC 2.7.2.4) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch;
Threonine and Homoserine Biosynthesis
fig|6666666.148647.peg.94 CDS NC_010729.1 105182 104442 -2 - 741 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) Bacterial Cell Division
fig|6666666.148647.peg.95 CDS NC_010729.1 105575 106588 2 + 1014 Peptidase, M23/M37 family - none -
fig|6666666.148647.peg.96 CDS NC_010729.1 106598 107746 2 + 1149 Diaminopimelate decarboxylase (EC 4.1.1.20) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.148647.peg.97 CDS NC_010729.1 107781 108623 3 + 843 1,4-dihydroxy-2-naphthoate polyprenyltransferase (EC 2.5.1.74) - none -
fig|6666666.148647.peg.98 CDS NC_010729.1 108715 109095 1 + 381 Transcriptional regulator, MecI family - none -
fig|6666666.148647.peg.99 CDS NC_010729.1 109130 110446 2 + 1317 Ferric siderophore transport system, periplasmic binding protein TonB Hemin transport system;
Ton and Tol transport systems
fig|6666666.148647.peg.100 CDS NC_010729.1 112432 111347 -1 - 1086 Mobile element protein - none -
fig|6666666.148647.peg.101 CDS NC_010729.1 112571 112798 2 + 228 Mobile element protein - none -
fig|6666666.148647.peg.102 CDS NC_010729.1 113293 114081 1 + 789 Mobile element protein - none -
fig|6666666.148647.peg.103 CDS NC_010729.1 114157 114441 1 + 285 Mobile element protein - none -
fig|6666666.148647.peg.104 CDS NC_010729.1 114859 114428 -1 - 432 Mobile element protein - none -
fig|6666666.148647.peg.105 CDS NC_010729.1 115443 115327 -3 - 117 FIG00936395: hypothetical protein - none -
fig|6666666.148647.peg.106 CDS NC_010729.1 115892 115776 -2 - 117 ISPg6, transposase - none -
fig|6666666.148647.peg.107 CDS NC_010729.1 116653 116468 -1 - 186 partial transposase Orf1 in ISPg5 - none -
fig|6666666.148647.peg.108 CDS NC_010729.1 116849 116703 -2 - 147 hypothetical protein - none -
fig|6666666.148647.peg.109 CDS NC_010729.1 117168 118523 3 + 1356 Na(+)-translocating NADH-quinone reductase subunit A (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.148647.peg.110 CDS NC_010729.1 118695 119753 3 + 1059 Na(+)-translocating NADH-quinone reductase subunit B (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.148647.peg.111 CDS NC_010729.1 119777 120511 2 + 735 Na(+)-translocating NADH-quinone reductase subunit C (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.148647.peg.112 CDS NC_010729.1 120517 121146 1 + 630 Na(+)-translocating NADH-quinone reductase subunit D (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.148647.peg.113 CDS NC_010729.1 121201 121800 1 + 600 Na(+)-translocating NADH-quinone reductase subunit E (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.148647.peg.114 CDS NC_010729.1 121819 123057 1 + 1239 Na(+)-translocating NADH-quinone reductase subunit F (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.148647.peg.115 CDS NC_010729.1 123044 123157 2 + 114 hypothetical protein - none -
fig|6666666.148647.peg.116 CDS NC_010729.1 123989 124471 2 + 483 FIG00936159: hypothetical protein - none -
fig|6666666.148647.peg.117 CDS NC_010729.1 124527 126272 3 + 1746 FIG00936390: hypothetical protein - none -
fig|6666666.148647.peg.118 CDS NC_010729.1 126292 127167 1 + 876 outer membrane lipoprotein Omp28 - none -
fig|6666666.148647.peg.119 CDS NC_010729.1 127188 127907 3 + 720 FIG00936543: hypothetical protein - none -
fig|6666666.148647.peg.120 CDS NC_010729.1 128126 129085 2 + 960 Hydroxypyruvate reductase (EC 1.1.1.81) Glycerate metabolism;
Glycolate, glyoxylate interconversions
fig|6666666.148647.peg.121 CDS NC_010729.1 129124 130413 1 + 1290 Predicted glucose transporter in maltodextrin utilization gene cluster Maltose and Maltodextrin Utilization
fig|6666666.148647.peg.122 CDS NC_010729.1 131103 130930 -3 - 174 hypothetical protein - none -
fig|6666666.148647.peg.123 CDS NC_010729.1 133024 131555 -1 - 1470 FIG00935587: hypothetical protein - none -
fig|6666666.148647.peg.124 CDS NC_010729.1 133628 133035 -2 - 594 hypothetical protein - none -
fig|6666666.148647.peg.125 CDS NC_010729.1 133946 133815 -2 - 132 Mobile element protein - none -
fig|6666666.148647.peg.126 CDS NC_010729.1 134726 134082 -2 - 645 Mobile element protein - none -
fig|6666666.148647.peg.127 CDS NC_010729.1 135167 134772 -2 - 396 Mobile element protein - none -
fig|6666666.148647.peg.128 CDS NC_010729.1 135914 135438 -2 - 477 FIG00935874: hypothetical protein - none -
fig|6666666.148647.peg.129 CDS NC_010729.1 137203 135926 -1 - 1278 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.148647.peg.130 CDS NC_010729.1 138275 137217 -2 - 1059 Biotin synthase (EC 2.8.1.6) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.148647.peg.131 CDS NC_010729.1 139883 138390 -2 - 1494 Di-/tripeptide transporter Proton-dependent Peptide Transporters
fig|6666666.148647.peg.132 CDS NC_010729.1 141048 139957 -3 - 1092 FIG00936535: hypothetical protein - none -
fig|6666666.148647.peg.133 CDS NC_010729.1 142175 142062 -2 - 114 hypothetical protein - none -
fig|6666666.148647.peg.134 CDS NC_010729.1 142131 143114 3 + 984 Tryptophanyl-tRNA synthetase (EC 6.1.1.2) tRNA aminoacylation, Trp
fig|6666666.148647.peg.135 CDS NC_010729.1 143169 143588 3 + 420 hypothetical protein - none -
fig|6666666.148647.peg.136 CDS NC_010729.1 143588 144061 2 + 474 LSU m3Psi1915 methyltransferase RlmH RNA methylation;
Ribosome biogenesis bacterial;
tRNA modification Bacteria
fig|6666666.148647.peg.137 CDS NC_010729.1 144039 145181 3 + 1143 Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11) / Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) Peptide methionine sulfoxide reductase;
Peptide methionine sulfoxide reductase
fig|6666666.148647.peg.138 CDS NC_010729.1 145238 146422 2 + 1185 FIG00406664: hypothetical protein - none -
fig|6666666.148647.peg.139 CDS NC_010729.1 146829 147737 3 + 909 Cobalt-zinc-cadmium resistance protein Cobalt-zinc-cadmium resistance
fig|6666666.148647.peg.140 CDS NC_010729.1 147780 148133 3 + 354 Dihydroneopterin aldolase (EC 4.1.2.25) Folate Biosynthesis;
Folate biosynthesis cluster
fig|6666666.148647.peg.141 CDS NC_010729.1 149262 148204 -3 - 1059 FIG00935540: hypothetical protein - none -
fig|6666666.148647.peg.142 CDS NC_010729.1 154397 149877 -2 - 4521 FIG00935920: hypothetical protein - none -
fig|6666666.148647.peg.143 CDS NC_010729.1 154588 154445 -1 - 144 hypothetical protein - none -
fig|6666666.148647.peg.144 CDS NC_010729.1 154660 154773 1 + 114 hypothetical protein - none -
fig|6666666.148647.peg.145 CDS NC_010729.1 157173 154846 -3 - 2328 FIG00935923: hypothetical protein - none -
fig|6666666.148647.peg.146 CDS NC_010729.1 161971 157181 -1 - 4791 FIG00935594: hypothetical protein - none -
fig|6666666.148647.peg.147 CDS NC_010729.1 163018 162077 -1 - 942 Ribose-phosphate pyrophosphokinase (EC 2.7.6.1) A Gammaproteobacteria Cluster Relating to Translation;
De Novo Purine Biosynthesis;
Pentose phosphate pathway
fig|6666666.148647.peg.148 CDS NC_010729.1 163191 163015 -3 - 177 FIG00935630: hypothetical protein - none -
fig|6666666.148647.peg.149 CDS NC_010729.1 164488 163205 -1 - 1284 ATP-dependent RNA helicase - none -
fig|6666666.148647.peg.150 CDS NC_010729.1 166063 165089 -1 - 975 FIG00935807: hypothetical protein - none -
fig|6666666.148647.peg.151 CDS NC_010729.1 167858 166236 -2 - 1623 FIG00936385: hypothetical protein - none -
fig|6666666.148647.peg.152 CDS NC_010729.1 168174 168040 -3 - 135 hypothetical protein - none -
fig|6666666.148647.peg.153 CDS NC_010729.1 168433 168275 -1 - 159 hypothetical protein - none -
fig|6666666.148647.peg.154 CDS NC_010729.1 168799 169359 1 + 561 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) ABC transporter alkylphosphonate (TC 3.A.1.9.1)
fig|6666666.148647.peg.155 CDS NC_010729.1 169400 169534 2 + 135 hypothetical protein - none -
fig|6666666.148647.peg.156 CDS NC_010729.1 169561 170238 1 + 678 FIG00935760: hypothetical protein - none -
fig|6666666.148647.peg.157 CDS NC_010729.1 171469 170357 -1 - 1113 Thiazole biosynthesis protein ThiH Thiamin biosynthesis
fig|6666666.148647.peg.158 CDS NC_010729.1 172261 171482 -1 - 780 Thiazole biosynthesis protein ThiG Thiamin biosynthesis
fig|6666666.148647.peg.159 CDS NC_010729.1 174263 172320 -2 - 1944 Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) / Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) 5-FCL-like protein;
Thiamin biosynthesis
fig|6666666.148647.peg.160 CDS NC_010729.1 176023 174260 -1 - 1764 Thiamin biosynthesis protein ThiC Thiamin biosynthesis
fig|6666666.148647.peg.161 CDS NC_010729.1 176293 176093 -1 - 201 Sulfur carrier protein ThiS Thiamin biosynthesis
fig|6666666.148647.peg.162 CDS NC_010729.1 176434 176619 1 + 186 FIG00935635: hypothetical protein - none -
fig|6666666.148647.peg.163 CDS NC_010729.1 176666 177436 2 + 771 FIG00935635: hypothetical protein - none -
fig|6666666.148647.peg.164 CDS NC_010729.1 177858 178004 3 + 147 hypothetical protein - none -
fig|6666666.148647.peg.165 CDS NC_010729.1 178160 178294 2 + 135 hypothetical protein - none -
fig|6666666.148647.peg.166 CDS NC_010729.1 178372 178500 1 + 129 hypothetical protein - none -
fig|6666666.148647.peg.167 CDS NC_010729.1 178748 178924 2 + 177 hypothetical protein - none -
fig|6666666.148647.peg.168 CDS NC_010729.1 179015 179143 2 + 129 hypothetical protein - none -
fig|6666666.148647.peg.169 CDS NC_010729.1 179855 179295 -2 - 561 SSU ribosomal protein S16p Ribosome SSU bacterial
fig|6666666.148647.peg.170 CDS NC_010729.1 180644 181630 2 + 987 oxidoreductase, Gfo/Idh/MocA family - none -
fig|6666666.148647.peg.171 CDS NC_010729.1 182557 181748 -1 - 810 metallo-beta-lactamase family protein - none -
fig|6666666.148647.peg.172 CDS NC_010729.1 183623 182610 -2 - 1014 L-asparaginase I, cytoplasmic (EC 3.5.1.1) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.148647.peg.173 CDS NC_010729.1 183988 183701 -1 - 288 Mobile element protein - none -
fig|6666666.148647.peg.174 CDS NC_010729.1 184112 183942 -2 - 171 hypothetical protein - none -
fig|6666666.148647.peg.175 CDS NC_010729.1 184289 185299 2 + 1011 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) Glycolysis and Gluconeogenesis;
Pyridoxin (Vitamin B6) Biosynthesis;
Redox-dependent regulation of nucleus processes
fig|6666666.148647.peg.176 CDS NC_010729.1 186386 185439 -2 - 948 transcriptional regulator, AraC family - none -
fig|6666666.148647.peg.177 CDS NC_010729.1 186489 186358 -3 - 132 hypothetical protein - none -
fig|6666666.148647.peg.178 CDS NC_010729.1 187172 186498 -2 - 675 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC - none -
fig|6666666.148647.peg.179 CDS NC_010729.1 187612 187169 -1 - 444 hypothetical protein - none -
fig|6666666.148647.peg.180 CDS NC_010729.1 188180 188743 2 + 564 FIG00936405: hypothetical protein - none -
fig|6666666.148647.peg.181 CDS NC_010729.1 188769 190241 3 + 1473 60 kDa protein - none -
fig|6666666.148647.peg.182 CDS NC_010729.1 190297 191448 1 + 1152 similar to GB:M15518, GB:D01096, GB:A01465, GB:A04051, GB:A07197, GB:V00570, GB:K03021, GB:L00153, GB:L00141, GB:L00142, GB:L00143, GB:L00144, GB:L00145, GB:L00146, GB:L00147, GB:L00148, GB:L00149, GB:L00150, GB:L00151, GB:L00152, GB:S77144, SP:P00750, PID:190032, PID:2285954, PID:339818, PID:339834, PID:339839, PID:340177, PID:345129, PID:37244, PID:412165, PID:441174, and PID:575655; identified by sequence similarity; putative - none -
fig|6666666.148647.peg.183 CDS NC_010729.1 191587 191943 1 + 357 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) ABC transporter alkylphosphonate (TC 3.A.1.9.1)
fig|6666666.148647.peg.184 CDS NC_010729.1 192172 192498 1 + 327 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) ABC transporter alkylphosphonate (TC 3.A.1.9.1)
fig|6666666.148647.peg.185 CDS NC_010729.1 192653 193873 2 + 1221 lipoprotein, putative - none -
fig|6666666.148647.peg.186 CDS NC_010729.1 193888 195900 1 + 2013 FIG00935539: hypothetical protein - none -
fig|6666666.148647.peg.187 CDS NC_010729.1 195897 197549 3 + 1653 FIG00936358: hypothetical protein - none -
fig|6666666.148647.peg.188 CDS NC_010729.1 197721 197572 -3 - 150 hypothetical protein - none -
fig|6666666.148647.peg.189 CDS NC_010729.1 198082 198633 1 + 552 COG1399 protein in cluster with ribosomal protein L32p, Bacteroidetes/Chlorobi subfamily - none -
fig|6666666.148647.peg.190 CDS NC_010729.1 198709 198825 1 + 117 LSU ribosomal protein L32p Ribosome LSU bacterial
fig|6666666.148647.peg.191 CDS NC_010729.1 199005 200012 3 + 1008 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) Fatty Acid Biosynthesis FASII
fig|6666666.148647.peg.192 CDS NC_010729.1 200091 200990 3 + 900 GTP-binding protein Era Bacterial Cell Division;
Glycyl-tRNA synthetase containing cluster;
Universal GTPases
fig|6666666.148647.peg.193 CDS NC_010729.1 201053 202366 2 + 1314 GTP-binding protein EngA Universal GTPases
fig|6666666.148647.peg.194 CDS NC_010729.1 202417 205716 1 + 3300 membrane protein, putative - none -
fig|6666666.148647.peg.195 CDS NC_010729.1 205717 206364 1 + 648 Polysaccharide deacetylase - none -
fig|6666666.148647.peg.196 CDS NC_010729.1 206510 207076 2 + 567 putative peptidase - none -
fig|6666666.148647.peg.197 CDS NC_010729.1 207832 207275 -1 - 558 Xanthine phosphoribosyltransferase (EC 2.4.2.22) Purine conversions;
Xanthine Metabolism in Bacteria
fig|6666666.148647.peg.198 CDS NC_010729.1 209230 207893 -1 - 1338 Xanthine permease Purine Utilization;
Xanthine Metabolism in Bacteria
fig|6666666.148647.peg.199 CDS NC_010729.1 210113 209391 -2 - 723 FIG00935770: hypothetical protein - none -
fig|6666666.148647.peg.200 CDS NC_010729.1 211627 210122 -1 - 1506 FIG00936147: hypothetical protein - none -
fig|6666666.148647.peg.201 CDS NC_010729.1 213288 213103 -3 - 186 FIG00935778: hypothetical protein - none -
fig|6666666.148647.peg.202 CDS NC_010729.1 214214 213315 -2 - 900 FIG00936165: hypothetical protein - none -
fig|6666666.148647.peg.203 CDS NC_010729.1 214997 214251 -2 - 747 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) Cluster containing Glutathione synthetase;
Heat shock dnaK gene cluster extended;
RNA methylation
fig|6666666.148647.peg.204 CDS NC_010729.1 215327 216328 2 + 1002 leucine aminopeptidase precursor - none -
fig|6666666.148647.peg.205 CDS NC_010729.1 216352 216777 1 + 426 Sulfur acceptor protein SufE for iron-sulfur cluster assembly Iron-sulfur cluster assembly
fig|6666666.148647.peg.206 CDS NC_010729.1 216781 218178 1 + 1398 Protoporphyrinogen IX oxidase, aerobic, HemY (EC 1.3.3.4) Heme and Siroheme Biosynthesis
fig|6666666.148647.peg.207 CDS NC_010729.1 219931 219032 -1 - 900 Transcriptional regulator, AraC family - none -
fig|6666666.148647.peg.208 CDS NC_010729.1 221079 219928 -3 - 1152 Lipid-A-disaccharide synthase (EC 2.4.1.182) KDO2-Lipid A biosynthesis;
Llipid A biosynthesis cluster
fig|6666666.148647.peg.209 CDS NC_010729.1 221886 221116 -3 - 771 5-nucleotidase SurE (EC 3.1.3.5) Housecleaning nucleoside triphosphate pyrophosphatases;
Stationary phase repair cluster
fig|6666666.148647.peg.210 CDS NC_010729.1 222440 221883 -2 - 558 peptidyl-prolyl cis-trans isomerase, FKBP-type - none -
fig|6666666.148647.peg.211 CDS NC_010729.1 223984 222437 -1 - 1548 Glycyl-tRNA synthetase (EC 6.1.1.14) Glycyl-tRNA synthetase containing cluster;
tRNA aminoacylation, Gly
fig|6666666.148647.peg.212 CDS NC_010729.1 224297 225382 2 + 1086 Mobile element protein - none -
fig|6666666.148647.peg.213 CDS NC_010729.1 225757 226788 1 + 1032 FIG00935838: hypothetical protein - none -
fig|6666666.148647.peg.214 CDS NC_010729.1 228027 226942 -3 - 1086 Mobile element protein - none -
fig|6666666.148647.peg.215 CDS NC_010729.1 228173 228556 2 + 384 FIG00936319: hypothetical protein - none -
fig|6666666.148647.peg.216 CDS NC_010729.1 228975 228667 -3 - 309 hypothetical protein - none -
fig|6666666.148647.peg.217 CDS NC_010729.1 229253 229140 -2 - 114 hypothetical protein - none -
fig|6666666.148647.peg.218 CDS NC_010729.1 230928 231056 3 + 129 hypothetical protein - none -
fig|6666666.148647.peg.219 CDS NC_010729.1 235012 234854 -1 - 159 hypothetical protein - none -
fig|6666666.148647.peg.220 CDS NC_010729.1 235110 236195 3 + 1086 Mobile element protein - none -
fig|6666666.148647.peg.221 CDS NC_010729.1 236220 236396 3 + 177 Calcium-transporting ATPase - none -
fig|6666666.148647.peg.222 CDS NC_010729.1 236503 237003 1 + 501 Mobile element protein - none -
fig|6666666.148647.peg.223 CDS NC_010729.1 237092 237517 2 + 426 Mobile element protein - none -
fig|6666666.148647.peg.224 CDS NC_010729.1 237991 240018 1 + 2028 DNA topoisomerase III (EC 5.99.1.2) DNA processing cluster;
DNA topoisomerases, Type I, ATP-independent
fig|6666666.148647.peg.225 CDS NC_010729.1 240928 240698 -1 - 231 Mobile element protein - none -
fig|6666666.148647.peg.226 CDS NC_010729.1 241404 242510 3 + 1107 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) - none -
fig|6666666.148647.peg.227 CDS NC_010729.1 242776 243966 1 + 1191 UDP-N-acetyl-D-mannosaminuronate dehydrogenase - none -
fig|6666666.148647.peg.228 CDS NC_010729.1 244149 244262 3 + 114 hypothetical protein - none -
fig|6666666.148647.peg.229 CDS NC_010729.1 244252 245238 1 + 987 probable glycosyltransferase - none -
fig|6666666.148647.peg.230 CDS NC_010729.1 245208 246413 3 + 1206 hypothetical protein - none -
fig|6666666.148647.peg.231 CDS NC_010729.1 246423 247481 3 + 1059 Glycosyltransferase - none -
fig|6666666.148647.peg.232 CDS NC_010729.1 247494 248828 3 + 1335 capsular polysaccharide biosynthesis protein Rhamnose containing glycans
fig|6666666.148647.peg.233 CDS NC_010729.1 250156 251340 1 + 1185 FIG00936240: hypothetical protein - none -
fig|6666666.148647.peg.234 CDS NC_010729.1 251310 252401 3 + 1092 Dolichol-phosphate mannosyltransferase (EC 2.4.1.83) in lipid-linked oligosaccharide synthesis cluster - none -
fig|6666666.148647.peg.235 CDS NC_010729.1 252443 253141 2 + 699 Probable UDP-N-acetyl-D-mannosaminuronic acid transferase (EC 2.4.1.-) - none -
fig|6666666.148647.peg.236 CDS NC_010729.1 253147 254307 1 + 1161 UDP-N-acetylglucosamine 2-epimerase (EC 5.1.3.14) - none -
fig|6666666.148647.peg.237 CDS NC_010729.1 254613 254879 3 + 267 DNA-binding protein HU-beta DNA structural proteins, bacterial
fig|6666666.148647.peg.238 CDS NC_010729.1 255081 255650 3 + 570 FIG00936171: hypothetical protein - none -
fig|6666666.148647.peg.239 CDS NC_010729.1 256330 255710 -1 - 621 FIG000605: protein co-occurring with transport systems (COG1739) Transport system clustering with HemG
fig|6666666.148647.peg.240 CDS NC_010729.1 256882 256334 -1 - 549 FIG00935729: hypothetical protein - none -
fig|6666666.148647.peg.241 CDS NC_010729.1 257991 256879 -3 - 1113 Alkaline phosphodiesterase I (EC 3.1.4.1) / Nucleotide pyrophosphatase (EC 3.6.1.9) Purine conversions
fig|6666666.148647.peg.242 CDS NC_010729.1 258298 258023 -1 - 276 FIG00935494: hypothetical protein - none -
fig|6666666.148647.peg.243 CDS NC_010729.1 258611 259648 2 + 1038 Ferrochelatase, protoheme ferro-lyase (EC 4.99.1.1) Heme and Siroheme Biosynthesis
fig|6666666.148647.peg.244 CDS NC_010729.1 259655 260629 2 + 975 FIG00936315: hypothetical protein - none -
fig|6666666.148647.peg.245 CDS NC_010729.1 260646 261794 3 + 1149 FIG00936601: hypothetical protein - none -
fig|6666666.148647.peg.246 CDS NC_010729.1 262676 261930 -2 - 747 Phosphoglycerate mutase (EC 5.4.2.1) Glycolysis and Gluconeogenesis;
Phosphoglycerate mutase protein family
fig|6666666.148647.peg.247 CDS NC_010729.1 264270 262960 -3 - 1311 CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase - none -
fig|6666666.148647.peg.248 CDS NC_010729.1 265772 264267 -2 - 1506 FIG00935555: hypothetical protein - none -
fig|6666666.148647.peg.249 CDS NC_010729.1 267143 265791 -2 - 1353 Mg/Co/Ni transporter MgtE / CBS domain Magnesium transport
fig|6666666.148647.peg.250 CDS NC_010729.1 267951 267175 -3 - 777 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase (EC 2.1.1.182) ECSIG4-SIG7;
RNA methylation;
Ribosome biogenesis bacterial
fig|6666666.148647.peg.251 CDS NC_010729.1 268082 269131 2 + 1050 putative dolichol-P-glucose synthetase - none -
fig|6666666.148647.peg.252 CDS NC_010729.1 269162 270616 2 + 1455 Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3) Dipeptidases (EC 3.4.13.-);
Recycling of Peptidoglycan Amino Acids
fig|6666666.148647.peg.253 CDS NC_010729.1 270683 271612 2 + 930 Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39) Fatty Acid Biosynthesis FASII
fig|6666666.148647.peg.254 CDS NC_010729.1 273148 271793 -1 - 1356 Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-) Murein Hydrolases
fig|6666666.148647.peg.255 CDS NC_010729.1 273865 273158 -1 - 708 FIG00937393: hypothetical protein - none -
fig|6666666.148647.peg.256 CDS NC_010729.1 274754 273885 -2 - 870 Chromosome (plasmid) partitioning protein ParB / Stage 0 sporulation protein J Bacterial Cytoskeleton;
Bacterial Cytoskeleton;
Cell Division Subsystem including YidCD;
RNA modification and chromosome partitioning cluster
fig|6666666.148647.peg.257 CDS NC_010729.1 275538 274762 -3 - 777 Chromosome (plasmid) partitioning protein ParA / Sporulation initiation inhibitor protein Soj Bacterial Cell Division;
Bacterial Cytoskeleton;
Bacterial Cytoskeleton;
Cell Division Subsystem including YidCD;
RNA modification and chromosome partitioning cluster
fig|6666666.148647.peg.258 CDS NC_010729.1 276632 275754 -2 - 879 N-carbamoylputrescine amidase (3.5.1.53) Arginine and Ornithine Degradation;
Polyamine Metabolism
fig|6666666.148647.peg.259 CDS NC_010729.1 277675 276650 -1 - 1026 Agmatine deiminase (EC 3.5.3.12) Arginine and Ornithine Degradation;
Polyamine Metabolism
fig|6666666.148647.peg.260 CDS NC_010729.1 278345 277959 -2 - 387 putative protein-export membrane protein - none -
fig|6666666.148647.peg.261 CDS NC_010729.1 279028 278348 -1 - 681 FIG00936113: hypothetical protein - none -
fig|6666666.148647.peg.262 CDS NC_010729.1 279607 279068 -1 - 540 FIG00936439: hypothetical protein - none -
fig|6666666.148647.peg.263 CDS NC_010729.1 280853 279594 -2 - 1260 Transcriptional regulator - none -
fig|6666666.148647.peg.264 CDS NC_010729.1 282143 280875 -2 - 1269 FIG00936180: hypothetical protein - none -
fig|6666666.148647.peg.265 CDS NC_010729.1 283484 282180 -2 - 1305 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase Methylthiotransferases;
Ribosomal protein S12p Asp methylthiotransferase
fig|6666666.148647.peg.266 CDS NC_010729.1 284434 283481 -1 - 954 Signal recognition particle receptor protein FtsY (=alpha subunit) (TC 3.A.5.1.1) Bacterial Cell Division;
Bacterial signal recognition particle (SRP);
Universal GTPases
fig|6666666.148647.peg.267 CDS NC_010729.1 285597 284461 -3 - 1137 Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-) Polyamine Metabolism
fig|6666666.148647.peg.268 CDS NC_010729.1 287370 285607 -3 - 1764 Aspartyl-tRNA synthetase (EC 6.1.1.12) tRNA aminoacylation, Asp and Asn
fig|6666666.148647.peg.269 CDS NC_010729.1 288792 287800 -3 - 993 Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster;
Riboflavin synthesis cluster
fig|6666666.148647.peg.270 CDS NC_010729.1 288817 289698 1 + 882 Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2 A Gammaproteobacteria Cluster Relating to Translation;
CBSS-216600.3.peg.802;
Translation termination factors bacterial
fig|6666666.148647.peg.271 CDS NC_010729.1 289695 290180 3 + 486 Regulatory protein RecX DNA repair system including RecA, MutS and a hypothetical protein;
RecA and RecX
fig|6666666.148647.peg.272 CDS NC_010729.1 290164 290904 1 + 741 Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.148647.peg.273 CDS NC_010729.1 293049 291034 -3 - 2016 Endothelin-converting enzyme 1 precursor (EC 3.4.24.71) - none -
fig|6666666.148647.peg.274 CDS NC_010729.1 294024 293122 -3 - 903 hypothetical protein - none -
fig|6666666.148647.peg.275 CDS NC_010729.1 294251 294364 2 + 114 hypothetical protein - none -
fig|6666666.148647.peg.276 CDS NC_010729.1 295025 294444 -2 - 582 RNA polymerase sigma-70 factor, ECF subfamily - none -
fig|6666666.148647.peg.277 CDS NC_010729.1 296775 295174 -3 - 1602 Pyrophosphate-dependent fructose 6-phosphate-1-kinase (EC 2.7.1.90) Glycolysis and Gluconeogenesis
fig|6666666.148647.peg.278 CDS NC_010729.1 297321 297019 -3 - 303 FIG00936587: hypothetical protein - none -
fig|6666666.148647.peg.279 CDS NC_010729.1 297745 297308 -1 - 438 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) Cell division-ribosomal stress proteins cluster;
DNA replication cluster 1;
Heat shock dnaK gene cluster extended
fig|6666666.148647.peg.280 CDS NC_010729.1 298308 297751 -3 - 558 Peptidyl-tRNA hydrolase (EC 3.1.1.29) Cell division-ribosomal stress proteins cluster;
Sporulation-associated proteins with broader functions;
Translation termination factors bacterial
fig|6666666.148647.peg.281 CDS NC_010729.1 299027 298449 -2 - 579 LSU ribosomal protein L25p Ribosome LSU bacterial
fig|6666666.148647.peg.282 CDS NC_010729.1 299637 301679 3 + 2043 Methionyl-tRNA synthetase (EC 6.1.1.10) tRNA aminoacylation, Met
fig|6666666.148647.peg.283 CDS NC_010729.1 301709 303481 2 + 1773 5@1-nucleotidase (EC 3.1.3.5); 2@1,3@1-cyclic-nucleotide 2@1-phosphodiesterase (EC 3.1.4.16); Putative UDP-sugar hydrolase (EC 3.6.1.45) CBSS-226186.1.peg.4416;
Purine conversions;
Purine conversions;
pyrimidine conversions;
pyrimidine conversions
fig|6666666.148647.peg.284 CDS NC_010729.1 303478 304260 1 + 783 exonuclease - none -
fig|6666666.148647.peg.285 CDS NC_010729.1 304218 304349 3 + 132 hypothetical protein - none -
fig|6666666.148647.peg.286 CDS NC_010729.1 304703 304323 -2 - 381 transcriptional regulator, putative - none -
fig|6666666.148647.peg.287 CDS NC_010729.1 307227 304747 -3 - 2481 NADH dehydrogenase (EC 1.6.99.3) Respiratory dehydrogenases 1;
Riboflavin synthesis cluster
fig|6666666.148647.peg.288 CDS NC_010729.1 307424 307239 -2 - 186 NADH dehydrogenase (EC 1.6.99.3) Respiratory dehydrogenases 1;
Riboflavin synthesis cluster
fig|6666666.148647.peg.289 CDS NC_010729.1 308614 310284 1 + 1671 FIG00936212: hypothetical protein - none -
fig|6666666.148647.peg.290 CDS NC_010729.1 310382 311338 2 + 957 FIG00935585: hypothetical protein - none -
fig|6666666.148647.peg.291 CDS NC_010729.1 311801 312979 2 + 1179 lipoprotein, putative - none -
fig|6666666.148647.peg.292 CDS NC_010729.1 312988 313989 1 + 1002 immunoreactive 32 kDa antigen PG49 - none -
fig|6666666.148647.peg.293 CDS NC_010729.1 314073 317825 3 + 3753 FIG00935890: hypothetical protein - none -
fig|6666666.148647.peg.294 CDS NC_010729.1 318767 321877 2 + 3111 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.148647.peg.295 CDS NC_010729.1 321911 323422 2 + 1512 lipoprotein RagB - none -
fig|6666666.148647.peg.296 CDS NC_010729.1 323516 324472 2 + 957 hemagglutinin, putative - none -
fig|6666666.148647.peg.297 CDS NC_010729.1 324678 325841 3 + 1164 FIG00936185: hypothetical protein - none -
fig|6666666.148647.peg.298 CDS NC_010729.1 325879 326043 1 + 165 FIG00936185: hypothetical protein - none -
fig|6666666.148647.peg.299 CDS NC_010729.1 326054 326737 2 + 684 FIG00936563: hypothetical protein - none -
fig|6666666.148647.peg.300 CDS NC_010729.1 326815 327579 1 + 765 Undecaprenyl diphosphate synthase (EC 2.5.1.31) CBSS-83331.1.peg.3039;
Isoprenoid Biosynthesis;
Isoprenoinds for Quinones;
Polyprenyl Diphosphate Biosynthesis
fig|6666666.148647.peg.301 CDS NC_010729.1 327576 330272 3 + 2697 Outer membrane protein assembly factor YaeT precursor Llipid A biosynthesis cluster
fig|6666666.148647.peg.302 CDS NC_010729.1 330329 330853 2 + 525 Outer membrane protein H precursor Llipid A biosynthesis cluster;
Periplasmic Stress Response
fig|6666666.148647.peg.303 CDS NC_010729.1 330888 331379 3 + 492 Outer membrane protein H precursor Llipid A biosynthesis cluster;
Periplasmic Stress Response
fig|6666666.148647.peg.304 CDS NC_010729.1 331708 332286 1 + 579 Rubrerythrin Oxidative stress;
Rubrerythrin
fig|6666666.148647.peg.305 CDS NC_010729.1 332618 335389 2 + 2772 Probable zinc protease pqqL (EC 3.4.99.-) - none -
fig|6666666.148647.peg.306 CDS NC_010729.1 335560 335721 1 + 162 hypothetical protein - none -
fig|6666666.148647.peg.307 CDS NC_010729.1 336239 337081 2 + 843 FIG00936229: hypothetical protein - none -
fig|6666666.148647.peg.308 CDS NC_010729.1 337747 337034 -1 - 714 Putative deoxyribonuclease YjjV Deoxyribose and Deoxynucleoside Catabolism;
YcfH
fig|6666666.148647.peg.309 CDS NC_010729.1 337961 337731 -2 - 231 Protein YidD Cell Division Subsystem including YidCD;
RNA modification cluster
fig|6666666.148647.peg.310 CDS NC_010729.1 338380 337967 -1 - 414 Ribonuclease P protein component (EC 3.1.26.5) Cell Division Subsystem including YidCD;
RNA modification cluster;
tRNA processing
fig|6666666.148647.peg.311 CDS NC_010729.1 339123 338377 -3 - 747 uroporphyrinogen-III synthase HemD, putative - none -
fig|6666666.148647.peg.312 CDS NC_010729.1 339821 339114 -2 - 708 FIG00935602: hypothetical protein - none -
fig|6666666.148647.peg.313 CDS NC_010729.1 340090 339872 -1 - 219 FIG00936334: hypothetical protein - none -
fig|6666666.148647.peg.314 CDS NC_010729.1 341703 340123 -3 - 1581 Peptide chain release factor 3 Translation termination factors bacterial
fig|6666666.148647.peg.315 CDS NC_010729.1 341743 341913 1 + 171 hypothetical protein - none -
fig|6666666.148647.peg.316 CDS NC_010729.1 342110 342895 2 + 786 Formate efflux transporter (TC 2.A.44 family) - none -
fig|6666666.148647.peg.317 CDS NC_010729.1 344798 342990 -2 - 1809 Cobalt-precorrin-6x reductase (EC 1.3.1.54) / Cobalt-precorrin-6 synthase, anaerobic Cobalamin synthesis;
Cobalamin synthesis;
Coenzyme B12 biosynthesis;
Coenzyme B12 biosynthesis
fig|6666666.148647.peg.318 CDS NC_010729.1 346639 344795 -1 - 1845 Cobalamin biosynthesis protein CbiG / Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) Cobalamin synthesis;
Cobalamin synthesis;
Coenzyme B12 biosynthesis;
Coenzyme B12 biosynthesis
fig|6666666.148647.peg.319 CDS NC_010729.1 347894 346653 -2 - 1242 Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) Coenzyme B12 biosynthesis;
Coenzyme B12 biosynthesis
fig|6666666.148647.peg.320 CDS NC_010729.1 349407 347887 -3 - 1521 Cobalt-precorrin-3b C17-methyltransferase / Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) Cobalamin synthesis;
Cobalamin synthesis;
Coenzyme B12 biosynthesis;
Coenzyme B12 biosynthesis
fig|6666666.148647.peg.321 CDS NC_010729.1 349748 349635 -2 - 114 hypothetical protein - none -
fig|6666666.148647.peg.322 CDS NC_010729.1 349842 350342 3 + 501 RNA polymerase sigma-70 factor, ECF subfamily - none -
fig|6666666.148647.peg.323 CDS NC_010729.1 350339 350827 2 + 489 FIG00936592: hypothetical protein - none -
fig|6666666.148647.peg.324 CDS NC_010729.1 350883 351335 3 + 453 FIG00935934: hypothetical protein - none -
fig|6666666.148647.peg.325 CDS NC_010729.1 351369 352262 3 + 894 FIG00936442: hypothetical protein - none -
fig|6666666.148647.peg.326 CDS NC_010729.1 352276 353133 1 + 858 FIG00935824: hypothetical protein - none -
fig|6666666.148647.peg.327 CDS NC_010729.1 353401 353258 -1 - 144 Calcium-transporting ATPase - none -
fig|6666666.148647.peg.328 CDS NC_010729.1 354511 353426 -1 - 1086 Mobile element protein - none -
fig|6666666.148647.peg.329 CDS NC_010729.1 356379 355912 -3 - 468 DNA-binding protein, histone-like family - none -
fig|6666666.148647.peg.330 CDS NC_010729.1 357174 356908 -3 - 267 FIG00936583: hypothetical protein - none -
fig|6666666.148647.peg.331 CDS NC_010729.1 357671 357180 -2 - 492 putative DNA polymerase III epsilon chain - none -
fig|6666666.148647.peg.332 CDS NC_010729.1 358313 357675 -2 - 639 Multiple antibiotic resistance protein marC - none -
fig|6666666.148647.peg.333 CDS NC_010729.1 361187 358494 -2 - 2694 FIG00935601: hypothetical protein - none -
fig|6666666.148647.peg.334 CDS NC_010729.1 362634 361249 -3 - 1386 DNA repair protein RadA DNA repair, bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.148647.peg.335 CDS NC_010729.1 363606 362680 -3 - 927 NG,NG-dimethylarginine dimethylaminohydrolase 1 (EC 3.5.3.18) Dimethylarginine metabolism
fig|6666666.148647.peg.336 CDS NC_010729.1 364085 364747 2 + 663 Transaldolase (EC 2.2.1.2) Pentose phosphate pathway
fig|6666666.148647.peg.337 CDS NC_010729.1 364990 366042 1 + 1053 alternate gene name: yzbB - none -
fig|6666666.148647.peg.338 CDS NC_010729.1 368586 366121 -3 - 2466 zinc carboxypeptidase, putative - none -
fig|6666666.148647.peg.339 CDS NC_010729.1 370030 369407 -1 - 624 immunoreactive 23 kDa antigen PG66 - none -
fig|6666666.148647.peg.340 CDS NC_010729.1 370725 370525 -3 - 201 transposase in ISPg1 - none -
fig|6666666.148647.peg.341 CDS NC_010729.1 370835 370948 2 + 114 hypothetical protein - none -
fig|6666666.148647.peg.342 CDS NC_010729.1 370966 372567 1 + 1602 carboxyl-terminal protease - none -
fig|6666666.148647.peg.343 CDS NC_010729.1 372639 374159 3 + 1521 FIG00936169: hypothetical protein - none -
fig|6666666.148647.peg.344 CDS NC_010729.1 374193 374861 3 + 669 Uracil-DNA glycosylase, family 1 DNA Repair Base Excision;
Uracil-DNA glycosylase
fig|6666666.148647.peg.345 CDS NC_010729.1 375509 375336 -2 - 174 hypothetical protein - none -
fig|6666666.148647.peg.346 CDS NC_010729.1 376618 375803 -1 - 816 5@1-nucleotidase YjjG (EC 3.1.3.5) Housecleaning nucleoside triphosphate pyrophosphatases
fig|6666666.148647.peg.347 CDS NC_010729.1 377534 376767 -2 - 768 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) ABC transporter alkylphosphonate (TC 3.A.1.9.1)
fig|6666666.148647.peg.348 CDS NC_010729.1 378367 377666 -1 - 702 rRNA small subunit methyltransferase I 16S rRNA modification within P site of ribosome;
Heat shock dnaK gene cluster extended
fig|6666666.148647.peg.349 CDS NC_010729.1 378859 378383 -1 - 477 hypothetical protein - none -
fig|6666666.148647.peg.350 CDS NC_010729.1 379021 379182 1 + 162 hypothetical protein - none -
fig|6666666.148647.peg.351 CDS NC_010729.1 380291 379179 -2 - 1113 UspA - none -
fig|6666666.148647.peg.352 CDS NC_010729.1 380662 380456 -1 - 207 FIG00935945: hypothetical protein - none -
fig|6666666.148647.peg.353 CDS NC_010729.1 380782 380913 1 + 132 hypothetical protein - none -
fig|6666666.148647.peg.354 CDS NC_010729.1 381219 380917 -3 - 303 Translation initiation factor SUI1-related protein Translation initiation factors bacterial
fig|6666666.148647.peg.355 CDS NC_010729.1 383178 381346 -3 - 1833 Pyruvate carboxylase (EC 6.4.1.1) / Biotin carboxyl carrier protein Fatty Acid Biosynthesis FASII
fig|6666666.148647.peg.356 CDS NC_010729.1 383488 383312 -1 - 177 hypothetical protein - none -
fig|6666666.148647.peg.357 CDS NC_010729.1 383654 383794 2 + 141 hypothetical protein - none -
fig|6666666.148647.peg.358 CDS NC_010729.1 384064 384522 1 + 459 FIG000325: clustered with transcription termination protein NusA NusA-TFII Cluster;
Transcription factors bacterial
fig|6666666.148647.peg.359 CDS NC_010729.1 384569 385903 2 + 1335 Transcription termination protein NusA NusA-TFII Cluster;
Transcription factors bacterial
fig|6666666.148647.peg.360 CDS NC_010729.1 385999 388938 1 + 2940 Translation initiation factor 2 CBSS-138119.3.peg.2719;
NusA-TFII Cluster;
Translation initiation factors bacterial;
Universal GTPases
fig|6666666.148647.peg.361 CDS NC_010729.1 388966 389457 1 + 492 FIG00935510: hypothetical protein - none -
fig|6666666.148647.peg.362 CDS NC_010729.1 389491 390936 1 + 1446 Iron-sulfur cluster assembly protein SufB Iron-sulfur cluster assembly;
tRNA modification Bacteria
fig|6666666.148647.peg.363 CDS NC_010729.1 390976 391728 1 + 753 Iron-sulfur cluster assembly ATPase protein SufC Iron-sulfur cluster assembly;
tRNA modification Bacteria
fig|6666666.148647.peg.364 CDS NC_010729.1 391735 393078 1 + 1344 Iron-sulfur cluster assembly protein SufD Iron-sulfur cluster assembly;
tRNA modification Bacteria
fig|6666666.148647.peg.365 CDS NC_010729.1 394084 393962 -1 - 123 hypothetical protein - none -
fig|6666666.148647.peg.366 CDS NC_010729.1 394043 395335 2 + 1293 Tyrosyl-tRNA synthetase (EC 6.1.1.1) tRNA aminoacylation, Tyr
fig|6666666.148647.peg.367 CDS NC_010729.1 395421 396422 3 + 1002 Glycosyl transferase, group 2 family protein - none -
fig|6666666.148647.peg.368 CDS NC_010729.1 397491 397291 -3 - 201 transposase in ISPg1 - none -
fig|6666666.148647.peg.369 CDS NC_010729.1 397654 399456 1 + 1803 Arginyl-tRNA synthetase (EC 6.1.1.19) tRNA aminoacylation, Arg
fig|6666666.148647.peg.370 CDS NC_010729.1 399461 400546 2 + 1086 tRNA-specific 2-thiouridylase MnmA RNA methylation
fig|6666666.148647.peg.371 CDS NC_010729.1 400591 401355 1 + 765 Exodeoxyribonuclease III (EC 3.1.11.2) DNA repair, bacterial
fig|6666666.148647.peg.372 CDS NC_010729.1 401428 402354 1 + 927 Hydrogen peroxide-inducible genes activator LysR-family proteins in Escherichia coli;
LysR-family proteins in Salmonella enterica Typhimurium;
Oxidative stress;
Thioredoxin-disulfide reductase
fig|6666666.148647.peg.373 CDS NC_010729.1 402405 402875 3 + 471 Single-stranded DNA-binding protein DNA repair, bacterial;
DNA repair, bacterial RecFOR pathway
fig|6666666.148647.peg.374 CDS NC_010729.1 402893 404221 2 + 1329 Magnesium and cobalt efflux protein CorC CBSS-56780.10.peg.1536;
Copper homeostasis: copper tolerance;
Glycyl-tRNA synthetase containing cluster;
Magnesium transport;
tRNA-methylthiotransferase containing cluster
fig|6666666.148647.peg.375 CDS NC_010729.1 404257 404853 1 + 597 FIG00936244: hypothetical protein - none -
fig|6666666.148647.peg.376 CDS NC_010729.1 405978 405469 -3 - 510 Thioredoxin CBSS-315749.4.peg.3658
fig|6666666.148647.peg.377 CDS NC_010729.1 407243 406116 -2 - 1128 FIG00935709: hypothetical protein - none -
fig|6666666.148647.peg.378 CDS NC_010729.1 407334 408998 3 + 1665 Uridine kinase (EC 2.7.1.48) pyrimidine conversions
fig|6666666.148647.peg.379 CDS NC_010729.1 410086 410904 1 + 819 2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase (EC 2.5.1.55) A Gammaproteobacteria Cluster Relating to Translation;
KDO2-Lipid A biosynthesis
fig|6666666.148647.peg.380 CDS NC_010729.1 411110 412579 2 + 1470 Aspartate ammonia-lyase (EC 4.3.1.1) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.148647.peg.381 CDS NC_010729.1 412719 412585 -3 - 135 hypothetical protein - none -
fig|6666666.148647.peg.382 CDS NC_010729.1 412726 413634 1 + 909 Exopolyphosphatase (EC 3.6.1.11) Phosphate metabolism;
Polyphosphate
fig|6666666.148647.peg.383 CDS NC_010729.1 413631 414665 3 + 1035 FIG00936071: hypothetical protein - none -
fig|6666666.148647.peg.384 CDS NC_010729.1 414732 415511 3 + 780 Glucokinase (EC 2.7.1.2) Glycolysis and Gluconeogenesis
fig|6666666.148647.peg.385 CDS NC_010729.1 415594 415938 1 + 345 Glucokinase (EC 2.7.1.2) Glycolysis and Gluconeogenesis
fig|6666666.148647.peg.386 CDS NC_010729.1 416040 416477 3 + 438 MutT/nudix family protein - none -
fig|6666666.148647.peg.387 CDS NC_010729.1 416474 417385 2 + 912 FIG00936023: hypothetical protein - none -
fig|6666666.148647.peg.388 CDS NC_010729.1 417382 417819 1 + 438 FIG00936714: hypothetical protein - none -
fig|6666666.148647.peg.389 CDS NC_010729.1 418785 417859 -3 - 927 integrase/recombinase XerD - none -
fig|6666666.148647.peg.390 CDS NC_010729.1 418903 419328 1 + 426 3-dehydroquinate dehydratase II (EC 4.2.1.10) Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate);
Quinate degradation
fig|6666666.148647.peg.391 CDS NC_010729.1 419429 420079 2 + 651 O-methyltransferase - none -
fig|6666666.148647.peg.392 CDS NC_010729.1 420161 420664 2 + 504 Thiol peroxidase, Tpx-type (EC 1.11.1.15) Thioredoxin-disulfide reductase
fig|6666666.148647.peg.393 CDS NC_010729.1 421351 420860 -1 - 492 cytidine/deoxycytidylate deaminase family protein( EC:3.5.4.3 ) - none -
fig|6666666.148647.peg.394 CDS NC_010729.1 422248 421385 -1 - 864 FIG00935924: hypothetical protein - none -
fig|6666666.148647.peg.395 CDS NC_010729.1 423676 422258 -1 - 1419 PDZ domain protein - none -
fig|6666666.148647.peg.396 CDS NC_010729.1 424191 423709 -3 - 483 C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS DNA repair system including RecA, MutS and a hypothetical protein;
NAD and NADP cofactor biosynthesis global;
NAD and NADP cofactor biosynthesis global;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster
fig|6666666.148647.peg.397 CDS NC_010729.1 425240 424191 -2 - 1050 TsaD/Kae1/Qri7 protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Macromolecular synthesis operon;
YgjD and YeaZ
fig|6666666.148647.peg.398 CDS NC_010729.1 425888 425634 -2 - 255 SSU ribosomal protein S20p Ribosome SSU bacterial
fig|6666666.148647.peg.399 CDS NC_010729.1 428760 426565 -3 - 2196 3@1-to-5@1 exoribonuclease RNase R RNA processing and degradation, bacterial
fig|6666666.148647.peg.400 CDS NC_010729.1 430324 428813 -1 - 1512 putative auxin-regulated protein - none -
fig|6666666.148647.peg.401 CDS NC_010729.1 432208 430358 -1 - 1851 ABC transporter, ATP-binding protein, MsbA family - none -
fig|6666666.148647.peg.402 CDS NC_010729.1 432834 435614 3 + 2781 FIG00935738: hypothetical protein - none -
fig|6666666.148647.peg.403 CDS NC_010729.1 436328 436212 -2 - 117 transposase in ISPg1 - none -
fig|6666666.148647.peg.404 CDS NC_010729.1 436453 436578 1 + 126 hypothetical protein - none -
fig|6666666.148647.peg.405 CDS NC_010729.1 436686 437330 3 + 645 Pyridoxamine 5@1-phosphate oxidase (EC 1.4.3.5) Pyridoxin (Vitamin B6) Biosynthesis
fig|6666666.148647.peg.406 CDS NC_010729.1 437367 437771 3 + 405 Rhodanese-like domain protein - none -
fig|6666666.148647.peg.407 CDS NC_010729.1 437860 440205 1 + 2346 Alpha-1,2-mannosidase Mannose Metabolism
fig|6666666.148647.peg.408 CDS NC_010729.1 440230 442533 1 + 2304 Alpha-1,2-mannosidase Mannose Metabolism
fig|6666666.148647.peg.409 CDS NC_010729.1 442846 442691 -1 - 156 hypothetical protein - none -
fig|6666666.148647.peg.410 CDS NC_010729.1 443080 443433 1 + 354 Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage Bacterial Cell Division;
Bacterial Cytoskeleton;
Cell division-ribosomal stress proteins cluster;
Stationary phase repair cluster
fig|6666666.148647.peg.411 CDS NC_010729.1 443454 443816 3 + 363 FIG00936163: hypothetical protein - none -
fig|6666666.148647.peg.412 CDS NC_010729.1 443836 444810 1 + 975 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) RNA pseudouridine syntheses;
Ribosome biogenesis bacterial
fig|6666666.148647.peg.413 CDS NC_010729.1 444847 446895 1 + 2049 Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8) Biogenesis of c-type cytochromes;
Periplasmic disulfide interchange
fig|6666666.148647.peg.414 CDS NC_010729.1 446913 447698 3 + 786 Nucleoside triphosphate pyrophosphohydrolase MazG (EC 3.6.1.8) Nucleoside triphosphate pyrophosphohydrolase MazG
fig|6666666.148647.peg.415 CDS NC_010729.1 447756 449720 3 + 1965 DNA gyrase subunit B (EC 5.99.1.3) Cell Division Subsystem including YidCD;
DNA gyrase subunits;
DNA replication cluster 1;
DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.148647.peg.416 CDS NC_010729.1 449926 451521 1 + 1596 Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Folate Biosynthesis
fig|6666666.148647.peg.417 CDS NC_010729.1 456477 452503 -3 - 3975 Type II restriction endonuclease - none -
fig|6666666.148647.peg.418 CDS NC_010729.1 457500 456487 -3 - 1014 type II DNA modification methyltransferase, putative - none -
fig|6666666.148647.peg.419 CDS NC_010729.1 457961 457746 -2 - 216 hypothetical protein - none -
fig|6666666.148647.peg.420 CDS NC_010729.1 458560 459654 1 + 1095 FIG004453: protein YceG like CBSS-323097.3.peg.2594;
Cluster containing Alanyl-tRNA synthetase;
tRNA modification Bacteria
fig|6666666.148647.peg.421 CDS NC_010729.1 459678 460400 3 + 723 Molybdopterin biosynthesis protein MoeB - none -
fig|6666666.148647.peg.422 CDS NC_010729.1 460397 461056 2 + 660 Lipoprotein releasing system ATP-binding protein LolD Lipoprotein sorting system
fig|6666666.148647.peg.423 CDS NC_010729.1 461086 461790 1 + 705 Conserved domain protein - none -
fig|6666666.148647.peg.424 CDS NC_010729.1 461797 462399 1 + 603 Hypothetical YciO protein, TsaC/YrdC paralog - none -
fig|6666666.148647.peg.425 CDS NC_010729.1 462882 463352 3 + 471 Transcription elongation factor GreA Transcription factors bacterial
fig|6666666.148647.peg.426 CDS NC_010729.1 463368 463757 3 + 390 HIT family protein - none -
fig|6666666.148647.peg.427 CDS NC_010729.1 464033 463896 -2 - 138 Mobile element protein - none -
fig|6666666.148647.peg.428 CDS NC_010729.1 465144 464668 -3 - 477 hypothetical protein - none -
fig|6666666.148647.peg.429 CDS NC_010729.1 466427 465141 -2 - 1287 Alpha-amylase (EC 3.2.1.1) Maltose and Maltodextrin Utilization
fig|6666666.148647.peg.430 CDS NC_010729.1 467674 466424 -1 - 1251 Glycosyltransferase (EC 2.4.1.-) - none -
fig|6666666.148647.peg.431 CDS NC_010729.1 469659 467683 -3 - 1977 Putative glycogen debranching enzyme, archaeal type, TIGR01561 Glycogen metabolism
fig|6666666.148647.peg.432 CDS NC_010729.1 470011 470184 1 + 174 hypothetical protein - none -
fig|6666666.148647.peg.433 CDS NC_010729.1 470847 470146 -3 - 702 ATP-binding protein - none -
fig|6666666.148647.peg.434 CDS NC_010729.1 472171 470882 -1 - 1290 FIG00936249: hypothetical protein - none -
fig|6666666.148647.peg.435 CDS NC_010729.1 472166 472339 2 + 174 FIG00935774: hypothetical protein - none -
fig|6666666.148647.peg.436 CDS NC_010729.1 473730 472474 -3 - 1257 Phosphoglycerate kinase (EC 2.7.2.3) Glycolysis and Gluconeogenesis
fig|6666666.148647.peg.437 CDS NC_010729.1 474041 475633 2 + 1593 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.148647.peg.438 CDS NC_010729.1 476041 475829 -1 - 213 hemagglutinin-related protein - none -
fig|6666666.148647.peg.439 CDS NC_010729.1 476403 476041 -3 - 363 hemagglutinin-related protein - none -
fig|6666666.148647.peg.440 CDS NC_010729.1 476939 476631 -2 - 309 hypothetical protein - none -
fig|6666666.148647.peg.441 CDS NC_010729.1 477217 477104 -1 - 114 hypothetical protein - none -
fig|6666666.148647.peg.442 CDS NC_010729.1 478892 479020 2 + 129 hypothetical protein - none -
fig|6666666.148647.peg.443 CDS NC_010729.1 483871 482969 -1 - 903 Mobile element protein - none -
fig|6666666.148647.peg.444 CDS NC_010729.1 484199 484372 2 + 174 hypothetical protein - none -
fig|6666666.148647.peg.445 CDS NC_010729.1 484651 484523 -1 - 129 hypothetical protein - none -
fig|6666666.148647.peg.446 CDS NC_010729.1 486212 484845 -2 - 1368 Outer membrane efflux protein - none -
fig|6666666.148647.peg.447 CDS NC_010729.1 487315 486209 -1 - 1107 Membrane fusion efflux protein - none -
fig|6666666.148647.peg.448 CDS NC_010729.1 488647 487385 -1 - 1263 ABC transporter permease protein - none -
fig|6666666.148647.peg.449 CDS NC_010729.1 489944 488670 -2 - 1275 ABC transporter permease protein - none -
fig|6666666.148647.peg.450 CDS NC_010729.1 490628 489969 -2 - 660 ABC transporter ATP-binding protein YvcR - none -
fig|6666666.148647.peg.451 CDS NC_010729.1 491054 490647 -2 - 408 FIG00936421: hypothetical protein - none -
fig|6666666.148647.peg.452 CDS NC_010729.1 491086 491271 1 + 186 hypothetical protein - none -
fig|6666666.148647.peg.453 CDS NC_010729.1 491540 492064 2 + 525 RNA polymerase sigma-70 factor, ECF subfamily - none -
fig|6666666.148647.peg.454 CDS NC_010729.1 492061 492453 1 + 393 hypothetical protein - none -
fig|6666666.148647.peg.455 CDS NC_010729.1 492766 492650 -1 - 117 hypothetical protein - none -
fig|6666666.148647.peg.456 CDS NC_010729.1 493692 492790 -3 - 903 Mobile element protein - none -
fig|6666666.148647.peg.457 CDS NC_010729.1 496575 494428 -3 - 2148 Methylmalonyl-CoA mutase (EC 5.4.99.2) Propionyl-CoA to Succinyl-CoA Module
fig|6666666.148647.peg.458 CDS NC_010729.1 498460 496604 -1 - 1857 Methylmalonyl-CoA mutase, small subunit (EC 5.4.99.2) - none -
fig|6666666.148647.peg.459 CDS NC_010729.1 498761 500233 2 + 1473 hypothetical protein - none -
fig|6666666.148647.peg.460 CDS NC_010729.1 501114 502016 3 + 903 Mobile element protein - none -
fig|6666666.148647.peg.461 CDS NC_010729.1 502046 502513 2 + 468 DNA-binding protein, histone-like family - none -
fig|6666666.148647.peg.462 CDS NC_010729.1 502890 503021 3 + 132 hypothetical protein - none -
fig|6666666.148647.peg.463 CDS NC_010729.1 504325 503654 -1 - 672 D-alanyl-D-alanine dipeptidase (EC 3.4.13.22) - none -
fig|6666666.148647.peg.464 CDS NC_010729.1 505580 504357 -2 - 1224 FIG00935655: hypothetical protein - none -
fig|6666666.148647.peg.465 CDS NC_010729.1 507395 505605 -2 - 1791 FIG00935583: hypothetical protein - none -
fig|6666666.148647.peg.466 CDS NC_010729.1 510409 507422 -1 - 2988 FIG00935997: hypothetical protein - none -
fig|6666666.148647.peg.467 CDS NC_010729.1 512907 510667 -3 - 2241 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I Stringent Response, (p)ppGpp metabolism
fig|6666666.148647.peg.468 CDS NC_010729.1 514396 512975 -1 - 1422 Cardiolipin synthetase (EC 2.7.8.-) Cardiolipin synthesis
fig|6666666.148647.peg.469 CDS NC_010729.1 514588 514412 -1 - 177 hypothetical protein - none -
fig|6666666.148647.peg.470 CDS NC_010729.1 514794 515546 3 + 753 Biotin synthesis protein BioG Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.148647.peg.471 CDS NC_010729.1 515537 516292 2 + 756 Biotin synthesis protein BioC Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.148647.peg.472 CDS NC_010729.1 517383 516322 -3 - 1062 carboxyl-terminal protease-related protein - none -
fig|6666666.148647.peg.473 CDS NC_010729.1 518338 517391 -1 - 948 FIG00936187: hypothetical protein - none -
fig|6666666.148647.peg.474 CDS NC_010729.1 521021 518325 -2 - 2697 Topoisomerase IV subunit A (EC 5.99.1.-) DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.148647.peg.475 CDS NC_010729.1 522275 521082 -2 - 1194 membrane bound regulatory protein, putative - none -
fig|6666666.148647.peg.476 CDS NC_010729.1 522589 522897 1 + 309 FIG00935788: hypothetical protein - none -
fig|6666666.148647.peg.477 CDS NC_010729.1 523058 524257 2 + 1200 Vitellogenin II precursor - none -
fig|6666666.148647.peg.478 CDS NC_010729.1 524362 526026 1 + 1665 putative hemin receptor - none -
fig|6666666.148647.peg.479 CDS NC_010729.1 526474 526319 -1 - 156 Mobile element protein - none -
fig|6666666.148647.peg.480 CDS NC_010729.1 527390 527277 -2 - 114 hypothetical protein - none -
fig|6666666.148647.peg.481 CDS NC_010729.1 527821 527564 -1 - 258 Mobile element protein - none -
fig|6666666.148647.peg.482 CDS NC_010729.1 527808 527945 3 + 138 hypothetical protein - none -
fig|6666666.148647.peg.483 CDS NC_010729.1 528038 529306 2 + 1269 hypothetical protein - none -
fig|6666666.148647.peg.484 CDS NC_010729.1 529331 529960 2 + 630 immunoreactive 23 kDa antigen PG66 - none -
fig|6666666.148647.peg.485 CDS NC_010729.1 530166 531233 3 + 1068 Aldose 1-epimerase (EC 5.1.3.3) Lactose and Galactose Uptake and Utilization;
Maltose and Maltodextrin Utilization
fig|6666666.148647.peg.486 CDS NC_010729.1 531283 532437 1 + 1155 Galactokinase (EC 2.7.1.6) Lactose and Galactose Uptake and Utilization
fig|6666666.148647.peg.487 CDS NC_010729.1 532537 532409 -1 - 129 hypothetical protein - none -
fig|6666666.148647.peg.488 CDS NC_010729.1 532821 532570 -3 - 252 FIG00935531: hypothetical protein - none -
fig|6666666.148647.peg.489 CDS NC_010729.1 533708 533061 -2 - 648 FIG00936164: hypothetical protein - none -
fig|6666666.148647.peg.490 CDS NC_010729.1 536202 533722 -3 - 2481 Cell division protein FtsK Bacterial Cell Division;
Bacterial Cytoskeleton;
Bacterial RNA-metabolizing Zn-dependent hydrolases
fig|6666666.148647.peg.491 CDS NC_010729.1 537626 536511 -2 - 1116 Thiol:disulfide interchange protein - none -
fig|6666666.148647.peg.492 CDS NC_010729.1 537766 537623 -1 - 144 hypothetical protein - none -
fig|6666666.148647.peg.493 CDS NC_010729.1 539092 537782 -1 - 1311 DNA-damage-inducible protein F - none -
fig|6666666.148647.peg.494 CDS NC_010729.1 539610 539107 -3 - 504 Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48) LMPTP YfkJ cluster
fig|6666666.148647.peg.495 CDS NC_010729.1 541825 539618 -1 - 2208 Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4) Copper Transport System;
Copper homeostasis
fig|6666666.148647.peg.496 CDS NC_010729.1 542124 541861 -3 - 264 FIG00936285: hypothetical protein - none -
fig|6666666.148647.peg.497 CDS NC_010729.1 542379 542233 -3 - 147 hypothetical protein - none -
fig|6666666.148647.peg.498 CDS NC_010729.1 542890 543543 1 + 654 Succinate dehydrogenase cytochrome b subunit Succinate dehydrogenase
fig|6666666.148647.peg.499 CDS NC_010729.1 543574 545517 1 + 1944 Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) Succinate dehydrogenase;
TCA Cycle
fig|6666666.148647.peg.500 CDS NC_010729.1 545546 546301 2 + 756 Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) 5-FCL-like protein;
Succinate dehydrogenase;
TCA Cycle
fig|6666666.148647.peg.501 CDS NC_010729.1 546534 546938 3 + 405 Methylmalonyl-CoA epimerase (EC 5.1.99.1) Propionyl-CoA to Succinyl-CoA Module
fig|6666666.148647.peg.502 CDS NC_010729.1 547202 548590 2 + 1389 Methylmalonyl-CoA decarboxylase, alpha chain (EC 4.1.1.41) Na+ translocating decarboxylases and related biotin-dependent enzymes;
Propionyl-CoA to Succinyl-CoA Module
fig|6666666.148647.peg.503 CDS NC_010729.1 548615 549556 2 + 942 Membrane protein associated with methylmalonyl-CoA decarboxylase Na+ translocating decarboxylases and related biotin-dependent enzymes
fig|6666666.148647.peg.504 CDS NC_010729.1 549553 549789 1 + 237 hypothetical protein - none -
fig|6666666.148647.peg.505 CDS NC_010729.1 549828 550274 3 + 447 Biotin carboxyl carrier protein of methylmalonyl-CoA decarboxylase Na+ translocating decarboxylases and related biotin-dependent enzymes
fig|6666666.148647.peg.506 CDS NC_010729.1 550279 551430 1 + 1152 Methylmalonyl-CoA decarboxylase, beta chain (EC 4.1.1.41); Oxaloacetate decarboxylase beta chain (EC 4.1.1.3) Na+ translocating decarboxylases and related biotin-dependent enzymes;
Na+ translocating decarboxylases and related biotin-dependent enzymes;
Propionyl-CoA to Succinyl-CoA Module;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.148647.peg.507 CDS NC_010729.1 551462 551632 2 + 171 hypothetical protein - none -
fig|6666666.148647.peg.508 CDS NC_010729.1 552508 553230 1 + 723 cAMP-dependent Kef-type K+ transport system Potassium homeostasis
fig|6666666.148647.peg.509 CDS NC_010729.1 554960 553557 -2 - 1404 Aminopeptidase C (EC 3.4.22.40) Protein degradation
fig|6666666.148647.peg.510 CDS NC_010729.1 557342 555012 -2 - 2331 FIG00935792: hypothetical protein - none -
fig|6666666.148647.peg.511 CDS NC_010729.1 557914 557330 -1 - 585 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) Heat shock dnaK gene cluster extended;
Housecleaning nucleoside triphosphate pyrophosphatases
fig|6666666.148647.peg.512 CDS NC_010729.1 557985 558365 3 + 381 FIG00936585: hypothetical protein - none -
fig|6666666.148647.peg.513 CDS NC_010729.1 558337 559110 1 + 774 Biotin-protein ligase (EC 6.3.4.15) Biotin biosynthesis;
Biotin synthesis cluster
fig|6666666.148647.peg.514 CDS NC_010729.1 559145 560170 2 + 1026 FIG00936504: hypothetical protein - none -
fig|6666666.148647.peg.515 CDS NC_010729.1 560992 560204 -1 - 789 FIG00935612: hypothetical protein - none -
fig|6666666.148647.peg.516 CDS NC_010729.1 561669 560989 -3 - 681 Lipoprotein signal peptidase (EC 3.4.23.36) Lipoprotein Biosynthesis;
Signal peptidase
fig|6666666.148647.peg.517 CDS NC_010729.1 562053 561673 -3 - 381 DnaK suppressor protein, putative - none -
fig|6666666.148647.peg.518 CDS NC_010729.1 565536 562123 -3 - 3414 Isoleucyl-tRNA synthetase (EC 6.1.1.5) tRNA aminoacylation, Ile
fig|6666666.148647.peg.519 CDS NC_010729.1 565878 566534 3 + 657 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) Conserved gene cluster associated with Met-tRNA formyltransferase;
Pentose phosphate pathway;
Riboflavin synthesis cluster
fig|6666666.148647.peg.520 CDS NC_010729.1 566541 568076 3 + 1536 FIG00936522: hypothetical protein - none -
fig|6666666.148647.peg.521 CDS NC_010729.1 570707 568623 -2 - 2085 Membrane protein containing HD superfamily hydrolase domain, YQFF ortholog CBSS-56780.10.peg.1536
fig|6666666.148647.peg.522 CDS NC_010729.1 570994 571149 1 + 156 hypothetical protein - none -
fig|6666666.148647.peg.523 CDS NC_010729.1 571474 572349 1 + 876 Dihydropteroate synthase (EC 2.5.1.15) Folate Biosynthesis;
Folate biosynthesis cluster
fig|6666666.148647.peg.524 CDS NC_010729.1 572409 573176 3 + 768 Diadenylate cyclase spyDAC; Bacterial checkpoint controller DisA with nucleotide-binding domain Bacterial checkpoint-control-related cluster;
Bacterial checkpoint-control-related cluster
fig|6666666.148647.peg.525 CDS NC_010729.1 573866 573192 -2 - 675 putative membrane-associated phospholipid phosphatase - none -
fig|6666666.148647.peg.526 CDS NC_010729.1 574762 573929 -1 - 834 BatE Aerotolerance operon in Bacteroides and potentially orthologous operons in other organisms
fig|6666666.148647.peg.527 CDS NC_010729.1 576516 574834 -3 - 1683 BatD Aerotolerance operon in Bacteroides and potentially orthologous operons in other organisms
fig|6666666.148647.peg.528 CDS NC_010729.1 577521 576817 -3 - 705 BatC Aerotolerance operon in Bacteroides and potentially orthologous operons in other organisms
fig|6666666.148647.peg.529 CDS NC_010729.1 578579 577560 -2 - 1020 BatB Aerotolerance operon in Bacteroides and potentially orthologous operons in other organisms
fig|6666666.148647.peg.530 CDS NC_010729.1 579573 578590 -3 - 984 BatA (Bacteroides aerotolerance operon) Aerotolerance operon in Bacteroides and potentially orthologous operons in other organisms
fig|6666666.148647.peg.531 CDS NC_010729.1 580526 579570 -2 - 957 FIG00936810: hypothetical protein - none -
fig|6666666.148647.peg.532 CDS NC_010729.1 581395 580523 -1 - 873 hypothetical protein PA3071 Aerotolerance operon in Bacteroides and potentially orthologous operons in other organisms
fig|6666666.148647.peg.533 CDS NC_010729.1 582401 581406 -2 - 996 MoxR-like ATPase in aerotolerance operon Aerotolerance operon in Bacteroides and potentially orthologous operons in other organisms
fig|6666666.148647.peg.534 CDS NC_010729.1 583429 582503 -1 - 927 Quinolinate synthetase (EC 2.5.1.72) Mycobacterium virulence operon possibly involved in quinolinate biosynthesis;
NAD and NADP cofactor biosynthesis global
fig|6666666.148647.peg.535 CDS NC_010729.1 584291 583449 -2 - 843 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) Mycobacterium virulence operon possibly involved in quinolinate biosynthesis;
NAD and NADP cofactor biosynthesis global
fig|6666666.148647.peg.536 CDS NC_010729.1 585915 584323 -3 - 1593 L-aspartate oxidase (EC 1.4.3.16) Mycobacterium virulence operon possibly involved in quinolinate biosynthesis;
NAD and NADP cofactor biosynthesis global
fig|6666666.148647.peg.537 CDS NC_010729.1 586221 586096 -3 - 126 hypothetical protein - none -
fig|6666666.148647.peg.538 CDS NC_010729.1 586849 587622 1 + 774 transcriptional regulator, Crp/Fnr family Oxidative stress
fig|6666666.148647.peg.539 CDS NC_010729.1 587687 588493 2 + 807 FIG00936034: hypothetical protein - none -
fig|6666666.148647.peg.540 CDS NC_010729.1 588586 590001 1 + 1416 Metallo-beta-lactamase family protein - none -
fig|6666666.148647.peg.541 CDS NC_010729.1 590037 590357 3 + 321 rhodanese-like domain protein - none -
fig|6666666.148647.peg.542 CDS NC_010729.1 590354 590485 2 + 132 hypothetical protein - none -
fig|6666666.148647.peg.543 CDS NC_010729.1 591200 590955 -2 - 246 Mobile element protein - none -
fig|6666666.148647.peg.544 CDS NC_010729.1 591535 593058 1 + 1524 Glutamyl-tRNA synthetase (EC 6.1.1.17) Heme and Siroheme Biosynthesis;
tRNA aminoacylation, Glu and Gln
fig|6666666.148647.peg.545 CDS NC_010729.1 593083 594321 1 + 1239 3-deoxy-D-manno-octulosonic-acid transferase (EC 2.-.-.-) KDO2-Lipid A biosynthesis
fig|6666666.148647.peg.546 CDS NC_010729.1 594406 596361 1 + 1956 FIG00935687: hypothetical protein - none -
fig|6666666.148647.peg.547 CDS NC_010729.1 596476 597345 1 + 870 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.148647.peg.548 CDS NC_010729.1 597360 597950 3 + 591 dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.148647.peg.549 CDS NC_010729.1 597947 598804 2 + 858 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.148647.peg.550 CDS NC_010729.1 598811 599875 2 + 1065 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.148647.peg.551 CDS NC_010729.1 599950 601038 1 + 1089 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) Glycine and Serine Utilization;
Glycine cleavage system
fig|6666666.148647.peg.552 CDS NC_010729.1 601261 601395 1 + 135 hypothetical protein - none -
fig|6666666.148647.peg.553 CDS NC_010729.1 602328 602002 -3 - 327 FIG00935708: hypothetical protein - none -
fig|6666666.148647.peg.554 CDS NC_010729.1 602912 602334 -2 - 579 hypothetical transporter PduT for various metalloporphyrins - none -
fig|6666666.148647.peg.555 CDS NC_010729.1 603659 602982 -2 - 678 FIG00935937: hypothetical protein - none -
fig|6666666.148647.peg.556 CDS NC_010729.1 608065 603656 -1 - 4410 CobN/magnesium chelatase family protein - none -
fig|6666666.148647.peg.557 CDS NC_010729.1 610042 608102 -1 - 1941 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins Ton and Tol transport systems
fig|6666666.148647.peg.558 CDS NC_010729.1 610707 610057 -3 - 651 hmuY protein - none -
fig|6666666.148647.peg.559 CDS NC_010729.1 611026 611166 1 + 141 hypothetical protein - none -
fig|6666666.148647.peg.560 CDS NC_010729.1 613929 611560 -3 - 2370 FIG00935712: hypothetical protein - none -
fig|6666666.148647.peg.561 CDS NC_010729.1 614473 614309 -1 - 165 hypothetical protein - none -
fig|6666666.148647.peg.562 CDS NC_010729.1 615423 614848 -3 - 576 Manganese superoxide dismutase (EC 1.15.1.1) Oxidative stress;
Protection from Reactive Oxygen Species
fig|6666666.148647.peg.563 CDS NC_010729.1 616331 615561 -2 - 771 UPF0246 protein YaaA - none -
fig|6666666.148647.peg.564 CDS NC_010729.1 616835 616416 -2 - 420 4-hydroxybenzoyl-CoA thioesterase family active site Ton and Tol transport systems
fig|6666666.148647.peg.565 CDS NC_010729.1 618144 616891 -3 - 1254 Collagenase precursor (EC 3.4.-.-) - none -
fig|6666666.148647.peg.566 CDS NC_010729.1 618591 618148 -3 - 444 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) Folate Biosynthesis;
Folate biosynthesis cluster
fig|6666666.148647.peg.567 CDS NC_010729.1 619646 618594 -2 - 1053 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) CBSS-211586.1.peg.2832;
Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.148647.peg.568 CDS NC_010729.1 620440 619664 -1 - 777 tRNA pseudouridine synthase B (EC 4.2.1.70) CBSS-138119.3.peg.2719;
RNA pseudouridine syntheses;
Riboflavin, FMN and FAD metabolism in plants;
tRNA modification Bacteria;
tRNA processing
fig|6666666.148647.peg.569 CDS NC_010729.1 621292 620450 -1 - 843 Undecaprenyl-diphosphatase (EC 3.6.1.27) - none -
fig|6666666.148647.peg.570 CDS NC_010729.1 621627 621400 -3 - 228 FIG00935882: hypothetical protein - none -
fig|6666666.148647.peg.571 CDS NC_010729.1 622501 621674 -1 - 828 Cell division protein FtsX Bacterial Cell Division
fig|6666666.148647.peg.572 CDS NC_010729.1 622503 622628 3 + 126 hypothetical protein - none -
fig|6666666.148647.peg.573 CDS NC_010729.1 624307 624516 1 + 210 transcriptional regulator, putative - none -
fig|6666666.148647.peg.574 CDS NC_010729.1 625749 624688 -3 - 1062 Mobile element protein - none -
fig|6666666.148647.peg.575 CDS NC_010729.1 626404 626628 1 + 225 Transposase - none -
fig|6666666.148647.peg.576 CDS NC_010729.1 626732 627817 2 + 1086 Mobile element protein - none -
fig|6666666.148647.peg.577 CDS NC_010729.1 628125 627916 -3 - 210 Conjugative transposon protein TraN Conjugative transposon, Bacteroidales
fig|6666666.148647.peg.578 CDS NC_010729.1 628159 629265 1 + 1107 Putative mobilization protein BF0133 Conjugative transposon, Bacteroidales
fig|6666666.148647.peg.579 CDS NC_010729.1 629353 634965 1 + 5613 reticulocyte binding protein 2 homolog a - none -
fig|6666666.148647.peg.580 CDS NC_010729.1 635151 636635 3 + 1485 FIG00936597: hypothetical protein - none -
fig|6666666.148647.peg.581 CDS NC_010729.1 636731 638812 2 + 2082 DNA topoisomerase III, Bacteroidales-type (EC 5.99.1.2) DNA topoisomerases, Type I, ATP-independent
fig|6666666.148647.peg.582 CDS NC_010729.1 638954 640594 2 + 1641 hypothetical protein - none -
fig|6666666.148647.peg.583 CDS NC_010729.1 642104 640869 -2 - 1236 Toprim domain protein CBSS-315749.4.peg.3658
fig|6666666.148647.peg.584 CDS NC_010729.1 642231 643133 3 + 903 Mobile element protein - none -
fig|6666666.148647.peg.585 CDS NC_010729.1 643172 643486 2 + 315 conserved hypothetical fusion protein - none -
fig|6666666.148647.peg.586 CDS NC_010729.1 643570 644655 1 + 1086 Mobile element protein - none -
fig|6666666.148647.peg.587 CDS NC_010729.1 644669 645304 2 + 636 Calcium-transporting ATPase - none -
fig|6666666.148647.peg.588 CDS NC_010729.1 645350 645604 2 + 255 FIG00935801: hypothetical protein - none -
fig|6666666.148647.peg.589 CDS NC_010729.1 645594 645830 3 + 237 FIG00937640: hypothetical protein - none -
fig|6666666.148647.peg.590 CDS NC_010729.1 646047 647105 3 + 1059 Huntington interacting protein HYPE - none -
fig|6666666.148647.peg.591 CDS NC_010729.1 648518 647136 -2 - 1383 Glycosaminoglycan attachment site - none -
fig|6666666.148647.peg.592 CDS NC_010729.1 649075 648638 -1 - 438 Conjugative transposon protein TraQ Conjugative transposon, Bacteroidales
fig|6666666.148647.peg.593 CDS NC_010729.1 649661 649095 -2 - 567 Conjugative transposon protein TraO Conjugative transposon, Bacteroidales
fig|6666666.148647.peg.594 CDS NC_010729.1 650619 649684 -3 - 936 Conjugative transposon protein TraN Conjugative transposon, Bacteroidales
fig|6666666.148647.peg.595 CDS NC_010729.1 652054 650693 -1 - 1362 Conjugative transposon protein TraM Conjugative transposon, Bacteroidales
fig|6666666.148647.peg.596 CDS NC_010729.1 652254 652051 -3 - 204 hypothetical protein - none -
fig|6666666.148647.peg.597 CDS NC_010729.1 652941 652318 -3 - 624 Conjugative transposon protein TraK Conjugative transposon, Bacteroidales
fig|6666666.148647.peg.598 CDS NC_010729.1 653945 652959 -2 - 987 Conjugative transposon protein TraJ Conjugative transposon, Bacteroidales
fig|6666666.148647.peg.599 CDS NC_010729.1 654547 653966 -1 - 582 Conjugative transposon protein TraI Conjugative transposon, Bacteroidales
fig|6666666.148647.peg.600 CDS NC_010729.1 655093 654641 -1 - 453 Conjugative transposon protein TraG Conjugative transposon, Bacteroidales
fig|6666666.148647.peg.601 CDS NC_010729.1 655320 655186 -3 - 135 Retron-type RNA-directed DNA polymerase (EC 2.7.7.49) Group II intron-associated genes
fig|6666666.148647.peg.602 CDS NC_010729.1 655769 656854 2 + 1086 Mobile element protein - none -
fig|6666666.148647.peg.603 CDS NC_010729.1 656879 657052 2 + 174 Calcium-transporting ATPase - none -
fig|6666666.148647.peg.604 CDS NC_010729.1 657483 657638 3 + 156 hypothetical protein - none -
fig|6666666.148647.peg.605 CDS NC_010729.1 657990 658472 3 + 483 Ferritin-like protein 2 Iron-sulfur cluster assembly
fig|6666666.148647.peg.606 CDS NC_010729.1 659805 658720 -3 - 1086 Mobile element protein - none -
fig|6666666.148647.peg.607 CDS NC_010729.1 661892 659925 -2 - 1968 Glucosamine-6-phosphate deaminase (EC 3.5.99.6) - none -
fig|6666666.148647.peg.608 CDS NC_010729.1 664232 662070 -2 - 2163 FIG00936660: hypothetical protein - none -
fig|6666666.148647.peg.609 CDS NC_010729.1 664750 664295 -1 - 456 FIG00936338: hypothetical protein - none -
fig|6666666.148647.peg.610 CDS NC_010729.1 665898 664774 -3 - 1125 FIG00936554: hypothetical protein - none -
fig|6666666.148647.peg.611 CDS NC_010729.1 667311 666064 -3 - 1248 FIG008208: hypothetical protein - none -
fig|6666666.148647.peg.612 CDS NC_010729.1 668250 667330 -3 - 921 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) Glycine and Serine Utilization;
Pyridoxin (Vitamin B6) Biosynthesis;
Serine Biosynthesis
fig|6666666.148647.peg.613 CDS NC_010729.1 669433 668351 -1 - 1083 Phosphoserine aminotransferase (EC 2.6.1.52) Glycine and Serine Utilization;
Pyridoxin (Vitamin B6) Biosynthesis;
Serine Biosynthesis
fig|6666666.148647.peg.614 CDS NC_010729.1 671074 669767 -1 - 1308 UDP-glucose dehydrogenase (EC 1.1.1.22) - none -
fig|6666666.148647.peg.615 CDS NC_010729.1 671843 671337 -2 - 507 DNA-binding protein, histone-like family - none -
fig|6666666.148647.peg.616 CDS NC_010729.1 672081 671866 -3 - 216 hypothetical protein - none -
fig|6666666.148647.peg.617 CDS NC_010729.1 672945 672379 -3 - 567 Translation elongation factor P Translation elongation factors bacterial
fig|6666666.148647.peg.618 CDS NC_010729.1 674633 673077 -2 - 1557 FIG00935524: hypothetical protein - none -
fig|6666666.148647.peg.619 CDS NC_010729.1 674829 675842 3 + 1014 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch;
Threonine and Homoserine Biosynthesis
fig|6666666.148647.peg.620 CDS NC_010729.1 676513 677448 1 + 936 rRNA small subunit methyltransferase H 16S rRNA modification within P site of ribosome;
Bacterial Cell Division
fig|6666666.148647.peg.621 CDS NC_010729.1 677448 677921 3 + 474 Cell division protein FtsL 16S rRNA modification within P site of ribosome;
Bacterial Cell Division;
Bacterial Cytoskeleton;
Stationary phase repair cluster
fig|6666666.148647.peg.622 CDS NC_010729.1 677931 680132 3 + 2202 Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129) 16S rRNA modification within P site of ribosome;
Bacterial Cell Division;
Bacterial Cytoskeleton;
CBSS-83331.1.peg.3039;
Peptidoglycan Biosynthesis
fig|6666666.148647.peg.623 CDS NC_010729.1 680143 681606 1 + 1464 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo
fig|6666666.148647.peg.624 CDS NC_010729.1 681621 682880 3 + 1260 Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC 2.7.8.13) Peptidoglycan Biosynthesis
fig|6666666.148647.peg.625 CDS NC_010729.1 682904 684256 2 + 1353 UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC 6.3.2.9) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo
fig|6666666.148647.peg.626 CDS NC_010729.1 684268 685524 1 + 1257 Cell division protein FtsW Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ
fig|6666666.148647.peg.627 CDS NC_010729.1 685521 686660 3 + 1140 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) Peptidoglycan Biosynthesis;
cell division core of larger cluster
fig|6666666.148647.peg.628 CDS NC_010729.1 686660 688030 2 + 1371 UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo;
cell division cluster containing FtsQ
fig|6666666.148647.peg.629 CDS NC_010729.1 688171 688800 1 + 630 Cell division protein FtsQ Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ;
cell division core of larger cluster
fig|6666666.148647.peg.630 CDS NC_010729.1 688849 690288 1 + 1440 Cell division protein FtsA Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ;
cell division core of larger cluster
fig|6666666.148647.peg.631 CDS NC_010729.1 690291 691664 3 + 1374 Cell division protein FtsZ (EC 3.4.24.-) Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ;
cell division core of larger cluster
fig|6666666.148647.peg.632 CDS NC_010729.1 691696 692145 1 + 450 Transamidase GatB domain protein Macromolecular synthesis operon
fig|6666666.148647.peg.633 CDS NC_010729.1 693714 693082 -3 - 633 FIG00896360: hypothetical protein - none -
fig|6666666.148647.peg.634 CDS NC_010729.1 694587 693766 -3 - 822 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) Coenzyme A Biosynthesis;
Coenzyme A Biosynthesis cluster
fig|6666666.148647.peg.635 CDS NC_010729.1 696178 694658 -1 - 1521 GMP synthase [glutamine-hydrolyzing], amidotransferase subunit (EC 6.3.5.2) / GMP synthase [glutamine-hydrolyzing], ATP pyrophosphatase subunit (EC 6.3.5.2) GMP synthase;
GMP synthase;
Purine conversions;
Purine conversions;
Purine salvage cluster;
Purine salvage cluster
fig|6666666.148647.peg.636 CDS NC_010729.1 696895 697152 1 + 258 LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-independent Ribosome LSU bacterial;
Ribosome LSU bacterial
fig|6666666.148647.peg.637 CDS NC_010729.1 697369 698865 1 + 1497 HtrA protease/chaperone protein Periplasmic Stress Response
fig|6666666.148647.peg.638 CDS NC_010729.1 699055 699918 1 + 864 RNA polymerase sigma factor RpoD CBSS-349161.4.peg.2417;
Macromolecular synthesis operon;
Transcription initiation, bacterial sigma factors
fig|6666666.148647.peg.639 CDS NC_010729.1 700015 700368 1 + 354 SSU ribosomal protein S6p Ribosome SSU bacterial
fig|6666666.148647.peg.640 CDS NC_010729.1 700372 700644 1 + 273 SSU ribosomal protein S18p @ SSU ribosomal protein S18p, zinc-independent Ribosome SSU bacterial;
Ribosome SSU bacterial
fig|6666666.148647.peg.641 CDS NC_010729.1 700669 701208 1 + 540 LSU ribosomal protein L9p Ribosome LSU bacterial
fig|6666666.148647.peg.642 CDS NC_010729.1 701484 703439 3 + 1956 membrane protein, putative - none -
fig|6666666.148647.peg.643 CDS NC_010729.1 703439 704659 2 + 1221 3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) / GTP cyclohydrolase II (EC 3.5.4.25) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster;
Riboflavin synthesis cluster;
riboflavin to FAD
fig|6666666.148647.peg.644 CDS NC_010729.1 705140 706225 2 + 1086 Mobile element protein - none -
fig|6666666.148647.peg.645 CDS NC_010729.1 706432 707424 1 + 993 low affinity penicillin binding protein - none -
fig|6666666.148647.peg.646 CDS NC_010729.1 707454 708149 3 + 696 Cytidylate kinase (EC 2.7.4.25) pyrimidine conversions
fig|6666666.148647.peg.647 CDS NC_010729.1 708146 709015 2 + 870 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.148647.peg.648 CDS NC_010729.1 710240 708999 -2 - 1242 FIG00935961: hypothetical protein - none -
fig|6666666.148647.peg.649 CDS NC_010729.1 710304 710798 3 + 495 FIG00935532: hypothetical protein - none -
fig|6666666.148647.peg.650 CDS NC_010729.1 710936 710805 -2 - 132 hypothetical protein - none -
fig|6666666.148647.peg.651 CDS NC_010729.1 711712 711578 -1 - 135 hypothetical protein - none -
fig|6666666.148647.peg.652 CDS NC_010729.1 711889 712842 1 + 954 FIG00936069: hypothetical protein - none -
fig|6666666.148647.peg.653 CDS NC_010729.1 713231 713761 2 + 531 FIG00935784: hypothetical protein - none -
fig|6666666.148647.peg.654 CDS NC_010729.1 713958 714695 3 + 738 FIG00936619: hypothetical protein - none -
fig|6666666.148647.peg.655 CDS NC_010729.1 714812 716701 2 + 1890 GTP-binding protein TypA/BipA Universal GTPases
fig|6666666.148647.peg.656 CDS NC_010729.1 716716 716841 1 + 126 hypothetical protein - none -
fig|6666666.148647.peg.657 CDS NC_010729.1 716843 717838 2 + 996 FIG00936297: hypothetical protein - none -
fig|6666666.148647.peg.658 CDS NC_010729.1 718242 718808 3 + 567 Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) Thioredoxin-disulfide reductase
fig|6666666.148647.peg.659 CDS NC_010729.1 718974 720521 3 + 1548 Alkyl hydroperoxide reductase protein F (EC 1.6.4.-) Thioredoxin-disulfide reductase
fig|6666666.148647.peg.660 CDS NC_010729.1 720727 723264 1 + 2538 ATP-dependent protease La (EC 3.4.21.53) Type I Proteolysis in bacteria, ATP-dependent
fig|6666666.148647.peg.661 CDS NC_010729.1 723261 723809 3 + 549 FIG00935813: hypothetical protein - none -
fig|6666666.148647.peg.662 CDS NC_010729.1 723806 725098 2 + 1293 FIG00694335: hypothetical protein - none -
fig|6666666.148647.peg.663 CDS NC_010729.1 725130 725885 3 + 756 Triosephosphate isomerase (EC 5.3.1.1) Glycolysis and Gluconeogenesis
fig|6666666.148647.peg.664 CDS NC_010729.1 725947 726453 1 + 507 FIG00935559: hypothetical protein - none -
fig|6666666.148647.peg.665 CDS NC_010729.1 726457 727038 1 + 582 GTP cyclohydrolase I (EC 3.5.4.16) type 1 Folate Biosynthesis;
Folate biosynthesis cluster;
Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.148647.peg.666 CDS NC_010729.1 728540 728247 -2 - 294 RNA-binding protein - none -
fig|6666666.148647.peg.667 CDS NC_010729.1 729545 728790 -2 - 756 Lipopolysaccharide ABC transporter, ATP-binding protein LptB KDO2-Lipid A biosynthesis
fig|6666666.148647.peg.668 CDS NC_010729.1 730470 729604 -3 - 867 NAD kinase (EC 2.7.1.23) NAD and NADP cofactor biosynthesis global
fig|6666666.148647.peg.669 CDS NC_010729.1 730548 731264 3 + 717 Pyridoxine 5@1-phosphate synthase (EC 2.6.99.2) Pyridoxin (Vitamin B6) Biosynthesis
fig|6666666.148647.peg.670 CDS NC_010729.1 731302 732036 1 + 735 MotA/TolQ/ExbB proton channel family protein Ton and Tol transport systems
fig|6666666.148647.peg.671 CDS NC_010729.1 732033 732452 3 + 420 Biopolymer transport protein ExbD/TolR Ton and Tol transport systems
fig|6666666.148647.peg.672 CDS NC_010729.1 732457 733284 1 + 828 Ferric siderophore transport system, periplasmic binding protein TonB Hemin transport system;
Ton and Tol transport systems
fig|6666666.148647.peg.673 CDS NC_010729.1 733299 733844 3 + 546 DJ-1/YajL/PfpI superfamily, includes chaperone protein YajL (former ThiJ), parkinsonism-associated protein DJ-1, peptidases PfpI, Hsp31 - none -
fig|6666666.148647.peg.674 CDS NC_010729.1 734816 733944 -2 - 873 Ribosomal protein L11 methyltransferase (EC 2.1.1.-) Heat shock dnaK gene cluster extended;
Ribosome biogenesis bacterial
fig|6666666.148647.peg.675 CDS NC_010729.1 736177 734813 -1 - 1365 FIG00936724: hypothetical protein - none -
fig|6666666.148647.peg.676 CDS NC_010729.1 737210 736170 -2 - 1041 Thiamine-monophosphate kinase (EC 2.7.4.16) 5-FCL-like protein;
Riboflavin synthesis cluster;
Thiamin biosynthesis
fig|6666666.148647.peg.677 CDS NC_010729.1 738289 737216 -1 - 1074 Tetraacyldisaccharide 4@1-kinase (EC 2.7.1.130) KDO2-Lipid A biosynthesis
fig|6666666.148647.peg.678 CDS NC_010729.1 740088 738319 -3 - 1770 signal peptide peptidase SppA, 67K type - none -
fig|6666666.148647.peg.679 CDS NC_010729.1 741622 741762 1 + 141 hypothetical protein - none -
fig|6666666.148647.peg.680 CDS NC_010729.1 743879 741759 -2 - 2121 Colicin I receptor precursor Ton and Tol transport systems
fig|6666666.148647.peg.681 CDS NC_010729.1 745056 743893 -3 - 1164 Adenosylcobinamide amidohydrolase (EC 3.5.1.90) Coenzyme B12 biosynthesis
fig|6666666.148647.peg.682 CDS NC_010729.1 746081 745080 -2 - 1002 iron compound ABC transporter, ATP-binding protein - none -
fig|6666666.148647.peg.683 CDS NC_010729.1 747123 746089 -3 - 1035 Vitamin B12 ABC transporter, permease component BtuC Coenzyme B12 biosynthesis
fig|6666666.148647.peg.684 CDS NC_010729.1 748295 747120 -2 - 1176 iron compound ABC transporter, periplasmic iron compound-binding protein, putative - none -
fig|6666666.148647.peg.685 CDS NC_010729.1 748632 748793 3 + 162 hypothetical protein - none -
fig|6666666.148647.peg.686 CDS NC_010729.1 748877 749461 2 + 585 FIG00936574: hypothetical protein - none -
fig|6666666.148647.peg.687 CDS NC_010729.1 749969 749586 -2 - 384 FIG00936509: hypothetical protein - none -
fig|6666666.148647.peg.688 CDS NC_010729.1 750627 750076 -3 - 552 HDIG domain protein - none -
fig|6666666.148647.peg.689 CDS NC_010729.1 751188 750904 -3 - 285 Stress responsive alpha-beta barrel domain protein Dabb - none -
fig|6666666.148647.peg.690 CDS NC_010729.1 752459 751218 -2 - 1242 Phosphoserine phosphatase (EC 3.1.3.3) Glycine and Serine Utilization;
Serine Biosynthesis;
Serine Biosynthesis
fig|6666666.148647.peg.691 CDS NC_010729.1 753690 752518 -3 - 1173 immunoreactive 46 kDa antigen PG99 - none -
fig|6666666.148647.peg.692 CDS NC_010729.1 754095 753943 -3 - 153 LSU ribosomal protein L34p Cell Division Subsystem including YidCD;
RNA modification cluster;
Ribosome LSU bacterial
fig|6666666.148647.peg.693 CDS NC_010729.1 754756 754157 -1 - 600 Septum formation protein Maf Bacterial Cell Division;
Bacterial Cytoskeleton;
Bacterial cell division cluster;
CBSS-354.1.peg.2917
fig|6666666.148647.peg.694 CDS NC_010729.1 755317 754796 -1 - 522 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC 3.1.3.45) KDO2-Lipid A biosynthesis
fig|6666666.148647.peg.695 CDS NC_010729.1 756146 755334 -2 - 813 FIG137884: hypothetical protein Coenzyme A Biosynthesis cluster
fig|6666666.148647.peg.696 CDS NC_010729.1 756693 756139 -3 - 555 Nitroreductase family protein - none -
fig|6666666.148647.peg.697 CDS NC_010729.1 757084 756953 -1 - 132 hypothetical protein - none -
fig|6666666.148647.peg.698 CDS NC_010729.1 757343 758830 2 + 1488 Oxidoreductase, Gfo/Idh/MocA family - none -
fig|6666666.148647.peg.699 CDS NC_010729.1 758994 762215 3 + 3222 Beta-galactosidase (EC 3.2.1.23) Galactosylceramide and Sulfatide metabolism;
Lactose and Galactose Uptake and Utilization;
Lactose utilization
fig|6666666.148647.peg.700 CDS NC_010729.1 762298 763386 1 + 1089 MdsC protein - none -
fig|6666666.148647.peg.701 CDS NC_010729.1 763542 764468 3 + 927 hypothetical protein - none -
fig|6666666.148647.peg.702 CDS NC_010729.1 764877 765077 3 + 201 hypothetical protein - none -
fig|6666666.148647.peg.703 CDS NC_010729.1 765079 767256 1 + 2178 TonB-dependent receptor Ton and Tol transport systems
fig|6666666.148647.peg.704 CDS NC_010729.1 767318 768166 2 + 849 Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3) Cobalamin synthesis;
Coenzyme B12 biosynthesis
fig|6666666.148647.peg.705 CDS NC_010729.1 768490 768218 -1 - 273 hypothetical protein - none -
fig|6666666.148647.peg.706 CDS NC_010729.1 768509 769423 2 + 915 Vitamin B12 ABC transporter, B12-binding component BtuF Coenzyme B12 biosynthesis
fig|6666666.148647.peg.707 CDS NC_010729.1 769420 770490 1 + 1071 Vitamin B12 ABC transporter, permease component BtuC Coenzyme B12 biosynthesis
fig|6666666.148647.peg.708 CDS NC_010729.1 770534 771292 2 + 759 FIG00936204: hypothetical protein - none -
fig|6666666.148647.peg.709 CDS NC_010729.1 772277 771684 -2 - 594 Indolepyruvate oxidoreductase subunit IorB (EC 1.2.7.8) Aromatic amino acid interconversions with aryl acids;
Indole-pyruvate oxidoreductase complex
fig|6666666.148647.peg.710 CDS NC_010729.1 773911 772304 -1 - 1608 Indolepyruvate oxidoreductase subunit IorA (EC 1.2.7.8) Aromatic amino acid interconversions with aryl acids;
Indole-pyruvate oxidoreductase complex
fig|6666666.148647.peg.711 CDS NC_010729.1 774750 773989 -3 - 762 FIG00935512: hypothetical protein - none -
fig|6666666.148647.peg.712 CDS NC_010729.1 775178 776371 2 + 1194 Carboxynorspermidine dehydrogenase - none -
fig|6666666.148647.peg.713 CDS NC_010729.1 776408 776920 2 + 513 Nicotinamidase (EC 3.5.1.19) NAD and NADP cofactor biosynthesis global;
Redox-dependent regulation of nucleus processes
fig|6666666.148647.peg.714 CDS NC_010729.1 777123 778457 3 + 1335 Type I secretion system, outer membrane component LapE - none -
fig|6666666.148647.peg.715 CDS NC_010729.1 778497 779750 3 + 1254 ABC transporter permease - none -
fig|6666666.148647.peg.716 CDS NC_010729.1 780400 782751 1 + 2352 ABC transporter, permease protein, putative - none -
fig|6666666.148647.peg.717 CDS NC_010729.1 782790 785159 3 + 2370 putative FtsX-related transmembrane transport protein - none -
fig|6666666.148647.peg.718 CDS NC_010729.1 785186 787561 2 + 2376 FIG00898232: hypothetical protein - none -
fig|6666666.148647.peg.719 CDS NC_010729.1 787654 788313 1 + 660 ABC transporter ATP-binding protein - none -
fig|6666666.148647.peg.720 CDS NC_010729.1 790172 788619 -2 - 1554 FIG00936050: hypothetical protein - none -
fig|6666666.148647.peg.721 CDS NC_010729.1 790450 790292 -1 - 159 hypothetical protein - none -
fig|6666666.148647.peg.722 CDS NC_010729.1 792011 790656 -2 - 1356 Succinate-semialdehyde dehydrogenase, CoA-dependent - none -
fig|6666666.148647.peg.723 CDS NC_010729.1 793322 792207 -2 - 1116 NAD-dependent 4-hydroxybutyrate dehydrogenase (EC 1.1.1.61) - none -
fig|6666666.148647.peg.724 CDS NC_010729.1 794668 793373 -1 - 1296 4-hydroxybutyrate:acetyl-CoA CoA transferase (EC 2.3.1.-) - none -
fig|6666666.148647.peg.725 CDS NC_010729.1 794958 794674 -3 - 285 hypothetical protein - none -
fig|6666666.148647.peg.726 CDS NC_010729.1 796488 795031 -3 - 1458 4-hydroxybutanoyl-CoA dehydratase (EC 4.2.1.-) / Vinylacetyl-CoA Delta-isomerase (EC 5.3.3.3) - none -
fig|6666666.148647.peg.727 CDS NC_010729.1 798241 797192 -1 - 1050 immunoreactive 42 kDa antigen PG33 - none -
fig|6666666.148647.peg.728 CDS NC_010729.1 799556 798381 -2 - 1176 immunoreactive 43 kDa antigen PG32 - none -
fig|6666666.148647.peg.729 CDS NC_010729.1 799843 799718 -1 - 126 hypothetical protein - none -
fig|6666666.148647.peg.730 CDS NC_010729.1 800836 799865 -1 - 972 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) ABC transporter alkylphosphonate (TC 3.A.1.9.1)
fig|6666666.148647.peg.731 CDS NC_010729.1 803450 800880 -2 - 2571 Glycogen phosphorylase (EC 2.4.1.1) Glycogen metabolism;
Maltose and Maltodextrin Utilization
fig|6666666.148647.peg.732 CDS NC_010729.1 803460 803885 3 + 426 hypothetical protein - none -
fig|6666666.148647.peg.733 CDS NC_010729.1 804054 804590 3 + 537 Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) Cobalamin synthesis;
Coenzyme B12 biosynthesis
fig|6666666.148647.peg.734 CDS NC_010729.1 804643 805680 1 + 1038 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) Cobalamin synthesis;
Coenzyme B12 biosynthesis
fig|6666666.148647.peg.735 CDS NC_010729.1 805687 806469 1 + 783 Cobalamin synthase (EC 2.7.8.26) Cobalamin synthesis;
Coenzyme B12 biosynthesis
fig|6666666.148647.peg.736 CDS NC_010729.1 806471 807010 2 + 540 Alpha-ribazole-5@1-phosphate phosphatase (EC 3.1.3.73) Cobalamin synthesis;
Coenzyme B12 biosynthesis;
Phosphoglycerate mutase protein family
fig|6666666.148647.peg.737 CDS NC_010729.1 807072 807896 3 + 825 Glutamate racemase (EC 5.1.1.3) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Peptidoglycan Biosynthesis
fig|6666666.148647.peg.738 CDS NC_010729.1 807914 808345 2 + 432 FIG00935976: hypothetical protein - none -
fig|6666666.148647.peg.739 CDS NC_010729.1 808380 808556 3 + 177 hypothetical protein - none -
fig|6666666.148647.peg.740 CDS NC_010729.1 811125 808579 -3 - 2547 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins Ton and Tol transport systems
fig|6666666.148647.peg.741 CDS NC_010729.1 812121 811291 -3 - 831 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase;
Potassium homeostasis
fig|6666666.148647.peg.742 CDS NC_010729.1 812922 812149 -3 - 774 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase;
Potassium homeostasis
fig|6666666.148647.peg.743 CDS NC_010729.1 813527 812943 -2 - 585 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase
fig|6666666.148647.peg.744 CDS NC_010729.1 813613 813744 1 + 132 hypothetical protein - none -
fig|6666666.148647.peg.745 CDS NC_010729.1 814257 814141 -3 - 117 hypothetical protein - none -
fig|6666666.148647.peg.746 CDS NC_010729.1 814601 814254 -2 - 348 hypothetical protein - none -
fig|6666666.148647.peg.747 CDS NC_010729.1 815219 814623 -2 - 597 Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Folate Biosynthesis
fig|6666666.148647.peg.748 CDS NC_010729.1 815516 815403 -2 - 114 Mobile element protein - none -
fig|6666666.148647.peg.749 CDS NC_010729.1 815788 820437 1 + 4650 hypothetical protein - none -
fig|6666666.148647.peg.750 CDS NC_010729.1 821642 822727 2 + 1086 Mobile element protein - none -
fig|6666666.148647.peg.751 CDS NC_010729.1 822752 822883 2 + 132 Calcium-transporting ATPase - none -
fig|6666666.148647.peg.752 CDS NC_010729.1 823807 823067 -1 - 741 Cytoplasmic copper homeostasis protein CutC Copper homeostasis: copper tolerance
fig|6666666.148647.peg.753 CDS NC_010729.1 824738 823818 -2 - 921 Magnesium and cobalt transport protein CorA Magnesium transport
fig|6666666.148647.peg.754 CDS NC_010729.1 824772 825161 3 + 390 FIG00935949: hypothetical protein - none -
fig|6666666.148647.peg.755 CDS NC_010729.1 825339 825133 -3 - 207 sensor histidine kinase - none -
fig|6666666.148647.peg.756 CDS NC_010729.1 826031 825294 -2 - 738 DNA-binding response regulator - none -
fig|6666666.148647.peg.757 CDS NC_010729.1 826263 826871 3 + 609 NLP/P60 family protein - none -
fig|6666666.148647.peg.758 CDS NC_010729.1 827257 827105 -1 - 153 hypothetical protein - none -
fig|6666666.148647.peg.759 CDS NC_010729.1 827431 827264 -1 - 168 hypothetical protein - none -
fig|6666666.148647.peg.760 CDS NC_010729.1 827560 829590 1 + 2031 prolyl oligopeptidase family protein - none -
fig|6666666.148647.peg.761 CDS NC_010729.1 829675 830301 1 + 627 hydrolase, haloacid dehalogenase-like family - none -
fig|6666666.148647.peg.762 CDS NC_010729.1 830787 830368 -3 - 420 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) ABC transporter alkylphosphonate (TC 3.A.1.9.1)
fig|6666666.148647.peg.763 CDS NC_010729.1 832172 831006 -2 - 1167 FIG00938859: hypothetical protein - none -
fig|6666666.148647.peg.764 CDS NC_010729.1 833183 832191 -2 - 993 D-alanine--D-alanine ligase (EC 6.3.2.4) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo;
cell division cluster containing FtsQ
fig|6666666.148647.peg.765 CDS NC_010729.1 834371 833250 -2 - 1122 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) RNA pseudouridine syntheses;
Ribosome biogenesis bacterial
fig|6666666.148647.peg.766 CDS NC_010729.1 835041 834385 -3 - 657 FIG00938099: hypothetical protein - none -
fig|6666666.148647.peg.767 CDS NC_010729.1 835216 835353 1 + 138 hypothetical protein - none -
fig|6666666.148647.peg.768 CDS NC_010729.1 835634 836236 2 + 603 Riboflavin synthase eubacterial/eukaryotic (EC 2.5.1.9) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster;
riboflavin to FAD
fig|6666666.148647.peg.769 CDS NC_010729.1 836233 836784 1 + 552 Nitroreductase family protein - none -
fig|6666666.148647.peg.770 CDS NC_010729.1 836843 838057 2 + 1215 Cysteine desulfurase (EC 2.8.1.7), SufS subfamily Alanine biosynthesis;
Iron-sulfur cluster assembly;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.148647.peg.771 CDS NC_010729.1 838068 838673 3 + 606 Ribonuclease HII (EC 3.1.26.4) Conserved gene cluster associated with Met-tRNA formyltransferase;
Ribonuclease H
fig|6666666.148647.peg.772 CDS NC_010729.1 838741 838926 1 + 186 FIG00936045: hypothetical protein - none -
fig|6666666.148647.peg.773 CDS NC_010729.1 838923 839375 3 + 453 tRNA-specific adenosine-34 deaminase (EC 3.5.4.-) tRNA modification Bacteria;
tRNA processing
fig|6666666.148647.peg.774 CDS NC_010729.1 839398 840321 1 + 924 Ribonuclease Z (EC 3.1.26.11) tRNA processing
fig|6666666.148647.peg.775 CDS NC_010729.1 840344 840865 2 + 522 NLP/P60 family protein - none -
fig|6666666.148647.peg.776 CDS NC_010729.1 842429 841665 -2 - 765 tRNA (guanosine(18)-2@1-O)-methyltransferase (EC 2.1.1.34) RNA methylation;
tRNA modification Bacteria
fig|6666666.148647.peg.777 CDS NC_010729.1 842912 842514 -2 - 399 Lactoylglutathione lyase (EC 4.4.1.5) Glutathione: Non-redox reactions
fig|6666666.148647.peg.778 CDS NC_010729.1 844405 843068 -1 - 1338 sensor histidine kinase - none -
fig|6666666.148647.peg.779 CDS NC_010729.1 845825 844431 -2 - 1395 Two-component system response regulator - none -
fig|6666666.148647.peg.780 CDS NC_010729.1 846186 846070 -3 - 117 hypothetical protein - none -
fig|6666666.148647.peg.781 CDS NC_010729.1 847224 846478 -3 - 747 Glycosyl transferase, group 2 family protein - none -
fig|6666666.148647.peg.782 CDS NC_010729.1 848111 847377 -2 - 735 PorT protein - none -
fig|6666666.148647.peg.783 CDS NC_010729.1 848250 848900 3 + 651 Uracil phosphoribosyltransferase (EC 2.4.2.9) De Novo Pyrimidine Synthesis;
pyrimidine conversions
fig|6666666.148647.peg.784 CDS NC_010729.1 848884 850791 1 + 1908 putative collagenase - none -
fig|6666666.148647.peg.785 CDS NC_010729.1 851431 853893 1 + 2463 DNA topoisomerase I (EC 5.99.1.2) Conserved gene cluster associated with Met-tRNA formyltransferase;
DNA topoisomerases, Type I, ATP-independent
fig|6666666.148647.peg.786 CDS NC_010729.1 853897 854655 1 + 759 tRNA pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses;
tRNA modification Bacteria;
tRNA processing
fig|6666666.148647.peg.787 CDS NC_010729.1 855387 855869 3 + 483 DNA-binding protein, histone-like family - none -
fig|6666666.148647.peg.788 CDS NC_010729.1 855905 857338 2 + 1434 hypothetical protein - none -
fig|6666666.148647.peg.789 CDS NC_010729.1 857775 857897 3 + 123 hypothetical protein - none -
fig|6666666.148647.peg.790 CDS NC_010729.1 859363 858011 -1 - 1353 FIG00936650: hypothetical protein - none -
fig|6666666.148647.peg.791 CDS NC_010729.1 860060 859413 -2 - 648 hypothetical protein - none -
fig|6666666.148647.peg.792 CDS NC_010729.1 862310 860157 -2 - 2154 Dipeptidyl carboxypeptidase Dcp (EC 3.4.15.5) Protein degradation
fig|6666666.148647.peg.793 CDS NC_010729.1 864475 862322 -1 - 2154 FIG00935638: hypothetical protein - none -
fig|6666666.148647.peg.794 CDS NC_010729.1 864734 865636 2 + 903 Mobile element protein - none -
fig|6666666.148647.peg.795 CDS NC_010729.1 866193 867569 3 + 1377 Cell division trigger factor (EC 5.2.1.8) Bacterial Cell Division
fig|6666666.148647.peg.796 CDS NC_010729.1 870452 868221 -2 - 2232 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) Bacterial RNA-metabolizing Zn-dependent hydrolases
fig|6666666.148647.peg.797 CDS NC_010729.1 873298 870605 -1 - 2694 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) Glycogen metabolism;
Maltose and Maltodextrin Utilization
fig|6666666.148647.peg.798 CDS NC_010729.1 874429 873323 -1 - 1107 FIG00935657: hypothetical protein - none -
fig|6666666.148647.peg.799 CDS NC_010729.1 876714 874603 -3 - 2112 fibronectin type III domain protein - none -
fig|6666666.148647.peg.800 CDS NC_010729.1 877020 877154 3 + 135 hypothetical protein - none -
fig|6666666.148647.peg.801 CDS NC_010729.1 877161 877298 3 + 138 hypothetical protein - none -
fig|6666666.148647.peg.802 CDS NC_010729.1 878915 877785 -2 - 1131 FIG00936174: hypothetical protein - none -
fig|6666666.148647.peg.803 CDS NC_010729.1 881127 879406 -3 - 1722 Acyl-CoA dehydrogenase (EC 1.3.8.7) - none -
fig|6666666.148647.peg.804 CDS NC_010729.1 882158 881139 -2 - 1020 Electron transfer flavoprotein, alpha subunit Acetyl-CoA fermentation to Butyrate;
Lysine fermentation
fig|6666666.148647.peg.805 CDS NC_010729.1 883033 882167 -1 - 867 Electron transfer flavoprotein, beta subunit Acetyl-CoA fermentation to Butyrate;
Lysine fermentation
fig|6666666.148647.peg.806 CDS NC_010729.1 883843 883124 -1 - 720 TsaB protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Ribosome biogenesis bacterial;
YgjD and YeaZ;
YjeE
fig|6666666.148647.peg.807 CDS NC_010729.1 884546 884073 -2 - 474 FIG00935740: hypothetical protein - none -
fig|6666666.148647.peg.808 CDS NC_010729.1 885176 884562 -2 - 615 Biopolymer transport exbD protein. - none -
fig|6666666.148647.peg.809 CDS NC_010729.1 885682 885212 -1 - 471 FIG00936036: hypothetical protein - none -
fig|6666666.148647.peg.810 CDS NC_010729.1 886503 885691 -3 - 813 MotA/TolQ/ExbB proton channel family protein Ton and Tol transport systems
fig|6666666.148647.peg.811 CDS NC_010729.1 887654 886851 -2 - 804 Putative deoxyribonuclease YcfH YcfH
fig|6666666.148647.peg.812 CDS NC_010729.1 888702 887725 -3 - 978 Dimethylallyltransferase (EC 2.5.1.1) / (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10) / Geranylgeranyl diphosphate synthase (EC 2.5.1.29) Isoprenoid Biosynthesis;
Isoprenoid Biosynthesis;
Isoprenoid Biosynthesis: Interconversions;
Isoprenoinds for Quinones;
Isoprenoinds for Quinones;
Isoprenoinds for Quinones;
Polyprenyl Diphosphate Biosynthesis;
Polyprenyl Diphosphate Biosynthesis
fig|6666666.148647.peg.813 CDS NC_010729.1 889604 888873 -2 - 732 Ferric siderophore transport system, periplasmic binding protein TonB Hemin transport system;
Ton and Tol transport systems
fig|6666666.148647.peg.814 CDS NC_010729.1 889680 889543 -3 - 138 hypothetical protein - none -
fig|6666666.148647.peg.815 CDS NC_010729.1 889699 889941 1 + 243 FIG00935549: hypothetical protein - none -
fig|6666666.148647.peg.816 CDS NC_010729.1 892650 890017 -3 - 2634 FIG00936488: hypothetical protein - none -
fig|6666666.148647.peg.817 CDS NC_010729.1 893392 892676 -1 - 717 FIG00935912: hypothetical protein - none -
fig|6666666.148647.peg.818 CDS NC_010729.1 894557 893373 -2 - 1185 GTP-binding protein Obg CBSS-176279.3.peg.868;
Universal GTPases
fig|6666666.148647.peg.819 CDS NC_010729.1 895151 894567 -2 - 585 Adenylate kinase (EC 2.7.4.3) Purine conversions
fig|6666666.148647.peg.820 CDS NC_010729.1 895697 895152 -2 - 546 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) Cell division-ribosomal stress proteins cluster;
Folate biosynthesis cluster;
Purine conversions
fig|6666666.148647.peg.821 CDS NC_010729.1 896282 898279 2 + 1998 Fructose-1,6-bisphosphatase, Bacillus type (EC 3.1.3.11) Glycolysis and Gluconeogenesis
fig|6666666.148647.peg.822 CDS NC_010729.1 898435 900789 1 + 2355 Monofunctional biosynthetic peptidoglycan transglycosylase (EC 2.4.2.-) Peptidoglycan Biosynthesis
fig|6666666.148647.peg.823 CDS NC_010729.1 900837 901547 3 + 711 FIG005935: membrane protein - none -
fig|6666666.148647.peg.824 CDS NC_010729.1 904489 901712 -1 - 2778 Leucyl-tRNA synthetase (EC 6.1.1.4) tRNA aminoacylation, Leu
fig|6666666.148647.peg.825 CDS NC_010729.1 904586 904750 2 + 165 hypothetical protein - none -
fig|6666666.148647.peg.826 CDS NC_010729.1 905691 905876 3 + 186 hypothetical protein - none -
fig|6666666.148647.peg.827 CDS NC_010729.1 907585 906026 -1 - 1560 NAD-utilizing dehydrogenases - none -
fig|6666666.148647.peg.828 CDS NC_010729.1 909021 907570 -3 - 1452 tRNA nucleotidyltransferase (EC 2.7.7.21) (EC 2.7.7.25) tRNA nucleotidyltransferase
fig|6666666.148647.peg.829 CDS NC_010729.1 911010 909661 -3 - 1350 Dihydrolipoamide dehydrogenase (EC 1.8.1.4) 5-FCL-like protein;
Glycine cleavage system;
TCA Cycle
fig|6666666.148647.peg.830 CDS NC_010729.1 911806 911015 -1 - 792 Glucosamine-6-phosphate deaminase (EC 3.5.99.6) - none -
fig|6666666.148647.peg.831 CDS NC_010729.1 913055 911844 -2 - 1212 Alkyldihydroxyacetonephosphate synthase (EC 2.5.1.26) - none -
fig|6666666.148647.peg.832 CDS NC_010729.1 913937 913086 -2 - 852 Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-) Lipoprotein Biosynthesis
fig|6666666.148647.peg.833 CDS NC_010729.1 914879 913974 -2 - 906 Meso-diaminopimelate D-dehydrogenase (EC 1.4.1.16) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.148647.peg.834 CDS NC_010729.1 915963 914917 -3 - 1047 Transcription termination protein NusB Riboflavin synthesis cluster;
Transcription factors bacterial
fig|6666666.148647.peg.835 CDS NC_010729.1 916172 916059 -2 - 114 hypothetical protein - none -
fig|6666666.148647.peg.836 CDS NC_010729.1 924147 916648 -3 - 7500 FIG00935527: hypothetical protein - none -
fig|6666666.148647.peg.837 CDS NC_010729.1 924795 924187 -3 - 609 Holliday junction DNA helicase RuvA RuvABC plus a hypothetical
fig|6666666.148647.peg.838 CDS NC_010729.1 925022 925174 2 + 153 hypothetical protein - none -
fig|6666666.148647.peg.839 CDS NC_010729.1 926324 925239 -2 - 1086 Mobile element protein - none -
fig|6666666.148647.peg.840 CDS NC_010729.1 926592 926428 -3 - 165 FIG00936597: hypothetical protein - none -
fig|6666666.148647.peg.841 CDS NC_010729.1 929554 926879 -1 - 2676 putative TonB-dependent receptor - none -
fig|6666666.148647.peg.842 CDS NC_010729.1 930194 929571 -2 - 624 FIG00936643: hypothetical protein - none -
fig|6666666.148647.peg.843 CDS NC_010729.1 930596 930384 -2 - 213 hypothetical protein - none -
fig|6666666.148647.peg.844 CDS NC_010729.1 931980 930874 -3 - 1107 Mobile element protein - none -
fig|6666666.148647.peg.845 CDS NC_010729.1 932119 932283 1 + 165 Exodeoxyribonuclease VII small subunit (EC 3.1.11.6) DNA repair, bacterial;
Purine salvage cluster
fig|6666666.148647.peg.846 CDS NC_010729.1 932280 932948 3 + 669 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC 2.7.7.60) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis;
Stationary phase repair cluster
fig|6666666.148647.peg.847 CDS NC_010729.1 934819 933734 -1 - 1086 Mobile element protein - none -
fig|6666666.148647.peg.848 CDS NC_010729.1 935115 935576 3 + 462 FIG00936134: hypothetical protein - none -
fig|6666666.148647.peg.849 CDS NC_010729.1 935603 936061 2 + 459 FIG00935622: hypothetical protein - none -
fig|6666666.148647.peg.850 CDS NC_010729.1 936169 936041 -1 - 129 hypothetical protein - none -
fig|6666666.148647.peg.851 CDS NC_010729.1 936309 936166 -3 - 144 hypothetical protein - none -
fig|6666666.148647.peg.852 CDS NC_010729.1 936446 936778 2 + 333 FIG00935850: hypothetical protein - none -
fig|6666666.148647.peg.853 CDS NC_010729.1 936785 937306 2 + 522 FIG00936328: hypothetical protein - none -
fig|6666666.148647.peg.854 CDS NC_010729.1 937319 937546 2 + 228 hypothetical protein - none -
fig|6666666.148647.peg.855 CDS NC_010729.1 937569 937850 3 + 282 FIG00935685: hypothetical protein - none -
fig|6666666.148647.peg.856 CDS NC_010729.1 937863 938165 3 + 303 hypothetical protein - none -
fig|6666666.148647.peg.857 CDS NC_010729.1 938178 938309 3 + 132 FIG00937340: hypothetical protein - none -
fig|6666666.148647.peg.858 CDS NC_010729.1 938363 938593 2 + 231 FIG00937340: hypothetical protein - none -
fig|6666666.148647.peg.859 CDS NC_010729.1 940173 938887 -3 - 1287 surface antigen, putative - none -
fig|6666666.148647.peg.860 CDS NC_010729.1 940556 940416 -2 - 141 hypothetical protein - none -
fig|6666666.148647.peg.861 CDS NC_010729.1 941138 941025 -2 - 114 hypothetical protein - none -
fig|6666666.148647.peg.862 CDS NC_010729.1 941311 941192 -1 - 120 hypothetical protein - none -
fig|6666666.148647.peg.863 CDS NC_010729.1 942576 941353 -3 - 1224 A/G-specific adenine glycosylase (EC 3.2.2.-) DNA repair, bacterial
fig|6666666.148647.peg.864 CDS NC_010729.1 942626 943564 2 + 939 thiamine biosynthesis protein, putative - none -
fig|6666666.148647.peg.865 CDS NC_010729.1 943616 944314 2 + 699 Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB Alkanesulfonates Utilization
fig|6666666.148647.peg.866 CDS NC_010729.1 944311 945060 1 + 750 ABC transporter, permease protein - none -
fig|6666666.148647.peg.867 CDS NC_010729.1 945110 946159 2 + 1050 FIG00935497: hypothetical protein - none -
fig|6666666.148647.peg.868 CDS NC_010729.1 946343 946996 2 + 654 amino acid exporter, putative - none -
fig|6666666.148647.peg.869 CDS NC_010729.1 949814 947073 -2 - 2742 Type III restriction-modification enzyme helicase subunit - none -
fig|6666666.148647.peg.870 CDS NC_010729.1 951474 949807 -3 - 1668 Type III restriction-modification system methylation subunit (EC 2.1.1.72) Restriction-Modification System
fig|6666666.148647.peg.871 CDS NC_010729.1 951638 952540 2 + 903 Mobile element protein - none -
fig|6666666.148647.peg.872 CDS NC_010729.1 952701 954218 3 + 1518 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) 5-FCL-like protein;
De Novo Purine Biosynthesis;
De Novo Purine Biosynthesis
fig|6666666.148647.peg.873 CDS NC_010729.1 954321 955340 3 + 1020 Rod shape-determining protein MreB Bacterial Cell Division;
Bacterial Cytoskeleton;
Bacterial cell division cluster
fig|6666666.148647.peg.874 CDS NC_010729.1 955378 956265 1 + 888 Rod shape-determining protein MreC Bacterial Cell Division;
Bacterial Cytoskeleton;
Bacterial cell division cluster;
CBSS-354.1.peg.2917
fig|6666666.148647.peg.875 CDS NC_010729.1 956265 956783 3 + 519 Rod shape-determining protein MreD Bacterial Cell Division;
Bacterial Cytoskeleton;
Bacterial cell division cluster;
CBSS-354.1.peg.2917
fig|6666666.148647.peg.876 CDS NC_010729.1 956776 958641 1 + 1866 Penicillin-binding protein 2 (PBP-2) 16S rRNA modification within P site of ribosome;
Bacterial cell division cluster;
CBSS-83331.1.peg.3039;
Peptidoglycan Biosynthesis
fig|6666666.148647.peg.877 CDS NC_010729.1 958631 960088 2 + 1458 Rod shape-determining protein RodA Bacterial Cytoskeleton;
Bacterial cell division cluster;
Peptidoglycan Biosynthesis
fig|6666666.148647.peg.878 CDS NC_010729.1 961231 960116 -1 - 1116 FIG00936610: hypothetical protein - none -
fig|6666666.148647.peg.879 CDS NC_010729.1 961422 961562 3 + 141 hypothetical protein - none -
fig|6666666.148647.peg.880 CDS NC_010729.1 961589 962017 2 + 429 DNA-binding protein, histone-like family - none -
fig|6666666.148647.peg.881 CDS NC_010729.1 962082 962792 3 + 711 FIG00936004: hypothetical protein - none -
fig|6666666.148647.peg.882 CDS NC_010729.1 962829 963755 3 + 927 Chromosome segregation ATPases - none -
fig|6666666.148647.peg.883 CDS NC_010729.1 963939 966518 3 + 2580 DNA gyrase subunit A (EC 5.99.1.3) Cell Division Subsystem including YidCD;
DNA gyrase subunits;
DNA replication cluster 1;
DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.148647.peg.884 CDS NC_010729.1 966552 967754 3 + 1203 FIG00935679: hypothetical protein - none -
fig|6666666.148647.peg.885 CDS NC_010729.1 968346 971243 3 + 2898 helicase (Snf2/Rad54 family) - none -
fig|6666666.148647.peg.886 CDS NC_010729.1 971275 971727 1 + 453 hypothetical protein - none -
fig|6666666.148647.peg.887 CDS NC_010729.1 972715 971813 -1 - 903 Mobile element protein - none -
fig|6666666.148647.peg.888 CDS NC_010729.1 974576 973197 -2 - 1380 Tryptophanase (EC 4.1.99.1) - none -
fig|6666666.148647.peg.889 CDS NC_010729.1 975974 974829 -2 - 1146 AP endonuclease domain protein - none -
fig|6666666.148647.peg.890 CDS NC_010729.1 976885 975971 -1 - 915 GlpG protein (membrane protein of glp regulon) - none -
fig|6666666.148647.peg.891 CDS NC_010729.1 977585 976869 -2 - 717 GlpG protein (membrane protein of glp regulon) - none -
fig|6666666.148647.peg.892 CDS NC_010729.1 980233 977612 -1 - 2622 Organic solvent tolerance protein precursor ECSIG4-SIG7
fig|6666666.148647.peg.893 CDS NC_010729.1 981476 980940 -2 - 537 nitroimidazole resistance protein, putative - none -
fig|6666666.148647.peg.894 CDS NC_010729.1 981739 982704 1 + 966 Cobalt-zinc-cadmium resistance protein CzcD Cobalt-zinc-cadmium resistance
fig|6666666.148647.peg.895 CDS NC_010729.1 983219 982701 -2 - 519 FIG00935651: hypothetical protein - none -
fig|6666666.148647.peg.896 CDS NC_010729.1 984994 983309 -1 - 1686 Predicted cobalt transporter in Bacteroides_Porphyromonas Coenzyme B12 biosynthesis
fig|6666666.148647.peg.897 CDS NC_010729.1 986547 986434 -3 - 114 hypothetical protein - none -
fig|6666666.148647.peg.898 CDS NC_010729.1 986905 989508 1 + 2604 Thiamin-regulated outer membrane receptor Omr1 Thiamin biosynthesis
fig|6666666.148647.peg.899 CDS NC_010729.1 989941 990882 1 + 942 Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9) Fatty Acid Biosynthesis FASII
fig|6666666.148647.peg.900 CDS NC_010729.1 991103 990891 -2 - 213 hypothetical protein - none -
fig|6666666.148647.peg.901 CDS NC_010729.1 991217 992824 2 + 1608 Fumarate hydratase class I (EC 4.2.1.2) TCA Cycle
fig|6666666.148647.peg.902 CDS NC_010729.1 992863 994755 1 + 1893 DNA polymerase III subunits gamma and tau (EC 2.7.7.7) DNA processing cluster
fig|6666666.148647.peg.903 CDS NC_010729.1 997218 995698 -3 - 1521 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) CBSS-84588.1.peg.1247;
Metallocarboxypeptidases (EC 3.4.17.-);
Murein Hydrolases;
Peptidoglycan Biosynthesis
fig|6666666.148647.peg.904 CDS NC_010729.1 999113 997443 -2 - 1671 Peptidylarginine deiminase precursor (EC 3.5.3.-) - none -
fig|6666666.148647.peg.905 CDS NC_010729.1 1002860 1000329 -2 - 2532 FIG00935743: hypothetical protein - none -
fig|6666666.148647.peg.906 CDS NC_010729.1 1003485 1003000 -3 - 486 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster
fig|6666666.148647.peg.907 CDS NC_010729.1 1004263 1003577 -1 - 687 FIG00936184: hypothetical protein - none -
fig|6666666.148647.peg.908 CDS NC_010729.1 1005132 1004449 -3 - 684 DNA-binding response regulator, LuxR family - none -
fig|6666666.148647.peg.909 CDS NC_010729.1 1006953 1005145 -3 - 1809 sensor histidine kinase - none -
fig|6666666.148647.peg.910 CDS NC_010729.1 1007248 1007051 -1 - 198 Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1) De Novo Pyrimidine Synthesis
fig|6666666.148647.peg.911 CDS NC_010729.1 1007921 1007223 -2 - 699 Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1) De Novo Pyrimidine Synthesis
fig|6666666.148647.peg.912 CDS NC_010729.1 1008754 1007957 -1 - 798 Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1) De Novo Pyrimidine Synthesis
fig|6666666.148647.peg.913 CDS NC_010729.1 1009246 1008806 -1 - 441 transcriptional regulator, putative - none -
fig|6666666.148647.peg.914 CDS NC_010729.1 1011320 1010418 -2 - 903 Mobile element protein - none -
fig|6666666.148647.peg.915 CDS NC_010729.1 1012606 1011518 -1 - 1089 FIG00935887: hypothetical protein - none -
fig|6666666.148647.peg.916 CDS NC_010729.1 1013337 1012705 -3 - 633 Ribonuclease HI-related protein 3 Ribonuclease H
fig|6666666.148647.peg.917 CDS NC_010729.1 1014261 1013383 -3 - 879 TPR domain protein - none -
fig|6666666.148647.peg.918 CDS NC_010729.1 1014262 1014387 1 + 126 hypothetical protein - none -
fig|6666666.148647.peg.919 CDS NC_010729.1 1014855 1014409 -3 - 447 carbonic anhydrase, family 3 - none -
fig|6666666.148647.peg.920 CDS NC_010729.1 1016699 1014957 -2 - 1743 Xaa-Pro aminopeptidase (EC 3.4.11.9) Aminopeptidases (EC 3.4.11.-)
fig|6666666.148647.peg.921 CDS NC_010729.1 1018340 1016793 -2 - 1548 Ribosylnicotinamide kinase (EC 2.7.1.22) homolog / Unknown conserved in Flavobacteria - none -
fig|6666666.148647.peg.922 CDS NC_010729.1 1018923 1020845 3 + 1923 Chaperone protein DnaK GroEL GroES;
Heat shock dnaK gene cluster extended;
Protein chaperones
fig|6666666.148647.peg.923 CDS NC_010729.1 1021623 1022885 3 + 1263 phage integrase family protein - none -
fig|6666666.148647.peg.924 CDS NC_010729.1 1023531 1024616 3 + 1086 Mobile element protein - none -
fig|6666666.148647.peg.925 CDS NC_010729.1 1025738 1025094 -2 - 645 hypothetical protein - none -
fig|6666666.148647.peg.926 CDS NC_010729.1 1026238 1026375 1 + 138 hypothetical protein - none -
fig|6666666.148647.peg.927 CDS NC_010729.1 1026426 1026593 3 + 168 hypothetical protein - none -
fig|6666666.148647.peg.928 CDS NC_010729.1 1026608 1027813 2 + 1206 FIG00939579: hypothetical protein - none -
fig|6666666.148647.peg.929 CDS NC_010729.1 1028044 1028931 1 + 888 DNA primase (EC 2.7.7.-) CBSS-349161.4.peg.2417;
Macromolecular synthesis operon
fig|6666666.148647.peg.930 CDS NC_010729.1 1029061 1029423 1 + 363 mobilization protein - none -
fig|6666666.148647.peg.931 CDS NC_010729.1 1029413 1030354 2 + 942 Mobilization protein BmgA - none -
fig|6666666.148647.peg.932 CDS NC_010729.1 1030380 1031102 3 + 723 hypothetical protein - none -
fig|6666666.148647.peg.933 CDS NC_010729.1 1031220 1031435 3 + 216 transcriptional regulator, putative - none -
fig|6666666.148647.peg.934 CDS NC_010729.1 1031507 1032715 2 + 1209 FIG036446: hypothetical protein - none -
fig|6666666.148647.peg.935 CDS NC_010729.1 1032705 1034606 3 + 1902 Bipolar DNA helicase HerA - none -
fig|6666666.148647.peg.936 CDS NC_010729.1 1034802 1035848 3 + 1047 hypothetical protein - none -
fig|6666666.148647.peg.937 CDS NC_010729.1 1035904 1036683 1 + 780 Transcriptional regulator, ArsR family - none -
fig|6666666.148647.peg.938 CDS NC_010729.1 1037241 1037696 3 + 456 acetyltransferase, GNAT family - none -
fig|6666666.148647.peg.939 CDS NC_010729.1 1037777 1039207 2 + 1431 ATP-dependent DNA helicase - none -
fig|6666666.148647.peg.940 CDS NC_010729.1 1039361 1040263 2 + 903 Mobile element protein - none -
fig|6666666.148647.peg.941 CDS NC_010729.1 1040509 1042389 1 + 1881 ATPase involved in DNA repair - none -
fig|6666666.148647.peg.942 CDS NC_010729.1 1042630 1043583 1 + 954 glycerate dehydrogenase - none -
fig|6666666.148647.peg.943 CDS NC_010729.1 1043721 1043605 -3 - 117 hypothetical protein - none -
fig|6666666.148647.peg.944 CDS NC_010729.1 1043970 1045118 3 + 1149 8-amino-7-oxononanoate synthase (EC 2.3.1.47) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.148647.peg.945 CDS NC_010729.1 1045118 1045537 2 + 420 hypothetical protein - none -
fig|6666666.148647.peg.946 CDS NC_010729.1 1045644 1045856 3 + 213 Mobile element protein - none -
fig|6666666.148647.peg.947 CDS NC_010729.1 1046329 1047720 1 + 1392 FIG00936287: hypothetical protein - none -
fig|6666666.148647.peg.948 CDS NC_010729.1 1047725 1048531 2 + 807 FIG00936316: hypothetical protein - none -
fig|6666666.148647.peg.949 CDS NC_010729.1 1048552 1050087 1 + 1536 Probable poly(beta-D-mannuronate) O-acetylase (EC 2.3.1.-) - none -
fig|6666666.148647.peg.950 CDS NC_010729.1 1051143 1050241 -3 - 903 Mobile element protein - none -
fig|6666666.148647.peg.951 CDS NC_010729.1 1052360 1052959 2 + 600 hypothetical protein - none -
fig|6666666.148647.peg.952 CDS NC_010729.1 1053000 1055405 3 + 2406 Predicted exporter of the RND superfamily - none -
fig|6666666.148647.peg.953 CDS NC_010729.1 1055483 1056274 2 + 792 FIG00935715: hypothetical protein - none -
fig|6666666.148647.peg.954 CDS NC_010729.1 1056278 1057555 2 + 1278 FIG00936125: hypothetical protein - none -
fig|6666666.148647.peg.955 CDS NC_010729.1 1057580 1059334 2 + 1755 ABC transporter ATP-binding protein - none -
fig|6666666.148647.peg.956 CDS NC_010729.1 1059381 1061087 3 + 1707 ABC transporter, ATP-binding protein, putative - none -
fig|6666666.148647.peg.957 CDS NC_010729.1 1061610 1061257 -3 - 354 Mobile element protein - none -
fig|6666666.148647.peg.958 CDS NC_010729.1 1061884 1063593 1 + 1710 Putative carboxy-terminal processing protease (EC 3.4.21.102) - none -
fig|6666666.148647.peg.959 CDS NC_010729.1 1063828 1063706 -1 - 123 IS1478 transposase - none -
fig|6666666.148647.peg.960 CDS NC_010729.1 1064017 1063901 -1 - 117 ISPg6, transposase - none -
fig|6666666.148647.peg.961 CDS NC_010729.1 1064180 1065082 2 + 903 Mobile element protein - none -
fig|6666666.148647.peg.962 CDS NC_010729.1 1065848 1065426 -2 - 423 transposase, IS4 family protein - none -
fig|6666666.148647.peg.963 CDS NC_010729.1 1066921 1066019 -1 - 903 Mobile element protein - none -
fig|6666666.148647.peg.964 CDS NC_010729.1 1067300 1067028 -2 - 273 hypothetical protein - none -
fig|6666666.148647.peg.965 CDS NC_010729.1 1067844 1067323 -3 - 522 hypothetical protein - none -
fig|6666666.148647.peg.966 CDS NC_010729.1 1068276 1067962 -3 - 315 transcriptional regulator, putative - none -
fig|6666666.148647.peg.967 CDS NC_010729.1 1069264 1068395 -1 - 870 Cell division inhibitor Slr1223 (YfcH in EC), contains epimerase/dehydratase and DUF1731 domains - none -
fig|6666666.148647.peg.968 CDS NC_010729.1 1069360 1069476 1 + 117 hypothetical protein - none -
fig|6666666.148647.peg.969 CDS NC_010729.1 1070862 1072823 3 + 1962 Threonyl-tRNA synthetase (EC 6.1.1.3) tRNA aminoacylation, Thr
fig|6666666.148647.peg.970 CDS NC_010729.1 1072925 1073563 2 + 639 Translation initiation factor 3 Mycobacterium virulence operon involved in protein synthesis (LSU ribosomal proteins);
Translation initiation factors bacterial
fig|6666666.148647.peg.971 CDS NC_010729.1 1073607 1073804 3 + 198 LSU ribosomal protein L35p Mycobacterium virulence operon involved in protein synthesis (LSU ribosomal proteins);
Ribosome LSU bacterial
fig|6666666.148647.peg.972 CDS NC_010729.1 1074043 1074264 1 + 222 LSU ribosomal protein L20p Mycobacterium virulence operon involved in protein synthesis (LSU ribosomal proteins);
Ribosome LSU bacterial
fig|6666666.148647.peg.973 CDS NC_010729.1 1074727 1075296 1 + 570 Mobile element protein - none -
fig|6666666.148647.peg.974 CDS NC_010729.1 1075535 1075942 2 + 408 Mobile element protein - none -
fig|6666666.148647.peg.975 CDS NC_010729.1 1077045 1076269 -3 - 777 FIG00936351: hypothetical protein - none -
fig|6666666.148647.peg.976 CDS NC_010729.1 1077621 1077061 -3 - 561 FIG00935713: hypothetical protein - none -
fig|6666666.148647.peg.977 CDS NC_010729.1 1078117 1077611 -1 - 507 RNA polymerase sigma-70 factor, ECF subfamily - none -
fig|6666666.148647.peg.978 CDS NC_010729.1 1078414 1079499 1 + 1086 Mobile element protein - none -
fig|6666666.148647.peg.979 CDS NC_010729.1 1082331 1079830 -3 - 2502 FIG00936324: hypothetical protein - none -
fig|6666666.148647.peg.980 CDS NC_010729.1 1082434 1082300 -1 - 135 hypothetical protein - none -
fig|6666666.148647.peg.981 CDS NC_010729.1 1082447 1082596 2 + 150 hypothetical protein - none -
fig|6666666.148647.peg.982 CDS NC_010729.1 1085688 1083418 -3 - 2271 FIG00936690: hypothetical protein - none -
fig|6666666.148647.peg.983 CDS NC_010729.1 1086519 1085770 -3 - 750 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) Cluster containing Alanyl-tRNA synthetase;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.148647.peg.984 CDS NC_010729.1 1087187 1086516 -2 - 672 2-heptaprenyl-1,4-naphthoquinone methyltransferase (EC 2.1.1.163) - none -
fig|6666666.148647.peg.985 CDS NC_010729.1 1088226 1087285 -3 - 942 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) De Novo Purine Biosynthesis
fig|6666666.148647.peg.986 CDS NC_010729.1 1089248 1088283 -2 - 966 Phosphate starvation-inducible protein PhoH, predicted ATPase CBSS-56780.10.peg.1536;
CBSS-56780.10.peg.1536;
Glycyl-tRNA synthetase containing cluster;
Phosphate metabolism;
Phosphate metabolism;
tRNA-methylthiotransferase containing cluster;
tRNA-methylthiotransferase containing cluster
fig|6666666.148647.peg.987 CDS NC_010729.1 1092210 1089895 -3 - 2316 Alpha-1,2-mannosidase Mannose Metabolism
fig|6666666.148647.peg.988 CDS NC_010729.1 1092349 1093566 1 + 1218 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) CBSS-211586.1.peg.2832;
Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.148647.peg.989 CDS NC_010729.1 1094888 1093971 -2 - 918 Mrr restriction system protein - none -
fig|6666666.148647.peg.990 CDS NC_010729.1 1095672 1095514 -3 - 159 hypothetical protein - none -
fig|6666666.148647.peg.991 CDS NC_010729.1 1096030 1096656 1 + 627 Phosphatidylserine decarboxylase (EC 4.1.1.65) - none -
fig|6666666.148647.peg.992 CDS NC_010729.1 1096658 1097368 2 + 711 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) - none -
fig|6666666.148647.peg.993 CDS NC_010729.1 1097435 1097680 2 + 246 FIG00936628: hypothetical protein - none -
fig|6666666.148647.peg.994 CDS NC_010729.1 1097941 1097822 -1 - 120 hypothetical protein - none -
fig|6666666.148647.peg.995 CDS NC_010729.1 1097961 1099442 3 + 1482 Prolyl-tRNA synthetase (EC 6.1.1.15), archaeal/eukaryal type tRNA aminoacylation, Pro
fig|6666666.148647.peg.996 CDS NC_010729.1 1099497 1099826 3 + 330 FIG00897068: hypothetical protein - none -
fig|6666666.148647.peg.997 CDS NC_010729.1 1099835 1100608 2 + 774 tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33) RNA methylation;
tRNA modification Bacteria
fig|6666666.148647.peg.998 CDS NC_010729.1 1100628 1101746 3 + 1119 Septum site-determining protein MinD Bacterial Cell Division;
Bacterial Cytoskeleton;
Bacterial cell division cluster;
Septum site-determining cluster Min
fig|6666666.148647.peg.999 CDS NC_010729.1 1102252 1103634 1 + 1383 Inner membrane protein YihY, formerly thought to be RNase BN LMPTP YfkJ cluster;
Riboflavin synthesis cluster
fig|6666666.148647.peg.1000 CDS NC_010729.1 1104639 1103668 -3 - 972 Riboflavin kinase (EC 2.7.1.26) / FMN adenylyltransferase (EC 2.7.7.2) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin, FMN and FAD metabolism in plants;
riboflavin to FAD;
riboflavin to FAD
fig|6666666.148647.peg.1001 CDS NC_010729.1 1105922 1104627 -2 - 1296 peptidase, M23/M37 family, putative - none -
fig|6666666.148647.peg.1002 CDS NC_010729.1 1106794 1105934 -1 - 861 FIG00935705: hypothetical protein - none -
fig|6666666.148647.peg.1003 CDS NC_010729.1 1107309 1106794 -3 - 516 FIG00898077: hypothetical protein - none -
fig|6666666.148647.peg.1004 CDS NC_010729.1 1108532 1107351 -2 - 1182 TPR domain protein - none -
fig|6666666.148647.peg.1005 CDS NC_010729.1 1108994 1108560 -2 - 435 Deoxyuridine 5@1-triphosphate nucleotidohydrolase (EC 3.6.1.23) Housecleaning nucleoside triphosphate pyrophosphatases;
Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.148647.peg.1006 CDS NC_010729.1 1110796 1109051 -1 - 1746 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (EC 1.17.7.1) CBSS-83331.1.peg.3039;
Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.148647.peg.1007 CDS NC_010729.1 1111476 1110970 -3 - 507 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) De Novo Purine Biosynthesis
fig|6666666.148647.peg.1008 CDS NC_010729.1 1111857 1111477 -3 - 381 Glycine cleavage system H protein CBSS-315749.4.peg.3658;
Glycine and Serine Utilization;
Glycine cleavage system
fig|6666666.148647.peg.1009 CDS NC_010729.1 1113032 1112025 -2 - 1008 DNA polymerase III delta subunit (EC 2.7.7.7) - none -
fig|6666666.148647.peg.1010 CDS NC_010729.1 1113827 1113051 -2 - 777 AMP nucleosidase (EC 3.2.2.4) Purine conversions
fig|6666666.148647.peg.1011 CDS NC_010729.1 1113896 1114369 2 + 474 FIG00936304: hypothetical protein - none -
fig|6666666.148647.peg.1012 CDS NC_010729.1 1114372 1115331 1 + 960 ABC transporter, ATP-binding protein - none -
fig|6666666.148647.peg.1013 CDS NC_010729.1 1115372 1116664 2 + 1293 ABC transporter, permease protein, putative - none -
fig|6666666.148647.peg.1014 CDS NC_010729.1 1116813 1116655 -3 - 159 hypothetical protein - none -
fig|6666666.148647.peg.1015 CDS NC_010729.1 1117903 1117001 -1 - 903 Mobile element protein - none -
fig|6666666.148647.peg.1016 CDS NC_010729.1 1118534 1119226 2 + 693 Mobile element protein - none -
fig|6666666.148647.peg.1017 CDS NC_010729.1 1119251 1119556 2 + 306 hypothetical protein - none -
fig|6666666.148647.peg.1018 CDS NC_010729.1 1119562 1122312 1 + 2751 Calcium-transporting ATPase - none -
fig|6666666.148647.peg.1019 CDS NC_010729.1 1122312 1123034 3 + 723 FIG00935511: hypothetical protein - none -
fig|6666666.148647.peg.1020 CDS NC_010729.1 1123055 1124356 2 + 1302 Xanthine/uracil/thiamine/ascorbate permease family protein Purine Utilization
fig|6666666.148647.peg.1021 CDS NC_010729.1 1124385 1125209 3 + 825 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148) A Gammaproteobacteria Cluster Relating to Translation;
Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.148647.peg.1022 CDS NC_010729.1 1125188 1127092 2 + 1905 putative Fe-S oxidoreductase - none -
fig|6666666.148647.peg.1023 CDS NC_010729.1 1129459 1127300 -1 - 2160 Translation elongation factor G-related protein Translation elongation factor G family;
Translation elongation factors bacterial
fig|6666666.148647.peg.1024 CDS NC_010729.1 1130848 1129703 -1 - 1146 DNA polymerase III delta prime subunit (EC 2.7.7.7) - none -
fig|6666666.148647.peg.1025 CDS NC_010729.1 1131314 1131955 2 + 642 FIG00936453: hypothetical protein - none -
fig|6666666.148647.peg.1026 CDS NC_010729.1 1131963 1132352 3 + 390 FIG00935959: hypothetical protein - none -
fig|6666666.148647.peg.1027 CDS NC_010729.1 1132404 1133570 3 + 1167 AAA+ superfamily protein - none -
fig|6666666.148647.peg.1028 CDS NC_010729.1 1133660 1135216 2 + 1557 Response regulator - none -
fig|6666666.148647.peg.1029 CDS NC_010729.1 1135228 1135644 1 + 417 TsaE protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA YjeE
fig|6666666.148647.peg.1030 CDS NC_010729.1 1135644 1135871 3 + 228 FIG00936027: hypothetical protein - none -
fig|6666666.148647.peg.1031 CDS NC_010729.1 1135999 1136613 1 + 615 Thymidine kinase (EC 2.7.1.21) pyrimidine conversions
fig|6666666.148647.peg.1032 CDS NC_010729.1 1136610 1137425 3 + 816 Acid phosphatase (EC 3.1.3.2) - none -
fig|6666666.148647.peg.1033 CDS NC_010729.1 1137464 1137799 2 + 336 Ribosome-binding factor A CBSS-138119.3.peg.2719;
NusA-TFII Cluster;
Translation initiation factors bacterial
fig|6666666.148647.peg.1034 CDS NC_010729.1 1137827 1139050 2 + 1224 Lipoprotein releasing system transmembrane protein LolC Lipoprotein sorting system
fig|6666666.148647.peg.1035 CDS NC_010729.1 1139163 1139933 3 + 771 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE Copper homeostasis: copper tolerance;
Lipoprotein Biosynthesis;
tRNA-methylthiotransferase containing cluster;
tRNA-methylthiotransferase containing cluster
fig|6666666.148647.peg.1036 CDS NC_010729.1 1139944 1141293 1 + 1350 Dihydroorotase (EC 3.5.2.3) De Novo Pyrimidine Synthesis
fig|6666666.148647.peg.1037 CDS NC_010729.1 1141460 1142215 2 + 756 hypothetical protein - none -
fig|6666666.148647.peg.1038 CDS NC_010729.1 1142181 1142576 3 + 396 GtrA family protein - none -
fig|6666666.148647.peg.1039 CDS NC_010729.1 1142735 1142863 2 + 129 hypothetical protein - none -
fig|6666666.148647.peg.1040 CDS NC_010729.1 1143632 1143165 -2 - 468 hypothetical protein - none -
fig|6666666.148647.peg.1041 CDS NC_010729.1 1143862 1144575 1 + 714 hypothetical protein - none -
fig|6666666.148647.peg.1042 CDS NC_010729.1 1144923 1146488 3 + 1566 O-antigen flippase Wzx KDO2-Lipid A biosynthesis
fig|6666666.148647.peg.1043 CDS NC_010729.1 1146527 1147186 2 + 660 FHA domain protein - none -
fig|6666666.148647.peg.1044 CDS NC_010729.1 1147241 1148542 2 + 1302 Putative inner membrane protein - none -
fig|6666666.148647.peg.1045 CDS NC_010729.1 1148559 1149050 3 + 492 G:T/U mismatch-specific uracil/thymine DNA-glycosylase DNA repair, bacterial;
Uracil-DNA glycosylase
fig|6666666.148647.peg.1046 CDS NC_010729.1 1149614 1149162 -2 - 453 lipoprotein, putative - none -
fig|6666666.148647.peg.1047 CDS NC_010729.1 1150734 1150459 -3 - 276 hypothetical protein - none -
fig|6666666.148647.peg.1048 CDS NC_010729.1 1150735 1151181 1 + 447 Pyruvoyl-dependent arginine decarboxylase 1 (EC 4.1.1.19) - none -
fig|6666666.148647.peg.1049 CDS NC_010729.1 1151266 1153533 1 + 2268 Alpha-1,2-mannosidase Mannose Metabolism
fig|6666666.148647.peg.1050 CDS NC_010729.1 1153713 1153961 3 + 249 FIG00936158: hypothetical protein - none -
fig|6666666.148647.peg.1051 CDS NC_010729.1 1153987 1155570 1 + 1584 Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.148647.peg.1052 CDS NC_010729.1 1155616 1156779 1 + 1164 Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.148647.peg.1053 CDS NC_010729.1 1156926 1157717 3 + 792 FIG00936064: hypothetical protein - none -
fig|6666666.148647.peg.1054 CDS NC_010729.1 1157714 1159408 2 + 1695 Alpha-amylase (EC 3.2.1.1) Maltose and Maltodextrin Utilization
fig|6666666.148647.peg.1055 CDS NC_010729.1 1163079 1159873 -3 - 3207 Beta-galactosidase (EC 3.2.1.23) Galactosylceramide and Sulfatide metabolism;
Lactose and Galactose Uptake and Utilization;
Lactose utilization
fig|6666666.148647.peg.1056 CDS NC_010729.1 1164289 1164981 1 + 693 DNA repair protein RadC Bacterial cell division cluster;
DNA repair, bacterial
fig|6666666.148647.peg.1057 CDS NC_010729.1 1165206 1166858 3 + 1653 Hydroxylamine reductase (EC 1.7.-.-) Nitrosative stress
fig|6666666.148647.peg.1058 CDS NC_010729.1 1167292 1167441 1 + 150 hypothetical protein - none -
fig|6666666.148647.peg.1059 CDS NC_010729.1 1167738 1167592 -3 - 147 hypothetical protein - none -
fig|6666666.148647.peg.1060 CDS NC_010729.1 1169701 1168010 -1 - 1692 Alkaline phosphatase (EC 3.1.3.1) Phosphate metabolism
fig|6666666.148647.peg.1061 CDS NC_010729.1 1170933 1169737 -3 - 1197 Xaa-Pro aminopeptidase (EC 3.4.11.9) Aminopeptidases (EC 3.4.11.-)
fig|6666666.148647.peg.1062 CDS NC_010729.1 1171117 1171311 1 + 195 hypothetical protein - none -
fig|6666666.148647.peg.1063 CDS NC_010729.1 1172196 1171432 -3 - 765 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) Folate Biosynthesis;
Folate biosynthesis cluster
fig|6666666.148647.peg.1064 CDS NC_010729.1 1173293 1172193 -2 - 1101 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I beta (EC 2.5.1.54) / Chorismate mutase I (EC 5.4.99.5) Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate);
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.148647.peg.1065 CDS NC_010729.1 1174559 1173309 -2 - 1251 FIG00936153: hypothetical protein - none -
fig|6666666.148647.peg.1066 CDS NC_010729.1 1175917 1174556 -1 - 1362 FIG00935947: hypothetical protein - none -
fig|6666666.148647.peg.1067 CDS NC_010729.1 1176879 1175914 -3 - 966 FIG00936209: hypothetical protein - none -
fig|6666666.148647.peg.1068 CDS NC_010729.1 1177975 1176953 -1 - 1023 RecA protein DNA repair, bacterial;
DNA repair, bacterial RecFOR pathway;
DNA repair system including RecA, MutS and a hypothetical protein;
RecA and RecX
fig|6666666.148647.peg.1069 CDS NC_010729.1 1178451 1177996 -3 - 456 Thiol peroxidase, Bcp-type (EC 1.11.1.15) Thioredoxin-disulfide reductase
fig|6666666.148647.peg.1070 CDS NC_010729.1 1178758 1179021 1 + 264 Mobile element protein - none -
fig|6666666.148647.peg.1071 CDS NC_010729.1 1179910 1179008 -1 - 903 Mobile element protein - none -
fig|6666666.148647.peg.1072 CDS NC_010729.1 1180417 1181307 1 + 891 GldB - none -
fig|6666666.148647.peg.1073 CDS NC_010729.1 1181471 1182895 2 + 1425 GTPase and tRNA-U34 5-formylation enzyme TrmE Cell Division Subsystem including YidCD;
RNA modification and chromosome partitioning cluster;
RNA modification cluster;
Universal GTPases;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.148647.peg.1074 CDS NC_010729.1 1183396 1183205 -1 - 192 Mobile element protein - none -
fig|6666666.148647.peg.1075 CDS NC_010729.1 1184512 1183610 -1 - 903 Mobile element protein - none -
fig|6666666.148647.peg.1076 CDS NC_010729.1 1185568 1184666 -1 - 903 Mobile element protein - none -
fig|6666666.148647.peg.1077 CDS NC_010729.1 1185976 1186878 1 + 903 Mobile element protein - none -
fig|6666666.148647.peg.1078 CDS NC_010729.1 1188018 1186924 -3 - 1095 hypothetical protein - none -
fig|6666666.148647.peg.1079 CDS NC_010729.1 1189525 1188515 -1 - 1011 Oxidoreductase - none -
fig|6666666.148647.peg.1080 CDS NC_010729.1 1190505 1189492 -3 - 1014 hypothetical protein - none -
fig|6666666.148647.peg.1081 CDS NC_010729.1 1191511 1190495 -1 - 1017 Radical SAM domain protein - none -
fig|6666666.148647.peg.1082 CDS NC_010729.1 1192352 1191492 -2 - 861 hypothetical protein - none -
fig|6666666.148647.peg.1083 CDS NC_010729.1 1193278 1192349 -1 - 930 hypothetical protein - none -
fig|6666666.148647.peg.1084 CDS NC_010729.1 1194434 1193286 -2 - 1149 aminotransferase (DegT family) - none -
fig|6666666.148647.peg.1085 CDS NC_010729.1 1195786 1194416 -1 - 1371 hypothetical protein - none -
fig|6666666.148647.peg.1086 CDS NC_010729.1 1196079 1196237 3 + 159 Mobile element protein - none -
fig|6666666.148647.peg.1087 CDS NC_010729.1 1199790 1196323 -3 - 3468 putative DNA methylase - none -
fig|6666666.148647.peg.1088 CDS NC_010729.1 1200900 1199815 -3 - 1086 Mobile element protein - none -
fig|6666666.148647.peg.1089 CDS NC_010729.1 1201181 1202278 2 + 1098 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) - none -
fig|6666666.148647.peg.1090 CDS NC_010729.1 1202271 1203344 3 + 1074 GDP-L-fucose synthetase (EC 1.1.1.271) - none -
fig|6666666.148647.peg.1091 CDS NC_010729.1 1203483 1204502 3 + 1020 Branched-chain amino acid aminotransferase (EC 2.6.1.42) Alanine biosynthesis;
Pyruvate Alanine Serine Interconversions
fig|6666666.148647.peg.1092 CDS NC_010729.1 1206352 1204631 -1 - 1722 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes - none -
fig|6666666.148647.peg.1093 CDS NC_010729.1 1207405 1209852 1 + 2448 Ferrous iron transport protein B - none -
fig|6666666.148647.peg.1094 CDS NC_010729.1 1209872 1210057 2 + 186 hypothetical protein - none -
fig|6666666.148647.peg.1095 CDS NC_010729.1 1210065 1210520 3 + 456 FIG00936104: hypothetical protein - none -
fig|6666666.148647.peg.1096 CDS NC_010729.1 1211098 1212897 1 + 1800 SSU ribosomal protein S1p Cell division-ribosomal stress proteins cluster;
Ribosome SSU bacterial
fig|6666666.148647.peg.1097 CDS NC_010729.1 1214288 1213749 -2 - 540 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) ## SSU rRNA m(2)G966 CBSS-226186.1.peg.3978;
CBSS-266117.6.peg.1260;
CBSS-269801.1.peg.1715;
RNA methylation
fig|6666666.148647.peg.1098 CDS NC_010729.1 1215140 1214325 -2 - 816 FIG032012: hypothetical protein CBSS-226186.1.peg.3978
fig|6666666.148647.peg.1099 CDS NC_010729.1 1215790 1215158 -1 - 633 FIG036016: hypothetical protein CBSS-226186.1.peg.3978
fig|6666666.148647.peg.1100 CDS NC_010729.1 1215922 1217337 1 + 1416 RecD-like DNA helicase Atu2026 - none -
fig|6666666.148647.peg.1101 CDS NC_010729.1 1218694 1217354 -1 - 1341 FIG00935697: hypothetical protein - none -
fig|6666666.148647.peg.1102 CDS NC_010729.1 1221758 1218891 -2 - 2868 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) Glycine and Serine Utilization;
Glycine cleavage system
fig|6666666.148647.peg.1103 CDS NC_010729.1 1222385 1221762 -2 - 624 Similar to Hydroxyacylglutathione hydrolase, but in an organism lacking glutathione biosynthesis Glutathione: Non-redox reactions
fig|6666666.148647.peg.1104 CDS NC_010729.1 1223077 1222403 -1 - 675 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB Cell Division Subsystem including YidCD;
RNA methylation;
RNA modification and chromosome partitioning cluster
fig|6666666.148647.peg.1105 CDS NC_010729.1 1223918 1223103 -2 - 816 FIG00936355: hypothetical protein - none -
fig|6666666.148647.peg.1106 CDS NC_010729.1 1224344 1225015 2 + 672 Queuosine Biosynthesis QueC ATPase Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.148647.peg.1107 CDS NC_010729.1 1225050 1225544 3 + 495 FIG00936260: hypothetical protein - none -
fig|6666666.148647.peg.1108 CDS NC_010729.1 1225555 1226685 1 + 1131 capA protein, putative - none -
fig|6666666.148647.peg.1109 CDS NC_010729.1 1226891 1226727 -2 - 165 hypothetical protein - none -
fig|6666666.148647.peg.1110 CDS NC_010729.1 1227843 1229513 3 + 1671 Probable dipeptidase (EC 3.4.-.-) - none -
fig|6666666.148647.peg.1111 CDS NC_010729.1 1230992 1229886 -2 - 1107 Chorismate synthase (EC 4.2.3.5) Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.148647.peg.1112 CDS NC_010729.1 1231690 1231142 -1 - 549 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase;
Potassium homeostasis
fig|6666666.148647.peg.1113 CDS NC_010729.1 1232103 1231765 -3 - 339 hypothetical protein - none -
fig|6666666.148647.peg.1114 CDS NC_010729.1 1232678 1232268 -2 - 411 FIG00935919: hypothetical protein - none -
fig|6666666.148647.peg.1115 CDS NC_010729.1 1233292 1232726 -1 - 567 RNA polymerase ECF-type sigma factor - none -
fig|6666666.148647.peg.1116 CDS NC_010729.1 1234001 1233888 -2 - 114 hypothetical protein - none -
fig|6666666.148647.peg.1117 CDS NC_010729.1 1234244 1234122 -2 - 123 hypothetical protein - none -
fig|6666666.148647.peg.1118 CDS NC_010729.1 1234332 1234967 3 + 636 Mobile element protein - none -
fig|6666666.148647.peg.1119 CDS NC_010729.1 1236851 1235184 -2 - 1668 Formate--tetrahydrofolate ligase (EC 6.3.4.3) 5-FCL-like protein;
One-carbon metabolism by tetrahydropterines
fig|6666666.148647.peg.1120 CDS NC_010729.1 1236864 1236995 3 + 132 hypothetical protein - none -
fig|6666666.148647.peg.1121 CDS NC_010729.1 1237008 1238342 3 + 1335 Predicted ATPase related to phosphate starvation-inducible protein PhoH Phosphate metabolism
fig|6666666.148647.peg.1122 CDS NC_010729.1 1238935 1238390 -1 - 546 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) RuvABC plus a hypothetical
fig|6666666.148647.peg.1123 CDS NC_010729.1 1239275 1238967 -2 - 309 FIG00935611: hypothetical protein - none -
fig|6666666.148647.peg.1124 CDS NC_010729.1 1239496 1240605 1 + 1110 hemagglutinin, putative - none -
fig|6666666.148647.peg.1125 CDS NC_010729.1 1240747 1240616 -1 - 132 hypothetical protein - none -
fig|6666666.148647.peg.1126 CDS NC_010729.1 1242044 1240734 -2 - 1311 Aspartate aminotransferase (EC 2.6.1.1) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.148647.peg.1127 CDS NC_010729.1 1244144 1242087 -2 - 2058 Acetyl-CoA synthetase (ADP-forming) alpha and beta chains, putative Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.148647.peg.1128 CDS NC_010729.1 1244914 1245999 1 + 1086 Mobile element protein - none -
fig|6666666.148647.peg.1129 CDS NC_010729.1 1246529 1246948 2 + 420 Large-conductance mechanosensitive channel Potassium homeostasis
fig|6666666.148647.peg.1130 CDS NC_010729.1 1247168 1247040 -2 - 129 hypothetical protein - none -
fig|6666666.148647.peg.1131 CDS NC_010729.1 1247326 1248483 1 + 1158 NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2) Phosphate metabolism
fig|6666666.148647.peg.1132 CDS NC_010729.1 1248593 1248907 2 + 315 NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2) Phosphate metabolism
fig|6666666.148647.peg.1133 CDS NC_010729.1 1248904 1251441 1 + 2538 NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) Phosphate metabolism
fig|6666666.148647.peg.1134 CDS NC_010729.1 1252786 1251587 -1 - 1200 FIG00935909: hypothetical protein - none -
fig|6666666.148647.peg.1135 CDS NC_010729.1 1253763 1252783 -3 - 981 Putative stomatin/prohibitin-family membrane protease subunit YbbK - none -
fig|6666666.148647.peg.1136 CDS NC_010729.1 1254254 1253790 -2 - 465 Putative activity regulator of membrane protease YbbK - none -
fig|6666666.148647.peg.1137 CDS NC_010729.1 1254781 1254951 1 + 171 FIG00936059: hypothetical protein - none -
fig|6666666.148647.peg.1138 CDS NC_010729.1 1255353 1255153 -3 - 201 hypothetical protein - none -
fig|6666666.148647.peg.1139 CDS NC_010729.1 1255362 1255688 3 + 327 Error-prone repair protein UmuD - none -
fig|6666666.148647.peg.1140 CDS NC_010729.1 1255696 1257057 1 + 1362 Error-prone, lesion bypass DNA polymerase V (UmuC) - none -
fig|6666666.148647.peg.1141 CDS NC_010729.1 1258616 1257066 -2 - 1551 L-lactate permease Lactate utilization
fig|6666666.148647.peg.1142 CDS NC_010729.1 1258932 1259402 3 + 471 FIG00935832: hypothetical protein - none -
fig|6666666.148647.peg.1143 CDS NC_010729.1 1259402 1260418 2 + 1017 UDP-N-acetylenolpyruvoylglucosamine reductase (EC 1.1.1.158) Peptidoglycan Biosynthesis;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.148647.peg.1144 CDS NC_010729.1 1260445 1261923 1 + 1479 Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase Lipoic acid metabolism;
Lipoic acid synthesis cluster
fig|6666666.148647.peg.1145 CDS NC_010729.1 1263337 1262252 -1 - 1086 Mobile element protein - none -
fig|6666666.148647.peg.1146 CDS NC_010729.1 1263559 1263359 -1 - 201 Conjugative transposon protein TraP @ DNA primase (EC 2.7.7.-) CBSS-349161.4.peg.2417;
Macromolecular synthesis operon
fig|6666666.148647.peg.1147 CDS NC_010729.1 1263752 1264873 2 + 1122 glycosyl transferase, group 1 family protein - none -
fig|6666666.148647.peg.1148 CDS NC_010729.1 1264870 1266141 1 + 1272 Glycosyl transferase, group 1 family protein - none -
fig|6666666.148647.peg.1149 CDS NC_010729.1 1266278 1266742 2 + 465 NADPH dependent preQ0 reductase (EC 1.7.1.13) - none -
fig|6666666.148647.peg.1150 CDS NC_010729.1 1266770 1267651 2 + 882 Transcription regulator [contains diacylglycerol kinase catalytic domain] - none -
fig|6666666.148647.peg.1151 CDS NC_010729.1 1268503 1268039 -1 - 465 FIG00935776: hypothetical protein - none -
fig|6666666.148647.peg.1152 CDS NC_010729.1 1268951 1268538 -2 - 414 hypothetical protein - none -
fig|6666666.148647.peg.1153 CDS NC_010729.1 1269634 1269002 -1 - 633 Orotate phosphoribosyltransferase (EC 2.4.2.10) De Novo Pyrimidine Synthesis
fig|6666666.148647.peg.1154 CDS NC_010729.1 1270566 1269745 -3 - 822 FIG003879: Predicted amidohydrolase CBSS-354.1.peg.2917
fig|6666666.148647.peg.1155 CDS NC_010729.1 1271024 1270563 -2 - 462 Acyltransferase family protein - none -
fig|6666666.148647.peg.1156 CDS NC_010729.1 1271029 1271157 1 + 129 hypothetical protein - none -
fig|6666666.148647.peg.1157 CDS NC_010729.1 1271563 1271162 -1 - 402 FIG00935521: hypothetical protein - none -
fig|6666666.148647.peg.1158 CDS NC_010729.1 1271957 1271814 -2 - 144 hypothetical protein - none -
fig|6666666.148647.peg.1159 CDS NC_010729.1 1272259 1272128 -1 - 132 hypothetical protein - none -
fig|6666666.148647.peg.1160 CDS NC_010729.1 1273134 1272454 -3 - 681 Ribosomal-protein-S5p-alanine acetyltransferase Ribosomal protein S5p acylation;
Ribosome biogenesis bacterial
fig|6666666.148647.peg.1161 CDS NC_010729.1 1274353 1273445 -1 - 909 FIG00936584: hypothetical protein - none -
fig|6666666.148647.peg.1162 CDS NC_010729.1 1275714 1274419 -3 - 1296 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) De Novo Purine Biosynthesis
fig|6666666.148647.peg.1163 CDS NC_010729.1 1277909 1275711 -2 - 2199 Dipeptidyl peptidase IV - none -
fig|6666666.148647.peg.1164 CDS NC_010729.1 1279371 1277941 -3 - 1431 Methyltransferase (EC 2.1.1.-) - none -
fig|6666666.148647.peg.1165 CDS NC_010729.1 1281171 1280014 -3 - 1158 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.267) CBSS-83331.1.peg.3039;
Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.148647.peg.1166 CDS NC_010729.1 1281695 1281168 -2 - 528 16S rRNA processing protein RimM Ribosome biogenesis bacterial
fig|6666666.148647.peg.1167 CDS NC_010729.1 1283006 1281702 -2 - 1305 UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7) Peptidoglycan Biosynthesis;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.148647.peg.1168 CDS NC_010729.1 1283621 1283037 -2 - 585 FIG00936255: hypothetical protein - none -
fig|6666666.148647.peg.1169 CDS NC_010729.1 1284996 1283659 -3 - 1338 Glucose-6-phosphate isomerase (EC 5.3.1.9) Glycolysis and Gluconeogenesis
fig|6666666.148647.peg.1170 CDS NC_010729.1 1286033 1285029 -2 - 1005 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) - none -
fig|6666666.148647.peg.1171 CDS NC_010729.1 1287855 1286119 -3 - 1737 Lysyl-tRNA synthetase (class II) (EC 6.1.1.6) tRNA aminoacylation, Lys
fig|6666666.148647.peg.1172 CDS NC_010729.1 1288856 1287978 -2 - 879 Purine nucleoside phosphorylase (EC 2.4.2.1) Adenosyl nucleosidases;
Deoxyribose and Deoxynucleoside Catabolism;
Purine conversions;
pyrimidine conversions
fig|6666666.148647.peg.1173 CDS NC_010729.1 1290345 1288927 -3 - 1419 FIG00935908: hypothetical protein - none -
fig|6666666.148647.peg.1174 CDS NC_010729.1 1290555 1291637 3 + 1083 Mobile element protein - none -
fig|6666666.148647.peg.1175 CDS NC_010729.1 1292840 1291755 -2 - 1086 Mobile element protein - none -
fig|6666666.148647.peg.1176 CDS NC_010729.1 1293589 1294233 1 + 645 Butyrate-acetoacetate CoA-transferase subunit A (EC 2.8.3.9) Acetyl-CoA fermentation to Butyrate;
Lysine fermentation;
Polyhydroxybutyrate metabolism;
Polyhydroxybutyrate metabolism
fig|6666666.148647.peg.1177 CDS NC_010729.1 1294368 1294676 3 + 309 3-aminobutyryl-CoA ammonia-lyase (EC 4.3.1.14) Lysine fermentation
fig|6666666.148647.peg.1178 CDS NC_010729.1 1294703 1295524 2 + 822 3-keto-5-aminohexanoate cleavage enzyme Lysine fermentation
fig|6666666.148647.peg.1179 CDS NC_010729.1 1295566 1296609 1 + 1044 3,5-diaminohexanoate dehydrogenase (EC 1.4.1.11) Lysine fermentation
fig|6666666.148647.peg.1180 CDS NC_010729.1 1296696 1297946 3 + 1251 Lysine 2,3-aminomutase (EC 5.4.3.2) Lysine degradation;
Lysine fermentation
fig|6666666.148647.peg.1181 CDS NC_010729.1 1297973 1299052 2 + 1080 hypothetical protein clustered with lysine fermentation genes - none -
fig|6666666.148647.peg.1182 CDS NC_010729.1 1299145 1300443 1 + 1299 MutS domain protein, family 2 DNA repair, bacterial MutL-MutS system
fig|6666666.148647.peg.1183 CDS NC_010729.1 1300471 1302042 1 + 1572 L-beta-lysine 5,6-aminomutase alpha subunit (EC 5.4.3.3) Lysine degradation;
Lysine fermentation
fig|6666666.148647.peg.1184 CDS NC_010729.1 1302039 1302830 3 + 792 L-beta-lysine 5,6-aminomutase beta subunit (EC 5.4.3.3) Lysine degradation;
Lysine fermentation
fig|6666666.148647.peg.1185 CDS NC_010729.1 1302853 1303515 1 + 663 Butyrate-acetoacetate CoA-transferase subunit B (EC 2.8.3.9) Acetyl-CoA fermentation to Butyrate;
Lysine fermentation;
Polyhydroxybutyrate metabolism
fig|6666666.148647.peg.1186 CDS NC_010729.1 1303603 1304700 1 + 1098 Butyryl-CoA dehydrogenase (EC 1.3.8.1) 5-FCL-like protein;
Acetyl-CoA fermentation to Butyrate;
Anaerobic respiratory reductases;
Lysine fermentation
fig|6666666.148647.peg.1187 CDS NC_010729.1 1304715 1305500 3 + 786 Electron transfer flavoprotein, beta subunit Acetyl-CoA fermentation to Butyrate;
Lysine fermentation
fig|6666666.148647.peg.1188 CDS NC_010729.1 1305514 1306521 1 + 1008 Electron transfer flavoprotein, alpha subunit Acetyl-CoA fermentation to Butyrate;
Lysine fermentation
fig|6666666.148647.peg.1189 CDS NC_010729.1 1306625 1307395 2 + 771 3-hydroxybutyryl-CoA dehydratase (EC 4.2.1.55) Acetyl-CoA fermentation to Butyrate;
Lysine fermentation;
Polyhydroxybutyrate metabolism
fig|6666666.148647.peg.1190 CDS NC_010729.1 1307442 1308287 3 + 846 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) Acetyl-CoA fermentation to Butyrate;
Acetyl-CoA fermentation to Butyrate;
Lysine fermentation;
Polyhydroxybutyrate metabolism;
Polyhydroxybutyrate metabolism
fig|6666666.148647.peg.1191 CDS NC_010729.1 1308536 1309621 2 + 1086 Mobile element protein - none -
fig|6666666.148647.peg.1192 CDS NC_010729.1 1310998 1309802 -1 - 1197 Acetate kinase (EC 2.7.2.1) Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.148647.peg.1193 CDS NC_010729.1 1312054 1311044 -1 - 1011 Phosphate acetyltransferase (EC 2.3.1.8) Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.148647.peg.1194 CDS NC_010729.1 1313111 1312263 -2 - 849 FIG00936374: hypothetical protein - none -
fig|6666666.148647.peg.1195 CDS NC_010729.1 1314355 1313252 -1 - 1104 thioredoxin family protein - none -
fig|6666666.148647.peg.1196 CDS NC_010729.1 1314623 1314871 2 + 249 hypothetical protein - none -
fig|6666666.148647.peg.1197 CDS NC_010729.1 1314990 1314868 -3 - 123 hypothetical protein - none -
fig|6666666.148647.peg.1198 CDS NC_010729.1 1315060 1315197 1 + 138 hypothetical protein - none -
fig|6666666.148647.peg.1199 CDS NC_010729.1 1315225 1316160 1 + 936 COG1242: Predicted Fe-S oxidoreductase - none -
fig|6666666.148647.peg.1200 CDS NC_010729.1 1316592 1316212 -3 - 381 acetyltransferase, GNAT family - none -
fig|6666666.148647.peg.1201 CDS NC_010729.1 1317629 1316892 -2 - 738 Transcriptional regulatory protein rprY - none -
fig|6666666.148647.peg.1202 CDS NC_010729.1 1318199 1318435 2 + 237 hypothetical protein - none -
fig|6666666.148647.peg.1203 CDS NC_010729.1 1318437 1319432 3 + 996 FIG146085: 3@1-to-5@1 oligoribonuclease A, Bacillus type CBSS-138119.3.peg.2719;
RNA processing and degradation, bacterial
fig|6666666.148647.peg.1204 CDS NC_010729.1 1319525 1320121 2 + 597 FIG00936234: hypothetical protein - none -
fig|6666666.148647.peg.1205 CDS NC_010729.1 1320175 1321563 1 + 1389 Phosphomannomutase (EC 5.4.2.8) / Phosphoglucosamine mutase (EC 5.4.2.10) Bacterial checkpoint-control-related cluster;
Mannose Metabolism;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.148647.peg.1206 CDS NC_010729.1 1321608 1323044 3 + 1437 RNA methyltransferase, TrmA family - none -
fig|6666666.148647.peg.1207 CDS NC_010729.1 1324569 1323484 -3 - 1086 Mobile element protein - none -
fig|6666666.148647.peg.1208 CDS NC_010729.1 1324680 1325165 3 + 486 DNA-binding protein, histone-like family - none -
fig|6666666.148647.peg.1209 CDS NC_010729.1 1325303 1326409 2 + 1107 FIG00936670: hypothetical protein - none -
fig|6666666.148647.peg.1210 CDS NC_010729.1 1326445 1328916 1 + 2472 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase (EC 6.3.2.10) / Alanine racemase (EC 5.1.1.1) Alanine biosynthesis;
Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo;
Pyruvate Alanine Serine Interconversions
fig|6666666.148647.peg.1211 CDS NC_010729.1 1330447 1329224 -1 - 1224 FIG00936368: hypothetical protein - none -
fig|6666666.148647.peg.1212 CDS NC_010729.1 1331609 1330785 -2 - 825 N-acetylmuramic acid 6-phosphate etherase - none -
fig|6666666.148647.peg.1213 CDS NC_010729.1 1332453 1331602 -3 - 852 FIG00935814: hypothetical protein - none -
fig|6666666.148647.peg.1214 CDS NC_010729.1 1333910 1332450 -2 - 1461 sodium/iodide co-transporter - none -
fig|6666666.148647.peg.1215 CDS NC_010729.1 1334281 1334739 1 + 459 DNA-binding protein, histone-like family - none -
fig|6666666.148647.peg.1216 CDS NC_010729.1 1334808 1336127 3 + 1320 ATPase, AAA family - none -
fig|6666666.148647.peg.1217 CDS NC_010729.1 1336153 1336920 1 + 768 tRNA (adenine37-N(6))-methyltransferase TrmN6 (EC 2.1.1.223) RNA methylation
fig|6666666.148647.peg.1218 CDS NC_010729.1 1338341 1336884 -2 - 1458 RNA polymerase sigma-54 factor RpoN Transcription initiation, bacterial sigma factors
fig|6666666.148647.peg.1219 CDS NC_010729.1 1339744 1338335 -1 - 1410 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase (EC 6.3.2.10) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo
fig|6666666.148647.peg.1220 CDS NC_010729.1 1339829 1340197 2 + 369 Aspartate 1-decarboxylase (EC 4.1.1.11) Coenzyme A Biosynthesis;
Coenzyme A Biosynthesis cluster;
Folate biosynthesis cluster
fig|6666666.148647.peg.1221 CDS NC_010729.1 1340274 1341611 3 + 1338 Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1) Bacterial signal recognition particle (SRP);
Universal GTPases
fig|6666666.148647.peg.1222 CDS NC_010729.1 1341732 1342622 3 + 891 Methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5) / Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9) 5-FCL-like protein;
One-carbon metabolism by tetrahydropterines;
One-carbon metabolism by tetrahydropterines
fig|6666666.148647.peg.1223 CDS NC_010729.1 1342915 1344261 1 + 1347 Multidrug and toxin extrusion (MATE) family efflux pump YdhE/NorM, homolog Multidrug Resistance Efflux Pumps
fig|6666666.148647.peg.1224 CDS NC_010729.1 1344753 1344878 3 + 126 hypothetical protein - none -
fig|6666666.148647.peg.1225 CDS NC_010729.1 1347494 1344903 -2 - 2592 ClpB protein Protein chaperones;
Proteolysis in bacteria, ATP-dependent
fig|6666666.148647.peg.1226 CDS NC_010729.1 1347713 1348273 2 + 561 flavodoxin, putative - none -
fig|6666666.148647.peg.1227 CDS NC_010729.1 1349104 1350174 1 + 1071 hypothetical protein - none -
fig|6666666.148647.peg.1228 CDS NC_010729.1 1350327 1351196 3 + 870 hypothetical protein - none -
fig|6666666.148647.peg.1229 CDS NC_010729.1 1351253 1351858 2 + 606 hypothetical protein - none -
fig|6666666.148647.peg.1230 CDS NC_010729.1 1351855 1355046 1 + 3192 putative ATP-binding protein - none -
fig|6666666.148647.peg.1231 CDS NC_010729.1 1355050 1355760 1 + 711 COG3209: Rhs family protein - none -
fig|6666666.148647.peg.1232 CDS NC_010729.1 1356166 1356297 1 + 132 hypothetical protein - none -
fig|6666666.148647.peg.1233 CDS NC_010729.1 1356488 1357573 2 + 1086 Mobile element protein - none -
fig|6666666.148647.peg.1234 CDS NC_010729.1 1357598 1357753 2 + 156 Calcium-transporting ATPase - none -
fig|6666666.148647.peg.1235 CDS NC_010729.1 1357856 1357737 -2 - 120 hypothetical protein - none -
fig|6666666.148647.peg.1236 CDS NC_010729.1 1359356 1357947 -2 - 1410 Asparaginyl-tRNA synthetase (EC 6.1.1.22) tRNA aminoacylation, Asp and Asn
fig|6666666.148647.peg.1237 CDS NC_010729.1 1360707 1359388 -3 - 1320 Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70) RNA pseudouridine syntheses
fig|6666666.148647.peg.1238 CDS NC_010729.1 1362151 1360808 -1 - 1344 Adenylosuccinate lyase (EC 4.3.2.2) De Novo Purine Biosynthesis;
Purine conversions
fig|6666666.148647.peg.1239 CDS NC_010729.1 1362798 1362286 -3 - 513 ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17) - none -
fig|6666666.148647.peg.1240 CDS NC_010729.1 1363522 1362872 -1 - 651 FIG00936419: hypothetical protein - none -
fig|6666666.148647.peg.1241 CDS NC_010729.1 1364734 1363547 -1 - 1188 Uracil permease De Novo Pyrimidine Synthesis
fig|6666666.148647.peg.1242 CDS NC_010729.1 1365074 1365541 2 + 468 Transcriptional regulator, AsnC family - none -
fig|6666666.148647.peg.1243 CDS NC_010729.1 1365594 1366976 3 + 1383 Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) DNA repair, bacterial;
Purine salvage cluster
fig|6666666.148647.peg.1244 CDS NC_010729.1 1367249 1369801 2 + 2553 Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) Ribonucleotide reduction
fig|6666666.148647.peg.1245 CDS NC_010729.1 1370001 1372175 3 + 2175 FIG00936306: hypothetical protein - none -
fig|6666666.148647.peg.1246 CDS NC_010729.1 1372417 1372274 -1 - 144 hypothetical protein - none -
fig|6666666.148647.peg.1247 CDS NC_010729.1 1372906 1372733 -1 - 174 hypothetical protein - none -
fig|6666666.148647.peg.1248 CDS NC_010729.1 1372931 1375561 2 + 2631 Valyl-tRNA synthetase (EC 6.1.1.9) tRNA aminoacylation, Val
fig|6666666.148647.peg.1249 CDS NC_010729.1 1375590 1376042 3 + 453 FIG00935954: hypothetical protein - none -
fig|6666666.148647.peg.1250 CDS NC_010729.1 1376369 1377310 2 + 942 Thioredoxin reductase (EC 1.8.1.9) Thioredoxin-disulfide reductase;
pyrimidine conversions
fig|6666666.148647.peg.1251 CDS NC_010729.1 1377864 1378493 3 + 630 bacterial sugar transferase - none -
fig|6666666.148647.peg.1252 CDS NC_010729.1 1380296 1378668 -2 - 1629 predicted protein - none -
fig|6666666.148647.peg.1253 CDS NC_010729.1 1381566 1380259 -3 - 1308 O-antigen flippase Wzx KDO2-Lipid A biosynthesis
fig|6666666.148647.peg.1254 CDS NC_010729.1 1382852 1381563 -2 - 1290 pigmentation and extracellular proteinase regulator - none -
fig|6666666.148647.peg.1255 CDS NC_010729.1 1384240 1383104 -1 - 1137 FIG00935582: hypothetical protein - none -
fig|6666666.148647.peg.1256 CDS NC_010729.1 1385220 1384351 -3 - 870 Dolichol-phosphate mannosyltransferase (EC 2.4.1.83) in lipid-linked oligosaccharide synthesis cluster - none -
fig|6666666.148647.peg.1257 CDS NC_010729.1 1386368 1385217 -2 - 1152 glycosyl transferase, group 1 family protein - none -
fig|6666666.148647.peg.1258 CDS NC_010729.1 1387790 1386747 -2 - 1044 capsular polysaccharide biosynthesis protein Rhamnose containing glycans
fig|6666666.148647.peg.1259 CDS NC_010729.1 1389140 1387806 -2 - 1335 UDP-glucose 6-dehydrogenase (EC 1.1.1.22) Lipid A-Ara4N pathway ( Polymyxin resistance )
fig|6666666.148647.peg.1260 CDS NC_010729.1 1389387 1389250 -3 - 138 hypothetical protein - none -
fig|6666666.148647.peg.1261 CDS NC_010729.1 1390377 1389418 -3 - 960 Peptide chain release factor 2; programmed frameshift-containing Programmed frameshift;
Programmed frameshift;
Translation termination factors bacterial
fig|6666666.148647.peg.1262 CDS NC_010729.1 1392483 1390657 -3 - 1827 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) Biotin biosynthesis;
Biotin synthesis cluster
fig|6666666.148647.peg.1263 CDS NC_010729.1 1396789 1392638 -1 - 4152 hypothetical protein - none -
fig|6666666.148647.peg.1264 CDS NC_010729.1 1397280 1397396 3 + 117 hypothetical protein - none -
fig|6666666.148647.peg.1265 CDS NC_010729.1 1397530 1397655 1 + 126 hypothetical protein - none -
fig|6666666.148647.peg.1266 CDS NC_010729.1 1397747 1397926 2 + 180 hypothetical protein - none -
fig|6666666.148647.peg.1267 CDS NC_010729.1 1398046 1399173 1 + 1128 putative glycosyltransferase - none -
fig|6666666.148647.peg.1268 CDS NC_010729.1 1399427 1400701 2 + 1275 Hypothetical oxidoreductase YqhD (EC 1.1.-.-) - none -
fig|6666666.148647.peg.1269 CDS NC_010729.1 1400840 1401256 2 + 417 hypothetical protein - none -
fig|6666666.148647.peg.1270 CDS NC_010729.1 1401417 1402022 3 + 606 FIG00939976: hypothetical protein - none -
fig|6666666.148647.peg.1271 CDS NC_010729.1 1402271 1403161 2 + 891 ADP-heptose:LPS heptosyltransferase - none -
fig|6666666.148647.peg.1272 CDS NC_010729.1 1403145 1403597 3 + 453 FIG00936131: hypothetical protein - none -
fig|6666666.148647.peg.1273 CDS NC_010729.1 1405414 1404353 -1 - 1062 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) Cobalamin synthesis;
Coenzyme B12 biosynthesis
fig|6666666.148647.peg.1274 CDS NC_010729.1 1406396 1405389 -2 - 1008 L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) Cobalamin synthesis;
Coenzyme B12 biosynthesis
fig|6666666.148647.peg.1275 CDS NC_010729.1 1407885 1406389 -3 - 1497 Cobyric acid synthase (EC 6.3.5.10) Cobalamin synthesis;
Coenzyme B12 biosynthesis
fig|6666666.148647.peg.1276 CDS NC_010729.1 1408448 1407882 -2 - 567 ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17) - none -
fig|6666666.148647.peg.1277 CDS NC_010729.1 1409790 1408471 -3 - 1320 Cobyrinic acid A,C-diamide synthase Cobalamin synthesis;
Coenzyme B12 biosynthesis
fig|6666666.148647.peg.1278 CDS NC_010729.1 1414254 1410847 -3 - 3408 FIG00935903: hypothetical protein - none -
fig|6666666.148647.peg.1279 CDS NC_010729.1 1414967 1414251 -2 - 717 FIG00935809: hypothetical protein - none -
fig|6666666.148647.peg.1280 CDS NC_010729.1 1415259 1415080 -3 - 180 FIG00935522: hypothetical protein - none -
fig|6666666.148647.peg.1281 CDS NC_010729.1 1415924 1415796 -2 - 129 hypothetical protein - none -
fig|6666666.148647.peg.1282 CDS NC_010729.1 1415983 1416828 1 + 846 Phosphoserine phosphatase (EC 3.1.3.3) Glycine and Serine Utilization;
Serine Biosynthesis;
Serine Biosynthesis
fig|6666666.148647.peg.1283 CDS NC_010729.1 1416980 1416783 -2 - 198 FIG00935936: hypothetical protein - none -
fig|6666666.148647.peg.1284 CDS NC_010729.1 1417068 1417889 3 + 822 Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE Lactate utilization
fig|6666666.148647.peg.1285 CDS NC_010729.1 1417886 1419253 2 + 1368 Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF Lactate utilization
fig|6666666.148647.peg.1286 CDS NC_010729.1 1419259 1419843 1 + 585 Predicted L-lactate dehydrogenase, hypothetical protein subunit SO1518 Lactate utilization
fig|6666666.148647.peg.1287 CDS NC_010729.1 1420427 1419954 -2 - 474 thioesterase family protein - none -
fig|6666666.148647.peg.1288 CDS NC_010729.1 1420667 1421815 2 + 1149 Diaminopimelate decarboxylase (EC 4.1.1.20) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.148647.peg.1289 CDS NC_010729.1 1421850 1422692 3 + 843 1,4-dihydroxy-2-naphthoate polyprenyltransferase (EC 2.5.1.74) - none -
fig|6666666.148647.peg.1290 CDS NC_010729.1 1422784 1423164 1 + 381 Transcriptional regulator, MecI family - none -
fig|6666666.148647.peg.1291 CDS NC_010729.1 1423199 1424515 2 + 1317 Ferric siderophore transport system, periplasmic binding protein TonB Hemin transport system;
Ton and Tol transport systems
fig|6666666.148647.peg.1292 CDS NC_010729.1 1426501 1425416 -1 - 1086 Mobile element protein - none -
fig|6666666.148647.peg.1293 CDS NC_010729.1 1426640 1426867 2 + 228 Mobile element protein - none -
fig|6666666.148647.peg.1294 CDS NC_010729.1 1427362 1428150 1 + 789 Mobile element protein - none -
fig|6666666.148647.peg.1295 CDS NC_010729.1 1428226 1428510 1 + 285 Mobile element protein - none -
fig|6666666.148647.peg.1296 CDS NC_010729.1 1428928 1428497 -1 - 432 Mobile element protein - none -
fig|6666666.148647.peg.1297 CDS NC_010729.1 1429048 1430160 1 + 1113 Conjugative transposon protein TraM Conjugative transposon, Bacteroidales
fig|6666666.148647.peg.1298 CDS NC_010729.1 1430199 1431119 3 + 921 Conjugative transposon protein TraN Conjugative transposon, Bacteroidales
fig|6666666.148647.peg.1299 CDS NC_010729.1 1431121 1431705 1 + 585 Conjugative transposon protein TraO Conjugative transposon, Bacteroidales
fig|6666666.148647.peg.1300 CDS NC_010729.1 1431705 1432559 3 + 855 Conjugative transposon primase TraP @ DNA primase (EC 2.7.7.-) CBSS-349161.4.peg.2417;
Conjugative transposon, Bacteroidales;
Macromolecular synthesis operon
fig|6666666.148647.peg.1301 CDS NC_010729.1 1432584 1433045 3 + 462 Conjugative transposon protein TraQ Conjugative transposon, Bacteroidales
fig|6666666.148647.peg.1302 CDS NC_010729.1 1433029 1433544 1 + 516 lysozyme-related protein - none -
fig|6666666.148647.peg.1303 CDS NC_010729.1 1435231 1434011 -1 - 1221 hypothetical protein - none -
fig|6666666.148647.peg.1304 CDS NC_010729.1 1435725 1435495 -3 - 231 FIG00935811: hypothetical protein - none -
fig|6666666.148647.peg.1305 CDS NC_010729.1 1435984 1435730 -1 - 255 FIG00935801: hypothetical protein - none -
fig|6666666.148647.peg.1306 CDS NC_010729.1 1437285 1436011 -3 - 1275 FIG00937820: hypothetical protein - none -
fig|6666666.148647.peg.1307 CDS NC_010729.1 1437832 1437302 -1 - 531 Antirestriction protein ArdA - none -
fig|6666666.148647.peg.1308 CDS NC_010729.1 1438270 1437854 -1 - 417 FIG00937340: hypothetical protein - none -
fig|6666666.148647.peg.1309 CDS NC_010729.1 1438501 1438283 -1 - 219 hypothetical protein - none -
fig|6666666.148647.peg.1310 CDS NC_010729.1 1438780 1438514 -1 - 267 FIG00936644: hypothetical protein - none -
fig|6666666.148647.peg.1311 CDS NC_010729.1 1441498 1439480 -1 - 2019 Outer membrane lipoprotein omp16 precursor Ton and Tol transport systems
fig|6666666.148647.peg.1312 CDS NC_010729.1 1442113 1441520 -1 - 594 Queuosine Biosynthesis QueE Radical SAM Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.148647.peg.1313 CDS NC_010729.1 1442552 1442133 -2 - 420 Queuosine biosynthesis QueD, PTPS-I Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.148647.peg.1314 CDS NC_010729.1 1442741 1442607 -2 - 135 hypothetical protein - none -
fig|6666666.148647.peg.1315 CDS NC_010729.1 1443455 1442769 -2 - 687 Hcp transcriptional regulator HcpR (Crp/Fnr family) Nitrosative stress
fig|6666666.148647.peg.1316 CDS NC_010729.1 1443774 1443472 -3 - 303 transcriptional regulator, putative - none -
fig|6666666.148647.peg.1317 CDS NC_010729.1 1445260 1443893 -1 - 1368 FIG00935626: hypothetical protein - none -
fig|6666666.148647.peg.1318 CDS NC_010729.1 1446207 1445350 -3 - 858 FIG00936664: hypothetical protein - none -
fig|6666666.148647.peg.1319 CDS NC_010729.1 1447131 1446253 -3 - 879 Mce4/Rv3499c/MTV023.06c protein - none -
fig|6666666.148647.peg.1320 CDS NC_010729.1 1448260 1447172 -1 - 1089 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) Murein Hydrolases;
Recycling of Peptidoglycan Amino Acids
fig|6666666.148647.peg.1321 CDS NC_010729.1 1449706 1450638 1 + 933 iron dependent repressor, putative - none -
fig|6666666.148647.peg.1322 CDS NC_010729.1 1450672 1452849 1 + 2178 Ferrous iron transport protein B - none -
fig|6666666.148647.peg.1323 CDS NC_010729.1 1452886 1454532 1 + 1647 Glycogen - none -
fig|6666666.148647.peg.1324 CDS NC_010729.1 1454601 1455554 3 + 954 K+-dependent Na+/Ca+ exchanger related-protein - none -
fig|6666666.148647.peg.1325 CDS NC_010729.1 1455575 1456039 2 + 465 Arginine pathway regulatory protein ArgR, repressor of arg regulon Arginine and Ornithine Degradation
fig|6666666.148647.peg.1326 CDS NC_010729.1 1456472 1458199 2 + 1728 hypothetical protein - none -
fig|6666666.148647.peg.1327 CDS NC_010729.1 1460730 1458433 -3 - 2298 ATP-dependent DNA helicase UvrD/PcrA DNA repair, bacterial UvrD and related helicases
fig|6666666.148647.peg.1328 CDS NC_010729.1 1462109 1460730 -2 - 1380 FIG00935576: hypothetical protein - none -
fig|6666666.148647.peg.1329 CDS NC_010729.1 1465038 1462135 -3 - 2904 Excinuclease ABC subunit A DNA repair, UvrABC system
fig|6666666.148647.peg.1330 CDS NC_010729.1 1466482 1465109 -1 - 1374 FIG00935900: hypothetical protein - none -
fig|6666666.148647.peg.1331 CDS NC_010729.1 1467311 1466577 -2 - 735 ABC transporter, ATP-binding protein - none -
fig|6666666.148647.peg.1332 CDS NC_010729.1 1467551 1468636 2 + 1086 Mobile element protein - none -
fig|6666666.148647.peg.1333 CDS NC_010729.1 1469419 1468766 -1 - 654 ABC-type transport system involved in resistance to organic solvents, permease component - none -
fig|6666666.148647.peg.1334 CDS NC_010729.1 1470997 1469657 -1 - 1341 hypothetical protein - none -
fig|6666666.148647.peg.1335 CDS NC_010729.1 1471316 1471140 -2 - 177 hypothetical protein - none -
fig|6666666.148647.peg.1336 CDS NC_010729.1 1473077 1471380 -2 - 1698 Immunoreactive 53 kDa antigen PG123 - none -
fig|6666666.148647.peg.1337 CDS NC_010729.1 1474157 1473255 -2 - 903 Nucleoside ABC transporter, permease protein 1 - none -
fig|6666666.148647.peg.1338 CDS NC_010729.1 1474897 1474157 -1 - 741 Nucleoside ABC transporter, permease protein 1 - none -
fig|6666666.148647.peg.1339 CDS NC_010729.1 1476325 1475108 -1 - 1218 hypothetical protein - none -
fig|6666666.148647.peg.1340 CDS NC_010729.1 1477345 1476335 -1 - 1011 Alanyl-tRNA synthetase (EC 6.1.1.7) Cluster containing Alanyl-tRNA synthetase;
tRNA aminoacylation, Ala
fig|6666666.148647.peg.1341 CDS NC_010729.1 1478463 1477342 -3 - 1122 High-affinity leucine-specific transport system, periplasmic binding protein LivK (TC 3.A.1.4.1) - none -
fig|6666666.148647.peg.1342 CDS NC_010729.1 1479167 1478460 -2 - 708 Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1) - none -
fig|6666666.148647.peg.1343 CDS NC_010729.1 1479901 1479164 -1 - 738 branched-chain amino acid ABC transporter, ATP-binding protein - none -
fig|6666666.148647.peg.1344 CDS NC_010729.1 1480313 1480474 2 + 162 hypothetical protein - none -
fig|6666666.148647.peg.1345 CDS NC_010729.1 1480471 1481484 1 + 1014 Para-aminobenzoate synthase, aminase component (EC 2.6.1.85) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Folate Biosynthesis
fig|6666666.148647.peg.1346 CDS NC_010729.1 1481491 1482090 1 + 600 Aminodeoxychorismate lyase (EC 4.1.3.38) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Folate Biosynthesis
fig|6666666.148647.peg.1347 CDS NC_010729.1 1483778 1482135 -2 - 1644 FIG00935530: hypothetical protein - none -
fig|6666666.148647.peg.1348 CDS NC_010729.1 1486585 1483775 -1 - 2811 putative outer membrane receptor - none -
fig|6666666.148647.peg.1349 CDS NC_010729.1 1487950 1486757 -1 - 1194 FIG00936332: hypothetical protein - none -
fig|6666666.148647.peg.1350 CDS NC_010729.1 1488259 1487951 -1 - 309 hypothetical protein - none -
fig|6666666.148647.peg.1351 CDS NC_010729.1 1491015 1488289 -3 - 2727 Pyruvate,phosphate dikinase (EC 2.7.9.1) Glycolysis and Gluconeogenesis;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.148647.peg.1352 CDS NC_010729.1 1491183 1491326 3 + 144 hypothetical protein - none -
fig|6666666.148647.peg.1353 CDS NC_010729.1 1494294 1491379 -3 - 2916 TPR domain protein - none -
fig|6666666.148647.peg.1354 CDS NC_010729.1 1494400 1494537 1 + 138 hypothetical protein - none -
fig|6666666.148647.peg.1355 CDS NC_010729.1 1496370 1494874 -3 - 1497 acetyl-CoA hydrolase/transferase family protein - none -
fig|6666666.148647.peg.1356 CDS NC_010729.1 1496674 1498071 1 + 1398 tRNA-i(6)A37 methylthiotransferase Methylthiotransferases;
tRNA-methylthiotransferase containing cluster;
tRNA modification Bacteria;
tRNA processing
fig|6666666.148647.peg.1357 CDS NC_010729.1 1498978 1499805 1 + 828 ABC transporter, ATP-binding protein - none -
fig|6666666.148647.peg.1358 CDS NC_010729.1 1499819 1500673 2 + 855 FIG00936394: hypothetical protein - none -
fig|6666666.148647.peg.1359 CDS NC_010729.1 1500670 1501428 1 + 759 FIG00936228: hypothetical protein - none -
fig|6666666.148647.peg.1360 CDS NC_010729.1 1501425 1501796 3 + 372 Transcriptional regulator, GntR family - none -
fig|6666666.148647.peg.1361 CDS NC_010729.1 1502016 1504520 3 + 2505 putative TonB-dependent receptor - none -
fig|6666666.148647.peg.1362 CDS NC_010729.1 1504551 1505291 3 + 741 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) ABC transporter alkylphosphonate (TC 3.A.1.9.1)
fig|6666666.148647.peg.1363 CDS NC_010729.1 1505692 1507926 1 + 2235 prolyl oligopeptidase family protein - none -
fig|6666666.148647.peg.1364 CDS NC_010729.1 1508663 1508085 -2 - 579 Bll2647 protein - none -
fig|6666666.148647.peg.1365 CDS NC_010729.1 1508640 1508894 3 + 255 hypothetical protein - none -
fig|6666666.148647.peg.1366 CDS NC_010729.1 1509286 1509152 -1 - 135 hypothetical protein - none -
fig|6666666.148647.peg.1367 CDS NC_010729.1 1509515 1509393 -2 - 123 hypothetical protein - none -
fig|6666666.148647.peg.1368 CDS NC_010729.1 1510106 1509570 -2 - 537 hypothetical protein - none -
fig|6666666.148647.peg.1369 CDS NC_010729.1 1510502 1510110 -2 - 393 hypothetical protein - none -
fig|6666666.148647.peg.1370 CDS NC_010729.1 1510700 1510578 -2 - 123 Mobile element protein - none -
fig|6666666.148647.peg.1371 CDS NC_010729.1 1510822 1511634 1 + 813 lipoprotein protein, putative - none -
fig|6666666.148647.peg.1372 CDS NC_010729.1 1511776 1512108 1 + 333 FIG00936941: hypothetical protein - none -
fig|6666666.148647.peg.1373 CDS NC_010729.1 1512138 1512596 3 + 459 FIG00897728: hypothetical protein - none -
fig|6666666.148647.peg.1374 CDS NC_010729.1 1512872 1513183 2 + 312 hypothetical protein - none -
fig|6666666.148647.peg.1375 CDS NC_010729.1 1513187 1514320 2 + 1134 Erythronate-4-phosphate dehydrogenase (EC 1.1.1.290) Pyridoxin (Vitamin B6) Biosynthesis
fig|6666666.148647.peg.1376 CDS NC_010729.1 1514330 1515055 2 + 726 Oxidoreductase, short chain dehydrogenase/reductase family - none -
fig|6666666.148647.peg.1377 CDS NC_010729.1 1515375 1515226 -3 - 150 hypothetical protein - none -
fig|6666666.148647.peg.1378 CDS NC_010729.1 1515849 1515730 -3 - 120 hypothetical protein - none -
fig|6666666.148647.peg.1379 CDS NC_010729.1 1515974 1517539 2 + 1566 transglycosylase - none -
fig|6666666.148647.peg.1380 CDS NC_010729.1 1517564 1519435 2 + 1872 COG0488: ATPase components of ABC transporters with duplicated ATPase domains - none -
fig|6666666.148647.peg.1381 CDS NC_010729.1 1519482 1520147 3 + 666 Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) Queuosine-Archaeosine Biosynthesis
fig|6666666.148647.peg.1382 CDS NC_010729.1 1520296 1520144 -1 - 153 hypothetical protein - none -
fig|6666666.148647.peg.1383 CDS NC_010729.1 1520457 1520290 -3 - 168 FIG00936565: hypothetical protein - none -
fig|6666666.148647.peg.1384 CDS NC_010729.1 1522853 1520745 -2 - 2109 hypothetical protein - none -
fig|6666666.148647.peg.1385 CDS NC_010729.1 1523065 1522946 -1 - 120 hypothetical protein - none -
fig|6666666.148647.peg.1386 CDS NC_010729.1 1524474 1523059 -3 - 1416 NAD-specific glutamate dehydrogenase (EC 1.4.1.2) Glutamate dehydrogenases;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.148647.peg.1387 CDS NC_010729.1 1524635 1524763 2 + 129 hypothetical protein - none -
fig|6666666.148647.peg.1388 CDS NC_010729.1 1524947 1525075 2 + 129 hypothetical protein - none -
fig|6666666.148647.peg.1389 CDS NC_010729.1 1526041 1525085 -1 - 957 L-threonine 3-dehydrogenase (EC 1.1.1.103) Glycine Biosynthesis;
Threonine degradation
fig|6666666.148647.peg.1390 CDS NC_010729.1 1526031 1526189 3 + 159 hypothetical protein - none -
fig|6666666.148647.peg.1391 CDS NC_010729.1 1526411 1527067 2 + 657 FIG00936194: hypothetical protein - none -
fig|6666666.148647.peg.1392 CDS NC_010729.1 1527064 1527663 1 + 600 transcriptional regulator, LuxR family - none -
fig|6666666.148647.peg.1393 CDS NC_010729.1 1528364 1527681 -2 - 684 Similar to tRNA pseudouridine synthase C, group TruC1 RNA pseudouridine syntheses;
Ribosome biogenesis bacterial
fig|6666666.148647.peg.1394 CDS NC_010729.1 1529154 1528408 -3 - 747 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) Fatty Acid Biosynthesis FASII
fig|6666666.148647.peg.1395 CDS NC_010729.1 1529846 1529238 -2 - 609 Transcriptional regulator, TetR family - none -
fig|6666666.148647.peg.1396 CDS NC_010729.1 1530449 1532236 2 + 1788 Translation elongation factor LepA Heat shock dnaK gene cluster extended;
Translation elongation factors bacterial;
Universal GTPases
fig|6666666.148647.peg.1397 CDS NC_010729.1 1532271 1533857 3 + 1587 Replicative DNA helicase (EC 3.6.1.-) - none -
fig|6666666.148647.peg.1398 CDS NC_010729.1 1535303 1537933 2 + 2631 Alanyl-tRNA synthetase (EC 6.1.1.7) Cluster containing Alanyl-tRNA synthetase;
tRNA aminoacylation, Ala
fig|6666666.148647.peg.1399 CDS NC_010729.1 1537948 1539009 1 + 1062 3-dehydroquinate synthase (EC 4.2.3.4) Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.148647.peg.1400 CDS NC_010729.1 1539985 1539254 -1 - 732 probable DNA alkylation repair enzyme - none -
fig|6666666.148647.peg.1401 CDS NC_010729.1 1540488 1540000 -3 - 489 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) - none -
fig|6666666.148647.peg.1402 CDS NC_010729.1 1541311 1540637 -1 - 675 FIG00936236: hypothetical protein - none -
fig|6666666.148647.peg.1403 CDS NC_010729.1 1541402 1541569 2 + 168 Mobile element protein - none -
fig|6666666.148647.peg.1404 CDS NC_010729.1 1543073 1541838 -2 - 1236 FIG00935867: hypothetical protein - none -
fig|6666666.148647.peg.1405 CDS NC_010729.1 1545095 1543086 -2 - 2010 DNA ligase (EC 6.5.1.2) DNA Repair Base Excision
fig|6666666.148647.peg.1406 CDS NC_010729.1 1545610 1545083 -1 - 528 acetyltransferase, GNAT family - none -
fig|6666666.148647.peg.1407 CDS NC_010729.1 1546240 1545617 -1 - 624 Recombination protein RecR DNA processing cluster;
DNA repair, bacterial RecFOR pathway
fig|6666666.148647.peg.1408 CDS NC_010729.1 1547751 1546237 -3 - 1515 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) Bacterial Cell Division;
CBSS-354.1.peg.2917;
RNA processing and degradation, bacterial
fig|6666666.148647.peg.1409 CDS NC_010729.1 1548266 1548072 -2 - 195 Integration host factor alpha/beta DNA structural proteins, bacterial
fig|6666666.148647.peg.1410 CDS NC_010729.1 1549562 1548462 -2 - 1101 Mobile element protein - none -
fig|6666666.148647.peg.1411 CDS NC_010729.1 1550070 1549744 -3 - 327 Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) Ribonucleotide reduction
fig|6666666.148647.peg.1412 CDS NC_010729.1 1552664 1550268 -2 - 2397 Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) Ribonucleotide reduction
fig|6666666.148647.peg.1413 CDS NC_010729.1 1553593 1554678 1 + 1086 Mobile element protein - none -
fig|6666666.148647.peg.1414 CDS NC_010729.1 1558741 1558613 -1 - 129 hypothetical protein - none -
fig|6666666.148647.peg.1415 CDS NC_010729.1 1560416 1560529 2 + 114 hypothetical protein - none -
fig|6666666.148647.peg.1416 CDS NC_010729.1 1560646 1560783 1 + 138 hypothetical protein - none -
fig|6666666.148647.peg.1417 CDS NC_010729.1 1562798 1561167 -2 - 1632 Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.2.1.88) Arginine and Ornithine Degradation;
Proline, 4-hydroxyproline uptake and utilization
fig|6666666.148647.peg.1418 CDS NC_010729.1 1563804 1562875 -3 - 930 FIG00936429: hypothetical protein - none -
fig|6666666.148647.peg.1419 CDS NC_010729.1 1565040 1563811 -3 - 1230 Ornithine aminotransferase (EC 2.6.1.13) Arginine and Ornithine Degradation;
Dimethylarginine metabolism
fig|6666666.148647.peg.1420 CDS NC_010729.1 1565434 1565279 -1 - 156 FIG00936161: hypothetical protein - none -
fig|6666666.148647.peg.1421 CDS NC_010729.1 1565490 1566056 3 + 567 Translation elongation factor P Translation elongation factors bacterial
fig|6666666.148647.peg.1422 CDS NC_010729.1 1566354 1566569 3 + 216 hypothetical protein - none -
fig|6666666.148647.peg.1423 CDS NC_010729.1 1566592 1567098 1 + 507 DNA-binding protein, histone-like family - none -
fig|6666666.148647.peg.1424 CDS NC_010729.1 1568916 1567240 -3 - 1677 putative membrane protein - none -
fig|6666666.148647.peg.1425 CDS NC_010729.1 1569133 1570488 1 + 1356 Catalyzes the cleavage of p-aminobenzoyl-glutamate to p-aminobenzoate and glutamate, subunit A - none -
fig|6666666.148647.peg.1426 CDS NC_010729.1 1570563 1571837 3 + 1275 S-adenosylhomocysteine deaminase (EC 3.5.4.28); Methylthioadenosine deaminase - none -
fig|6666666.148647.peg.1427 CDS NC_010729.1 1571857 1572678 1 + 822 Purine nucleoside phosphorylase (EC 2.4.2.1) Adenosyl nucleosidases;
Deoxyribose and Deoxynucleoside Catabolism;
Purine conversions;
pyrimidine conversions
fig|6666666.148647.peg.1428 CDS NC_010729.1 1573755 1573210 -3 - 546 FIG00935768: hypothetical protein - none -
fig|6666666.148647.peg.1429 CDS NC_010729.1 1574605 1575123 1 + 519 DNA-binding protein, histone-like family - none -
fig|6666666.148647.peg.1430 CDS NC_010729.1 1575601 1578471 1 + 2871 Lysyl endopeptidase (EC 3.4.21.50) Serine endopeptidase (EC 3.4.21.-)
fig|6666666.148647.peg.1431 CDS NC_010729.1 1583284 1579766 -1 - 3519 Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-) Methionine Degradation;
Pyruvate:ferredoxin oxidoreductase
fig|6666666.148647.peg.1432 CDS NC_010729.1 1584717 1583536 -3 - 1182 ATPase component BioM of energizing module of biotin ECF transporter Biotin biosynthesis;
Biotin synthesis cluster
fig|6666666.148647.peg.1433 CDS NC_010729.1 1585174 1586259 1 + 1086 Mobile element protein - none -
fig|6666666.148647.peg.1434 CDS NC_010729.1 1586915 1587172 2 + 258 DNA-binding protein, histone-like family - none -
fig|6666666.148647.peg.1435 CDS NC_010729.1 1587188 1587358 2 + 171 DNA-binding protein, histone-like family - none -
fig|6666666.148647.peg.1436 CDS NC_010729.1 1587436 1587753 1 + 318 Type II restriction enzyme EcoRI - none -
fig|6666666.148647.peg.1437 CDS NC_010729.1 1587756 1588271 3 + 516 Type II restriction enzyme EcoRI - none -
fig|6666666.148647.peg.1438 CDS NC_010729.1 1588315 1589259 1 + 945 Modification methylase EcoRI (EC 2.1.1.72) - none -
fig|6666666.148647.peg.1439 CDS NC_010729.1 1589560 1589691 1 + 132 hypothetical protein - none -
fig|6666666.148647.peg.1440 CDS NC_010729.1 1590842 1589940 -2 - 903 Mobile element protein - none -
fig|6666666.148647.peg.1441 CDS NC_010729.1 1591359 1591072 -3 - 288 FIG00936253: hypothetical protein - none -
fig|6666666.148647.peg.1442 CDS NC_010729.1 1594505 1591356 -2 - 3150 Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA Cobalt-zinc-cadmium resistance;
Cobalt-zinc-cadmium resistance
fig|6666666.148647.peg.1443 CDS NC_010729.1 1595563 1594502 -1 - 1062 Probable Co/Zn/Cd efflux system membrane fusion protein Cobalt-zinc-cadmium resistance
fig|6666666.148647.peg.1444 CDS NC_010729.1 1596912 1595599 -3 - 1314 Outer membrane efflux protein precursor - none -
fig|6666666.148647.peg.1445 CDS NC_010729.1 1598840 1597755 -2 - 1086 Mobile element protein - none -
fig|6666666.148647.peg.1446 CDS NC_010729.1 1600666 1599206 -1 - 1461 Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3) Dipeptidases (EC 3.4.13.-);
Recycling of Peptidoglycan Amino Acids
fig|6666666.148647.peg.1447 CDS NC_010729.1 1600747 1600962 1 + 216 hypothetical protein - none -
fig|6666666.148647.peg.1448 CDS NC_010729.1 1600995 1601615 3 + 621 FIG00936056: hypothetical protein - none -
fig|6666666.148647.peg.1449 CDS NC_010729.1 1604279 1601796 -2 - 2484 putative ferric aerobactin receptor - none -
fig|6666666.148647.peg.1450 CDS NC_010729.1 1604425 1604622 1 + 198 hypothetical protein - none -
fig|6666666.148647.peg.1451 CDS NC_010729.1 1605477 1606325 3 + 849 Vancomycin B-type resistance protein VanW Resistance to Vancomycin
fig|6666666.148647.peg.1452 CDS NC_010729.1 1606450 1608378 1 + 1929 NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase NAD and NADP cofactor biosynthesis global;
NAD and NADP cofactor biosynthesis global
fig|6666666.148647.peg.1453 CDS NC_010729.1 1608491 1609576 2 + 1086 Mobile element protein - none -
fig|6666666.148647.peg.1454 CDS NC_010729.1 1613143 1609916 -1 - 3228 Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) De Novo Pyrimidine Synthesis;
Macromolecular synthesis operon
fig|6666666.148647.peg.1455 CDS NC_010729.1 1614211 1613162 -1 - 1050 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) De Novo Pyrimidine Synthesis;
Macromolecular synthesis operon
fig|6666666.148647.peg.1456 CDS NC_010729.1 1616152 1614269 -1 - 1884 Amidophosphoribosyltransferase (EC 2.4.2.14) De Novo Purine Biosynthesis
fig|6666666.148647.peg.1457 CDS NC_010729.1 1618125 1616242 -3 - 1884 Inner membrane protein translocase component YidC, long form CTP synthase (EC 6.3.4.2) cluster;
Cell Division Subsystem including YidCD;
RNA modification cluster
fig|6666666.148647.peg.1458 CDS NC_010729.1 1619872 1618253 -1 - 1620 CTP synthase (EC 6.3.4.2) CTP synthase (EC 6.3.4.2) cluster;
pyrimidine conversions
fig|6666666.148647.peg.1459 CDS NC_010729.1 1620527 1622023 2 + 1497 Inosine-5@1-monophosphate dehydrogenase (EC 1.1.1.205) Purine conversions;
Purine salvage cluster
fig|6666666.148647.peg.1460 CDS NC_010729.1 1622134 1622928 1 + 795 tRNA dimethylallyltransferase (EC 2.5.1.75) tRNA modification Bacteria;
tRNA processing
fig|6666666.148647.peg.1461 CDS NC_010729.1 1623145 1623414 1 + 270 Heat shock protein 60 family co-chaperone GroES GroEL GroES
fig|6666666.148647.peg.1462 CDS NC_010729.1 1623453 1625090 3 + 1638 Heat shock protein 60 family chaperone GroEL GroEL GroES
fig|6666666.148647.peg.1463 CDS NC_010729.1 1625770 1626495 1 + 726 metal-dependent membrane protease - none -
fig|6666666.148647.peg.1464 CDS NC_010729.1 1626471 1629494 3 + 3024 FIG00936431: hypothetical protein - none -
fig|6666666.148647.peg.1465 CDS NC_010729.1 1629525 1630772 3 + 1248 FIG00935721: hypothetical protein - none -
fig|6666666.148647.peg.1466 CDS NC_010729.1 1630769 1632346 2 + 1578 Alkaline phosphatase (EC 3.1.3.1) Phosphate metabolism
fig|6666666.148647.peg.1467 CDS NC_010729.1 1632458 1635781 2 + 3324 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) - none -
fig|6666666.148647.peg.1468 CDS NC_010729.1 1635873 1636763 3 + 891 Protein YicC CBSS-323097.3.peg.2594
fig|6666666.148647.peg.1469 CDS NC_010729.1 1636796 1637362 2 + 567 Guanylate kinase (EC 2.7.4.8) CBSS-323097.3.peg.2594;
Purine conversions
fig|6666666.148647.peg.1470 CDS NC_010729.1 1637382 1638614 3 + 1233 Spore maturation protein A-like protein Spore Core Dehydration
fig|6666666.148647.peg.1471 CDS NC_010729.1 1638650 1639105 2 + 456 Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly CBSS-56780.10.peg.1536;
Glycyl-tRNA synthetase containing cluster;
tRNA-methylthiotransferase containing cluster
fig|6666666.148647.peg.1472 CDS NC_010729.1 1639122 1639982 3 + 861 FIG00935598: hypothetical protein - none -
fig|6666666.148647.peg.1473 CDS NC_010729.1 1639972 1640574 1 + 603 Phosphoserine phosphatase (EC 3.1.3.3) Glycine and Serine Utilization;
Serine Biosynthesis;
Serine Biosynthesis
fig|6666666.148647.peg.1474 CDS NC_010729.1 1643236 1641155 -1 - 2082 hemagglutinin, putative - none -
fig|6666666.148647.peg.1475 CDS NC_010729.1 1643264 1643392 2 + 129 hypothetical protein - none -
fig|6666666.148647.peg.1476 CDS NC_010729.1 1644184 1643618 -1 - 567 Lipoate synthase Lipoic acid metabolism;
Lipoic acid synthesis cluster
fig|6666666.148647.peg.1477 CDS NC_010729.1 1644170 1644517 2 + 348 hypothetical protein - none -
fig|6666666.148647.peg.1478 CDS NC_010729.1 1646698 1644569 -1 - 2130 Dipeptidyl peptidase IV - none -
fig|6666666.148647.peg.1479 CDS NC_010729.1 1647241 1646780 -1 - 462 tmRNA-binding protein SmpB Heat shock dnaK gene cluster extended;
Translation termination factors bacterial
fig|6666666.148647.peg.1480 CDS NC_010729.1 1648365 1647274 -3 - 1092 membrane protein, putative - none -
fig|6666666.148647.peg.1481 CDS NC_010729.1 1649502 1648372 -3 - 1131 tRNA-guanine transglycosylase (EC 2.4.2.29) CBSS-211586.1.peg.2832;
Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.148647.peg.1482 CDS NC_010729.1 1649879 1649760 -2 - 120 Mobile element protein - none -
fig|6666666.148647.peg.1483 CDS NC_010729.1 1650804 1650319 -3 - 486 S-ribosylhomocysteine lyase (EC 4.4.1.21) / Autoinducer-2 production protein LuxS Methionine Degradation
fig|6666666.148647.peg.1484 CDS NC_010729.1 1651509 1650823 -3 - 687 5@1-methylthioadenosine nucleosidase (EC 3.2.2.16) / S-adenosylhomocysteine nucleosidase (EC 3.2.2.9) Adenosyl nucleosidases;
Adenosyl nucleosidases;
Methionine Degradation;
Polyamine Metabolism
fig|6666666.148647.peg.1485 CDS NC_010729.1 1651619 1651506 -2 - 114 hypothetical protein - none -
fig|6666666.148647.peg.1486 CDS NC_010729.1 1653306 1651912 -3 - 1395 FIG00935678: hypothetical protein - none -
fig|6666666.148647.peg.1487 CDS NC_010729.1 1653564 1653725 3 + 162 hypothetical protein - none -
fig|6666666.148647.peg.1488 CDS NC_010729.1 1654336 1654145 -1 - 192 hypothetical protein - none -
fig|6666666.148647.peg.1489 CDS NC_010729.1 1656583 1654445 -1 - 2139 FIG00936757: hypothetical protein - none -
fig|6666666.148647.peg.1490 CDS NC_010729.1 1658017 1656599 -1 - 1419 FIG00761799: membrane protein - none -
fig|6666666.148647.peg.1491 CDS NC_010729.1 1659520 1658039 -1 - 1482 Polysaccharide biosynthesis protein - none -
fig|6666666.148647.peg.1492 CDS NC_010729.1 1660619 1659567 -2 - 1053 Holliday junction DNA helicase RuvB RuvABC plus a hypothetical
fig|6666666.148647.peg.1493 CDS NC_010729.1 1661090 1661221 2 + 132 hypothetical protein - none -
fig|6666666.148647.peg.1494 CDS NC_010729.1 1661501 1662013 2 + 513 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) DNA repair, bacterial
fig|6666666.148647.peg.1495 CDS NC_010729.1 1662096 1662434 3 + 339 Preprotein translocase subunit YajC (TC 3.A.5.1.1) CBSS-211586.1.peg.2832
fig|6666666.148647.peg.1496 CDS NC_010729.1 1662562 1663569 1 + 1008 FIG00935560: hypothetical protein - none -
fig|6666666.148647.peg.1497 CDS NC_010729.1 1663576 1664184 1 + 609 Dephospho-CoA kinase (EC 2.7.1.24) Coenzyme A Biosynthesis
fig|6666666.148647.peg.1498 CDS NC_010729.1 1664291 1664722 2 + 432 FIG00937286: hypothetical protein - none -
fig|6666666.148647.peg.1499 CDS NC_010729.1 1664798 1665988 2 + 1191 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29) Glycine Biosynthesis;
Glycine and Serine Utilization
fig|6666666.148647.peg.1500 CDS NC_010729.1 1666101 1666814 3 + 714 Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) Cobalamin synthesis;
Coenzyme B12 biosynthesis
fig|6666666.148647.peg.1501 CDS NC_010729.1 1667663 1666905 -2 - 759 FIG00935545: hypothetical protein - none -
fig|6666666.148647.peg.1502 CDS NC_010729.1 1667824 1668669 1 + 846 Pantoate--beta-alanine ligase (EC 6.3.2.1) Coenzyme A Biosynthesis;
Coenzyme A Biosynthesis cluster;
Folate biosynthesis cluster
fig|6666666.148647.peg.1503 CDS NC_010729.1 1668659 1670206 2 + 1548 COG1649 predicted glycoside hydrolase - none -
fig|6666666.148647.peg.1504 CDS NC_010729.1 1670203 1671333 1 + 1131 Hypothetical radical SAM family enzyme, NOT coproporphyrinogen III oxidase, oxygen-independent Heat shock dnaK gene cluster extended;
Heme and Siroheme Biosynthesis
fig|6666666.148647.peg.1505 CDS NC_010729.1 1671373 1672407 1 + 1035 Low-specificity L-threonine aldolase (EC 4.1.2.5) Glycine Biosynthesis;
Threonine degradation
fig|6666666.148647.peg.1506 CDS NC_010729.1 1672593 1672910 3 + 318 FIG00935665: hypothetical protein - none -
fig|6666666.148647.peg.1507 CDS NC_010729.1 1674005 1673034 -2 - 972 Epoxyqueuosine (oQ) reductase QueG Queuosine-Archaeosine Biosynthesis
fig|6666666.148647.peg.1508 CDS NC_010729.1 1675020 1674016 -3 - 1005 FIG00935853: hypothetical protein - none -
fig|6666666.148647.peg.1509 CDS NC_010729.1 1675030 1675491 1 + 462 hypothetical protein - none -
fig|6666666.148647.peg.1510 CDS NC_010729.1 1675554 1675685 3 + 132 hypothetical protein - none -
fig|6666666.148647.peg.1511 CDS NC_010729.1 1675764 1676015 3 + 252 FIG00935839: hypothetical protein - none -
fig|6666666.148647.peg.1512 CDS NC_010729.1 1676038 1677048 1 + 1011 Mannose-6-phosphate isomerase (EC 5.3.1.8) Mannose Metabolism
fig|6666666.148647.peg.1513 CDS NC_010729.1 1677214 1677933 1 + 720 FIG00936211: hypothetical protein - none -
fig|6666666.148647.peg.1514 CDS NC_010729.1 1677917 1678519 2 + 603 ferric uptake transcriptional regulator - none -
fig|6666666.148647.peg.1515 CDS NC_010729.1 1678548 1679819 3 + 1272 Adenylosuccinate synthetase (EC 6.3.4.4) Purine conversions
fig|6666666.148647.peg.1516 CDS NC_010729.1 1679816 1681105 2 + 1290 Dihydrofolate synthase (EC 6.3.2.12) @ Folylpolyglutamate synthase (EC 6.3.2.17) Folate Biosynthesis;
Folate Biosynthesis
fig|6666666.148647.peg.1517 CDS NC_010729.1 1681209 1682546 3 + 1338 transporter, putative - none -
fig|6666666.148647.peg.1518 CDS NC_010729.1 1683100 1682945 -1 - 156 hypothetical protein - none -
fig|6666666.148647.peg.1519 CDS NC_010729.1 1686439 1685165 -1 - 1275 FIG00935917: hypothetical protein - none -
fig|6666666.148647.peg.1520 CDS NC_010729.1 1688876 1686729 -2 - 2148 Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) Queuosine-Archaeosine Biosynthesis
fig|6666666.148647.peg.1521 CDS NC_010729.1 1690236 1688983 -3 - 1254 Magnesium and cobalt efflux protein CorC CBSS-56780.10.peg.1536;
Copper homeostasis: copper tolerance;
Glycyl-tRNA synthetase containing cluster;
Magnesium transport;
tRNA-methylthiotransferase containing cluster
fig|6666666.148647.peg.1522 CDS NC_010729.1 1690937 1690233 -2 - 705 FIG00935793: hypothetical protein - none -
fig|6666666.148647.peg.1523 CDS NC_010729.1 1692350 1690968 -2 - 1383 TPR domain protein - none -
fig|6666666.148647.peg.1524 CDS NC_010729.1 1693666 1692362 -1 - 1305 putative outer membrane protein - none -
fig|6666666.148647.peg.1525 CDS NC_010729.1 1694393 1693659 -2 - 735 Pantothenate kinase type III, CoaX-like (EC 2.7.1.33) Coenzyme A Biosynthesis;
Coenzyme A Biosynthesis cluster
fig|6666666.148647.peg.1526 CDS NC_010729.1 1695156 1694449 -3 - 708 Sulfur carrier protein adenylyltransferase ThiF Thiamin biosynthesis
fig|6666666.148647.peg.1527 CDS NC_010729.1 1696503 1695286 -3 - 1218 Tripeptide aminopeptidase (EC 3.4.11.4) - none -
fig|6666666.148647.peg.1528 CDS NC_010729.1 1698499 1696520 -1 - 1980 Oligopeptide transporter, OPT family - none -
fig|6666666.148647.peg.1529 CDS NC_010729.1 1699707 1698688 -3 - 1020 hemagglutinin-related protein - none -
fig|6666666.148647.peg.1530 CDS NC_010729.1 1700033 1699839 -2 - 195 hypothetical protein - none -
fig|6666666.148647.peg.1531 CDS NC_010729.1 1703020 1700387 -1 - 2634 FIG00935563: hypothetical protein - none -
fig|6666666.148647.peg.1532 CDS NC_010729.1 1703884 1703024 -1 - 861 FIG00936461: hypothetical protein - none -
fig|6666666.148647.peg.1533 CDS NC_010729.1 1704792 1703920 -3 - 873 FIG00936242: hypothetical protein - none -
fig|6666666.148647.peg.1534 CDS NC_010729.1 1705044 1705850 3 + 807 Polysaccharide export outer membrane protein - none -
fig|6666666.148647.peg.1535 CDS NC_010729.1 1705857 1708322 3 + 2466 Tyrosine-protein kinase Wzc (EC 2.7.10.2) - none -
fig|6666666.148647.peg.1536 CDS NC_010729.1 1708332 1709075 3 + 744 capsular polysaccharide biosythesis protein, putative - none -
fig|6666666.148647.peg.1537 CDS NC_010729.1 1709234 1710349 2 + 1116 FIG00935748: hypothetical protein - none -
fig|6666666.148647.peg.1538 CDS NC_010729.1 1710387 1711100 3 + 714 Tetrapyrrole methylase family protein - none -
fig|6666666.148647.peg.1539 CDS NC_010729.1 1711104 1712510 3 + 1407 NOL1/NOP2/sun family protein - none -
fig|6666666.148647.peg.1540 CDS NC_010729.1 1713747 1712740 -3 - 1008 2-oxoglutarate oxidoreductase, beta subunit (EC 1.2.7.3) - none -
fig|6666666.148647.peg.1541 CDS NC_010729.1 1715633 1713774 -2 - 1860 2-oxoglutarate oxidoreductase, alpha subunit (EC 1.2.7.3) - none -
fig|6666666.148647.peg.1542 CDS NC_010729.1 1715924 1715781 -2 - 144 hypothetical protein - none -
fig|6666666.148647.peg.1543 CDS NC_010729.1 1715923 1716093 1 + 171 hypothetical protein - none -
fig|6666666.148647.peg.1544 CDS NC_010729.1 1717261 1716533 -1 - 729 Carbonic anhydrase (EC 4.2.1.1) - none -
fig|6666666.148647.peg.1545 CDS NC_010729.1 1717564 1718631 1 + 1068 hypothetical protein - none -
fig|6666666.148647.peg.1546 CDS NC_010729.1 1718720 1719772 2 + 1053 hypothetical protein - none -
fig|6666666.148647.peg.1547 CDS NC_010729.1 1719899 1720966 2 + 1068 hypothetical protein - none -
fig|6666666.148647.peg.1548 CDS NC_010729.1 1720984 1722084 1 + 1101 Probable Co/Zn/Cd efflux system membrane fusion protein Cobalt-zinc-cadmium resistance
fig|6666666.148647.peg.1549 CDS NC_010729.1 1722119 1725190 2 + 3072 putative cation efflux system - none -
fig|6666666.148647.peg.1550 CDS NC_010729.1 1725285 1726658 3 + 1374 outer membrane protein TolC, putative - none -
fig|6666666.148647.peg.1551 CDS NC_010729.1 1726698 1729829 3 + 3132 RND multidrug efflux transporter; Acriflavin resistance protein Multidrug Resistance Efflux Pumps
fig|6666666.148647.peg.1552 CDS NC_010729.1 1730076 1730201 3 + 126 hypothetical protein - none -
fig|6666666.148647.peg.1553 CDS NC_010729.1 1730198 1731037 2 + 840 esterase, putative - none -
fig|6666666.148647.peg.1554 CDS NC_010729.1 1731732 1731073 -3 - 660 FIG00935644: hypothetical protein - none -
fig|6666666.148647.peg.1555 CDS NC_010729.1 1732057 1731713 -1 - 345 FIG00935574: hypothetical protein - none -
fig|6666666.148647.peg.1556 CDS NC_010729.1 1732305 1732120 -3 - 186 hypothetical protein - none -
fig|6666666.148647.peg.1557 CDS NC_010729.1 1732477 1732358 -1 - 120 hypothetical protein - none -
fig|6666666.148647.peg.1558 CDS NC_010729.1 1732564 1733421 1 + 858 FIG00936250: hypothetical protein - none -
fig|6666666.148647.peg.1559 CDS NC_010729.1 1733705 1734565 2 + 861 FIG00936717: hypothetical protein - none -
fig|6666666.148647.peg.1560 CDS NC_010729.1 1734920 1735606 2 + 687 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) Proteolysis in bacteria, ATP-dependent
fig|6666666.148647.peg.1561 CDS NC_010729.1 1735709 1736878 2 + 1170 ATP-dependent Clp protease ATP-binding subunit ClpX Proteolysis in bacteria, ATP-dependent
fig|6666666.148647.peg.1562 CDS NC_010729.1 1736957 1739134 2 + 2178 ATP-dependent DNA helicase RecQ DNA repair, bacterial RecFOR pathway
fig|6666666.148647.peg.1563 CDS NC_010729.1 1739186 1740553 2 + 1368 Survival protein SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA) (EC 5.2.1.8) ECSIG4-SIG7;
Peptidyl-prolyl cis-trans isomerase;
Periplasmic Stress Response
fig|6666666.148647.peg.1564 CDS NC_010729.1 1740615 1742495 3 + 1881 FIG00937328: hypothetical protein - none -
fig|6666666.148647.peg.1565 CDS NC_010729.1 1742486 1742830 2 + 345 hypothetical protein - none -
fig|6666666.148647.peg.1566 CDS NC_010729.1 1742827 1744683 1 + 1857 DNA mismatch repair protein MutL DNA repair, bacterial MutL-MutS system
fig|6666666.148647.peg.1567 CDS NC_010729.1 1747707 1744939 -3 - 2769 FIG00935571: hypothetical protein - none -
fig|6666666.148647.peg.1568 CDS NC_010729.1 1748896 1748075 -1 - 822 FIG00935780: hypothetical protein - none -
fig|6666666.148647.peg.1569 CDS NC_010729.1 1749254 1748940 -2 - 315 FIG00935648: hypothetical protein - none -
fig|6666666.148647.peg.1570 CDS NC_010729.1 1750327 1750623 1 + 297 FIG034863: hypothetical protein CBSS-226186.1.peg.4416
fig|6666666.148647.peg.1571 CDS NC_010729.1 1750630 1750938 1 + 309 Cell division ZapA family protein CBSS-226186.1.peg.4416
fig|6666666.148647.peg.1572 CDS NC_010729.1 1751085 1752626 3 + 1542 2@1,3@1-cyclic-nucleotide 2@1-phosphodiesterase (EC 3.1.4.16) CBSS-226186.1.peg.4416;
Purine conversions;
pyrimidine conversions
fig|6666666.148647.peg.1573 CDS NC_010729.1 1752731 1754143 2 + 1413 Tpl protein - none -
fig|6666666.148647.peg.1574 CDS NC_010729.1 1754151 1754681 3 + 531 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) ABC transporter alkylphosphonate (TC 3.A.1.9.1)
fig|6666666.148647.peg.1575 CDS NC_010729.1 1754678 1755772 2 + 1095 DNA recombination and repair protein RecF Cell Division Subsystem including YidCD;
DNA repair, bacterial RecFOR pathway;
DNA replication cluster 1
fig|6666666.148647.peg.1576 CDS NC_010729.1 1755786 1756076 3 + 291 Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives DNA replication cluster 1
fig|6666666.148647.peg.1577 CDS NC_010729.1 1756823 1756125 -2 - 699 transcriptional regulator, Crp/Fnr family Oxidative stress
fig|6666666.148647.peg.1578 CDS NC_010729.1 1761413 1757112 -2 - 4302 DNA-directed RNA polymerase beta@1 subunit (EC 2.7.7.6) Mycobacterium virulence operon involved in DNA transcription;
RNA polymerase bacterial
fig|6666666.148647.peg.1579 CDS NC_010729.1 1765288 1761479 -1 - 3810 DNA-directed RNA polymerase beta subunit (EC 2.7.7.6) Mycobacterium virulence operon involved in DNA transcription;
RNA polymerase bacterial
fig|6666666.148647.peg.1580 CDS NC_010729.1 1765738 1765400 -1 - 339 LSU ribosomal protein L7/L12 (P1/P2) LSU ribosomal proteins cluster;
Ribosome LSU bacterial
fig|6666666.148647.peg.1581 CDS NC_010729.1 1766343 1765819 -3 - 525 LSU ribosomal protein L10p (P0) LSU ribosomal proteins cluster;
Ribosome LSU bacterial
fig|6666666.148647.peg.1582 CDS NC_010729.1 1767057 1766359 -3 - 699 LSU ribosomal protein L1p (L10Ae) LSU ribosomal proteins cluster;
Ribosome LSU bacterial
fig|6666666.148647.peg.1583 CDS NC_010729.1 1767410 1767078 -2 - 333 LSU ribosomal protein L11p (L12e) LSU ribosomal proteins cluster;
Ribosome LSU bacterial
fig|6666666.148647.peg.1584 CDS NC_010729.1 1768123 1767584 -1 - 540 Transcription antitermination protein NusG LSU ribosomal proteins cluster;
Transcription factors bacterial
fig|6666666.148647.peg.1585 CDS NC_010729.1 1768348 1768145 -1 - 204 Preprotein translocase subunit SecE (TC 3.A.5.1.1) LSU ribosomal proteins cluster
fig|6666666.148647.peg.1586 CDS NC_010729.1 1769277 1768507 -3 - 771 Translation elongation factor Tu Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Translation elongation factors bacterial;
Universal GTPases
fig|6666666.148647.peg.1587 CDS NC_010729.1 1769338 1769499 1 + 162 hypothetical protein - none -
fig|6666666.148647.peg.1588 CDS NC_010729.1 1771293 1770088 -3 - 1206 site-specific recombinase, phage integrase family / Ribosome hibernation protein YhbH Ribosome activity modulation
fig|6666666.148647.peg.1589 CDS NC_010729.1 1771561 1771370 -1 - 192 SSU ribosomal protein S21p Macromolecular synthesis operon;
Ribosome SSU bacterial
fig|6666666.148647.peg.1590 CDS NC_010729.1 1774245 1771723 -3 - 2523 Recombination inhibitory protein MutS2 DNA repair, bacterial MutL-MutS system
fig|6666666.148647.peg.1591 CDS NC_010729.1 1775574 1774255 -3 - 1320 Intramembrane protease RasP/YluC, implicated in cell division based on FtsL cleavage CBSS-83331.1.peg.3039;
Periplasmic Stress Response
fig|6666666.148647.peg.1592 CDS NC_010729.1 1775918 1775727 -2 - 192 hypothetical protein - none -
fig|6666666.148647.peg.1593 CDS NC_010729.1 1776051 1777571 3 + 1521 Na+/H+ antiporter - none -
fig|6666666.148647.peg.1594 CDS NC_010729.1 1779604 1777568 -1 - 2037 Excinuclease ABC subunit B DNA repair, UvrABC system
fig|6666666.148647.peg.1595 CDS NC_010729.1 1779637 1779792 1 + 156 FIG00936565: hypothetical protein - none -
fig|6666666.148647.peg.1596 CDS NC_010729.1 1780781 1779957 -2 - 825 Translation elongation factor Ts CBSS-312309.3.peg.1965;
Ribosome recycling related cluster;
Translation elongation factors bacterial
fig|6666666.148647.peg.1597 CDS NC_010729.1 1781765 1780920 -2 - 846 SSU ribosomal protein S2p (SAe) CBSS-312309.3.peg.1965;
Ribosome SSU bacterial;
Ribosome recycling related cluster
fig|6666666.148647.peg.1598 CDS NC_010729.1 1782286 1781900 -1 - 387 SSU ribosomal protein S9p (S16e) Ribosome SSU bacterial
fig|6666666.148647.peg.1599 CDS NC_010729.1 1782655 1782296 -1 - 360 LSU ribosomal protein L13p (L13Ae) Ribosome LSU bacterial
fig|6666666.148647.peg.1600 CDS NC_010729.1 1784195 1784332 2 + 138 hypothetical protein - none -
fig|6666666.148647.peg.1601 CDS NC_010729.1 1784753 1784878 2 + 126 hypothetical protein - none -
fig|6666666.148647.peg.1602 CDS NC_010729.1 1785478 1785017 -1 - 462 Phosphopantetheine adenylyltransferase (EC 2.7.7.3) CBSS-266117.6.peg.1260;
CBSS-269801.1.peg.1715;
Coenzyme A Biosynthesis
fig|6666666.148647.peg.1603 CDS NC_010729.1 1787443 1785509 -1 - 1935 Topoisomerase IV subunit B (EC 5.99.1.-) DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.148647.peg.1604 CDS NC_010729.1 1787980 1788483 1 + 504 FIG00935795: hypothetical protein - none -
fig|6666666.148647.peg.1605 CDS NC_010729.1 1788524 1789126 2 + 603 3@1-5@1 exonuclease domain protein - none -
fig|6666666.148647.peg.1606 CDS NC_010729.1 1789312 1790328 1 + 1017 LSU m5C1962 methyltransferase RlmI RNA methylation;
Ribosome biogenesis bacterial
fig|6666666.148647.peg.1607 CDS NC_010729.1 1791218 1790391 -2 - 828 probable glutamine ABC transporter - none -
fig|6666666.148647.peg.1608 CDS NC_010729.1 1793240 1791219 -2 - 2022 FIG00935733: hypothetical protein - none -
fig|6666666.148647.peg.1609 CDS NC_010729.1 1794435 1793287 -3 - 1149 Beta-propeller domains of methanol dehydrogenase type - none -
fig|6666666.148647.peg.1610 CDS NC_010729.1 1795212 1794616 -3 - 597 LemA family protein - none -
fig|6666666.148647.peg.1611 CDS NC_010729.1 1795837 1795250 -1 - 588 Flavoredoxin - none -
fig|6666666.148647.peg.1612 CDS NC_010729.1 1796321 1795866 -2 - 456 Aspartate carbamoyltransferase regulatory chain (PyrI) De Novo Pyrimidine Synthesis
fig|6666666.148647.peg.1613 CDS NC_010729.1 1797248 1796334 -2 - 915 Aspartate carbamoyltransferase (EC 2.1.3.2) De Novo Pyrimidine Synthesis
fig|6666666.148647.peg.1614 CDS NC_010729.1 1798035 1797295 -3 - 741 FIG00936115: hypothetical protein - none -
fig|6666666.148647.peg.1615 CDS NC_010729.1 1798849 1798061 -1 - 789 FIG00935706: hypothetical protein - none -
fig|6666666.148647.peg.1616 CDS NC_010729.1 1798817 1799005 2 + 189 hypothetical protein - none -
fig|6666666.148647.peg.1617 CDS NC_010729.1 1800849 1799422 -3 - 1428 Sialidase (EC 3.2.1.18) Galactosylceramide and Sulfatide metabolism
fig|6666666.148647.peg.1618 CDS NC_010729.1 1801429 1802886 1 + 1458 FIG00936311: hypothetical protein - none -
fig|6666666.148647.peg.1619 CDS NC_010729.1 1803733 1802981 -1 - 753 putative beta-phosphoglucomutase - none -
fig|6666666.148647.peg.1620 CDS NC_010729.1 1805847 1803751 -3 - 2097 ATP-dependent DNA helicase RecG (EC 3.6.1.-) - none -
fig|6666666.148647.peg.1621 CDS NC_010729.1 1806918 1805890 -3 - 1029 UDP-glucose 4-epimerase (EC 5.1.3.2) Lactose and Galactose Uptake and Utilization;
Rhamnose containing glycans
fig|6666666.148647.peg.1622 CDS NC_010729.1 1807533 1806928 -3 - 606 GTP-binding protein EngB Universal GTPases
fig|6666666.148647.peg.1623 CDS NC_010729.1 1807634 1808227 2 + 594 FIG00935819: hypothetical protein - none -
fig|6666666.148647.peg.1624 CDS NC_010729.1 1808230 1809699 1 + 1470 FIG00936367: hypothetical protein - none -
fig|6666666.148647.peg.1625 CDS NC_010729.1 1809862 1811061 1 + 1200 Methionine gamma-lyase (EC 4.4.1.11) Methionine Degradation
fig|6666666.148647.peg.1626 CDS NC_010729.1 1812487 1811402 -1 - 1086 Mobile element protein - none -
fig|6666666.148647.peg.1627 CDS NC_010729.1 1813187 1813068 -2 - 120 hypothetical protein - none -
fig|6666666.148647.peg.1628 CDS NC_010729.1 1814270 1813728 -2 - 543 FIG00936084: hypothetical protein - none -
fig|6666666.148647.peg.1629 CDS NC_010729.1 1817637 1814278 -3 - 3360 FIG00935998: hypothetical protein - none -
fig|6666666.148647.peg.1630 CDS NC_010729.1 1817688 1817840 3 + 153 hypothetical protein - none -
fig|6666666.148647.peg.1631 CDS NC_010729.1 1817925 1818494 3 + 570 FIG00936108: hypothetical protein - none -
fig|6666666.148647.peg.1632 CDS NC_010729.1 1818514 1819416 1 + 903 tRNA dimethylallyltransferase (EC 2.5.1.75) tRNA modification Bacteria;
tRNA processing
fig|6666666.148647.peg.1633 CDS NC_010729.1 1819556 1821070 2 + 1515 Polymyxin resistance protein ArnT, undecaprenyl phosphate-alpha-L-Ara4N transferase; Melittin resistance protein PqaB Lipid A-Ara4N pathway ( Polymyxin resistance )
fig|6666666.148647.peg.1634 CDS NC_010729.1 1821098 1822057 2 + 960 Glycosyltransferase - none -
fig|6666666.148647.peg.1635 CDS NC_010729.1 1822976 1822068 -2 - 909 FIG00935861: hypothetical protein - none -
fig|6666666.148647.peg.1636 CDS NC_010729.1 1825180 1823204 -1 - 1977 Transcription termination factor Rho Transcription factors bacterial
fig|6666666.148647.peg.1637 CDS NC_010729.1 1825857 1826375 3 + 519 DNA-binding protein, histone-like family - none -
fig|6666666.148647.peg.1638 CDS NC_010729.1 1826408 1827403 2 + 996 hypothetical protein - none -
fig|6666666.148647.peg.1639 CDS NC_010729.1 1827462 1828346 3 + 885 Glutamate formiminotransferase (EC 2.1.2.5) @ Glutamate formyltransferase 5-FCL-like protein;
Histidine Degradation
fig|6666666.148647.peg.1640 CDS NC_010729.1 1828468 1829718 1 + 1251 Imidazolonepropionase (EC 3.5.2.7) Histidine Degradation
fig|6666666.148647.peg.1641 CDS NC_010729.1 1829812 1830966 1 + 1155 FIG01176605: hypothetical protein - none -
fig|6666666.148647.peg.1642 CDS NC_010729.1 1831007 1832134 2 + 1128 FIG00935951: hypothetical protein - none -
fig|6666666.148647.peg.1643 CDS NC_010729.1 1832159 1832788 2 + 630 Formiminotetrahydrofolate cyclodeaminase (EC 4.3.1.4) 5-FCL-like protein;
One-carbon metabolism by tetrahydropterines
fig|6666666.148647.peg.1644 CDS NC_010729.1 1832779 1834284 1 + 1506 Histidine ammonia-lyase (EC 4.3.1.3) Histidine Degradation
fig|6666666.148647.peg.1645 CDS NC_010729.1 1834485 1834814 3 + 330 hypothetical protein - none -
fig|6666666.148647.peg.1646 CDS NC_010729.1 1836115 1834937 -1 - 1179 Na+/H+-dicarboxylate symporter - none -
fig|6666666.148647.peg.1647 CDS NC_010729.1 1837250 1836144 -2 - 1107 putative periplasmic protein kinase ArgK and related GTPases of G3E family - none -
fig|6666666.148647.peg.1648 CDS NC_010729.1 1838414 1837326 -2 - 1089 FIG00936423: hypothetical protein - none -
fig|6666666.148647.peg.1649 CDS NC_010729.1 1838829 1838446 -3 - 384 FIG00936528: hypothetical protein - none -
fig|6666666.148647.peg.1650 CDS NC_010729.1 1838893 1839234 1 + 342 FIG00935683: hypothetical protein - none -
fig|6666666.148647.peg.1651 CDS NC_010729.1 1840382 1839297 -2 - 1086 Mobile element protein - none -
fig|6666666.148647.peg.1652 CDS NC_010729.1 1840783 1843443 1 + 2661 Dipeptidyl-peptidase III (EC 3.4.14.4) - none -
fig|6666666.148647.peg.1653 CDS NC_010729.1 1844727 1843456 -3 - 1272 Seryl-tRNA synthetase (EC 6.1.1.11) Glycine and Serine Utilization;
tRNA aminoacylation, Ser
fig|6666666.148647.peg.1654 CDS NC_010729.1 1845084 1844827 -3 - 258 LSU ribosomal protein L27p CBSS-176279.3.peg.868;
Ribosome LSU bacterial
fig|6666666.148647.peg.1655 CDS NC_010729.1 1845429 1845112 -3 - 318 LSU ribosomal protein L21p CBSS-176279.3.peg.868;
Ribosome LSU bacterial
fig|6666666.148647.peg.1656 CDS NC_010729.1 1845693 1845490 -3 - 204 hypothetical protein - none -
fig|6666666.148647.peg.1657 CDS NC_010729.1 1846156 1846695 1 + 540 FIG00936112: hypothetical protein - none -
fig|6666666.148647.peg.1658 CDS NC_010729.1 1846692 1847645 3 + 954 Glycosyl transferase, family 2 - none -
fig|6666666.148647.peg.1659 CDS NC_010729.1 1847645 1848184 2 + 540 Nitroreductase family protein - none -
fig|6666666.148647.peg.1660 CDS NC_010729.1 1848217 1849194 1 + 978 Thiamin biosynthesis lipoprotein ApbE Iron-sulfur cluster assembly
fig|6666666.148647.peg.1661 CDS NC_010729.1 1849933 1849409 -1 - 525 Electron transport complex protein RnfA Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.148647.peg.1662 CDS NC_010729.1 1850596 1850006 -1 - 591 Electron transport complex protein RnfE Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.148647.peg.1663 CDS NC_010729.1 1851270 1850593 -3 - 678 Electron transport complex protein RnfG Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.148647.peg.1664 CDS NC_010729.1 1852250 1851267 -2 - 984 Electron transport complex protein RnfD Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.148647.peg.1665 CDS NC_010729.1 1853597 1852266 -2 - 1332 Electron transport complex protein RnfC Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.148647.peg.1666 CDS NC_010729.1 1854505 1853633 -1 - 873 Electron transport complex protein RnfB Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.148647.peg.1667 CDS NC_010729.1 1854937 1854515 -1 - 423 FIG00936370: hypothetical protein - none -
fig|6666666.148647.peg.1668 CDS NC_010729.1 1855119 1855244 3 + 126 hypothetical protein - none -
fig|6666666.148647.peg.1669 CDS NC_010729.1 1856586 1855294 -3 - 1293 TPR domain protein - none -
fig|6666666.148647.peg.1670 CDS NC_010729.1 1856750 1857088 2 + 339 ISPg3, transposase - none -
fig|6666666.148647.peg.1671 CDS NC_010729.1 1858408 1861905 1 + 3498 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) De Novo Purine Biosynthesis;
De Novo Purine Biosynthesis
fig|6666666.148647.peg.1672 CDS NC_010729.1 1861898 1863022 2 + 1125 Smf protein DNA processing chain A - none -
fig|6666666.148647.peg.1673 CDS NC_010729.1 1863037 1863933 1 + 897 Dolichol-phosphate mannosyltransferase (EC 2.4.1.83) in lipid-linked oligosaccharide synthesis cluster - none -
fig|6666666.148647.peg.1674 CDS NC_010729.1 1865216 1864131 -2 - 1086 Mobile element protein - none -
fig|6666666.148647.peg.1675 CDS NC_010729.1 1866203 1866448 2 + 246 secretion activator protein, putative - none -
fig|6666666.148647.peg.1676 CDS NC_010729.1 1867179 1866586 -3 - 594 Chromate transport protein - none -
fig|6666666.148647.peg.1677 CDS NC_010729.1 1867788 1867198 -3 - 591 Chromate transport protein - none -
fig|6666666.148647.peg.1678 CDS NC_010729.1 1869028 1867949 -1 - 1080 FIG00936301: hypothetical protein - none -
fig|6666666.148647.peg.1679 CDS NC_010729.1 1870587 1869037 -3 - 1551 FIG00935779: hypothetical protein - none -
fig|6666666.148647.peg.1680 CDS NC_010729.1 1871484 1870591 -3 - 894 FIG00936075: hypothetical protein - none -
fig|6666666.148647.peg.1681 CDS NC_010729.1 1871467 1871592 1 + 126 hypothetical protein - none -
fig|6666666.148647.peg.1682 CDS NC_010729.1 1872859 1871561 -1 - 1299 GldJ - none -
fig|6666666.148647.peg.1683 CDS NC_010729.1 1874034 1873093 -3 - 942 FIG00936640: hypothetical protein - none -
fig|6666666.148647.peg.1684 CDS NC_010729.1 1874338 1874117 -1 - 222 FIG00935798: hypothetical protein - none -
fig|6666666.148647.peg.1685 CDS NC_010729.1 1876032 1874527 -3 - 1506 Outer membrane protein assembly factor YaeT precursor Llipid A biosynthesis cluster
fig|6666666.148647.peg.1686 CDS NC_010729.1 1876238 1876086 -2 - 153 hypothetical protein - none -
fig|6666666.148647.peg.1687 CDS NC_010729.1 1876296 1877546 3 + 1251 ABC transporter permease - none -
fig|6666666.148647.peg.1688 CDS NC_010729.1 1877626 1878297 1 + 672 ABC transporter ATP-binding protein - none -
fig|6666666.148647.peg.1689 CDS NC_010729.1 1878518 1879894 2 + 1377 Macrolide-specific ABC-type efflux carrier (TC 3.A.1.122.1) - none -
fig|6666666.148647.peg.1690 CDS NC_010729.1 1879916 1881244 2 + 1329 ABC transporter permease - none -
fig|6666666.148647.peg.1691 CDS NC_010729.1 1881251 1883866 2 + 2616 NADP-dependent malic enzyme (EC 1.1.1.40) Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.148647.peg.1692 CDS NC_010729.1 1884531 1884094 -3 - 438 FIG00936006: hypothetical protein - none -
fig|6666666.148647.peg.1693 CDS NC_010729.1 1885003 1884566 -1 - 438 Ribose 5-phosphate isomerase B (EC 5.3.1.6) Pentose phosphate pathway
fig|6666666.148647.peg.1694 CDS NC_010729.1 1887117 1885090 -3 - 2028 Transketolase (EC 2.2.1.1) Pentose phosphate pathway
fig|6666666.148647.peg.1695 CDS NC_010729.1 1887561 1889381 3 + 1821 glycosyl hydrolase family 29 (alpha-L-fucosidase) - none -
fig|6666666.148647.peg.1696 CDS NC_010729.1 1889518 1890648 1 + 1131 Cysteine desulfurase (EC 2.8.1.7) Alanine biosynthesis;
CBSS-84588.1.peg.1247;
Iron-sulfur cluster assembly;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.148647.peg.1697 CDS NC_010729.1 1890632 1890856 2 + 225 FIG00936261: hypothetical protein - none -
fig|6666666.148647.peg.1698 CDS NC_010729.1 1890853 1891899 1 + 1047 Selenide,water dikinase (EC 2.7.9.3) Selenocysteine metabolism;
tRNA modification Bacteria
fig|6666666.148647.peg.1699 CDS NC_010729.1 1891935 1894442 3 + 2508 ApeH acylamino-acid-releasing enzyme (EC 3.4.19.1) - none -
fig|6666666.148647.peg.1700 CDS NC_010729.1 1895466 1894585 -3 - 882 Fructose-bisphosphate aldolase class I (EC 4.1.2.13) Glycolysis and Gluconeogenesis
fig|6666666.148647.peg.1701 CDS NC_010729.1 1897149 1896118 -3 - 1032 FIG00935720: hypothetical protein - none -
fig|6666666.148647.peg.1702 CDS NC_010729.1 1897422 1897691 3 + 270 SSU ribosomal protein S15p (S13e) Ribosome SSU bacterial
fig|6666666.148647.peg.1703 CDS NC_010729.1 1897895 1897707 -2 - 189 hypothetical protein - none -
fig|6666666.148647.peg.1704 CDS NC_010729.1 1897807 1898754 1 + 948 Zinc ABC transporter, periplasmic-binding protein ZnuA - none -
fig|6666666.148647.peg.1705 CDS NC_010729.1 1898759 1899373 2 + 615 Zinc ABC transporter, ATP-binding protein ZnuC - none -
fig|6666666.148647.peg.1706 CDS NC_010729.1 1899336 1899875 3 + 540 acetyltransferase, GNAT family - none -
fig|6666666.148647.peg.1707 CDS NC_010729.1 1900113 1903058 3 + 2946 Protein-export membrane protein SecD (TC 3.A.5.1.1) / Protein-export membrane protein SecF (TC 3.A.5.1.1) CBSS-211586.1.peg.2832;
CBSS-211586.1.peg.2832
fig|6666666.148647.peg.1708 CDS NC_010729.1 1903898 1903185 -2 - 714 Ribonuclease III (EC 3.1.26.3) RNA processing and degradation, bacterial
fig|6666666.148647.peg.1709 CDS NC_010729.1 1905238 1903982 -1 - 1257 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41) Fatty Acid Biosynthesis FASII
fig|6666666.148647.peg.1710 CDS NC_010729.1 1905484 1905248 -1 - 237 Acyl carrier protein Fatty Acid Biosynthesis FASII
fig|6666666.148647.peg.1711 CDS NC_010729.1 1905653 1906234 2 + 582 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) 5-FCL-like protein;
De Novo Purine Biosynthesis
fig|6666666.148647.peg.1712 CDS NC_010729.1 1906249 1907271 1 + 1023 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) ABC transporter alkylphosphonate (TC 3.A.1.9.1)
fig|6666666.148647.peg.1713 CDS NC_010729.1 1907297 1908838 2 + 1542 MG(2+) CHELATASE FAMILY PROTEIN / ComM-related protein - none -
fig|6666666.148647.peg.1714 CDS NC_010729.1 1908843 1909166 3 + 324 FIG00935993: hypothetical protein - none -
fig|6666666.148647.peg.1715 CDS NC_010729.1 1910062 1909556 -1 - 507 hypothetical protein - none -
fig|6666666.148647.peg.1716 CDS NC_010729.1 1910274 1911296 3 + 1023 Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20) tRNA aminoacylation, Phe
fig|6666666.148647.peg.1717 CDS NC_010729.1 1911315 1911989 3 + 675 Endonuclease III (EC 4.2.99.18) DNA Repair Base Excision
fig|6666666.148647.peg.1718 CDS NC_010729.1 1912051 1913388 1 + 1338 PAP2 superfamily protein - none -
fig|6666666.148647.peg.1719 CDS NC_010729.1 1916733 1913365 -3 - 3369 Transcription-repair coupling factor Cell division-ribosomal stress proteins cluster;
Transcription factors bacterial
fig|6666666.148647.peg.1720 CDS NC_010729.1 1917128 1917712 2 + 585 Heat shock protein GrpE GroEL GroES;
Heat shock dnaK gene cluster extended;
Protein chaperones
fig|6666666.148647.peg.1721 CDS NC_010729.1 1917755 1918906 2 + 1152 Chaperone protein DnaJ GroEL GroES;
Heat shock dnaK gene cluster extended;
Protein chaperones
fig|6666666.148647.peg.1722 CDS NC_010729.1 1918992 1919309 3 + 318 probably aromatic ring hydroxylating enzyme, evidenced by COGnitor; PaaD-like protein (DUF59) involved in Fe-S cluster assembly Iron-sulfur cluster assembly
fig|6666666.148647.peg.1723 CDS NC_010729.1 1919338 1920126 1 + 789 UDP-2,3-diacylglucosamine diphosphatase (EC 3.6.1.54) KDO2-Lipid A biosynthesis;
Llipid A biosynthesis cluster
fig|6666666.148647.peg.1724 CDS NC_010729.1 1920208 1920702 1 + 495 COG2110, Macro domain, possibly ADP-ribose binding module - none -
fig|6666666.148647.peg.1725 CDS NC_010729.1 1921069 1922256 1 + 1188 8-amino-7-oxononanoate synthase (EC 2.3.1.47) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.148647.peg.1726 CDS NC_010729.1 1922305 1922934 1 + 630 Uridine kinase (EC 2.7.1.48) pyrimidine conversions
fig|6666666.148647.peg.1727 CDS NC_010729.1 1922976 1924163 3 + 1188 FIG00936205: hypothetical protein - none -
fig|6666666.148647.peg.1728 CDS NC_010729.1 1924150 1924860 1 + 711 Dolichol-phosphate mannosyltransferase (EC 2.4.1.83) in lipid-linked oligosaccharide synthesis cluster - none -
fig|6666666.148647.peg.1729 CDS NC_010729.1 1924848 1925642 3 + 795 putative polysaccharide deacetylase - none -
fig|6666666.148647.peg.1730 CDS NC_010729.1 1926046 1926948 1 + 903 Mobile element protein - none -
fig|6666666.148647.peg.1731 CDS NC_010729.1 1927072 1928133 1 + 1062 Mobile element protein - none -
fig|6666666.148647.peg.1732 CDS NC_010729.1 1933343 1928550 -2 - 4794 hemagglutinin, putative - none -
fig|6666666.148647.peg.1733 CDS NC_010729.1 1933353 1933520 3 + 168 hypothetical protein - none -
fig|6666666.148647.peg.1734 CDS NC_010729.1 1935188 1934169 -2 - 1020 Acetyltransferase (EC 2.3.1.-) - none -
fig|6666666.148647.peg.1735 CDS NC_010729.1 1936098 1935169 -3 - 930 FIG00936386: hypothetical protein - none -
fig|6666666.148647.peg.1736 CDS NC_010729.1 1936300 1936187 -1 - 114 hypothetical protein - none -
fig|6666666.148647.peg.1737 CDS NC_010729.1 1936638 1936519 -3 - 120 hypothetical protein - none -
fig|6666666.148647.peg.1738 CDS NC_010729.1 1944634 1936748 -1 - 7887 hemagglutinin, putative - none -
fig|6666666.148647.peg.1739 CDS NC_010729.1 1946251 1945016 -1 - 1236 Nucleoside permease NupG - none -
fig|6666666.148647.peg.1740 CDS NC_010729.1 1947688 1946354 -1 - 1335 hypothetical protein - none -
fig|6666666.148647.peg.1741 CDS NC_010729.1 1948639 1947824 -1 - 816 Similar to glycogen synthase (EC 2.4.1.21) - none -
fig|6666666.148647.peg.1742 CDS NC_010729.1 1948607 1948858 2 + 252 FIG00936086: hypothetical protein - none -
fig|6666666.148647.peg.1743 CDS NC_010729.1 1949266 1951389 1 + 2124 ATP-dependent DNA helicase RecS (RecQ family) DNA repair, bacterial RecFOR pathway
fig|6666666.148647.peg.1744 CDS NC_010729.1 1951861 1951625 -1 - 237 hypothetical protein - none -
fig|6666666.148647.peg.1745 CDS NC_010729.1 1951864 1953537 1 + 1674 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) Biotin biosynthesis;
Biotin synthesis cluster
fig|6666666.148647.peg.1746 CDS NC_010729.1 1953709 1953921 1 + 213 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) ABC transporter alkylphosphonate (TC 3.A.1.9.1)
fig|6666666.148647.peg.1747 CDS NC_010729.1 1954643 1954140 -2 - 504 RNA polymerase sigma-70 factor, ECF subfamily - none -
fig|6666666.148647.peg.1748 CDS NC_010729.1 1954780 1955199 1 + 420 FIG00936527: hypothetical protein - none -
fig|6666666.148647.peg.1749 CDS NC_010729.1 1955415 1956692 3 + 1278 Enolase (EC 4.2.1.11) Glycolysis and Gluconeogenesis
fig|6666666.148647.peg.1750 CDS NC_010729.1 1957470 1956817 -3 - 654 FIG00936526: hypothetical protein - none -
fig|6666666.148647.peg.1751 CDS NC_010729.1 1958656 1958919 1 + 264 Cytochrome c nitrite reductase, small subunit NrfH Nitrate and nitrite ammonification
fig|6666666.148647.peg.1752 CDS NC_010729.1 1959302 1960501 2 + 1200 Cytochrome c552 precursor (EC 1.7.2.2) Nitrate and nitrite ammonification;
Soluble cytochromes and functionally related electron carriers
fig|6666666.148647.peg.1753 CDS NC_010729.1 1960572 1961867 3 + 1296 FIG00935607: hypothetical protein - none -
fig|6666666.148647.peg.1754 CDS NC_010729.1 1961860 1962675 1 + 816 Cytochrome c biogenesis protein CcsA - none -
fig|6666666.148647.peg.1755 CDS NC_010729.1 1962944 1963465 2 + 522 NAD(P)H oxidoreductase YRKL (EC 1.6.99.-) @ Putative NADPH-quinone reductase (modulator of drug activity B) @ Flavodoxin 2 Flavodoxin;
Flavodoxin
fig|6666666.148647.peg.1756 CDS NC_010729.1 1963462 1964226 1 + 765 3-deoxy-manno-octulosonate cytidylyltransferase (EC 2.7.7.38) KDO2-Lipid A biosynthesis
fig|6666666.148647.peg.1757 CDS NC_010729.1 1964270 1966291 2 + 2022 DNA primase (EC 2.7.7.-) CBSS-349161.4.peg.2417;
Macromolecular synthesis operon
fig|6666666.148647.peg.1758 CDS NC_010729.1 1966523 1966750 2 + 228 2-oxoglutarate oxidoreductase, delta subunit, putative (EC 1.2.7.3) - none -
fig|6666666.148647.peg.1759 CDS NC_010729.1 1966769 1967851 2 + 1083 2-oxoglutarate oxidoreductase, alpha subunit (EC 1.2.7.3) - none -
fig|6666666.148647.peg.1760 CDS NC_010729.1 1967872 1968051 1 + 180 FIG00936116: hypothetical protein - none -
fig|6666666.148647.peg.1761 CDS NC_010729.1 1968125 1968832 2 + 708 2-oxoglutarate oxidoreductase, beta subunit (EC 1.2.7.3) - none -
fig|6666666.148647.peg.1762 CDS NC_010729.1 1968861 1969406 3 + 546 2-oxoglutarate oxidoreductase, gamma subunit (EC 1.2.7.3) - none -
fig|6666666.148647.peg.1763 CDS NC_010729.1 1969636 1969487 -1 - 150 FIG00935756: hypothetical protein - none -
fig|6666666.148647.peg.1764 CDS NC_010729.1 1969658 1971946 2 + 2289 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II / Guanosine-3@1,5@1-bis(diphosphate) 3@1-pyrophosphohydrolase (EC 3.1.7.2) Stringent Response, (p)ppGpp metabolism;
Stringent Response, (p)ppGpp metabolism
fig|6666666.148647.peg.1765 CDS NC_010729.1 1972781 1972305 -2 - 477 V-type ATP synthase subunit K (EC 3.6.3.14) V-Type ATP synthase
fig|6666666.148647.peg.1766 CDS NC_010729.1 1974650 1972836 -2 - 1815 V-type ATP synthase subunit I (EC 3.6.3.14) V-Type ATP synthase
fig|6666666.148647.peg.1767 CDS NC_010729.1 1975261 1974647 -1 - 615 V-type ATP synthase subunit D (EC 3.6.3.14) V-Type ATP synthase
fig|6666666.148647.peg.1768 CDS NC_010729.1 1976596 1975277 -1 - 1320 V-type ATP synthase subunit B (EC 3.6.3.14) V-Type ATP synthase
fig|6666666.148647.peg.1769 CDS NC_010729.1 1978362 1976608 -3 - 1755 V-type ATP synthase subunit A (EC 3.6.3.14) V-Type ATP synthase
fig|6666666.148647.peg.1770 CDS NC_010729.1 1979310 1978372 -3 - 939 V-type ATP synthase subunit C (EC 3.6.3.14) V-Type ATP synthase
fig|6666666.148647.peg.1771 CDS NC_010729.1 1979904 1979314 -3 - 591 V-type ATP synthase subunit E (EC 3.6.3.14) V-Type ATP synthase
fig|6666666.148647.peg.1772 CDS NC_010729.1 1980084 1979944 -3 - 141 hypothetical protein - none -
fig|6666666.148647.peg.1773 CDS NC_010729.1 1980241 1980095 -1 - 147 hypothetical protein - none -
fig|6666666.148647.peg.1774 CDS NC_010729.1 1980656 1981873 2 + 1218 immunoreactive 46 kDa antigen PG99 - none -
fig|6666666.148647.peg.1775 CDS NC_010729.1 1984805 1981953 -2 - 2853 FIG00936088: hypothetical protein - none -
fig|6666666.148647.peg.1776 CDS NC_010729.1 1985137 1984961 -1 - 177 hypothetical protein - none -
fig|6666666.148647.peg.1777 CDS NC_010729.1 1985158 1985946 1 + 789 FIG00936443: hypothetical protein - none -
fig|6666666.148647.peg.1778 CDS NC_010729.1 1988873 1986093 -2 - 2781 DNA polymerase I (EC 2.7.7.7) DNA Repair Base Excision
fig|6666666.148647.peg.1779 CDS NC_010729.1 1990930 1988924 -1 - 2007 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) Glycogen metabolism
fig|6666666.148647.peg.1780 CDS NC_010729.1 1993230 1990927 -3 - 2304 sodium/hydrogen antiporter - none -
fig|6666666.148647.peg.1781 CDS NC_010729.1 1993781 1993996 2 + 216 FIG00936536: hypothetical protein - none -
fig|6666666.148647.peg.1782 CDS NC_010729.1 1994068 1995477 1 + 1410 FIG00936114: hypothetical protein - none -
fig|6666666.148647.peg.1783 CDS NC_010729.1 1995494 1997530 2 + 2037 Dipeptidyl carboxypeptidase Dcp (EC 3.4.15.5) Protein degradation
fig|6666666.148647.peg.1784 CDS NC_010729.1 1998849 1997647 -3 - 1203 Aminopeptidase C (EC 3.4.22.40) Protein degradation
fig|6666666.148647.peg.1785 CDS NC_010729.1 2000160 2000297 3 + 138 hypothetical protein - none -
fig|6666666.148647.peg.1786 CDS NC_010729.1 2000680 2000300 -1 - 381 Endoribonuclease L-PSP - none -
fig|6666666.148647.peg.1787 CDS NC_010729.1 2001455 2000706 -2 - 750 23S rRNA (guanosine-2@1-O-) -methyltransferase rlmB (EC 2.1.1.-) RNA methylation
fig|6666666.148647.peg.1788 CDS NC_010729.1 2003107 2001452 -1 - 1656 DNA repair protein RecN DNA repair, bacterial
fig|6666666.148647.peg.1789 CDS NC_010729.1 2004030 2003122 -3 - 909 FIG00935642: hypothetical protein - none -
fig|6666666.148647.peg.1790 CDS NC_010729.1 2005241 2004027 -2 - 1215 Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) / Phosphopantothenoylcysteine synthetase (EC 6.3.2.5) Coenzyme A Biosynthesis;
Coenzyme A Biosynthesis
fig|6666666.148647.peg.1791 CDS NC_010729.1 2006046 2005267 -3 - 780 DNA Pol III Epsilon Chain - none -
fig|6666666.148647.peg.1792 CDS NC_010729.1 2007342 2006059 -3 - 1284 DNA polymerase III beta subunit (EC 2.7.7.7) Cell Division Subsystem including YidCD;
DNA replication cluster 1
fig|6666666.148647.peg.1793 CDS NC_010729.1 2007955 2007398 -1 - 558 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) 5-FCL-like protein;
Folate Biosynthesis;
One-carbon metabolism by tetrahydropterines
fig|6666666.148647.peg.1794 CDS NC_010729.1 2009549 2007915 -2 - 1635 carboxy-terminal processing protease precursor - none -
fig|6666666.148647.peg.1795 CDS NC_010729.1 2010006 2009557 -3 - 450 dCMP deaminase (EC 3.5.4.12) - none -
fig|6666666.148647.peg.1796 CDS NC_010729.1 2010446 2010093 -2 - 354 hypothetical protein - none -
fig|6666666.148647.peg.1797 CDS NC_010729.1 2011108 2010611 -1 - 498 Flavodoxin 1 Flavodoxin
fig|6666666.148647.peg.1798 CDS NC_010729.1 2012407 2011247 -1 - 1161 Glycerate kinase (EC 2.7.1.31) Glycerate metabolism;
Glycine and Serine Utilization
fig|6666666.148647.peg.1799 CDS NC_010729.1 2013831 2012647 -3 - 1185 FIG00935464: hypothetical protein - none -
fig|6666666.148647.peg.1800 CDS NC_010729.1 2014130 2013960 -2 - 171 Glycerate kinase (EC 2.7.1.31) Glycerate metabolism;
Glycine and Serine Utilization
fig|6666666.148647.peg.1801 CDS NC_010729.1 2014589 2014143 -2 - 447 hypothetical protein - none -
fig|6666666.148647.peg.1802 CDS NC_010729.1 2017959 2014582 -3 - 3378 Rab family protein - none -
fig|6666666.148647.peg.1803 CDS NC_010729.1 2018103 2018243 3 + 141 hypothetical protein - none -
fig|6666666.148647.peg.1804 CDS NC_010729.1 2019256 2018735 -1 - 522 membrane protein, putative - none -
fig|6666666.148647.peg.1805 CDS NC_010729.1 2019460 2019293 -1 - 168 FIG00936346: hypothetical protein - none -
fig|6666666.148647.peg.1806 CDS NC_010729.1 2020172 2019507 -2 - 666 methlytransferase, UbiE/COQ5 family - none -
fig|6666666.148647.peg.1807 CDS NC_010729.1 2022548 2020569 -2 - 1980 Urocanate hydratase (EC 4.2.1.49) Histidine Degradation
fig|6666666.148647.peg.1808 CDS NC_010729.1 2023296 2022889 -3 - 408 Endonuclease (EC 3.1.-.-) - none -
fig|6666666.148647.peg.1809 CDS NC_010729.1 2024257 2023283 -1 - 975 hemolysin - none -
fig|6666666.148647.peg.1810 CDS NC_010729.1 2025096 2024269 -3 - 828 Hemolysin A - none -
fig|6666666.148647.peg.1811 CDS NC_010729.1 2026483 2025125 -1 - 1359 Na+/H+ antiporter NhaA type NhaA, NhaD and Sodium-dependent phosphate transporters
fig|6666666.148647.peg.1812 CDS NC_010729.1 2026614 2028086 3 + 1473 Cysteinyl-tRNA synthetase (EC 6.1.1.16) tRNA aminoacylation, Cys
fig|6666666.148647.peg.1813 CDS NC_010729.1 2028137 2029156 2 + 1020 FIG00936465: hypothetical protein - none -
fig|6666666.148647.peg.1814 CDS NC_010729.1 2029167 2030177 3 + 1011 Glycosyltransferase - none -
fig|6666666.148647.peg.1815 CDS NC_010729.1 2030420 2031652 2 + 1233 FIG00936489: hypothetical protein - none -
fig|6666666.148647.peg.1816 CDS NC_010729.1 2032260 2032102 -3 - 159 hypothetical protein - none -
fig|6666666.148647.peg.1817 CDS NC_010729.1 2034565 2032472 -1 - 2094 Alpha-L-fucosidase (EC 3.2.1.51) - none -
fig|6666666.148647.peg.1818 CDS NC_010729.1 2036587 2034569 -1 - 2019 Polyphosphate kinase (EC 2.7.4.1) Phosphate metabolism;
Polyphosphate;
Purine conversions
fig|6666666.148647.peg.1819 CDS NC_010729.1 2038039 2036819 -1 - 1221 GTP-binding protein HflX Hfl operon;
Universal GTPases
fig|6666666.148647.peg.1820 CDS NC_010729.1 2038118 2039152 2 + 1035 Selenophosphate-dependent tRNA 2-selenouridine synthase Selenocysteine metabolism;
tRNA modification Bacteria
fig|6666666.148647.peg.1821 CDS NC_010729.1 2039149 2039763 1 + 615 Hypothetical protein Cj1505c - none -
fig|6666666.148647.peg.1822 CDS NC_010729.1 2039904 2040566 3 + 663 FIG00936641: hypothetical protein - none -
fig|6666666.148647.peg.1823 CDS NC_010729.1 2041176 2041021 -3 - 156 hypothetical protein - none -
fig|6666666.148647.peg.1824 CDS NC_010729.1 2041288 2041605 1 + 318 hypothetical protein - none -
fig|6666666.148647.peg.1825 CDS NC_010729.1 2041638 2047895 3 + 6258 FIG00936030: hypothetical protein - none -
fig|6666666.148647.peg.1826 CDS NC_010729.1 2047880 2048422 2 + 543 FIG00936030: hypothetical protein - none -
fig|6666666.148647.peg.1827 CDS NC_010729.1 2049047 2050444 2 + 1398 FIG00936030: hypothetical protein - none -
fig|6666666.148647.peg.1828 CDS NC_010729.1 2051588 2052361 2 + 774 FIG00935701: hypothetical protein - none -
fig|6666666.148647.peg.1829 CDS NC_010729.1 2052465 2052776 3 + 312 FIG00936030: hypothetical protein - none -
fig|6666666.148647.peg.1830 CDS NC_010729.1 2052907 2054094 1 + 1188 FIG00936030: hypothetical protein - none -
fig|6666666.148647.peg.1831 CDS NC_010729.1 2054091 2054789 3 + 699 FIG00936372: hypothetical protein - none -
fig|6666666.148647.peg.1832 CDS NC_010729.1 2055213 2056502 3 + 1290 S-adenosylmethionine synthetase (EC 2.5.1.6) Methionine Degradation
fig|6666666.148647.peg.1833 CDS NC_010729.1 2057308 2056631 -1 - 678 Thiamin pyrophosphokinase (EC 2.7.6.2) Thiamin biosynthesis
fig|6666666.148647.peg.1834 CDS NC_010729.1 2057913 2057305 -3 - 609 Predicted thiamin transporter PnuT Thiamin biosynthesis
fig|6666666.148647.peg.1835 CDS NC_010729.1 2060302 2057918 -1 - 2385 Thiamin-regulated outer membrane receptor Omr1 Thiamin biosynthesis
fig|6666666.148647.peg.1836 CDS NC_010729.1 2061325 2060378 -1 - 948 Ribosome small subunit-stimulated GTPase EngC Universal GTPases
fig|6666666.148647.peg.1837 CDS NC_010729.1 2061970 2061410 -1 - 561 Ribosome recycling factor Ribosome recycling related cluster;
Translation termination factors bacterial
fig|6666666.148647.peg.1838 CDS NC_010729.1 2062726 2062007 -1 - 720 Uridine monophosphate kinase (EC 2.7.4.22) CBSS-312309.3.peg.1965;
Ribosome recycling related cluster
fig|6666666.148647.peg.1839 CDS NC_010729.1 2064800 2062809 -2 - 1992 FIG00898950: hypothetical protein - none -
fig|6666666.148647.peg.1840 CDS NC_010729.1 2064960 2064826 -3 - 135 hypothetical protein - none -
fig|6666666.148647.peg.1841 CDS NC_010729.1 2066392 2065490 -1 - 903 Mobile element protein - none -
fig|6666666.148647.peg.1842 CDS NC_010729.1 2067081 2067926 3 + 846 hypothetical protein - none -
fig|6666666.148647.peg.1843 CDS NC_010729.1 2068869 2068225 -3 - 645 Mobile element protein - none -
fig|6666666.148647.peg.1844 CDS NC_010729.1 2069310 2068915 -3 - 396 Mobile element protein - none -
fig|6666666.148647.peg.1845 CDS NC_010729.1 2070004 2069522 -1 - 483 LSU ribosomal protein L17p Ribosome LSU bacterial
fig|6666666.148647.peg.1846 CDS NC_010729.1 2071002 2070010 -3 - 993 DNA-directed RNA polymerase alpha subunit (EC 2.7.7.6) RNA polymerase bacterial
fig|6666666.148647.peg.1847 CDS NC_010729.1 2071620 2071015 -3 - 606 SSU ribosomal protein S4p (S9e) Ribosome SSU bacterial
fig|6666666.148647.peg.1848 CDS NC_010729.1 2072166 2071780 -3 - 387 SSU ribosomal protein S11p (S14e) Ribosome SSU bacterial
fig|6666666.148647.peg.1849 CDS NC_010729.1 2072558 2072178 -2 - 381 SSU ribosomal protein S13p (S18e) Ribosome SSU bacterial
fig|6666666.148647.peg.1850 CDS NC_010729.1 2072707 2072591 -1 - 117 LSU ribosomal protein L36p Ribosome LSU bacterial
fig|6666666.148647.peg.1851 CDS NC_010729.1 2072942 2072724 -2 - 219 Translation initiation factor 1 Translation initiation factors bacterial
fig|6666666.148647.peg.1852 CDS NC_010729.1 2073694 2072945 -1 - 750 Methionine aminopeptidase (EC 3.4.11.18) CBSS-312309.3.peg.1965;
Translation termination factors bacterial
fig|6666666.148647.peg.1853 CDS NC_010729.1 2075070 2073730 -3 - 1341 Preprotein translocase secY subunit (TC 3.A.5.1.1) - none -
fig|6666666.148647.peg.1854 CDS NC_010729.1 2075359 2075075 -1 - 285 LSU ribosomal protein L15p (L27Ae) Ribosome LSU bacterial
fig|6666666.148647.peg.1855 CDS NC_010729.1 2076216 2075743 -3 - 474 SSU ribosomal protein S5p (S2e) Ribosomal protein S5p acylation;
Ribosome SSU bacterial
fig|6666666.148647.peg.1856 CDS NC_010729.1 2076611 2076267 -2 - 345 LSU ribosomal protein L18p (L5e) Ribosome LSU bacterial
fig|6666666.148647.peg.1857 CDS NC_010729.1 2077037 2076630 -2 - 408 LSU ribosomal protein L6p (L9e) Ribosome LSU bacterial
fig|6666666.148647.peg.1858 CDS NC_010729.1 2077547 2077200 -2 - 348 SSU ribosomal protein S8p (S15Ae) Ribosome SSU bacterial
fig|6666666.148647.peg.1859 CDS NC_010729.1 2077915 2077646 -1 - 270 SSU ribosomal protein S14p (S29e) @ SSU ribosomal protein S14p (S29e), zinc-independent Ribosome SSU bacterial;
Ribosome SSU bacterial
fig|6666666.148647.peg.1860 CDS NC_010729.1 2078477 2077917 -2 - 561 LSU ribosomal protein L5p (L11e) Ribosome LSU bacterial
fig|6666666.148647.peg.1861 CDS NC_010729.1 2078761 2078477 -1 - 285 LSU ribosomal protein L24p (L26e) Ribosome LSU bacterial
fig|6666666.148647.peg.1862 CDS NC_010729.1 2079185 2078820 -2 - 366 LSU ribosomal protein L14p (L23e) Ribosome LSU bacterial
fig|6666666.148647.peg.1863 CDS NC_010729.1 2079441 2079187 -3 - 255 SSU ribosomal protein S17p (S11e) Ribosome SSU bacterial
fig|6666666.148647.peg.1864 CDS NC_010729.1 2079649 2079455 -1 - 195 LSU ribosomal protein L29p (L35e) Ribosome LSU bacterial
fig|6666666.148647.peg.1865 CDS NC_010729.1 2080041 2079655 -3 - 387 LSU ribosomal protein L16p (L10e) Ribosome LSU bacterial
fig|6666666.148647.peg.1866 CDS NC_010729.1 2080850 2080110 -2 - 741 SSU ribosomal protein S3p (S3e) Ribosome SSU bacterial
fig|6666666.148647.peg.1867 CDS NC_010729.1 2081261 2080857 -2 - 405 LSU ribosomal protein L22p (L17e) Ribosome LSU bacterial
fig|6666666.148647.peg.1868 CDS NC_010729.1 2081522 2081316 -2 - 207 SSU ribosomal protein S19p (S15e) Ribosome SSU bacterial
fig|6666666.148647.peg.1869 CDS NC_010729.1 2082432 2081608 -3 - 825 LSU ribosomal protein L2p (L8e) Ribosome LSU bacterial
fig|6666666.148647.peg.1870 CDS NC_010729.1 2082732 2082439 -3 - 294 LSU ribosomal protein L23p (L23Ae) Ribosome LSU bacterial
fig|6666666.148647.peg.1871 CDS NC_010729.1 2083376 2082747 -2 - 630 LSU ribosomal protein L4p (L1e) Ribosome LSU bacterial
fig|6666666.148647.peg.1872 CDS NC_010729.1 2083963 2083376 -1 - 588 LSU ribosomal protein L3p (L3e) Ribosome LSU bacterial
fig|6666666.148647.peg.1873 CDS NC_010729.1 2084321 2084016 -2 - 306 SSU ribosomal protein S10p (S20e) Ribosome SSU bacterial
fig|6666666.148647.peg.1874 CDS NC_010729.1 2086460 2084337 -2 - 2124 Translation elongation factor G Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Translation elongation factor G family;
Translation elongation factors bacterial;
Universal GTPases
fig|6666666.148647.peg.1875 CDS NC_010729.1 2086862 2086473 -2 - 390 SSU ribosomal protein S7p (S5e) Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Ribosome SSU bacterial
fig|6666666.148647.peg.1876 CDS NC_010729.1 2087446 2087186 -1 - 261 SSU ribosomal protein S12p (S23e) Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Ribosomal protein S12p Asp methylthiotransferase;
Ribosome SSU bacterial
fig|6666666.148647.peg.1877 CDS NC_010729.1 2089473 2088187 -3 - 1287 FIG00935796: hypothetical protein - none -
fig|6666666.148647.peg.1878 CDS NC_010729.1 2089675 2089508 -1 - 168 FIG00935518: hypothetical protein - none -
fig|6666666.148647.peg.1879 CDS NC_010729.1 2089631 2090938 2 + 1308 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.148647.peg.1880 CDS NC_010729.1 2090960 2091403 2 + 444 FIG00935916: hypothetical protein - none -
fig|6666666.148647.peg.1881 CDS NC_010729.1 2091396 2092202 3 + 807 Zinc ABC transporter, inner membrane permease protein ZnuB - none -
fig|6666666.148647.peg.1882 CDS NC_010729.1 2092195 2095677 1 + 3483 FIG00936378: hypothetical protein - none -
fig|6666666.148647.peg.1883 CDS NC_010729.1 2095873 2097123 1 + 1251 hypothetical protein - none -
fig|6666666.148647.peg.1884 CDS NC_010729.1 2097131 2097292 2 + 162 hypothetical protein - none -
fig|6666666.148647.peg.1885 CDS NC_010729.1 2098404 2097400 -3 - 1005 Malate dehydrogenase (EC 1.1.1.37) TCA Cycle
fig|6666666.148647.peg.1886 CDS NC_010729.1 2098866 2100026 3 + 1161 Transporter - none -
fig|6666666.148647.peg.1887 CDS NC_010729.1 2100406 2102106 1 + 1701 Glutaminyl-tRNA synthetase (EC 6.1.1.18) tRNA aminoacylation, Glu and Gln
fig|6666666.148647.peg.1888 CDS NC_010729.1 2102182 2102781 1 + 600 Alkaline phosphatase like protein Phosphate metabolism
fig|6666666.148647.peg.1889 CDS NC_010729.1 2102844 2103779 3 + 936 putative transporter - none -
fig|6666666.148647.peg.1890 CDS NC_010729.1 2103783 2104802 3 + 1020 NAD-dependent epimerase/dehydratase family protein - none -
fig|6666666.148647.peg.1891 CDS NC_010729.1 2105300 2105127 -2 - 174 hypothetical protein - none -
fig|6666666.148647.peg.1892 CDS NC_010729.1 2106818 2105523 -2 - 1296 4-hydroxybutyrate:acetyl-CoA CoA transferase (EC 2.3.1.-) - none -
fig|6666666.148647.peg.1893 CDS NC_010729.1 2107506 2107357 -3 - 150 hypothetical protein - none -
fig|6666666.148647.peg.1894 CDS NC_010729.1 2107713 2107525 -3 - 189 LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-independent Ribosome LSU bacterial;
Ribosome LSU bacterial
fig|6666666.148647.peg.1895 CDS NC_010729.1 2107936 2107733 -1 - 204 LSU ribosomal protein L28p Ribosome LSU bacterial
fig|6666666.148647.peg.1896 CDS NC_010729.1 2110462 2108195 -1 - 2268 Probable low-affinity inorganic phosphate transporter Phosphate metabolism
fig|6666666.148647.peg.1897 CDS NC_010729.1 2111252 2110659 -2 - 594 FIG00936044: hypothetical protein - none -
fig|6666666.148647.peg.1898 CDS NC_010729.1 2111549 2111397 -2 - 153 hypothetical protein - none -
fig|6666666.148647.peg.1899 CDS NC_010729.1 2111697 2112272 3 + 576 TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA - none -
fig|6666666.148647.peg.1900 CDS NC_010729.1 2112269 2113675 2 + 1407 bacterial sugar transferase - none -
fig|6666666.148647.peg.1901 CDS NC_010729.1 2113672 2115468 1 + 1797 Chloride channel protein - none -
fig|6666666.148647.peg.1902 CDS NC_010729.1 2116427 2115429 -2 - 999 FIG00936361: hypothetical protein - none -
fig|6666666.148647.peg.1903 CDS NC_010729.1 2116530 2117414 3 + 885 TPR-repeat-containing protein - none -
fig|6666666.148647.peg.1904 CDS NC_010729.1 2117823 2117698 -3 - 126 hypothetical protein - none -
fig|6666666.148647.peg.1905 CDS NC_010729.1 2119629 2118544 -3 - 1086 Mobile element protein - none -
fig|6666666.148647.peg.1906 CDS NC_010729.1 2120473 2119733 -1 - 741 Mu-like prophage protein gp29 - none -
fig|6666666.148647.peg.1907 CDS NC_010729.1 2121305 2120466 -2 - 840 DNA adenine methylase( EC:2.1.1.72 ) - none -
fig|6666666.148647.peg.1908 CDS NC_010729.1 2121869 2122921 2 + 1053 FIG00936307: hypothetical protein - none -
fig|6666666.148647.peg.1909 CDS NC_010729.1 2124803 2123712 -2 - 1092 FIG00935885: hypothetical protein - none -
fig|6666666.148647.peg.1910 CDS NC_010729.1 2125016 2126068 2 + 1053 FIG00936307: hypothetical protein - none -
fig|6666666.148647.peg.1911 CDS NC_010729.1 2128441 2126435 -1 - 2007 FIG00936766: hypothetical protein - none -
fig|6666666.148647.peg.1912 CDS NC_010729.1 2128557 2128438 -3 - 120 hypothetical protein - none -
fig|6666666.148647.peg.1913 CDS NC_010729.1 2128566 2128736 3 + 171 FIG00935519: hypothetical protein - none -
fig|6666666.148647.peg.1914 CDS NC_010729.1 2128851 2128687 -3 - 165 hypothetical protein - none -
fig|6666666.148647.peg.1915 CDS NC_010729.1 2129806 2130708 1 + 903 Mobile element protein - none -
fig|6666666.148647.peg.1916 CDS NC_010729.1 2130879 2131301 3 + 423 transposase, IS4 family protein - none -
fig|6666666.148647.peg.1917 CDS NC_010729.1 2132547 2131645 -3 - 903 Mobile element protein - none -
fig|6666666.148647.peg.1918 CDS NC_010729.1 2132710 2132826 1 + 117 ISPg6, transposase - none -
fig|6666666.148647.peg.1919 CDS NC_010729.1 2132899 2133021 1 + 123 IS1478 transposase - none -
fig|6666666.148647.peg.1920 CDS NC_010729.1 2134843 2133134 -1 - 1710 Putative carboxy-terminal processing protease (EC 3.4.21.102) - none -
fig|6666666.148647.peg.1921 CDS NC_010729.1 2135117 2135470 2 + 354 Mobile element protein - none -
fig|6666666.148647.peg.1922 CDS NC_010729.1 2137346 2135640 -2 - 1707 ABC transporter, ATP-binding protein, putative - none -
fig|6666666.148647.peg.1923 CDS NC_010729.1 2139147 2137393 -3 - 1755 ABC transporter ATP-binding protein - none -
fig|6666666.148647.peg.1924 CDS NC_010729.1 2140449 2139172 -3 - 1278 FIG00936125: hypothetical protein - none -
fig|6666666.148647.peg.1925 CDS NC_010729.1 2141244 2140453 -3 - 792 FIG00935715: hypothetical protein - none -
fig|6666666.148647.peg.1926 CDS NC_010729.1 2143727 2141322 -2 - 2406 Predicted exporter of the RND superfamily - none -
fig|6666666.148647.peg.1927 CDS NC_010729.1 2144367 2143768 -3 - 600 Transcriptional regulator, TetR family - none -
fig|6666666.148647.peg.1928 CDS NC_010729.1 2145584 2146486 2 + 903 Mobile element protein - none -
fig|6666666.148647.peg.1929 CDS NC_010729.1 2147248 2146958 -1 - 291 CRISPR-associated protein Cas2 CRISPRs
fig|6666666.148647.peg.1930 CDS NC_010729.1 2148038 2147268 -2 - 771 CRISPR-associated protein Cas1 CRISPRs
fig|6666666.148647.peg.1931 CDS NC_010729.1 2149315 2148230 -1 - 1086 Mobile element protein - none -
fig|6666666.148647.peg.1932 CDS NC_010729.1 2151707 2149419 -2 - 2289 Retron-type RNA-directed DNA polymerase (EC 2.7.7.49) Group II intron-associated genes
fig|6666666.148647.peg.1933 CDS NC_010729.1 2152509 2151763 -3 - 747 CRISPR-associated RAMP Cmr6 CRISP Cmr Cluster
fig|6666666.148647.peg.1934 CDS NC_010729.1 2152943 2152506 -2 - 438 CRISPR-associated RAMP Cmr5 CRISP Cmr Cluster
fig|6666666.148647.peg.1935 CDS NC_010729.1 2153641 2152940 -1 - 702 CRISPR-associated RAMP Cmr4 CRISP Cmr Cluster
fig|6666666.148647.peg.1936 CDS NC_010729.1 2154836 2153655 -2 - 1182 CRISPR-associated RAMP Cmr3 CRISP Cmr Cluster
fig|6666666.148647.peg.1937 CDS NC_010729.1 2156460 2154838 -3 - 1623 CRISPR-associated RAMP Cmr2 CRISP Cmr Cluster
fig|6666666.148647.peg.1938 CDS NC_010729.1 2157667 2156423 -1 - 1245 FIG00936276: hypothetical protein - none -
fig|6666666.148647.peg.1939 CDS NC_010729.1 2157919 2157683 -1 - 237 FIG00935910: hypothetical protein - none -
fig|6666666.148647.peg.1940 CDS NC_010729.1 2159504 2157921 -2 - 1584 FIG00935632: hypothetical protein - none -
fig|6666666.148647.peg.1941 CDS NC_010729.1 2160244 2162121 1 + 1878 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA Cell Division Subsystem including YidCD;
RNA modification and chromosome partitioning cluster;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.148647.peg.1942 CDS NC_010729.1 2162155 2163954 1 + 1800 Excinuclease ABC subunit C DNA repair, UvrABC system
fig|6666666.148647.peg.1943 CDS NC_010729.1 2163961 2164413 1 + 453 D-tyrosyl-tRNA(Tyr) deacylase (EC 3.6.1.n1) - none -
fig|6666666.148647.peg.1944 CDS NC_010729.1 2164418 2164768 2 + 351 FIG00936480: hypothetical protein - none -
fig|6666666.148647.peg.1945 CDS NC_010729.1 2164755 2165624 3 + 870 Deoxyribose-phosphate aldolase (EC 4.1.2.4) Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.148647.peg.1946 CDS NC_010729.1 2165665 2165826 1 + 162 FIG00935764: hypothetical protein - none -
fig|6666666.148647.peg.1947 CDS NC_010729.1 2166909 2165935 -3 - 975 Octaprenyl diphosphate synthase (EC 2.5.1.90) / Dimethylallyltransferase (EC 2.5.1.1) / (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10) / Geranylgeranyl diphosphate synthase (EC 2.5.1.29) Isoprenoid Biosynthesis;
Isoprenoid Biosynthesis;
Isoprenoid Biosynthesis: Interconversions;
Isoprenoinds for Quinones;
Isoprenoinds for Quinones;
Isoprenoinds for Quinones;
Isoprenoinds for Quinones;
Polyprenyl Diphosphate Biosynthesis;
Polyprenyl Diphosphate Biosynthesis;
Polyprenyl Diphosphate Biosynthesis
fig|6666666.148647.peg.1948 CDS NC_010729.1 2167605 2166967 -3 - 639 FIG00935689: hypothetical protein - none -
fig|6666666.148647.peg.1949 CDS NC_010729.1 2168207 2167626 -2 - 582 Signal peptidase I (EC 3.4.21.89) Signal peptidase
fig|6666666.148647.peg.1950 CDS NC_010729.1 2169639 2168242 -3 - 1398 Signal peptidase I (EC 3.4.21.89) Signal peptidase
fig|6666666.148647.peg.1951 CDS NC_010729.1 2170371 2169655 -3 - 717 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.148647.peg.1952 CDS NC_010729.1 2171769 2170432 -3 - 1338 dNTP triphosphohydrolase, broad substrate specificity, subgroup 3 Purine conversions;
dNTP triphosphohydrolase protein family
fig|6666666.148647.peg.1953 CDS NC_010729.1 2172767 2171919 -2 - 849 Putative membrane protein YeiH - none -
fig|6666666.148647.peg.1954 CDS NC_010729.1 2173420 2173779 1 + 360 FIG00936356: hypothetical protein - none -
fig|6666666.148647.peg.1955 CDS NC_010729.1 2174086 2176587 1 + 2502 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins Ton and Tol transport systems
fig|6666666.148647.peg.1956 CDS NC_010729.1 2177157 2177894 3 + 738 DNA recombination and repair protein RecO DNA repair, bacterial RecFOR pathway;
Glycyl-tRNA synthetase containing cluster
fig|6666666.148647.peg.1957 CDS NC_010729.1 2177967 2179715 3 + 1749 Phosphoglucomutase (EC 5.4.2.2) - none -
fig|6666666.148647.peg.1958 CDS NC_010729.1 2180231 2180037 -2 - 195 Mobile element protein - none -
fig|6666666.148647.peg.1959 CDS NC_010729.1 2181370 2180321 -1 - 1050 Mobile element protein - none -
fig|6666666.148647.peg.1960 CDS NC_010729.1 2182737 2182618 -3 - 120 hypothetical protein - none -
fig|6666666.148647.peg.1961 CDS NC_010729.1 2189780 2189610 -2 - 171 CRISPR-associated protein Cas2 CRISPRs
fig|6666666.148647.peg.1962 CDS NC_010729.1 2190889 2189873 -1 - 1017 CRISPR-associated protein Cas1 CRISPRs
fig|6666666.148647.peg.1963 CDS NC_010729.1 2191395 2190886 -3 - 510 CRISPR-associated RecB family exonuclease Cas4a CRISPRs
fig|6666666.148647.peg.1964 CDS NC_010729.1 2192523 2191513 -3 - 1011 FIG00936213: hypothetical protein - none -
fig|6666666.148647.peg.1965 CDS NC_010729.1 2193887 2192592 -2 - 1296 FIG00936107: hypothetical protein - none -
fig|6666666.148647.peg.1966 CDS NC_010729.1 2196018 2193898 -3 - 2121 CRISPR-associated helicase Cas3 CRISPRs
fig|6666666.148647.peg.1967 CDS NC_010729.1 2196622 2196035 -1 - 588 FIG00936753: hypothetical protein - none -
fig|6666666.148647.peg.1968 CDS NC_010729.1 2197294 2196629 -1 - 666 CRISPR-associated protein, TM1814 family - none -
fig|6666666.148647.peg.1969 CDS NC_010729.1 2197365 2197508 3 + 144 hypothetical protein - none -
fig|6666666.148647.peg.1970 CDS NC_010729.1 2199873 2197942 -3 - 1932 putative sulfatase - none -
fig|6666666.148647.peg.1971 CDS NC_010729.1 2202420 2199877 -3 - 2544 FIG00935645: hypothetical protein - none -
fig|6666666.148647.peg.1972 CDS NC_010729.1 2203556 2202585 -2 - 972 Methionyl-tRNA formyltransferase (EC 2.1.2.9) Conserved gene cluster associated with Met-tRNA formyltransferase;
Translation initiation factors bacterial
fig|6666666.148647.peg.1973 CDS NC_010729.1 2209222 2204102 -1 - 5121 hemagglutinin, putative - none -
fig|6666666.148647.peg.1974 CDS NC_010729.1 2210004 2210537 3 + 534 Alpha-ribazole-5@1-phosphate phosphatase (EC 3.1.3.73) Cobalamin synthesis;
Coenzyme B12 biosynthesis;
Phosphoglycerate mutase protein family
fig|6666666.148647.peg.1975 CDS NC_010729.1 2210677 2211090 1 + 414 FIG00935520: hypothetical protein - none -
fig|6666666.148647.peg.1976 CDS NC_010729.1 2211099 2211608 3 + 510 Cys-tRNA(Pro) deacylase YbaK tRNA aminoacylation, Pro
fig|6666666.148647.peg.1977 CDS NC_010729.1 2211642 2214194 3 + 2553 FIG00935826: hypothetical protein - none -
fig|6666666.148647.peg.1978 CDS NC_010729.1 2214865 2215398 1 + 534 FIG00936499: hypothetical protein - none -
fig|6666666.148647.peg.1979 CDS NC_010729.1 2215466 2215861 2 + 396 FIG00935940: hypothetical protein - none -
fig|6666666.148647.peg.1980 CDS NC_010729.1 2218401 2215888 -3 - 2514 Helicase PriA essential for oriC/DnaA-independent DNA replication Conserved gene cluster associated with Met-tRNA formyltransferase
fig|6666666.148647.peg.1981 CDS NC_010729.1 2219907 2218435 -3 - 1473 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.148647.peg.1982 CDS NC_010729.1 2220721 2219930 -1 - 792 Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1) De Novo Pyrimidine Synthesis
fig|6666666.148647.peg.1983 CDS NC_010729.1 2220923 2221600 2 + 678 tRNA (Guanine37-N1) -methyltransferase (EC 2.1.1.31) RNA methylation;
Ribosome biogenesis bacterial;
tRNA modification Bacteria
fig|6666666.148647.peg.1984 CDS NC_010729.1 2221632 2222543 3 + 912 Potassium voltage-gated channel subfamily KQT; possible potassium channel, VIC family Potassium homeostasis
fig|6666666.148647.peg.1985 CDS NC_010729.1 2222833 2222612 -1 - 222 hypothetical protein - none -
fig|6666666.148647.peg.1986 CDS NC_010729.1 2223228 2222830 -3 - 399 N-acetylmuramoyl-L-alanine amidase - none -
fig|6666666.148647.peg.1987 CDS NC_010729.1 2223895 2223419 -1 - 477 DNA-binding protein, histone-like family - none -
fig|6666666.148647.peg.1988 CDS NC_010729.1 2224042 2223911 -1 - 132 hypothetical protein - none -
fig|6666666.148647.peg.1989 CDS NC_010729.1 2224019 2224135 2 + 117 hypothetical protein - none -
fig|6666666.148647.peg.1990 CDS NC_010729.1 2224987 2224256 -1 - 732 FIG00935880: hypothetical protein - none -
fig|6666666.148647.peg.1991 CDS NC_010729.1 2226632 2225115 -2 - 1518 Thiol:disulfide interchange protein - none -
fig|6666666.148647.peg.1992 CDS NC_010729.1 2227283 2228377 2 + 1095 FIG137478: Hypothetical protein YbgI - none -
fig|6666666.148647.peg.1993 CDS NC_010729.1 2228395 2229150 1 + 756 FIG137478: Hypothetical protein tRNA modification Bacteria
fig|6666666.148647.peg.1994 CDS NC_010729.1 2229414 2230778 3 + 1365 tRNA(Ile)-lysidine synthetase (EC 6.3.4.19) Cell division-ribosomal stress proteins cluster;
Folate biosynthesis cluster;
tRNA modification Bacteria;
tRNA processing
fig|6666666.148647.peg.1995 CDS NC_010729.1 2233058 2230773 -2 - 2286 FIG00935898: hypothetical protein - none -
fig|6666666.148647.peg.1996 CDS NC_010729.1 2233198 2233085 -1 - 114 hypothetical protein - none -
fig|6666666.148647.peg.1997 CDS NC_010729.1 2233499 2233149 -2 - 351 FIG00936505: hypothetical protein - none -
fig|6666666.148647.peg.1998 CDS NC_010729.1 2233919 2233542 -2 - 378 FIG00936046: hypothetical protein - none -
fig|6666666.148647.peg.1999 CDS NC_010729.1 2234450 2234175 -2 - 276 hypothetical protein - none -
fig|6666666.148647.peg.2000 CDS NC_010729.1 2234676 2235569 3 + 894 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.148647.peg.2001 CDS NC_010729.1 2235598 2236251 1 + 654 Dethiobiotin synthetase (EC 6.3.3.3) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.148647.peg.2002 CDS NC_010729.1 2237028 2236357 -3 - 672 lipoprotein PG3 - none -
fig|6666666.148647.peg.2003 CDS NC_010729.1 2238074 2237094 -2 - 981 putative dihydropyrimidine dehydrogenase [NADP+] precursor - none -
fig|6666666.148647.peg.2004 CDS NC_010729.1 2239123 2239254 1 + 132 hypothetical protein - none -
fig|6666666.148647.peg.2005 CDS NC_010729.1 2239262 2239444 2 + 183 hypothetical protein - none -
fig|6666666.148647.peg.2006 CDS NC_010729.1 2239546 2240733 1 + 1188 sensor histidine kinase - none -
fig|6666666.148647.peg.2007 CDS NC_010729.1 2241193 2242947 1 + 1755 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) DNA Repair Base Excision;
DNA repair, bacterial RecFOR pathway
fig|6666666.148647.peg.2008 CDS NC_010729.1 2242944 2243999 3 + 1056 FIG00936511: hypothetical protein - none -
fig|6666666.148647.peg.2009 CDS NC_010729.1 2244298 2245830 1 + 1533 FIG00935736: hypothetical protein - none -
fig|6666666.148647.peg.2010 CDS NC_010729.1 2245863 2247047 3 + 1185 Nicotinate phosphoribosyltransferase (EC 2.4.2.11) NAD and NADP cofactor biosynthesis global;
Redox-dependent regulation of nucleus processes
fig|6666666.148647.peg.2011 CDS NC_010729.1 2247047 2247640 2 + 594 Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) NAD and NADP cofactor biosynthesis global
fig|6666666.148647.peg.2012 CDS NC_010729.1 2247654 2248037 3 + 384 hypothetical protein - none -
fig|6666666.148647.peg.2013 CDS NC_010729.1 2248044 2248226 3 + 183 hypothetical protein - none -
fig|6666666.148647.peg.2014 CDS NC_010729.1 2248330 2249811 1 + 1482 COG1649 predicted glycoside hydrolase - none -
fig|6666666.148647.peg.2015 CDS NC_010729.1 2249816 2251858 2 + 2043 putative helicase - none -
fig|6666666.148647.peg.2016 CDS NC_010729.1 2253134 2251956 -2 - 1179 FIG00936515: hypothetical protein - none -
fig|6666666.148647.peg.2017 CDS NC_010729.1 2256270 2253151 -3 - 3120 Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA Cobalt-zinc-cadmium resistance;
Cobalt-zinc-cadmium resistance
fig|6666666.148647.peg.2018 CDS NC_010729.1 2257468 2256290 -1 - 1179 Cation efflux system protein - none -
fig|6666666.148647.peg.2019 CDS NC_010729.1 2258426 2258007 -2 - 420 FIG00936254: hypothetical protein - none -
fig|6666666.148647.peg.2020 CDS NC_010729.1 2260012 2258498 -1 - 1515 NAD(P)HX epimerase / NAD(P)HX dehydratase YjeE;
YjeE
fig|6666666.148647.peg.2021 CDS NC_010729.1 2260808 2260017 -2 - 792 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase (EC 2.3.1.129) KDO2-Lipid A biosynthesis;
Llipid A biosynthesis cluster
fig|6666666.148647.peg.2022 CDS NC_010729.1 2262196 2260808 -1 - 1389 N-acetylglucosamine deacetylase (EC 3.5.1.-) / 3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabZ form (EC 4.2.1.59) Fatty Acid Biosynthesis FASII;
Llipid A biosynthesis cluster
fig|6666666.148647.peg.2023 CDS NC_010729.1 2263224 2262175 -3 - 1050 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC 2.3.1.-) KDO2-Lipid A biosynthesis;
Llipid A biosynthesis cluster
fig|6666666.148647.peg.2024 CDS NC_010729.1 2264147 2263317 -2 - 831 Orotidine 5@1-phosphate decarboxylase (EC 4.1.1.23) De Novo Pyrimidine Synthesis;
Riboflavin synthesis cluster
fig|6666666.148647.peg.2025 CDS NC_010729.1 2265249 2264164 -3 - 1086 Peptide chain release factor 1 A Gammaproteobacteria Cluster Relating to Translation;
CBSS-216600.3.peg.802;
Translation termination factors bacterial
fig|6666666.148647.peg.2026 CDS NC_010729.1 2266440 2265274 -3 - 1167 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) De Novo Purine Biosynthesis
fig|6666666.148647.peg.2027 CDS NC_010729.1 2267410 2266469 -1 - 942 Hemagglutinin - none -
fig|6666666.148647.peg.2028 CDS NC_010729.1 2268341 2267643 -2 - 699 FIG00936191: hypothetical protein - none -
fig|6666666.148647.peg.2029 CDS NC_010729.1 2269555 2268314 -1 - 1242 abortive infection protein, putative - none -
fig|6666666.148647.peg.2030 CDS NC_010729.1 2269908 2269630 -3 - 279 hypothetical protein - none -
fig|6666666.148647.peg.2031 CDS NC_010729.1 2270055 2272109 3 + 2055 FIG00936482: hypothetical protein - none -
fig|6666666.148647.peg.2032 CDS NC_010729.1 2272171 2273073 1 + 903 FIG00935759: hypothetical protein - none -
fig|6666666.148647.peg.2033 CDS NC_010729.1 2273079 2273864 3 + 786 FIG00936274: hypothetical protein - none -
fig|6666666.148647.peg.2034 CDS NC_010729.1 2273960 2275159 2 + 1200 L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17) Glycine and Serine Utilization;
Glycine and Serine Utilization;
Pyruvate Alanine Serine Interconversions;
Pyruvate Alanine Serine Interconversions
fig|6666666.148647.peg.2035 CDS NC_010729.1 2275225 2275112 -1 - 114 hypothetical protein - none -
fig|6666666.148647.peg.2036 CDS NC_010729.1 2275300 2276604 1 + 1305 Alpha-galactosidase (EC 3.2.1.22) Galactosylceramide and Sulfatide metabolism;
Lactose and Galactose Uptake and Utilization
fig|6666666.148647.peg.2037 CDS NC_010729.1 2278437 2276623 -3 - 1815 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) - none -
fig|6666666.148647.peg.2038 CDS NC_010729.1 2279203 2278583 -1 - 621 Arabinose 5-phosphate isomerase (EC 5.3.1.13) KDO2-Lipid A biosynthesis
fig|6666666.148647.peg.2039 CDS NC_010729.1 2279403 2280620 3 + 1218 putative zinc protease ymxG - none -
fig|6666666.148647.peg.2040 CDS NC_010729.1 2281649 2282128 2 + 480 Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1) Oxidative stress;
Oxidative stress;
Oxidative stress
fig|6666666.148647.peg.2041 CDS NC_010729.1 2283531 2282257 -3 - 1275 ABC-type multidrug transport system, permease component - none -
fig|6666666.148647.peg.2042 CDS NC_010729.1 2284714 2283533 -1 - 1182 ABC-type multidrug transport system, permease component - none -
fig|6666666.148647.peg.2043 CDS NC_010729.1 2285712 2284717 -3 - 996 Type I secretion system, membrane fusion protein LapC - none -
fig|6666666.148647.peg.2044 CDS NC_010729.1 2287266 2285761 -3 - 1506 Type I secretion system, outer membrane component LapE - none -
fig|6666666.148647.peg.2045 CDS NC_010729.1 2287661 2287780 2 + 120 hypothetical protein - none -
fig|6666666.148647.peg.2046 CDS NC_010729.1 2290857 2288182 -3 - 2676 DNA mismatch repair protein MutS DNA repair, bacterial MutL-MutS system;
DNA repair system including RecA, MutS and a hypothetical protein
fig|6666666.148647.peg.2047 CDS NC_010729.1 2291842 2291150 -1 - 693 FIG000859: hypothetical protein YebC Riboflavin, FMN and FAD metabolism in plants;
RuvABC plus a hypothetical
fig|6666666.148647.peg.2048 CDS NC_010729.1 2294380 2291921 -1 - 2460 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) tRNA aminoacylation, Phe
fig|6666666.148647.peg.2049 CDS NC_010729.1 2295217 2294909 -1 - 309 hypothetical protein - none -
fig|6666666.148647.peg.2050 CDS NC_010729.1 2295495 2295382 -3 - 114 hypothetical protein - none -
fig|6666666.148647.peg.2051 CDS NC_010729.1 2297170 2297298 1 + 129 hypothetical protein - none -
fig|6666666.148647.peg.2052 CDS NC_010729.1 2304376 2301152 -1 - 3225 UvrD/REP helicase domain protein - none -
fig|6666666.148647.peg.2053 CDS NC_010729.1 2305233 2304373 -3 - 861 Putative hemolysin - none -
fig|6666666.148647.peg.2054 CDS NC_010729.1 2306204 2305278 -2 - 927 ClpB protein Protein chaperones;
Proteolysis in bacteria, ATP-dependent
fig|6666666.148647.peg.2055 CDS NC_010729.1 2306947 2306216 -1 - 732 oxidoreductase, short chain dehydrogenase/reductase family - none -
fig|6666666.148647.peg.2056 CDS NC_010729.1 2307342 2306953 -3 - 390 Glycerol-3-phosphate cytidylyltransferase (EC 2.7.7.39) Rhamnose containing glycans
fig|6666666.148647.peg.2057 CDS NC_010729.1 2308530 2307433 -3 - 1098 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262) ECSIG4-SIG7;
Pyridoxin (Vitamin B6) Biosynthesis
fig|6666666.148647.peg.2058 CDS NC_010729.1 2309629 2308574 -1 - 1056 FIG00936241: hypothetical protein - none -
fig|6666666.148647.peg.2059 CDS NC_010729.1 2310745 2309720 -1 - 1026 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) Conserved gene cluster associated with Met-tRNA formyltransferase;
RNA methylation
fig|6666666.148647.peg.2060 CDS NC_010729.1 2310970 2310791 -1 - 180 FIG00935767: hypothetical protein - none -
fig|6666666.148647.peg.2061 CDS NC_010729.1 2311232 2311405 2 + 174 FIG00936383: hypothetical protein - none -
fig|6666666.148647.peg.2062 CDS NC_010729.1 2312774 2311410 -2 - 1365 Histidyl-tRNA synthetase (EC 6.1.1.21) tRNA aminoacylation, His
fig|6666666.148647.peg.2063 CDS NC_010729.1 2313323 2312835 -2 - 489 Dihydrofolate reductase (EC 1.5.1.3) 5-FCL-like protein;
Folate Biosynthesis
fig|6666666.148647.peg.2064 CDS NC_010729.1 2314163 2313369 -2 - 795 Thymidylate synthase (EC 2.1.1.45) Folate Biosynthesis;
pyrimidine conversions
fig|6666666.148647.peg.2065 CDS NC_010729.1 2314396 2315193 1 + 798 Zn-dependent protease with chaperone function PA4632 - none -
fig|6666666.148647.peg.2066 CDS NC_010729.1 2315403 2316284 3 + 882 FIG00936452: hypothetical protein - none -
fig|6666666.148647.peg.2067 CDS NC_010729.1 2318463 2316526 -3 - 1938 ABC transporter ATP-binding protein - none -
fig|6666666.148647.peg.2068 CDS NC_010729.1 2320547 2318460 -2 - 2088 TPR repeat precursor - none -
fig|6666666.148647.peg.2069 CDS NC_010729.1 2321260 2320583 -1 - 678 Peptide deformylase (EC 3.5.1.88) Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Translation termination factors bacterial
fig|6666666.148647.peg.2070 CDS NC_010729.1 2321895 2321257 -3 - 639 Putative Holliday junction resolvase YggF Cluster containing Alanyl-tRNA synthetase;
Cluster containing Glutathione synthetase
fig|6666666.148647.peg.2071 CDS NC_010729.1 2322172 2327898 1 + 5727 FIG00936309: hypothetical protein - none -
fig|6666666.148647.peg.2072 CDS NC_010729.1 2327912 2328856 2 + 945 2-dehydropantoate 2-reductase (EC 1.1.1.169) Coenzyme A Biosynthesis
fig|6666666.148647.peg.2073 CDS NC_010729.1 2330607 2328991 -3 - 1617 ABC transporter, ATP-binding protein - none -
fig|6666666.148647.peg.2074 CDS NC_010729.1 2331900 2330881 -3 - 1020 FIG00936097: hypothetical protein - none -
fig|6666666.148647.peg.2075 CDS NC_010729.1 2332404 2332150 -3 - 255 Transglycosylase-associated protein - none -
fig|6666666.148647.peg.2076 CDS NC_010729.1 2335289 2332428 -2 - 2862 Excinuclease ABC subunit A paralog in greater Bacteroides group DNA repair, UvrABC system
fig|6666666.148647.peg.2077 CDS NC_010729.1 2335266 2335394 3 + 129 hypothetical protein - none -
fig|6666666.148647.peg.2078 CDS NC_010729.1 2336510 2336328 -2 - 183 nitrite reductase-related protein - none -
fig|6666666.148647.peg.2079 CDS NC_010729.1 2338054 2336702 -1 - 1353 FIG00936138: hypothetical protein - none -
fig|6666666.148647.peg.2080 CDS NC_010729.1 2339174 2338089 -2 - 1086 Mannose-1-phosphate guanylyltransferase (GDP) (EC 2.7.7.22) Mannose Metabolism
fig|6666666.148647.peg.2081 CDS NC_010729.1 2339636 2340979 2 + 1344 FIG00936576: hypothetical protein - none -
fig|6666666.148647.peg.2082 CDS NC_010729.1 2341152 2343056 3 + 1905 1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis;
Pyridoxin (Vitamin B6) Biosynthesis;
Thiamin biosynthesis
fig|6666666.148647.peg.2083 CDS NC_010729.1 2343110 2344450 2 + 1341 Trk system potassium uptake protein TrkA Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Hyperosmotic potassium uptake;
Potassium homeostasis;
Potassium homeostasis
fig|6666666.148647.peg.2084 CDS NC_010729.1 2344477 2345940 1 + 1464 Potassium uptake protein TrkH Hyperosmotic potassium uptake;
Potassium homeostasis;
Potassium homeostasis;
Transport system clustering with HemG
fig|6666666.148647.peg.2085 CDS NC_010729.1 2346590 2346742 2 + 153 Mobile element protein - none -
fig|6666666.148647.peg.2086 CDS NC_010729.1 2346967 2348310 1 + 1344 tRNA-t(6)A37 methylthiotransferase Heat shock dnaK gene cluster extended;
Methylthiotransferases
fig|6666666.148647.peg.2087 CDS NC_010729.1 2348307 2349224 3 + 918 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) KDO2-Lipid A biosynthesis
fig|6666666.148647.peg.2088 CDS NC_010729.1 2349263 2350231 2 + 969 Glycosyltransferase - none -
fig|6666666.148647.peg.2089 CDS NC_010729.1 2350373 2350969 2 + 597 FIG00936093: hypothetical protein - none -
fig|6666666.148647.peg.2090 CDS NC_010729.1 2351004 2351258 3 + 255 FIG00935478: hypothetical protein - none -
fig|6666666.148647.peg.2091 CDS NC_010729.1 2351338 2353560 1 + 2223 FIG00935975: hypothetical protein - none -
fig|6666666.148647.peg.2092 CDS NC_010729.1 2353557 2354213 3 + 657 FIG00935981: hypothetical protein - none -
fig|6666666.148647.rna.1 RNA NC_010729.1 6677 6604 -2 - 74 tRNA-Asn-GTT - none -
fig|6666666.148647.rna.2 RNA NC_010729.1 6773 6700 -2 - 74 tRNA-Asn-GTT - none -
fig|6666666.148647.rna.3 RNA NC_010729.1 32732 32802 2 + 71 tRNA-Gln-TTG - none -
fig|6666666.148647.rna.4 RNA NC_010729.1 115544 115470 -2 - 75 tRNA-Val-TAC - none -
fig|6666666.148647.rna.5 RNA NC_010729.1 115661 115587 -2 - 75 tRNA-Val-TAC - none -
fig|6666666.148647.rna.6 RNA NC_010729.1 123463 123392 -1 - 72 tRNA-Met-CAT - none -
fig|6666666.148647.rna.7 RNA NC_010729.1 168503 168576 2 + 74 tRNA-Met-CAT - none -
fig|6666666.148647.rna.8 RNA NC_010729.1 212909 212981 2 + 73 tRNA-Pro-CGG tRNAs
fig|6666666.148647.rna.9 RNA NC_010729.1 229311 230785 3 + 1475 Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA - none -
fig|6666666.148647.rna.10 RNA NC_010729.1 231348 231421 3 + 74 tRNA-Ile-GAT - none -
fig|6666666.148647.rna.11 RNA NC_010729.1 231423 231496 3 + 74 tRNA-Ala-TGC - none -
fig|6666666.148647.rna.12 RNA NC_010729.1 231614 234452 2 + 2839 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA - none -
fig|6666666.148647.rna.13 RNA NC_010729.1 234596 234706 2 + 111 5S RNA - none -
fig|6666666.148647.rna.14 RNA NC_010729.1 425569 425498 -1 - 72 tRNA-Glu-TTC - none -
fig|6666666.148647.rna.15 RNA NC_010729.1 425989 425918 -1 - 72 tRNA-Glu-TTC - none -
fig|6666666.148647.rna.16 RNA NC_010729.1 477275 478749 2 + 1475 Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA - none -
fig|6666666.148647.rna.17 RNA NC_010729.1 479312 479385 2 + 74 tRNA-Ile-GAT - none -
fig|6666666.148647.rna.18 RNA NC_010729.1 479387 479460 2 + 74 tRNA-Ala-TGC - none -
fig|6666666.148647.rna.19 RNA NC_010729.1 479578 482416 1 + 2839 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA - none -
fig|6666666.148647.rna.20 RNA NC_010729.1 482560 482670 1 + 111 5S RNA - none -
fig|6666666.148647.rna.21 RNA NC_010729.1 570985 570914 -1 - 72 tRNA-His-GTG - none -
fig|6666666.148647.rna.22 RNA NC_010729.1 614304 614231 -3 - 74 tRNA-Arg-TCT - none -
fig|6666666.148647.rna.23 RNA NC_010729.1 626045 626129 2 + 85 tRNA-Ser-TGA - none -
fig|6666666.148647.rna.24 RNA NC_010729.1 750737 750654 -2 - 84 tRNA-Leu-CAA tRNAs
fig|6666666.148647.rna.25 RNA NC_010729.1 846417 846344 -3 - 74 tRNA-Arg-CCG tRNAs
fig|6666666.148647.rna.26 RNA NC_010729.1 879184 879258 1 + 75 tRNA-Pro-TGG - none -
fig|6666666.148647.rna.27 RNA NC_010729.1 886658 886571 -2 - 88 tRNA-Ser-GGA tRNAs
fig|6666666.148647.rna.28 RNA NC_010729.1 905960 905888 -2 - 73 tRNA-Gly-CCC tRNAs
fig|6666666.148647.rna.29 RNA NC_010729.1 933331 933404 1 + 74 tRNA-Asp-GTC - none -
fig|6666666.148647.rna.30 RNA NC_010729.1 1082755 1082683 -1 - 73 tRNA-Phe-GAA tRNAs
fig|6666666.148647.rna.31 RNA NC_010729.1 1093832 1093751 -2 - 82 tRNA-Leu-TAG - none -
fig|6666666.148647.rna.32 RNA NC_010729.1 1142632 1142705 1 + 74 tRNA-Ala-GGC tRNAs
fig|6666666.148647.rna.33 RNA NC_010729.1 1164116 1164043 -2 - 74 tRNA-Met-CAT - none -
fig|6666666.148647.rna.34 RNA NC_010729.1 1229586 1229657 3 + 72 tRNA-Arg-CCT - none -
fig|6666666.148647.rna.35 RNA NC_010729.1 1330581 1330508 -3 - 74 tRNA-Arg-ACG tRNAs
fig|6666666.148647.rna.36 RNA NC_010729.1 1330690 1330617 -1 - 74 tRNA-Arg-ACG tRNAs
fig|6666666.148647.rna.37 RNA NC_010729.1 1376103 1376175 3 + 73 tRNA-Thr-CGT - none -
fig|6666666.148647.rna.38 RNA NC_010729.1 1448631 1448558 -3 - 74 tRNA-Thr-TGT - none -
fig|6666666.148647.rna.39 RNA NC_010729.1 1530170 1530100 -2 - 71 tRNA-Gln-CTG - none -
fig|6666666.148647.rna.40 RNA NC_010729.1 1539045 1539119 3 + 75 tRNA-Pro-GGG tRNAs
fig|6666666.148647.rna.41 RNA NC_010729.1 1555073 1554963 -2 - 111 5S RNA - none -
fig|6666666.148647.rna.42 RNA NC_010729.1 1558055 1555217 -2 - 2839 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA - none -
fig|6666666.148647.rna.43 RNA NC_010729.1 1558246 1558173 -1 - 74 tRNA-Ala-TGC - none -
fig|6666666.148647.rna.44 RNA NC_010729.1 1558321 1558248 -1 - 74 tRNA-Ile-GAT - none -
fig|6666666.148647.rna.45 RNA NC_010729.1 1560358 1558884 -1 - 1475 Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA - none -
fig|6666666.148647.rna.46 RNA NC_010729.1 1604770 1604698 -1 - 73 tRNA-Gly-GCC tRNAs
fig|6666666.148647.rna.47 RNA NC_010729.1 1604903 1604819 -2 - 85 tRNA-Leu-TAA - none -
fig|6666666.148647.rna.48 RNA NC_010729.1 1604992 1604920 -1 - 73 tRNA-Gly-TCC - none -
fig|6666666.148647.rna.49 RNA NC_010729.1 1605108 1605026 -3 - 83 tRNA-Tyr-GTA - none -
fig|6666666.148647.rna.50 RNA NC_010729.1 1625476 1625562 1 + 87 tRNA-Pseudo-GCT - none -
fig|6666666.148647.rna.51 RNA NC_010729.1 1768436 1768364 -2 - 73 tRNA-Trp-CCA tRNAs
fig|6666666.148647.rna.52 RNA NC_010729.1 1769833 1769762 -1 - 72 tRNA-Thr-GGT - none -
fig|6666666.148647.rna.53 RNA NC_010729.1 1769948 1769866 -2 - 83 tRNA-Tyr-GTA - none -
fig|6666666.148647.rna.54 RNA NC_010729.1 1957668 1957740 3 + 73 tRNA-Lys-TTT - none -
fig|6666666.148647.rna.55 RNA NC_010729.1 2203856 2203783 -2 - 74 tRNA-Asp-GTC - none -
fig|6666666.148647.rna.56 RNA NC_010729.1 2238752 2238680 -2 - 73 tRNA-Lys-CTT - none -
fig|6666666.148647.rna.57 RNA NC_010729.1 2295553 2297027 1 + 1475 Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA - none -
fig|6666666.148647.rna.58 RNA NC_010729.1 2297590 2297663 1 + 74 tRNA-Ile-GAT - none -
fig|6666666.148647.rna.59 RNA NC_010729.1 2297665 2297738 1 + 74 tRNA-Ala-TGC - none -
fig|6666666.148647.rna.60 RNA NC_010729.1 2297856 2300694 3 + 2839 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA - none -
fig|6666666.148647.rna.61 RNA NC_010729.1 2300838 2300948 3 + 111 5S RNA - none -
fig|6666666.148647.rna.62 RNA NC_010729.1 2335497 2335414 -3 - 84 tRNA-Leu-GAG tRNAs
fig|6666666.148647.rna.63 RNA NC_010729.1 2335614 2335532 -3 - 83 tRNA-Leu-CAG tRNAs
fig|6666666.148647.rna.64 RNA NC_010729.1 2335777 2335705 -1 - 73 tRNA-Gly-GCC tRNAs
fig|6666666.148647.rna.65 RNA NC_010729.1 2346202 2346132 -1 - 71 tRNA-Cys-GCA tRNAs