Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin	Biotin biosynthesis	Transmembrane component BioN of energizing module of biotin ECF transporter	fig|6666666.229861.peg.2097
Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin	Biotin biosynthesis	Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	fig|6666666.229861.peg.1462, <br>fig|6666666.229861.peg.2189
Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin	Biotin biosynthesis	predicted biotin regulatory protein BioR (GntR family)	fig|6666666.229861.peg.602
Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin	Biotin biosynthesis	Substrate-specific component BioY of biotin ECF transporter	fig|6666666.229861.peg.2099
Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin	Biotin biosynthesis	Biotin operon repressor	fig|6666666.229861.peg.515
Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin	Biotin biosynthesis	Biotin-protein ligase (EC 6.3.4.15)	fig|6666666.229861.peg.515
Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin	Biotin biosynthesis	ATPase component BioM of energizing module of biotin ECF transporter	fig|6666666.229861.peg.425, <br>fig|6666666.229861.peg.1784, <br>fig|6666666.229861.peg.2098
Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin	Biotin biosynthesis Experimental	Competence protein F homolog, phosphoribosyltransferase domain	fig|6666666.229861.peg.1492
Cofactors, Vitamins, Prosthetic Groups, Pigments	Cofactors, Vitamins, Prosthetic Groups, Pigments - no subcategory	Thiamin biosynthesis	tRNA S(4)U 4-thiouridine synthase (former ThiI)	fig|6666666.229861.peg.248
Cofactors, Vitamins, Prosthetic Groups, Pigments	Cofactors, Vitamins, Prosthetic Groups, Pigments - no subcategory	Thiamin biosynthesis	Thiamin ABC transporter, substrate-binding component	fig|6666666.229861.peg.610
Cofactors, Vitamins, Prosthetic Groups, Pigments	Cofactors, Vitamins, Prosthetic Groups, Pigments - no subcategory	Thiamin biosynthesis	Thiamin ABC transporter, ATPase component	fig|6666666.229861.peg.612
Cofactors, Vitamins, Prosthetic Groups, Pigments	Cofactors, Vitamins, Prosthetic Groups, Pigments - no subcategory	Thiamin biosynthesis	Thiamin ABC transporter, transmembrane component	fig|6666666.229861.peg.611, <br>fig|6666666.229861.peg.1407, <br>fig|6666666.229861.peg.1409
Cofactors, Vitamins, Prosthetic Groups, Pigments	Cofactors, Vitamins, Prosthetic Groups, Pigments - no subcategory	Thiamin biosynthesis	1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7)	fig|6666666.229861.peg.1105
Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles	Cobalamin synthesis	Cobalt-precorrin-6x reductase (EC 1.3.1.54)	fig|6666666.229861.peg.1162
Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles	Cobalamin synthesis	L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81)	fig|6666666.229861.peg.360
Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles	Cobalamin synthesis	Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)	fig|6666666.229861.peg.79
Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles	Cobalamin synthesis	Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)	fig|6666666.229861.peg.238
Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles	Cobalamin synthesis	Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)	fig|6666666.229861.peg.330
Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles	Cobalamin synthesis	Cobyric acid synthase (EC 6.3.5.10)	fig|6666666.229861.peg.25
Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles	Cobalamin synthesis	Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133)	fig|6666666.229861.peg.1155
Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles	Cobalamin synthesis	Cobalt-precorrin-3b C17-methyltransferase	fig|6666666.229861.peg.1161
Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles	Cobalamin synthesis	Cobalamin biosynthesis protein CbiG	fig|6666666.229861.peg.1156, <br>fig|6666666.229861.peg.1665, <br>fig|6666666.229861.peg.2259
Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles	Cobalamin synthesis	Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)	fig|6666666.229861.peg.1396
Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles	Cobalamin synthesis	Adenosylcobinamide-phosphate synthase (EC 6.3.1.10)	fig|6666666.229861.peg.86
Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles	Cobalamin synthesis	Cob(I)alamin adenosyltransferase (EC 2.5.1.17)	fig|6666666.229861.peg.725
Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles	Cobalamin synthesis	Alpha-ribazole-5@1-phosphate phosphatase (EC 3.1.3.73)	fig|6666666.229861.peg.81
Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles	Cobalamin synthesis	Cobalt-precorrin-6 synthase, anaerobic	fig|6666666.229861.peg.2038
Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles	Cobalamin synthesis	Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3)	fig|6666666.229861.peg.329
Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles	Cobalamin synthesis	Cobyrinic acid A,C-diamide synthase	fig|6666666.229861.peg.331
Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD	Riboflavin, FMN and FAD metabolism in plants	FMN adenylyltransferase (EC 2.7.7.2)	fig|6666666.229861.peg.1551
Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD	Riboflavin, FMN and FAD metabolism in plants	FIG000859: hypothetical protein YebC	fig|6666666.229861.peg.1954
Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD	Riboflavin, FMN and FAD metabolism in plants	Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps	fig|6666666.229861.peg.805, <br>fig|6666666.229861.peg.840, <br>fig|6666666.229861.peg.858, <br>fig|6666666.229861.peg.1158, <br>fig|6666666.229861.peg.1335, <br>fig|6666666.229861.peg.1336, <br>fig|6666666.229861.peg.1567, <br>fig|6666666.229861.peg.2051
Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD	Riboflavin, FMN and FAD metabolism in plants	tRNA pseudouridine synthase B (EC 4.2.1.70)	fig|6666666.229861.peg.1615
Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD	Riboflavin, FMN and FAD metabolism in plants	Riboflavin kinase (EC 2.7.1.26)	fig|6666666.229861.peg.1551
Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD	riboflavin to FAD	FMN adenylyltransferase (EC 2.7.7.2)	fig|6666666.229861.peg.1551
Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD	riboflavin to FAD	Riboflavin kinase (EC 2.7.1.26)	fig|6666666.229861.peg.1551
Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD	Flavodoxin	Flavodoxin	fig|6666666.229861.peg.630, <br>fig|6666666.229861.peg.780, <br>fig|6666666.229861.peg.868, <br>fig|6666666.229861.peg.870, <br>fig|6666666.229861.peg.1647
Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD	Riboflavin, FMN and FAD metabolism	FMN adenylyltransferase (EC 2.7.7.2)	fig|6666666.229861.peg.1551
Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD	Riboflavin, FMN and FAD metabolism	Riboflavin kinase (EC 2.7.1.26)	fig|6666666.229861.peg.1551
Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP	NAD and NADP cofactor biosynthesis global	Nicotinate phosphoribosyltransferase (EC 2.4.2.11)	fig|6666666.229861.peg.641
Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP	NAD and NADP cofactor biosynthesis global	NAD kinase (EC 2.7.1.23)	fig|6666666.229861.peg.2034
Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP	NAD and NADP cofactor biosynthesis global	Glutamine amidotransferase chain of NAD synthetase	fig|6666666.229861.peg.1864
Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP	NAD and NADP cofactor biosynthesis global	ADP-ribose pyrophosphatase (EC 3.6.1.13)	fig|6666666.229861.peg.484
Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP	NAD and NADP cofactor biosynthesis global	Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18)	fig|6666666.229861.peg.2194
Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP	NAD and NADP cofactor biosynthesis global	NAD synthetase (EC 6.3.1.5)	fig|6666666.229861.peg.1864
Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines	Folate biosynthesis cluster	Cell division protein FtsH (EC 3.4.24.-)	fig|6666666.229861.peg.965, <br>fig|6666666.229861.peg.1798
Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines	Folate biosynthesis cluster	tRNA(Ile)-lysidine synthetase (EC 6.3.4.19)	fig|6666666.229861.peg.1810
Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines	Folate biosynthesis cluster	Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8)	fig|6666666.229861.peg.2002
Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines	Folate Biosynthesis	Dihydrofolate synthase (EC 6.3.2.12)	fig|6666666.229861.peg.1594
Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines	Folate Biosynthesis	Folylpolyglutamate synthase (EC 6.3.2.17)	fig|6666666.229861.peg.1594
Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines	Folate Biosynthesis	5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2)	fig|6666666.229861.peg.1506
Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines	Folate Biosynthesis	Thymidylate synthase thyX (EC 2.1.1.-)	fig|6666666.229861.peg.822
Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines	Folate Biosynthesis	Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85)	fig|6666666.229861.peg.942
Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines	5-FCL-like protein	Alcohol dehydrogenase (EC 1.1.1.1)	fig|6666666.229861.peg.524
Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines	5-FCL-like protein	Formate--tetrahydrofolate ligase (EC 6.3.4.3)	fig|6666666.229861.peg.493
Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines	5-FCL-like protein	5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2)	fig|6666666.229861.peg.1506
Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines	5-FCL-like protein	Serine hydroxymethyltransferase (EC 2.1.2.1)	fig|6666666.229861.peg.339
Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines	5-FCL-like protein	Methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5)	fig|6666666.229861.peg.487
Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines	5-FCL-like protein	Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2)	fig|6666666.229861.peg.1096
Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines	5-FCL-like protein	Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)	fig|6666666.229861.peg.1095
Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines	5-FCL-like protein	Formiminotetrahydrofolate cyclodeaminase (EC 4.3.1.4)	fig|6666666.229861.peg.519
Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines	5-FCL-like protein	Glutamate formiminotransferase (EC 2.1.2.5)	fig|6666666.229861.peg.808
Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines	5-FCL-like protein	Dihydrolipoamide dehydrogenase (EC 1.8.1.4)	fig|6666666.229861.peg.2077
Cofactors, Vitamins, Prosthetic Groups, Pigments	Lipoic acid	Lipoic acid metabolism	Lipoate-protein ligase A	fig|6666666.229861.peg.321, <br>fig|6666666.229861.peg.2008
Cofactors, Vitamins, Prosthetic Groups, Pigments	Lipoic acid	Lipoic acid metabolism	Lipoate synthase	fig|6666666.229861.peg.2018
Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A	Coenzyme A Biosynthesis	2-dehydropantoate 2-reductase (EC 1.1.1.169)	fig|6666666.229861.peg.862
Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A	Coenzyme A Biosynthesis	Phosphopantetheine adenylyltransferase (EC 2.7.7.3)	fig|6666666.229861.peg.1839
Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A	Coenzyme A Biosynthesis	Dephospho-CoA kinase (EC 2.7.1.24)	fig|6666666.229861.peg.2088
Cell Wall and Capsule	Capsular and extracellular polysacchrides	dTDP-rhamnose synthesis	dTDP-glucose 4,6-dehydratase (EC 4.2.1.46)	fig|6666666.229861.peg.1906
Cell Wall and Capsule	Capsular and extracellular polysacchrides	dTDP-rhamnose synthesis	Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24)	fig|6666666.229861.peg.1905
Cell Wall and Capsule	Capsular and extracellular polysacchrides	Rhamnose containing glycans	UDP-glucose 4-epimerase (EC 5.1.3.2)	fig|6666666.229861.peg.1904, <br>fig|6666666.229861.peg.2200
Cell Wall and Capsule	Capsular and extracellular polysacchrides	Rhamnose containing glycans	capsular polysaccharide biosynthesis protein	fig|6666666.229861.peg.1259
Cell Wall and Capsule	Capsular and extracellular polysacchrides	Rhamnose containing glycans	Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40)	fig|6666666.229861.peg.1881
Cell Wall and Capsule	Capsular and extracellular polysacchrides	Rhamnose containing glycans	dTDP-glucose 4,6-dehydratase (EC 4.2.1.46)	fig|6666666.229861.peg.1906
Cell Wall and Capsule	Capsular and extracellular polysacchrides	Rhamnose containing glycans	Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24)	fig|6666666.229861.peg.1905
Cell Wall and Capsule	Gram-Negative cell wall components	Peptidoglycan lipid II flippase	Proposed peptidoglycan lipid II flippase MurJ	fig|6666666.229861.peg.851
Cell Wall and Capsule	Gram-Negative cell wall components	Lipoprotein sorting system	Lipoprotein releasing system transmembrane protein LolC	fig|6666666.229861.peg.2352
Cell Wall and Capsule	Gram-Negative cell wall components	Lipoprotein sorting system	Lipoprotein releasing system ATP-binding protein LolD	fig|6666666.229861.peg.2351
Cell Wall and Capsule	Gram-Negative cell wall components	Lipoprotein sorting system	Lipoprotein releasing system transmembrane protein LolE	fig|6666666.229861.peg.2350
Cell Wall and Capsule	Cell Wall and Capsule - no subcategory	Murein Hydrolases	Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-)	fig|6666666.229861.peg.2456
Cell Wall and Capsule	Cell Wall and Capsule - no subcategory	Murein Hydrolases	N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28)	fig|6666666.229861.peg.990, <br>fig|6666666.229861.peg.2161
Cell Wall and Capsule	Cell Wall and Capsule - no subcategory	Murein Hydrolases	D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4)	fig|6666666.229861.peg.1175, <br>fig|6666666.229861.peg.1494
Cell Wall and Capsule	Cell Wall and Capsule - no subcategory	Murein Hydrolases	Soluble lytic murein transglycosylase precursor (EC 3.2.1.-)	fig|6666666.229861.peg.2561
Cell Wall and Capsule	Cell Wall and Capsule - no subcategory	Peptidoglycan Biosynthesis	D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4)	fig|6666666.229861.peg.1175, <br>fig|6666666.229861.peg.1494
Cell Wall and Capsule	Cell Wall and Capsule - no subcategory	Peptidoglycan Biosynthesis	Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129)	fig|6666666.229861.peg.1786
Cell Wall and Capsule	Cell Wall and Capsule - no subcategory	Peptidoglycan Biosynthesis	UDP-N-acetylenolpyruvoylglucosamine reductase (EC 1.1.1.158)	fig|6666666.229861.peg.558
Cell Wall and Capsule	Cell Wall and Capsule - no subcategory	Peptidoglycan Biosynthesis	Penicillin-insensitive transglycosylase (EC 2.4.2.-) & transpeptidase PBP-1C	fig|6666666.229861.peg.2450
Cell Wall and Capsule	Cell Wall and Capsule - no subcategory	Peptidoglycan Biosynthesis	Rare lipoprotein A precursor	fig|6666666.229861.peg.2342
Cell Wall and Capsule	Cell Wall and Capsule - no subcategory	Peptidoglycan Biosynthesis	UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7)	fig|6666666.229861.peg.1183
Cell Wall and Capsule	Cell Wall and Capsule - no subcategory	Peptidoglycan Biosynthesis	UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC 6.3.2.9)	fig|6666666.229861.peg.882
Cell Wall and Capsule	Cell Wall and Capsule - no subcategory	Peptidoglycan Biosynthesis	UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227)	fig|6666666.229861.peg.2287
Cell Wall and Capsule	Cell Wall and Capsule - no subcategory	Peptidoglycan Biosynthesis	Rod shape-determining protein RodA	fig|6666666.229861.peg.1822
Cell Wall and Capsule	Cell Wall and Capsule - no subcategory	Peptidoglycan Biosynthesis	Glutamate racemase (EC 5.1.1.3)	fig|6666666.229861.peg.1913
Cell Wall and Capsule	Cell Wall and Capsule - no subcategory	Peptidoglycan Biosynthesis	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase (EC 6.3.2.10)	fig|6666666.229861.peg.1671
Cell Wall and Capsule	Cell Wall and Capsule - no subcategory	Peptidoglycan Biosynthesis	UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8)	fig|6666666.229861.peg.1595
Cell Wall and Capsule	Cell Wall and Capsule - no subcategory	Peptidoglycan Biosynthesis	Penicillin-binding protein 2 (PBP-2)	fig|6666666.229861.peg.1821
Cell Wall and Capsule	Cell Wall and Capsule - no subcategory	Peptidoglycan Biosynthesis	Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC 2.7.8.13)	fig|6666666.229861.peg.2544
Cell Wall and Capsule	Cell Wall and Capsule - no subcategory	Peptidoglycan Biosynthesis	D-alanine--D-alanine ligase (EC 6.3.2.4)	fig|6666666.229861.peg.82
Cell Wall and Capsule	Cell Wall and Capsule - no subcategory	Peptidoglycan Biosynthesis	Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-)	fig|6666666.229861.peg.2188
Cell Wall and Capsule	Cell Wall and Capsule - no subcategory	UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis	UDP-N-acetylenolpyruvoylglucosamine reductase (EC 1.1.1.158)	fig|6666666.229861.peg.558
Cell Wall and Capsule	Cell Wall and Capsule - no subcategory	UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis	UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7)	fig|6666666.229861.peg.1183
Cell Wall and Capsule	Cell Wall and Capsule - no subcategory	UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis	Phosphoglucosamine mutase (EC 5.4.2.10)	fig|6666666.229861.peg.1382
Cell Wall and Capsule	Cell Wall and Capsule - no subcategory	tRNA-dependent amino acid transfers	tRNA-dependent lipid II--amino acid ligase	fig|6666666.229861.peg.2186
Cell Wall and Capsule	Cell Wall and Capsule - no subcategory	YjeE	TsaB protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA	fig|6666666.229861.peg.1937
Cell Wall and Capsule	Cell Wall and Capsule - no subcategory	YjeE	NAD(P)HX epimerase	fig|6666666.229861.peg.1835
Cell Wall and Capsule	Cell Wall and Capsule - no subcategory	YjeE	TsaE protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA	fig|6666666.229861.peg.1938
Cell Wall and Capsule	Cell Wall and Capsule - no subcategory	YjeE	NAD(P)HX dehydratase	fig|6666666.229861.peg.1835
Cell Wall and Capsule	Cell Wall and Capsule - no subcategory	Recycling of Peptidoglycan Amino Acids	N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28)	fig|6666666.229861.peg.990, <br>fig|6666666.229861.peg.2161
Cell Wall and Capsule	Cell Wall and Capsule - no subcategory	Recycling of Peptidoglycan Amino Acids	Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3)	fig|6666666.229861.peg.2522
Cell Wall and Capsule	Cell Wall and Capsule - no subcategory	Peptidoglycan biosynthesis--gjo	UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8)	fig|6666666.229861.peg.1595
Cell Wall and Capsule	Cell Wall and Capsule - no subcategory	Peptidoglycan biosynthesis--gjo	UDP-N-acetylmuramoylalanyl-D-glutamate--L-ornithine ligase	fig|6666666.229861.peg.1345
Cell Wall and Capsule	Cell Wall and Capsule - no subcategory	Peptidoglycan biosynthesis--gjo	UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC 6.3.2.9)	fig|6666666.229861.peg.882
Cell Wall and Capsule	Cell Wall and Capsule - no subcategory	Peptidoglycan biosynthesis--gjo	D-alanine--D-alanine ligase (EC 6.3.2.4)	fig|6666666.229861.peg.82
Cell Wall and Capsule	Cell Wall and Capsule - no subcategory	Peptidoglycan biosynthesis--gjo	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase (EC 6.3.2.10)	fig|6666666.229861.peg.1671
Cell Wall and Capsule	Gram-Positive cell wall components	Teichoic and lipoteichoic acids biosynthesis	Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40)	fig|6666666.229861.peg.1881
Cell Wall and Capsule	Gram-Positive cell wall components	Teichoic and lipoteichoic acids biosynthesis	N-acetylmannosaminyltransferase (EC 2.4.1.187)	fig|6666666.229861.peg.1076
Cell Wall and Capsule	Gram-Positive cell wall components	Teichoic and lipoteichoic acids biosynthesis	CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase (EC 2.7.8.12)	fig|6666666.229861.peg.1882
Cell Wall and Capsule	Gram-Positive cell wall components	Teichoic and lipoteichoic acids biosynthesis	Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-)	fig|6666666.229861.peg.341
Cell Wall and Capsule	Gram-Positive cell wall components	Teichoic and lipoteichoic acids biosynthesis	Teichoic acid translocation permease protein TagG	fig|6666666.229861.peg.1880
Cell Wall and Capsule	Gram-Positive cell wall components	Teichoic and lipoteichoic acids biosynthesis	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC 2.7.7.60)	fig|6666666.229861.peg.2572
Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides	Colicin V and Bacteriocin Production Cluster	Dihydrofolate synthase (EC 6.3.2.12)	fig|6666666.229861.peg.1594
Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides	Colicin V and Bacteriocin Production Cluster	Folylpolyglutamate synthase (EC 6.3.2.17)	fig|6666666.229861.peg.1594
Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides	Colicin V and Bacteriocin Production Cluster	Amidophosphoribosyltransferase (EC 2.4.2.14)	fig|6666666.229861.peg.101
Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides	Colicin V and Bacteriocin Production Cluster	Acetyl-coenzyme A carboxyl transferase beta chain (EC 6.4.1.2)	fig|6666666.229861.peg.1135
Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides	Colicin V and Bacteriocin Production Cluster	Colicin V production protein	fig|6666666.229861.peg.2286
Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides	Colicin V and Bacteriocin Production Cluster	tRNA pseudouridine synthase A (EC 4.2.1.70)	fig|6666666.229861.peg.2557
Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds	Copper homeostasis	Copper-translocating P-type ATPase (EC 3.6.3.4)	fig|6666666.229861.peg.481, <br>fig|6666666.229861.peg.968, <br>fig|6666666.229861.peg.1849
Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds	Bile hydrolysis	Choloylglycine hydrolase (EC 3.5.1.24)	fig|6666666.229861.peg.1000
Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds	Cobalt-zinc-cadmium resistance	Cobalt-zinc-cadmium resistance protein	fig|6666666.229861.peg.1176
Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds	Cobalt-zinc-cadmium resistance	Probable Co/Zn/Cd efflux system membrane fusion protein	fig|6666666.229861.peg.2565
Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds	Cobalt-zinc-cadmium resistance	Transcriptional regulator, MerR family	fig|6666666.229861.peg.547, <br>fig|6666666.229861.peg.2056
Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds	Zinc resistance	Response regulator of zinc sigma-54-dependent two-component system	fig|6666666.229861.peg.269, <br>fig|6666666.229861.peg.2283, <br>fig|6666666.229861.peg.2392
Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds	Aminoglycoside adenylyltransferases	Aminoglycoside N6@1-acetyltransferase (EC 2.3.1.82)	fig|6666666.229861.peg.2467
Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds	Copper homeostasis: copper tolerance	Cytoplasmic copper homeostasis protein CutC	fig|6666666.229861.peg.2538
Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds	Copper homeostasis: copper tolerance	Magnesium and cobalt efflux protein CorC	fig|6666666.229861.peg.828, <br>fig|6666666.229861.peg.829, <br>fig|6666666.229861.peg.1711
Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds	Resistance to fluoroquinolones	DNA gyrase subunit B (EC 5.99.1.3)	fig|6666666.229861.peg.475
Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds	Resistance to fluoroquinolones	DNA gyrase subunit A (EC 5.99.1.3)	fig|6666666.229861.peg.807
Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds	Resistance to fluoroquinolones	Topoisomerase IV subunit B (EC 5.99.1.-)	fig|6666666.229861.peg.2540
Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds	Resistance to fluoroquinolones	Topoisomerase IV subunit A (EC 5.99.1.-)	fig|6666666.229861.peg.2427
Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds	Beta-lactamase	Beta-lactamase class C and other penicillin binding proteins	fig|6666666.229861.peg.2406
Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds	Beta-lactamase	Metal-dependent hydrolases of the beta-lactamase superfamily I	fig|6666666.229861.peg.1998
Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds	Cadmium resistance	Cadmium efflux system accessory protein	fig|6666666.229861.peg.1847
Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds	Multidrug Resistance Efflux Pumps	Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps	fig|6666666.229861.peg.805, <br>fig|6666666.229861.peg.840, <br>fig|6666666.229861.peg.858, <br>fig|6666666.229861.peg.1158, <br>fig|6666666.229861.peg.1335, <br>fig|6666666.229861.peg.1336, <br>fig|6666666.229861.peg.1567, <br>fig|6666666.229861.peg.2051
Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds	Multidrug Resistance Efflux Pumps	Multidrug and toxin extrusion (MATE) family efflux pump YdhE/NorM, homolog	fig|6666666.229861.peg.166, <br>fig|6666666.229861.peg.383
Virulence, Disease and Defense	Invasion and intracellular resistance	Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins)	SSU ribosomal protein S7p (S5e)	fig|6666666.229861.peg.1560
Virulence, Disease and Defense	Invasion and intracellular resistance	Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins)	Translation elongation factor G	fig|6666666.229861.peg.799, <br>fig|6666666.229861.peg.1561
Virulence, Disease and Defense	Invasion and intracellular resistance	Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins)	Translation elongation factor Tu	fig|6666666.229861.peg.1289
Virulence, Disease and Defense	Invasion and intracellular resistance	Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins)	SSU ribosomal protein S12p (S23e)	fig|6666666.229861.peg.1559
Virulence, Disease and Defense	Invasion and intracellular resistance	Mycobacterium virulence operon involved in an unknown function with a Jag Protein and YidC and YidD	Inner membrane protein translocase component YidC, long form	fig|6666666.229861.peg.91, <br>fig|6666666.229861.peg.1901
Virulence, Disease and Defense	Invasion and intracellular resistance	Mycobacterium virulence operon involved in an unknown function with a Jag Protein and YidC and YidD	RNA-binding protein Jag	fig|6666666.229861.peg.90
Virulence, Disease and Defense	Invasion and intracellular resistance	Mycobacterium virulence operon involved in an unknown function with a Jag Protein and YidC and YidD	Protein YidD	fig|6666666.229861.peg.92
Virulence, Disease and Defense	Invasion and intracellular resistance	Mycobacterium virulence operon involved in DNA transcription	DNA-directed RNA polymerase beta@1 subunit (EC 2.7.7.6)	fig|6666666.229861.peg.113
Virulence, Disease and Defense	Invasion and intracellular resistance	Mycobacterium virulence operon involved in DNA transcription	DNA-directed RNA polymerase beta subunit (EC 2.7.7.6)	fig|6666666.229861.peg.114
Virulence, Disease and Defense	Invasion and intracellular resistance	Mycobacterium virulence operon involved in protein synthesis (LSU ribosomal proteins)	LSU ribosomal protein L35p	fig|6666666.229861.peg.2462
Virulence, Disease and Defense	Invasion and intracellular resistance	Mycobacterium virulence operon involved in protein synthesis (LSU ribosomal proteins)	Translation initiation factor 3	fig|6666666.229861.peg.2463
Virulence, Disease and Defense	Invasion and intracellular resistance	Mycobacterium virulence operon involved in protein synthesis (LSU ribosomal proteins)	LSU ribosomal protein L20p	fig|6666666.229861.peg.2461
Potassium metabolism	Potassium metabolism - no subcategory	Potassium homeostasis	FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8)	fig|6666666.229861.peg.1117
Potassium metabolism	Potassium metabolism - no subcategory	Potassium homeostasis	Trk system potassium uptake protein TrkA	fig|6666666.229861.peg.552, <br>fig|6666666.229861.peg.806, <br>fig|6666666.229861.peg.824, <br>fig|6666666.229861.peg.552, <br>fig|6666666.229861.peg.806, <br>fig|6666666.229861.peg.824
Potassium metabolism	Potassium metabolism - no subcategory	Potassium homeostasis	Potassium efflux system KefA protein	fig|6666666.229861.peg.2576
Potassium metabolism	Potassium metabolism - no subcategory	Potassium homeostasis	Potassium uptake protein TrkH	fig|6666666.229861.peg.553, <br>fig|6666666.229861.peg.823, <br>fig|6666666.229861.peg.553, <br>fig|6666666.229861.peg.823
Potassium metabolism	Potassium metabolism - no subcategory	Potassium homeostasis	Kef-type K+ transport systems (NAD-binding component fused to domain related to exopolyphosphatase)	fig|6666666.229861.peg.501
Potassium metabolism	Potassium metabolism - no subcategory	Potassium homeostasis	FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8)	fig|6666666.229861.peg.2568
Potassium metabolism	Potassium metabolism - no subcategory	Potassium homeostasis	Glutathione-regulated potassium-efflux system ancillary protein KefG	fig|6666666.229861.peg.863
Potassium metabolism	Potassium metabolism - no subcategory	Hyperosmotic potassium uptake	Trk system potassium uptake protein TrkA	fig|6666666.229861.peg.552, <br>fig|6666666.229861.peg.806, <br>fig|6666666.229861.peg.824
Potassium metabolism	Potassium metabolism - no subcategory	Hyperosmotic potassium uptake	Potassium uptake protein TrkH	fig|6666666.229861.peg.553, <br>fig|6666666.229861.peg.823
Miscellaneous	Miscellaneous - no subcategory	Phosphoglycerate mutase protein family	Alpha-ribazole-5@1-phosphate phosphatase (EC 3.1.3.73)	fig|6666666.229861.peg.81
Miscellaneous	Miscellaneous - no subcategory	Phosphoglycerate mutase protein family	Phosphoglycerate mutase (EC 5.4.2.1)	fig|6666666.229861.peg.281, <br>fig|6666666.229861.peg.2144
Miscellaneous	Miscellaneous - no subcategory	Phosphoglycerate mutase protein family	Carboxyl-terminal protease (EC 3.4.21.102)	fig|6666666.229861.peg.1078
Miscellaneous	Miscellaneous - no subcategory	Phosphoglycerate mutase protein family	Putative periplasmic protein YibQ, distant homology with nucleoside diphosphatase and polysaccharide deacetylase	fig|6666666.229861.peg.191
Miscellaneous	Miscellaneous - no subcategory	Muconate lactonizing enzyme family	L(+)-tartrate dehydratase beta subunit (EC 4.2.1.32)	fig|6666666.229861.peg.1987
Miscellaneous	Miscellaneous - no subcategory	Muconate lactonizing enzyme family	L(+)-tartrate dehydratase alpha subunit (EC 4.2.1.32)	fig|6666666.229861.peg.1986
Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages	Phage tail proteins	Phage tail length tape-measure protein	fig|6666666.229861.peg.714
Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages	Phage replication	DNA transposition protein	fig|6666666.229861.peg.690
Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages	Phage replication	DNA polymerase III alpha subunit (EC 2.7.7.7)	fig|6666666.229861.peg.471
Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages	Phage tail proteins 2	Phage tail length tape-measure protein	fig|6666666.229861.peg.714
Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages, Transposable elements, Plasmids - no subcategory	Integrons	Integron integrase IntIPac	fig|6666666.229861.peg.7, <br>fig|6666666.229861.peg.8
Membrane Transport	ABC transporters	ABC transporter alkylphosphonate (TC 3.A.1.9.1)	Phosphonate ABC transporter permease protein phnE2 (TC 3.A.1.9.1)	fig|6666666.229861.peg.1449
Membrane Transport	ABC transporters	ABC transporter alkylphosphonate (TC 3.A.1.9.1)	Phosphonate ABC transporter ATP-binding protein (TC 3.A.1.9.1)	fig|6666666.229861.peg.1450
Membrane Transport	ABC transporters	ABC transporter alkylphosphonate (TC 3.A.1.9.1)	Phosphonate ABC transporter permease protein phnE1 (TC 3.A.1.9.1)	fig|6666666.229861.peg.1448
Membrane Transport	ABC transporters	ABC transporter alkylphosphonate (TC 3.A.1.9.1)	Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1)	fig|6666666.229861.peg.1823
Membrane Transport	ABC transporters	ABC transporter oligopeptide (TC 3.A.1.5.1)	Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1)	fig|6666666.229861.peg.1180, <br>fig|6666666.229861.peg.1578
Membrane Transport	ABC transporters	ABC transporter oligopeptide (TC 3.A.1.5.1)	Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)	fig|6666666.229861.peg.1181, <br>fig|6666666.229861.peg.1499, <br>fig|6666666.229861.peg.1502, <br>fig|6666666.229861.peg.1577, <br>fig|6666666.229861.peg.1579, <br>fig|6666666.229861.peg.1584, <br>fig|6666666.229861.peg.1744
Membrane Transport	ABC transporters	ABC transporter oligopeptide (TC 3.A.1.5.1)	Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1)	fig|6666666.229861.peg.903, <br>fig|6666666.229861.peg.1178, <br>fig|6666666.229861.peg.1503, <br>fig|6666666.229861.peg.1576, <br>fig|6666666.229861.peg.1740
Membrane Transport	ABC transporters	ABC transporter oligopeptide (TC 3.A.1.5.1)	Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1)	fig|6666666.229861.peg.1179, <br>fig|6666666.229861.peg.1741
Membrane Transport	ABC transporters	ABC transporter oligopeptide (TC 3.A.1.5.1)	Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)	fig|6666666.229861.peg.304, <br>fig|6666666.229861.peg.446, <br>fig|6666666.229861.peg.1580, <br>fig|6666666.229861.peg.1581, <br>fig|6666666.229861.peg.1742, <br>fig|6666666.229861.peg.2361
Membrane Transport	ABC transporters	ABC transporter branched-chain amino acid (TC 3.A.1.4.1)	High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1)	fig|6666666.229861.peg.64
Membrane Transport	ABC transporters	ABC transporter branched-chain amino acid (TC 3.A.1.4.1)	Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1)	fig|6666666.229861.peg.61
Membrane Transport	ABC transporters	ABC transporter branched-chain amino acid (TC 3.A.1.4.1)	Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)	fig|6666666.229861.peg.63, <br>fig|6666666.229861.peg.572
Membrane Transport	ABC transporters	ABC transporter branched-chain amino acid (TC 3.A.1.4.1)	Branched-chain amino acid ABC transporter, amino acid-binding protein (TC 3.A.1.4.1)	fig|6666666.229861.peg.59
Membrane Transport	ABC transporters	ABC transporter branched-chain amino acid (TC 3.A.1.4.1)	Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1)	fig|6666666.229861.peg.62
Membrane Transport	ABC transporters	ABC transporter dipeptide (TC 3.A.1.5.2)	Dipeptide transport system permease protein DppB (TC 3.A.1.5.2)	fig|6666666.229861.peg.305, <br>fig|6666666.229861.peg.900
Membrane Transport	ABC transporters	ABC transporter dipeptide (TC 3.A.1.5.2)	Dipeptide transport ATP-binding protein DppF (TC 3.A.1.5.2)	fig|6666666.229861.peg.1587
Membrane Transport	ABC transporters	ABC transporter dipeptide (TC 3.A.1.5.2)	Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2)	fig|6666666.229861.peg.307, <br>fig|6666666.229861.peg.902
Membrane Transport	ABC transporters	ABC transporter dipeptide (TC 3.A.1.5.2)	Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)	fig|6666666.229861.peg.306, <br>fig|6666666.229861.peg.1500, <br>fig|6666666.229861.peg.1743
Membrane Transport	Protein translocation across cytoplasmic membrane	Bacterial signal recognition particle (SRP)	Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1)	fig|6666666.229861.peg.2401
Membrane Transport	Protein translocation across cytoplasmic membrane	Bacterial signal recognition particle (SRP)	Signal recognition particle receptor protein FtsY (=alpha subunit) (TC 3.A.5.1.1)	fig|6666666.229861.peg.2354
Membrane Transport	Cation transporters	Magnesium transport	Mg(2+) transport ATPase protein C	fig|6666666.229861.peg.1381
Membrane Transport	Cation transporters	Magnesium transport	Magnesium and cobalt transport protein CorA	fig|6666666.229861.peg.1546
Membrane Transport	Cation transporters	Magnesium transport	Magnesium and cobalt efflux protein CorC	fig|6666666.229861.peg.828, <br>fig|6666666.229861.peg.829, <br>fig|6666666.229861.peg.1711
Membrane Transport	Cation transporters	Magnesium transport	Mg/Co/Ni transporter MgtE	fig|6666666.229861.peg.392
Membrane Transport	Cation transporters	Transport of Nickel and Cobalt	Substrate-specific component NikM of nickel ECF transporter	fig|6666666.229861.peg.2442
Membrane Transport	Cation transporters	Transport of Nickel and Cobalt	ATPase component NikO of energizing module of nickel ECF transporter	fig|6666666.229861.peg.2443
Membrane Transport	Cation transporters	Transport of Nickel and Cobalt	Transmembrane component NikQ of energizing module of nickel ECF transporter	fig|6666666.229861.peg.2444
Membrane Transport	Cation transporters	Transport of Nickel and Cobalt	Predicted cobalt ABC transporter periplasmic component	fig|6666666.229861.peg.2371
Membrane Transport	Cation transporters	Transport of Nickel and Cobalt	Additional periplasmic component NikK of nickel ECF transporter	fig|6666666.229861.peg.2373
Membrane Transport	Cation transporters	Transport of Nickel and Cobalt	Additional component NikL of nickel ECF transporter	fig|6666666.229861.peg.2441
Membrane Transport	Cation transporters	Copper Transport System	Copper-translocating P-type ATPase (EC 3.6.3.4)	fig|6666666.229861.peg.481, <br>fig|6666666.229861.peg.968, <br>fig|6666666.229861.peg.1849
Membrane Transport	Uni- Sym- and Antiporters	NhaA, NhaD and Sodium-dependent phosphate transporters	Sodium-dependent phosphate transporter	fig|6666666.229861.peg.2278
Membrane Transport	Membrane Transport - no subcategory	ECF class transporters	Transmembrane component BioN of energizing module of biotin ECF transporter	fig|6666666.229861.peg.2097
Membrane Transport	Membrane Transport - no subcategory	ECF class transporters	Substrate-specific component BioY of biotin ECF transporter	fig|6666666.229861.peg.2099
Membrane Transport	Membrane Transport - no subcategory	ECF class transporters	Transmembrane component NikQ of energizing module of nickel ECF transporter	fig|6666666.229861.peg.2444
Membrane Transport	Membrane Transport - no subcategory	ECF class transporters	Transmembrane component BL0694 of energizing module of predicted ECF transporter	fig|6666666.229861.peg.299, <br>fig|6666666.229861.peg.759, <br>fig|6666666.229861.peg.763, <br>fig|6666666.229861.peg.775, <br>fig|6666666.229861.peg.797, <br>fig|6666666.229861.peg.1415, <br>fig|6666666.229861.peg.1422, <br>fig|6666666.229861.peg.2040, <br>fig|6666666.229861.peg.2046, <br>fig|6666666.229861.peg.2464
Membrane Transport	Membrane Transport - no subcategory	ECF class transporters	Duplicated ATPase component BL0693 of energizing module of predicted ECF transporter	fig|6666666.229861.peg.298, <br>fig|6666666.229861.peg.760, <br>fig|6666666.229861.peg.764, <br>fig|6666666.229861.peg.774, <br>fig|6666666.229861.peg.796, <br>fig|6666666.229861.peg.1416, <br>fig|6666666.229861.peg.1423, <br>fig|6666666.229861.peg.2041, <br>fig|6666666.229861.peg.2045, <br>fig|6666666.229861.peg.2465
Membrane Transport	Membrane Transport - no subcategory	ECF class transporters	Substrate-specific component NikM of nickel ECF transporter	fig|6666666.229861.peg.2442
Membrane Transport	Membrane Transport - no subcategory	ECF class transporters	ATPase component NikO of energizing module of nickel ECF transporter	fig|6666666.229861.peg.2443
Membrane Transport	Membrane Transport - no subcategory	ECF class transporters	ATPase component BioM of energizing module of biotin ECF transporter	fig|6666666.229861.peg.425, <br>fig|6666666.229861.peg.1784, <br>fig|6666666.229861.peg.2098
Membrane Transport	Membrane Transport - no subcategory	ECF class transporters	Substrate-specific component BL0695 of predicted ECF transporter	fig|6666666.229861.peg.300, <br>fig|6666666.229861.peg.753, <br>fig|6666666.229861.peg.754, <br>fig|6666666.229861.peg.758, <br>fig|6666666.229861.peg.762, <br>fig|6666666.229861.peg.776, <br>fig|6666666.229861.peg.798, <br>fig|6666666.229861.peg.1414, <br>fig|6666666.229861.peg.1424, <br>fig|6666666.229861.peg.2039, <br>fig|6666666.229861.peg.2047, <br>fig|6666666.229861.peg.2466
Membrane Transport	Membrane Transport - no subcategory	Ton and Tol transport systems	TolA protein	fig|6666666.229861.peg.371
Membrane Transport	Membrane Transport - no subcategory	Ton and Tol transport systems	TPR domain protein, putative component of TonB system	fig|6666666.229861.peg.517, <br>fig|6666666.229861.peg.1993, <br>fig|6666666.229861.peg.2135
Membrane Transport	Membrane Transport - no subcategory	Ton and Tol transport systems	4-hydroxybenzoyl-CoA thioesterase family active site	fig|6666666.229861.peg.2519
Membrane Transport	TRAP transporters	TRAP Transporter collection	TRAP-type C4-dicarboxylate transport system, periplasmic component	fig|6666666.229861.peg.1533
Iron acquisition and metabolism	Iron transpot	Iron transport system including ABC transporter	Fe2+ ABC transporter, substrate binding protein	fig|6666666.229861.peg.1979
Iron acquisition and metabolism	Iron transpot	Iron transport system including ABC transporter	Fe2+ ABC transporter, ATP-binding subunit	fig|6666666.229861.peg.1982
Iron acquisition and metabolism	Iron transpot	Iron transport system including ABC transporter	High-affinity Fe2+/Pb2+ permease precursor	fig|6666666.229861.peg.1977
Iron acquisition and metabolism	Iron transpot	Iron transport system including ABC transporter	Periplasmic protein p19 involved in high-affinity Fe2+ transport	fig|6666666.229861.peg.1978
Iron acquisition and metabolism	Iron transpot	Iron transport system including ABC transporter	Fe2+ ABC transporter, permease protein 2	fig|6666666.229861.peg.1981
RNA Metabolism	RNA processing and modification	RNA pseudouridine syntheses	Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70)	fig|6666666.229861.peg.1377
RNA Metabolism	RNA processing and modification	RNA pseudouridine syntheses	Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70)	fig|6666666.229861.peg.256, <br>fig|6666666.229861.peg.1593
RNA Metabolism	RNA processing and modification	RNA pseudouridine syntheses	Similar to tRNA pseudouridine synthase C, group TruC1	fig|6666666.229861.peg.2497
RNA Metabolism	RNA processing and modification	RNA pseudouridine syntheses	Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70)	fig|6666666.229861.peg.1851
RNA Metabolism	RNA processing and modification	RNA pseudouridine syntheses	Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70)	fig|6666666.229861.peg.1393
RNA Metabolism	RNA processing and modification	RNA pseudouridine syntheses	tRNA pseudouridine synthase B (EC 4.2.1.70)	fig|6666666.229861.peg.1615
RNA Metabolism	RNA processing and modification	RNA pseudouridine syntheses	tRNA pseudouridine synthase A (EC 4.2.1.70)	fig|6666666.229861.peg.2557
RNA Metabolism	RNA processing and modification	Polyadenylation bacterial	tRNA nucleotidyltransferase (EC 2.7.7.21) (EC 2.7.7.25)	fig|6666666.229861.peg.1545
RNA Metabolism	RNA processing and modification	Polyadenylation bacterial	Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)	fig|6666666.229861.peg.1553
RNA Metabolism	RNA processing and modification	Polyadenylation bacterial	Poly(A) polymerase (EC 2.7.7.19)	fig|6666666.229861.peg.2169
RNA Metabolism	RNA processing and modification	tRNA nucleotidyltransferase	tRNA nucleotidyltransferase (EC 2.7.7.21) (EC 2.7.7.25)	fig|6666666.229861.peg.1545
RNA Metabolism	RNA processing and modification	Methylthiotransferases	tRNA-t(6)A37 methylthiotransferase	fig|6666666.229861.peg.1086
RNA Metabolism	RNA processing and modification	Methylthiotransferases	tRNA-i(6)A37 methylthiotransferase	fig|6666666.229861.peg.2019
RNA Metabolism	RNA processing and modification	Methylthiotransferases	Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase	fig|6666666.229861.peg.287
RNA Metabolism	RNA processing and modification	Ribonucleases in Bacillus	Ribonuclease HII (EC 3.1.26.4)	fig|6666666.229861.peg.2004
RNA Metabolism	RNA processing and modification	Ribonucleases in Bacillus	Metallo-beta-lactamase family protein, RNA-specific	fig|6666666.229861.peg.1909
RNA Metabolism	RNA processing and modification	RNA 3@1-terminal phosphate cyclase	RNA-2@1,3@1-PO4:RNA-5@1-OH ligase	fig|6666666.229861.peg.1326
RNA Metabolism	RNA processing and modification	RNA processing and degradation, bacterial	FIG146085: 3@1-to-5@1 oligoribonuclease A, Bacillus type	fig|6666666.229861.peg.1946
RNA Metabolism	RNA processing and modification	RNA processing and degradation, bacterial	Ribonuclease III (EC 3.1.26.3)	fig|6666666.229861.peg.1540
RNA Metabolism	RNA processing and modification	RNA methylation	tRNA:Cm32/Um32 methyltransferase	fig|6666666.229861.peg.2396
RNA Metabolism	RNA processing and modification	RNA methylation	tRNA (guanosine(18)-2@1-O)-methyltransferase (EC 2.1.1.34)	fig|6666666.229861.peg.523
RNA Metabolism	RNA processing and modification	RNA methylation	Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-)	fig|6666666.229861.peg.1077
RNA Metabolism	RNA processing and modification	RNA methylation	Ribosomal RNA large subunit methyltransferase E (EC 2.1.1.-)	fig|6666666.229861.peg.2282
RNA Metabolism	RNA processing and modification	RNA methylation	SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase (EC 2.1.1.182)	fig|6666666.229861.peg.1591
RNA Metabolism	RNA processing and modification	RNA methylation	23S rRNA (guanosine-2@1-O-) -methyltransferase rlmB (EC 2.1.1.-)	fig|6666666.229861.peg.1908
RNA Metabolism	RNA processing and modification	RNA methylation	tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33)	fig|6666666.229861.peg.1641
RNA Metabolism	RNA processing and modification	RNA methylation	Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-)	fig|6666666.229861.peg.2386
RNA Metabolism	RNA processing and modification	RNA methylation	tRNA (Guanine37-N1) -methyltransferase (EC 2.1.1.31)	fig|6666666.229861.peg.1400
RNA Metabolism	RNA processing and modification	RNA methylation	23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-)	fig|6666666.229861.peg.1107
RNA Metabolism	RNA processing and modification	RNA methylation	LSU rRNA 2@1-O-methyl-C2498 methyltransferase RlmM	fig|6666666.229861.peg.228
RNA Metabolism	RNA processing and modification	RNA methylation	tRNA (uracil(54)-C5)-methyltransferase (EC 2.1.1.35)	fig|6666666.229861.peg.296
RNA Metabolism	RNA processing and modification	RNA methylation	rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB	fig|6666666.229861.peg.200
RNA Metabolism	RNA processing and modification	RNA methylation	tRNA-specific 2-thiouridylase MnmA	fig|6666666.229861.peg.1237
RNA Metabolism	RNA processing and modification	RNA methylation	16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171)	fig|6666666.229861.peg.1082
RNA Metabolism	RNA processing and modification	16S rRNA modification within P site of ribosome	Penicillin-binding protein 2 (PBP-2)	fig|6666666.229861.peg.1821
RNA Metabolism	RNA processing and modification	16S rRNA modification within P site of ribosome	Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129)	fig|6666666.229861.peg.1786
RNA Metabolism	RNA processing and modification	16S rRNA modification within P site of ribosome	Cell division protein MraZ	fig|6666666.229861.peg.1668
RNA Metabolism	RNA processing and modification	16S rRNA modification within P site of ribosome	rRNA small subunit methyltransferase H	fig|6666666.229861.peg.1669
RNA Metabolism	RNA processing and modification	16S rRNA modification within P site of ribosome	rRNA small subunit methyltransferase I	fig|6666666.229861.peg.667
RNA Metabolism	RNA processing and modification	16S rRNA modification within P site of ribosome	Cell division protein FtsL	fig|6666666.229861.peg.1670
RNA Metabolism	RNA processing and modification	tRNA modification Bacteria	FIG137478: Hypothetical protein	fig|6666666.229861.peg.1216, <br>fig|6666666.229861.peg.1816
RNA Metabolism	RNA processing and modification	tRNA modification Bacteria	tRNA:Cm32/Um32 methyltransferase	fig|6666666.229861.peg.2396
RNA Metabolism	RNA processing and modification	tRNA modification Bacteria	tRNA (guanosine(18)-2@1-O)-methyltransferase (EC 2.1.1.34)	fig|6666666.229861.peg.523
RNA Metabolism	RNA processing and modification	tRNA modification Bacteria	tRNA(Cytosine32)-2-thiocytidine synthetase	fig|6666666.229861.peg.950
RNA Metabolism	RNA processing and modification	tRNA modification Bacteria	S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-)	fig|6666666.229861.peg.141
RNA Metabolism	RNA processing and modification	tRNA modification Bacteria	tRNA(Ile)-lysidine synthetase (EC 6.3.4.19)	fig|6666666.229861.peg.1810
RNA Metabolism	RNA processing and modification	tRNA modification Bacteria	Iron-sulfur cluster assembly ATPase protein SufC	fig|6666666.229861.peg.1210
RNA Metabolism	RNA processing and modification	tRNA modification Bacteria	tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33)	fig|6666666.229861.peg.1641
RNA Metabolism	RNA processing and modification	tRNA modification Bacteria	Cysteine desulfurase (EC 2.8.1.7)	fig|6666666.229861.peg.152, <br>fig|6666666.229861.peg.567, <br>fig|6666666.229861.peg.1226
RNA Metabolism	RNA processing and modification	tRNA modification Bacteria	FIG004453: protein YceG like	fig|6666666.229861.peg.2000
RNA Metabolism	RNA processing and modification	tRNA modification Bacteria	tRNA-guanine transglycosylase (EC 2.4.2.29)	fig|6666666.229861.peg.935
RNA Metabolism	RNA processing and modification	tRNA modification Bacteria	tRNA S(4)U 4-thiouridine synthase (former ThiI)	fig|6666666.229861.peg.248
RNA Metabolism	RNA processing and modification	tRNA modification Bacteria	tRNA-i(6)A37 methylthiotransferase	fig|6666666.229861.peg.2019
RNA Metabolism	RNA processing and modification	tRNA modification Bacteria	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA	fig|6666666.229861.peg.1348
RNA Metabolism	RNA processing and modification	tRNA modification Bacteria	Selenide,water dikinase (EC 2.7.9.3)	fig|6666666.229861.peg.153, <br>fig|6666666.229861.peg.154
RNA Metabolism	RNA processing and modification	tRNA modification Bacteria	tRNA pseudouridine synthase B (EC 4.2.1.70)	fig|6666666.229861.peg.1615
RNA Metabolism	RNA processing and modification	tRNA modification Bacteria	Iron-sulfur cluster assembly protein SufD	fig|6666666.229861.peg.1212
RNA Metabolism	RNA processing and modification	tRNA modification Bacteria	GTPase and tRNA-U34 5-formylation enzyme TrmE	fig|6666666.229861.peg.2482
RNA Metabolism	RNA processing and modification	tRNA modification Bacteria	tRNA dihydrouridine synthase B (EC 1.-.-.-)	fig|6666666.229861.peg.428, <br>fig|6666666.229861.peg.591
RNA Metabolism	RNA processing and modification	tRNA modification Bacteria	tRNA (Guanine37-N1) -methyltransferase (EC 2.1.1.31)	fig|6666666.229861.peg.1400
RNA Metabolism	RNA processing and modification	tRNA modification Bacteria	Cytidine deaminase (EC 3.5.4.5)	fig|6666666.229861.peg.1123
RNA Metabolism	RNA processing and modification	tRNA modification Bacteria	tRNA dimethylallyltransferase (EC 2.5.1.75)	fig|6666666.229861.peg.530, <br>fig|6666666.229861.peg.1912
RNA Metabolism	RNA processing and modification	tRNA modification Bacteria	Cysteine desulfurase (EC 2.8.1.7), SufS subfamily	fig|6666666.229861.peg.2365
RNA Metabolism	RNA processing and modification	tRNA modification Bacteria	Iron-sulfur cluster assembly protein SufB	fig|6666666.229861.peg.1211
RNA Metabolism	RNA processing and modification	tRNA modification Bacteria	COG0613, Predicted metal-dependent phosphoesterases (PHP family)	fig|6666666.229861.peg.295
RNA Metabolism	RNA processing and modification	tRNA modification Bacteria	tRNA (uracil(54)-C5)-methyltransferase (EC 2.1.1.35)	fig|6666666.229861.peg.296
RNA Metabolism	RNA processing and modification	tRNA modification Bacteria	tRNA pseudouridine synthase A (EC 4.2.1.70)	fig|6666666.229861.peg.2557
RNA Metabolism	RNA processing and modification	mnm5U34 biosynthesis bacteria	GTPase and tRNA-U34 5-formylation enzyme TrmE	fig|6666666.229861.peg.2482
RNA Metabolism	RNA processing and modification	mnm5U34 biosynthesis bacteria	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA	fig|6666666.229861.peg.1348
RNA Metabolism	RNA processing and modification	mnm5U34 biosynthesis bacteria	Cysteine desulfurase (EC 2.8.1.7)	fig|6666666.229861.peg.152, <br>fig|6666666.229861.peg.567, <br>fig|6666666.229861.peg.1226
RNA Metabolism	RNA processing and modification	mnm5U34 biosynthesis bacteria	Cysteine desulfurase (EC 2.8.1.7), SufS subfamily	fig|6666666.229861.peg.2365
RNA Metabolism	RNA processing and modification	Ribonuclease H	Ribonuclease HI (EC 3.1.26.4)	fig|6666666.229861.peg.250
RNA Metabolism	RNA processing and modification	Ribonuclease H	Ribonuclease HII (EC 3.1.26.4)	fig|6666666.229861.peg.2004
RNA Metabolism	RNA processing and modification	Queuosine-Archaeosine Biosynthesis	Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8)	fig|6666666.229861.peg.88
RNA Metabolism	RNA processing and modification	Queuosine-Archaeosine Biosynthesis	Putative preQ0 transporter	fig|6666666.229861.peg.1366
RNA Metabolism	RNA processing and modification	Queuosine-Archaeosine Biosynthesis	S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-)	fig|6666666.229861.peg.141
RNA Metabolism	RNA processing and modification	Queuosine-Archaeosine Biosynthesis	Permease of the drug/metabolite transporter (DMT) superfamily	fig|6666666.229861.peg.163, <br>fig|6666666.229861.peg.655, <br>fig|6666666.229861.peg.1084, <br>fig|6666666.229861.peg.1220, <br>fig|6666666.229861.peg.2501
RNA Metabolism	RNA processing and modification	Queuosine-Archaeosine Biosynthesis	tRNA-guanine transglycosylase (EC 2.4.2.29)	fig|6666666.229861.peg.935
RNA Metabolism	RNA processing and modification	tRNA processing	Ribonuclease Z (EC 3.1.26.11)	fig|6666666.229861.peg.2269
RNA Metabolism	RNA processing and modification	tRNA processing	Ribonuclease P protein component (EC 3.1.26.5)	fig|6666666.229861.peg.93
RNA Metabolism	RNA processing and modification	tRNA processing	tRNA-i(6)A37 methylthiotransferase	fig|6666666.229861.peg.2019
RNA Metabolism	RNA processing and modification	tRNA processing	tRNA dimethylallyltransferase (EC 2.5.1.75)	fig|6666666.229861.peg.530, <br>fig|6666666.229861.peg.1912
RNA Metabolism	RNA processing and modification	tRNA processing	tRNA(Ile)-lysidine synthetase (EC 6.3.4.19)	fig|6666666.229861.peg.1810
RNA Metabolism	RNA processing and modification	tRNA processing	tRNA pseudouridine synthase B (EC 4.2.1.70)	fig|6666666.229861.peg.1615
RNA Metabolism	RNA processing and modification	tRNA processing	tRNA pseudouridine synthase A (EC 4.2.1.70)	fig|6666666.229861.peg.2557
RNA Metabolism	Transcription	Transcription initiation, bacterial sigma factors	RNA polymerase sigma-54 factor RpoN	fig|6666666.229861.peg.98
RNA Metabolism	Transcription	Transcription initiation, bacterial sigma factors	RNA polymerase sigma factor RpoD	fig|6666666.229861.peg.543, <br>fig|6666666.229861.peg.1456, <br>fig|6666666.229861.peg.1815
RNA Metabolism	Transcription	Transcription initiation, bacterial sigma factors	RNA polymerase sigma factor RpoE	fig|6666666.229861.peg.556
RNA Metabolism	Transcription	Transcription initiation, bacterial sigma factors	RNA polymerase sigma factor SigB	fig|6666666.229861.peg.356
RNA Metabolism	Transcription	RNA polymerase bacterial	DNA-directed RNA polymerase alpha subunit (EC 2.7.7.6)	fig|6666666.229861.peg.1313
RNA Metabolism	Transcription	RNA polymerase bacterial	DNA-directed RNA polymerase beta@1 subunit (EC 2.7.7.6)	fig|6666666.229861.peg.113
RNA Metabolism	Transcription	RNA polymerase bacterial	DNA-directed RNA polymerase beta subunit (EC 2.7.7.6)	fig|6666666.229861.peg.114
RNA Metabolism	Transcription	Transcription factors bacterial	Transcription termination protein NusB	fig|6666666.229861.peg.2105
RNA Metabolism	Transcription	Transcription factors bacterial	Transcription accessory protein (S1 RNA-binding domain)	fig|6666666.229861.peg.1525
RNA Metabolism	Transcription	Transcription factors bacterial	Transcription elongation factor GreA	fig|6666666.229861.peg.367
RNA Metabolism	Transcription	Transcription factors bacterial	Transcription termination factor Rho	fig|6666666.229861.peg.1970
RNA Metabolism	Transcription	Transcription factors bacterial	Transcription antitermination protein NusG	fig|6666666.229861.peg.119, <br>fig|6666666.229861.peg.1258
RNA Metabolism	Transcription	Transcription factors bacterial	Transcription-repair coupling factor	fig|6666666.229861.peg.1763
RNA Metabolism	Transcription	Transcription factors bacterial	FIG000325: clustered with transcription termination protein NusA	fig|6666666.229861.peg.1619
RNA Metabolism	Transcription	Transcription factors bacterial	Transcription termination protein NusA	fig|6666666.229861.peg.1618
RNA Metabolism	Transcription	Rrf2 family transcriptional regulators	Rrf2 family transcriptional regulator, group III	fig|6666666.229861.peg.1223, <br>fig|6666666.229861.peg.1323
Nucleosides and Nucleotides	Pyrimidines	pyrimidine conversions	Thymidylate kinase (EC 2.7.4.9)	fig|6666666.229861.peg.275
Nucleosides and Nucleotides	Pyrimidines	pyrimidine conversions	Thioredoxin reductase (EC 1.8.1.9)	fig|6666666.229861.peg.1272
Nucleosides and Nucleotides	Pyrimidines	pyrimidine conversions	Pyrimidine-nucleoside phosphorylase (EC 2.4.2.2)	fig|6666666.229861.peg.2493
Nucleosides and Nucleotides	Pyrimidines	pyrimidine conversions	Cytidylate kinase (EC 2.7.4.25)	fig|6666666.229861.peg.1597, <br>fig|6666666.229861.peg.2393
Nucleosides and Nucleotides	Pyrimidines	pyrimidine conversions	Purine nucleoside phosphorylase (EC 2.4.2.1)	fig|6666666.229861.peg.958
Nucleosides and Nucleotides	Pyrimidines	pyrimidine conversions	5@1-nucleotidase (EC 3.1.3.5)	fig|6666666.229861.peg.2549
Nucleosides and Nucleotides	Pyrimidines	pyrimidine conversions	Cytidine deaminase (EC 3.5.4.5)	fig|6666666.229861.peg.1123
Nucleosides and Nucleotides	Pyrimidines	pyrimidine conversions	Uridine kinase (EC 2.7.1.48)	fig|6666666.229861.peg.2570
Nucleosides and Nucleotides	Pyrimidines	pyrimidine conversions	2@1,3@1-cyclic-nucleotide 2@1-phosphodiesterase (EC 3.1.4.16)	fig|6666666.229861.peg.1388
Nucleosides and Nucleotides	Pyrimidines	pyrimidine conversions	CTP synthase (EC 6.3.4.2)	fig|6666666.229861.peg.363
Nucleosides and Nucleotides	Pyrimidines	De Novo Pyrimidine Synthesis	Uracil permease	fig|6666666.229861.peg.2546
Nucleosides and Nucleotides	Pyrimidines	De Novo Pyrimidine Synthesis	Orotidine 5@1-phosphate decarboxylase (EC 4.1.1.23)	fig|6666666.229861.peg.2419
Nucleosides and Nucleotides	Pyrimidines	De Novo Pyrimidine Synthesis	Aspartate carbamoyltransferase (EC 2.1.3.2)	fig|6666666.229861.peg.598
Nucleosides and Nucleotides	Pyrimidines	De Novo Pyrimidine Synthesis	Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)	fig|6666666.229861.peg.1497
Nucleosides and Nucleotides	Pyrimidines	De Novo Pyrimidine Synthesis	Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)	fig|6666666.229861.peg.1497
Nucleosides and Nucleotides	Pyrimidines	De Novo Pyrimidine Synthesis	Orotate phosphoribosyltransferase (EC 2.4.2.10)	fig|6666666.229861.peg.1514
Nucleosides and Nucleotides	Pyrimidines	De Novo Pyrimidine Synthesis	Aspartate carbamoyltransferase regulatory chain (PyrI)	fig|6666666.229861.peg.598
Nucleosides and Nucleotides	Pyrimidines	De Novo Pyrimidine Synthesis	Dihydroorotase (EC 3.5.2.3)	fig|6666666.229861.peg.2416
Nucleosides and Nucleotides	Purines	De Novo Purine Biosynthesis	Phosphoribosylamine--glycine ligase (EC 6.3.4.13)	fig|6666666.229861.peg.1734
Nucleosides and Nucleotides	Purines	De Novo Purine Biosynthesis	IMP cyclohydrolase (EC 3.5.4.10)	fig|6666666.229861.peg.1095
Nucleosides and Nucleotides	Purines	De Novo Purine Biosynthesis	Amidophosphoribosyltransferase (EC 2.4.2.14)	fig|6666666.229861.peg.101
Nucleosides and Nucleotides	Purines	De Novo Purine Biosynthesis	Ribose-phosphate pyrophosphokinase (EC 2.7.6.1)	fig|6666666.229861.peg.421
Nucleosides and Nucleotides	Purines	De Novo Purine Biosynthesis	Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21)	fig|6666666.229861.peg.1234
Nucleosides and Nucleotides	Purines	De Novo Purine Biosynthesis	Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2)	fig|6666666.229861.peg.1096
Nucleosides and Nucleotides	Purines	De Novo Purine Biosynthesis	Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6)	fig|6666666.229861.peg.1233
Nucleosides and Nucleotides	Purines	De Novo Purine Biosynthesis	Adenylosuccinate lyase (EC 4.3.2.2)	fig|6666666.229861.peg.1966
Nucleosides and Nucleotides	Purines	De Novo Purine Biosynthesis	Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1)	fig|6666666.229861.peg.1733
Nucleosides and Nucleotides	Purines	De Novo Purine Biosynthesis	Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)	fig|6666666.229861.peg.1095
Nucleosides and Nucleotides	Purines	De Novo Purine Biosynthesis	Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3)	fig|6666666.229861.peg.1752
Nucleosides and Nucleotides	Purines	De Novo Purine Biosynthesis	Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3)	fig|6666666.229861.peg.1869
Nucleosides and Nucleotides	Purines	Purine Utilization	Xanthine/uracil/thiamine/ascorbate permease family protein	fig|6666666.229861.peg.1826
Nucleosides and Nucleotides	Purines	Purine Utilization	Xanthine dehydrogenase, FAD binding subunit (EC 1.17.1.4)	fig|6666666.229861.peg.1266
Nucleosides and Nucleotides	Purines	Purine Utilization	Xanthine dehydrogenase iron-sulfur subunit (EC 1.17.1.4)	fig|6666666.229861.peg.1265
Nucleosides and Nucleotides	Purines	GMP synthase	GMP synthase [glutamine-hydrolyzing], ATP pyrophosphatase subunit (EC 6.3.5.2)	fig|6666666.229861.peg.2165
Nucleosides and Nucleotides	Purines	GMP synthase	GMP synthase [glutamine-hydrolyzing], amidotransferase subunit (EC 6.3.5.2)	fig|6666666.229861.peg.2165
Nucleosides and Nucleotides	Purines	Purine conversions	Adenylate kinase (EC 2.7.4.3)	fig|6666666.229861.peg.1624
Nucleosides and Nucleotides	Purines	Purine conversions	GMP synthase [glutamine-hydrolyzing], amidotransferase subunit (EC 6.3.5.2)	fig|6666666.229861.peg.2165
Nucleosides and Nucleotides	Purines	Purine conversions	Inosine-5@1-monophosphate dehydrogenase (EC 1.1.1.205)	fig|6666666.229861.peg.337
Nucleosides and Nucleotides	Purines	Purine conversions	Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8)	fig|6666666.229861.peg.2002
Nucleosides and Nucleotides	Purines	Purine conversions	Purine nucleoside phosphorylase (EC 2.4.2.1)	fig|6666666.229861.peg.958
Nucleosides and Nucleotides	Purines	Purine conversions	Adenylosuccinate lyase (EC 4.3.2.2)	fig|6666666.229861.peg.1966
Nucleosides and Nucleotides	Purines	Purine conversions	5@1-nucleotidase (EC 3.1.3.5)	fig|6666666.229861.peg.2549
Nucleosides and Nucleotides	Purines	Purine conversions	GMP synthase [glutamine-hydrolyzing], ATP pyrophosphatase subunit (EC 6.3.5.2)	fig|6666666.229861.peg.2165
Nucleosides and Nucleotides	Purines	Purine conversions	dNTP triphosphohydrolase, putative	fig|6666666.229861.peg.1871
Nucleosides and Nucleotides	Purines	Purine conversions	Adenine phosphoribosyltransferase (EC 2.4.2.7)	fig|6666666.229861.peg.2132
Nucleosides and Nucleotides	Purines	Purine conversions	Adenosine deaminase (EC 3.5.4.4)	fig|6666666.229861.peg.653
Nucleosides and Nucleotides	Purines	Purine conversions	2@1,3@1-cyclic-nucleotide 2@1-phosphodiesterase (EC 3.1.4.16)	fig|6666666.229861.peg.1388
Nucleosides and Nucleotides	Nucleosides and Nucleotides - no subcategory	Ribonucleotide reduction	Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)	fig|6666666.229861.peg.400
Nucleosides and Nucleotides	Nucleosides and Nucleotides - no subcategory	Ribonucleotide reduction	Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)	fig|6666666.229861.peg.1800
Nucleosides and Nucleotides	Nucleosides and Nucleotides - no subcategory	Ribonucleotide reduction	Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	fig|6666666.229861.peg.842
Nucleosides and Nucleotides	Nucleosides and Nucleotides - no subcategory	Ribonucleotide reduction	Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	fig|6666666.229861.peg.850
Nucleosides and Nucleotides	Nucleosides and Nucleotides - no subcategory	Ribonucleotide reduction	Ribonucleotide reductase transcriptional regulator NrdR	fig|6666666.229861.peg.1799
Nucleosides and Nucleotides	Nucleosides and Nucleotides - no subcategory	dNTP triphosphohydrolase protein family	dNTP triphosphohydrolase, putative	fig|6666666.229861.peg.1871
Nucleosides and Nucleotides	Nucleosides and Nucleotides - no subcategory	Adenosyl nucleosidases	S-adenosylhomocysteine nucleosidase (EC 3.2.2.9)	fig|6666666.229861.peg.569
Nucleosides and Nucleotides	Nucleosides and Nucleotides - no subcategory	Adenosyl nucleosidases	Purine nucleoside phosphorylase (EC 2.4.2.1)	fig|6666666.229861.peg.958
Nucleosides and Nucleotides	Nucleosides and Nucleotides - no subcategory	Adenosyl nucleosidases	5@1-methylthioadenosine nucleosidase (EC 3.2.2.16)	fig|6666666.229861.peg.569
Nucleosides and Nucleotides	Detoxification	Nucleoside triphosphate pyrophosphohydrolase MazG	Nucleoside triphosphate pyrophosphohydrolase MazG (EC 3.6.1.8)	fig|6666666.229861.peg.2567
Nucleosides and Nucleotides	Detoxification	Nudix proteins (nucleoside triphosphate hydrolases)	Deoxyuridine 5@1-triphosphate nucleotidohydrolase (EC 3.6.1.23)	fig|6666666.229861.peg.1554
Nucleosides and Nucleotides	Detoxification	Nudix proteins (nucleoside triphosphate hydrolases)	ADP-ribose pyrophosphatase (EC 3.6.1.13)	fig|6666666.229861.peg.484
Nucleosides and Nucleotides	Detoxification	Housecleaning nucleoside triphosphate pyrophosphatases	Deoxyuridine 5@1-triphosphate nucleotidohydrolase (EC 3.6.1.23)	fig|6666666.229861.peg.1554
Nucleosides and Nucleotides	Detoxification	Housecleaning nucleoside triphosphate pyrophosphatases	Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15)	fig|6666666.229861.peg.2554
Protein Metabolism	Protein folding	GroEL GroES	Heat shock protein GrpE	fig|6666666.229861.peg.1169
Protein Metabolism	Protein folding	GroEL GroES	Chaperone protein DnaK	fig|6666666.229861.peg.1170
Protein Metabolism	Protein folding	GroEL GroES	Chaperone protein DnaJ	fig|6666666.229861.peg.1171, <br>fig|6666666.229861.peg.2398
Protein Metabolism	Protein folding	GroEL GroES	Heat shock protein 60 family co-chaperone GroES	fig|6666666.229861.peg.1455
Protein Metabolism	Protein folding	GroEL GroES	Heat shock protein 60 family chaperone GroEL	fig|6666666.229861.peg.1645
Protein Metabolism	Protein folding	Protein chaperones	Heat shock protein GrpE	fig|6666666.229861.peg.1169
Protein Metabolism	Protein folding	Protein chaperones	Chaperone protein DnaK	fig|6666666.229861.peg.1170
Protein Metabolism	Protein folding	Protein chaperones	Chaperone protein DnaJ	fig|6666666.229861.peg.1171, <br>fig|6666666.229861.peg.2398
Protein Metabolism	Protein folding	Protein chaperones	Chaperone protein HtpG	fig|6666666.229861.peg.171
Protein Metabolism	Protein folding	Protein chaperones	ClpB protein	fig|6666666.229861.peg.26, <br>fig|6666666.229861.peg.2347
Protein Metabolism	Protein folding	Peptidyl-prolyl cis-trans isomerase	FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8)	fig|6666666.229861.peg.1117
Protein Metabolism	Protein folding	Peptidyl-prolyl cis-trans isomerase	FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8)	fig|6666666.229861.peg.2568
Protein Metabolism	Selenoproteins	Glycine reductase, sarcosine reductase and betaine reductase	Thioredoxin	fig|6666666.229861.peg.750, <br>fig|6666666.229861.peg.1273
Protein Metabolism	Selenoproteins	Glycine reductase, sarcosine reductase and betaine reductase	Glycine reductase component B alpha subunit (EC 1.21.4.2)	fig|6666666.229861.peg.2431
Protein Metabolism	Selenoproteins	Glycine reductase, sarcosine reductase and betaine reductase	Glycine reductase component B beta subunit (EC 1.21.4.2)	fig|6666666.229861.peg.2431
Protein Metabolism	Selenoproteins	Glycine reductase, sarcosine reductase and betaine reductase	Glycine/sarcosine/betaine reductase component C chain 1	fig|6666666.229861.peg.752
Protein Metabolism	Selenoproteins	Glycine reductase, sarcosine reductase and betaine reductase	Glycine/sarcosine/betaine reductase component C chain 2	fig|6666666.229861.peg.751
Protein Metabolism	Selenoproteins	Glycine reductase, sarcosine reductase and betaine reductase	Glycine/sarcosine/betaine reductase protein A	fig|6666666.229861.peg.1274, <br>fig|6666666.229861.peg.1275, <br>fig|6666666.229861.peg.1276
Protein Metabolism	Selenoproteins	Glycine reductase, sarcosine reductase and betaine reductase	Thioredoxin reductase (EC 1.8.1.9)	fig|6666666.229861.peg.1272
Protein Metabolism	Selenoproteins	Glycine reductase, sarcosine reductase and betaine reductase	Glycine reductase component B gamma subunit (EC 1.21.4.2)	fig|6666666.229861.peg.2428, <br>fig|6666666.229861.peg.2429, <br>fig|6666666.229861.peg.2430
Protein Metabolism	Selenoproteins	Selenocysteine metabolism	selenocysteine-containing	fig|6666666.229861.peg.153, <br>fig|6666666.229861.peg.1274, <br>fig|6666666.229861.peg.1276, <br>fig|6666666.229861.peg.2428, <br>fig|6666666.229861.peg.2430
Protein Metabolism	Selenoproteins	Selenocysteine metabolism	L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1)	fig|6666666.229861.peg.168
Protein Metabolism	Selenoproteins	Selenocysteine metabolism	Selenocysteine-specific translation elongation factor	fig|6666666.229861.peg.2277
Protein Metabolism	Selenoproteins	Selenocysteine metabolism	Selenide,water dikinase (EC 2.7.9.3)	fig|6666666.229861.peg.153, <br>fig|6666666.229861.peg.154
Protein Metabolism	Protein biosynthesis	tRNA aminoacylation, Val	Valyl-tRNA synthetase (EC 6.1.1.9)	fig|6666666.229861.peg.1829
Protein Metabolism	Protein biosynthesis	tRNA aminoacylation, Met	Methionyl-tRNA synthetase (EC 6.1.1.10)	fig|6666666.229861.peg.1574
Protein Metabolism	Protein biosynthesis	tRNA aminoacylation, Ile	Isoleucyl-tRNA synthetase (EC 6.1.1.5)	fig|6666666.229861.peg.336
Protein Metabolism	Protein biosynthesis	tRNA aminoacylation, Arg	Arginyl-tRNA synthetase (EC 6.1.1.19)	fig|6666666.229861.peg.1491
Protein Metabolism	Protein biosynthesis	Translation initiation factors bacterial	Translation initiation factor 1	fig|6666666.229861.peg.2399
Protein Metabolism	Protein biosynthesis	Translation initiation factors bacterial	Methionyl-tRNA formyltransferase (EC 2.1.2.9)	fig|6666666.229861.peg.2094
Protein Metabolism	Protein biosynthesis	Translation initiation factors bacterial	Translation initiation factor 3	fig|6666666.229861.peg.2463
Protein Metabolism	Protein biosynthesis	Translation initiation factors bacterial	Translation initiation factor 2	fig|6666666.229861.peg.1617
Protein Metabolism	Protein biosynthesis	Translation initiation factors bacterial	Ribosome-binding factor A	fig|6666666.229861.peg.1616
Protein Metabolism	Protein biosynthesis	tRNA aminoacylation, Gly	Glycyl-tRNA synthetase (EC 6.1.1.14)	fig|6666666.229861.peg.494
Protein Metabolism	Protein biosynthesis	tRNA aminoacylation, Ala	Alanyl-tRNA synthetase (EC 6.1.1.7)	fig|6666666.229861.peg.2107
Protein Metabolism	Protein biosynthesis	tRNA aminoacylation, Trp	Tryptophanyl-tRNA synthetase (EC 6.1.1.2)	fig|6666666.229861.peg.2031
Protein Metabolism	Protein biosynthesis	Ribosome biogenesis bacterial	16S rRNA processing protein RimM	fig|6666666.229861.peg.1399
Protein Metabolism	Protein biosynthesis	Ribosome biogenesis bacterial	tRNA (Guanine37-N1) -methyltransferase (EC 2.1.1.31)	fig|6666666.229861.peg.1400
Protein Metabolism	Protein biosynthesis	Ribosome biogenesis bacterial	TsaB protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA	fig|6666666.229861.peg.1937
Protein Metabolism	Protein biosynthesis	Ribosome biogenesis bacterial	Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70)	fig|6666666.229861.peg.256, <br>fig|6666666.229861.peg.1593
Protein Metabolism	Protein biosynthesis	Ribosome biogenesis bacterial	Similar to tRNA pseudouridine synthase C, group TruC1	fig|6666666.229861.peg.2497
Protein Metabolism	Protein biosynthesis	Ribosome biogenesis bacterial	Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70)	fig|6666666.229861.peg.1851
Protein Metabolism	Protein biosynthesis	Ribosome biogenesis bacterial	SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase (EC 2.1.1.182)	fig|6666666.229861.peg.1591
Protein Metabolism	Protein biosynthesis	Ribosome LSU bacterial	LSU ribosomal protein L18p (L5e)	fig|6666666.229861.peg.1306
Protein Metabolism	Protein biosynthesis	Ribosome LSU bacterial	LSU ribosomal protein L11p (L12e)	fig|6666666.229861.peg.118
Protein Metabolism	Protein biosynthesis	Ribosome LSU bacterial	LSU ribosomal protein L5p (L11e)	fig|6666666.229861.peg.1303
Protein Metabolism	Protein biosynthesis	Ribosome LSU bacterial	LSU ribosomal protein L23p (L23Ae)	fig|6666666.229861.peg.1293
Protein Metabolism	Protein biosynthesis	Ribosome LSU bacterial	LSU ribosomal protein L14p (L23e)	fig|6666666.229861.peg.1301
Protein Metabolism	Protein biosynthesis	Ribosome LSU bacterial	LSU ribosomal protein L31p, zinc-dependent	fig|6666666.229861.peg.1971
Protein Metabolism	Protein biosynthesis	Ribosome LSU bacterial	LSU ribosomal protein L2p (L8e)	fig|6666666.229861.peg.1294
Protein Metabolism	Protein biosynthesis	Ribosome LSU bacterial	LSU ribosomal protein L31p	fig|6666666.229861.peg.1971
Protein Metabolism	Protein biosynthesis	Ribosome LSU bacterial	LSU ribosomal protein L6p (L9e)	fig|6666666.229861.peg.1305
Protein Metabolism	Protein biosynthesis	Ribosome LSU bacterial	LSU ribosomal protein L21p	fig|6666666.229861.peg.2199
Protein Metabolism	Protein biosynthesis	Ribosome LSU bacterial	LSU ribosomal protein L24p (L26e)	fig|6666666.229861.peg.1302
Protein Metabolism	Protein biosynthesis	Ribosome LSU bacterial	LSU ribosomal protein L29p (L35e)	fig|6666666.229861.peg.1299
Protein Metabolism	Protein biosynthesis	Ribosome LSU bacterial	LSU ribosomal protein L30p (L7e)	fig|6666666.229861.peg.1308
Protein Metabolism	Protein biosynthesis	Ribosome LSU bacterial	LSU ribosomal protein L1p (L10Ae)	fig|6666666.229861.peg.117
Protein Metabolism	Protein biosynthesis	Ribosome LSU bacterial	LSU ribosomal protein L33p, zinc-dependent	fig|6666666.229861.peg.121
Protein Metabolism	Protein biosynthesis	Ribosome LSU bacterial	LSU ribosomal protein L16p (L10e)	fig|6666666.229861.peg.1298
Protein Metabolism	Protein biosynthesis	Ribosome LSU bacterial	LSU ribosomal protein L25p	fig|6666666.229861.peg.1809
Protein Metabolism	Protein biosynthesis	Ribosome LSU bacterial	LSU ribosomal protein L3p (L3e)	fig|6666666.229861.peg.1291
Protein Metabolism	Protein biosynthesis	Ribosome LSU bacterial	LSU ribosomal protein L15p (L27Ae)	fig|6666666.229861.peg.1309
Protein Metabolism	Protein biosynthesis	Ribosome LSU bacterial	LSU ribosomal protein L13p (L13Ae)	fig|6666666.229861.peg.1369
Protein Metabolism	Protein biosynthesis	Ribosome LSU bacterial	LSU ribosomal protein L22p (L17e)	fig|6666666.229861.peg.1296
Protein Metabolism	Protein biosynthesis	Ribosome LSU bacterial	LSU ribosomal protein L34p	fig|6666666.229861.peg.94
Protein Metabolism	Protein biosynthesis	Ribosome LSU bacterial	LSU ribosomal protein L10p (P0)	fig|6666666.229861.peg.116
Protein Metabolism	Protein biosynthesis	Ribosome LSU bacterial	LSU ribosomal protein L9p	fig|6666666.229861.peg.2123
Protein Metabolism	Protein biosynthesis	Ribosome LSU bacterial	LSU ribosomal protein L7/L12 (P1/P2)	fig|6666666.229861.peg.115
Protein Metabolism	Protein biosynthesis	Ribosome LSU bacterial	LSU ribosomal protein L28p	fig|6666666.229861.peg.1505
Protein Metabolism	Protein biosynthesis	Ribosome LSU bacterial	LSU ribosomal protein L19p	fig|6666666.229861.peg.1401
Protein Metabolism	Protein biosynthesis	Ribosome LSU bacterial	LSU ribosomal protein L35p	fig|6666666.229861.peg.2462
Protein Metabolism	Protein biosynthesis	Ribosome LSU bacterial	LSU ribosomal protein L20p	fig|6666666.229861.peg.2461
Protein Metabolism	Protein biosynthesis	Ribosome LSU bacterial	LSU ribosomal protein L32p	fig|6666666.229861.peg.1538
Protein Metabolism	Protein biosynthesis	Ribosome LSU bacterial	LSU ribosomal protein L33p	fig|6666666.229861.peg.121
Protein Metabolism	Protein biosynthesis	Ribosome LSU bacterial	LSU ribosomal protein L17p	fig|6666666.229861.peg.1314
Protein Metabolism	Protein biosynthesis	Ribosome LSU bacterial	LSU ribosomal protein L27p	fig|6666666.229861.peg.2197
Protein Metabolism	Protein biosynthesis	Ribosome LSU bacterial	LSU ribosomal protein L4p (L1e)	fig|6666666.229861.peg.1292
Protein Metabolism	Protein biosynthesis	Programmed frameshift	programmed frameshift-containing	fig|6666666.229861.peg.2357
Protein Metabolism	Protein biosynthesis	Programmed frameshift	Peptide chain release factor 2	fig|6666666.229861.peg.2357
Protein Metabolism	Protein biosynthesis	tRNA aminoacylation, Cys	Cysteinyl-tRNA synthetase (EC 6.1.1.16)	fig|6666666.229861.peg.557
Protein Metabolism	Protein biosynthesis	Translation termination factors bacterial	Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2	fig|6666666.229861.peg.179
Protein Metabolism	Protein biosynthesis	Translation termination factors bacterial	Ribosome recycling factor	fig|6666666.229861.peg.43
Protein Metabolism	Protein biosynthesis	Translation termination factors bacterial	Peptidyl-tRNA hydrolase (EC 3.1.1.29)	fig|6666666.229861.peg.1185
Protein Metabolism	Protein biosynthesis	Translation termination factors bacterial	Peptide deformylase (EC 3.5.1.88)	fig|6666666.229861.peg.2095
Protein Metabolism	Protein biosynthesis	Translation termination factors bacterial	tmRNA-binding protein SmpB	fig|6666666.229861.peg.1933
Protein Metabolism	Protein biosynthesis	Translation termination factors bacterial	Peptide chain release factor 1	fig|6666666.229861.peg.180
Protein Metabolism	Protein biosynthesis	Translation termination factors bacterial	Methionine aminopeptidase (EC 3.4.11.18)	fig|6666666.229861.peg.2182
Protein Metabolism	Protein biosynthesis	Translation termination factors bacterial	Peptide chain release factor 2	fig|6666666.229861.peg.2357
Protein Metabolism	Protein biosynthesis	Universal GTPases	Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1)	fig|6666666.229861.peg.2401
Protein Metabolism	Protein biosynthesis	Universal GTPases	GTP-binding protein EngA	fig|6666666.229861.peg.548
Protein Metabolism	Protein biosynthesis	Universal GTPases	GTP-binding protein HflX	fig|6666666.229861.peg.440
Protein Metabolism	Protein biosynthesis	Universal GTPases	Translation elongation factor G	fig|6666666.229861.peg.799, <br>fig|6666666.229861.peg.1561
Protein Metabolism	Protein biosynthesis	Universal GTPases	Signal recognition particle receptor protein FtsY (=alpha subunit) (TC 3.A.5.1.1)	fig|6666666.229861.peg.2354
Protein Metabolism	Protein biosynthesis	Universal GTPases	GTP-binding protein Era	fig|6666666.229861.peg.1094
Protein Metabolism	Protein biosynthesis	Universal GTPases	GTPase and tRNA-U34 5-formylation enzyme TrmE	fig|6666666.229861.peg.2482
Protein Metabolism	Protein biosynthesis	Universal GTPases	Translation elongation factor LepA	fig|6666666.229861.peg.1092
Protein Metabolism	Protein biosynthesis	Universal GTPases	Translation elongation factor Tu	fig|6666666.229861.peg.1289
Protein Metabolism	Protein biosynthesis	Universal GTPases	GTP-binding and nucleic acid-binding protein YchF	fig|6666666.229861.peg.814
Protein Metabolism	Protein biosynthesis	Universal GTPases	Translation initiation factor 2	fig|6666666.229861.peg.1617
Protein Metabolism	Protein biosynthesis	Universal GTPases	Ribosome small subunit-stimulated GTPase EngC	fig|6666666.229861.peg.1914
Protein Metabolism	Protein biosynthesis	Universal GTPases	GTP-binding protein EngB	fig|6666666.229861.peg.254
Protein Metabolism	Protein biosynthesis	Universal GTPases	GTP-binding protein Obg	fig|6666666.229861.peg.2195, <br>fig|6666666.229861.peg.2383
Protein Metabolism	Protein biosynthesis	tRNA aminoacylation, His	Histidyl-tRNA synthetase (EC 6.1.1.21)	fig|6666666.229861.peg.1907
Protein Metabolism	Protein biosynthesis	tRNA aminoacylation, Asp and Asn	Aspartyl-tRNA(Asn) amidotransferase subunit C (EC 6.3.5.6)	fig|6666666.229861.peg.1073
Protein Metabolism	Protein biosynthesis	tRNA aminoacylation, Asp and Asn	Aspartyl-tRNA(Asn) amidotransferase subunit B (EC 6.3.5.6)	fig|6666666.229861.peg.1071
Protein Metabolism	Protein biosynthesis	tRNA aminoacylation, Asp and Asn	Aspartyl-tRNA synthetase (EC 6.1.1.12)	fig|6666666.229861.peg.2030
Protein Metabolism	Protein biosynthesis	tRNA aminoacylation, Asp and Asn	Asparaginyl-tRNA synthetase (EC 6.1.1.22)	fig|6666666.229861.peg.1495
Protein Metabolism	Protein biosynthesis	tRNA aminoacylation, Asp and Asn	Aspartyl-tRNA(Asn) amidotransferase subunit A (EC 6.3.5.6)	fig|6666666.229861.peg.1072
Protein Metabolism	Protein biosynthesis	Translation elongation factors bacterial	Translation elongation factor G	fig|6666666.229861.peg.799, <br>fig|6666666.229861.peg.1561
Protein Metabolism	Protein biosynthesis	Translation elongation factors bacterial	Translation elongation factor LepA	fig|6666666.229861.peg.1092
Protein Metabolism	Protein biosynthesis	Translation elongation factors bacterial	Translation elongation factor Tu	fig|6666666.229861.peg.1289
Protein Metabolism	Protein biosynthesis	Translation elongation factors bacterial	Translation elongation factor Ts	fig|6666666.229861.peg.44
Protein Metabolism	Protein biosynthesis	Translation elongation factors bacterial	Translation elongation factor P	fig|6666666.229861.peg.1488
Protein Metabolism	Protein biosynthesis	Translation elongation factors bacterial	Translation elongation factor G-related protein	fig|6666666.229861.peg.1466
Protein Metabolism	Protein biosynthesis	tRNAs	tRNA-Phe-GAA	fig|6666666.229861.rna.39
Protein Metabolism	Protein biosynthesis	tRNAs	tRNA-Leu-CAG	fig|6666666.229861.rna.25
Protein Metabolism	Protein biosynthesis	tRNAs	tRNA-Pro-GGG	fig|6666666.229861.rna.41
Protein Metabolism	Protein biosynthesis	tRNAs	tRNA-Val-GAC	fig|6666666.229861.rna.42
Protein Metabolism	Protein biosynthesis	tRNAs	tRNA-Trp-CCA	fig|6666666.229861.rna.2
Protein Metabolism	Protein biosynthesis	tRNAs	tRNA-Leu-CAA	fig|6666666.229861.rna.7
Protein Metabolism	Protein biosynthesis	tRNAs	tRNA-Gly-GCC	fig|6666666.229861.rna.38
Protein Metabolism	Protein biosynthesis	tRNAs	tRNA-Leu-GAG	fig|6666666.229861.rna.40
Protein Metabolism	Protein biosynthesis	tRNAs	tRNA-Ala-CGC	fig|6666666.229861.rna.24
Protein Metabolism	Protein biosynthesis	tRNAs	tRNA-Ser-GGA	fig|6666666.229861.rna.13
Protein Metabolism	Protein biosynthesis	tRNAs	tRNA-Ala-GGC	fig|6666666.229861.rna.9
Protein Metabolism	Protein biosynthesis	tRNAs	tRNA-Pro-CGG	fig|6666666.229861.rna.5
Protein Metabolism	Protein biosynthesis	tRNAs	tRNA-Arg-GCG	fig|6666666.229861.rna.15
Protein Metabolism	Protein biosynthesis	tRNAs	tRNA-Cys-GCA	fig|6666666.229861.rna.12
Protein Metabolism	Protein biosynthesis	tRNA aminoacylation, Lys	Lysyl-tRNA synthetase (class I) (EC 6.1.1.6)	fig|6666666.229861.peg.236
Protein Metabolism	Protein biosynthesis	tRNA aminoacylation, Thr	Threonyl-tRNA synthetase (EC 6.1.1.3)	fig|6666666.229861.peg.1600
Protein Metabolism	Protein biosynthesis	tRNA aminoacylation, Pro	Prolyl-tRNA synthetase (EC 6.1.1.15), bacterial type	fig|6666666.229861.peg.2516
Protein Metabolism	Protein biosynthesis	tRNA aminoacylation, Pro	tRNA proofreading protein STM4549	fig|6666666.229861.peg.66
Protein Metabolism	Protein biosynthesis	Translation elongation factor G family	Translation elongation factor G	fig|6666666.229861.peg.799, <br>fig|6666666.229861.peg.1561
Protein Metabolism	Protein biosynthesis	Translation elongation factor G family	Translation elongation factor G-related protein	fig|6666666.229861.peg.1466
Protein Metabolism	Protein biosynthesis	tRNA aminoacylation, Glu and Gln	Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.7)	fig|6666666.229861.peg.1072
Protein Metabolism	Protein biosynthesis	tRNA aminoacylation, Glu and Gln	Glutamyl-tRNA synthetase (EC 6.1.1.17)	fig|6666666.229861.peg.671
Protein Metabolism	Protein biosynthesis	tRNA aminoacylation, Glu and Gln	Glutamyl-tRNA(Gln) amidotransferase subunit B (EC 6.3.5.7)	fig|6666666.229861.peg.1071
Protein Metabolism	Protein biosynthesis	tRNA aminoacylation, Glu and Gln	Glutamyl-tRNA(Gln) synthetase (EC 6.1.1.24)	fig|6666666.229861.peg.671
Protein Metabolism	Protein biosynthesis	tRNA aminoacylation, Glu and Gln	Glutamyl-tRNA(Gln) amidotransferase subunit C (EC 6.3.5.7)	fig|6666666.229861.peg.1073
Protein Metabolism	Protein biosynthesis	tRNA aminoacylation, Ser	Seryl-tRNA synthetase (EC 6.1.1.11)	fig|6666666.229861.peg.2587
Protein Metabolism	Protein biosynthesis	tRNA aminoacylation, Tyr	Tyrosyl-tRNA synthetase (EC 6.1.1.1)	fig|6666666.229861.peg.1378
Protein Metabolism	Protein biosynthesis	tRNA aminoacylation, Leu	Leucyl-tRNA synthetase (EC 6.1.1.4)	fig|6666666.229861.peg.37
Protein Metabolism	Protein biosynthesis	tRNA aminoacylation, Phe	Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)	fig|6666666.229861.peg.578
Protein Metabolism	Protein biosynthesis	tRNA aminoacylation, Phe	Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)	fig|6666666.229861.peg.1119
Protein Metabolism	Protein processing and modification	Translation elongation factor P lysylation	Translation elongation factor P Lys34:lysine transferase	fig|6666666.229861.peg.2563
Protein Metabolism	Protein processing and modification	Translation elongation factor P lysylation	Translation elongation factor P	fig|6666666.229861.peg.1488
Protein Metabolism	Protein processing and modification	Lipoprotein Biosynthesis	Apolipoprotein N-acyltransferase (EC 2.3.1.-)	fig|6666666.229861.peg.2155, <br>fig|6666666.229861.peg.2580
Protein Metabolism	Protein processing and modification	Lipoprotein Biosynthesis	Lipoprotein signal peptidase (EC 3.4.23.36)	fig|6666666.229861.peg.292
Protein Metabolism	Protein processing and modification	Lipoprotein Biosynthesis	Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-)	fig|6666666.229861.peg.504, <br>fig|6666666.229861.peg.1863
Protein Metabolism	Protein processing and modification	Signal peptidase	Signal peptidase I (EC 3.4.21.89)	fig|6666666.229861.peg.1785, <br>fig|6666666.229861.peg.1934, <br>fig|6666666.229861.peg.2515
Protein Metabolism	Protein processing and modification	Signal peptidase	Lipoprotein signal peptidase (EC 3.4.23.36)	fig|6666666.229861.peg.292
Protein Metabolism	Protein processing and modification	Ribosomal protein S12p Asp methylthiotransferase	Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase	fig|6666666.229861.peg.287
Protein Metabolism	Protein processing and modification	Ribosomal protein S12p Asp methylthiotransferase	SSU ribosomal protein S12p (S23e)	fig|6666666.229861.peg.1559
Protein Metabolism	Protein processing and modification	G3E family of P-loop GTPases (metallocenter biosynthesis)	[NiFe] hydrogenase nickel incorporation protein HypA	fig|6666666.229861.peg.2472
Protein Metabolism	Protein processing and modification	G3E family of P-loop GTPases (metallocenter biosynthesis)	FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8)	fig|6666666.229861.peg.1117
Protein Metabolism	Protein processing and modification	G3E family of P-loop GTPases (metallocenter biosynthesis)	[NiFe] hydrogenase nickel incorporation-associated protein HypB	fig|6666666.229861.peg.2471
Protein Metabolism	Protein processing and modification	Peptide methionine sulfoxide reductase	Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11)	fig|6666666.229861.peg.1255
Protein Metabolism	Protein processing and modification	Peptide methionine sulfoxide reductase	Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12)	fig|6666666.229861.peg.1255
Protein Metabolism	Protein degradation	Putative TldE-TldD proteolytic complex	TldE protein, part of TldE/TldD proteolytic complex	fig|6666666.229861.peg.1766, <br>fig|6666666.229861.peg.1783
Protein Metabolism	Protein degradation	Putative TldE-TldD proteolytic complex	TldD protein, part of TldE/TldD proteolytic complex	fig|6666666.229861.peg.1767, <br>fig|6666666.229861.peg.1782
Protein Metabolism	Protein degradation	Putative TldE-TldD proteolytic complex	TldD family protein, Beta/Gamma-proteobacterial subgroup	fig|6666666.229861.peg.100
Protein Metabolism	Protein degradation	Putative TldE-TldD proteolytic complex	TldE/PmbA family protein, Beta/Gamma-proteobacterial subgroup	fig|6666666.229861.peg.99
Protein Metabolism	Protein degradation	Protein degradation	Leucyl/phenylalanyl-tRNA--protein transferase (EC 2.3.2.6)	fig|6666666.229861.peg.2436
Protein Metabolism	Protein degradation	Protein degradation	Deblocking aminopeptidase (EC 3.4.11.-)	fig|6666666.229861.peg.133, <br>fig|6666666.229861.peg.491
Protein Metabolism	Protein degradation	Aminopeptidases (EC 3.4.11.-)	Xaa-Pro aminopeptidase (EC 3.4.11.9)	fig|6666666.229861.peg.1949
Protein Metabolism	Protein degradation	Aminopeptidases (EC 3.4.11.-)	Aminopeptidase S (Leu, Val, Phe, Tyr preference) (EC 3.4.11.24)	fig|6666666.229861.peg.35
Protein Metabolism	Protein degradation	Aminopeptidases (EC 3.4.11.-)	Cytosol aminopeptidase PepA (EC 3.4.11.1)	fig|6666666.229861.peg.809
Protein Metabolism	Protein degradation	Metallocarboxypeptidases (EC 3.4.17.-)	D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4)	fig|6666666.229861.peg.1175, <br>fig|6666666.229861.peg.1494
Protein Metabolism	Protein degradation	Dipeptidases (EC 3.4.13.-)	Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3)	fig|6666666.229861.peg.2522
Protein Metabolism	Protein degradation	Proteasome bacterial	ATP-dependent Clp protease ATP-binding subunit ClpX	fig|6666666.229861.peg.2121
Protein Metabolism	Protein degradation	Proteasome bacterial	ATP-dependent protease La (EC 3.4.21.53) Type II	fig|6666666.229861.peg.1529
Protein Metabolism	Protein degradation	Proteasome bacterial	Site-specific tyrosine recombinase	fig|6666666.229861.peg.1680
Protein Metabolism	Protein degradation	Proteasome bacterial	ATP-dependent hsl protease ATP-binding subunit HslU	fig|6666666.229861.peg.1682
Protein Metabolism	Protein degradation	Proteasome bacterial	ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92)	fig|6666666.229861.peg.85, <br>fig|6666666.229861.peg.2120
Protein Metabolism	Protein degradation	Proteasome bacterial	ATP-dependent protease HslV (EC 3.4.25.-)	fig|6666666.229861.peg.1681
Protein Metabolism	Protein degradation	Proteasome bacterial	ATP-dependent protease La (EC 3.4.21.53) Type I	fig|6666666.229861.peg.1213
Protein Metabolism	Protein degradation	Serine endopeptidase (EC 3.4.21.-)	Prolyl endopeptidase (EC 3.4.21.26)	fig|6666666.229861.peg.1667
Protein Metabolism	Protein degradation	Omega peptidases (EC 3.4.19.-)	Acylamino-acid-releasing enzyme (EC 3.4.19.1)	fig|6666666.229861.peg.564
Protein Metabolism	Protein degradation	Omega peptidases (EC 3.4.19.-)	Pyrrolidone-carboxylate peptidase (EC 3.4.19.3)	fig|6666666.229861.peg.643
Protein Metabolism	Protein degradation	Proteolysis in bacteria, ATP-dependent	DNA repair protein RadA	fig|6666666.229861.peg.205
Protein Metabolism	Protein degradation	Proteolysis in bacteria, ATP-dependent	ATP-dependent Clp protease ATP-binding subunit ClpX	fig|6666666.229861.peg.2121
Protein Metabolism	Protein degradation	Proteolysis in bacteria, ATP-dependent	ATP-dependent Clp protease ATP-binding subunit ClpA	fig|6666666.229861.peg.2435
Protein Metabolism	Protein degradation	Proteolysis in bacteria, ATP-dependent	ATP-dependent protease La (EC 3.4.21.53) Type II	fig|6666666.229861.peg.1529
Protein Metabolism	Protein degradation	Proteolysis in bacteria, ATP-dependent	Outer membrane stress sensor protease DegS	fig|6666666.229861.peg.2581
Protein Metabolism	Protein degradation	Proteolysis in bacteria, ATP-dependent	Nucleotide excision repair protein, with UvrB/UvrC motif	fig|6666666.229861.peg.2349
Protein Metabolism	Protein degradation	Proteolysis in bacteria, ATP-dependent	ClpB protein	fig|6666666.229861.peg.26, <br>fig|6666666.229861.peg.2347
Protein Metabolism	Protein degradation	Proteolysis in bacteria, ATP-dependent	ATP-dependent protease HslV (EC 3.4.25.-)	fig|6666666.229861.peg.1681
Protein Metabolism	Protein degradation	Proteolysis in bacteria, ATP-dependent	ATP-dependent protease La (EC 3.4.21.53) Type I	fig|6666666.229861.peg.1213
Protein Metabolism	Protein degradation	Proteolysis in bacteria, ATP-dependent	ATP-dependent Clp protease adaptor protein ClpS	fig|6666666.229861.peg.2434
Protein Metabolism	Protein degradation	Proteolysis in bacteria, ATP-dependent	ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92)	fig|6666666.229861.peg.85, <br>fig|6666666.229861.peg.2120
Protein Metabolism	Protein degradation	Proteolysis in bacteria, ATP-dependent	ATP-dependent hsl protease ATP-binding subunit HslU	fig|6666666.229861.peg.1682
Cell Division and Cell Cycle	Checkpoint control	Bacterial checkpoint-control-related cluster	Diadenylate cyclase spyDAC	fig|6666666.229861.peg.1104
Cell Division and Cell Cycle	Checkpoint control	Bacterial checkpoint-control-related cluster	Uncharacterized secreted protein associated with spyDAC	fig|6666666.229861.peg.461, <br>fig|6666666.229861.peg.1103
Cell Division and Cell Cycle	Checkpoint control	Bacterial checkpoint-control-related cluster	Phosphoglucosamine mutase (EC 5.4.2.10)	fig|6666666.229861.peg.1382
Cell Division and Cell Cycle	Checkpoint control	Bacterial checkpoint-control-related cluster	Bacterial checkpoint controller DisA with nucleotide-binding domain	fig|6666666.229861.peg.1104
Cell Division and Cell Cycle	Cell Division and Cell Cycle - no subcategory	YgjD and YeaZ	TsaD/Kae1/Qri7 protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA	fig|6666666.229861.peg.192
Cell Division and Cell Cycle	Cell Division and Cell Cycle - no subcategory	YgjD and YeaZ	TsaB protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA	fig|6666666.229861.peg.1937
Cell Division and Cell Cycle	Cell Division and Cell Cycle - no subcategory	Macromolecular synthesis operon	TsaD/Kae1/Qri7 protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA	fig|6666666.229861.peg.192
Cell Division and Cell Cycle	Cell Division and Cell Cycle - no subcategory	Macromolecular synthesis operon	RNA polymerase sigma factor RpoD	fig|6666666.229861.peg.543, <br>fig|6666666.229861.peg.1456, <br>fig|6666666.229861.peg.1815
Cell Division and Cell Cycle	Cell Division and Cell Cycle - no subcategory	Macromolecular synthesis operon	DNA primase (EC 2.7.7.-)	fig|6666666.229861.peg.1814
Cell Division and Cell Cycle	Cell Division and Cell Cycle - no subcategory	Macromolecular synthesis operon	SSU ribosomal protein S21p	fig|6666666.229861.peg.164
Cell Division and Cell Cycle	Cell Division and Cell Cycle - no subcategory	Bacterial Cytoskeleton	Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129)	fig|6666666.229861.peg.1786
Cell Division and Cell Cycle	Cell Division and Cell Cycle - no subcategory	Bacterial Cytoskeleton	Rod shape-determining protein RodA	fig|6666666.229861.peg.1822
Cell Division and Cell Cycle	Cell Division and Cell Cycle - no subcategory	Bacterial Cytoskeleton	Cell division protein FtsW	fig|6666666.229861.peg.1672
Cell Division and Cell Cycle	Cell Division and Cell Cycle - no subcategory	Bacterial Cytoskeleton	Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage	fig|6666666.229861.peg.1930
Cell Division and Cell Cycle	Cell Division and Cell Cycle - no subcategory	Bacterial Cytoskeleton	Chromosome (plasmid) partitioning protein ParB	fig|6666666.229861.peg.1151, <br>fig|6666666.229861.peg.2489
Cell Division and Cell Cycle	Cell Division and Cell Cycle - no subcategory	Bacterial Cytoskeleton	Cell division protein FtsZ (EC 3.4.24.-)	fig|6666666.229861.peg.1675
Cell Division and Cell Cycle	Cell Division and Cell Cycle - no subcategory	Bacterial Cytoskeleton	Rod shape-determining protein MreD	fig|6666666.229861.peg.1820
Cell Division and Cell Cycle	Cell Division and Cell Cycle - no subcategory	Bacterial Cytoskeleton	Cell division protein FtsL	fig|6666666.229861.peg.1670
Cell Division and Cell Cycle	Cell Division and Cell Cycle - no subcategory	Bacterial Cytoskeleton	Rod shape-determining protein MreB	fig|6666666.229861.peg.1818
Cell Division and Cell Cycle	Cell Division and Cell Cycle - no subcategory	Bacterial Cytoskeleton	Cell division protein FtsA	fig|6666666.229861.peg.1674
Cell Division and Cell Cycle	Cell Division and Cell Cycle - no subcategory	Bacterial Cytoskeleton	Rod shape-determining protein MreC	fig|6666666.229861.peg.1819
Cell Division and Cell Cycle	Cell Division and Cell Cycle - no subcategory	Bacterial Cytoskeleton	Cell division protein FtsK	fig|6666666.229861.peg.288, <br>fig|6666666.229861.peg.640
Cell Division and Cell Cycle	Cell Division and Cell Cycle - no subcategory	Bacterial Cytoskeleton	Cell division protein FtsQ	fig|6666666.229861.peg.1673
Cell Division and Cell Cycle	Cell Division and Cell Cycle - no subcategory	Bacterial Cytoskeleton	Septum formation protein Maf	fig|6666666.229861.peg.46
Cell Division and Cell Cycle	Cell Division and Cell Cycle - no subcategory	Bacterial Cytoskeleton	Cell division protein MraZ	fig|6666666.229861.peg.1668
Cell Division and Cell Cycle	Cell Division and Cell Cycle - no subcategory	Bacterial Cytoskeleton	Chromosome (plasmid) partitioning protein ParA	fig|6666666.229861.peg.1152
Motility and Chemotaxis	Flagellar motility in Prokaryota	Flagellum in Campylobacter	Flagellar basal-body rod protein FlgC	fig|6666666.229861.peg.1684
Motility and Chemotaxis	Flagellar motility in Prokaryota	Flagellum in Campylobacter	Flagellin protein FlaA	fig|6666666.229861.peg.1516, <br>fig|6666666.229861.peg.1943, <br>fig|6666666.229861.peg.1944
Motility and Chemotaxis	Flagellar motility in Prokaryota	Flagellum in Campylobacter	Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129)	fig|6666666.229861.peg.1786
Motility and Chemotaxis	Flagellar motility in Prokaryota	Flagellum in Campylobacter	Flagellar hook-basal body complex protein FliE	fig|6666666.229861.peg.1685
Motility and Chemotaxis	Flagellar motility in Prokaryota	Flagellum in Campylobacter	Flagellar basal-body rod protein FlgB	fig|6666666.229861.peg.1683
Motility and Chemotaxis	Flagellar motility in Prokaryota	Flagellum	Flagellar synthesis regulator FleN	fig|6666666.229861.peg.358
Motility and Chemotaxis	Flagellar motility in Prokaryota	Flagellum	RNA polymerase sigma factor RpoD	fig|6666666.229861.peg.543, <br>fig|6666666.229861.peg.1456, <br>fig|6666666.229861.peg.1815
Motility and Chemotaxis	Flagellar motility in Prokaryota	Flagellum	Flagellar biosynthesis protein FliL	fig|6666666.229861.peg.20, <br>fig|6666666.229861.peg.454
Motility and Chemotaxis	Flagellar motility in Prokaryota	Flagellum	Flagellar hook-associated protein FliD	fig|6666666.229861.peg.1941
Motility and Chemotaxis	Flagellar motility in Prokaryota	Flagellum	Flagellar hook-associated protein FlgK	fig|6666666.229861.peg.50
Motility and Chemotaxis	Flagellar motility in Prokaryota	Flagellum	Flagellar assembly protein FliH	fig|6666666.229861.peg.1688
Motility and Chemotaxis	Flagellar motility in Prokaryota	Flagellum	Flagellar biosynthesis protein FliR	fig|6666666.229861.peg.526
Motility and Chemotaxis	Flagellar motility in Prokaryota	Flagellum	Flagellin protein FlaG	fig|6666666.229861.peg.1942
Motility and Chemotaxis	Flagellar motility in Prokaryota	Flagellum	Flagellar biosynthesis protein FliP	fig|6666666.229861.peg.450
Motility and Chemotaxis	Flagellar motility in Prokaryota	Flagellum	Flagellar hook protein FlgE	fig|6666666.229861.peg.458
Motility and Chemotaxis	Flagellar motility in Prokaryota	Flagellum	Flagellar M-ring protein FliF	fig|6666666.229861.peg.1686
Motility and Chemotaxis	Flagellar motility in Prokaryota	Flagellum	Flagellar basal-body rod modification protein FlgD	fig|6666666.229861.peg.459
Motility and Chemotaxis	Flagellar motility in Prokaryota	Flagellum	Flagellar basal-body rod protein FlgC	fig|6666666.229861.peg.1684
Motility and Chemotaxis	Flagellar motility in Prokaryota	Flagellum	Flagellar biosynthesis protein FlhB	fig|6666666.229861.peg.527, <br>fig|6666666.229861.peg.2582
Motility and Chemotaxis	Flagellar motility in Prokaryota	Flagellum	Flagellar hook-basal body complex protein FliE	fig|6666666.229861.peg.1685
Motility and Chemotaxis	Flagellar motility in Prokaryota	Flagellum	Flagellar basal-body rod protein FlgB	fig|6666666.229861.peg.1683
Motility and Chemotaxis	Flagellar motility in Prokaryota	Flagellum	Flagellar biosynthesis protein FliZ	fig|6666666.229861.peg.451
Motility and Chemotaxis	Flagellar motility in Prokaryota	Flagellum	Flagellar biosynthesis protein FliS	fig|6666666.229861.peg.588
Motility and Chemotaxis	Flagellar motility in Prokaryota	Flagellum	Flagellar basal-body rod protein FlgF	fig|6666666.229861.peg.1518
Motility and Chemotaxis	Flagellar motility in Prokaryota	Flagellum	Flagellin protein FlaA	fig|6666666.229861.peg.1516, <br>fig|6666666.229861.peg.1943, <br>fig|6666666.229861.peg.1944
Motility and Chemotaxis	Flagellar motility in Prokaryota	Flagellum	Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-)	fig|6666666.229861.peg.1520
Motility and Chemotaxis	Flagellar motility in Prokaryota	Flagellum	Flagellar motor switch protein FliN	fig|6666666.229861.peg.452
Motility and Chemotaxis	Flagellar motility in Prokaryota	Flagellum	Flagellar protein FlbB	fig|6666666.229861.peg.1803
Motility and Chemotaxis	Flagellar motility in Prokaryota	Flagellum	Flagellar basal-body rod protein FlgG	fig|6666666.229861.peg.1519
Motility and Chemotaxis	Flagellar motility in Prokaryota	Flagellum	RNA polymerase sigma-54 factor RpoN	fig|6666666.229861.peg.98
Motility and Chemotaxis	Flagellar motility in Prokaryota	Flagellum	Flagellar motor rotation protein MotB	fig|6666666.229861.peg.455
Motility and Chemotaxis	Flagellar motility in Prokaryota	Flagellum	Flagellar protein FliJ	fig|6666666.229861.peg.1690
Motility and Chemotaxis	Flagellar motility in Prokaryota	Flagellum	Flagellar hook-associated protein FlgL	fig|6666666.229861.peg.51
Motility and Chemotaxis	Flagellar motility in Prokaryota	Flagellum	Flagellum-specific ATP synthase FliI	fig|6666666.229861.peg.1689
Motility and Chemotaxis	Flagellar motility in Prokaryota	Flagellum	Flagellar biosynthesis protein FlhA	fig|6666666.229861.peg.528
Motility and Chemotaxis	Flagellar motility in Prokaryota	Flagellum	Flagellar biosynthesis protein FliQ	fig|6666666.229861.peg.525
Motility and Chemotaxis	Flagellar motility in Prokaryota	Flagellum	Flagellar hook-length control protein FliK	fig|6666666.229861.peg.460
Motility and Chemotaxis	Flagellar motility in Prokaryota	Flagellum	Flagellar motor switch protein FliM	fig|6666666.229861.peg.453
Motility and Chemotaxis	Flagellar motility in Prokaryota	Flagellum	Flagellar biosynthesis protein FlhF	fig|6666666.229861.peg.359
Motility and Chemotaxis	Flagellar motility in Prokaryota	Flagellum	Flagellar motor rotation protein MotA	fig|6666666.229861.peg.456
Motility and Chemotaxis	Flagellar motility in Prokaryota	Flagellum	Flagellar motor switch protein FliG	fig|6666666.229861.peg.1687, <br>fig|6666666.229861.peg.1761
Motility and Chemotaxis	Flagellar motility in Prokaryota	Flagellum	Flagellar protein FlbD	fig|6666666.229861.peg.457
Motility and Chemotaxis	Flagellar motility in Prokaryota	Flagellar motility	Flagellar synthesis regulator FleN	fig|6666666.229861.peg.358
Motility and Chemotaxis	Flagellar motility in Prokaryota	Flagellar motility	Flagellar motor switch protein FliM	fig|6666666.229861.peg.453
Motility and Chemotaxis	Flagellar motility in Prokaryota	Flagellar motility	Flagellar motor switch protein FliN	fig|6666666.229861.peg.452
Motility and Chemotaxis	Flagellar motility in Prokaryota	Flagellar motility	Flagellar biosynthesis protein FlhB	fig|6666666.229861.peg.527, <br>fig|6666666.229861.peg.2582
Motility and Chemotaxis	Flagellar motility in Prokaryota	Flagellar motility	Signal transduction histidine kinase CheA (EC 2.7.3.-)	fig|6666666.229861.peg.1958
Motility and Chemotaxis	Flagellar motility in Prokaryota	Flagellar motility	Flagellar motor rotation protein MotA	fig|6666666.229861.peg.456
Motility and Chemotaxis	Flagellar motility in Prokaryota	Flagellar motility	Flagellar biosynthesis protein FliR	fig|6666666.229861.peg.526
Motility and Chemotaxis	Flagellar motility in Prokaryota	Flagellar motility	Flagellar biosynthesis protein FlhF	fig|6666666.229861.peg.359
Motility and Chemotaxis	Flagellar motility in Prokaryota	Flagellar motility	RNA polymerase sigma-54 factor RpoN	fig|6666666.229861.peg.98
Motility and Chemotaxis	Flagellar motility in Prokaryota	Flagellar motility	Flagellar motor rotation protein MotB	fig|6666666.229861.peg.455
Motility and Chemotaxis	Flagellar motility in Prokaryota	Flagellar motility	Flagellum-specific ATP synthase FliI	fig|6666666.229861.peg.1689
Motility and Chemotaxis	Flagellar motility in Prokaryota	Flagellar motility	Flagellar biosynthesis protein FlhA	fig|6666666.229861.peg.528
Motility and Chemotaxis	Flagellar motility in Prokaryota	Flagellar motility	Flagellar basal-body rod modification protein FlgD	fig|6666666.229861.peg.459
Motility and Chemotaxis	Flagellar motility in Prokaryota	Flagellar motility	Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY	fig|6666666.229861.peg.1961, <br>fig|6666666.229861.peg.2284
Regulation and Cell signaling	Regulation and Cell signaling - no subcategory	cAMP signaling in bacteria	cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases	fig|6666666.229861.peg.1953
Regulation and Cell signaling	Regulation and Cell signaling - no subcategory	cAMP signaling in bacteria	Hydrolase, alpha/beta fold family functionally coupled to Phosphoribulokinase	fig|6666666.229861.peg.1395
Regulation and Cell signaling	Regulation and Cell signaling - no subcategory	cAMP signaling in bacteria	ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92)	fig|6666666.229861.peg.85, <br>fig|6666666.229861.peg.2120
Regulation and Cell signaling	Regulation and Cell signaling - no subcategory	cAMP signaling in bacteria	Adenylate cyclase (EC 4.6.1.1)	fig|6666666.229861.peg.621, <br>fig|6666666.229861.peg.672, <br>fig|6666666.229861.peg.907, <br>fig|6666666.229861.peg.917, <br>fig|6666666.229861.peg.1453, <br>fig|6666666.229861.peg.2299
Regulation and Cell signaling	Regulation and Cell signaling - no subcategory	cAMP signaling in bacteria	Adenine phosphoribosyltransferase (EC 2.4.2.7)	fig|6666666.229861.peg.2132
Regulation and Cell signaling	Regulation and Cell signaling - no subcategory	LysR-family proteins in Escherichia coli	Chromosome initiation inhibitor	fig|6666666.229861.peg.906
Regulation and Cell signaling	Regulation and Cell signaling - no subcategory	HPr catabolite repression system	Catabolite repression HPr-like protein Crh	fig|6666666.229861.peg.1768
Regulation and Cell signaling	Regulation and Cell signaling - no subcategory	HPr catabolite repression system	HPr kinase/phosphorylase (EC 2.7.1.-) (EC 2.7.4.-)	fig|6666666.229861.peg.1769
Regulation and Cell signaling	Regulation and Cell signaling - no subcategory	Cell envelope-associated LytR-CpsA-Psr transcriptional attenuators	Cell envelope-associated transcriptional attenuator LytR-CpsA-Psr, subfamily S (as in PMID19099556)	fig|6666666.229861.peg.2193
Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems	MazEF toxin-antitoxing (programmed cell death) system	Programmed cell death toxin YdcE	fig|6666666.229861.peg.244
Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems	MazEF toxin-antitoxing (programmed cell death) system	Programmed cell death antitoxin YdcD	fig|6666666.229861.peg.243
Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems	Toxin-antitoxin replicon stabilization systems	RelE/StbE replicon stabilization toxin	fig|6666666.229861.peg.419, <br>fig|6666666.229861.peg.2291
Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems	Toxin-antitoxin replicon stabilization systems	VapC toxin protein	fig|6666666.229861.peg.1205, <br>fig|6666666.229861.peg.2438
Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems	Toxin-antitoxin replicon stabilization systems	RelB/StbD replicon stabilization protein (antitoxin to RelE/StbE)	fig|6666666.229861.peg.2292
Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems	Toxin-antitoxin replicon stabilization systems	YafQ toxin protein	fig|6666666.229861.peg.812, <br>fig|6666666.229861.peg.1005
Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems	Toxin-antitoxin replicon stabilization systems	DNA-damage-inducible protein J	fig|6666666.229861.peg.204, <br>fig|6666666.229861.peg.811, <br>fig|6666666.229861.peg.1006, <br>fig|6666666.229861.peg.1207, <br>fig|6666666.229861.peg.2085
Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems	Toxin-antitoxin replicon stabilization systems	TTE0858 replicon stabilization protein (antitoxin to TTE0859)	fig|6666666.229861.peg.418
Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems	Toxin-antitoxin replicon stabilization systems	VapB protein (antitoxin to VapC)	fig|6666666.229861.peg.2437
Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems	Toxin-antitoxin replicon stabilization systems	HigA protein (antitoxin to HigB)	fig|6666666.229861.peg.938, <br>fig|6666666.229861.peg.2096
Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems	Toxin-antitoxin replicon stabilization systems	YefM protein (antitoxin to YoeB)	fig|6666666.229861.peg.255
Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems	Phd-Doc, YdcE-YdcD toxin-antitoxin (programmed cell death) systems	Programmed cell death toxin YdcE	fig|6666666.229861.peg.244
Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems	Phd-Doc, YdcE-YdcD toxin-antitoxin (programmed cell death) systems	Programmed cell death toxin MazF like	fig|6666666.229861.peg.219
Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems	Phd-Doc, YdcE-YdcD toxin-antitoxin (programmed cell death) systems	Prevent host death protein, Phd antitoxin	fig|6666666.229861.peg.2541
Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems	Phd-Doc, YdcE-YdcD toxin-antitoxin (programmed cell death) systems	Death on curing protein, Doc toxin	fig|6666666.229861.peg.29, <br>fig|6666666.229861.peg.2084, <br>fig|6666666.229861.peg.2217, <br>fig|6666666.229861.peg.2542
Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems	Phd-Doc, YdcE-YdcD toxin-antitoxin (programmed cell death) systems	Programmed cell death antitoxin YdcD	fig|6666666.229861.peg.243
DNA Metabolism	DNA repair	Uracil-DNA glycosylase	Uracil-DNA glycosylase, family 4	fig|6666666.229861.peg.182
DNA Metabolism	DNA repair	Uracil-DNA glycosylase	G:T/U mismatch-specific uracil/thymine DNA-glycosylase	fig|6666666.229861.peg.2065
DNA Metabolism	DNA repair	DNA repair, bacterial MutL-MutS system	Recombination inhibitory protein MutS2	fig|6666666.229861.peg.1915
DNA Metabolism	DNA repair	DNA repair, bacterial MutL-MutS system	DNA mismatch repair protein MutS	fig|6666666.229861.peg.279
DNA Metabolism	DNA repair	DNA repair, bacterial MutL-MutS system	DNA mismatch repair protein MutL	fig|6666666.229861.peg.2379
DNA Metabolism	DNA repair	DNA repair, UvrABC system	Excinuclease ABC subunit C	fig|6666666.229861.peg.169
DNA Metabolism	DNA repair	DNA repair, UvrABC system	Excinuclease ABC subunit A	fig|6666666.229861.peg.1523
DNA Metabolism	DNA repair	DNA repair, UvrABC system	Excinuclease ABC subunit B	fig|6666666.229861.peg.1834
DNA Metabolism	DNA repair	DNA repair, bacterial DinG and relatives	DinG family ATP-dependent helicase YoaA	fig|6666666.229861.peg.2303, <br>fig|6666666.229861.peg.2304
DNA Metabolism	DNA repair	2-phosphoglycolate salvage	Phosphoglycolate phosphatase (EC 3.1.3.18)	fig|6666666.229861.peg.390
DNA Metabolism	DNA repair	DNA repair system including RecA, MutS and a hypothetical protein	DNA mismatch repair protein MutS	fig|6666666.229861.peg.279
DNA Metabolism	DNA repair	DNA repair system including RecA, MutS and a hypothetical protein	RecA protein	fig|6666666.229861.peg.1390
DNA Metabolism	DNA repair	DNA repair, bacterial	Exonuclease SbcD	fig|6666666.229861.peg.637
DNA Metabolism	DNA repair	DNA repair, bacterial	SOS-response repressor and protease LexA (EC 3.4.21.88)	fig|6666666.229861.peg.703
DNA Metabolism	DNA repair	DNA repair, bacterial	DNA repair protein RadC	fig|6666666.229861.peg.1493
DNA Metabolism	DNA repair	DNA repair, bacterial	DNA-cytosine methyltransferase (EC 2.1.1.37)	fig|6666666.229861.peg.974
DNA Metabolism	DNA repair	DNA repair, bacterial	DNA polymerase IV (EC 2.7.7.7)	fig|6666666.229861.peg.1483
DNA Metabolism	DNA repair	DNA repair, bacterial	Exonuclease SbcC	fig|6666666.229861.peg.380, <br>fig|6666666.229861.peg.638
DNA Metabolism	DNA repair	DNA repair, bacterial	DNA-damage-inducible protein J	fig|6666666.229861.peg.204, <br>fig|6666666.229861.peg.811, <br>fig|6666666.229861.peg.1006, <br>fig|6666666.229861.peg.1207, <br>fig|6666666.229861.peg.2085
DNA Metabolism	DNA repair	DNA repair, bacterial	Single-stranded DNA-binding protein	fig|6666666.229861.peg.1231, <br>fig|6666666.229861.peg.2125
DNA Metabolism	DNA repair	DNA repair, bacterial	Exodeoxyribonuclease VII small subunit (EC 3.1.11.6)	fig|6666666.229861.peg.2378
DNA Metabolism	DNA repair	DNA repair, bacterial	DNA repair protein RadA	fig|6666666.229861.peg.205
DNA Metabolism	DNA repair	DNA repair, bacterial	Exodeoxyribonuclease VII large subunit (EC 3.1.11.6)	fig|6666666.229861.peg.1530
DNA Metabolism	DNA repair	DNA repair, bacterial	DNA repair protein RecN	fig|6666666.229861.peg.1775
DNA Metabolism	DNA repair	DNA repair, bacterial	G:T/U mismatch-specific uracil/thymine DNA-glycosylase	fig|6666666.229861.peg.2065
DNA Metabolism	DNA repair	DNA repair, bacterial	Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63)	fig|6666666.229861.peg.734
DNA Metabolism	DNA repair	DNA repair, bacterial	Methyl-directed repair DNA adenine methylase (EC 2.1.1.72)	fig|6666666.229861.peg.720, <br>fig|6666666.229861.peg.1737
DNA Metabolism	DNA repair	DNA repair, bacterial	RecA protein	fig|6666666.229861.peg.1390
DNA Metabolism	DNA repair	DNA repair, bacterial	Exodeoxyribonuclease III (EC 3.1.11.2)	fig|6666666.229861.peg.2183
DNA Metabolism	DNA repair	DNA repair, bacterial RecFOR pathway	ATP-dependent DNA helicase RecQ	fig|6666666.229861.peg.834
DNA Metabolism	DNA repair	DNA repair, bacterial RecFOR pathway	Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-)	fig|6666666.229861.peg.2492
DNA Metabolism	DNA repair	DNA repair, bacterial RecFOR pathway	Single-stranded DNA-binding protein	fig|6666666.229861.peg.1231, <br>fig|6666666.229861.peg.2125
DNA Metabolism	DNA repair	DNA repair, bacterial RecFOR pathway	Recombination protein RecR	fig|6666666.229861.peg.2006
DNA Metabolism	DNA repair	DNA repair, bacterial RecFOR pathway	RecA protein	fig|6666666.229861.peg.1390
DNA Metabolism	DNA repair	DNA repair, bacterial RecFOR pathway	DNA recombination and repair protein RecO	fig|6666666.229861.peg.933
DNA Metabolism	DNA repair	DNA repair, bacterial RecFOR pathway	DNA recombination and repair protein RecF	fig|6666666.229861.peg.741
DNA Metabolism	DNA repair	DNA repair, bacterial RecFOR pathway	ATP-dependent DNA helicase RecS (RecQ family)	fig|6666666.229861.peg.931
DNA Metabolism	DNA repair	DNA Repair Base Excision	Endonuclease III (EC 4.2.99.18)	fig|6666666.229861.peg.221
DNA Metabolism	DNA repair	DNA Repair Base Excision	Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-)	fig|6666666.229861.peg.2492
DNA Metabolism	DNA repair	DNA Repair Base Excision	DNA polymerase I (EC 2.7.7.7)	fig|6666666.229861.peg.2087
DNA Metabolism	DNA repair	DNA Repair Base Excision	DNA ligase (EC 6.5.1.2)	fig|6666666.229861.peg.1995
DNA Metabolism	DNA repair	DNA repair, bacterial UvrD and related helicases	ATP-dependent DNA helicase Rep	fig|6666666.229861.peg.1420
DNA Metabolism	DNA repair	DNA repair, bacterial UvrD and related helicases	ATP-dependent DNA helicase UvrD/PcrA	fig|6666666.229861.peg.33, <br>fig|6666666.229861.peg.550
DNA Metabolism	CRISPs	CRISPRs	CRISPR-associated protein, Csn1 family	fig|6666666.229861.peg.835
DNA Metabolism	CRISPs	CRISPRs	CRISPR-associated protein Cas2	fig|6666666.229861.peg.837
DNA Metabolism	CRISPs	CRISPRs	CRISPR-associated protein Cas1	fig|6666666.229861.peg.836
DNA Metabolism	CRISPs	CRISPRs	CRISPR-associated protein, Csn2 family	fig|6666666.229861.peg.838
DNA Metabolism	DNA Metabolism - no subcategory	Type I Restriction-Modification	Type I restriction-modification system, specificity subunit S (EC 3.1.21.3)	fig|6666666.229861.peg.432, <br>fig|6666666.229861.peg.2593, <br>fig|6666666.229861.peg.2594
DNA Metabolism	DNA Metabolism - no subcategory	Type I Restriction-Modification	Type I restriction-modification system, restriction subunit R (EC 3.1.21.3)	fig|6666666.229861.peg.436
DNA Metabolism	DNA Metabolism - no subcategory	Type I Restriction-Modification	Type I restriction-modification system, DNA-methyltransferase subunit M (EC 2.1.1.72)	fig|6666666.229861.peg.435, <br>fig|6666666.229861.peg.1438
DNA Metabolism	DNA Metabolism - no subcategory	Restriction-Modification System	Type I restriction-modification system, specificity subunit S (EC 3.1.21.3)	fig|6666666.229861.peg.432, <br>fig|6666666.229861.peg.2593, <br>fig|6666666.229861.peg.2594
DNA Metabolism	DNA Metabolism - no subcategory	Restriction-Modification System	Type III restriction-modification system methylation subunit (EC 2.1.1.72)	fig|6666666.229861.peg.563, <br>fig|6666666.229861.peg.1749
DNA Metabolism	DNA Metabolism - no subcategory	Restriction-Modification System	Type III restriction-modification system DNA endonuclease res (EC 3.1.21.5)	fig|6666666.229861.peg.1750
DNA Metabolism	DNA Metabolism - no subcategory	Restriction-Modification System	Type I restriction-modification system, restriction subunit R (EC 3.1.21.3)	fig|6666666.229861.peg.436
DNA Metabolism	DNA Metabolism - no subcategory	Restriction-Modification System	Type I restriction-modification system, DNA-methyltransferase subunit M (EC 2.1.1.72)	fig|6666666.229861.peg.435, <br>fig|6666666.229861.peg.1438
DNA Metabolism	DNA Metabolism - no subcategory	Restriction-Modification System	Putative DNA-binding protein in cluster with Type I restriction-modification system	fig|6666666.229861.peg.657, <br>fig|6666666.229861.peg.1141
DNA Metabolism	DNA Metabolism - no subcategory	YcfH	Putative deoxyribonuclease YcfH	fig|6666666.229861.peg.427, <br>fig|6666666.229861.peg.1486, <br>fig|6666666.229861.peg.2341
DNA Metabolism	DNA Metabolism - no subcategory	DNA structural proteins, bacterial	Chromosome partition protein smc	fig|6666666.229861.peg.1963
DNA Metabolism	DNA Metabolism - no subcategory	DNA structural proteins, bacterial	Integration host factor alpha/beta	fig|6666666.229861.peg.2156
DNA Metabolism	DNA replication	DNA topoisomerases, Type I, ATP-independent	DNA topoisomerase I (EC 5.99.1.2)	fig|6666666.229861.peg.1679
DNA Metabolism	DNA replication	DNA topoisomerases, Type II, ATP-dependent	DNA gyrase subunit B (EC 5.99.1.3)	fig|6666666.229861.peg.475
DNA Metabolism	DNA replication	DNA topoisomerases, Type II, ATP-dependent	DNA gyrase subunit A (EC 5.99.1.3)	fig|6666666.229861.peg.807
DNA Metabolism	DNA replication	DNA topoisomerases, Type II, ATP-dependent	Topoisomerase IV subunit B (EC 5.99.1.-)	fig|6666666.229861.peg.2540
DNA Metabolism	DNA replication	DNA topoisomerases, Type II, ATP-dependent	Topoisomerase IV subunit A (EC 5.99.1.-)	fig|6666666.229861.peg.2427
DNA Metabolism	DNA recombination	RuvABC plus a hypothetical	FIG000859: hypothetical protein YebC	fig|6666666.229861.peg.1954
DNA Metabolism	DNA recombination	RuvABC plus a hypothetical	Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)	fig|6666666.229861.peg.408
DNA Metabolism	DNA recombination	RuvABC plus a hypothetical	Holliday junction DNA helicase RuvA	fig|6666666.229861.peg.407
DNA Metabolism	DNA recombination	RuvABC plus a hypothetical	Holliday junction DNA helicase RuvB	fig|6666666.229861.peg.1108
DNA Metabolism	DNA uptake, competence	DNA processing cluster	Protein involved in catabolism of external DNA	fig|6666666.229861.peg.804
DNA Metabolism	DNA uptake, competence	DNA processing cluster	FIG000557: hypothetical protein co-occurring with RecR	fig|6666666.229861.peg.2005
DNA Metabolism	DNA uptake, competence	DNA processing cluster	Recombination protein RecR	fig|6666666.229861.peg.2006
DNA Metabolism	DNA uptake, competence	DNA processing cluster	DNA polymerase III subunits gamma and tau (EC 2.7.7.7)	fig|6666666.229861.peg.264
Fatty Acids, Lipids, and Isoprenoids	Phospholipids	Glycerolipid and Glycerophospholipid Metabolism in Bacteria	Alcohol dehydrogenase (EC 1.1.1.1)	fig|6666666.229861.peg.524
Fatty Acids, Lipids, and Isoprenoids	Phospholipids	Glycerolipid and Glycerophospholipid Metabolism in Bacteria	Glycerol-3-phosphate dehydrogenase (EC 1.1.5.3)	fig|6666666.229861.peg.317, <br>fig|6666666.229861.peg.603
Fatty Acids, Lipids, and Isoprenoids	Phospholipids	Glycerolipid and Glycerophospholipid Metabolism in Bacteria	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5)	fig|6666666.229861.peg.252, <br>fig|6666666.229861.peg.340, <br>fig|6666666.229861.peg.1831
Fatty Acids, Lipids, and Isoprenoids	Phospholipids	Glycerolipid and Glycerophospholipid Metabolism in Bacteria	Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)	fig|6666666.229861.peg.2402
Fatty Acids, Lipids, and Isoprenoids	Phospholipids	Glycerolipid and Glycerophospholipid Metabolism in Bacteria	Glycerol kinase (EC 2.7.1.30)	fig|6666666.229861.peg.1110
Fatty Acids, Lipids, and Isoprenoids	Phospholipids	Glycerolipid and Glycerophospholipid Metabolism in Bacteria	Aldehyde dehydrogenase (EC 1.2.1.3)	fig|6666666.229861.peg.199
Fatty Acids, Lipids, and Isoprenoids	Phospholipids	Glycerolipid and Glycerophospholipid Metabolism in Bacteria	Phosphatidate cytidylyltransferase (EC 2.7.7.41)	fig|6666666.229861.peg.41
Fatty Acids, Lipids, and Isoprenoids	Phospholipids	Glycerolipid and Glycerophospholipid Metabolism in Bacteria	Acyl carrier protein	fig|6666666.229861.peg.1539
Fatty Acids, Lipids, and Isoprenoids	Phospholipids	Glycerolipid and Glycerophospholipid Metabolism in Bacteria	Glycerate kinase (EC 2.7.1.31)	fig|6666666.229861.peg.170, <br>fig|6666666.229861.peg.226, <br>fig|6666666.229861.peg.562, <br>fig|6666666.229861.peg.723, <br>fig|6666666.229861.peg.874, <br>fig|6666666.229861.peg.1023, <br>fig|6666666.229861.peg.1277, <br>fig|6666666.229861.peg.1787, <br>fig|6666666.229861.peg.1897, <br>fig|6666666.229861.peg.2209, <br>fig|6666666.229861.peg.2223, <br>fig|6666666.229861.peg.2224, <br>fig|6666666.229861.peg.2514
Fatty Acids, Lipids, and Isoprenoids	Triacylglycerols	Triacylglycerol metabolism	Monoglyceride lipase (EC 3.1.1.23)	fig|6666666.229861.peg.885, <br>fig|6666666.229861.peg.2453
Fatty Acids, Lipids, and Isoprenoids	Triacylglycerols	Triacylglycerol metabolism	Lysophospholipase L2 (EC 3.1.1.5)	fig|6666666.229861.peg.876
Fatty Acids, Lipids, and Isoprenoids	Triacylglycerols	Triacylglycerol metabolism	Lysophospholipase (EC 3.1.1.5)	fig|6666666.229861.peg.885, <br>fig|6666666.229861.peg.2453
Fatty Acids, Lipids, and Isoprenoids	Fatty acids	Fatty Acid Biosynthesis FASII	3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)	fig|6666666.229861.peg.1145
Fatty Acids, Lipids, and Isoprenoids	Fatty acids	Fatty Acid Biosynthesis FASII	Acetyl-coenzyme A carboxyl transferase alpha chain (EC 6.4.1.2)	fig|6666666.229861.peg.1134
Fatty Acids, Lipids, and Isoprenoids	Fatty acids	Fatty Acid Biosynthesis FASII	Biotin carboxyl carrier protein of acetyl-CoA carboxylase	fig|6666666.229861.peg.1137
Fatty Acids, Lipids, and Isoprenoids	Fatty acids	Fatty Acid Biosynthesis FASII	Holo-[acyl-carrier protein] synthase (EC 2.7.8.7)	fig|6666666.229861.peg.1102
Fatty Acids, Lipids, and Isoprenoids	Fatty acids	Fatty Acid Biosynthesis FASII	Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14)	fig|6666666.229861.peg.1136
Fatty Acids, Lipids, and Isoprenoids	Fatty acids	Fatty Acid Biosynthesis FASII	Acetyl-coenzyme A carboxyl transferase beta chain (EC 6.4.1.2)	fig|6666666.229861.peg.1135
Fatty Acids, Lipids, and Isoprenoids	Fatty acids	Fatty Acid Biosynthesis FASII	Acyl carrier protein	fig|6666666.229861.peg.1539
Fatty Acids, Lipids, and Isoprenoids	Fatty acids	Fatty Acid Biosynthesis FASII	Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39)	fig|6666666.229861.peg.1146
Fatty Acids, Lipids, and Isoprenoids	Fatty acids	Fatty Acid Biosynthesis FASII	3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabZ form (EC 4.2.1.59)	fig|6666666.229861.peg.1343
Fatty Acids, Lipids, and Isoprenoids	Isoprenoids	Isoprenoinds for Quinones	Dimethylallyltransferase (EC 2.5.1.1)	fig|6666666.229861.peg.1994
Fatty Acids, Lipids, and Isoprenoids	Isoprenoids	Isoprenoinds for Quinones	Undecaprenyl diphosphate synthase (EC 2.5.1.31)	fig|6666666.229861.peg.42
Fatty Acids, Lipids, and Isoprenoids	Isoprenoids	Isoprenoinds for Quinones	Heptaprenyl diphosphate synthase component I (EC 2.5.1.30)	fig|6666666.229861.peg.1118
Fatty Acids, Lipids, and Isoprenoids	Isoprenoids	Isoprenoinds for Quinones	(2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10)	fig|6666666.229861.peg.1994
Fatty Acids, Lipids, and Isoprenoids	Isoprenoids	Isoprenoid Biosynthesis	Dimethylallyltransferase (EC 2.5.1.1)	fig|6666666.229861.peg.1994
Fatty Acids, Lipids, and Isoprenoids	Isoprenoids	Isoprenoid Biosynthesis	4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2)	fig|6666666.229861.peg.1607
Fatty Acids, Lipids, and Isoprenoids	Isoprenoids	Isoprenoid Biosynthesis	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148)	fig|6666666.229861.peg.1807
Fatty Acids, Lipids, and Isoprenoids	Isoprenoids	Isoprenoid Biosynthesis	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12)	fig|6666666.229861.peg.2573
Fatty Acids, Lipids, and Isoprenoids	Isoprenoids	Isoprenoid Biosynthesis	1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7)	fig|6666666.229861.peg.1105
Fatty Acids, Lipids, and Isoprenoids	Isoprenoids	Isoprenoid Biosynthesis	1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.267)	fig|6666666.229861.peg.40
Fatty Acids, Lipids, and Isoprenoids	Isoprenoids	Isoprenoid Biosynthesis	Undecaprenyl diphosphate synthase (EC 2.5.1.31)	fig|6666666.229861.peg.42
Fatty Acids, Lipids, and Isoprenoids	Isoprenoids	Isoprenoid Biosynthesis	1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (EC 1.17.7.1)	fig|6666666.229861.peg.1732
Fatty Acids, Lipids, and Isoprenoids	Isoprenoids	Isoprenoid Biosynthesis	(2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10)	fig|6666666.229861.peg.1994
Fatty Acids, Lipids, and Isoprenoids	Isoprenoids	Isoprenoid Biosynthesis	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC 2.7.7.60)	fig|6666666.229861.peg.2572
Fatty Acids, Lipids, and Isoprenoids	Isoprenoids	Polyprenyl Diphosphate Biosynthesis	Undecaprenyl diphosphate synthase (EC 2.5.1.31)	fig|6666666.229861.peg.42
Fatty Acids, Lipids, and Isoprenoids	Isoprenoids	Polyprenyl Diphosphate Biosynthesis	Heptaprenyl diphosphate synthase component I (EC 2.5.1.30)	fig|6666666.229861.peg.1118
Fatty Acids, Lipids, and Isoprenoids	Isoprenoids	Polyprenyl Diphosphate Biosynthesis	(2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10)	fig|6666666.229861.peg.1994
Fatty Acids, Lipids, and Isoprenoids	Isoprenoids	Nonmevalonate Branch of Isoprenoid Biosynthesis	1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.267)	fig|6666666.229861.peg.40
Fatty Acids, Lipids, and Isoprenoids	Isoprenoids	Nonmevalonate Branch of Isoprenoid Biosynthesis	4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2)	fig|6666666.229861.peg.1607
Fatty Acids, Lipids, and Isoprenoids	Isoprenoids	Nonmevalonate Branch of Isoprenoid Biosynthesis	1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (EC 1.17.7.1)	fig|6666666.229861.peg.1732
Fatty Acids, Lipids, and Isoprenoids	Isoprenoids	Nonmevalonate Branch of Isoprenoid Biosynthesis	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148)	fig|6666666.229861.peg.1807
Fatty Acids, Lipids, and Isoprenoids	Isoprenoids	Nonmevalonate Branch of Isoprenoid Biosynthesis	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12)	fig|6666666.229861.peg.2573
Fatty Acids, Lipids, and Isoprenoids	Isoprenoids	Nonmevalonate Branch of Isoprenoid Biosynthesis	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC 2.7.7.60)	fig|6666666.229861.peg.2572
Fatty Acids, Lipids, and Isoprenoids	Isoprenoids	Nonmevalonate Branch of Isoprenoid Biosynthesis	1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7)	fig|6666666.229861.peg.1105
Fatty Acids, Lipids, and Isoprenoids	Isoprenoids	Isoprenoid Biosynthesis: Interconversions	(2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10)	fig|6666666.229861.peg.1994
Nitrogen Metabolism	Nitrogen Metabolism - no subcategory	Nitrosative stress	Hydroxylamine reductase (EC 1.7.-.-)	fig|6666666.229861.peg.981
Nitrogen Metabolism	Nitrogen Metabolism - no subcategory	Nitrosative stress	Hcp transcriptional regulator HcpR (Crp/Fnr family)	fig|6666666.229861.peg.980
Nitrogen Metabolism	Nitrogen Metabolism - no subcategory	Ammonia assimilation	Glutamate synthase [NADPH] small chain (EC 1.4.1.13)	fig|6666666.229861.peg.913
Nitrogen Metabolism	Nitrogen Metabolism - no subcategory	Ammonia assimilation	Nitrogen regulatory protein P-II	fig|6666666.229861.peg.830
Nitrogen Metabolism	Nitrogen Metabolism - no subcategory	Ammonia assimilation	Glutamate synthase [NADPH] large chain (EC 1.4.1.13)	fig|6666666.229861.peg.159, <br>fig|6666666.229861.peg.1148
Dormancy and Sporulation	Dormancy and Sporulation - no subcategory	Persister Cells	HipA protein	fig|6666666.229861.peg.994
Dormancy and Sporulation	Dormancy and Sporulation - no subcategory	Sporulation-associated proteins with broader functions	Protein of unknown function identified by role in sporulation (SpoVG)	fig|6666666.229861.peg.1808
Dormancy and Sporulation	Dormancy and Sporulation - no subcategory	Sporulation-associated proteins with broader functions	Peptidyl-tRNA hydrolase (EC 3.1.1.29)	fig|6666666.229861.peg.1185
Respiration	Electron accepting reactions	Terminal cytochrome d ubiquinol oxidases	Transport ATP-binding protein CydD	fig|6666666.229861.peg.302, <br>fig|6666666.229861.peg.2326
Respiration	Electron accepting reactions	Terminal cytochrome d ubiquinol oxidases	Transport ATP-binding protein CydC	fig|6666666.229861.peg.301, <br>fig|6666666.229861.peg.502, <br>fig|6666666.229861.peg.745, <br>fig|6666666.229861.peg.766, <br>fig|6666666.229861.peg.787, <br>fig|6666666.229861.peg.2042, <br>fig|6666666.229861.peg.2327
Respiration	Electron accepting reactions	Anaerobic respiratory reductases	Flavodoxin reductases (ferredoxin-NADPH reductases) family 1	fig|6666666.229861.peg.2173
Respiration	Electron accepting reactions	Terminal cytochrome oxidases	Transport ATP-binding protein CydD	fig|6666666.229861.peg.302, <br>fig|6666666.229861.peg.2326
Respiration	Electron accepting reactions	Terminal cytochrome oxidases	Transport ATP-binding protein CydC	fig|6666666.229861.peg.301, <br>fig|6666666.229861.peg.502, <br>fig|6666666.229861.peg.745, <br>fig|6666666.229861.peg.766, <br>fig|6666666.229861.peg.787, <br>fig|6666666.229861.peg.2042, <br>fig|6666666.229861.peg.2327
Respiration	Electron donating reactions	Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes	Na(+)-translocating NADH-quinone reductase subunit D (EC 1.6.5.-)	fig|6666666.229861.peg.1353
Respiration	Electron donating reactions	Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes	Na(+)-translocating NADH-quinone reductase subunit E (EC 1.6.5.-)	fig|6666666.229861.peg.1352
Respiration	Electron donating reactions	Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes	Na(+)-translocating NADH-quinone reductase subunit A (EC 1.6.5.-)	fig|6666666.229861.peg.1356
Respiration	Electron donating reactions	Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes	Electron transport complex protein RnfD	fig|6666666.229861.peg.1855
Respiration	Electron donating reactions	Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes	Electron transport complex protein RnfB	fig|6666666.229861.peg.1093
Respiration	Electron donating reactions	Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes	Na(+)-translocating NADH-quinone reductase subunit C (EC 1.6.5.-)	fig|6666666.229861.peg.1354
Respiration	Electron donating reactions	Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes	Na(+)-translocating NADH-quinone reductase subunit B (EC 1.6.5.-)	fig|6666666.229861.peg.1355
Respiration	Electron donating reactions	Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes	Electron transport complex protein RnfC	fig|6666666.229861.peg.1854
Respiration	Electron donating reactions	Respiratory dehydrogenases 1	Glycerol-3-phosphate dehydrogenase (EC 1.1.5.3)	fig|6666666.229861.peg.317, <br>fig|6666666.229861.peg.603
Respiration	Electron donating reactions	NiFe hydrogenase maturation	[NiFe] hydrogenase nickel incorporation protein HypA	fig|6666666.229861.peg.2472
Respiration	Electron donating reactions	NiFe hydrogenase maturation	[NiFe] hydrogenase nickel incorporation-associated protein HypB	fig|6666666.229861.peg.2471
Respiration	Respiration - no subcategory	Formate hydrogenase	Formate dehydrogenase-O, major subunit (EC 1.2.1.2)	fig|6666666.229861.peg.2037, <br>fig|6666666.229861.peg.2473
Stress Response	Osmotic stress	Synthesis of osmoregulated periplasmic glucans	Phosphoglycerol transferase I (EC 2.7.8.20)	fig|6666666.229861.peg.590
Stress Response	Osmotic stress	Choline and Betaine Uptake and Betaine Biosynthesis	Sarcosine oxidase alpha subunit (EC 1.5.3.1)	fig|6666666.229861.peg.318, <br>fig|6666666.229861.peg.604
Stress Response	Osmotic stress	Choline and Betaine Uptake and Betaine Biosynthesis	L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1)	fig|6666666.229861.peg.761
Stress Response	Oxidative stress	Oxidative stress	Rubrerythrin	fig|6666666.229861.peg.930
Stress Response	Oxidative stress	Oxidative stress	transcriptional regulator, Crp/Fnr family	fig|6666666.229861.peg.293
Stress Response	Oxidative stress	Oxidative stress	Superoxide reductase (EC 1.15.1.2)	fig|6666666.229861.peg.2201
Stress Response	Oxidative stress	Oxidative stress	Probable peroxiredoxin (EC 1.11.1.15)	fig|6666666.229861.peg.485
Stress Response	Oxidative stress	Oxidative stress	Redox-sensitive transcriptional regulator (AT-rich DNA-binding protein)	fig|6666666.229861.peg.1106
Stress Response	Oxidative stress	Glutathione: Non-redox reactions	Hydroxyacylglutathione hydrolase (EC 3.1.2.6)	fig|6666666.229861.peg.97
Stress Response	Oxidative stress	CoA disulfide thiol-disulfide redox system	CoA-disulfide reductase (EC 1.8.1.14)	fig|6666666.229861.peg.620
Stress Response	Oxidative stress	Rubrerythrin	Rubrerythrin	fig|6666666.229861.peg.930
Stress Response	Oxidative stress	Rubrerythrin	Rubredoxin	fig|6666666.229861.peg.1564
Stress Response	Oxidative stress	Rubrerythrin	Superoxide reductase (EC 1.15.1.2)	fig|6666666.229861.peg.2201
Stress Response	Oxidative stress	Rubrerythrin	Probable peroxiredoxin (EC 1.11.1.15)	fig|6666666.229861.peg.485
Stress Response	Oxidative stress	Redox-dependent regulation of nucleus processes	Nicotinate phosphoribosyltransferase (EC 2.4.2.11)	fig|6666666.229861.peg.641
Stress Response	Oxidative stress	Redox-dependent regulation of nucleus processes	NAD-dependent protein deacetylase of SIR2 family	fig|6666666.229861.peg.1222, <br>fig|6666666.229861.peg.2559
Stress Response	Oxidative stress	Redox-dependent regulation of nucleus processes	NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)	fig|6666666.229861.peg.1955
Stress Response	Oxidative stress	Glutathione: Redox cycle	Glutathione peroxidase (EC 1.11.1.9)	fig|6666666.229861.peg.2178
Stress Response	Heat shock	Heat shock dnaK gene cluster extended	Hypothetical radical SAM family enzyme, NOT coproporphyrinogen III oxidase, oxygen-independent	fig|6666666.229861.peg.1646
Stress Response	Heat shock	Heat shock dnaK gene cluster extended	Hypothetical radical SAM family enzyme in heat shock gene cluster, similarity with CPO of BS HemN-type	fig|6666666.229861.peg.1935
Stress Response	Heat shock	Heat shock dnaK gene cluster extended	Chaperone protein DnaK	fig|6666666.229861.peg.1170
Stress Response	Heat shock	Heat shock dnaK gene cluster extended	tRNA-t(6)A37 methylthiotransferase	fig|6666666.229861.peg.1086
Stress Response	Heat shock	Heat shock dnaK gene cluster extended	Chaperone protein DnaJ	fig|6666666.229861.peg.1171, <br>fig|6666666.229861.peg.2398
Stress Response	Heat shock	Heat shock dnaK gene cluster extended	Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-)	fig|6666666.229861.peg.1077
Stress Response	Heat shock	Heat shock dnaK gene cluster extended	tmRNA-binding protein SmpB	fig|6666666.229861.peg.1933
Stress Response	Heat shock	Heat shock dnaK gene cluster extended	Heat shock protein GrpE	fig|6666666.229861.peg.1169
Stress Response	Heat shock	Heat shock dnaK gene cluster extended	Translation elongation factor LepA	fig|6666666.229861.peg.1092
Stress Response	Heat shock	Heat shock dnaK gene cluster extended	Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15)	fig|6666666.229861.peg.2554
Stress Response	Heat shock	Heat shock dnaK gene cluster extended	Signal peptidase-like protein	fig|6666666.229861.peg.582
Stress Response	Heat shock	Heat shock dnaK gene cluster extended	rRNA small subunit methyltransferase I	fig|6666666.229861.peg.667
Stress Response	Stress Response - no subcategory	SigmaB stress responce regulation	Serine-protein kinase RsbW (EC 2.7.11.1)	fig|6666666.229861.peg.1632, <br>fig|6666666.229861.peg.1634
Stress Response	Stress Response - no subcategory	SigmaB stress responce regulation	Serine phosphatase RsbU, regulator of sigma subunit	fig|6666666.229861.peg.1172, <br>fig|6666666.229861.peg.1173, <br>fig|6666666.229861.peg.1634
Stress Response	Stress Response - no subcategory	SigmaB stress responce regulation	RNA polymerase sigma factor SigB	fig|6666666.229861.peg.356
Stress Response	Stress Response - no subcategory	SigmaB stress responce regulation	Anti-sigma B factor antagonist RsbV	fig|6666666.229861.peg.1174, <br>fig|6666666.229861.peg.1633, <br>fig|6666666.229861.peg.2395
Stress Response	Stress Response - no subcategory	Hfl operon	GTP-binding protein HflX	fig|6666666.229861.peg.440
Stress Response	Stress Response - no subcategory	Hfl operon	HflC protein	fig|6666666.229861.peg.1802
Stress Response	Stress Response - no subcategory	Hfl operon	HflK protein	fig|6666666.229861.peg.1801
Stress Response	Stress Response - no subcategory	Carbon Starvation	Carbon storage regulator	fig|6666666.229861.peg.53
Stress Response	Stress Response - no subcategory	Carbon Starvation	Carbon starvation protein A	fig|6666666.229861.peg.486
Stress Response	Periplasmic Stress	Periplasmic Stress Response	Outer membrane stress sensor protease DegS	fig|6666666.229861.peg.2581
Stress Response	Periplasmic Stress	Periplasmic Stress Response	Outer membrane protein H precursor	fig|6666666.229861.peg.278
Stress Response	Periplasmic Stress	Periplasmic Stress Response	Intramembrane protease RasP/YluC, implicated in cell division based on FtsL cleavage	fig|6666666.229861.peg.39
Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds	Quinate degradation	3-dehydroquinate dehydratase I (EC 4.2.1.10)	fig|6666666.229861.peg.2089, <br>fig|6666666.229861.peg.2090
Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation	Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis	Glutamate synthase [NADPH] small chain (EC 1.4.1.13)	fig|6666666.229861.peg.913
Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation	Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis	Aspartate aminotransferase (EC 2.6.1.1)	fig|6666666.229861.peg.104, <br>fig|6666666.229861.peg.2117
Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation	Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis	NADP-specific glutamate dehydrogenase (EC 1.4.1.4)	fig|6666666.229861.peg.1510
Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation	Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis	NAD-specific glutamate dehydrogenase (EC 1.4.1.2)	fig|6666666.229861.peg.1510
Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation	Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis	Glutamate racemase (EC 5.1.1.3)	fig|6666666.229861.peg.1913
Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation	Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis	Aspartate ammonia-lyase (EC 4.3.1.1)	fig|6666666.229861.peg.2308
Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation	Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis	Glutamate synthase [NADPH] large chain (EC 1.4.1.13)	fig|6666666.229861.peg.159, <br>fig|6666666.229861.peg.1148
Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation	Glutamate dehydrogenases	NADP-specific glutamate dehydrogenase (EC 1.4.1.4)	fig|6666666.229861.peg.1510
Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation	Glutamate dehydrogenases	NAD-specific glutamate dehydrogenase (EC 1.4.1.2)	fig|6666666.229861.peg.1510
Amino Acids and Derivatives	Histidine Metabolism	Histidine Degradation	Imidazolonepropionase (EC 3.5.2.7)	fig|6666666.229861.peg.520
Amino Acids and Derivatives	Histidine Metabolism	Histidine Degradation	Urocanate hydratase (EC 4.2.1.49)	fig|6666666.229861.peg.284
Amino Acids and Derivatives	Histidine Metabolism	Histidine Degradation	Histidine ammonia-lyase (EC 4.3.1.3)	fig|6666666.229861.peg.1133
Amino Acids and Derivatives	Histidine Metabolism	Histidine Degradation	Glutamate formiminotransferase (EC 2.1.2.5)	fig|6666666.229861.peg.808
Amino Acids and Derivatives	Arginine; urea cycle, polyamines	Arginine Deiminase Pathway	Carbamate kinase (EC 2.7.2.2)	fig|6666666.229861.peg.167
Amino Acids and Derivatives	Arginine; urea cycle, polyamines	Arginine Deiminase Pathway	Ornithine carbamoyltransferase (EC 2.1.3.3)	fig|6666666.229861.peg.1451
Amino Acids and Derivatives	Arginine; urea cycle, polyamines	Arginine Deiminase Pathway	Arginine deiminase (EC 3.5.3.6)	fig|6666666.229861.peg.949
Amino Acids and Derivatives	Arginine; urea cycle, polyamines	Polyamine Metabolism	Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1)	fig|6666666.229861.peg.649, <br>fig|6666666.229861.peg.1924
Amino Acids and Derivatives	Arginine; urea cycle, polyamines	Polyamine Metabolism	Carbamate kinase (EC 2.7.2.2)	fig|6666666.229861.peg.167
Amino Acids and Derivatives	Arginine; urea cycle, polyamines	Polyamine Metabolism	Arginine decarboxylase (EC 4.1.1.19)	fig|6666666.229861.peg.1621
Amino Acids and Derivatives	Arginine; urea cycle, polyamines	Polyamine Metabolism	Ornithine decarboxylase (EC 4.1.1.17)	fig|6666666.229861.peg.1621
Amino Acids and Derivatives	Arginine; urea cycle, polyamines	Polyamine Metabolism	5@1-methylthioadenosine nucleosidase (EC 3.2.2.16)	fig|6666666.229861.peg.569
Amino Acids and Derivatives	Arginine; urea cycle, polyamines	Arginine and Ornithine Degradation	Carbamate kinase (EC 2.7.2.2)	fig|6666666.229861.peg.167
Amino Acids and Derivatives	Arginine; urea cycle, polyamines	Arginine and Ornithine Degradation	Arginine decarboxylase (EC 4.1.1.19)	fig|6666666.229861.peg.1621
Amino Acids and Derivatives	Arginine; urea cycle, polyamines	Arginine and Ornithine Degradation	Ornithine decarboxylase (EC 4.1.1.17)	fig|6666666.229861.peg.1621
Amino Acids and Derivatives	Arginine; urea cycle, polyamines	Arginine and Ornithine Degradation	Ornithine cyclodeaminase (EC 4.3.1.12)	fig|6666666.229861.peg.444, <br>fig|6666666.229861.peg.1883
Amino Acids and Derivatives	Arginine; urea cycle, polyamines	Arginine and Ornithine Degradation	Ornithine carbamoyltransferase (EC 2.1.3.3)	fig|6666666.229861.peg.1451
Amino Acids and Derivatives	Arginine; urea cycle, polyamines	Arginine and Ornithine Degradation	NADP-specific glutamate dehydrogenase (EC 1.4.1.4)	fig|6666666.229861.peg.1510
Amino Acids and Derivatives	Arginine; urea cycle, polyamines	Arginine and Ornithine Degradation	Arginine deiminase (EC 3.5.3.6)	fig|6666666.229861.peg.949
Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine	Methionine Degradation	S-adenosylhomocysteine nucleosidase (EC 3.2.2.9)	fig|6666666.229861.peg.569
Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine	Methionine Degradation	Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)	fig|6666666.229861.peg.1209, <br>fig|6666666.229861.peg.2498
Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine	Methionine Degradation	Methionine gamma-lyase (EC 4.4.1.11)	fig|6666666.229861.peg.2500
Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine	Methionine Degradation	Methionine ABC transporter ATP-binding protein	fig|6666666.229861.peg.1238
Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine	Methionine Degradation	S-adenosylmethionine synthetase (EC 2.5.1.6)	fig|6666666.229861.peg.162
Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine	Methionine Degradation	Methionine transporter MetT	fig|6666666.229861.peg.2502
Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine	Threonine degradation	L-threonine 3-dehydrogenase (EC 1.1.1.103)	fig|6666666.229861.peg.95
Amino Acids and Derivatives	Aromatic amino acids and derivatives	Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)	Shikimate kinase I (EC 2.7.1.71)	fig|6666666.229861.peg.137
Amino Acids and Derivatives	Aromatic amino acids and derivatives	Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)	5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19)	fig|6666666.229861.peg.2134
Amino Acids and Derivatives	Aromatic amino acids and derivatives	Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)	Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25)	fig|6666666.229861.peg.2089, <br>fig|6666666.229861.peg.2090
Amino Acids and Derivatives	Aromatic amino acids and derivatives	Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)	2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha (EC 2.5.1.54)	fig|6666666.229861.peg.249
Amino Acids and Derivatives	Aromatic amino acids and derivatives	Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)	3-dehydroquinate synthase (EC 4.2.3.4)	fig|6666666.229861.peg.568
Amino Acids and Derivatives	Aromatic amino acids and derivatives	Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)	Chorismate synthase (EC 4.2.3.5)	fig|6666666.229861.peg.1643
Amino Acids and Derivatives	Aromatic amino acids and derivatives	Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)	3-dehydroquinate dehydratase I (EC 4.2.1.10)	fig|6666666.229861.peg.2089, <br>fig|6666666.229861.peg.2090
Amino Acids and Derivatives	Aromatic amino acids and derivatives	Chorismate Synthesis	5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19)	fig|6666666.229861.peg.2134
Amino Acids and Derivatives	Aromatic amino acids and derivatives	Chorismate Synthesis	2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha (EC 2.5.1.54)	fig|6666666.229861.peg.249
Amino Acids and Derivatives	Aromatic amino acids and derivatives	Chorismate Synthesis	Chorismate mutase II (EC 5.4.99.5)	fig|6666666.229861.peg.1969
Amino Acids and Derivatives	Aromatic amino acids and derivatives	Chorismate Synthesis	3-dehydroquinate synthase (EC 4.2.3.4)	fig|6666666.229861.peg.568
Amino Acids and Derivatives	Aromatic amino acids and derivatives	Chorismate Synthesis	Chorismate synthase (EC 4.2.3.5)	fig|6666666.229861.peg.1643
Amino Acids and Derivatives	Aromatic amino acids and derivatives	Chorismate Synthesis	3-dehydroquinate dehydratase I (EC 4.2.1.10)	fig|6666666.229861.peg.2089, <br>fig|6666666.229861.peg.2090
Amino Acids and Derivatives	Aromatic amino acids and derivatives	Chorismate Synthesis	Shikimate kinase I (EC 2.7.1.71)	fig|6666666.229861.peg.137
Amino Acids and Derivatives	Aromatic amino acids and derivatives	Chorismate Synthesis	Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25)	fig|6666666.229861.peg.2089, <br>fig|6666666.229861.peg.2090
Amino Acids and Derivatives	Aromatic amino acids and derivatives	Phenylalanine and Tyrosine Branches from Chorismate	Chorismate mutase II (EC 5.4.99.5)	fig|6666666.229861.peg.1969
Amino Acids and Derivatives	Alanine, serine, and glycine	Glycine Biosynthesis	2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)	fig|6666666.229861.peg.2496
Amino Acids and Derivatives	Alanine, serine, and glycine	Glycine Biosynthesis	Serine hydroxymethyltransferase (EC 2.1.2.1)	fig|6666666.229861.peg.339
Amino Acids and Derivatives	Alanine, serine, and glycine	Glycine Biosynthesis	L-threonine 3-dehydrogenase (EC 1.1.1.103)	fig|6666666.229861.peg.95
Amino Acids and Derivatives	Alanine, serine, and glycine	Alanine biosynthesis	Cysteine desulfurase (EC 2.8.1.7)	fig|6666666.229861.peg.152, <br>fig|6666666.229861.peg.567, <br>fig|6666666.229861.peg.1226
Amino Acids and Derivatives	Alanine, serine, and glycine	Alanine biosynthesis	Cysteine desulfurase (EC 2.8.1.7), SufS subfamily	fig|6666666.229861.peg.2365
Amino Acids and Derivatives	Alanine, serine, and glycine	Alanine biosynthesis	Alanine racemase (EC 5.1.1.1)	fig|6666666.229861.peg.1606
Amino Acids and Derivatives	Alanine, serine, and glycine	Serine Biosynthesis	D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)	fig|6666666.229861.peg.2071
Amino Acids and Derivatives	Alanine, serine, and glycine	Serine Biosynthesis	Phosphoserine phosphatase (EC 3.1.3.3)	fig|6666666.229861.peg.2288, <br>fig|6666666.229861.peg.2288
Amino Acids and Derivatives	Alanine, serine, and glycine	Serine Biosynthesis	Serine hydroxymethyltransferase (EC 2.1.2.1)	fig|6666666.229861.peg.339
Amino Acids and Derivatives	Alanine, serine, and glycine	Glycine cleavage system	Glycine cleavage system H protein	fig|6666666.229861.peg.2074
Amino Acids and Derivatives	Alanine, serine, and glycine	Glycine cleavage system	Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)	fig|6666666.229861.peg.2072
Amino Acids and Derivatives	Alanine, serine, and glycine	Glycine cleavage system	Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)	fig|6666666.229861.peg.2073
Amino Acids and Derivatives	Alanine, serine, and glycine	Glycine cleavage system	Dihydrolipoamide dehydrogenase (EC 1.8.1.4)	fig|6666666.229861.peg.2077
Amino Acids and Derivatives	Alanine, serine, and glycine	Glycine cleavage system	Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	fig|6666666.229861.peg.2075
Amino Acids and Derivatives	Alanine, serine, and glycine	Glycine and Serine Utilization	D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)	fig|6666666.229861.peg.2071
Amino Acids and Derivatives	Alanine, serine, and glycine	Glycine and Serine Utilization	L-serine dehydratase, alpha subunit (EC 4.3.1.17)	fig|6666666.229861.peg.1973
Amino Acids and Derivatives	Alanine, serine, and glycine	Glycine and Serine Utilization	Phosphoserine phosphatase (EC 3.1.3.3)	fig|6666666.229861.peg.2288
Amino Acids and Derivatives	Alanine, serine, and glycine	Glycine and Serine Utilization	L-serine dehydratase, beta subunit (EC 4.3.1.17)	fig|6666666.229861.peg.1974
Amino Acids and Derivatives	Alanine, serine, and glycine	Glycine and Serine Utilization	Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)	fig|6666666.229861.peg.2072
Amino Acids and Derivatives	Alanine, serine, and glycine	Glycine and Serine Utilization	Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)	fig|6666666.229861.peg.2073
Amino Acids and Derivatives	Alanine, serine, and glycine	Glycine and Serine Utilization	Serine hydroxymethyltransferase (EC 2.1.2.1)	fig|6666666.229861.peg.339
Amino Acids and Derivatives	Alanine, serine, and glycine	Glycine and Serine Utilization	Seryl-tRNA synthetase (EC 6.1.1.11)	fig|6666666.229861.peg.2587
Amino Acids and Derivatives	Alanine, serine, and glycine	Glycine and Serine Utilization	Glycine cleavage system H protein	fig|6666666.229861.peg.2074
Amino Acids and Derivatives	Alanine, serine, and glycine	Glycine and Serine Utilization	2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)	fig|6666666.229861.peg.2496
Amino Acids and Derivatives	Alanine, serine, and glycine	Glycine and Serine Utilization	Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	fig|6666666.229861.peg.2075
Amino Acids and Derivatives	Alanine, serine, and glycine	Glycine and Serine Utilization	Glycerate kinase (EC 2.7.1.31)	fig|6666666.229861.peg.170, <br>fig|6666666.229861.peg.226, <br>fig|6666666.229861.peg.562, <br>fig|6666666.229861.peg.723, <br>fig|6666666.229861.peg.874, <br>fig|6666666.229861.peg.1023, <br>fig|6666666.229861.peg.1277, <br>fig|6666666.229861.peg.1787, <br>fig|6666666.229861.peg.1897, <br>fig|6666666.229861.peg.2209, <br>fig|6666666.229861.peg.2223, <br>fig|6666666.229861.peg.2224, <br>fig|6666666.229861.peg.2514
Sulfur Metabolism	Sulfur Metabolism - no subcategory	Thioredoxin-disulfide reductase	Thioredoxin reductase (EC 1.8.1.9)	fig|6666666.229861.peg.1272
Sulfur Metabolism	Sulfur Metabolism - no subcategory	Galactosylceramide and Sulfatide metabolism	Alpha-galactosidase (EC 3.2.1.22)	fig|6666666.229861.peg.1918
Sulfur Metabolism	Sulfur Metabolism - no subcategory	Galactosylceramide and Sulfatide metabolism	Beta-galactosidase (EC 3.2.1.23)	fig|6666666.229861.peg.1083, <br>fig|6666666.229861.peg.2179
Sulfur Metabolism	Sulfur Metabolism - no subcategory	Galactosylceramide and Sulfatide metabolism	Sialidase (EC 3.2.1.18)	fig|6666666.229861.peg.966
Sulfur Metabolism	Organic sulfur assimilation	Alkanesulfonates Utilization	Alkanesulfonates ABC transporter ATP-binding protein	fig|6666666.229861.peg.320
Phosphorus Metabolism	Phosphorus Metabolism - no subcategory	Phosphoenolpyruvate phosphomutase	2-aminoethylphosphonate:pyruvate aminotransferase (EC 2.6.1.37)	fig|6666666.229861.peg.1879
Phosphorus Metabolism	Phosphorus Metabolism - no subcategory	Phosphoenolpyruvate phosphomutase	Phosphoenolpyruvate phosphomutase (EC 5.4.2.9)	fig|6666666.229861.peg.1877
Phosphorus Metabolism	Phosphorus Metabolism - no subcategory	Phosphoenolpyruvate phosphomutase	Phosphonopyruvate decarboxylase (EC 4.1.1.82)	fig|6666666.229861.peg.1878
Phosphorus Metabolism	Phosphorus Metabolism - no subcategory	Phosphate metabolism	NAD(P) transhydrogenase subunit beta (EC 1.6.1.2)	fig|6666666.229861.peg.1660
Phosphorus Metabolism	Phosphorus Metabolism - no subcategory	Phosphate metabolism	Pyrophosphate-energized proton pump (EC 3.6.1.1)	fig|6666666.229861.peg.1193
Phosphorus Metabolism	Phosphorus Metabolism - no subcategory	Phosphate metabolism	Alkaline phosphatase like protein	fig|6666666.229861.peg.1515
Phosphorus Metabolism	Phosphorus Metabolism - no subcategory	Phosphate metabolism	Phosphate starvation-inducible protein PhoH, predicted ATPase	fig|6666666.229861.peg.1708, <br>fig|6666666.229861.peg.1708
Phosphorus Metabolism	Phosphorus Metabolism - no subcategory	Phosphate metabolism	Sodium-dependent phosphate transporter	fig|6666666.229861.peg.2278
Phosphorus Metabolism	Phosphorus Metabolism - no subcategory	Phosphate metabolism	NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2)	fig|6666666.229861.peg.1661, <br>fig|6666666.229861.peg.1662
Carbohydrates	Central carbohydrate metabolism	Pyruvate:ferredoxin oxidoreductase	Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)	fig|6666666.229861.peg.1209, <br>fig|6666666.229861.peg.2498
Carbohydrates	Central carbohydrate metabolism	Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate	Aldehyde dehydrogenase (EC 1.2.1.3)	fig|6666666.229861.peg.199
Carbohydrates	Central carbohydrate metabolism	Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate	Phosphate acetyltransferase (EC 2.3.1.8)	fig|6666666.229861.peg.516
Carbohydrates	Central carbohydrate metabolism	Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate	Acetate kinase (EC 2.7.2.1)	fig|6666666.229861.peg.1454
Carbohydrates	Central carbohydrate metabolism	Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate	NAD-dependent protein deacetylase of SIR2 family	fig|6666666.229861.peg.1222, <br>fig|6666666.229861.peg.2559
Carbohydrates	Central carbohydrate metabolism	Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate	Acylphosphate phosphohydrolase (EC 3.6.1.7), putative	fig|6666666.229861.peg.1319
Carbohydrates	Central carbohydrate metabolism	Pyruvate Alanine Serine Interconversions	L-serine dehydratase, alpha subunit (EC 4.3.1.17)	fig|6666666.229861.peg.1973
Carbohydrates	Central carbohydrate metabolism	Pyruvate Alanine Serine Interconversions	L-serine dehydratase, beta subunit (EC 4.3.1.17)	fig|6666666.229861.peg.1974
Carbohydrates	Central carbohydrate metabolism	Pyruvate Alanine Serine Interconversions	Alanine racemase (EC 5.1.1.1)	fig|6666666.229861.peg.1606
Carbohydrates	Central carbohydrate metabolism	Dihydroxyacetone kinases	Putative dihydroxyacetone kinase (EC 2.7.1.29), dihydroxyacetone binding subunit	fig|6666666.229861.peg.58
Carbohydrates	Central carbohydrate metabolism	Dihydroxyacetone kinases	Putative dihydroxyacetone kinase (EC 2.7.1.29), ADP-binding subunit	fig|6666666.229861.peg.57
Carbohydrates	Central carbohydrate metabolism	Glycolysis and Gluconeogenesis	Hexokinase (EC 2.7.1.1)	fig|6666666.229861.peg.161
Carbohydrates	Central carbohydrate metabolism	Glycolysis and Gluconeogenesis	Triosephosphate isomerase (EC 5.3.1.1)	fig|6666666.229861.peg.1705
Carbohydrates	Central carbohydrate metabolism	Glycolysis and Gluconeogenesis	Pyruvate,phosphate dikinase (EC 2.7.9.1)	fig|6666666.229861.peg.1362, <br>fig|6666666.229861.peg.1968
Carbohydrates	Central carbohydrate metabolism	Glycolysis and Gluconeogenesis	Pyrophosphate--fructose 6-phosphate 1-phosphotransferase, alpha subunit (EC 2.7.1.90)	fig|6666666.229861.peg.537
Carbohydrates	Central carbohydrate metabolism	Glycolysis and Gluconeogenesis	Pyrophosphate-dependent fructose 6-phosphate-1-kinase (EC 2.7.1.90)	fig|6666666.229861.peg.2007
Carbohydrates	Central carbohydrate metabolism	Glycolysis and Gluconeogenesis	Glucose-6-phosphate isomerase (EC 5.3.1.9)	fig|6666666.229861.peg.253
Carbohydrates	Central carbohydrate metabolism	Glycolysis and Gluconeogenesis	Fructose-bisphosphate aldolase class I (EC 4.1.2.13)	fig|6666666.229861.peg.849
Carbohydrates	Central carbohydrate metabolism	Glycolysis and Gluconeogenesis	Phosphoglycerate mutase (EC 5.4.2.1)	fig|6666666.229861.peg.281, <br>fig|6666666.229861.peg.2144
Carbohydrates	Central carbohydrate metabolism	Glycolysis and Gluconeogenesis	Pyruvate kinase (EC 2.7.1.40)	fig|6666666.229861.peg.222
Carbohydrates	Central carbohydrate metabolism	Glycolysis and Gluconeogenesis	Phosphoenolpyruvate synthase (EC 2.7.9.2)	fig|6666666.229861.peg.857
Carbohydrates	Central carbohydrate metabolism	Glycolysis and Gluconeogenesis	Enolase (EC 4.2.1.11)	fig|6666666.229861.peg.1469
Carbohydrates	Central carbohydrate metabolism	Glycolysis and Gluconeogenesis	NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)	fig|6666666.229861.peg.1955
Carbohydrates	Central carbohydrate metabolism	Glycolysis and Gluconeogenesis	Phosphoglycerate kinase (EC 2.7.2.3)	fig|6666666.229861.peg.2162
Carbohydrates	Central carbohydrate metabolism	Entner-Doudoroff Pathway	Hexokinase (EC 2.7.1.1)	fig|6666666.229861.peg.161
Carbohydrates	Central carbohydrate metabolism	Entner-Doudoroff Pathway	2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)	fig|6666666.229861.peg.625
Carbohydrates	Central carbohydrate metabolism	Entner-Doudoroff Pathway	Phosphoglycerate mutase (EC 5.4.2.1)	fig|6666666.229861.peg.281, <br>fig|6666666.229861.peg.2144
Carbohydrates	Central carbohydrate metabolism	Entner-Doudoroff Pathway	Pyruvate kinase (EC 2.7.1.40)	fig|6666666.229861.peg.222
Carbohydrates	Central carbohydrate metabolism	Entner-Doudoroff Pathway	Phosphoglycerate kinase (EC 2.7.2.3)	fig|6666666.229861.peg.2162
Carbohydrates	Central carbohydrate metabolism	Entner-Doudoroff Pathway	NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)	fig|6666666.229861.peg.1955
Carbohydrates	Central carbohydrate metabolism	Entner-Doudoroff Pathway	Enolase (EC 4.2.1.11)	fig|6666666.229861.peg.1469
Carbohydrates	Central carbohydrate metabolism	Entner-Doudoroff Pathway	2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)	fig|6666666.229861.peg.625
Carbohydrates	Central carbohydrate metabolism	Pentose phosphate pathway	Transketolase (EC 2.2.1.1)	fig|6666666.229861.peg.1781
Carbohydrates	Central carbohydrate metabolism	Pentose phosphate pathway	Ribose-phosphate pyrophosphokinase (EC 2.7.6.1)	fig|6666666.229861.peg.421
Carbohydrates	Central carbohydrate metabolism	Pentose phosphate pathway	Ribose 5-phosphate isomerase B (EC 5.3.1.6)	fig|6666666.229861.peg.860
Carbohydrates	Central carbohydrate metabolism	Pentose phosphate pathway	Ribose 5-phosphate isomerase A (EC 5.3.1.6)	fig|6666666.229861.peg.2091
Carbohydrates	Central carbohydrate metabolism	Pentose phosphate pathway	Ribulose-phosphate 3-epimerase (EC 5.1.3.1)	fig|6666666.229861.peg.273
Carbohydrates	Central carbohydrate metabolism	Pyruvate metabolism I: anaplerotic reactions, PEP	Pyruvate,phosphate dikinase (EC 2.7.9.1)	fig|6666666.229861.peg.1362, <br>fig|6666666.229861.peg.1968
Carbohydrates	Central carbohydrate metabolism	Pyruvate metabolism I: anaplerotic reactions, PEP	Malate Na(+) symporter	fig|6666666.229861.peg.372, <br>fig|6666666.229861.peg.373
Carbohydrates	Central carbohydrate metabolism	Pyruvate metabolism I: anaplerotic reactions, PEP	NADP-dependent malic enzyme (EC 1.1.1.40)	fig|6666666.229861.peg.136
Carbohydrates	Central carbohydrate metabolism	Pyruvate metabolism I: anaplerotic reactions, PEP	Pyruvate kinase (EC 2.7.1.40)	fig|6666666.229861.peg.222
Carbohydrates	Central carbohydrate metabolism	Pyruvate metabolism I: anaplerotic reactions, PEP	Phosphoenolpyruvate synthase (EC 2.7.9.2)	fig|6666666.229861.peg.857
Carbohydrates	Central carbohydrate metabolism	Glycolate, glyoxylate interconversions	Phosphoglycolate phosphatase (EC 3.1.3.18)	fig|6666666.229861.peg.390
Carbohydrates	Di- and oligosaccharides	Maltose and Maltodextrin Utilization	4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25)	fig|6666666.229861.peg.84
Carbohydrates	Di- and oligosaccharides	Maltose and Maltodextrin Utilization	Oligo-1,6-glucosidase (EC 3.2.1.10)	fig|6666666.229861.peg.576
Carbohydrates	Di- and oligosaccharides	Maltose and Maltodextrin Utilization	Glycogen phosphorylase (EC 2.4.1.1)	fig|6666666.229861.peg.105
Carbohydrates	Di- and oligosaccharides	Maltose and Maltodextrin Utilization	Aldose 1-epimerase (EC 5.1.3.3)	fig|6666666.229861.peg.1824
Carbohydrates	Di- and oligosaccharides	Lactose and Galactose Uptake and Utilization	UDP-glucose 4-epimerase (EC 5.1.3.2)	fig|6666666.229861.peg.1904, <br>fig|6666666.229861.peg.2200
Carbohydrates	Di- and oligosaccharides	Lactose and Galactose Uptake and Utilization	Galactose/methyl galactoside ABC transport system, permease protein MglC (TC 3.A.1.2.3)	fig|6666666.229861.peg.2511
Carbohydrates	Di- and oligosaccharides	Lactose and Galactose Uptake and Utilization	Alpha-galactosidase (EC 3.2.1.22)	fig|6666666.229861.peg.1918
Carbohydrates	Di- and oligosaccharides	Lactose and Galactose Uptake and Utilization	Galactose/methyl galactoside ABC transport system, ATP-binding protein MglA (EC 3.6.3.17)	fig|6666666.229861.peg.2512
Carbohydrates	Di- and oligosaccharides	Lactose and Galactose Uptake and Utilization	Beta-galactosidase (EC 3.2.1.23)	fig|6666666.229861.peg.1083, <br>fig|6666666.229861.peg.2179
Carbohydrates	Di- and oligosaccharides	Lactose and Galactose Uptake and Utilization	Galactokinase (EC 2.7.1.6)	fig|6666666.229861.peg.951, <br>fig|6666666.229861.peg.2508, <br>fig|6666666.229861.peg.2579
Carbohydrates	Di- and oligosaccharides	Lactose and Galactose Uptake and Utilization	Aldose 1-epimerase (EC 5.1.3.3)	fig|6666666.229861.peg.1824
Carbohydrates	Di- and oligosaccharides	Lactose utilization	Beta-galactosidase (EC 3.2.1.23)	fig|6666666.229861.peg.1083, <br>fig|6666666.229861.peg.2179
Carbohydrates	One-carbon Metabolism	One-carbon metabolism by tetrahydropterines	Formate--tetrahydrofolate ligase (EC 6.3.4.3)	fig|6666666.229861.peg.493
Carbohydrates	One-carbon Metabolism	One-carbon metabolism by tetrahydropterines	5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2)	fig|6666666.229861.peg.1506
Carbohydrates	One-carbon Metabolism	One-carbon metabolism by tetrahydropterines	Formiminotetrahydrofolate cyclodeaminase (EC 4.3.1.4)	fig|6666666.229861.peg.519
Carbohydrates	One-carbon Metabolism	One-carbon metabolism by tetrahydropterines	Methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5)	fig|6666666.229861.peg.487
Carbohydrates	One-carbon Metabolism	One-carbon metabolism by tetrahydropterines	Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9)	fig|6666666.229861.peg.487
Carbohydrates	Organic acids	Glycerate metabolism	2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)	fig|6666666.229861.peg.1513
Carbohydrates	Organic acids	Glycerate metabolism	D-glycerate transporter (predicted)	fig|6666666.229861.peg.722
Carbohydrates	Organic acids	Glycerate metabolism	Pyruvate kinase (EC 2.7.1.40)	fig|6666666.229861.peg.222
Carbohydrates	Organic acids	Glycerate metabolism	Glycerate kinase (EC 2.7.1.31)	fig|6666666.229861.peg.170, <br>fig|6666666.229861.peg.226, <br>fig|6666666.229861.peg.562, <br>fig|6666666.229861.peg.723, <br>fig|6666666.229861.peg.874, <br>fig|6666666.229861.peg.1023, <br>fig|6666666.229861.peg.1277, <br>fig|6666666.229861.peg.1787, <br>fig|6666666.229861.peg.1897, <br>fig|6666666.229861.peg.2209, <br>fig|6666666.229861.peg.2223, <br>fig|6666666.229861.peg.2224, <br>fig|6666666.229861.peg.2514
Carbohydrates	Organic acids	Citrate Metabolism, Transport, and Regulation	[Citrate [pro-3S]-lyase] ligase (EC 6.2.1.22)	fig|6666666.229861.peg.1988
Carbohydrates	Organic acids	Citrate Metabolism, Transport, and Regulation	Citrate lyase beta chain (EC 4.1.3.6)	fig|6666666.229861.peg.2082
Carbohydrates	Organic acids	Citrate Metabolism, Transport, and Regulation	Citrate lyase alpha chain (EC 4.1.3.6)	fig|6666666.229861.peg.2081
Carbohydrates	Fermentation	Fermentations: Lactate	L-lactate dehydrogenase (EC 1.1.1.27)	fig|6666666.229861.peg.859
Carbohydrates	Fermentation	Fermentations: Lactate	Phosphate acetyltransferase (EC 2.3.1.8)	fig|6666666.229861.peg.516
Carbohydrates	Fermentation	Fermentations: Lactate	Acetate kinase (EC 2.7.2.1)	fig|6666666.229861.peg.1454
Carbohydrates	Sugar alcohols	Glycerol and Glycerol-3-phosphate Uptake and Utilization	Glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein (TC 3.A.1.1.3)	fig|6666666.229861.peg.2388, <br>fig|6666666.229861.peg.2389
Carbohydrates	Sugar alcohols	Glycerol and Glycerol-3-phosphate Uptake and Utilization	Probable glycerol transport protein	fig|6666666.229861.peg.1320
Carbohydrates	Sugar alcohols	Glycerol and Glycerol-3-phosphate Uptake and Utilization	NADH peroxidase (EC 1.11.1.1)	fig|6666666.229861.peg.560
Carbohydrates	Sugar alcohols	Glycerol and Glycerol-3-phosphate Uptake and Utilization	Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46)	fig|6666666.229861.peg.1321, <br>fig|6666666.229861.peg.1477
Carbohydrates	Sugar alcohols	Glycerol and Glycerol-3-phosphate Uptake and Utilization	Glycerol-3-phosphate dehydrogenase (EC 1.1.5.3)	fig|6666666.229861.peg.317, <br>fig|6666666.229861.peg.603
Carbohydrates	Sugar alcohols	Glycerol and Glycerol-3-phosphate Uptake and Utilization	Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)	fig|6666666.229861.peg.2402
Carbohydrates	Sugar alcohols	Glycerol and Glycerol-3-phosphate Uptake and Utilization	Glycerol kinase (EC 2.7.1.30)	fig|6666666.229861.peg.1110
Carbohydrates	Carbohydrates - no subcategory	Carbon storage regulator	Flagellar assembly factor FliW	fig|6666666.229861.peg.52
Carbohydrates	Carbohydrates - no subcategory	Carbon storage regulator	Carbon storage regulator	fig|6666666.229861.peg.53
Carbohydrates	Polysaccharides	Glycogen metabolism	Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27)	fig|6666666.229861.peg.2346
Carbohydrates	Polysaccharides	Glycogen metabolism	4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25)	fig|6666666.229861.peg.84
Carbohydrates	Polysaccharides	Glycogen metabolism	Glycogen phosphorylase (EC 2.4.1.1)	fig|6666666.229861.peg.105
Carbohydrates	Polysaccharides	Glycogen metabolism	Glycogen debranching enzyme (EC 3.2.1.-)	fig|6666666.229861.peg.565
Carbohydrates	Polysaccharides	Glycogen metabolism	Glycogen branching enzyme, GH-57-type, archaeal (EC 2.4.1.18)	fig|6666666.229861.peg.1604, <br>fig|6666666.229861.peg.1605
Carbohydrates	Polysaccharides	Glycogen metabolism	Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21)	fig|6666666.229861.peg.2026
Carbohydrates	Monosaccharides	D-ribose utilization	Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)	fig|6666666.229861.peg.573
Carbohydrates	Monosaccharides	D-ribose utilization	Ribose 5-phosphate isomerase B (EC 5.3.1.6)	fig|6666666.229861.peg.860
Carbohydrates	Monosaccharides	D-ribose utilization	Ribose 5-phosphate isomerase A (EC 5.3.1.6)	fig|6666666.229861.peg.2091
Carbohydrates	Monosaccharides	Xylose utilization	Xylulose kinase (EC 2.7.1.17)	fig|6666666.229861.peg.420
Carbohydrates	Monosaccharides	Xylose utilization	Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8)	fig|6666666.229861.peg.865, <br>fig|6666666.229861.peg.866, <br>fig|6666666.229861.peg.867
Carbohydrates	Monosaccharides	Deoxyribose and Deoxynucleoside Catabolism	Purine nucleoside phosphorylase (EC 2.4.2.1)	fig|6666666.229861.peg.958
Carbohydrates	Monosaccharides	Deoxyribose and Deoxynucleoside Catabolism	Pyrimidine-nucleoside phosphorylase (EC 2.4.2.2)	fig|6666666.229861.peg.2493
Carbohydrates	Monosaccharides	Deoxyribose and Deoxynucleoside Catabolism	Deoxyribose-phosphate aldolase (EC 4.1.2.4)	fig|6666666.229861.peg.946
Carbohydrates	Monosaccharides	D-galactarate, D-glucarate and D-glycerate catabolism	2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)	fig|6666666.229861.peg.1513
Carbohydrates	Monosaccharides	D-galactarate, D-glucarate and D-glycerate catabolism	D-glycerate transporter (predicted)	fig|6666666.229861.peg.722
Carbohydrates	Monosaccharides	D-galactarate, D-glucarate and D-glycerate catabolism	Glycerate kinase (EC 2.7.1.31)	fig|6666666.229861.peg.170, <br>fig|6666666.229861.peg.226, <br>fig|6666666.229861.peg.562, <br>fig|6666666.229861.peg.723, <br>fig|6666666.229861.peg.874, <br>fig|6666666.229861.peg.1023, <br>fig|6666666.229861.peg.1277, <br>fig|6666666.229861.peg.1787, <br>fig|6666666.229861.peg.1897, <br>fig|6666666.229861.peg.2209, <br>fig|6666666.229861.peg.2223, <br>fig|6666666.229861.peg.2224, <br>fig|6666666.229861.peg.2514
Carbohydrates	Monosaccharides	D-galactarate, D-glucarate and D-glycerate catabolism - gjo	2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)	fig|6666666.229861.peg.1513
Carbohydrates	Monosaccharides	D-galactarate, D-glucarate and D-glycerate catabolism - gjo	D-glycerate transporter (predicted)	fig|6666666.229861.peg.722
Carbohydrates	Monosaccharides	D-galactarate, D-glucarate and D-glycerate catabolism - gjo	Glycerate kinase (EC 2.7.1.31)	fig|6666666.229861.peg.170, <br>fig|6666666.229861.peg.226, <br>fig|6666666.229861.peg.562, <br>fig|6666666.229861.peg.723, <br>fig|6666666.229861.peg.874, <br>fig|6666666.229861.peg.1023, <br>fig|6666666.229861.peg.1277, <br>fig|6666666.229861.peg.1787, <br>fig|6666666.229861.peg.1897, <br>fig|6666666.229861.peg.2209, <br>fig|6666666.229861.peg.2223, <br>fig|6666666.229861.peg.2224, <br>fig|6666666.229861.peg.2514
