fig|6666666.229899.peg.1 CDS CP012959.1 368 108 -2 - 261 HlyD family secretion protein - none -
fig|6666666.229899.peg.2 CDS CP012959.1 1048 365 -1 - 684 HlyD family secretion protein - none -
fig|6666666.229899.peg.3 CDS CP012959.1 1148 999 -2 - 150 HlyD family secretion protein - none -
fig|6666666.229899.peg.4 CDS CP012959.1 1235 1798 2 + 564 Transcriptional regulator, TetR family - none -
fig|6666666.229899.peg.5 CDS CP012959.1 2325 1849 -3 - 477 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229899.peg.6 CDS CP012959.1 2873 2319 -2 - 555 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229899.peg.7 CDS CP012959.1 3039 2833 -3 - 207 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229899.peg.8 CDS CP012959.1 3461 6070 2 + 2610 Membrane alanine aminopeptidase N (EC 3.4.11.2) Aminopeptidases (EC 3.4.11.-)
fig|6666666.229899.peg.9 CDS CP012959.1 6143 7162 2 + 1020 Dihydroorotate dehydrogenase (EC 1.3.3.1) De Novo Pyrimidine Synthesis
fig|6666666.229899.peg.10 CDS CP012959.1 7176 8012 3 + 837 COG0613, Predicted metal-dependent phosphoesterases (PHP family) YrdC-YciO-Sua5 protein family;
tRNA modification Bacteria
fig|6666666.229899.peg.11 CDS CP012959.1 8250 10856 3 + 2607 DNA topoisomerase I (EC 5.99.1.2) CBSS-272943.3.peg.1367;
Conserved gene cluster associated with Met-tRNA formyltransferase;
DNA topoisomerases, Type I, ATP-independent
fig|6666666.229899.peg.12 CDS CP012959.1 11777 10941 -2 - 837 ABC-type Co2+ transport system, periplasmic component - none -
fig|6666666.229899.peg.13 CDS CP012959.1 12836 11904 -2 - 933 Universal stress protein E Universal stress protein family
fig|6666666.229899.peg.14 CDS CP012959.1 13727 12954 -2 - 774 Fumarate and nitrate reduction regulatory protein Oxidative stress
fig|6666666.229899.peg.15 CDS CP012959.1 13836 14006 3 + 171 hypothetical protein - none -
fig|6666666.229899.peg.16 CDS CP012959.1 14565 14068 -3 - 498 Ferritin-like protein 2 - none -
fig|6666666.229899.peg.17 CDS CP012959.1 15066 14581 -3 - 486 Ferritin-like protein 2 - none -
fig|6666666.229899.peg.18 CDS CP012959.1 17047 15893 -1 - 1155 FIG00698722: hypothetical protein - none -
fig|6666666.229899.peg.19 CDS CP012959.1 18155 17025 -2 - 1131 putative phage-related secreted protein - none -
fig|6666666.229899.peg.20 CDS CP012959.1 18468 18163 -3 - 306 hypothetical protein - none -
fig|6666666.229899.peg.21 CDS CP012959.1 19645 18476 -1 - 1170 hypothetical protein - none -
fig|6666666.229899.peg.22 CDS CP012959.1 19976 19755 -2 - 222 hypothetical protein - none -
fig|6666666.229899.peg.23 CDS CP012959.1 20783 20454 -2 - 330 putative single stranded DNA-binding protien - none -
fig|6666666.229899.peg.24 CDS CP012959.1 21949 20804 -1 - 1146 FIG00698503: hypothetical protein - none -
fig|6666666.229899.peg.25 CDS CP012959.1 22082 22294 2 + 213 hypothetical protein - none -
fig|6666666.229899.peg.26 CDS CP012959.1 22373 22621 2 + 249 hypothetical protein - none -
fig|6666666.229899.peg.27 CDS CP012959.1 24510 23356 -3 - 1155 FIG00698722: hypothetical protein - none -
fig|6666666.229899.peg.28 CDS CP012959.1 25618 24488 -1 - 1131 putative phage-related secreted protein - none -
fig|6666666.229899.peg.29 CDS CP012959.1 25931 25626 -2 - 306 putative phage-related membrane protein - none -
fig|6666666.229899.peg.30 CDS CP012959.1 27108 25939 -3 - 1170 hypothetical protein - none -
fig|6666666.229899.peg.31 CDS CP012959.1 27439 27218 -1 - 222 hypothetical protein - none -
fig|6666666.229899.peg.32 CDS CP012959.1 28246 27917 -1 - 330 putative single stranded DNA-binding protien - none -
fig|6666666.229899.peg.33 CDS CP012959.1 29412 28267 -3 - 1146 FIG00698503: hypothetical protein - none -
fig|6666666.229899.peg.34 CDS CP012959.1 29545 29757 1 + 213 hypothetical protein - none -
fig|6666666.229899.peg.35 CDS CP012959.1 29836 30084 1 + 249 hypothetical protein - none -
fig|6666666.229899.peg.36 CDS CP012959.1 32320 30893 -1 - 1428 Exodeoxyribonuclease I (EC 3.1.11.1) DNA Repair Base Excision
fig|6666666.229899.peg.37 CDS CP012959.1 33204 32332 -3 - 873 Integral membrane protein - none -
fig|6666666.229899.peg.38 CDS CP012959.1 37771 33281 -1 - 4491 Chromosome partition protein MukB DNA structural proteins, bacterial;
MukBEF Chromosome Condensation
fig|6666666.229899.peg.39 CDS CP012959.1 38511 37771 -3 - 741 Chromosome partition protein MukE DNA structural proteins, bacterial;
MukBEF Chromosome Condensation
fig|6666666.229899.peg.40 CDS CP012959.1 41993 38532 -2 - 3462 Putative 2-acylglycerophosphoethanolamine acyltransferase / acyl-acyl carrier protein synthetase (EC 6.2.1.20) - none -
fig|6666666.229899.peg.41 CDS CP012959.1 42145 42008 -1 - 138 hypothetical protein - none -
fig|6666666.229899.peg.42 CDS CP012959.1 43501 42173 -1 - 1329 Chromosome partition protein MukF DNA structural proteins, bacterial;
MukBEF Chromosome Condensation
fig|6666666.229899.peg.43 CDS CP012959.1 44560 43679 -1 - 882 Murein-DD-endopeptidase (EC 3.4.99.-) Peptidoglycan Biosynthesis
fig|6666666.229899.peg.44 CDS CP012959.1 45316 44708 -1 - 609 lipoprotein HlpB - none -
fig|6666666.229899.peg.45 CDS CP012959.1 45751 45464 -1 - 288 LSU ribosomal protein L25p Ribosome LSU bacterial;
Transcription repair cluster
fig|6666666.229899.peg.46 CDS CP012959.1 45965 46570 2 + 606 DedA protein DedA family of inner membrane proteins;
Uptake of selenate and selenite
fig|6666666.229899.peg.47 CDS CP012959.1 49154 46689 -2 - 2466 Glycogen phosphorylase (EC 2.4.1.1) Glycogen metabolism;
Glycogen metabolism cluster;
Maltose and Maltodextrin Utilization
fig|6666666.229899.peg.48 CDS CP012959.1 50716 49277 -1 - 1440 Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21) Glycogen metabolism;
Glycogen metabolism cluster
fig|6666666.229899.peg.49 CDS CP012959.1 52228 50918 -1 - 1311 Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27) Glycogen metabolism;
Glycogen metabolism cluster
fig|6666666.229899.peg.50 CDS CP012959.1 54264 52255 -3 - 2010 Glycogen debranching enzyme (EC 3.2.1.-) Glycogen metabolism;
Glycogen metabolism cluster
fig|6666666.229899.peg.51 CDS CP012959.1 56456 54261 -2 - 2196 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) Glycogen metabolism;
Glycogen metabolism cluster
fig|6666666.229899.peg.52 CDS CP012959.1 57013 56444 -1 - 570 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) Glycogen metabolism;
Glycogen metabolism cluster;
Maltose and Maltodextrin Utilization;
Maltose utilization cluster
fig|6666666.229899.peg.53 CDS CP012959.1 58221 57472 -3 - 750 hypothetical protein - none -
fig|6666666.229899.peg.54 CDS CP012959.1 58808 58572 -2 - 237 hypothetical protein - none -
fig|6666666.229899.peg.55 CDS CP012959.1 59974 58763 -1 - 1212 hypothetical protein - none -
fig|6666666.229899.peg.56 CDS CP012959.1 61961 60015 -2 - 1947 ABC transporter ATP-binding protein - none -
fig|6666666.229899.peg.57 CDS CP012959.1 61955 62074 2 + 120 hypothetical protein - none -
fig|6666666.229899.peg.58 CDS CP012959.1 62114 62416 2 + 303 FIG022160: hypothetical toxin - none -
fig|6666666.229899.peg.59 CDS CP012959.1 62418 62711 3 + 294 FIG045511: hypothetical antitoxin (to FIG022160: hypothetical toxin) - none -
fig|6666666.229899.peg.60 CDS CP012959.1 64100 62748 -2 - 1353 Putative dNTP triphosphohydrolase, associated with nucleotidase YfbR Purine conversions;
dNTP triphosphohydrolase protein family
fig|6666666.229899.peg.61 CDS CP012959.1 64794 64102 -3 - 693 LrgA-associated membrane protein LrgB Murein hydrolase regulation and cell death
fig|6666666.229899.peg.62 CDS CP012959.1 65153 64794 -2 - 360 Antiholin-like protein LrgA Murein hydrolase regulation and cell death
fig|6666666.229899.peg.63 CDS CP012959.1 65690 66781 2 + 1092 Integrase - none -
fig|6666666.229899.peg.64 CDS CP012959.1 67070 66891 -2 - 180 FIG050068: DNA-binding protein - none -
fig|6666666.229899.peg.65 CDS CP012959.1 67494 67093 -3 - 402 Mobile element protein - none -
fig|6666666.229899.peg.66 CDS CP012959.1 68116 67463 -1 - 654 Mobile element protein - none -
fig|6666666.229899.peg.67 CDS CP012959.1 68440 68153 -1 - 288 hypothetical protein - none -
fig|6666666.229899.peg.68 CDS CP012959.1 68668 69465 1 + 798 Mobile element protein - none -
fig|6666666.229899.peg.69 CDS CP012959.1 70454 69462 -2 - 993 Putative DNA-binding protein in cluster with Type I restriction-modification system Restriction-Modification System
fig|6666666.229899.peg.70 CDS CP012959.1 70638 71342 3 + 705 Alpha-aspartyl dipeptidase Peptidase E (EC 3.4.13.21) Dipeptidases (EC 3.4.13.-)
fig|6666666.229899.peg.71 CDS CP012959.1 72883 71426 -1 - 1458 tRNA S(4)U 4-thiouridine synthase (former ThiI) / Rhodanese-like domain required for thiamine synthesis Thiamin biosynthesis;
Thiamin biosynthesis;
tRNA modification Archaea;
tRNA modification Archaea;
tRNA modification Bacteria;
tRNA modification Bacteria
fig|6666666.229899.peg.72 CDS CP012959.1 73189 74289 1 + 1101 Cytochrome c-type protein TorY - none -
fig|6666666.229899.peg.73 CDS CP012959.1 74350 76830 1 + 2481 Trimethylamine-N-oxide reductase (EC 1.6.6.9) - none -
fig|6666666.229899.peg.74 CDS CP012959.1 77680 76901 -1 - 780 Protein of unknown function DUF419 - none -
fig|6666666.229899.peg.75 CDS CP012959.1 77910 79367 3 + 1458 2-oxoglutarate/malate translocator - none -
fig|6666666.229899.peg.76 CDS CP012959.1 79582 79836 1 + 255 RelB/StbD replicon stabilization protein (antitoxin to RelE/StbE) Toxin-antitoxin replicon stabilization systems
fig|6666666.229899.peg.77 CDS CP012959.1 79833 79985 3 + 153 StbE replicon stabilization toxin - none -
fig|6666666.229899.peg.78 CDS CP012959.1 79969 80115 1 + 147 RelE/StbE replicon stabilization toxin Toxin-antitoxin replicon stabilization systems
fig|6666666.229899.peg.79 CDS CP012959.1 80913 80128 -3 - 786 tRNA pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses;
tRNA modification Archaea;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229899.peg.80 CDS CP012959.1 81466 81074 -1 - 393 SSU ribosomal protein S9p (S16e) Ribosome SSU bacterial
fig|6666666.229899.peg.81 CDS CP012959.1 81911 81483 -2 - 429 LSU ribosomal protein L13p (L13Ae) Ribosome LSU bacterial
fig|6666666.229899.peg.82 CDS CP012959.1 82749 82153 -3 - 597 hypothetical protein - none -
fig|6666666.229899.peg.83 CDS CP012959.1 84741 82762 -3 - 1980 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) DNA repair, bacterial RecBCD pathway
fig|6666666.229899.peg.84 CDS CP012959.1 88445 84741 -2 - 3705 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) DNA repair, bacterial RecBCD pathway
fig|6666666.229899.peg.85 CDS CP012959.1 88833 88477 -3 - 357 DsrE-related protein - none -
fig|6666666.229899.peg.86 CDS CP012959.1 89788 89258 -1 - 531 3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabA form (EC 4.2.1.59) Fatty Acid Biosynthesis FASII
fig|6666666.229899.peg.87 CDS CP012959.1 91715 89931 -2 - 1785 ATP-dependent protease La (EC 3.4.21.53) Type II Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229899.peg.88 CDS CP012959.1 91862 92308 2 + 447 Macrodomain Ter protein YcbG - none -
fig|6666666.229899.peg.89 CDS CP012959.1 92584 92375 -1 - 210 Cold shock protein CspD Cold shock, CspA family of proteins
fig|6666666.229899.peg.90 CDS CP012959.1 92939 92775 -2 - 165 hypothetical protein - none -
fig|6666666.229899.peg.91 CDS CP012959.1 93703 92990 -1 - 714 tRNA pseudouridine synthase C (EC 4.2.1.70) RNA pseudouridine syntheses;
tRNA modification Bacteria
fig|6666666.229899.peg.92 CDS CP012959.1 94014 93700 -3 - 315 Hypothetical protein YqcC (clustered with tRNA pseudouridine synthase C) - none -
fig|6666666.229899.peg.93 CDS CP012959.1 94110 94904 3 + 795 Zn-ribbon-containing, possibly nucleic-acid-binding protein - none -
fig|6666666.229899.peg.94 CDS CP012959.1 94913 95752 2 + 840 NADPH dependent preQ0 reductase (EC 1.7.1.13) - none -
fig|6666666.229899.peg.95 CDS CP012959.1 97054 95804 -1 - 1251 Phosphoglycerate transport system transcriptional regulatory protein PgtA Phosphoglycerate transport system
fig|6666666.229899.peg.96 CDS CP012959.1 97643 97047 -2 - 597 Phosphoglycerate transport system sensor protein PgtB (EC 2.7.3.-) Phosphoglycerate transport system
fig|6666666.229899.peg.97 CDS CP012959.1 98940 97600 -3 - 1341 Phosphoglycerate transport system sensor protein PgtB (EC 2.7.3.-) Phosphoglycerate transport system
fig|6666666.229899.peg.98 CDS CP012959.1 99086 98937 -2 - 150 Phosphoglycerate transport regulatory protein PgtC Phosphoglycerate transport system
fig|6666666.229899.peg.99 CDS CP012959.1 99117 99491 3 + 375 hypothetical protein - none -
fig|6666666.229899.peg.100 CDS CP012959.1 99488 100294 2 + 807 Mobile element protein - none -
fig|6666666.229899.peg.101 CDS CP012959.1 101444 100323 -2 - 1122 Phosphoglycerate transport regulatory protein PgtC Phosphoglycerate transport system
fig|6666666.229899.peg.102 CDS CP012959.1 101818 102816 1 + 999 ABC-type Fe3+ transport system, periplasmic component - none -
fig|6666666.229899.peg.103 CDS CP012959.1 102838 103917 1 + 1080 Thiamin ABC transporter, ATPase component Thiamin biosynthesis
fig|6666666.229899.peg.104 CDS CP012959.1 103920 105614 3 + 1695 Ferric iron ABC transporter, permease protein Iron acquisition in Streptococcus
fig|6666666.229899.peg.105 CDS CP012959.1 105636 106694 3 + 1059 Ferric iron ABC transporter, ATP-binding protein Iron acquisition in Streptococcus
fig|6666666.229899.peg.106 CDS CP012959.1 107257 106820 -1 - 438 Putative transporting ATPase - none -
fig|6666666.229899.peg.107 CDS CP012959.1 109405 107453 -1 - 1953 Cell division protein FtsH (EC 3.4.24.-) Bacterial Cell Division;
Cell division-ribosomal stress proteins cluster;
Folate biosynthesis cluster
fig|6666666.229899.peg.108 CDS CP012959.1 110141 109512 -2 - 630 Cell division protein FtsJ / Ribosomal RNA large subunit methyltransferase E (EC 2.1.1.-) ## LSU rRNA Um2552 Bacterial Cell Division;
RNA methylation
fig|6666666.229899.peg.109 CDS CP012959.1 111145 110276 -1 - 870 Formyltetrahydrofolate deformylase (EC 3.5.1.10) 5-FCL-like protein;
One-carbon metabolism by tetrahydropterines
fig|6666666.229899.peg.110 CDS CP012959.1 111580 111182 -1 - 399 DNA-binding protein H-NS - none -
fig|6666666.229899.peg.111 CDS CP012959.1 112021 113553 1 + 1533 Na+/H+ antiporter - none -
fig|6666666.229899.peg.112 CDS CP012959.1 114293 113688 -2 - 606 TETRATRICOPEPTIDE REPEAT FAMILY PROTEIN - none -
fig|6666666.229899.peg.113 CDS CP012959.1 115081 114404 -1 - 678 FIG00904286: hypothetical protein - none -
fig|6666666.229899.peg.114 CDS CP012959.1 115222 115575 1 + 354 Putative translation initiation inhibitor, yjgF family - none -
fig|6666666.229899.peg.115 CDS CP012959.1 117161 115617 -2 - 1545 hypothetical protein - none -
fig|6666666.229899.peg.116 CDS CP012959.1 118117 117164 -1 - 954 Glycosyltransferase - none -
fig|6666666.229899.peg.117 CDS CP012959.1 119151 118261 -3 - 891 hypothetical protein - none -
fig|6666666.229899.peg.118 CDS CP012959.1 121199 119154 -2 - 2046 DNA polymerase III subunits gamma and tau (EC 2.7.7.7) DNA processing cluster
fig|6666666.229899.peg.119 CDS CP012959.1 121843 121232 -1 - 612 Adenine phosphoribosyltransferase (EC 2.4.2.7) Purine conversions;
cAMP signaling in bacteria
fig|6666666.229899.peg.120 CDS CP012959.1 122821 121865 -1 - 957 Lipid A biosynthesis (KDO) 2-(lauroyl)-lipid IVA acyltransferase (EC 2.3.1.-) KDO2-Lipid A biosynthesis
fig|6666666.229899.peg.121 CDS CP012959.1 123704 122937 -2 - 768 Putative membrane protein YfcA - none -
fig|6666666.229899.peg.122 CDS CP012959.1 124580 123708 -2 - 873 Murein endopeptidase - none -
fig|6666666.229899.peg.123 CDS CP012959.1 125674 124601 -1 - 1074 Chorismate synthase (EC 4.2.3.5) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229899.peg.124 CDS CP012959.1 129019 125696 -1 - 3324 Potassium efflux system KefA protein / Small-conductance mechanosensitive channel Potassium homeostasis
fig|6666666.229899.peg.125 CDS CP012959.1 130443 129028 -3 - 1416 O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229899.peg.126 CDS CP012959.1 131066 130449 -2 - 618 SeqA protein, negative modulator of initiation of replication - none -
fig|6666666.229899.peg.127 CDS CP012959.1 131153 131953 2 + 801 Esterase ybfF (EC 3.1.-.-) - none -
fig|6666666.229899.peg.128 CDS CP012959.1 132373 132897 1 + 525 Flavodoxin 1 Flavodoxin
fig|6666666.229899.peg.129 CDS CP012959.1 132916 133356 1 + 441 Ferric uptake regulation protein FUR Bacterial RNA-metabolizing Zn-dependent hydrolases;
Oxidative stress
fig|6666666.229899.peg.130 CDS CP012959.1 133524 136187 3 + 2664 DNA gyrase subunit A (EC 5.99.1.3) Cell Division Subsystem including YidCD;
DNA gyrase subunits;
DNA replication cluster 1;
DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.229899.peg.131 CDS CP012959.1 136255 136605 1 + 351 FIG00782386: hypothetical protein - none -
fig|6666666.229899.peg.132 CDS CP012959.1 136956 136639 -3 - 318 Translation initiation factor SUI1-related protein Translation initiation factors bacterial
fig|6666666.229899.peg.133 CDS CP012959.1 137654 136962 -2 - 693 Orotidine 5@1-phosphate decarboxylase (EC 4.1.1.23) De Novo Pyrimidine Synthesis;
Riboflavin synthesis cluster
fig|6666666.229899.peg.134 CDS CP012959.1 138874 137684 -1 - 1191 Heat shock (predicted periplasmic) protein YciM, precursor Osmotic stress cluster
fig|6666666.229899.peg.135 CDS CP012959.1 139170 138874 -3 - 297 Inner membrane protein yciS - none -
fig|6666666.229899.peg.136 CDS CP012959.1 139556 139269 -2 - 288 Integration host factor beta subunit DNA structural proteins, bacterial
fig|6666666.229899.peg.137 CDS CP012959.1 141264 139618 -3 - 1647 SSU ribosomal protein S1p Cell division-ribosomal stress proteins cluster;
Ribosome SSU bacterial
fig|6666666.229899.peg.138 CDS CP012959.1 142039 141362 -1 - 678 Cytidylate kinase (EC 2.7.4.25) pyrimidine conversions
fig|6666666.229899.peg.139 CDS CP012959.1 142925 142032 -2 - 894 Membrane protein LAPB - none -
fig|6666666.229899.peg.140 CDS CP012959.1 143218 145584 1 + 2367 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229899.peg.141 CDS CP012959.1 145662 148436 3 + 2775 Probable zinc protease pqqL (EC 3.4.99.-) - none -
fig|6666666.229899.peg.142 CDS CP012959.1 148835 148503 -2 - 333 Branched-chain amino acid transport protein azlD - none -
fig|6666666.229899.peg.143 CDS CP012959.1 149564 148836 -2 - 729 Branched-chain amino acid transport protein AzlC - none -
fig|6666666.229899.peg.144 CDS CP012959.1 150501 149569 -3 - 933 Transcriptional activator MetR LysR-family proteins in Escherichia coli;
LysR-family proteins in Salmonella enterica Typhimurium;
Methionine Biosynthesis
fig|6666666.229899.peg.145 CDS CP012959.1 150792 153068 3 + 2277 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) Methionine Biosynthesis
fig|6666666.229899.peg.146 CDS CP012959.1 154059 153766 -3 - 294 CRISPR-associated protein Cas2 CRISPRs
fig|6666666.229899.peg.147 CDS CP012959.1 155076 154063 -3 - 1014 CRISPR-associated protein Cas1 CRISPRs
fig|6666666.229899.peg.148 CDS CP012959.1 156383 155124 -2 - 1260 hypothetical protein - none -
fig|6666666.229899.peg.149 CDS CP012959.1 156968 156438 -2 - 531 hypothetical protein - none -
fig|6666666.229899.peg.150 CDS CP012959.1 157678 157031 -1 - 648 CRISPR-associated RecB family exonuclease Cas4 / CRISPR-associated protein Cas1 CRISPRs
fig|6666666.229899.peg.151 CDS CP012959.1 158747 157854 -2 - 894 CRISPR-associated protein, Csd2 family CRISPRs
fig|6666666.229899.peg.152 CDS CP012959.1 160802 158769 -2 - 2034 CRISPR-associated protein, Csd1 family CRISPRs
fig|6666666.229899.peg.153 CDS CP012959.1 161578 160799 -1 - 780 CRISPR-associated protein, Cas5d family CRISPRs
fig|6666666.229899.peg.154 CDS CP012959.1 164052 161587 -3 - 2466 CRISPR-associated helicase Cas3 CRISPRs
fig|6666666.229899.peg.155 CDS CP012959.1 164252 167185 2 + 2934 Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42) Ammonia assimilation;
CBSS-316057.3.peg.3521
fig|6666666.229899.peg.156 CDS CP012959.1 167520 167221 -3 - 300 Putative transcriptional regulator - none -
fig|6666666.229899.peg.157 CDS CP012959.1 167867 167517 -2 - 351 YPPCP.09C homologue - none -
fig|6666666.229899.peg.158 CDS CP012959.1 169637 168054 -2 - 1584 Peptide chain release factor 3 Translation termination factors bacterial
fig|6666666.229899.peg.159 CDS CP012959.1 169707 169823 3 + 117 hypothetical protein - none -
fig|6666666.229899.peg.160 CDS CP012959.1 169994 170821 2 + 828 Nucleoside-diphosphate-sugar epimerases - none -
fig|6666666.229899.peg.161 CDS CP012959.1 170909 172246 2 + 1338 Argininosuccinate synthase (EC 6.3.4.5) - none -
fig|6666666.229899.peg.162 CDS CP012959.1 172437 172682 3 + 246 FIG00696862: hypothetical protein - none -
fig|6666666.229899.peg.163 CDS CP012959.1 172915 174684 1 + 1770 Gamma-glutamyltranspeptidase (EC 2.3.2.2) Glutathione: Biosynthesis and gamma-glutamyl cycle
fig|6666666.229899.peg.164 CDS CP012959.1 175751 174810 -2 - 942 Sensory histidine kinase QseC Orphan regulatory proteins
fig|6666666.229899.peg.165 CDS CP012959.1 176186 175776 -2 - 411 Sensory histidine kinase QseC Orphan regulatory proteins
fig|6666666.229899.peg.166 CDS CP012959.1 176619 176173 -3 - 447 Two-component system response regulator QseB Orphan regulatory proteins
fig|6666666.229899.peg.167 CDS CP012959.1 176833 176588 -1 - 246 Two-component system response regulator QseB Orphan regulatory proteins
fig|6666666.229899.peg.168 CDS CP012959.1 176949 176818 -3 - 132 hypothetical protein - none -
fig|6666666.229899.peg.169 CDS CP012959.1 177387 176971 -3 - 417 Protein ygiW precursor - none -
fig|6666666.229899.peg.170 CDS CP012959.1 177759 178676 3 + 918 formate dehydrogenase formation protein FdhE Formate hydrogenase
fig|6666666.229899.peg.171 CDS CP012959.1 180848 178872 -2 - 1977 2@1,3@1-cyclic-nucleotide 2@1-phosphodiesterase (EC 3.1.4.16) Purine conversions;
pyrimidine conversions
fig|6666666.229899.peg.172 CDS CP012959.1 181078 181977 1 + 900 Iron compound ABC uptake transporter substrate-binding protein PiuA - none -
fig|6666666.229899.peg.173 CDS CP012959.1 182037 183002 3 + 966 Ferric anguibactin transport system permease protein fatD - none -
fig|6666666.229899.peg.174 CDS CP012959.1 183010 183933 1 + 924 Ferric vibriobactin, enterobactin transport system, permease protein VctG (TC 3.A.1.14.6) - none -
fig|6666666.229899.peg.175 CDS CP012959.1 183946 184704 1 + 759 Iron(III) dicitrate transport ATP-binding protein FecE (TC 3.A.1.14.1) - none -
fig|6666666.229899.peg.176 CDS CP012959.1 184708 184845 1 + 138 hypothetical protein - none -
fig|6666666.229899.peg.177 CDS CP012959.1 186343 184811 -1 - 1533 Cell wall endopeptidase, family M23/M37 Glutaredoxins
fig|6666666.229899.peg.178 CDS CP012959.1 186531 187304 3 + 774 Zinc ABC transporter, ATP-binding protein ZnuC - none -
fig|6666666.229899.peg.179 CDS CP012959.1 187316 188119 2 + 804 Zinc ABC transporter, inner membrane permease protein ZnuB - none -
fig|6666666.229899.peg.180 CDS CP012959.1 189868 188495 -1 - 1374 sodium-dependent transporter - none -
fig|6666666.229899.peg.181 CDS CP012959.1 190528 189893 -1 - 636 Endonuclease III (EC 4.2.99.18) DNA Repair Base Excision
fig|6666666.229899.peg.182 CDS CP012959.1 191460 190675 -3 - 786 Electron transport complex protein RnfE Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229899.peg.183 CDS CP012959.1 192073 191453 -1 - 621 Electron transport complex protein RnfG Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229899.peg.184 CDS CP012959.1 193159 192080 -1 - 1080 Electron transport complex protein RnfD Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229899.peg.185 CDS CP012959.1 195686 193170 -2 - 2517 Electron transport complex protein RnfC Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229899.peg.186 CDS CP012959.1 196277 195687 -2 - 591 Electron transport complex protein RnfB Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229899.peg.187 CDS CP012959.1 196858 196277 -1 - 582 Electron transport complex protein RnfA Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229899.peg.188 CDS CP012959.1 197936 197049 -2 - 888 Cell division inhibitor CBSS-83333.1.peg.946;
Persister Cells
fig|6666666.229899.peg.189 CDS CP012959.1 198427 197960 -1 - 468 Arginine pathway regulatory protein ArgR, repressor of arg regulon Arginine Deiminase Pathway;
Arginine and Ornithine Degradation
fig|6666666.229899.peg.190 CDS CP012959.1 198452 198574 2 + 123 hypothetical protein - none -
fig|6666666.229899.peg.191 CDS CP012959.1 198612 199625 3 + 1014 Malate dehydrogenase (EC 1.1.1.37) Serine-glyoxylate cycle;
TCA Cycle
fig|6666666.229899.peg.192 CDS CP012959.1 200521 199781 -1 - 741 FIG00698611: hypothetical protein - none -
fig|6666666.229899.peg.193 CDS CP012959.1 201887 200868 -2 - 1020 Branched-chain amino acid aminotransferase (EC 2.6.1.42) Alanine biosynthesis;
Pyruvate Alanine Serine Interconversions
fig|6666666.229899.peg.194 CDS CP012959.1 202349 203254 2 + 906 Glycine cleavage system transcriptional activator GcvA LysR-family proteins in Escherichia coli;
Orphan regulatory proteins
fig|6666666.229899.peg.195 CDS CP012959.1 203274 204335 3 + 1062 LSU rRNA 2@1-O-methyl-C2498 methyltransferase RlmM RNA methylation
fig|6666666.229899.peg.196 CDS CP012959.1 204452 204904 2 + 453 Ribonucleotide reductase transcriptional regulator NrdR Ribonucleotide reduction
fig|6666666.229899.peg.197 CDS CP012959.1 204904 206028 1 + 1125 Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster;
Riboflavin synthesis cluster
fig|6666666.229899.peg.198 CDS CP012959.1 206037 207065 3 + 1029 Outer membrane stress sensor protease DegS Periplasmic Stress Response;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229899.peg.199 CDS CP012959.1 207074 207670 2 + 597 Nucleotidase YfbR, HD superfamily Housecleaning nucleoside triphosphate pyrophosphatases
fig|6666666.229899.peg.200 CDS CP012959.1 209134 207737 -1 - 1398 Arsenic efflux pump protein Arsenic resistance
fig|6666666.229899.peg.201 CDS CP012959.1 210080 209301 -2 - 780 DNA-binding domain of ModE / Molybdate-binding domain of ModE Molybdenum cofactor biosynthesis;
Molybdenum cofactor biosynthesis
fig|6666666.229899.peg.202 CDS CP012959.1 210308 211072 2 + 765 Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229899.peg.203 CDS CP012959.1 211151 211879 2 + 729 Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229899.peg.204 CDS CP012959.1 211866 212927 3 + 1062 Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229899.peg.205 CDS CP012959.1 214562 213072 -2 - 1491 Cytosol aminopeptidase PepA (EC 3.4.11.1) Aminopeptidases (EC 3.4.11.-);
CBSS-208964.1.peg.3826;
Dehydrogenase complexes
fig|6666666.229899.peg.206 CDS CP012959.1 214699 215817 1 + 1119 FIG000988: Predicted permease CBSS-208964.1.peg.3826
fig|6666666.229899.peg.207 CDS CP012959.1 215822 216889 2 + 1068 FIG000906: Predicted Permease CBSS-208964.1.peg.3826
fig|6666666.229899.peg.208 CDS CP012959.1 217064 217948 2 + 885 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) 5-FCL-like protein;
Methionine Biosynthesis;
One-carbon metabolism by tetrahydropterines;
Serine-glyoxylate cycle
fig|6666666.229899.peg.209 CDS CP012959.1 218098 218913 1 + 816 Shikimate 5-dehydrogenase I gamma (EC 1.1.1.25) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229899.peg.210 CDS CP012959.1 222723 221518 -3 - 1206 hypothetical protein - none -
fig|6666666.229899.peg.211 CDS CP012959.1 224181 223168 -3 - 1014 [NiFe] hydrogenase metallocenter assembly protein HypE G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229899.peg.212 CDS CP012959.1 225293 224181 -2 - 1113 [NiFe] hydrogenase metallocenter assembly protein HypD G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229899.peg.213 CDS CP012959.1 226129 225320 -1 - 810 [NiFe] hydrogenase nickel incorporation-associated protein HypB G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229899.peg.214 CDS CP012959.1 226831 226208 -1 - 624 ATPase component NikO of energizing module of nickel ECF transporter Transport of Nickel and Cobalt
fig|6666666.229899.peg.215 CDS CP012959.1 227493 226828 -3 - 666 ATPase component NikO of energizing module of nickel ECF transporter Transport of Nickel and Cobalt
fig|6666666.229899.peg.216 CDS CP012959.1 228143 227490 -2 - 654 Substrate-specific component NikM of nickel ECF transporter Transport of Nickel and Cobalt
fig|6666666.229899.peg.217 CDS CP012959.1 228646 228143 -1 - 504 Additional component NikL of nickel ECF transporter Transport of Nickel and Cobalt
fig|6666666.229899.peg.218 CDS CP012959.1 229348 228653 -1 - 696 Additional periplasmic component NikK of nickel ECF transporter Transport of Nickel and Cobalt
fig|6666666.229899.peg.219 CDS CP012959.1 230219 229527 -2 - 693 5@1-methylthioadenosine nucleosidase (EC 3.2.2.16) / S-adenosylhomocysteine nucleosidase (EC 3.2.2.9) Adenosyl nucleosidases;
Adenosyl nucleosidases;
Methionine Biosynthesis;
Methionine Degradation;
Polyamine Metabolism
fig|6666666.229899.peg.220 CDS CP012959.1 230883 230236 -3 - 648 Thiol-disulfide isomerase and thioredoxins - none -
fig|6666666.229899.peg.221 CDS CP012959.1 232637 230916 -2 - 1722 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) DNA Repair Base Excision;
DNA repair, bacterial RecFOR pathway
fig|6666666.229899.peg.222 CDS CP012959.1 233333 232650 -2 - 684 Thiol:disulfide interchange protein DsbC Periplasmic disulfide interchange
fig|6666666.229899.peg.223 CDS CP012959.1 233417 233578 2 + 162 hypothetical protein - none -
fig|6666666.229899.peg.224 CDS CP012959.1 233697 234599 3 + 903 Peptide chain release factor 2; programmed frameshift-containing Programmed frameshift;
Programmed frameshift;
Translation termination factors bacterial
fig|6666666.229899.peg.225 CDS CP012959.1 234656 236164 2 + 1509 Lysyl-tRNA synthetase (class II) (EC 6.1.1.6) tRNA aminoacylation, Lys
fig|6666666.229899.peg.226 CDS CP012959.1 238042 238182 1 + 141 Mobile element protein - none -
fig|6666666.229899.peg.227 CDS CP012959.1 238265 238405 2 + 141 Mobile element protein - none -
fig|6666666.229899.peg.228 CDS CP012959.1 238544 238693 2 + 150 Mobile element protein - none -
fig|6666666.229899.peg.229 CDS CP012959.1 240631 239288 -1 - 1344 putative hexose phosphate transport protein - none -
fig|6666666.229899.peg.230 CDS CP012959.1 241452 240649 -3 - 804 Inositol-1-monophosphatase (EC 3.1.3.25) - none -
fig|6666666.229899.peg.231 CDS CP012959.1 241716 242546 3 + 831 5-deoxy-glucuronate isomerase (EC 5.3.1.-) Inositol catabolism
fig|6666666.229899.peg.232 CDS CP012959.1 243145 243282 1 + 138 hypothetical protein - none -
fig|6666666.229899.peg.233 CDS CP012959.1 243432 243313 -3 - 120 hypothetical protein - none -
fig|6666666.229899.peg.234 CDS CP012959.1 244631 243477 -2 - 1155 hypothetical protein - none -
fig|6666666.229899.peg.235 CDS CP012959.1 245698 244631 -1 - 1068 Probable phospholipase protein - none -
fig|6666666.229899.peg.236 CDS CP012959.1 246834 245695 -3 - 1140 Probable phospholipase protein - none -
fig|6666666.229899.peg.237 CDS CP012959.1 249060 246838 -3 - 2223 VgrG-3 protein - none -
fig|6666666.229899.peg.238 CDS CP012959.1 249227 249057 -2 - 171 hypothetical protein - none -
fig|6666666.229899.peg.239 CDS CP012959.1 249435 249569 3 + 135 hypothetical protein - none -
fig|6666666.229899.peg.240 CDS CP012959.1 249758 250744 2 + 987 Fructose repressor FruR, LacI family Fructose utilization
fig|6666666.229899.peg.241 CDS CP012959.1 251441 250728 -2 - 714 SanA protein - none -
fig|6666666.229899.peg.242 CDS CP012959.1 251634 252737 3 + 1104 Homoserine O-acetyltransferase (EC 2.3.1.31) Methionine Biosynthesis
fig|6666666.229899.peg.243 CDS CP012959.1 253043 254041 2 + 999 Purine nucleotide synthesis repressor Purine nucleotide synthesis regulator
fig|6666666.229899.peg.244 CDS CP012959.1 254343 254477 3 + 135 hypothetical protein - none -
fig|6666666.229899.peg.245 CDS CP012959.1 254510 254830 2 + 321 putative cytoplasmic protein - none -
fig|6666666.229899.peg.246 CDS CP012959.1 255772 254945 -1 - 828 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229899.peg.247 CDS CP012959.1 256828 255857 -1 - 972 Cys regulon transcriptional activator CysB Cysteine Biosynthesis;
LysR-family proteins in Escherichia coli
fig|6666666.229899.peg.248 CDS CP012959.1 257827 256859 -1 - 969 Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70) RNA pseudouridine syntheses
fig|6666666.229899.peg.249 CDS CP012959.1 258505 257882 -1 - 624 Hypothetical YciO protein, TsaC/YrdC paralog YrdC-YciO-Sua5 protein family
fig|6666666.229899.peg.250 CDS CP012959.1 259710 258586 -3 - 1125 Chorismate mutase I (EC 5.4.99.5) / Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) Chorismate Synthesis;
Chorismate Synthesis;
Phenylalanine and Tyrosine Branches from Chorismate;
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229899.peg.251 CDS CP012959.1 261631 259751 -1 - 1881 Signal peptide peptidase SppA (EC 3.4.21.-) - none -
fig|6666666.229899.peg.252 CDS CP012959.1 261755 262309 2 + 555 FIG002003: Protein YdjA - none -
fig|6666666.229899.peg.253 CDS CP012959.1 262534 262653 1 + 120 hypothetical protein - none -
fig|6666666.229899.peg.254 CDS CP012959.1 264220 262739 -1 - 1482 Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4) 5-FCL-like protein;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate;
TCA Cycle;
TCA Cycle
fig|6666666.229899.peg.255 CDS CP012959.1 265927 264257 -1 - 1671 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) 5-FCL-like protein;
Dehydrogenase complexes;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229899.peg.256 CDS CP012959.1 268613 265956 -2 - 2658 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) 5-FCL-like protein;
Dehydrogenase complexes;
Methionine Degradation;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229899.peg.257 CDS CP012959.1 268992 269867 3 + 876 Tellurite resistance protein TehB Tellurite resistance: Chromosomal determinants
fig|6666666.229899.peg.258 CDS CP012959.1 272734 270020 -1 - 2715 Transcriptional activator of maltose regulon, MalT Maltose and Maltodextrin Utilization;
Maltose utilization cluster
fig|6666666.229899.peg.259 CDS CP012959.1 272903 275293 2 + 2391 Maltodextrin phosphorylase (EC 2.4.1.1) Glycogen metabolism;
Maltose and Maltodextrin Utilization;
Maltose utilization cluster
fig|6666666.229899.peg.260 CDS CP012959.1 275396 277471 2 + 2076 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) Glycogen metabolism;
Glycogen metabolism cluster;
Maltose and Maltodextrin Utilization;
Maltose utilization cluster
fig|6666666.229899.peg.261 CDS CP012959.1 277493 277618 2 + 126 hypothetical protein - none -
fig|6666666.229899.peg.262 CDS CP012959.1 278157 277615 -3 - 543 Colicin V production protein - none -
fig|6666666.229899.peg.263 CDS CP012959.1 278779 278336 -1 - 444 FIG00638298: membrane protein YfbV - none -
fig|6666666.229899.peg.264 CDS CP012959.1 279047 280249 2 + 1203 Acetate kinase (EC 2.7.2.1) Fermentations: Lactate;
Fermentations: Mixed acid;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229899.peg.265 CDS CP012959.1 280319 282454 2 + 2136 Phosphate acetyltransferase (EC 2.3.1.8) Fermentations: Lactate;
Fermentations: Mixed acid;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229899.peg.266 CDS CP012959.1 282801 283163 3 + 363 hypothetical protein - none -
fig|6666666.229899.peg.267 CDS CP012959.1 283734 283234 -3 - 501 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) Folate Biosynthesis;
Folate biosynthesis cluster
fig|6666666.229899.peg.268 CDS CP012959.1 285193 283727 -1 - 1467 Poly(A) polymerase (EC 2.7.7.19) Polyadenylation bacterial
fig|6666666.229899.peg.269 CDS CP012959.1 285747 285310 -3 - 438 C4-type zinc finger protein, DksA/TraR family - none -
fig|6666666.229899.peg.270 CDS CP012959.1 286240 288474 1 + 2235 DNA internalization-related competence protein ComEC/Rec2 KDO2-Lipid A biosynthesis;
KDO2-Lipid A biosynthesis cluster 2
fig|6666666.229899.peg.271 CDS CP012959.1 288521 290269 2 + 1749 Lipid A export ATP-binding/permease protein MsbA (EC 3.6.3.25) KDO2-Lipid A biosynthesis;
KDO2-Lipid A biosynthesis cluster 2
fig|6666666.229899.peg.272 CDS CP012959.1 290288 291262 2 + 975 Tetraacyldisaccharide 4@1-kinase (EC 2.7.1.130) KDO2-Lipid A biosynthesis;
KDO2-Lipid A biosynthesis cluster 2
fig|6666666.229899.peg.273 CDS CP012959.1 291284 291463 2 + 180 FIG002473: Protein YcaR in KDO2-Lipid A biosynthesis cluster Broadly distributed proteins not in subsystems;
KDO2-Lipid A biosynthesis cluster 2
fig|6666666.229899.peg.274 CDS CP012959.1 291465 292238 3 + 774 3-deoxy-manno-octulosonate cytidylyltransferase (EC 2.7.7.38) KDO2-Lipid A biosynthesis;
KDO2-Lipid A biosynthesis cluster 2
fig|6666666.229899.peg.275 CDS CP012959.1 292367 294196 2 + 1830 Excinuclease ABC subunit C DNA repair, UvrABC system
fig|6666666.229899.peg.276 CDS CP012959.1 294392 294532 2 + 141 Autoinducer 2 (AI-2) ABC transport system, periplasmic AI-2 binding protein LsrB Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229899.peg.277 CDS CP012959.1 295674 294583 -3 - 1092 Possible ABC transporter, periplasmic substrate X binding protein precursor ABC transporter of unknown substrate X
fig|6666666.229899.peg.278 CDS CP012959.1 296545 295694 -1 - 852 Putative ABC transporter of substrate X, permease subunit II ABC transporter of unknown substrate X
fig|6666666.229899.peg.279 CDS CP012959.1 297411 296542 -3 - 870 Putative ABC transporter of substrate X, permease subunit I ABC transporter of unknown substrate X
fig|6666666.229899.peg.280 CDS CP012959.1 298478 297408 -2 - 1071 Putative ABC transporter of substrate X, ATP-binding subunit ABC transporter of unknown substrate X
fig|6666666.229899.peg.281 CDS CP012959.1 299785 298706 -1 - 1080 Selenide,water dikinase (EC 2.7.9.3) Selenocysteine metabolism;
tRNA modification Bacteria
fig|6666666.229899.peg.282 CDS CP012959.1 301175 300327 -2 - 849 filamentation induced by cAMP protein Fic-like protein - none -
fig|6666666.229899.peg.283 CDS CP012959.1 301684 301803 1 + 120 hypothetical protein - none -
fig|6666666.229899.peg.284 CDS CP012959.1 302016 301774 -3 - 243 DNA-damage-inducible protein d - none -
fig|6666666.229899.peg.285 CDS CP012959.1 303621 302197 -3 - 1425 NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) Phosphate metabolism
fig|6666666.229899.peg.286 CDS CP012959.1 305167 303632 -1 - 1536 NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2) Phosphate metabolism
fig|6666666.229899.peg.287 CDS CP012959.1 305406 306185 3 + 780 Sugar/maltose fermentation stimulation protein homolog Fermentations: Mixed acid
fig|6666666.229899.peg.288 CDS CP012959.1 306433 307620 1 + 1188 Tyrosyl-tRNA synthetase (EC 6.1.1.1) tRNA aminoacylation, Tyr
fig|6666666.229899.peg.289 CDS CP012959.1 307747 308358 1 + 612 hypothetical protein - none -
fig|6666666.229899.peg.290 CDS CP012959.1 308451 308603 3 + 153 hypothetical protein - none -
fig|6666666.229899.peg.291 CDS CP012959.1 309565 308645 -1 - 921 tRNA pseudouridine synthase B (EC 4.2.1.70) CBSS-138119.3.peg.2719;
RNA pseudouridine syntheses;
Riboflavin, FMN and FAD metabolism in plants;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229899.peg.292 CDS CP012959.1 309951 309565 -3 - 387 Ribosome-binding factor A CBSS-138119.3.peg.2719;
NusA-TFII Cluster;
Translation initiation factors bacterial
fig|6666666.229899.peg.293 CDS CP012959.1 312975 310483 -3 - 2493 Translation initiation factor 2 CBSS-138119.3.peg.2719;
NusA-TFII Cluster;
Translation initiation factors bacterial;
Universal GTPases
fig|6666666.229899.peg.294 CDS CP012959.1 314487 312991 -3 - 1497 Transcription termination protein NusA NusA-TFII Cluster;
Transcription factors bacterial
fig|6666666.229899.peg.295 CDS CP012959.1 314970 314515 -3 - 456 FIG000325: clustered with transcription termination protein NusA NusA-TFII Cluster;
Transcription factors bacterial
fig|6666666.229899.peg.296 CDS CP012959.1 315699 315881 3 + 183 hypothetical protein - none -
fig|6666666.229899.peg.298 CDS CP012959.1 324525 323452 -3 - 1074 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) - none -
fig|6666666.229899.peg.299 CDS CP012959.1 324653 325936 2 + 1284 Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8) CBSS-196164.1.peg.461;
Heme and Siroheme Biosynthesis
fig|6666666.229899.peg.300 CDS CP012959.1 328603 326012 -1 - 2592 [Protein-PII] uridylyltransferase (EC 2.7.7.59) Ammonia assimilation;
CBSS-312309.3.peg.1965
fig|6666666.229899.peg.301 CDS CP012959.1 329475 328675 -3 - 801 Methionine aminopeptidase (EC 3.4.11.18) CBSS-312309.3.peg.1965;
Translation termination factors bacterial
fig|6666666.229899.peg.302 CDS CP012959.1 329609 329950 2 + 342 probable iron binding protein from the HesB_IscA_SufA family - none -
fig|6666666.229899.peg.303 CDS CP012959.1 329952 330167 3 + 216 hypothetical protein - none -
fig|6666666.229899.peg.304 CDS CP012959.1 330213 332606 3 + 2394 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) DNA uptake cluster;
Peptidoglycan Biosynthesis;
Type IV pilus
fig|6666666.229899.peg.305 CDS CP012959.1 332905 334812 1 + 1908 High-affinity Fe2+/Pb2+ permease precursor Iron transport system including ABC transporter
fig|6666666.229899.peg.306 CDS CP012959.1 334855 335376 1 + 522 Periplasmic protein p19 involved in high-affinity Fe2+ transport Iron transport system including ABC transporter
fig|6666666.229899.peg.307 CDS CP012959.1 335514 336944 3 + 1431 Fe2+ ABC transporter, substrate binding protein Iron transport system including ABC transporter
fig|6666666.229899.peg.308 CDS CP012959.1 336947 338272 2 + 1326 Cell division protein FtsX Bacterial Cell Division
fig|6666666.229899.peg.309 CDS CP012959.1 338259 339398 3 + 1140 Fe2+ ABC transporter, permease protein 2 Iron transport system including ABC transporter
fig|6666666.229899.peg.310 CDS CP012959.1 339400 340071 1 + 672 Fe2+ ABC transporter, ATP-binding subunit Iron transport system including ABC transporter
fig|6666666.229899.peg.311 CDS CP012959.1 340061 340552 2 + 492 Possible periplasmic thiredoxin Iron transport system including ABC transporter
fig|6666666.229899.peg.312 CDS CP012959.1 340559 340870 2 + 312 Cytochrome C553 (soluble cytochrome f) Iron transport system including ABC transporter;
Soluble cytochromes and functionally related electron carriers
fig|6666666.229899.peg.313 CDS CP012959.1 341071 341736 1 + 666 Phosphoglycolate phosphatase (EC 3.1.3.18) 2-phosphoglycolate salvage;
Glycolate, glyoxylate interconversions
fig|6666666.229899.peg.314 CDS CP012959.1 341914 341714 -1 - 201 hypothetical protein - none -
fig|6666666.229899.peg.315 CDS CP012959.1 342066 343100 3 + 1035 ATPase domain protein - none -
fig|6666666.229899.peg.316 CDS CP012959.1 347236 343187 -1 - 4050 HrpA-like helicases - none -
fig|6666666.229899.peg.317 CDS CP012959.1 347622 347233 -3 - 390 COG2363 - none -
fig|6666666.229899.peg.318 CDS CP012959.1 348075 347623 -3 - 453 putative membrane protein - none -
fig|6666666.229899.peg.319 CDS CP012959.1 348077 348190 2 + 114 hypothetical protein - none -
fig|6666666.229899.peg.320 CDS CP012959.1 348529 348200 -1 - 330 Glutaredoxin-related protein Glutaredoxins
fig|6666666.229899.peg.321 CDS CP012959.1 349887 348847 -3 - 1041 Outer membrane protein A precursor Osmoregulation
fig|6666666.229899.peg.322 CDS CP012959.1 350372 353425 2 + 3054 Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD Glycolate, glyoxylate interconversions
fig|6666666.229899.peg.323 CDS CP012959.1 353435 353857 2 + 423 FIG017415: ydiI hotdog fold superfamily - none -
fig|6666666.229899.peg.324 CDS CP012959.1 353850 354914 3 + 1065 Ferrochelatase, protoheme ferro-lyase (EC 4.99.1.1) Heme and Siroheme Biosynthesis
fig|6666666.229899.peg.325 CDS CP012959.1 354955 355455 1 + 501 Thiol peroxidase, Tpx-type (EC 1.11.1.15) Thioredoxin-disulfide reductase
fig|6666666.229899.peg.326 CDS CP012959.1 355560 355447 -3 - 114 hypothetical protein - none -
fig|6666666.229899.peg.327 CDS CP012959.1 356805 355660 -3 - 1146 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism
fig|6666666.229899.peg.328 CDS CP012959.1 357664 356861 -1 - 804 Glucosamine-6-phosphate deaminase (EC 3.5.99.6) Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism
fig|6666666.229899.peg.329 CDS CP012959.1 358697 357819 -2 - 879 N-acetylneuraminate lyase (EC 4.1.3.3) Sialic Acid Metabolism
fig|6666666.229899.peg.330 CDS CP012959.1 359576 358707 -2 - 870 Sialic acid utilization regulator, RpiR family Sialic Acid Metabolism
fig|6666666.229899.peg.331 CDS CP012959.1 360473 359586 -2 - 888 N-acetylmannosamine kinase (EC 2.7.1.60) Sialic Acid Metabolism
fig|6666666.229899.peg.332 CDS CP012959.1 361188 360487 -3 - 702 N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9) Sialic Acid Metabolism
fig|6666666.229899.peg.333 CDS CP012959.1 361430 362416 2 + 987 TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein Sialic Acid Metabolism
fig|6666666.229899.peg.334 CDS CP012959.1 362480 364330 2 + 1851 TRAP-type transport system, large permease component, predicted N-acetylneuraminate transporter / TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229899.peg.335 CDS CP012959.1 364468 365598 1 + 1131 Sialic acid-induced transmembrane protein YjhT(NanM), possible mutarotase Sialic Acid Metabolism
fig|6666666.229899.peg.336 CDS CP012959.1 365847 367313 3 + 1467 PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69) Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism;
Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229899.peg.337 CDS CP012959.1 367845 368015 3 + 171 hypothetical protein - none -
fig|6666666.229899.peg.338 CDS CP012959.1 368012 369928 2 + 1917 VgrG-3 protein - none -
fig|6666666.229899.peg.339 CDS CP012959.1 369944 371065 2 + 1122 hypothetical protein - none -
fig|6666666.229899.peg.340 CDS CP012959.1 371102 371686 2 + 585 hypothetical protein - none -
fig|6666666.229899.peg.341 CDS CP012959.1 372247 372957 1 + 711 hypothetical protein - none -
fig|6666666.229899.peg.342 CDS CP012959.1 373140 374084 3 + 945 hypothetical protein - none -
fig|6666666.229899.peg.343 CDS CP012959.1 374651 375283 2 + 633 hypothetical protein - none -
fig|6666666.229899.peg.344 CDS CP012959.1 376864 376730 -1 - 135 Mobile element protein - none -
fig|6666666.229899.peg.345 CDS CP012959.1 377177 377043 -2 - 135 hypothetical protein - none -
fig|6666666.229899.peg.346 CDS CP012959.1 377480 377659 2 + 180 hypothetical protein - none -
fig|6666666.229899.peg.347 CDS CP012959.1 379711 378488 -1 - 1224 N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family Chitin and N-acetylglucosamine utilization
fig|6666666.229899.peg.348 CDS CP012959.1 381077 379773 -2 - 1305 Glutamyl-tRNA reductase (EC 1.2.1.70) A Gammaproteobacteria Cluster Relating to Translation;
Heme and Siroheme Biosynthesis
fig|6666666.229899.peg.349 CDS CP012959.1 381964 381263 -1 - 702 Hydroxyacylglutathione hydrolase (EC 3.1.2.6) CBSS-228410.1.peg.134;
CBSS-342610.3.peg.1536;
Glutathione: Non-redox reactions;
Methylglyoxal Metabolism
fig|6666666.229899.peg.350 CDS CP012959.1 381985 382683 1 + 699 FIG005121: SAM-dependent methyltransferase (EC 2.1.1.-) CBSS-228410.1.peg.134;
CBSS-342610.3.peg.1536;
Glutathione: Non-redox reactions
fig|6666666.229899.peg.351 CDS CP012959.1 383292 382741 -3 - 552 PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69) Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism;
Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229899.peg.352 CDS CP012959.1 384233 383244 -2 - 990 PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69) Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism;
Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229899.peg.353 CDS CP012959.1 384759 384421 -3 - 339 FIG00904093: hypothetical protein - none -
fig|6666666.229899.peg.354 CDS CP012959.1 384935 386140 2 + 1206 Mannose-6-phosphate isomerase (EC 5.3.1.8) Mannose Metabolism
fig|6666666.229899.peg.355 CDS CP012959.1 386236 387999 1 + 1764 FIG00696060: hypothetical protein - none -
fig|6666666.229899.peg.356 CDS CP012959.1 388169 388579 2 + 411 probable membrane protein YPO3565 - none -
fig|6666666.229899.peg.357 CDS CP012959.1 388707 388537 -3 - 171 hypothetical protein - none -
fig|6666666.229899.peg.358 CDS CP012959.1 388770 390152 3 + 1383 Outer membrane stress sensor protease DegQ, serine protease Periplasmic Stress Response;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229899.peg.359 CDS CP012959.1 391413 390343 -3 - 1071 Outer membrane protein A precursor Osmoregulation
fig|6666666.229899.peg.360 CDS CP012959.1 393682 391640 -1 - 2043 Excinuclease ABC subunit B DNA repair, UvrABC system
fig|6666666.229899.peg.361 CDS CP012959.1 395325 394294 -3 - 1032 putative membrane protein - none -
fig|6666666.229899.peg.362 CDS CP012959.1 396005 395340 -2 - 666 putative exported protein - none -
fig|6666666.229899.peg.363 CDS CP012959.1 396342 398054 3 + 1713 ABC transporter ATP-binding protein - none -
fig|6666666.229899.peg.364 CDS CP012959.1 399045 398158 -3 - 888 putative adhesin/invasin - none -
fig|6666666.229899.peg.365 CDS CP012959.1 399536 401434 2 + 1899 Topoisomerase IV subunit B (EC 5.99.1.-) DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.229899.peg.366 CDS CP012959.1 401637 401473 -3 - 165 hypothetical protein - none -
fig|6666666.229899.peg.367 CDS CP012959.1 401884 402018 1 + 135 hypothetical protein - none -
fig|6666666.229899.peg.368 CDS CP012959.1 402122 404281 2 + 2160 Topoisomerase IV subunit A (EC 5.99.1.-) DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.229899.peg.369 CDS CP012959.1 404565 405176 3 + 612 Glutathione S-transferase (EC 2.5.1.18) Glutathione: Non-redox reactions
fig|6666666.229899.peg.370 CDS CP012959.1 406065 405241 -3 - 825 Outer membrane protein A precursor Osmoregulation
fig|6666666.229899.peg.371 CDS CP012959.1 407313 406255 -3 - 1059 Possible protease sohB (EC 3.4.21.-) - none -
fig|6666666.229899.peg.372 CDS CP012959.1 407506 408096 1 + 591 FMN-dependent NADH-azoreductase - none -
fig|6666666.229899.peg.373 CDS CP012959.1 409527 408190 -3 - 1338 NADH dehydrogenase (EC 1.6.99.3) Respiratory dehydrogenases 1;
Riboflavin synthesis cluster
fig|6666666.229899.peg.374 CDS CP012959.1 411293 409704 -2 - 1590 Glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Respiratory dehydrogenases 1
fig|6666666.229899.peg.375 CDS CP012959.1 412411 411563 -1 - 849 rRNA small subunit methyltransferase I 16S rRNA modification within P site of ribosome;
CBSS-160492.1.peg.550;
Heat shock dnaK gene cluster extended
fig|6666666.229899.peg.376 CDS CP012959.1 412488 414206 3 + 1719 LppC putative lipoprotein CBSS-160492.1.peg.550
fig|6666666.229899.peg.377 CDS CP012959.1 414216 414575 3 + 360 Predicted endonuclease distantly related to archaeal Holliday junction resolvase CBSS-160492.1.peg.550
fig|6666666.229899.peg.378 CDS CP012959.1 414588 415172 3 + 585 Phosphoheptose isomerase (EC 5.3.1.-) CBSS-160492.1.peg.550;
Capsular heptose biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.229899.peg.379 CDS CP012959.1 415237 415824 1 + 588 21 kDa hemolysin precursor CBSS-160492.1.peg.550
fig|6666666.229899.peg.380 CDS CP012959.1 416622 415930 -3 - 693 Carbonic anhydrase (EC 4.2.1.1) - none -
fig|6666666.229899.peg.381 CDS CP012959.1 416839 417909 1 + 1071 Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11) / Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) Cluster Ytf and putative sugar transporter;
Peptide methionine sulfoxide reductase;
Peptide methionine sulfoxide reductase;
Putative sugar ABC transporter (ytf cluster)
fig|6666666.229899.peg.382 CDS CP012959.1 417913 418554 1 + 642 Cytochrome c-type biogenesis protein CcdA homolog, associated with MetSO reductase Peptide methionine sulfoxide reductase
fig|6666666.229899.peg.383 CDS CP012959.1 418569 419051 3 + 483 Thiol:disulfide oxidoreductase associated with MetSO reductase Peptide methionine sulfoxide reductase
fig|6666666.229899.peg.384 CDS CP012959.1 419383 419183 -1 - 201 Mobile element protein - none -
fig|6666666.229899.peg.385 CDS CP012959.1 419542 419408 -1 - 135 Mobile element protein - none -
fig|6666666.229899.peg.386 CDS CP012959.1 419752 419549 -1 - 204 Mobile element protein - none -
fig|6666666.229899.peg.387 CDS CP012959.1 419880 420053 3 + 174 hypothetical protein - none -
fig|6666666.229899.peg.388 CDS CP012959.1 420335 420189 -2 - 147 hypothetical protein - none -
fig|6666666.229899.peg.389 CDS CP012959.1 420429 421781 3 + 1353 C4-dicarboxylate transporter DcuC (TC 2.A.61.1.1) Citrate Metabolism, Transport, and Regulation
fig|6666666.229899.peg.390 CDS CP012959.1 421811 421996 2 + 186 hypothetical protein - none -
fig|6666666.229899.peg.391 CDS CP012959.1 422037 422309 3 + 273 DNA-damage-inducible protein J DNA repair, bacterial;
Toxin-antitoxin replicon stabilization systems
fig|6666666.229899.peg.392 CDS CP012959.1 422321 422587 2 + 267 YafQ toxin protein Toxin-antitoxin replicon stabilization systems
fig|6666666.229899.peg.393 CDS CP012959.1 422619 424178 3 + 1560 GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2) Purine conversions
fig|6666666.229899.peg.394 CDS CP012959.1 425521 424571 -1 - 951 hypothetical protein - none -
fig|6666666.229899.peg.395 CDS CP012959.1 425993 425715 -2 - 279 Transthyretin-like periplasmic protein - none -
fig|6666666.229899.peg.396 CDS CP012959.1 427303 428256 1 + 954 Acetyl-coenzyme A carboxyl transferase alpha chain (EC 6.4.1.2) Fatty Acid Biosynthesis FASII
fig|6666666.229899.peg.397 CDS CP012959.1 428319 429176 3 + 858 Pyridoxal kinase (EC 2.7.1.35) Pyridoxin (Vitamin B6) Biosynthesis
fig|6666666.229899.peg.398 CDS CP012959.1 429208 430554 1 + 1347 tRNA(Ile)-lysidine synthetase (EC 6.3.4.19) Cell division-ribosomal stress proteins cluster;
Folate biosynthesis cluster;
tRNA modification Bacteria;
tRNA processing;
tRNAmodification position 34
fig|6666666.229899.peg.399 CDS CP012959.1 431913 430582 -3 - 1332 Guanine-hypoxanthine permease Purine Utilization
fig|6666666.229899.peg.400 CDS CP012959.1 432424 432038 -1 - 387 Integral membrane protein - none -
fig|6666666.229899.peg.401 CDS CP012959.1 432618 433634 3 + 1017 UDP-glucose 4-epimerase (EC 5.1.3.2) Lactose and Galactose Uptake and Utilization
fig|6666666.229899.peg.402 CDS CP012959.1 433640 433981 2 + 342 [NiFe] hydrogenase nickel incorporation protein HybF NiFe hydrogenase maturation
fig|6666666.229899.peg.403 CDS CP012959.1 433988 435277 2 + 1290 AmpG permease Recycling of Peptidoglycan Amino Acids
fig|6666666.229899.peg.404 CDS CP012959.1 435410 436054 2 + 645 Adenylate kinase (EC 2.7.4.3) Purine conversions
fig|6666666.229899.peg.405 CDS CP012959.1 436141 436254 1 + 114 hypothetical protein - none -
fig|6666666.229899.peg.406 CDS CP012959.1 437875 436502 -1 - 1374 DNA repair protein RadA DNA repair, bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229899.peg.407 CDS CP012959.1 439032 437878 -3 - 1155 Adenylate cyclase (EC 4.6.1.1) cAMP signaling in bacteria
fig|6666666.229899.peg.408 CDS CP012959.1 439197 439877 3 + 681 Phosphate transport regulator (distant homolog of PhoU) Phosphate metabolism
fig|6666666.229899.peg.409 CDS CP012959.1 439903 441168 1 + 1266 Probable low-affinity inorganic phosphate transporter Phosphate metabolism
fig|6666666.229899.peg.410 CDS CP012959.1 441237 441848 3 + 612 SH3 domain protein - none -
fig|6666666.229899.peg.411 CDS CP012959.1 441848 443125 2 + 1278 tRNA nucleotidyltransferase (EC 2.7.7.21) (EC 2.7.7.25) Polyadenylation bacterial;
tRNA nucleotidyltransferase
fig|6666666.229899.peg.412 CDS CP012959.1 443187 443813 3 + 627 Outer membrane lipoprotein LolB A Gammaproteobacteria Cluster Relating to Translation;
Lipopolysaccharide assembly;
Lipoprotein sorting system
fig|6666666.229899.peg.413 CDS CP012959.1 443810 444721 2 + 912 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148) A Gammaproteobacteria Cluster Relating to Translation;
Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.229899.peg.414 CDS CP012959.1 444762 445712 3 + 951 Ribose-phosphate pyrophosphokinase (EC 2.7.6.1) A Gammaproteobacteria Cluster Relating to Translation;
Pentose phosphate pathway;
Transcription repair cluster
fig|6666666.229899.peg.415 CDS CP012959.1 445889 446035 2 + 147 hypothetical protein - none -
fig|6666666.229899.peg.416 CDS CP012959.1 446336 447481 2 + 1146 L-lactate dehydrogenase (EC 1.1.2.3) Lactate utilization;
Respiratory dehydrogenases 1
fig|6666666.229899.peg.417 CDS CP012959.1 447723 449312 3 + 1590 L-lactate permease Lactate utilization
fig|6666666.229899.peg.418 CDS CP012959.1 449798 449466 -2 - 333 UPF0265 protein YeeX Broadly distributed proteins not in subsystems
fig|6666666.229899.peg.419 CDS CP012959.1 449823 449939 3 + 117 hypothetical protein - none -
fig|6666666.229899.peg.420 CDS CP012959.1 449998 451080 1 + 1083 Phosphoserine aminotransferase (EC 2.6.1.52) Glycine and Serine Utilization;
Pyridoxin (Vitamin B6) Biosynthesis;
Serine Biosynthesis
fig|6666666.229899.peg.421 CDS CP012959.1 451107 452426 3 + 1320 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) @ Histidinol-phosphate aminotransferase (EC 2.6.1.9) Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229899.peg.422 CDS CP012959.1 452427 452621 3 + 195 hypothetical protein - none -
fig|6666666.229899.peg.423 CDS CP012959.1 453603 452707 -3 - 897 Cobalt-zinc-cadmium resistance protein CzcD Cobalt-zinc-cadmium resistance
fig|6666666.229899.peg.424 CDS CP012959.1 454475 454675 2 + 201 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) @ Histidinol-phosphate aminotransferase (EC 2.6.1.9) Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229899.peg.425 CDS CP012959.1 454686 456017 3 + 1332 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229899.peg.426 CDS CP012959.1 456572 456105 -2 - 468 Ribonuclease HI (EC 3.1.26.4) CBSS-228410.1.peg.134;
CBSS-342610.3.peg.1536;
Ribonuclease H
fig|6666666.229899.peg.427 CDS CP012959.1 456640 457401 1 + 762 DNA polymerase III epsilon subunit (EC 2.7.7.7) CBSS-228410.1.peg.134;
CBSS-342610.3.peg.1536
fig|6666666.229899.peg.428 CDS CP012959.1 457853 458107 2 + 255 RelB/StbD replicon stabilization protein (antitoxin to RelE/StbE) Toxin-antitoxin replicon stabilization systems
fig|6666666.229899.peg.429 CDS CP012959.1 458097 458387 3 + 291 RelE/StbE replicon stabilization toxin Toxin-antitoxin replicon stabilization systems
fig|6666666.229899.peg.430 CDS CP012959.1 458787 458449 -3 - 339 conserved hypothetical protein - none -
fig|6666666.229899.peg.431 CDS CP012959.1 459128 459580 2 + 453 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) Ammonia assimilation;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229899.peg.432 CDS CP012959.1 459751 461139 1 + 1389 Putative protease - none -
fig|6666666.229899.peg.433 CDS CP012959.1 461261 461374 2 + 114 hypothetical protein - none -
fig|6666666.229899.peg.434 CDS CP012959.1 461913 462548 3 + 636 transcriptional regulator, putative - none -
fig|6666666.229899.peg.435 CDS CP012959.1 462689 462973 2 + 285 hypothetical protein - none -
fig|6666666.229899.peg.436 CDS CP012959.1 462985 464058 1 + 1074 FIG00697578: hypothetical protein - none -
fig|6666666.229899.peg.437 CDS CP012959.1 464105 465760 2 + 1656 FIG00698381: hypothetical protein - none -
fig|6666666.229899.peg.438 CDS CP012959.1 466152 467498 3 + 1347 FIG00849539: hypothetical protein - none -
fig|6666666.229899.peg.439 CDS CP012959.1 467771 468181 2 + 411 ABC-type Fe3+-hydroxamate transport system, periplasmic component - none -
fig|6666666.229899.peg.440 CDS CP012959.1 468298 468837 1 + 540 hypothetical protein - none -
fig|6666666.229899.peg.441 CDS CP012959.1 468928 470019 1 + 1092 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) CBSS-211586.1.peg.2832;
Queuosine-Archaeosine Biosynthesis;
Scaffold proteins for [4Fe-4S] cluster assembly (MRP family);
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229899.peg.442 CDS CP012959.1 471199 470063 -1 - 1137 Periplasmic aromatic amino acid aminotransferase beta precursor (EC 2.6.1.57) Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229899.peg.443 CDS CP012959.1 471382 471263 -1 - 120 hypothetical protein - none -
fig|6666666.229899.peg.444 CDS CP012959.1 471668 472819 2 + 1152 tRNA-guanine transglycosylase (EC 2.4.2.29) CBSS-211586.1.peg.2832;
Queuosine-Archaeosine Biosynthesis;
Scaffold proteins for [4Fe-4S] cluster assembly (MRP family);
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229899.peg.445 CDS CP012959.1 473111 473410 2 + 300 Preprotein translocase subunit YajC (TC 3.A.5.1.1) CBSS-211586.1.peg.2832
fig|6666666.229899.peg.446 CDS CP012959.1 473441 475291 2 + 1851 Protein-export membrane protein SecD (TC 3.A.5.1.1) CBSS-211586.1.peg.2832
fig|6666666.229899.peg.447 CDS CP012959.1 475272 476273 3 + 1002 Protein-export membrane protein SecF (TC 3.A.5.1.1) CBSS-211586.1.peg.2832
fig|6666666.229899.peg.448 CDS CP012959.1 476493 479120 3 + 2628 Iron siderophore receptor protein - none -
fig|6666666.229899.peg.449 CDS CP012959.1 479339 479199 -2 - 141 hypothetical protein - none -
fig|6666666.229899.peg.450 CDS CP012959.1 479469 482090 3 + 2622 Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) 5-FCL-like protein;
Butanol Biosynthesis;
Butanol Biosynthesis;
Fermentations: Lactate;
Fermentations: Mixed acid;
Fermentations: Mixed acid;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229899.peg.451 CDS CP012959.1 483127 482174 -1 - 954 Inositol transport system permease protein Inositol catabolism
fig|6666666.229899.peg.452 CDS CP012959.1 484683 483178 -3 - 1506 Inositol transport system ATP-binding protein Inositol catabolism
fig|6666666.229899.peg.453 CDS CP012959.1 485684 484752 -2 - 933 Inositol transport system sugar-binding protein Inositol catabolism
fig|6666666.229899.peg.454 CDS CP012959.1 486706 485768 -1 - 939 Inositol transport system sugar-binding protein Inositol catabolism
fig|6666666.229899.peg.455 CDS CP012959.1 488147 487008 -2 - 1140 Myo-inositol 2-dehydrogenase 2 (EC 1.1.1.18) Inositol catabolism
fig|6666666.229899.peg.456 CDS CP012959.1 489746 488238 -2 - 1509 Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27) Inositol catabolism
fig|6666666.229899.peg.457 CDS CP012959.1 489963 490076 3 + 114 hypothetical protein - none -
fig|6666666.229899.peg.458 CDS CP012959.1 490486 491832 1 + 1347 CRISPR-associated protein, Csy1 family CRISPRs
fig|6666666.229899.peg.459 CDS CP012959.1 491842 492801 1 + 960 CRISPR-associated protein, Csy2 family CRISPRs
fig|6666666.229899.peg.460 CDS CP012959.1 492801 493811 3 + 1011 CRISPR-associated protein, Csy3 family CRISPRs
fig|6666666.229899.peg.461 CDS CP012959.1 493814 494377 2 + 564 CRISPR-associated protein, Csy4 family CRISPRs
fig|6666666.229899.peg.462 CDS CP012959.1 497710 494423 -1 - 3288 CRISPR-associated helicase Cas3, Yersinia-type CRISPRs
fig|6666666.229899.peg.463 CDS CP012959.1 498453 497707 -3 - 747 CRISPR-associated protein Cas1 CRISPRs
fig|6666666.229899.peg.464 CDS CP012959.1 499008 499433 3 + 426 Queuosine biosynthesis QueD, PTPS-I Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229899.peg.465 CDS CP012959.1 499394 500068 2 + 675 Queuosine Biosynthesis QueE Radical SAM Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229899.peg.466 CDS CP012959.1 500191 501048 1 + 858 FIG137478: Hypothetical protein YbgI - none -
fig|6666666.229899.peg.467 CDS CP012959.1 501139 501927 1 + 789 Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9) Fatty Acid Biosynthesis FASII
fig|6666666.229899.peg.468 CDS CP012959.1 502000 503979 1 + 1980 Exoribonuclease II (EC 3.1.13.1) RNA processing and degradation, bacterial
fig|6666666.229899.peg.469 CDS CP012959.1 504580 504098 -1 - 483 Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1) Oxidative stress;
Oxidative stress;
Oxidative stress
fig|6666666.229899.peg.470 CDS CP012959.1 504788 505258 2 + 471 Membrane fusion component of tripartite multidrug resistance system Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria
fig|6666666.229899.peg.471 CDS CP012959.1 505346 505471 2 + 126 Membrane fusion component of tripartite multidrug resistance system Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria
fig|6666666.229899.peg.472 CDS CP012959.1 505505 505948 2 + 444 Membrane fusion component of tripartite multidrug resistance system Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria
fig|6666666.229899.peg.473 CDS CP012959.1 505961 507475 2 + 1515 Inner membrane component of tripartite multidrug resistance system Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria
fig|6666666.229899.peg.474 CDS CP012959.1 507619 507900 1 + 282 HipB protein Persister Cells
fig|6666666.229899.peg.475 CDS CP012959.1 508033 507854 -1 - 180 hypothetical protein - none -
fig|6666666.229899.peg.476 CDS CP012959.1 508275 508517 3 + 243 HipA protein Persister Cells
fig|6666666.229899.peg.477 CDS CP012959.1 509407 508514 -1 - 894 hypothetical protein - none -
fig|6666666.229899.peg.478 CDS CP012959.1 512338 509474 -1 - 2865 Valyl-tRNA synthetase (EC 6.1.1.9) CBSS-208964.1.peg.3826;
tRNA aminoacylation, Val
fig|6666666.229899.peg.479 CDS CP012959.1 512724 512410 -3 - 315 RNA-binding domain protein - none -
fig|6666666.229899.peg.480 CDS CP012959.1 513212 512763 -2 - 450 DNA polymerase III chi subunit (EC 2.7.7.7) CBSS-208964.1.peg.3826
fig|6666666.229899.peg.481 CDS CP012959.1 513422 514816 2 + 1395 Fumarate hydratase class II (EC 4.2.1.2) TCA Cycle
fig|6666666.229899.peg.482 CDS CP012959.1 514920 515525 3 + 606 FIG026291: Hypothetical periplasmic protein - none -
fig|6666666.229899.peg.483 CDS CP012959.1 515573 515686 2 + 114 hypothetical protein - none -
fig|6666666.229899.peg.484 CDS CP012959.1 516654 515821 -3 - 834 Ribosomal protein S6 glutaminyl transferase Ribosome biogenesis bacterial
fig|6666666.229899.peg.485 CDS CP012959.1 517479 516745 -3 - 735 Oxygen-insensitive NADPH nitroreductase (EC 1.-.-.-) - none -
fig|6666666.229899.peg.486 CDS CP012959.1 517606 517869 1 + 264 Glutaredoxin 1 Glutaredoxins;
Glutathione: Redox cycle
fig|6666666.229899.peg.487 CDS CP012959.1 518327 518133 -2 - 195 Beta-galactosidase (EC 3.2.1.23) Galactosylceramide and Sulfatide metabolism;
Lactose and Galactose Uptake and Utilization;
Lactose utilization
fig|6666666.229899.peg.488 CDS CP012959.1 518622 519836 3 + 1215 Tyrosine-specific transport protein - none -
fig|6666666.229899.peg.489 CDS CP012959.1 520772 519906 -2 - 867 hypothetical protein - none -
fig|6666666.229899.peg.490 CDS CP012959.1 521116 520772 -1 - 345 hypothetical protein - none -
fig|6666666.229899.peg.491 CDS CP012959.1 523207 521129 -1 - 2079 hypothetical protein - none -
fig|6666666.229899.peg.492 CDS CP012959.1 523596 523228 -3 - 369 hypothetical protein - none -
fig|6666666.229899.peg.493 CDS CP012959.1 524603 523647 -2 - 957 hypothetical protein - none -
fig|6666666.229899.peg.494 CDS CP012959.1 525966 525271 -3 - 696 L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) L-ascorbate utilization (and related gene clusters)
fig|6666666.229899.peg.495 CDS CP012959.1 526820 525960 -2 - 861 L-xylulose 5-phosphate 3-epimerase (EC 5.1.3.-) L-ascorbate utilization (and related gene clusters)
fig|6666666.229899.peg.496 CDS CP012959.1 527610 526861 -3 - 750 Ascorbate utilization transcriptional regulator UlaR, HTH-type L-ascorbate utilization (and related gene clusters)
fig|6666666.229899.peg.497 CDS CP012959.1 528793 527702 -1 - 1092 Probable L-ascorbate-6-phosphate lactonase UlaG (EC 3.1.1.-) (L-ascorbate utilization protein G) L-ascorbate utilization (and related gene clusters)
fig|6666666.229899.peg.498 CDS CP012959.1 529139 530911 2 + 1773 Ascorbate-specific PTS system, EIIC component L-ascorbate utilization (and related gene clusters)
fig|6666666.229899.peg.499 CDS CP012959.1 530966 531427 2 + 462 Ascorbate-specific PTS system, EIIA component (EC 2.7.1.-) L-ascorbate utilization (and related gene clusters)
fig|6666666.229899.peg.500 CDS CP012959.1 531504 532178 3 + 675 3-keto-L-gulonate 6-phosphate decarboxylase L-ascorbate utilization (and related gene clusters)
fig|6666666.229899.peg.501 CDS CP012959.1 532900 532247 -1 - 654 hypothetical protein - none -
fig|6666666.229899.peg.502 CDS CP012959.1 534103 532910 -1 - 1194 hypothetical protein - none -
fig|6666666.229899.peg.503 CDS CP012959.1 535261 534140 -1 - 1122 hypothetical protein - none -
fig|6666666.229899.peg.504 CDS CP012959.1 537193 535277 -1 - 1917 VgrG-3 protein - none -
fig|6666666.229899.peg.505 CDS CP012959.1 537360 537190 -3 - 171 hypothetical protein - none -
fig|6666666.229899.peg.506 CDS CP012959.1 539834 537525 -2 - 2310 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) DNA uptake cluster;
Peptidoglycan Biosynthesis;
Type IV pilus
fig|6666666.229899.peg.507 CDS CP012959.1 540745 540002 -1 - 744 Putative membrane protein YeiH - none -
fig|6666666.229899.peg.508 CDS CP012959.1 546956 541185 -2 - 5772 FIG00904191: hypothetical protein - none -
fig|6666666.229899.peg.509 CDS CP012959.1 548470 547022 -1 - 1449 TldD protein, part of TldE/TldD proteolytic complex CBSS-354.1.peg.2917;
Putative TldE-TldD proteolytic complex
fig|6666666.229899.peg.510 CDS CP012959.1 549627 548767 -3 - 861 Molybdenum transport system protein ModD Molybdenum cofactor biosynthesis
fig|6666666.229899.peg.511 CDS CP012959.1 550238 549624 -2 - 615 ABC transporter ATP-binding protein - none -
fig|6666666.229899.peg.512 CDS CP012959.1 551044 550241 -1 - 804 Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229899.peg.513 CDS CP012959.1 551747 551013 -2 - 735 Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229899.peg.514 CDS CP012959.1 552226 552411 1 + 186 Mobile element protein - none -
fig|6666666.229899.peg.515 CDS CP012959.1 552453 552701 3 + 249 Mobile element protein - none -
fig|6666666.229899.peg.516 CDS CP012959.1 554221 552788 -1 - 1434 Putative GTP-binding protein YdgA - none -
fig|6666666.229899.peg.517 CDS CP012959.1 554510 556411 2 + 1902 Chaperone protein DnaK GroEL GroES;
Heat shock dnaK gene cluster extended;
Protein chaperones
fig|6666666.229899.peg.518 CDS CP012959.1 556847 557974 2 + 1128 Chaperone protein DnaJ GroEL GroES;
Heat shock dnaK gene cluster extended;
Protein chaperones
fig|6666666.229899.peg.519 CDS CP012959.1 558399 558052 -3 - 348 Programmed cell death toxin ChpB - none -
fig|6666666.229899.peg.520 CDS CP012959.1 558656 558399 -2 - 258 hypothetical protein - none -
fig|6666666.229899.peg.521 CDS CP012959.1 559853 558801 -2 - 1053 Outer membrane protein P2 precursor (OMP P2) - none -
fig|6666666.229899.peg.522 CDS CP012959.1 561257 560067 -2 - 1191 Cystathionine beta-lyase (EC 4.4.1.8) Methionine Biosynthesis
fig|6666666.229899.peg.523 CDS CP012959.1 561512 562069 2 + 558 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229899.peg.524 CDS CP012959.1 564040 563342 -1 - 699 NAD-dependent protein deacetylase of SIR2 family Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229899.peg.525 CDS CP012959.1 564703 564056 -1 - 648 Glutaredoxin 2 Glutaredoxins;
Glutathione: Redox cycle
fig|6666666.229899.peg.526 CDS CP012959.1 566295 564820 -3 - 1476 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) Bacterial Cell Division;
CBSS-354.1.peg.2917;
RNA processing and degradation, bacterial
fig|6666666.229899.peg.527 CDS CP012959.1 566435 567955 2 + 1521 Proline/sodium symporter PutP (TC 2.A.21.2.1) @ Propionate/sodium symporter - none -
fig|6666666.229899.peg.528 CDS CP012959.1 567969 568934 3 + 966 tRNA (5-methoxyuridine) 34 synthase tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229899.peg.529 CDS CP012959.1 569022 570320 3 + 1299 Adenylosuccinate synthetase (EC 6.3.4.4) Purine conversions
fig|6666666.229899.peg.530 CDS CP012959.1 570675 570385 -3 - 291 hypothetical protein - none -
fig|6666666.229899.peg.531 CDS CP012959.1 571681 570698 -1 - 984 DnaJ-class molecular chaperone CbpA Protein chaperones
fig|6666666.229899.peg.532 CDS CP012959.1 571969 573501 1 + 1533 GTP-binding protein EngA CBSS-290633.1.peg.1906;
CBSS-498211.3.peg.1415;
Universal GTPases
fig|6666666.229899.peg.533 CDS CP012959.1 574767 573571 -3 - 1197 Sugar efflux transporter SotB - none -
fig|6666666.229899.peg.534 CDS CP012959.1 575971 574769 -1 - 1203 FIG00696476: hypothetical protein - none -
fig|6666666.229899.peg.535 CDS CP012959.1 576556 575972 -1 - 585 Deoxycytidine triphosphate deaminase (EC 3.5.4.13) pyrimidine conversions
fig|6666666.229899.peg.536 CDS CP012959.1 577216 576566 -1 - 651 Uridine kinase (EC 2.7.1.48) [C1] pyrimidine conversions
fig|6666666.229899.peg.537 CDS CP012959.1 577525 578565 1 + 1041 Ferric iron ABC transporter, iron-binding protein Iron acquisition in Streptococcus
fig|6666666.229899.peg.538 CDS CP012959.1 578850 579770 3 + 921 Ferric iron ABC transporter, iron-binding protein Iron acquisition in Streptococcus
fig|6666666.229899.peg.539 CDS CP012959.1 579798 581855 3 + 2058 Ferric iron ABC transporter, permease protein Iron acquisition in Streptococcus
fig|6666666.229899.peg.540 CDS CP012959.1 581871 582917 3 + 1047 Fe(3+) ions import ATP-binding protein fbpC (EC 3.6.3.30) - none -
fig|6666666.229899.peg.541 CDS CP012959.1 583196 585316 2 + 2121 unknown - none -
fig|6666666.229899.peg.542 CDS CP012959.1 587126 586554 -2 - 573 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) Proline Synthesis
fig|6666666.229899.peg.543 CDS CP012959.1 587915 587256 -2 - 660 putative membrane protein - none -
fig|6666666.229899.peg.544 CDS CP012959.1 588112 587996 -1 - 117 hypothetical protein - none -
fig|6666666.229899.peg.545 CDS CP012959.1 588127 588933 1 + 807 Permeases of the drug/metabolite transporter (DMT) superfamily - none -
fig|6666666.229899.peg.546 CDS CP012959.1 590203 589196 -1 - 1008 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) Cluster Ytf and putative sugar transporter;
Glycolysis and Gluconeogenesis;
Putative sugar ABC transporter (ytf cluster)
fig|6666666.229899.peg.547 CDS CP012959.1 590361 591734 3 + 1374 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (EC 6.3.2.-) Peptidoglycan biosynthesis--gjo;
Recycling of Peptidoglycan Amino Acids
fig|6666666.229899.peg.548 CDS CP012959.1 592042 591917 -1 - 126 hypothetical protein - none -
fig|6666666.229899.peg.549 CDS CP012959.1 592112 593230 2 + 1119 Membrane-bound lytic murein transglycosylase A precursor (EC 3.2.1.-) Murein Hydrolases
fig|6666666.229899.peg.550 CDS CP012959.1 593230 594000 1 + 771 CsdL (EC-YgdL) protein of the HesA/MoeB/ThiF family, part of the CsdA-E-L sulfur transfer pathway - none -
fig|6666666.229899.peg.551 CDS CP012959.1 594100 595119 1 + 1020 Zinc ABC transporter, periplasmic-binding protein ZnuA - none -
fig|6666666.229899.peg.552 CDS CP012959.1 595247 596059 2 + 813 Outer membrane lipoprotein e (P4) / NMN 5@1-nucleotidase, extracellular (EC 3.1.3.5) NAD and NADP cofactor biosynthesis global
fig|6666666.229899.peg.553 CDS CP012959.1 597014 596598 -2 - 417 conserved hypothetical protein; possible membrane protein - none -
fig|6666666.229899.peg.554 CDS CP012959.1 597135 597515 3 + 381 Putative oligoketide cyclase/lipid transport protein, similarity with yeast ubiquinone-binding protein YOL008W - none -
fig|6666666.229899.peg.555 CDS CP012959.1 597508 597801 1 + 294 UPF0125 protein yfjF - none -
fig|6666666.229899.peg.556 CDS CP012959.1 597834 599027 3 + 1194 FIG074102: hypothetical protein - none -
fig|6666666.229899.peg.557 CDS CP012959.1 599034 600368 3 + 1335 Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) DNA repair, bacterial;
Purine salvage cluster
fig|6666666.229899.peg.558 CDS CP012959.1 601228 600374 -1 - 855 FIG000506: Predicted P-loop-containing kinase - none -
fig|6666666.229899.peg.559 CDS CP012959.1 601789 601256 -1 - 534 PTS IIA-like nitrogen-regulatory protein PtsN - none -
fig|6666666.229899.peg.560 CDS CP012959.1 602518 601793 -1 - 726 Lipopolysaccharide ABC transporter, ATP-binding protein LptB KDO2-Lipid A biosynthesis;
Lipopolysaccharide assembly
fig|6666666.229899.peg.561 CDS CP012959.1 603042 602524 -3 - 519 LptA, protein essential for LPS transport across the periplasm KDO2-Lipid A biosynthesis;
Lipopolysaccharide assembly
fig|6666666.229899.peg.562 CDS CP012959.1 603598 603023 -1 - 576 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters Lipopolysaccharide assembly
fig|6666666.229899.peg.563 CDS CP012959.1 603711 603595 -3 - 117 hypothetical protein - none -
fig|6666666.229899.peg.564 CDS CP012959.1 603881 604678 2 + 798 Uncharacterized ABC transporter, ATP-binding protein YrbF CBSS-12149.1.peg.3301;
Lipopolysaccharide assembly
fig|6666666.229899.peg.565 CDS CP012959.1 604672 605457 1 + 786 Uncharacterized ABC transporter, permease component YrbE CBSS-12149.1.peg.3301;
Lipopolysaccharide assembly
fig|6666666.229899.peg.566 CDS CP012959.1 605480 605989 2 + 510 Uncharacterized ABC transporter, periplasmic component YrbD CBSS-12149.1.peg.3301;
Lipopolysaccharide assembly
fig|6666666.229899.peg.567 CDS CP012959.1 606018 606659 3 + 642 Uncharacterized ABC transporter, auxiliary component YrbC CBSS-12149.1.peg.3301;
Lipopolysaccharide assembly
fig|6666666.229899.peg.568 CDS CP012959.1 606753 607022 3 + 270 Uncharacterized protein YrbB CBSS-12149.1.peg.3301
fig|6666666.229899.peg.569 CDS CP012959.1 607022 607279 2 + 258 YrbA protein Broadly distributed proteins not in subsystems;
CBSS-12149.1.peg.3301
fig|6666666.229899.peg.570 CDS CP012959.1 607296 608573 3 + 1278 UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7) CBSS-12149.1.peg.3301;
Peptidoglycan Biosynthesis;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229899.peg.571 CDS CP012959.1 608925 608635 -3 - 291 FIG00696346: hypothetical protein - none -
fig|6666666.229899.peg.572 CDS CP012959.1 609129 610559 3 + 1431 Long-chain fatty acid transport protein - none -
fig|6666666.229899.peg.573 CDS CP012959.1 610636 611175 1 + 540 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) DNA repair, bacterial
fig|6666666.229899.peg.574 CDS CP012959.1 611172 611840 3 + 669 DNA mismatch repair endonuclease MutH DNA repair, bacterial
fig|6666666.229899.peg.575 CDS CP012959.1 611905 612630 1 + 726 Integral membrane protein TerC - none -
fig|6666666.229899.peg.576 CDS CP012959.1 614148 612739 -3 - 1410 Glutamine synthetase type I (EC 6.3.1.2) Ammonia assimilation;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Glutamine synthetases;
Peptidoglycan Biosynthesis
fig|6666666.229899.peg.577 CDS CP012959.1 614535 616388 3 + 1854 GTP-binding protein TypA/BipA Universal GTPases
fig|6666666.229899.peg.578 CDS CP012959.1 616498 616385 -1 - 114 hypothetical protein - none -
fig|6666666.229899.peg.579 CDS CP012959.1 616614 619394 3 + 2781 TolA protein Ton and Tol transport systems
fig|6666666.229899.peg.580 CDS CP012959.1 619922 619458 -2 - 465 Thiol peroxidase, Bcp-type (EC 1.11.1.15) CBSS-316057.3.peg.3521;
Thioredoxin-disulfide reductase
fig|6666666.229899.peg.581 CDS CP012959.1 620080 620973 1 + 894 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229899.peg.582 CDS CP012959.1 621086 622090 2 + 1005 Outer membrane protein NlpB, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and YfgL); Lipoprotein-34 precursor Lipopolysaccharide assembly
fig|6666666.229899.peg.583 CDS CP012959.1 622225 623736 1 + 1512 L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1) / Osmotic adaptation Choline and Betaine Uptake and Betaine Biosynthesis
fig|6666666.229899.peg.584 CDS CP012959.1 624051 624887 3 + 837 L-proline glycine betaine ABC transport system permease protein ProV (TC 3.A.1.12.1) Choline and Betaine Uptake and Betaine Biosynthesis
fig|6666666.229899.peg.585 CDS CP012959.1 625635 624940 -3 - 696 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC A Hypothetical Protein Related to Proline Metabolism;
CBSS-630.2.peg.3360
fig|6666666.229899.peg.586 CDS CP012959.1 627016 625628 -1 - 1389 Nicotinamide phosphoribosyltransferase (EC 2.4.2.12) NAD and NADP cofactor biosynthesis global
fig|6666666.229899.peg.587 CDS CP012959.1 627155 627286 2 + 132 hypothetical protein - none -
fig|6666666.229899.peg.588 CDS CP012959.1 627375 629822 3 + 2448 Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) CBSS-216591.1.peg.168;
Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch;
Methionine Biosynthesis;
Threonine and Homoserine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229899.peg.589 CDS CP012959.1 629835 630779 3 + 945 Homoserine kinase (EC 2.7.1.39) CBSS-269482.1.peg.1294;
Methionine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229899.peg.590 CDS CP012959.1 630807 631247 3 + 441 hypothetical protein - none -
fig|6666666.229899.peg.591 CDS CP012959.1 631303 632577 1 + 1275 Threonine synthase (EC 4.2.3.1) Threonine and Homoserine Biosynthesis
fig|6666666.229899.peg.592 CDS CP012959.1 632636 633355 2 + 720 4@1-phosphopantetheinyl transferase (EC 2.7.8.-) Fatty Acid Biosynthesis FASII
fig|6666666.229899.peg.593 CDS CP012959.1 633451 634704 1 + 1254 HflK protein Hfl operon;
Scaffold proteins for [4Fe-4S] cluster assembly (MRP family)
fig|6666666.229899.peg.594 CDS CP012959.1 634704 635591 3 + 888 HflC protein Hfl operon;
Scaffold proteins for [4Fe-4S] cluster assembly (MRP family)
fig|6666666.229899.peg.595 CDS CP012959.1 635621 635746 2 + 126 hypothetical protein - none -
fig|6666666.229899.peg.596 CDS CP012959.1 637067 635769 -2 - 1299 Cell division trigger factor (EC 5.2.1.8) Bacterial Cell Division
fig|6666666.229899.peg.597 CDS CP012959.1 638124 637231 -3 - 894 Tyrosine recombinase XerD - none -
fig|6666666.229899.peg.598 CDS CP012959.1 638567 638127 -2 - 441 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) A Hypothetical Protein Related to Proline Metabolism;
CBSS-630.2.peg.3360;
Proline Synthesis
fig|6666666.229899.peg.599 CDS CP012959.1 638630 639535 2 + 906 DNA recombination-dependent growth factor C DNA repair, bacterial
fig|6666666.229899.peg.600 CDS CP012959.1 640000 639626 -1 - 375 opacity associated protein - none -
fig|6666666.229899.peg.601 CDS CP012959.1 641384 640062 -2 - 1323 Cell envelope opacity-associated protein A - none -
fig|6666666.229899.peg.602 CDS CP012959.1 642587 641556 -2 - 1032 Lysyl-lysine 2,3-aminomutase Translation elongation factor P lysylation
fig|6666666.229899.peg.603 CDS CP012959.1 642652 643173 1 + 522 Translation elongation factor P Translation elongation factor P lysylation;
Translation elongation factors bacterial
fig|6666666.229899.peg.604 CDS CP012959.1 643504 644880 1 + 1377 Tryptophanase (EC 4.1.99.1) - none -
fig|6666666.229899.peg.605 CDS CP012959.1 645042 646256 3 + 1215 Tyrosine-specific transport protein - none -
fig|6666666.229899.peg.606 CDS CP012959.1 646999 646322 -1 - 678 YheO-like PAS domain - none -
fig|6666666.229899.peg.607 CDS CP012959.1 647568 647062 -3 - 507 Arabinose efflux permease - none -
fig|6666666.229899.peg.608 CDS CP012959.1 648292 647561 -1 - 732 UDP-2,3-diacylglucosamine diphosphatase (EC 3.6.1.54) KDO2-Lipid A biosynthesis;
Llipid A biosynthesis cluster
fig|6666666.229899.peg.609 CDS CP012959.1 648403 649146 1 + 744 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229899.peg.610 CDS CP012959.1 649154 650566 2 + 1413 Putative cell division protein precursor - none -
fig|6666666.229899.peg.611 CDS CP012959.1 651502 650639 -1 - 864 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229899.peg.612 CDS CP012959.1 652384 651644 -1 - 741 Pyruvate formate-lyase activating enzyme (EC 1.97.1.4) Fermentations: Mixed acid
fig|6666666.229899.peg.613 CDS CP012959.1 654842 652530 -2 - 2313 Pyruvate formate-lyase (EC 2.3.1.54) Butanol Biosynthesis;
Fermentations: Mixed acid
fig|6666666.229899.peg.614 CDS CP012959.1 655762 654941 -1 - 822 Formate efflux transporter (TC 2.A.44 family) Fermentations: Mixed acid
fig|6666666.229899.peg.615 CDS CP012959.1 656105 656455 2 + 351 Bis(5@1-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17) pyrimidine conversions
fig|6666666.229899.peg.616 CDS CP012959.1 656456 656809 2 + 354 Predicted periplasmic lipoprotein - none -
fig|6666666.229899.peg.617 CDS CP012959.1 656811 657857 3 + 1047 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) Murein Hydrolases;
Recycling of Peptidoglycan Amino Sugars
fig|6666666.229899.peg.618 CDS CP012959.1 657859 658791 1 + 933 23S rRNA (Uracil-5-) -methyltransferase rumB (EC 2.1.1.-) RNA methylation
fig|6666666.229899.peg.619 CDS CP012959.1 658875 659036 3 + 162 23S rRNA (Uracil-5-) -methyltransferase rumB (EC 2.1.1.-) RNA methylation
fig|6666666.229899.peg.620 CDS CP012959.1 660101 659136 -2 - 966 6-phosphofructokinase (EC 2.7.1.11) Glycolysis and Gluconeogenesis
fig|6666666.229899.peg.621 CDS CP012959.1 661083 660163 -3 - 921 Cobalt-zinc-cadmium resistance protein Cobalt-zinc-cadmium resistance
fig|6666666.229899.peg.622 CDS CP012959.1 661649 661083 -2 - 567 FIG00696199: hypothetical protein - none -
fig|6666666.229899.peg.623 CDS CP012959.1 662430 661651 -3 - 780 UPF0246 protein YaaA - none -
fig|6666666.229899.peg.624 CDS CP012959.1 663120 662452 -3 - 669 Uracil-DNA glycosylase, family 1 DNA Repair Base Excision;
Uracil-DNA glycosylase
fig|6666666.229899.peg.625 CDS CP012959.1 663406 663789 1 + 384 Pyruvate formate-lyase (EC 2.3.1.54) Butanol Biosynthesis;
Fermentations: Mixed acid
fig|6666666.229899.peg.626 CDS CP012959.1 663953 665749 2 + 1797 Translation elongation factor LepA Heat shock dnaK gene cluster extended;
Translation elongation factors bacterial;
Universal GTPases
fig|6666666.229899.peg.627 CDS CP012959.1 665760 666782 3 + 1023 Signal peptidase I (EC 3.4.21.89) CBSS-176299.4.peg.1292;
Signal peptidase
fig|6666666.229899.peg.628 CDS CP012959.1 666789 667469 3 + 681 Ribonuclease III (EC 3.1.26.3) CBSS-176299.4.peg.1292;
RNA processing and degradation, bacterial
fig|6666666.229899.peg.629 CDS CP012959.1 667466 668374 2 + 909 GTP-binding protein Era Bacterial Cell Division;
CBSS-176299.4.peg.1292;
Glycyl-tRNA synthetase containing cluster;
Universal GTPases;
tRNA modification Archaea
fig|6666666.229899.peg.630 CDS CP012959.1 669833 668478 -2 - 1356 GTPase and tRNA-U34 5-formylation enzyme TrmE Cell Division Subsystem including YidCD;
RNA modification and chromosome partitioning cluster;
RNA modification cluster;
Universal GTPases;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229899.peg.631 CDS CP012959.1 671572 669962 -1 - 1611 Inner membrane protein translocase component YidC, long form CTP synthase (EC 6.3.4.2) cluster;
Cell Division Subsystem including YidCD;
RNA modification cluster
fig|6666666.229899.peg.632 CDS CP012959.1 671856 671593 -3 - 264 Protein YidD Cell Division Subsystem including YidCD;
RNA modification cluster
fig|6666666.229899.peg.633 CDS CP012959.1 672146 671811 -2 - 336 Ribonuclease P protein component (EC 3.1.26.5) Cell Division Subsystem including YidCD;
RNA modification cluster;
tRNA processing
fig|6666666.229899.peg.634 CDS CP012959.1 672326 672192 -2 - 135 LSU ribosomal protein L34p Cell Division Subsystem including YidCD;
RNA modification cluster;
Ribosome LSU bacterial
fig|6666666.229899.peg.635 CDS CP012959.1 672658 672521 -1 - 138 hypothetical protein - none -
fig|6666666.229899.peg.636 CDS CP012959.1 672744 674105 3 + 1362 Chromosomal replication initiator protein DnaA Cell Division Subsystem including YidCD;
DNA replication cluster 1
fig|6666666.229899.peg.637 CDS CP012959.1 674116 675216 1 + 1101 DNA polymerase III beta subunit (EC 2.7.7.7) Cell Division Subsystem including YidCD;
DNA replication cluster 1
fig|6666666.229899.peg.638 CDS CP012959.1 675220 676296 1 + 1077 DNA recombination and repair protein RecF Cell Division Subsystem including YidCD;
DNA repair, bacterial RecFOR pathway;
DNA replication cluster 1
fig|6666666.229899.peg.639 CDS CP012959.1 677098 676343 -1 - 756 Ubiquinone/menaquinone biosynthesis methyltransferase UbiE (EC 2.1.1.-) Menaquinone and Phylloquinone Biosynthesis;
Ubiquinone Biosynthesis
fig|6666666.229899.peg.640 CDS CP012959.1 677286 677861 3 + 576 Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1) Oxidative stress;
Protection from Reactive Oxygen Species
fig|6666666.229899.peg.641 CDS CP012959.1 679215 678019 -3 - 1197 NAD(FAD)-utilizing dehydrogenases - none -
fig|6666666.229899.peg.642 CDS CP012959.1 680261 679212 -2 - 1050 Cytochrome c-type heme lyase subunit nrfF, nitrite reductase complex assembly Nitrate and nitrite ammonification
fig|6666666.229899.peg.643 CDS CP012959.1 680788 680258 -1 - 531 Putative thiol:disulfide oxidoreductase, nitrite reductase complex assembly Nitrate and nitrite ammonification
fig|6666666.229899.peg.644 CDS CP012959.1 682691 680781 -2 - 1911 Cytochrome c-type heme lyase subunit nrfE, nitrite reductase complex assembly Nitrate and nitrite ammonification
fig|6666666.229899.peg.645 CDS CP012959.1 682830 683048 3 + 219 hypothetical protein - none -
fig|6666666.229899.peg.646 CDS CP012959.1 684245 683280 -2 - 966 NrfD protein Nitrate and nitrite ammonification
fig|6666666.229899.peg.647 CDS CP012959.1 684865 684242 -1 - 624 NrfC protein Nitrate and nitrite ammonification
fig|6666666.229899.peg.648 CDS CP012959.1 685581 684916 -3 - 666 Cytochrome c-type protein NrfB precursor Nitrate and nitrite ammonification
fig|6666666.229899.peg.649 CDS CP012959.1 687178 685655 -1 - 1524 Cytochrome c552 precursor (EC 1.7.2.2) Nitrate and nitrite ammonification;
Soluble cytochromes and functionally related electron carriers
fig|6666666.229899.peg.650 CDS CP012959.1 688045 687755 -1 - 291 hypothetical protein - none -
fig|6666666.229899.peg.651 CDS CP012959.1 688689 688063 -3 - 627 Parvulin-like peptidyl-prolyl isomerase - none -
fig|6666666.229899.peg.652 CDS CP012959.1 689744 688821 -2 - 924 Cytochrome c heme lyase subunit CcmH Biogenesis of c-type cytochromes;
Copper homeostasis
fig|6666666.229899.peg.653 CDS CP012959.1 690295 689744 -1 - 552 Cytochrome c heme lyase subunit CcmL Biogenesis of c-type cytochromes
fig|6666666.229899.peg.654 CDS CP012959.1 690840 690295 -3 - 546 Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase Biogenesis of c-type cytochromes;
Periplasmic disulfide interchange
fig|6666666.229899.peg.655 CDS CP012959.1 692827 690869 -1 - 1959 Cytochrome c heme lyase subunit CcmF Biogenesis of c-type cytochromes;
Copper homeostasis
fig|6666666.229899.peg.656 CDS CP012959.1 693345 692827 -3 - 519 Cytochrome c-type biogenesis protein CcmE, heme chaperone Biogenesis of c-type cytochromes
fig|6666666.229899.peg.657 CDS CP012959.1 693515 693342 -2 - 174 Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE Biogenesis of c-type cytochromes
fig|6666666.229899.peg.658 CDS CP012959.1 694303 693566 -1 - 738 Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE Biogenesis of c-type cytochromes
fig|6666666.229899.peg.659 CDS CP012959.1 694979 694314 -2 - 666 ABC transporter involved in cytochrome c biogenesis, CcmB subunit Biogenesis of c-type cytochromes
fig|6666666.229899.peg.660 CDS CP012959.1 695619 694984 -3 - 636 ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA Biogenesis of c-type cytochromes
fig|6666666.229899.peg.661 CDS CP012959.1 696984 695791 -3 - 1194 Bicyclomycin resistance protein - none -
fig|6666666.229899.peg.662 CDS CP012959.1 697690 696989 -1 - 702 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses
fig|6666666.229899.peg.663 CDS CP012959.1 697906 699108 1 + 1203 hypothetical protein - none -
fig|6666666.229899.peg.664 CDS CP012959.1 699150 699485 3 + 336 hypothetical protein - none -
fig|6666666.229899.peg.665 CDS CP012959.1 699582 702101 3 + 2520 hypothetical protein - none -
fig|6666666.229899.peg.666 CDS CP012959.1 702114 703049 3 + 936 hypothetical protein - none -
fig|6666666.229899.peg.667 CDS CP012959.1 703370 703744 2 + 375 hypothetical protein - none -
fig|6666666.229899.peg.668 CDS CP012959.1 703741 704043 1 + 303 Mobile element protein - none -
fig|6666666.229899.peg.669 CDS CP012959.1 704037 704501 3 + 465 Mobile element protein - none -
fig|6666666.229899.peg.670 CDS CP012959.1 705795 704641 -3 - 1155 S-adenosylmethionine synthetase (EC 2.5.1.6) Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229899.peg.671 CDS CP012959.1 706272 706003 -3 - 270 SSU ribosomal protein S15p (S13e) Ribosome SSU bacterial
fig|6666666.229899.peg.672 CDS CP012959.1 707117 706368 -2 - 750 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase (EC 4.2.99.20) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229899.peg.673 CDS CP012959.1 708876 707170 -3 - 1707 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase (EC 2.2.1.9) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229899.peg.674 CDS CP012959.1 710171 708867 -2 - 1305 Menaquinone-specific isochorismate synthase (EC 5.4.4.2) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229899.peg.675 CDS CP012959.1 710288 711502 2 + 1215 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229899.peg.676 CDS CP012959.1 712354 711623 -1 - 732 Transcriptional regulator for fatty acid degradation FadR, GntR family - none -
fig|6666666.229899.peg.677 CDS CP012959.1 712549 714093 1 + 1545 Na+/H+ antiporter NhaB - none -
fig|6666666.229899.peg.678 CDS CP012959.1 714117 714656 3 + 540 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation Biogenesis of c-type cytochromes;
Periplasmic disulfide interchange
fig|6666666.229899.peg.679 CDS CP012959.1 714845 714699 -2 - 147 hypothetical protein - none -
fig|6666666.229899.peg.680 CDS CP012959.1 716286 714856 -3 - 1431 Transglycosylase, Slt family - none -
fig|6666666.229899.peg.681 CDS CP012959.1 716660 716307 -2 - 354 Dihydroneopterin aldolase (EC 4.1.2.25) Folate Biosynthesis;
Folate biosynthesis cluster
fig|6666666.229899.peg.682 CDS CP012959.1 716757 717353 3 + 597 Acyl-phosphate:glycerol-3-phosphate O-acyltransferase PlsY Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229899.peg.683 CDS CP012959.1 717886 717443 -1 - 444 FIG00904084: hypothetical protein - none -
fig|6666666.229899.peg.684 CDS CP012959.1 717981 718808 3 + 828 YpfJ protein, zinc metalloprotease superfamily Broadly distributed proteins not in subsystems
fig|6666666.229899.peg.685 CDS CP012959.1 719801 719010 -2 - 792 putative lipoprotein - none -
fig|6666666.229899.peg.686 CDS CP012959.1 720856 720212 -1 - 645 Manganese superoxide dismutase (EC 1.15.1.1) Oxidative stress;
Protection from Reactive Oxygen Species
fig|6666666.229899.peg.687 CDS CP012959.1 723264 721000 -3 - 2265 NADP-dependent malic enzyme (EC 1.1.1.40) Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229899.peg.688 CDS CP012959.1 723412 723257 -1 - 156 hypothetical protein - none -
fig|6666666.229899.peg.689 CDS CP012959.1 723751 723885 1 + 135 hypothetical protein - none -
fig|6666666.229899.peg.690 CDS CP012959.1 724856 723873 -2 - 984 hypothetical protein - none -
fig|6666666.229899.peg.691 CDS CP012959.1 725925 724864 -3 - 1062 hypothetical protein - none -
fig|6666666.229899.peg.692 CDS CP012959.1 726677 725922 -2 - 756 hypothetical protein - none -
fig|6666666.229899.peg.693 CDS CP012959.1 727956 726679 -3 - 1278 hypothetical protein - none -
fig|6666666.229899.peg.694 CDS CP012959.1 729334 727946 -1 - 1389 hypothetical protein - none -
fig|6666666.229899.peg.695 CDS CP012959.1 729403 729633 1 + 231 hypothetical protein - none -
fig|6666666.229899.peg.696 CDS CP012959.1 729644 730018 2 + 375 hypothetical protein - none -
fig|6666666.229899.peg.697 CDS CP012959.1 730015 730317 1 + 303 Mobile element protein - none -
fig|6666666.229899.peg.698 CDS CP012959.1 730311 730775 3 + 465 Mobile element protein - none -
fig|6666666.229899.peg.699 CDS CP012959.1 730859 731359 2 + 501 Protein sprT - none -
fig|6666666.229899.peg.700 CDS CP012959.1 731516 732757 2 + 1242 Serine transporter Glycine and Serine Utilization;
Pyruvate Alanine Serine Interconversions
fig|6666666.229899.peg.701 CDS CP012959.1 732850 734214 1 + 1365 L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17) Glycine and Serine Utilization;
Glycine and Serine Utilization;
Pyruvate Alanine Serine Interconversions;
Pyruvate Alanine Serine Interconversions
fig|6666666.229899.peg.702 CDS CP012959.1 735365 734316 -2 - 1050 L-asparaginase (EC 3.5.1.1) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229899.peg.703 CDS CP012959.1 735533 735420 -2 - 114 hypothetical protein - none -
fig|6666666.229899.peg.704 CDS CP012959.1 735660 736799 3 + 1140 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) CBSS-498211.3.peg.1415;
Conserved gene cluster associated with Met-tRNA formyltransferase;
RNA methylation
fig|6666666.229899.peg.705 CDS CP012959.1 736821 737372 3 + 552 Type IV pilus biogenesis protein PilF CBSS-498211.3.peg.1415
fig|6666666.229899.peg.706 CDS CP012959.1 737515 738570 1 + 1056 FIG021952: putative membrane protein CBSS-498211.3.peg.1415
fig|6666666.229899.peg.707 CDS CP012959.1 738582 739685 3 + 1104 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (EC 1.17.7.1) CBSS-498211.3.peg.1415;
CBSS-83331.1.peg.3039;
Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.229899.peg.708 CDS CP012959.1 739707 740984 3 + 1278 Histidyl-tRNA synthetase (EC 6.1.1.21) CBSS-498211.3.peg.1415;
tRNA aminoacylation, His
fig|6666666.229899.peg.709 CDS CP012959.1 740995 741609 1 + 615 Mlr7403 protein CBSS-290633.1.peg.1906;
CBSS-498211.3.peg.1415
fig|6666666.229899.peg.710 CDS CP012959.1 741662 742114 2 + 453 Putative protein-S-isoprenylcysteine methyltransferase - none -
fig|6666666.229899.peg.711 CDS CP012959.1 742824 742120 -3 - 705 Chromosomal replication initiator protein DnaA Cell Division Subsystem including YidCD;
DNA replication cluster 1
fig|6666666.229899.peg.712 CDS CP012959.1 742810 742947 1 + 138 hypothetical protein - none -
fig|6666666.229899.peg.713 CDS CP012959.1 744197 742944 -2 - 1254 Uracil permease De Novo Pyrimidine Synthesis
fig|6666666.229899.peg.714 CDS CP012959.1 744947 744321 -2 - 627 Uracil phosphoribosyltransferase (EC 2.4.2.9) De Novo Pyrimidine Synthesis;
pyrimidine conversions
fig|6666666.229899.peg.715 CDS CP012959.1 746929 745082 -1 - 1848 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase
fig|6666666.229899.peg.716 CDS CP012959.1 749473 747056 -1 - 2418 ATP-dependent protease La (EC 3.4.21.53) Type I Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229899.peg.717 CDS CP012959.1 749910 751664 3 + 1755 Putative sulfate permease - none -
fig|6666666.229899.peg.718 CDS CP012959.1 752580 751690 -3 - 891 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229899.peg.719 CDS CP012959.1 753572 752637 -2 - 936 hypothetical protein - none -
fig|6666666.229899.peg.720 CDS CP012959.1 754782 753598 -3 - 1185 Mannonate dehydratase (EC 4.2.1.8) D-Galacturonate and D-Glucuronate Utilization
fig|6666666.229899.peg.721 CDS CP012959.1 755557 754802 -1 - 756 Hexuronate utilization operon transcriptional repressor ExuR D-Galacturonate and D-Glucuronate Utilization
fig|6666666.229899.peg.722 CDS CP012959.1 757947 755572 -3 - 2376 Alpha-glucosidase (EC 3.2.1.20) D-Galacturonate and D-Glucuronate Utilization;
Maltose and Maltodextrin Utilization
fig|6666666.229899.peg.723 CDS CP012959.1 758576 757971 -2 - 606 TRAP-type C4-dicarboxylate transport system, large permease component TRAP Transporter collection
fig|6666666.229899.peg.724 CDS CP012959.1 759271 758588 -1 - 684 TRAP-type C4-dicarboxylate transport system, large permease component TRAP Transporter collection
fig|6666666.229899.peg.725 CDS CP012959.1 759984 760976 3 + 993 TRAP-type C4-dicarboxylate transport system, periplasmic component TRAP Transporter collection
fig|6666666.229899.peg.726 CDS CP012959.1 761031 761975 3 + 945 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) D-Galacturonate and D-Glucuronate Utilization;
D-gluconate and ketogluconates metabolism;
Entner-Doudoroff Pathway
fig|6666666.229899.peg.727 CDS CP012959.1 761987 762832 2 + 846 D-mannonate oxidoreductase (EC 1.1.1.57) D-Galacturonate and D-Glucuronate Utilization
fig|6666666.229899.peg.728 CDS CP012959.1 762844 764247 1 + 1404 Uronate isomerase (EC 5.3.1.12) D-Galacturonate and D-Glucuronate Utilization
fig|6666666.229899.peg.729 CDS CP012959.1 764256 764897 3 + 642 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) D-Galacturonate and D-Glucuronate Utilization;
Entner-Doudoroff Pathway
fig|6666666.229899.peg.730 CDS CP012959.1 766030 764984 -1 - 1047 iron chelatin ABC transporter periplasmic-binding protein - none -
fig|6666666.229899.peg.731 CDS CP012959.1 767573 766341 -2 - 1233 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) Glycine and Serine Utilization;
Pyridoxin (Vitamin B6) Biosynthesis;
Serine Biosynthesis
fig|6666666.229899.peg.732 CDS CP012959.1 768249 767593 -3 - 657 Ribose 5-phosphate isomerase A (EC 5.3.1.6) D-ribose utilization;
Pentose phosphate pathway
fig|6666666.229899.peg.733 CDS CP012959.1 769517 768348 -2 - 1170 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB CBSS-630.2.peg.3360;
Heat shock dnaK gene cluster extended;
Heme and Siroheme Biosynthesis;
Queuosine-Archaeosine Biosynthesis
fig|6666666.229899.peg.734 CDS CP012959.1 769840 769517 -1 - 324 PlcB, ORFX, ORFP, ORFB, ORFA, ldh gene - none -
fig|6666666.229899.peg.735 CDS CP012959.1 770559 769879 -3 - 681 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) Heat shock dnaK gene cluster extended;
Housecleaning nucleoside triphosphate pyrophosphatases
fig|6666666.229899.peg.736 CDS CP012959.1 770914 770585 -1 - 330 DNA uptake protein and related DNA-binding proteins - none -
fig|6666666.229899.peg.737 CDS CP012959.1 770916 771071 3 + 156 hypothetical protein - none -
fig|6666666.229899.peg.738 CDS CP012959.1 772451 771507 -2 - 945 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.229899.peg.739 CDS CP012959.1 772945 772451 -1 - 495 Lipoprotein signal peptidase (EC 3.4.23.36) Lipoprotein Biosynthesis;
Signal peptidase
fig|6666666.229899.peg.740 CDS CP012959.1 775799 773025 -2 - 2775 Isoleucyl-tRNA synthetase (EC 6.1.1.5) tRNA aminoacylation, Ile
fig|6666666.229899.peg.741 CDS CP012959.1 776133 775885 -3 - 249 FIG01055344: hypothetical protein - none -
fig|6666666.229899.peg.742 CDS CP012959.1 776359 776117 -1 - 243 putative ORF-4 - none -
fig|6666666.229899.peg.743 CDS CP012959.1 777291 776359 -3 - 933 Riboflavin kinase (EC 2.7.1.26) / FMN adenylyltransferase (EC 2.7.7.2) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin, FMN and FAD metabolism in plants;
riboflavin to FAD;
riboflavin to FAD
fig|6666666.229899.peg.744 CDS CP012959.1 778946 777369 -2 - 1578 Proposed peptidoglycan lipid II flippase MurJ Peptidoglycan lipid II flippase
fig|6666666.229899.peg.745 CDS CP012959.1 779214 779477 3 + 264 SSU ribosomal protein S20p Ribosome SSU bacterial
fig|6666666.229899.peg.746 CDS CP012959.1 780264 779587 -3 - 678 Lipoate-protein ligase A Lipoic acid metabolism
fig|6666666.229899.peg.747 CDS CP012959.1 780340 781284 1 + 945 Phosphoserine phosphatase (EC 3.1.3.3) Glycine and Serine Utilization;
Serine Biosynthesis;
Serine Biosynthesis
fig|6666666.229899.peg.748 CDS CP012959.1 781295 781786 2 + 492 FIG001943: hypothetical protein YajQ Broadly distributed proteins not in subsystems
fig|6666666.229899.peg.749 CDS CP012959.1 781915 782499 1 + 585 Peptidyl-tRNA hydrolase (EC 3.1.1.29) Cell division-ribosomal stress proteins cluster;
Sporulation-associated proteins with broader functions;
Transcription repair cluster;
Translation termination factors bacterial
fig|6666666.229899.peg.750 CDS CP012959.1 782688 783779 3 + 1092 GTP-binding and nucleic acid-binding protein YchF Universal GTPases
fig|6666666.229899.peg.751 CDS CP012959.1 784115 784696 2 + 582 Hypothetical protein VC0266 (sugar utilization related?) VC0266
fig|6666666.229899.peg.752 CDS CP012959.1 784768 784914 1 + 147 hypothetical protein - none -
fig|6666666.229899.peg.753 CDS CP012959.1 785056 785169 1 + 114 hypothetical protein - none -
fig|6666666.229899.peg.754 CDS CP012959.1 786081 785134 -3 - 948 Cysteine synthase (EC 2.5.1.47) Cysteine Biosynthesis;
Methionine Biosynthesis
fig|6666666.229899.peg.755 CDS CP012959.1 787019 786195 -2 - 825 Sulfate transporter, CysZ-type Cysteine Biosynthesis
fig|6666666.229899.peg.756 CDS CP012959.1 787064 788197 2 + 1134 Cell division protein ZipA Bacterial Cytoskeleton
fig|6666666.229899.peg.757 CDS CP012959.1 788307 788194 -3 - 114 hypothetical protein - none -
fig|6666666.229899.peg.758 CDS CP012959.1 788301 790316 3 + 2016 DNA ligase (EC 6.5.1.2) DNA Repair Base Excision
fig|6666666.229899.peg.759 CDS CP012959.1 790963 790385 -1 - 579 Thymidine kinase (EC 2.7.1.21) pyrimidine conversions
fig|6666666.229899.peg.760 CDS CP012959.1 791199 790966 -3 - 234 unknown - none -
fig|6666666.229899.peg.761 CDS CP012959.1 792292 791264 -1 - 1029 TsaD/Kae1/Qri7 protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Macromolecular synthesis operon;
YgjD and YeaZ;
YrdC-YciO-Sua5 protein family
fig|6666666.229899.peg.762 CDS CP012959.1 792482 792315 -2 - 168 hypothetical protein - none -
fig|6666666.229899.peg.763 CDS CP012959.1 792517 792732 1 + 216 SSU ribosomal protein S21p Macromolecular synthesis operon;
Ribosome SSU bacterial
fig|6666666.229899.peg.764 CDS CP012959.1 792854 794611 2 + 1758 DNA primase (EC 2.7.7.-) CBSS-349161.4.peg.2417;
Macromolecular synthesis operon
fig|6666666.229899.peg.765 CDS CP012959.1 794687 796537 2 + 1851 RNA polymerase sigma factor RpoD CBSS-349161.4.peg.2417;
Macromolecular synthesis operon;
Transcription initiation, bacterial sigma factors
fig|6666666.229899.peg.766 CDS CP012959.1 796932 797204 3 + 273 Phage integrase - none -
fig|6666666.229899.peg.767 CDS CP012959.1 797471 797605 2 + 135 hypothetical protein - none -
fig|6666666.229899.peg.768 CDS CP012959.1 797998 798138 1 + 141 Mobile element protein - none -
fig|6666666.229899.peg.769 CDS CP012959.1 798221 798361 2 + 141 Mobile element protein - none -
fig|6666666.229899.peg.770 CDS CP012959.1 798398 798646 2 + 249 Mobile element protein - none -
fig|6666666.229899.peg.771 CDS CP012959.1 799440 799183 -3 - 258 SSU ribosomal protein S17p (S11e) Ribosome SSU bacterial
fig|6666666.229899.peg.772 CDS CP012959.1 799631 799440 -2 - 192 LSU ribosomal protein L29p (L35e) Ribosome LSU bacterial
fig|6666666.229899.peg.773 CDS CP012959.1 800041 799631 -1 - 411 LSU ribosomal protein L16p (L10e) Ribosome LSU bacterial
fig|6666666.229899.peg.774 CDS CP012959.1 800762 800055 -2 - 708 SSU ribosomal protein S3p (S3e) Ribosome SSU bacterial
fig|6666666.229899.peg.775 CDS CP012959.1 801111 800779 -3 - 333 LSU ribosomal protein L22p (L17e) Ribosome LSU bacterial
fig|6666666.229899.peg.776 CDS CP012959.1 801268 801122 -1 - 147 SSU ribosomal protein S19p (S15e) Ribosome SSU bacterial
fig|6666666.229899.peg.777 CDS CP012959.1 802244 801423 -2 - 822 LSU ribosomal protein L2p (L8e) Ribosome LSU bacterial
fig|6666666.229899.peg.778 CDS CP012959.1 802567 802265 -1 - 303 LSU ribosomal protein L23p (L23Ae) Ribosome LSU bacterial
fig|6666666.229899.peg.779 CDS CP012959.1 803166 802564 -3 - 603 LSU ribosomal protein L4p (L1e) Ribosome LSU bacterial
fig|6666666.229899.peg.780 CDS CP012959.1 803808 803182 -3 - 627 LSU ribosomal protein L3p (L3e) Ribosome LSU bacterial
fig|6666666.229899.peg.781 CDS CP012959.1 804136 803825 -1 - 312 SSU ribosomal protein S10p (S20e) Ribosome SSU bacterial
fig|6666666.229899.peg.782 CDS CP012959.1 805282 804386 -1 - 897 Transcriptional regulators, LysR family - none -
fig|6666666.229899.peg.783 CDS CP012959.1 805556 806209 2 + 654 Acetyl-CoA:acetoacetyl-CoA transferase, alpha subunit (EC 2.8.3.8) - none -
fig|6666666.229899.peg.784 CDS CP012959.1 806221 806886 1 + 666 Acetyl-CoA:acetoacetyl-CoA transferase, beta subunit (EC 2.8.3.8) - none -
fig|6666666.229899.peg.785 CDS CP012959.1 806889 808232 3 + 1344 Short chain fatty acids transporter Polyhydroxybutyrate metabolism
fig|6666666.229899.peg.786 CDS CP012959.1 808250 809431 2 + 1182 Acetyl-CoA acetyltransferase (EC 2.3.1.9) Butanol Biosynthesis;
Isoprenoid Biosynthesis;
Polyhydroxybutyrate metabolism;
Serine-glyoxylate cycle
fig|6666666.229899.peg.787 CDS CP012959.1 809996 809529 -2 - 468 Transcriptional regulator, AsnC family - none -
fig|6666666.229899.peg.788 CDS CP012959.1 811616 810087 -2 - 1530 Arginine/ornithine antiporter ArcD Arginine Deiminase Pathway;
Arginine and Ornithine Degradation;
Polyamine Metabolism
fig|6666666.229899.peg.789 CDS CP012959.1 812665 811733 -1 - 933 Carbamate kinase (EC 2.7.2.2) Arginine Deiminase Pathway;
Arginine and Ornithine Degradation;
Polyamine Metabolism
fig|6666666.229899.peg.790 CDS CP012959.1 813679 812675 -1 - 1005 Ornithine carbamoyltransferase (EC 2.1.3.3) Arginine Deiminase Pathway;
Arginine and Ornithine Degradation
fig|6666666.229899.peg.791 CDS CP012959.1 813922 815313 1 + 1392 Chloride channel protein - none -
fig|6666666.229899.peg.792 CDS CP012959.1 815316 816299 3 + 984 tRNA dihydrouridine synthase A - none -
fig|6666666.229899.peg.793 CDS CP012959.1 817347 816355 -3 - 993 Aspartate--ammonia ligase (EC 6.3.1.1) CBSS-262728.1.peg.1737;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229899.peg.794 CDS CP012959.1 817513 817965 1 + 453 Regulatory protein AsnC CBSS-262728.1.peg.1737
fig|6666666.229899.peg.795 CDS CP012959.1 818000 818758 2 + 759 Uridine phosphorylase (EC 2.4.2.3) pyrimidine conversions
fig|6666666.229899.peg.796 CDS CP012959.1 819954 818893 -3 - 1062 Putative permease PerM (= YfgO) - none -
fig|6666666.229899.peg.797 CDS CP012959.1 820028 820378 2 + 351 Arsenate reductase (EC 1.20.4.1) Anaerobic respiratory reductases;
Arsenic resistance;
Transcription repair cluster
fig|6666666.229899.peg.798 CDS CP012959.1 820569 820444 -3 - 126 hypothetical protein - none -
fig|6666666.229899.peg.799 CDS CP012959.1 820924 820562 -1 - 363 FIG00696564: hypothetical protein - none -
fig|6666666.229899.peg.800 CDS CP012959.1 821159 820875 -2 - 285 hypothetical protein - none -
fig|6666666.229899.peg.801 CDS CP012959.1 821370 822701 3 + 1332 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase Methylthiotransferases;
Ribosomal protein S12p Asp methylthiotransferase
fig|6666666.229899.peg.802 CDS CP012959.1 822736 823230 1 + 495 Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48) LMPTP YfkJ cluster;
Protein deglycation
fig|6666666.229899.peg.803 CDS CP012959.1 824243 823647 -2 - 597 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) G3E family of P-loop GTPases (metallocenter biosynthesis);
Peptidyl-prolyl cis-trans isomerase;
Potassium homeostasis
fig|6666666.229899.peg.804 CDS CP012959.1 825057 824338 -3 - 720 probable periplasmic protein NMA1059 - none -
fig|6666666.229899.peg.805 CDS CP012959.1 825542 825108 -2 - 435 Ribonuclease E inhibitor RraB RNA processing and degradation, bacterial
fig|6666666.229899.peg.806 CDS CP012959.1 826032 825637 -3 - 396 Large-conductance mechanosensitive channel Potassium homeostasis
fig|6666666.229899.peg.807 CDS CP012959.1 827518 826142 -1 - 1377 Trk system potassium uptake protein TrkA Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Hyperosmotic potassium uptake;
Potassium homeostasis;
Potassium homeostasis
fig|6666666.229899.peg.808 CDS CP012959.1 828897 827542 -3 - 1356 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) ## SSU rRNA m5C967 Conserved gene cluster associated with Met-tRNA formyltransferase;
RNA methylation
fig|6666666.229899.peg.809 CDS CP012959.1 829853 828897 -2 - 957 Methionyl-tRNA formyltransferase (EC 2.1.2.9) Conserved gene cluster associated with Met-tRNA formyltransferase;
Translation initiation factors bacterial
fig|6666666.229899.peg.810 CDS CP012959.1 830431 829919 -1 - 513 Peptide deformylase (EC 3.5.1.88) Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Translation termination factors bacterial
fig|6666666.229899.peg.812 CDS CP012959.1 836872 836360 -1 - 513 Protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-) Heme and Siroheme Biosynthesis;
Transport system clustering with HemG
fig|6666666.229899.peg.813 CDS CP012959.1 838335 836872 -3 - 1464 Potassium uptake protein TrkH Hyperosmotic potassium uptake;
Potassium homeostasis;
Potassium homeostasis;
Transport system clustering with HemG
fig|6666666.229899.peg.814 CDS CP012959.1 838569 838354 -3 - 216 FIG000605: protein co-occurring with transport systems (COG1739) Transport system clustering with HemG
fig|6666666.229899.peg.815 CDS CP012959.1 838719 838600 -3 - 120 FIG000605: protein co-occurring with transport systems (COG1739) Transport system clustering with HemG
fig|6666666.229899.peg.816 CDS CP012959.1 838868 838713 -2 - 156 FIG000605: protein co-occurring with transport systems (COG1739) Transport system clustering with HemG
fig|6666666.229899.peg.817 CDS CP012959.1 838993 838865 -1 - 129 hypothetical protein - none -
fig|6666666.229899.peg.818 CDS CP012959.1 839070 839195 3 + 126 tRNA 5-methylaminomethyl-2-thiouridine synthase TusA mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.229899.peg.819 CDS CP012959.1 839224 839472 1 + 249 FIG01200701: hypothetical protein - none -
fig|6666666.229899.peg.820 CDS CP012959.1 839523 840794 3 + 1272 Nicotinamide-nucleotide adenylyltransferase, NadR family (EC 2.7.7.1) / Ribosylnicotinamide kinase (EC 2.7.1.22) NAD and NADP cofactor biosynthesis global;
NAD and NADP cofactor biosynthesis global
fig|6666666.229899.peg.821 CDS CP012959.1 840810 841493 3 + 684 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases - none -
fig|6666666.229899.peg.822 CDS CP012959.1 841500 841613 3 + 114 hypothetical protein - none -
fig|6666666.229899.peg.823 CDS CP012959.1 841623 842843 3 + 1221 Tyrosine-specific transport protein - none -
fig|6666666.229899.peg.824 CDS CP012959.1 843528 843139 -3 - 390 LSU ribosomal protein L17p Ribosome LSU bacterial
fig|6666666.229899.peg.825 CDS CP012959.1 844559 843570 -2 - 990 DNA-directed RNA polymerase alpha subunit (EC 2.7.7.6) RNA polymerase bacterial
fig|6666666.229899.peg.826 CDS CP012959.1 845208 844588 -3 - 621 SSU ribosomal protein S4p (S9e) Ribosome SSU bacterial
fig|6666666.229899.peg.827 CDS CP012959.1 845627 845238 -2 - 390 SSU ribosomal protein S11p (S14e) Ribosome SSU bacterial
fig|6666666.229899.peg.828 CDS CP012959.1 845999 845643 -2 - 357 SSU ribosomal protein S13p (S18e) Ribosome SSU bacterial
fig|6666666.229899.peg.829 CDS CP012959.1 846250 846137 -1 - 114 LSU ribosomal protein L36p Ribosome LSU bacterial
fig|6666666.229899.peg.830 CDS CP012959.1 847602 846277 -3 - 1326 Preprotein translocase secY subunit (TC 3.A.5.1.1) - none -
fig|6666666.229899.peg.831 CDS CP012959.1 848040 847606 -3 - 435 LSU ribosomal protein L15p (L27Ae) Ribosome LSU bacterial
fig|6666666.229899.peg.832 CDS CP012959.1 848730 848230 -3 - 501 SSU ribosomal protein S5p (S2e) Ribosome SSU bacterial
fig|6666666.229899.peg.833 CDS CP012959.1 849024 848746 -3 - 279 LSU ribosomal protein L18p (L5e) Ribosome LSU bacterial
fig|6666666.229899.peg.834 CDS CP012959.1 849646 849113 -1 - 534 LSU ribosomal protein L6p (L9e) Ribosome LSU bacterial
fig|6666666.229899.peg.835 CDS CP012959.1 850054 849662 -1 - 393 SSU ribosomal protein S8p (S15Ae) Ribosome SSU bacterial
fig|6666666.229899.peg.836 CDS CP012959.1 850396 850091 -1 - 306 SSU ribosomal protein S14p (S29e) @ SSU ribosomal protein S14p (S29e), zinc-independent Ribosome SSU bacterial;
Ribosome SSU bacterial
fig|6666666.229899.peg.837 CDS CP012959.1 850837 850409 -1 - 429 LSU ribosomal protein L5p (L11e) Ribosome LSU bacterial
fig|6666666.229899.peg.838 CDS CP012959.1 851277 850966 -3 - 312 LSU ribosomal protein L24p (L26e) Ribosome LSU bacterial
fig|6666666.229899.peg.839 CDS CP012959.1 851659 851288 -1 - 372 LSU ribosomal protein L14p (L23e) Ribosome LSU bacterial
fig|6666666.229899.peg.840 CDS CP012959.1 851986 852270 1 + 285 Mobile element protein - none -
fig|6666666.229899.peg.841 CDS CP012959.1 853296 852274 -3 - 1023 Porphobilinogen synthase (EC 4.2.1.24) Heme and Siroheme Biosynthesis
fig|6666666.229899.peg.842 CDS CP012959.1 854081 853317 -2 - 765 Twin-arginine translocation protein TatC Cluster-based Subsystem Grouping Hypotheticals - perhaps Proteosome Related;
Twin-arginine translocation system
fig|6666666.229899.peg.843 CDS CP012959.1 854781 854119 -3 - 663 Twin-arginine translocation protein TatB Twin-arginine translocation system
fig|6666666.229899.peg.844 CDS CP012959.1 855009 854785 -3 - 225 Twin-arginine translocation protein TatA Cluster-based Subsystem Grouping Hypotheticals - perhaps Proteosome Related;
Twin-arginine translocation system
fig|6666666.229899.peg.845 CDS CP012959.1 855287 855156 -2 - 132 hypothetical protein - none -
fig|6666666.229899.peg.846 CDS CP012959.1 855733 855557 -1 - 177 hypothetical protein - none -
fig|6666666.229899.peg.847 CDS CP012959.1 856752 855742 -3 - 1011 hypothetical protein - none -
fig|6666666.229899.peg.848 CDS CP012959.1 858746 856755 -2 - 1992 hypothetical protein - none -
fig|6666666.229899.peg.849 CDS CP012959.1 860010 858898 -3 - 1113 hypothetical protein - none -
fig|6666666.229899.peg.850 CDS CP012959.1 860234 860055 -2 - 180 hypothetical protein - none -
fig|6666666.229899.peg.851 CDS CP012959.1 861306 860431 -3 - 876 33 kDa chaperonin (Heat shock protein 33) (HSP33) CBSS-584.1.peg.3382
fig|6666666.229899.peg.852 CDS CP012959.1 861790 861374 -1 - 417 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) CBSS-584.1.peg.3382;
Cell division-ribosomal stress proteins cluster;
DNA replication cluster 1;
Heat shock dnaK gene cluster extended
fig|6666666.229899.peg.853 CDS CP012959.1 862462 861803 -1 - 660 FIG001957: putative hydrolase CBSS-584.1.peg.3382
fig|6666666.229899.peg.854 CDS CP012959.1 862543 863091 1 + 549 ADP compounds hydrolase NudE (EC 3.6.1.-) Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229899.peg.855 CDS CP012959.1 863977 863096 -1 - 882 Transcriptional regulator, AraC family - none -
fig|6666666.229899.peg.856 CDS CP012959.1 864673 864047 -1 - 627 membrane protein ykgB - none -
fig|6666666.229899.peg.857 CDS CP012959.1 865042 867048 1 + 2007 oligopeptide transporter - none -
fig|6666666.229899.peg.858 CDS CP012959.1 867110 867538 2 + 429 hypothetical protein - none -
fig|6666666.229899.peg.859 CDS CP012959.1 867576 868385 3 + 810 3@1(2@1),5@1-bisphosphate nucleotidase (EC 3.1.3.7) - none -
fig|6666666.229899.peg.860 CDS CP012959.1 868408 869967 1 + 1560 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) Entner-Doudoroff Pathway;
Pentose phosphate pathway
fig|6666666.229899.peg.861 CDS CP012959.1 870220 870918 1 + 699 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type Entner-Doudoroff Pathway;
Pentose phosphate pathway
fig|6666666.229899.peg.862 CDS CP012959.1 870931 871389 1 + 459 Uncharacterized virulence-associated protein D - none -
fig|6666666.229899.peg.863 CDS CP012959.1 871924 871778 -1 - 147 hypothetical protein - none -
fig|6666666.229899.peg.864 CDS CP012959.1 871945 873399 1 + 1455 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) D-gluconate and ketogluconates metabolism;
Pentose phosphate pathway
fig|6666666.229899.peg.865 CDS CP012959.1 873876 873745 -3 - 132 hypothetical protein - none -
fig|6666666.229899.peg.866 CDS CP012959.1 874307 875254 2 + 948 Magnesium and cobalt transport protein CorA Magnesium transport
fig|6666666.229899.peg.867 CDS CP012959.1 875270 875830 2 + 561 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) CBSS-630.2.peg.3360
fig|6666666.229899.peg.868 CDS CP012959.1 875855 876148 2 + 294 COG1872 - none -
fig|6666666.229899.peg.869 CDS CP012959.1 876265 876924 1 + 660 Oxygen-insensitive NAD(P)H nitroreductase (EC 1.-.-.-) / Dihydropteridine reductase (EC 1.5.1.34) - none -
fig|6666666.229899.peg.870 CDS CP012959.1 877167 877691 3 + 525 Phosphoglycerol transferase I (EC 2.7.8.20) Synthesis of osmoregulated periplasmic glucans
fig|6666666.229899.peg.871 CDS CP012959.1 877734 878963 3 + 1230 Phosphoglycerol transferase I (EC 2.7.8.20) Synthesis of osmoregulated periplasmic glucans
fig|6666666.229899.peg.872 CDS CP012959.1 879409 879266 -1 - 144 hypothetical protein - none -
fig|6666666.229899.peg.873 CDS CP012959.1 880329 880180 -3 - 150 hypothetical protein - none -
fig|6666666.229899.peg.874 CDS CP012959.1 881435 880698 -2 - 738 COG1496: Uncharacterized conserved protein - none -
fig|6666666.229899.peg.875 CDS CP012959.1 882411 881437 -3 - 975 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) RNA pseudouridine syntheses;
Ribosome biogenesis bacterial
fig|6666666.229899.peg.876 CDS CP012959.1 882518 883306 2 + 789 Probable component of the lipoprotein assembly complex (forms a complex with YaeT, YfgL, and NlpB) Lipopolysaccharide assembly
fig|6666666.229899.peg.877 CDS CP012959.1 883919 883344 -2 - 576 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) 5-FCL-like protein;
Folate Biosynthesis;
One-carbon metabolism by tetrahydropterines;
Serine-glyoxylate cycle
fig|6666666.229899.peg.878 CDS CP012959.1 884518 884213 -1 - 306 Z-ring-associated protein ZapA Bacterial Cytoskeleton
fig|6666666.229899.peg.879 CDS CP012959.1 884512 885246 1 + 735 FIG001590: Putative conserved exported protein precursor CBSS-87626.3.peg.3639
fig|6666666.229899.peg.880 CDS CP012959.1 885261 886562 3 + 1302 Xaa-Pro aminopeptidase (EC 3.4.11.9) Aminopeptidases (EC 3.4.11.-);
CBSS-87626.3.peg.3639
fig|6666666.229899.peg.881 CDS CP012959.1 886871 886716 -2 - 156 hypothetical protein - none -
fig|6666666.229899.peg.882 CDS CP012959.1 887057 887305 2 + 249 SSU ribosomal protein S16p Ribosome SSU bacterial
fig|6666666.229899.peg.883 CDS CP012959.1 887331 887858 3 + 528 16S rRNA processing protein RimM Ribosome biogenesis bacterial
fig|6666666.229899.peg.884 CDS CP012959.1 887924 888673 2 + 750 tRNA (Guanine37-N1) -methyltransferase (EC 2.1.1.31) RNA methylation;
Ribosome biogenesis bacterial;
tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229899.peg.885 CDS CP012959.1 888699 889049 3 + 351 LSU ribosomal protein L19p Ribosome LSU bacterial
fig|6666666.229899.peg.886 CDS CP012959.1 889647 889159 -3 - 489 Rod shape-determining protein MreD Bacterial Cell Division;
Bacterial Cytoskeleton;
CBSS-354.1.peg.2917
fig|6666666.229899.peg.887 CDS CP012959.1 890720 889647 -2 - 1074 Rod shape-determining protein MreC Bacterial Cell Division;
Bacterial Cytoskeleton;
CBSS-354.1.peg.2917
fig|6666666.229899.peg.888 CDS CP012959.1 891845 890790 -2 - 1056 Rod shape-determining protein MreB Bacterial Cell Division;
Bacterial Cytoskeleton
fig|6666666.229899.peg.889 CDS CP012959.1 892095 894500 3 + 2406 3@1-to-5@1 exoribonuclease RNase R RNA processing and degradation, bacterial
fig|6666666.229899.peg.890 CDS CP012959.1 894497 895234 2 + 738 23S rRNA (guanosine-2@1-O-) -methyltransferase rlmB (EC 2.1.1.-) RNA methylation
fig|6666666.229899.peg.891 CDS CP012959.1 895377 895547 3 + 171 hypothetical protein - none -
fig|6666666.229899.peg.892 CDS CP012959.1 895567 897009 1 + 1443 Glycerol-3-phosphate transporter - none -
fig|6666666.229899.peg.893 CDS CP012959.1 897241 898323 1 + 1083 Glycerophosphoryl diester phosphodiesterase, periplasmic (EC 3.1.4.46) - none -
fig|6666666.229899.peg.894 CDS CP012959.1 899497 898379 -1 - 1119 Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake CBSS-272943.3.peg.1367;
Conserved gene cluster associated with Met-tRNA formyltransferase;
YrdC-YciO-Sua5 protein family
fig|6666666.229899.peg.895 CDS CP012959.1 899725 899528 -1 - 198 hypothetical protein - none -
fig|6666666.229899.peg.896 CDS CP012959.1 900164 899715 -2 - 450 LSU ribosomal protein L9p Primosomal replication protein N clusters with ribosomal proteins;
Ribosome LSU bacterial
fig|6666666.229899.peg.897 CDS CP012959.1 900410 900180 -2 - 231 SSU ribosomal protein S18p @ SSU ribosomal protein S18p, zinc-independent Primosomal replication protein N clusters with ribosomal proteins;
Ribosome SSU bacterial;
Ribosome SSU bacterial
fig|6666666.229899.peg.898 CDS CP012959.1 900749 900423 -2 - 327 Primosomal replication protein N Primosomal replication protein N clusters with ribosomal proteins
fig|6666666.229899.peg.899 CDS CP012959.1 901113 900736 -3 - 378 SSU ribosomal protein S6p Primosomal replication protein N clusters with ribosomal proteins;
Ribosome SSU bacterial
fig|6666666.229899.peg.900 CDS CP012959.1 901888 901265 -1 - 624 SOS-response repressor and protease LexA (EC 3.4.21.88) DNA repair, bacterial
fig|6666666.229899.peg.901 CDS CP012959.1 902096 904534 2 + 2439 Glycerol-3-phosphate acyltransferase (EC 2.3.1.15) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229899.peg.902 CDS CP012959.1 906419 904575 -2 - 1845 Lipid A export ATP-binding/permease protein MsbA - none -
fig|6666666.229899.peg.903 CDS CP012959.1 907424 906507 -2 - 918 transcriptional regulator MtrA - none -
fig|6666666.229899.peg.904 CDS CP012959.1 907528 907869 1 + 342 Possible carboxymuconolactone decarboxylase family protein (EC 4.1.1.44) - none -
fig|6666666.229899.peg.905 CDS CP012959.1 909009 907966 -3 - 1044 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) LOS core oligosaccharide biosynthesis
fig|6666666.229899.peg.906 CDS CP012959.1 909098 909823 2 + 726 3-deoxy-D-manno-octulosonic acid kinase (EC 2.7.1.-) - none -
fig|6666666.229899.peg.907 CDS CP012959.1 910366 909872 -1 - 495 Phosphopantetheine adenylyltransferase (EC 2.7.7.3) CBSS-266117.6.peg.1260;
CBSS-269801.1.peg.1715;
Coenzyme A Biosynthesis
fig|6666666.229899.peg.908 CDS CP012959.1 911650 910367 -1 - 1284 3-deoxy-D-manno-octulosonic-acid transferase (EC 2.-.-.-) KDO2-Lipid A biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.229899.peg.909 CDS CP012959.1 911749 912510 1 + 762 Lipopolysaccharide biosynthesis glycosyltransferase - none -
fig|6666666.229899.peg.910 CDS CP012959.1 912864 912568 -3 - 297 HigA protein (antitoxin to HigB) Toxin-antitoxin replicon stabilization systems
fig|6666666.229899.peg.911 CDS CP012959.1 913156 912881 -1 - 276 HigB toxin protein Toxin-antitoxin replicon stabilization systems
fig|6666666.229899.peg.912 CDS CP012959.1 914640 913273 -3 - 1368 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229899.peg.913 CDS CP012959.1 914826 915902 3 + 1077 hypothetical tRNA/rRNA methyltransferase yfiF [EC:2.1.1.-] RNA methylation;
tRNA modification Bacteria
fig|6666666.229899.peg.914 CDS CP012959.1 916190 915969 -2 - 222 4Fe-4S ferredoxin, iron-sulfur binding - none -
fig|6666666.229899.peg.915 CDS CP012959.1 916297 916992 1 + 696 Probable ribonuclease HI0526 precursor - none -
fig|6666666.229899.peg.916 CDS CP012959.1 917109 918272 3 + 1164 Phosphoglycerate kinase (EC 2.7.2.3) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis
fig|6666666.229899.peg.917 CDS CP012959.1 918337 919416 1 + 1080 Fructose-bisphosphate aldolase class II (EC 4.1.2.13) Glycolysis and Gluconeogenesis
fig|6666666.229899.peg.918 CDS CP012959.1 919591 919418 -1 - 174 hypothetical protein - none -
fig|6666666.229899.peg.919 CDS CP012959.1 919625 920767 2 + 1143 O-antigen ligase LOS core oligosaccharide biosynthesis
fig|6666666.229899.peg.920 CDS CP012959.1 920760 921683 3 + 924 Lysophospholipase L2 (EC 3.1.1.5) Triacylglycerol metabolism
fig|6666666.229899.peg.921 CDS CP012959.1 922539 921721 -3 - 819 Cof protein, HD superfamily hydrolase Housecleaning nucleoside triphosphate pyrophosphatases
fig|6666666.229899.peg.922 CDS CP012959.1 922758 923555 3 + 798 Acetolactate synthase large subunit (EC 2.2.1.6) - none -
fig|6666666.229899.peg.923 CDS CP012959.1 923507 923692 2 + 186 Acetolactate synthase large subunit (EC 2.2.1.6) - none -
fig|6666666.229899.peg.924 CDS CP012959.1 923897 923781 -2 - 117 hypothetical protein - none -
fig|6666666.229899.peg.925 CDS CP012959.1 925339 924155 -1 - 1185 Translation elongation factor Tu Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Translation elongation factors bacterial;
Universal GTPases
fig|6666666.229899.peg.926 CDS CP012959.1 926072 926986 2 + 915 Pantothenate kinase (EC 2.7.1.33) Coenzyme A Biosynthesis
fig|6666666.229899.peg.927 CDS CP012959.1 929461 927041 -1 - 2421 DNA gyrase subunit B (EC 5.99.1.3) Cell Division Subsystem including YidCD;
DNA gyrase subunits;
DNA replication cluster 1;
DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.229899.peg.928 CDS CP012959.1 931447 929558 -1 - 1890 ATP-dependent DNA helicase RecQ DNA repair, bacterial RecFOR pathway
fig|6666666.229899.peg.929 CDS CP012959.1 931758 931444 -3 - 315 Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly Biogenesis of cytochrome c oxidases
fig|6666666.229899.peg.930 CDS CP012959.1 931881 932000 3 + 120 hypothetical protein - none -
fig|6666666.229899.peg.931 CDS CP012959.1 932018 933268 2 + 1251 Diaminopimelate decarboxylase (EC 4.1.1.20) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229899.peg.932 CDS CP012959.1 933926 933321 -2 - 606 probable integral membrane protein Cj0014c - none -
fig|6666666.229899.peg.933 CDS CP012959.1 934127 934687 2 + 561 DNA-3-methyladenine glycosylase (EC 3.2.2.20) CBSS-326442.4.peg.1852;
DNA Repair Base Excision
fig|6666666.229899.peg.934 CDS CP012959.1 934753 937095 1 + 2343 Outer membrane protein Imp, required for envelope biogenesis / Organic solvent tolerance protein precursor Lipopolysaccharide assembly
fig|6666666.229899.peg.935 CDS CP012959.1 937724 937185 -2 - 540 Xanthine-guanine phosphoribosyltransferase (EC 2.4.2.22) Purine conversions
fig|6666666.229899.peg.936 CDS CP012959.1 937764 939224 3 + 1461 Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3) Dipeptidases (EC 3.4.13.-);
Recycling of Peptidoglycan Amino Acids
fig|6666666.229899.peg.937 CDS CP012959.1 940059 939304 -3 - 756 Short chain dehydrogenase - none -
fig|6666666.229899.peg.938 CDS CP012959.1 940664 940113 -2 - 552 Molybdopterin-guanine dinucleotide biosynthesis protein MobB Molybdenum cofactor biosynthesis;
ar-431-EC Molybdopterin-guanine dinucleotide biosynthesis
fig|6666666.229899.peg.939 CDS CP012959.1 941182 940745 -1 - 438 Sigma factor RpoE regulatory protein RseC Transcription initiation, bacterial sigma factors
fig|6666666.229899.peg.940 CDS CP012959.1 942148 941192 -1 - 957 Sigma factor RpoE negative regulatory protein RseB precursor Periplasmic Stress Response;
Transcription initiation, bacterial sigma factors
fig|6666666.229899.peg.941 CDS CP012959.1 942815 942231 -2 - 585 Sigma factor RpoE negative regulatory protein RseA Periplasmic Stress Response;
Transcription initiation, bacterial sigma factors
fig|6666666.229899.peg.942 CDS CP012959.1 943434 942859 -3 - 576 RNA polymerase sigma factor RpoE Transcription initiation, bacterial sigma factors
fig|6666666.229899.peg.943 CDS CP012959.1 943821 943567 -3 - 255 YgfY COG2938 - none -
fig|6666666.229899.peg.944 CDS CP012959.1 944190 943861 -3 - 330 Ethidium bromide-methyl viologen resistance protein EmrE - none -
fig|6666666.229899.peg.945 CDS CP012959.1 945972 944257 -3 - 1716 Prolyl-tRNA synthetase (EC 6.1.1.15), bacterial type tRNA aminoacylation, Pro
fig|6666666.229899.peg.946 CDS CP012959.1 946122 947516 3 + 1395 L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1) Selenocysteine metabolism
fig|6666666.229899.peg.947 CDS CP012959.1 947513 949372 2 + 1860 Selenocysteine-specific translation elongation factor Selenocysteine metabolism
fig|6666666.229899.peg.948 CDS CP012959.1 949418 950320 2 + 903 hypothetical protein - none -
fig|6666666.229899.peg.949 CDS CP012959.1 950395 951525 1 + 1131 hypothetical protein - none -
fig|6666666.229899.peg.950 CDS CP012959.1 951562 952467 1 + 906 hypothetical protein - none -
fig|6666666.229899.peg.951 CDS CP012959.1 952779 953576 3 + 798 hypothetical protein - none -
fig|6666666.229899.peg.952 CDS CP012959.1 953693 955033 2 + 1341 hypothetical protein - none -
fig|6666666.229899.peg.953 CDS CP012959.1 955045 955710 1 + 666 hypothetical protein - none -
fig|6666666.229899.peg.954 CDS CP012959.1 955840 956217 1 + 378 hypothetical protein - none -
fig|6666666.229899.peg.955 CDS CP012959.1 956268 957341 3 + 1074 hypothetical protein - none -
fig|6666666.229899.peg.956 CDS CP012959.1 957338 957982 2 + 645 hypothetical protein - none -
fig|6666666.229899.peg.957 CDS CP012959.1 958174 958305 1 + 132 hypothetical protein - none -
fig|6666666.229899.peg.958 CDS CP012959.1 958584 960545 3 + 1962 ClpB protein Protein chaperones;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229899.peg.959 CDS CP012959.1 960506 961177 2 + 672 ClpB protein Protein chaperones;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229899.peg.960 CDS CP012959.1 961294 962712 1 + 1419 hypothetical protein - none -
fig|6666666.229899.peg.961 CDS CP012959.1 963210 965561 3 + 2352 hypothetical protein - none -
fig|6666666.229899.peg.962 CDS CP012959.1 965571 966578 3 + 1008 hypothetical protein - none -
fig|6666666.229899.peg.963 CDS CP012959.1 966642 966869 3 + 228 hypothetical protein - none -
fig|6666666.229899.peg.964 CDS CP012959.1 967732 967151 -1 - 582 Molybdopterin biosynthesis molybdochelatase MogA Molybdenum cofactor biosynthesis
fig|6666666.229899.peg.965 CDS CP012959.1 968751 967822 -3 - 930 Phosphatidate cytidylyltransferase (EC 2.7.7.41) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229899.peg.966 CDS CP012959.1 969383 968751 -2 - 633 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229899.peg.967 CDS CP012959.1 970002 969394 -3 - 609 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229899.peg.968 CDS CP012959.1 971881 970013 -1 - 1869 Putative transport protein - none -
fig|6666666.229899.peg.969 CDS CP012959.1 972520 971921 -1 - 600 Ribonuclease HII (EC 3.1.26.4) Conserved gene cluster associated with Met-tRNA formyltransferase;
Ribonuclease H
fig|6666666.229899.peg.970 CDS CP012959.1 973697 972513 -2 - 1185 Lipid-A-disaccharide synthase (EC 2.4.1.182) KDO2-Lipid A biosynthesis;
Llipid A biosynthesis cluster
fig|6666666.229899.peg.971 CDS CP012959.1 974570 973782 -2 - 789 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase (EC 2.3.1.129) KDO2-Lipid A biosynthesis;
Llipid A biosynthesis cluster
fig|6666666.229899.peg.972 CDS CP012959.1 975001 974591 -1 - 411 3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabZ form (EC 4.2.1.59) Fatty Acid Biosynthesis FASII;
Llipid A biosynthesis cluster
fig|6666666.229899.peg.973 CDS CP012959.1 976160 975138 -2 - 1023 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC 2.3.1.-) KDO2-Lipid A biosynthesis;
Llipid A biosynthesis cluster
fig|6666666.229899.peg.974 CDS CP012959.1 976735 976160 -1 - 576 Outer membrane chaperone Skp (OmpH) precursor @ Outer membrane protein H precursor Lipopolysaccharide assembly;
Llipid A biosynthesis cluster;
Periplasmic Stress Response
fig|6666666.229899.peg.975 CDS CP012959.1 979251 976840 -3 - 2412 Outer membrane protein assembly factor YaeT precursor Lipopolysaccharide assembly;
Llipid A biosynthesis cluster
fig|6666666.229899.peg.976 CDS CP012959.1 980604 979270 -3 - 1335 Intramembrane protease RasP/YluC, implicated in cell division based on FtsL cleavage CBSS-83331.1.peg.3039;
Periplasmic Stress Response
fig|6666666.229899.peg.977 CDS CP012959.1 981482 980613 -2 - 870 Phosphatidate cytidylyltransferase (EC 2.7.7.41) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229899.peg.978 CDS CP012959.1 982216 981497 -1 - 720 Undecaprenyl diphosphate synthase (EC 2.5.1.31) CBSS-83331.1.peg.3039;
Isoprenoid Biosynthesis;
Isoprenoinds for Quinones;
Polyprenyl Diphosphate Biosynthesis
fig|6666666.229899.peg.979 CDS CP012959.1 983521 982238 -1 - 1284 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.267) CBSS-83331.1.peg.3039;
Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.229899.peg.980 CDS CP012959.1 984107 983550 -2 - 558 Ribosome recycling factor Ribosome recycling related cluster;
Translation termination factors bacterial
fig|6666666.229899.peg.981 CDS CP012959.1 984264 984121 -3 - 144 hypothetical protein - none -
fig|6666666.229899.peg.982 CDS CP012959.1 985045 984332 -1 - 714 Uridine monophosphate kinase (EC 2.7.4.22) CBSS-312309.3.peg.1965;
Ribosome recycling related cluster
fig|6666666.229899.peg.983 CDS CP012959.1 985190 985077 -2 - 114 hypothetical protein - none -
fig|6666666.229899.peg.984 CDS CP012959.1 986860 985202 -1 - 1659 Mediator of hyperadherence YidE - none -
fig|6666666.229899.peg.985 CDS CP012959.1 986984 988801 2 + 1818 ABC transporter ATP-binding protein - none -
fig|6666666.229899.peg.986 CDS CP012959.1 989681 989391 -2 - 291 Probable tonB-dependent receptor HI1217 precursor - none -
fig|6666666.229899.peg.987 CDS CP012959.1 992141 989685 -2 - 2457 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229899.peg.988 CDS CP012959.1 993231 992476 -3 - 756 Glycerol-3-phosphate regulon repressor GlpR - none -
fig|6666666.229899.peg.989 CDS CP012959.1 994168 993293 -1 - 876 GlpG protein (membrane protein of glp regulon) - none -
fig|6666666.229899.peg.990 CDS CP012959.1 994211 994525 2 + 315 Uncharacterized protein PM1437 - none -
fig|6666666.229899.peg.991 CDS CP012959.1 994863 994537 -3 - 327 Thiosulfate sulfurtransferase GlpE (EC 2.8.1.1) Single-Rhodanese-domain proteins
fig|6666666.229899.peg.992 CDS CP012959.1 995528 994875 -2 - 654 FIG00903983: hypothetical protein - none -
fig|6666666.229899.peg.993 CDS CP012959.1 997303 995549 -1 - 1755 DNA recombination protein RmuC DNA repair, bacterial
fig|6666666.229899.peg.994 CDS CP012959.1 997306 997845 1 + 540 Similar to C-terminal Zn-finger domain of DNA topoisomerase I Conserved gene cluster associated with Met-tRNA formyltransferase;
DNA topoisomerases, Type I, ATP-independent
fig|6666666.229899.peg.995 CDS CP012959.1 997850 998401 2 + 552 TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA - none -
fig|6666666.229899.peg.996 CDS CP012959.1 998405 999205 2 + 801 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) Chorismate Synthesis;
Cluster containing Alanyl-tRNA synthetase;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229899.peg.997 CDS CP012959.1 1000081 999200 -1 - 882 Protein rarD - none -
fig|6666666.229899.peg.998 CDS CP012959.1 1000299 1000114 -3 - 186 HTH-type transcriptional regulator IlvY Alanine biosynthesis;
LysR-family proteins in Escherichia coli;
LysR-family proteins in Salmonella enterica Typhimurium
fig|6666666.229899.peg.999 CDS CP012959.1 1000931 1001239 2 + 309 Ketol-acid reductoisomerase (EC 1.1.1.86) Coenzyme A Biosynthesis
fig|6666666.229899.peg.1000 CDS CP012959.1 1001403 1001519 3 + 117 SSU ribosomal protein S12p (S23e) Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Ribosomal protein S12p Asp methylthiotransferase;
Ribosome SSU bacterial
fig|6666666.229899.peg.1001 CDS CP012959.1 1001698 1001835 1 + 138 SSU ribosomal protein S12p (S23e) Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Ribosomal protein S12p Asp methylthiotransferase;
Ribosome SSU bacterial
fig|6666666.229899.peg.1002 CDS CP012959.1 1001988 1002458 3 + 471 SSU ribosomal protein S7p (S5e) Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Ribosome SSU bacterial
fig|6666666.229899.peg.1003 CDS CP012959.1 1002573 1004675 3 + 2103 Translation elongation factor G Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Translation elongation factor G family;
Translation elongation factors bacterial;
Universal GTPases
fig|6666666.229899.peg.1004 CDS CP012959.1 1004739 1005923 3 + 1185 Translation elongation factor Tu Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Translation elongation factors bacterial;
Universal GTPases
fig|6666666.229899.peg.1005 CDS CP012959.1 1006934 1005993 -2 - 942 Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229899.peg.1006 CDS CP012959.1 1007097 1008584 3 + 1488 Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229899.peg.1007 CDS CP012959.1 1008600 1009628 3 + 1029 Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229899.peg.1008 CDS CP012959.1 1009634 1011091 2 + 1458 L-xylulose/3-keto-L-gulonate kinase (EC 2.7.1.-) L-ascorbate utilization (and related gene clusters)
fig|6666666.229899.peg.1009 CDS CP012959.1 1013454 1011139 -3 - 2316 Transcription accessory protein (S1 RNA-binding domain) CBSS-243265.1.peg.198;
Cell division-ribosomal stress proteins cluster;
Transcription factors bacterial
fig|6666666.229899.peg.1010 CDS CP012959.1 1013707 1014081 1 + 375 hypothetical protein - none -
fig|6666666.229899.peg.1011 CDS CP012959.1 1014078 1014380 3 + 303 Mobile element protein - none -
fig|6666666.229899.peg.1012 CDS CP012959.1 1014374 1014883 2 + 510 Mobile element protein - none -
fig|6666666.229899.peg.1013 CDS CP012959.1 1015819 1014932 -1 - 888 RuBisCO operon transcriptional regulator CO2 uptake, carboxysome
fig|6666666.229899.peg.1014 CDS CP012959.1 1015929 1017398 3 + 1470 Sodium-dependent transporter - none -
fig|6666666.229899.peg.1015 CDS CP012959.1 1017410 1018009 2 + 600 Phosphoglycerate mutase (EC 5.4.2.1) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis;
Phosphoglycerate mutase protein family
fig|6666666.229899.peg.1016 CDS CP012959.1 1018195 1018359 1 + 165 hypothetical protein - none -
fig|6666666.229899.peg.1017 CDS CP012959.1 1018595 1018404 -2 - 192 Transcription accessory protein (S1 RNA-binding domain) CBSS-243265.1.peg.198;
Cell division-ribosomal stress proteins cluster;
Transcription factors bacterial
fig|6666666.229899.peg.1018 CDS CP012959.1 1018746 1019228 3 + 483 Transcription elongation factor GreB CBSS-243265.1.peg.198;
Transcription factors bacterial
fig|6666666.229899.peg.1019 CDS CP012959.1 1019502 1019311 -3 - 192 hypothetical protein - none -
fig|6666666.229899.peg.1020 CDS CP012959.1 1020104 1019517 -2 - 588 DNA-directed RNA polymerase specialized sigma subunit, sigma24-like - none -
fig|6666666.229899.peg.1021 CDS CP012959.1 1020571 1020290 -1 - 282 hypothetical protein - none -
fig|6666666.229899.peg.1022 CDS CP012959.1 1020833 1021570 2 + 738 Putative preQ0 transporter Queuosine-Archaeosine Biosynthesis
fig|6666666.229899.peg.1023 CDS CP012959.1 1022889 1021639 -3 - 1251 Uncharacterized protein EC-HemY, likely associated with heme metabolism based on gene clustering with hemC, hemD in Proteobacteria (unrelated to HemY-type PPO in GramPositives) - none -
fig|6666666.229899.peg.1024 CDS CP012959.1 1024287 1022902 -3 - 1386 Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) Heme and Siroheme Biosynthesis
fig|6666666.229899.peg.1025 CDS CP012959.1 1025064 1024318 -3 - 747 Uroporphyrinogen-III synthase (EC 4.2.1.75) Heme and Siroheme Biosynthesis
fig|6666666.229899.peg.1026 CDS CP012959.1 1026004 1025078 -1 - 927 Porphobilinogen deaminase (EC 2.5.1.61) Heme and Siroheme Biosynthesis
fig|6666666.229899.peg.1027 CDS CP012959.1 1026160 1028661 1 + 2502 Adenylate cyclase (EC 4.6.1.1) cAMP signaling in bacteria
fig|6666666.229899.peg.1028 CDS CP012959.1 1028671 1029300 1 + 630 Nitrate/nitrite response regulator protein Nitrate and nitrite ammonification
fig|6666666.229899.peg.1029 CDS CP012959.1 1029368 1031227 2 + 1860 Uncharacterized protein YtfM precursor Cluster Ytf and putative sugar transporter;
Putative sugar ABC transporter (ytf cluster)
fig|6666666.229899.peg.1030 CDS CP012959.1 1031255 1035136 2 + 3882 Uncharacterized protein YtfN Cluster Ytf and putative sugar transporter;
Putative sugar ABC transporter (ytf cluster)
fig|6666666.229899.peg.1031 CDS CP012959.1 1035139 1036686 1 + 1548 Exopolyphosphatase (EC 3.6.1.11) Phosphate metabolism;
Polyphosphate
fig|6666666.229899.peg.1032 CDS CP012959.1 1038367 1036751 -1 - 1617 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) CBSS-584.1.peg.3382;
Pyruvate metabolism I: anaplerotic reactions, PEP;
Serine-glyoxylate cycle
fig|6666666.229899.peg.1033 CDS CP012959.1 1038599 1038474 -2 - 126 hypothetical protein - none -
fig|6666666.229899.peg.1034 CDS CP012959.1 1038625 1039269 1 + 645 converved hypothetical protein - none -
fig|6666666.229899.peg.1035 CDS CP012959.1 1039318 1040037 1 + 720 NADH pyrophosphatase (EC 3.6.1.22) DNA uptake cluster;
Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229899.peg.1036 CDS CP012959.1 1040206 1041270 1 + 1065 Uroporphyrinogen III decarboxylase (EC 4.1.1.37) Heme and Siroheme Biosynthesis
fig|6666666.229899.peg.1037 CDS CP012959.1 1041288 1041878 3 + 591 FIG01200173: hypothetical protein - none -
fig|6666666.229899.peg.1038 CDS CP012959.1 1042045 1042317 1 + 273 DNA-binding protein HU-alpha DNA structural proteins, bacterial;
DNA uptake cluster
fig|6666666.229899.peg.1039 CDS CP012959.1 1042443 1043240 3 + 798 Transcriptional regulator of glmS gene, DeoR family - none -
fig|6666666.229899.peg.1040 CDS CP012959.1 1043294 1045126 2 + 1833 Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) Sialic Acid Metabolism;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229899.peg.1041 CDS CP012959.1 1046342 1045278 -2 - 1065 FIG01220323: hypothetical protein - none -
fig|6666666.229899.peg.1042 CDS CP012959.1 1046442 1047332 3 + 891 Transcriptional regulator, LysR family - none -
fig|6666666.229899.peg.1043 CDS CP012959.1 1048580 1047471 -2 - 1110 Putative exported protein precursor - none -
fig|6666666.229899.peg.1044 CDS CP012959.1 1050372 1048717 -3 - 1656 Carboxylesterase type B - none -
fig|6666666.229899.peg.1045 CDS CP012959.1 1051578 1050598 -3 - 981 Aldo-keto reductase - none -
fig|6666666.229899.peg.1046 CDS CP012959.1 1052487 1051642 -3 - 846 oxidoreductase of aldo/keto reductase family, subgroup 1 - none -
fig|6666666.229899.peg.1047 CDS CP012959.1 1052670 1053563 3 + 894 Transcriptional regulator, LysR family - none -
fig|6666666.229899.peg.1048 CDS CP012959.1 1054467 1053652 -3 - 816 putative tetracenomycin polyketide synthesis O-methyltransferase - none -
fig|6666666.229899.peg.1049 CDS CP012959.1 1056304 1054805 -1 - 1500 ATPase component BioM of energizing module of biotin ECF transporter Biotin biosynthesis;
Biotin synthesis cluster
fig|6666666.229899.peg.1050 CDS CP012959.1 1056430 1057098 1 + 669 Uncharacterized protein conserved in bacteria - none -
fig|6666666.229899.peg.1051 CDS CP012959.1 1057101 1057574 3 + 474 UPF0225 protein YchJ Broadly distributed proteins not in subsystems
fig|6666666.229899.peg.1052 CDS CP012959.1 1057571 1058401 2 + 831 Ribonuclease BN (EC 3.1.-.-) - none -
fig|6666666.229899.peg.1053 CDS CP012959.1 1058398 1058832 1 + 435 D-tyrosyl-tRNA(Tyr) deacylase (EC 3.6.1.n1) - none -
fig|6666666.229899.peg.1054 CDS CP012959.1 1058998 1060206 1 + 1209 Sodium/glutamate symport protein - none -
fig|6666666.229899.peg.1055 CDS CP012959.1 1061650 1060262 -1 - 1389 Copper sensory histidine kinase CpxA Orphan regulatory proteins
fig|6666666.229899.peg.1056 CDS CP012959.1 1062390 1061695 -3 - 696 Copper-sensing two-component system response regulator CpxR Orphan regulatory proteins
fig|6666666.229899.peg.1057 CDS CP012959.1 1062845 1062432 -2 - 414 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex Lipopolysaccharide assembly
fig|6666666.229899.peg.1058 CDS CP012959.1 1063936 1062911 -1 - 1026 Nucleoid-associated protein NdpA CBSS-211586.1.peg.1979
fig|6666666.229899.peg.1059 CDS CP012959.1 1064029 1064286 1 + 258 FIG002927: hypothetical protein CBSS-211586.1.peg.1979
fig|6666666.229899.peg.1060 CDS CP012959.1 1064291 1066030 2 + 1740 FIG001881: hydrolase of alkaline phosphatase superfamily CBSS-211586.1.peg.1979
fig|6666666.229899.peg.1061 CDS CP012959.1 1066304 1066167 -2 - 138 hypothetical protein - none -
fig|6666666.229899.peg.1062 CDS CP012959.1 1066290 1067279 3 + 990 Cytosine deaminase (EC 3.5.4.1) CBSS-326442.4.peg.1852;
Creatine and Creatinine Degradation;
pyrimidine conversions
fig|6666666.229899.peg.1063 CDS CP012959.1 1068171 1067377 -3 - 795 Nucleoside triphosphate pyrophosphohydrolase MazG (EC 3.6.1.8) Nucleoside triphosphate pyrophosphohydrolase MazG
fig|6666666.229899.peg.1064 CDS CP012959.1 1068353 1068778 2 + 426 Universal stress protein A Universal stress protein family
fig|6666666.229899.peg.1065 CDS CP012959.1 1068978 1071602 3 + 2625 Alanyl-tRNA synthetase (EC 6.1.1.7) Cluster containing Alanyl-tRNA synthetase;
tRNA aminoacylation, Ala
fig|6666666.229899.peg.1066 CDS CP012959.1 1071725 1071907 2 + 183 Carbon storage regulator Carbon Starvation;
Carbon storage regulator
fig|6666666.229899.peg.1067 CDS CP012959.1 1071984 1073303 3 + 1320 Phosphomannomutase (EC 5.4.2.8) Mannose Metabolism
fig|6666666.229899.peg.1068 CDS CP012959.1 1073379 1074266 3 + 888 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) - none -
fig|6666666.229899.peg.1069 CDS CP012959.1 1074421 1074738 1 + 318 Methionine repressor MetJ Methionine Biosynthesis
fig|6666666.229899.peg.1070 CDS CP012959.1 1074826 1074695 -1 - 132 hypothetical protein - none -
fig|6666666.229899.peg.1071 CDS CP012959.1 1074825 1075559 3 + 735 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) Cluster containing Glutathione synthetase;
Heat shock dnaK gene cluster extended;
RNA methylation
fig|6666666.229899.peg.1072 CDS CP012959.1 1075577 1076134 2 + 558 UPF0301 protein YqgE Cluster containing Glutathione synthetase
fig|6666666.229899.peg.1073 CDS CP012959.1 1076134 1076553 1 + 420 Putative Holliday junction resolvase YggF Cluster containing Alanyl-tRNA synthetase;
Cluster containing Glutathione synthetase
fig|6666666.229899.peg.1074 CDS CP012959.1 1077960 1076650 -3 - 1311 Enolase (EC 4.2.1.11) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis;
Serine-glyoxylate cycle
fig|6666666.229899.peg.1075 CDS CP012959.1 1078369 1078229 -1 - 141 hypothetical protein - none -
fig|6666666.229899.peg.1076 CDS CP012959.1 1079751 1078600 -3 - 1152 tRNA-specific 2-thiouridylase MnmA RNA methylation
fig|6666666.229899.peg.1077 CDS CP012959.1 1080269 1080012 -2 - 258 Probable exported or periplasmic protein in ApbE locus Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229899.peg.1078 CDS CP012959.1 1081436 1080348 -2 - 1089 Thiamin biosynthesis lipoprotein ApbE - none -
fig|6666666.229899.peg.1079 CDS CP012959.1 1081582 1081433 -1 - 150 hypothetical protein - none -
fig|6666666.229899.peg.1080 CDS CP012959.1 1082822 1081587 -2 - 1236 Na(+)-translocating NADH-quinone reductase subunit F (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229899.peg.1081 CDS CP012959.1 1083430 1082834 -1 - 597 Na(+)-translocating NADH-quinone reductase subunit E (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229899.peg.1082 CDS CP012959.1 1084063 1083434 -1 - 630 Na(+)-translocating NADH-quinone reductase subunit D (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229899.peg.1083 CDS CP012959.1 1084848 1084063 -3 - 786 Na(+)-translocating NADH-quinone reductase subunit C (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229899.peg.1084 CDS CP012959.1 1086076 1084841 -1 - 1236 Na(+)-translocating NADH-quinone reductase subunit B (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229899.peg.1085 CDS CP012959.1 1087419 1086079 -3 - 1341 Na(+)-translocating NADH-quinone reductase subunit A (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229899.peg.1086 CDS CP012959.1 1087611 1087444 -3 - 168 hypothetical protein - none -
fig|6666666.229899.peg.1087 CDS CP012959.1 1087765 1087649 -1 - 117 hypothetical protein - none -
fig|6666666.229899.peg.1088 CDS CP012959.1 1088086 1087775 -1 - 312 Cell division protein BolA Bacterial Cell Division;
CBSS-339671.5.peg.589
fig|6666666.229899.peg.1089 CDS CP012959.1 1088190 1088783 3 + 594 Hypothetical lipoprotein YajG precursor CBSS-339671.5.peg.589
fig|6666666.229899.peg.1090 CDS CP012959.1 1088889 1088764 -3 - 126 hypothetical protein - none -
fig|6666666.229899.peg.1091 CDS CP012959.1 1090363 1089284 -1 - 1080 Membrane-bound lytic murein transglycosylase C precursor (EC 3.2.1.-) Murein Hydrolases
fig|6666666.229899.peg.1092 CDS CP012959.1 1090644 1090366 -3 - 279 FIG001341: Probable Fe(2+)-trafficking protein YggX Heat shock dnaK gene cluster extended
fig|6666666.229899.peg.1093 CDS CP012959.1 1091881 1090622 -1 - 1260 A/G-specific adenine glycosylase (EC 3.2.2.-) DNA repair, bacterial
fig|6666666.229899.peg.1094 CDS CP012959.1 1091979 1092746 3 + 768 tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33) CBSS-83333.1.peg.2911;
RNA methylation;
tRNA modification Bacteria
fig|6666666.229899.peg.1095 CDS CP012959.1 1092776 1093117 2 + 342 FIG002060: uncharacterized protein YggL CBSS-83333.1.peg.2911
fig|6666666.229899.peg.1096 CDS CP012959.1 1093336 1094334 1 + 999 Ferric iron ABC transporter, iron-binding protein Iron acquisition in Streptococcus
fig|6666666.229899.peg.1097 CDS CP012959.1 1094415 1095935 3 + 1521 Ferric iron ABC transporter, permease protein Iron acquisition in Streptococcus
fig|6666666.229899.peg.1098 CDS CP012959.1 1095951 1097009 3 + 1059 Ferric iron ABC transporter, ATP-binding protein Iron acquisition in Streptococcus
fig|6666666.229899.peg.1099 CDS CP012959.1 1097998 1097030 -1 - 969 tRNA-dihydrouridine synthase C (EC 1.-.-.-) Murein hydrolase regulation and cell death;
tRNA modification Bacteria
fig|6666666.229899.peg.1100 CDS CP012959.1 1098877 1098002 -1 - 876 DnaJ-like protein DjlA - none -
fig|6666666.229899.peg.1101 CDS CP012959.1 1099603 1098959 -1 - 645 Orotate phosphoribosyltransferase (EC 2.4.2.10) De Novo Pyrimidine Synthesis
fig|6666666.229899.peg.1102 CDS CP012959.1 1100329 1099613 -1 - 717 Ribonuclease PH (EC 2.7.7.56) Heat shock dnaK gene cluster extended;
tRNA processing
fig|6666666.229899.peg.1103 CDS CP012959.1 1100447 1101310 2 + 864 Protein YicC CBSS-323097.3.peg.2594
fig|6666666.229899.peg.1104 CDS CP012959.1 1101338 1102225 2 + 888 Folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress - none -
fig|6666666.229899.peg.1105 CDS CP012959.1 1102302 1102733 3 + 432 Patatin-like phospholipase - none -
fig|6666666.229899.peg.1106 CDS CP012959.1 1102808 1103530 2 + 723 SSU ribosomal protein S2p (SAe) CBSS-312309.3.peg.1965;
Ribosome SSU bacterial;
Ribosome recycling related cluster
fig|6666666.229899.peg.1107 CDS CP012959.1 1103579 1103692 2 + 114 hypothetical protein - none -
fig|6666666.229899.peg.1108 CDS CP012959.1 1103685 1104533 3 + 849 Translation elongation factor Ts CBSS-312309.3.peg.1965;
Ribosome recycling related cluster;
Translation elongation factors bacterial
fig|6666666.229899.peg.1109 CDS CP012959.1 1104841 1105527 1 + 687 DNA recombination and repair protein RecO CBSS-176299.4.peg.1292;
DNA repair, bacterial RecFOR pathway;
Glycyl-tRNA synthetase containing cluster
fig|6666666.229899.peg.1110 CDS CP012959.1 1105529 1106845 2 + 1317 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) RNA methylation
fig|6666666.229899.peg.1111 CDS CP012959.1 1106855 1109086 2 + 2232 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I CBSS-176299.4.peg.1292;
Stringent Response, (p)ppGpp metabolism
fig|6666666.229899.peg.1112 CDS CP012959.1 1109112 1109468 3 + 357 Diacylglycerol kinase (EC 2.7.1.107) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Riboflavin synthesis cluster
fig|6666666.229899.peg.1113 CDS CP012959.1 1109484 1110143 3 + 660 Hydrolase, haloacid dehalogenase-like family - none -
fig|6666666.229899.peg.1114 CDS CP012959.1 1110962 1110162 -2 - 801 Orf2 - none -
fig|6666666.229899.peg.1115 CDS CP012959.1 1114214 1111116 -2 - 3099 RND multidrug efflux transporter; Acriflavin resistance protein Multidrug Resistance Efflux Pumps
fig|6666666.229899.peg.1116 CDS CP012959.1 1115424 1114228 -3 - 1197 Probable Co/Zn/Cd efflux system membrane fusion protein Cobalt-zinc-cadmium resistance
fig|6666666.229899.peg.1117 CDS CP012959.1 1116016 1115450 -1 - 567 Probable Co/Zn/Cd efflux system membrane fusion protein Cobalt-zinc-cadmium resistance
fig|6666666.229899.peg.1118 CDS CP012959.1 1117050 1116217 -3 - 834 Cell division protein - none -
fig|6666666.229899.peg.1119 CDS CP012959.1 1119400 1117160 -1 - 2241 Helicase PriA essential for oriC/DnaA-independent DNA replication Conserved gene cluster associated with Met-tRNA formyltransferase
fig|6666666.229899.peg.1120 CDS CP012959.1 1119585 1120448 3 + 864 Involved in lipopolysaccharide biosynthesis - none -
fig|6666666.229899.peg.1121 CDS CP012959.1 1121459 1120455 -2 - 1005 putative capsular polysaccharide synthesis protein - none -
fig|6666666.229899.peg.1122 CDS CP012959.1 1122316 1121468 -1 - 849 Lipooligosaccharide biosynthesis protein lex-1 (EC 2.-.-.-) - none -
fig|6666666.229899.peg.1123 CDS CP012959.1 1122574 1122786 1 + 213 LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-dependent Ribosome LSU bacterial;
Ribosome LSU bacterial
fig|6666666.229899.peg.1124 CDS CP012959.1 1122849 1123541 3 + 693 Beta-1,4-galactosyltransferase LOS core oligosaccharide biosynthesis
fig|6666666.229899.peg.1125 CDS CP012959.1 1123542 1124564 3 + 1023 COG0859: ADP-heptose:LPS heptosyltransferase - none -
fig|6666666.229899.peg.1126 CDS CP012959.1 1124574 1125626 3 + 1053 COG0859: ADP-heptose:LPS heptosyltransferase - none -
fig|6666666.229899.peg.1127 CDS CP012959.1 1126486 1125629 -1 - 858 Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) DNA Repair Base Excision
fig|6666666.229899.peg.1128 CDS CP012959.1 1126696 1126526 -1 - 171 LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-independent Ribosome LSU bacterial;
Ribosome LSU bacterial
fig|6666666.229899.peg.1129 CDS CP012959.1 1126881 1126708 -3 - 174 LSU ribosomal protein L28p Ribosome LSU bacterial
fig|6666666.229899.peg.1130 CDS CP012959.1 1127790 1127131 -3 - 660 DNA repair protein RadC DNA repair, bacterial
fig|6666666.229899.peg.1131 CDS CP012959.1 1127969 1127841 -2 - 129 hypothetical protein - none -
fig|6666666.229899.peg.1132 CDS CP012959.1 1127968 1129167 1 + 1200 Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) / Phosphopantothenoylcysteine synthetase (EC 6.3.2.5) Coenzyme A Biosynthesis;
Coenzyme A Biosynthesis
fig|6666666.229899.peg.1133 CDS CP012959.1 1129236 1129691 3 + 456 Deoxyuridine 5@1-triphosphate nucleotidohydrolase (EC 3.6.1.23) Housecleaning nucleoside triphosphate pyrophosphatases;
Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229899.peg.1134 CDS CP012959.1 1129691 1130290 2 + 600 Transcriptional regulator SlmA, TetR family - none -
fig|6666666.229899.peg.1135 CDS CP012959.1 1130314 1130532 1 + 219 FIG00696234: hypothetical protein - none -
fig|6666666.229899.peg.1136 CDS CP012959.1 1130570 1131214 2 + 645 Cyclic AMP receptor protein cAMP signaling in bacteria
fig|6666666.229899.peg.1137 CDS CP012959.1 1132717 1131347 -1 - 1371 Glutathione reductase (EC 1.8.1.7) Glutathione: Redox cycle
fig|6666666.229899.peg.1138 CDS CP012959.1 1133657 1132812 -2 - 846 Protein involved in catabolism of external DNA DNA processing cluster;
DNA uptake cluster
fig|6666666.229899.peg.1139 CDS CP012959.1 1136319 1133752 -3 - 2568 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) DNA uptake cluster;
Peptidoglycan Biosynthesis;
Type IV pilus
fig|6666666.229899.peg.1140 CDS CP012959.1 1136453 1137262 2 + 810 Type IV pilus biogenesis protein PilM; Competence protein A DNA uptake cluster;
Type IV pilus
fig|6666666.229899.peg.1141 CDS CP012959.1 1137273 1137791 3 + 519 Type IV pilus biogenesis protein PilN; Competence protein B DNA uptake cluster;
Type IV pilus
fig|6666666.229899.peg.1142 CDS CP012959.1 1137788 1138312 2 + 525 Competence protein C; Chromosome segregation ATPases DNA uptake cluster
fig|6666666.229899.peg.1143 CDS CP012959.1 1138312 1138704 1 + 393 Type IV pilus biogenesis protein PilQ; Competence protein D DNA uptake cluster;
Type IV pilus
fig|6666666.229899.peg.1144 CDS CP012959.1 1138725 1140134 3 + 1410 Type IV pilus biogenesis protein PilQ; Competence protein E DNA uptake cluster;
Type IV pilus
fig|6666666.229899.peg.1145 CDS CP012959.1 1140348 1140875 3 + 528 Shikimate kinase I (EC 2.7.1.71) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229899.peg.1146 CDS CP012959.1 1140899 1141987 2 + 1089 3-dehydroquinate synthase (EC 4.2.3.4) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate);
Type IV pilus
fig|6666666.229899.peg.1147 CDS CP012959.1 1141990 1142844 1 + 855 Methyl-directed repair DNA adenine methylase (EC 2.1.1.72) DNA repair, bacterial
fig|6666666.229899.peg.1148 CDS CP012959.1 1143610 1143083 -1 - 528 probable integral membrane protein NMA1777 - none -
fig|6666666.229899.peg.1149 CDS CP012959.1 1143963 1143661 -3 - 303 probable integral membrane protein NMA1777 - none -
fig|6666666.229899.peg.1150 CDS CP012959.1 1144406 1143963 -2 - 444 Transcriptional regulator, MarR family - none -
fig|6666666.229899.peg.1151 CDS CP012959.1 1144554 1145669 3 + 1116 Membrane fusion protein of RND family multidrug efflux pump Multidrug Resistance Efflux Pumps
fig|6666666.229899.peg.1152 CDS CP012959.1 1146253 1146065 -1 - 189 hypothetical protein - none -
fig|6666666.229899.peg.1153 CDS CP012959.1 1146420 1148591 3 + 2172 Hypothetical SecA-related protein - none -
fig|6666666.229899.peg.1154 CDS CP012959.1 1148805 1149371 3 + 567 RND multidrug efflux transporter; Acriflavin resistance protein Multidrug Resistance Efflux Pumps
fig|6666666.229899.peg.1155 CDS CP012959.1 1150046 1149561 -2 - 486 Single-stranded DNA-binding protein DNA repair, bacterial;
DNA repair, bacterial RecFOR pathway
fig|6666666.229899.peg.1156 CDS CP012959.1 1150216 1153047 1 + 2832 Excinuclease ABC subunit A DNA repair, UvrABC system
fig|6666666.229899.peg.1157 CDS CP012959.1 1153125 1153499 3 + 375 hypothetical protein - none -
fig|6666666.229899.peg.1158 CDS CP012959.1 1153496 1153798 2 + 303 Mobile element protein - none -
fig|6666666.229899.peg.1159 CDS CP012959.1 1153792 1154301 1 + 510 Mobile element protein - none -
fig|6666666.229899.peg.1160 CDS CP012959.1 1154881 1154378 -1 - 504 Mercuric resistance operon regulatory protein - none -
fig|6666666.229899.peg.1161 CDS CP012959.1 1155220 1154909 -1 - 312 Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives DNA replication cluster 1
fig|6666666.229899.peg.1162 CDS CP012959.1 1155312 1155629 3 + 318 hypothetical protein - none -
fig|6666666.229899.peg.1163 CDS CP012959.1 1155639 1158401 3 + 2763 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) - none -
fig|6666666.229899.peg.1164 CDS CP012959.1 1158478 1158882 1 + 405 Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-) Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229899.peg.1165 CDS CP012959.1 1160408 1159374 -2 - 1035 DNA polymerase III delta subunit (EC 2.7.7.7) CBSS-208964.1.peg.3988
fig|6666666.229899.peg.1166 CDS CP012959.1 1160911 1160408 -1 - 504 LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B) CBSS-208964.1.peg.3988;
KDO2-Lipid A biosynthesis;
Lipopolysaccharide assembly
fig|6666666.229899.peg.1167 CDS CP012959.1 1160900 1161028 2 + 129 hypothetical protein - none -
fig|6666666.229899.peg.1168 CDS CP012959.1 1163641 1161053 -1 - 2589 Leucyl-tRNA synthetase (EC 6.1.1.4) CBSS-208964.1.peg.3988;
tRNA aminoacylation, Leu
fig|6666666.229899.peg.1169 CDS CP012959.1 1163789 1163619 -2 - 171 hypothetical protein - none -
fig|6666666.229899.peg.1170 CDS CP012959.1 1163877 1163761 -3 - 117 hypothetical protein - none -
fig|6666666.229899.peg.1171 CDS CP012959.1 1164389 1163832 -2 - 558 FIG00696423: hypothetical protein - none -
fig|6666666.229899.peg.1172 CDS CP012959.1 1164710 1164417 -2 - 294 nucleotidyltransferase - none -
fig|6666666.229899.peg.1173 CDS CP012959.1 1165113 1164694 -3 - 420 nucleotidyltransferase substrate binding protein, HI0074 family - none -
fig|6666666.229899.peg.1174 CDS CP012959.1 1166031 1165204 -3 - 828 Bis(5@1-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) - none -
fig|6666666.229899.peg.1175 CDS CP012959.1 1166910 1166047 -3 - 864 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase (EC 2.1.1.182) RNA methylation;
Ribosome biogenesis bacterial
fig|6666666.229899.peg.1176 CDS CP012959.1 1167920 1166988 -2 - 933 Survival protein SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA) (EC 5.2.1.8) Lipopolysaccharide assembly;
Peptidyl-prolyl cis-trans isomerase;
Periplasmic Stress Response
fig|6666666.229899.peg.1177 CDS CP012959.1 1168523 1167987 -2 - 537 Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR De Novo Pyrimidine Synthesis;
De Novo Pyrimidine Synthesis;
pyrimidine conversions
fig|6666666.229899.peg.1178 CDS CP012959.1 1169072 1168662 -2 - 411 Copper metallochaperone, bacterial analog of Cox17 protein Biogenesis of cytochrome c oxidases
fig|6666666.229899.peg.1179 CDS CP012959.1 1169185 1169796 1 + 612 FIG002903: a protein of unknown function perhaps involved in purine metabolism CBSS-354.1.peg.876
fig|6666666.229899.peg.1180 CDS CP012959.1 1169820 1171187 3 + 1368 Adenylosuccinate lyase (EC 4.3.2.2) CBSS-354.1.peg.876;
Purine conversions
fig|6666666.229899.peg.1181 CDS CP012959.1 1171409 1172158 2 + 750 Sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140) - none -
fig|6666666.229899.peg.1182 CDS CP012959.1 1172679 1172272 -3 - 408 Transcriptional regulator, MerR family Cobalt-zinc-cadmium resistance
fig|6666666.229899.peg.1183 CDS CP012959.1 1172817 1173941 3 + 1125 S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) Glutathione-dependent pathway of formaldehyde detoxification
fig|6666666.229899.peg.1184 CDS CP012959.1 1173954 1174784 3 + 831 S-formylglutathione hydrolase (EC 3.1.2.12) Glutathione-dependent pathway of formaldehyde detoxification
fig|6666666.229899.peg.1185 CDS CP012959.1 1175137 1175256 1 + 120 hypothetical protein - none -
fig|6666666.229899.peg.1186 CDS CP012959.1 1176803 1175424 -2 - 1380 Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1) Bacterial signal recognition particle (SRP);
Universal GTPases
fig|6666666.229899.peg.1187 CDS CP012959.1 1176957 1177751 3 + 795 FIG001154: CcsA-related protein - none -
fig|6666666.229899.peg.1188 CDS CP012959.1 1177826 1179088 2 + 1263 Magnesium and cobalt efflux protein CorC CBSS-56780.10.peg.1536;
Copper homeostasis: copper tolerance;
Glycyl-tRNA synthetase containing cluster;
Magnesium transport;
tRNA-methylthiotransferase containing cluster
fig|6666666.229899.peg.1189 CDS CP012959.1 1179263 1179733 2 + 471 Ferric siderophore transport system, biopolymer transport protein ExbB Ton and Tol transport systems
fig|6666666.229899.peg.1190 CDS CP012959.1 1179737 1180183 2 + 447 Biopolymer transport protein ExbD/TolR Ton and Tol transport systems
fig|6666666.229899.peg.1191 CDS CP012959.1 1180193 1180951 2 + 759 Ferric siderophore transport system, periplasmic binding protein TonB Hemin transport system;
Ton and Tol transport systems
fig|6666666.229899.peg.1192 CDS CP012959.1 1181812 1181039 -1 - 774 Zn-dependent protease with chaperone function - none -
fig|6666666.229899.peg.1193 CDS CP012959.1 1182415 1181888 -1 - 528 Inorganic pyrophosphatase (EC 3.6.1.1) Phosphate metabolism
fig|6666666.229899.peg.1194 CDS CP012959.1 1182577 1183821 1 + 1245 Tryptophan-specific transport protein - none -
fig|6666666.229899.peg.1195 CDS CP012959.1 1183845 1184162 3 + 318 hypothetical protein - none -
fig|6666666.229899.peg.1196 CDS CP012959.1 1184146 1184415 1 + 270 hypothetical protein - none -
fig|6666666.229899.peg.1197 CDS CP012959.1 1185504 1184797 -3 - 708 NMN phosphatase (EC 3.1.3.5); Class B acid phosphatase precursor (EC 3.1.3.2) NAD and NADP cofactor biosynthesis global
fig|6666666.229899.peg.1198 CDS CP012959.1 1185719 1186246 2 + 528 ATP-dependent protease HslV (EC 3.4.25.-) Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229899.peg.1199 CDS CP012959.1 1186267 1187598 1 + 1332 ATP-dependent hsl protease ATP-binding subunit HslU Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229899.peg.1200 CDS CP012959.1 1187664 1189247 3 + 1584 Nickel ABC transporter, periplasmic nickel-binding protein NikA (TC 3.A.1.5.3) Transport of Nickel and Cobalt
fig|6666666.229899.peg.1201 CDS CP012959.1 1189346 1190089 2 + 744 Nucleoside ABC transporter, periplasmic nucleoside-binding protein - none -
fig|6666666.229899.peg.1202 CDS CP012959.1 1190107 1190601 1 + 495 Protein yfbU - none -
fig|6666666.229899.peg.1203 CDS CP012959.1 1190676 1190563 -3 - 114 hypothetical protein - none -
fig|6666666.229899.peg.1204 CDS CP012959.1 1191046 1191216 1 + 171 hypothetical protein - none -
fig|6666666.229899.peg.1205 CDS CP012959.1 1191213 1193435 3 + 2223 VgrG-3 protein - none -
fig|6666666.229899.peg.1206 CDS CP012959.1 1193439 1194578 3 + 1140 Probable phospholipase protein - none -
fig|6666666.229899.peg.1207 CDS CP012959.1 1194575 1195642 2 + 1068 Probable phospholipase protein - none -
fig|6666666.229899.peg.1208 CDS CP012959.1 1195738 1196796 1 + 1059 hypothetical protein - none -
fig|6666666.229899.peg.1209 CDS CP012959.1 1197108 1197239 3 + 132 hypothetical protein - none -
fig|6666666.229899.peg.1210 CDS CP012959.1 1198075 1197590 -1 - 486 Dihydrofolate reductase (EC 1.5.1.3) 5-FCL-like protein;
Folate Biosynthesis
fig|6666666.229899.peg.1211 CDS CP012959.1 1198579 1198115 -1 - 465 FIG001826: putative inner membrane protein CBSS-316275.9.peg.382
fig|6666666.229899.peg.1212 CDS CP012959.1 1199366 1198581 -2 - 786 FIG023911: putative membrane protein CBSS-316275.9.peg.382
fig|6666666.229899.peg.1213 CDS CP012959.1 1199517 1199696 3 + 180 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA Proline Synthesis;
Proline Synthesis
fig|6666666.229899.peg.1214 CDS CP012959.1 1199677 1200336 1 + 660 Glutamate 5-kinase (EC 2.7.2.11) Proline Synthesis
fig|6666666.229899.peg.1215 CDS CP012959.1 1201033 1200401 -1 - 633 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase
fig|6666666.229899.peg.1216 CDS CP012959.1 1201928 1201059 -2 - 870 Phosphatidylserine decarboxylase (EC 4.1.1.65) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229899.peg.1217 CDS CP012959.1 1202151 1203440 3 + 1290 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229899.peg.1218 CDS CP012959.1 1203433 1204608 1 + 1176 8-amino-7-oxononanoate synthase (EC 2.3.1.47) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229899.peg.1219 CDS CP012959.1 1204589 1205239 2 + 651 Biotin synthesis protein BioG Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229899.peg.1220 CDS CP012959.1 1205257 1205997 1 + 741 Biotin synthesis protein BioC Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229899.peg.1221 CDS CP012959.1 1205997 1206638 3 + 642 Dethiobiotin synthetase (EC 6.3.3.3) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229899.peg.1222 CDS CP012959.1 1206710 1207234 2 + 525 COG1399 protein, clustered with ribosomal protein L32p - none -
fig|6666666.229899.peg.1223 CDS CP012959.1 1207251 1207421 3 + 171 LSU ribosomal protein L32p Ribosome LSU bacterial
fig|6666666.229899.peg.1224 CDS CP012959.1 1207448 1208467 2 + 1020 Phosphate:acyl-ACP acyltransferase PlsX Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229899.peg.1225 CDS CP012959.1 1208514 1209464 3 + 951 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) Fatty Acid Biosynthesis FASII
fig|6666666.229899.peg.1226 CDS CP012959.1 1209571 1210509 1 + 939 Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39) Fatty Acid Biosynthesis FASII
fig|6666666.229899.peg.1227 CDS CP012959.1 1210534 1211262 1 + 729 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) Fatty Acid Biosynthesis FASII
fig|6666666.229899.peg.1228 CDS CP012959.1 1211535 1211765 3 + 231 Acyl carrier protein Fatty Acid Biosynthesis FASII;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229899.peg.1229 CDS CP012959.1 1211914 1211774 -1 - 141 hypothetical protein - none -
fig|6666666.229899.peg.1230 CDS CP012959.1 1211994 1213229 3 + 1236 Major facilitator superfamily (MFS) transport protein - none -
fig|6666666.229899.peg.1231 CDS CP012959.1 1214592 1213354 -3 - 1239 Transcription termination factor Rho Transcription factors bacterial
fig|6666666.229899.peg.1232 CDS CP012959.1 1214917 1216173 1 + 1257 ATP-dependent RNA helicase RhlB - none -
fig|6666666.229899.peg.1233 CDS CP012959.1 1216240 1216548 1 + 309 Iojap protein - none -
fig|6666666.229899.peg.1234 CDS CP012959.1 1216539 1217075 3 + 537 LSU m3Psi1915 methyltransferase RlmH RNA methylation;
Ribosome biogenesis bacterial;
tRNA modification Bacteria
fig|6666666.229899.peg.1235 CDS CP012959.1 1217088 1219049 3 + 1962 Penicillin-binding protein 2 (PBP-2) 16S rRNA modification within P site of ribosome;
CBSS-83331.1.peg.3039;
Peptidoglycan Biosynthesis
fig|6666666.229899.peg.1236 CDS CP012959.1 1219036 1220157 1 + 1122 Rod shape-determining protein RodA Bacterial Cytoskeleton;
Peptidoglycan Biosynthesis
fig|6666666.229899.peg.1237 CDS CP012959.1 1220206 1221063 1 + 858 Rare lipoprotein A precursor Peptidoglycan Biosynthesis
fig|6666666.229899.peg.1238 CDS CP012959.1 1221094 1222284 1 + 1191 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) Metallocarboxypeptidases (EC 3.4.17.-);
Murein Hydrolases;
Peptidoglycan Biosynthesis
fig|6666666.229899.peg.1239 CDS CP012959.1 1222334 1222633 2 + 300 Proposed lipoate regulatory protein YbeD Lipoic acid metabolism;
Lipoic acid synthesis cluster
fig|6666666.229899.peg.1240 CDS CP012959.1 1222679 1223317 2 + 639 Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase Lipoic acid metabolism;
Lipoic acid synthesis cluster
fig|6666666.229899.peg.1241 CDS CP012959.1 1223382 1224344 3 + 963 Lipoate synthase Lipoic acid metabolism;
Lipoic acid synthesis cluster
fig|6666666.229899.peg.1242 CDS CP012959.1 1224771 1224553 -3 - 219 hypothetical protein - none -
fig|6666666.229899.peg.1243 CDS CP012959.1 1224965 1225087 2 + 123 hypothetical protein - none -
fig|6666666.229899.peg.1244 CDS CP012959.1 1225134 1226498 3 + 1365 lipoprotein, putative - none -
fig|6666666.229899.peg.1245 CDS CP012959.1 1226624 1227919 2 + 1296 Glycine/D-amino acid oxidases (deaminating) - none -
fig|6666666.229899.peg.1246 CDS CP012959.1 1228045 1228824 1 + 780 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain - none -
fig|6666666.229899.peg.1247 CDS CP012959.1 1228808 1229530 2 + 723 L-Cystine ABC transporter, permease protein TcyB - none -
fig|6666666.229899.peg.1248 CDS CP012959.1 1229540 1230307 2 + 768 ABC-type polar amino acid transport system, ATPase component CBSS-326442.4.peg.1852
fig|6666666.229899.peg.1249 CDS CP012959.1 1230602 1230312 -2 - 291 tRNA 5-methylaminomethyl-2-thiouridine synthase TusB Sulfite reduction-associated complex DsrMKJOP and co-clustering genes;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.229899.peg.1250 CDS CP012959.1 1230964 1230602 -1 - 363 tRNA 5-methylaminomethyl-2-thiouridine synthase TusC CBSS-326442.4.peg.1852;
Sulfite reduction-associated complex DsrMKJOP and co-clustering genes;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.229899.peg.1251 CDS CP012959.1 1231338 1230961 -3 - 378 tRNA 5-methylaminomethyl-2-thiouridine synthase TusD CBSS-326442.4.peg.1852;
Sulfite reduction-associated complex DsrMKJOP and co-clustering genes;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.229899.peg.1252 CDS CP012959.1 1232010 1231342 -3 - 669 YheO-like PAS domain - none -
fig|6666666.229899.peg.1253 CDS CP012959.1 1232815 1232090 -1 - 726 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase;
Potassium homeostasis
fig|6666666.229899.peg.1254 CDS CP012959.1 1232910 1233125 3 + 216 Protein SlyX - none -
fig|6666666.229899.peg.1255 CDS CP012959.1 1233914 1233186 -2 - 729 Peroxiredoxin family protein/glutaredoxin - none -
fig|6666666.229899.peg.1256 CDS CP012959.1 1234073 1234972 2 + 900 Hydrogen peroxide-inducible genes activator LysR-family proteins in Escherichia coli;
LysR-family proteins in Salmonella enterica Typhimurium;
Oxidative stress;
Thioredoxin-disulfide reductase
fig|6666666.229899.peg.1257 CDS CP012959.1 1234984 1235604 1 + 621 Unsaturated fatty acid biosythesis repressor FabR, TetR family - none -
fig|6666666.229899.peg.1258 CDS CP012959.1 1237349 1235715 -2 - 1635 ABC transporter ATP-binding protein - none -
fig|6666666.229899.peg.1259 CDS CP012959.1 1239114 1237366 -3 - 1749 Transport ATP-binding protein CydD Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229899.peg.1260 CDS CP012959.1 1240606 1239284 -1 - 1323 Anaerobic C4-dicarboxylate membrane transporter DcuA - none -
fig|6666666.229899.peg.1261 CDS CP012959.1 1240867 1241373 1 + 507 FIG136845: Rhodanese-related sulfurtransferase Glutaredoxin 3 containing cluster
fig|6666666.229899.peg.1262 CDS CP012959.1 1241389 1241901 1 + 513 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) Glutaredoxin 3 containing cluster
fig|6666666.229899.peg.1263 CDS CP012959.1 1241979 1242992 3 + 1014 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) Glutaredoxin 3 containing cluster;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229899.peg.1264 CDS CP012959.1 1242995 1243792 2 + 798 Serine acetyltransferase (EC 2.3.1.30) Cysteine Biosynthesis;
Methionine Biosynthesis
fig|6666666.229899.peg.1265 CDS CP012959.1 1243971 1243840 -3 - 132 hypothetical protein - none -
fig|6666666.229899.peg.1266 CDS CP012959.1 1243992 1244396 3 + 405 hypothetical protein - none -
fig|6666666.229899.peg.1267 CDS CP012959.1 1245447 1244434 -3 - 1014 Fructose-1,6-bisphosphatase, GlpX type (EC 3.1.3.11) Glycolysis and Gluconeogenesis
fig|6666666.229899.peg.1268 CDS CP012959.1 1245643 1245861 1 + 219 FIG074102: hypothetical protein - none -
fig|6666666.229899.peg.1269 CDS CP012959.1 1245918 1246361 3 + 444 Flavoprotein MioC Flavodoxin
fig|6666666.229899.peg.1270 CDS CP012959.1 1246790 1248679 2 + 1890 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA Cell Division Subsystem including YidCD;
RNA modification and chromosome partitioning cluster;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229899.peg.1271 CDS CP012959.1 1248797 1248681 -2 - 117 hypothetical protein - none -
fig|6666666.229899.peg.1272 CDS CP012959.1 1249652 1248951 -2 - 702 NADPH:quinone oxidoreductase 2 NADPH:quinone oxidoreductase 2
fig|6666666.229899.peg.1273 CDS CP012959.1 1249807 1249637 -1 - 171 NADPH:quinone oxidoreductase 2 NADPH:quinone oxidoreductase 2
fig|6666666.229899.peg.1274 CDS CP012959.1 1249851 1250321 3 + 471 Redox-sensing transcriptional regulator QorR NADPH:quinone oxidoreductase 2
fig|6666666.229899.peg.1275 CDS CP012959.1 1250314 1250997 1 + 684 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB Cell Division Subsystem including YidCD;
RNA methylation;
RNA modification and chromosome partitioning cluster
fig|6666666.229899.peg.1276 CDS CP012959.1 1251109 1251486 1 + 378 FIG048548: ATP synthase protein I2 F0F1-type ATP synthase
fig|6666666.229899.peg.1277 CDS CP012959.1 1251511 1252299 1 + 789 ATP synthase F0 sector subunit a - none -
fig|6666666.229899.peg.1278 CDS CP012959.1 1252351 1252605 1 + 255 ATP synthase F0 sector subunit c (EC 3.6.3.14) F0F1-type ATP synthase
fig|6666666.229899.peg.1279 CDS CP012959.1 1252718 1253125 2 + 408 ATP synthase F0 sector subunit b (EC 3.6.3.14) F0F1-type ATP synthase
fig|6666666.229899.peg.1280 CDS CP012959.1 1253139 1253687 3 + 549 ATP synthase delta chain (EC 3.6.3.14) F0F1-type ATP synthase
fig|6666666.229899.peg.1281 CDS CP012959.1 1253700 1255241 3 + 1542 ATP synthase alpha chain (EC 3.6.3.14) F0F1-type ATP synthase
fig|6666666.229899.peg.1282 CDS CP012959.1 1255257 1256126 3 + 870 ATP synthase gamma chain (EC 3.6.3.14) F0F1-type ATP synthase
fig|6666666.229899.peg.1283 CDS CP012959.1 1256143 1257516 1 + 1374 ATP synthase beta chain (EC 3.6.3.14) F0F1-type ATP synthase
fig|6666666.229899.peg.1284 CDS CP012959.1 1257558 1257986 3 + 429 ATP synthase epsilon chain (EC 3.6.3.14) F0F1-type ATP synthase
fig|6666666.229899.peg.1285 CDS CP012959.1 1259093 1258047 -2 - 1047 ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1) Polyamine Metabolism
fig|6666666.229899.peg.1286 CDS CP012959.1 1260172 1259258 -1 - 915 N-acetylmuramic acid 6-phosphate etherase - none -
fig|6666666.229899.peg.1287 CDS CP012959.1 1261299 1260169 -3 - 1131 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) Recycling of Peptidoglycan Amino Sugars
fig|6666666.229899.peg.1288 CDS CP012959.1 1261385 1262755 2 + 1371 N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23) / Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157) Peptidoglycan Biosynthesis;
Peptidoglycan Biosynthesis;
Sialic Acid Metabolism;
Sialic Acid Metabolism;
Transcription repair cluster;
Transcription repair cluster;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229899.peg.1289 CDS CP012959.1 1263978 1262887 -3 - 1092 Putative exported protein precursor - none -
fig|6666666.229899.peg.1290 CDS CP012959.1 1264865 1264116 -2 - 750 Deoxyribose operon repressor, DeoR family Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.229899.peg.1291 CDS CP012959.1 1265564 1264893 -2 - 672 Deoxyribose-phosphate aldolase (EC 4.1.2.4) Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.229899.peg.1292 CDS CP012959.1 1265870 1267072 2 + 1203 hypothetical protein - none -
fig|6666666.229899.peg.1293 CDS CP012959.1 1267114 1267449 1 + 336 hypothetical protein - none -
fig|6666666.229899.peg.1294 CDS CP012959.1 1267546 1269639 1 + 2094 hypothetical protein - none -
fig|6666666.229899.peg.1295 CDS CP012959.1 1269680 1269838 2 + 159 hypothetical protein - none -
fig|6666666.229899.peg.1296 CDS CP012959.1 1270268 1270924 2 + 657 VgrG-3 protein - none -
fig|6666666.229899.peg.1297 CDS CP012959.1 1270928 1272073 2 + 1146 VgrG-3 protein - none -
fig|6666666.229899.peg.1298 CDS CP012959.1 1272236 1273648 2 + 1413 hypothetical protein - none -
fig|6666666.229899.peg.1299 CDS CP012959.1 1273686 1276604 3 + 2919 hypothetical protein - none -
fig|6666666.229899.peg.1300 CDS CP012959.1 1276608 1277189 3 + 582 hypothetical protein - none -
fig|6666666.229899.peg.1301 CDS CP012959.1 1277220 1277783 3 + 564 hypothetical protein - none -
fig|6666666.229899.peg.1302 CDS CP012959.1 1277905 1278033 1 + 129 hypothetical protein - none -
fig|6666666.229899.peg.1303 CDS CP012959.1 1278037 1278186 1 + 150 hypothetical protein - none -
fig|6666666.229899.peg.1304 CDS CP012959.1 1278548 1278874 2 + 327 hypothetical protein - none -
fig|6666666.229899.peg.1305 CDS CP012959.1 1279059 1278901 -3 - 159 hypothetical protein - none -
fig|6666666.229899.peg.1306 CDS CP012959.1 1279222 1280460 1 + 1239 hypothetical protein - none -
fig|6666666.229899.peg.1307 CDS CP012959.1 1280412 1283216 3 + 2805 hypothetical protein - none -
fig|6666666.229899.peg.1308 CDS CP012959.1 1283256 1284086 3 + 831 hypothetical protein - none -
fig|6666666.229899.peg.1309 CDS CP012959.1 1284232 1284354 1 + 123 hypothetical protein - none -
fig|6666666.229899.peg.1310 CDS CP012959.1 1284658 1285209 1 + 552 hypothetical protein - none -
fig|6666666.229899.peg.1311 CDS CP012959.1 1285254 1285391 3 + 138 hypothetical protein - none -
fig|6666666.229899.peg.1312 CDS CP012959.1 1285665 1285471 -3 - 195 hypothetical protein - none -
fig|6666666.229899.peg.1313 CDS CP012959.1 1287919 1288041 1 + 123 hypothetical protein - none -
fig|6666666.229899.peg.1314 CDS CP012959.1 1288610 1289467 2 + 858 Methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5) / Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9) 5-FCL-like protein;
One-carbon metabolism by tetrahydropterines;
One-carbon metabolism by tetrahydropterines;
Serine-glyoxylate cycle;
Serine-glyoxylate cycle
fig|6666666.229899.peg.1315 CDS CP012959.1 1291190 1289556 -2 - 1635 Heat shock protein 60 family chaperone GroEL GroEL GroES
fig|6666666.229899.peg.1316 CDS CP012959.1 1291600 1291310 -1 - 291 Heat shock protein 60 family co-chaperone GroES GroEL GroES
fig|6666666.229899.peg.1317 CDS CP012959.1 1292169 1291687 -3 - 483 FxsA protein - none -
fig|6666666.229899.peg.1318 CDS CP012959.1 1292399 1293817 2 + 1419 Aspartate ammonia-lyase (EC 4.3.1.1) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229899.peg.1319 CDS CP012959.1 1293998 1295035 2 + 1038 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) LOS core oligosaccharide biosynthesis
fig|6666666.229899.peg.1320 CDS CP012959.1 1296540 1295704 -3 - 837 PTS system, mannose-specific IID component (EC 2.7.1.69) Mannose Metabolism;
Sialic Acid Metabolism
fig|6666666.229899.peg.1321 CDS CP012959.1 1297359 1296556 -3 - 804 PTS system, mannose-specific IIC component (EC 2.7.1.69) Mannose Metabolism;
Sialic Acid Metabolism
fig|6666666.229899.peg.1322 CDS CP012959.1 1298369 1297371 -2 - 999 PTS system, mannose-specific IIA component (EC 2.7.1.69) / PTS system, mannose-specific IIB component (EC 2.7.1.69) Mannose Metabolism;
Mannose Metabolism;
Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229899.peg.1323 CDS CP012959.1 1298686 1300110 1 + 1425 Permeases of the major facilitator superfamily - none -
fig|6666666.229899.peg.1324 CDS CP012959.1 1300305 1301708 3 + 1404 Mannose-1-phosphate guanylyltransferase (GDP) (EC 2.7.7.22) Mannose Metabolism
fig|6666666.229899.peg.1325 CDS CP012959.1 1301732 1302523 2 + 792 O-antigen export system permease protein RfbD - none -
fig|6666666.229899.peg.1326 CDS CP012959.1 1302520 1303272 1 + 753 Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40) - none -
fig|6666666.229899.peg.1327 CDS CP012959.1 1303320 1306253 3 + 2934 Possible glycosyltransferase WbpX (EC 2.4.1.-) - none -
fig|6666666.229899.peg.1328 CDS CP012959.1 1306266 1307150 3 + 885 UDP-glucose 4-epimerase (EC 5.1.3.2) Lactose and Galactose Uptake and Utilization
fig|6666666.229899.peg.1329 CDS CP012959.1 1307152 1308345 1 + 1194 hypothetical protein - none -
fig|6666666.229899.peg.1330 CDS CP012959.1 1308378 1309412 3 + 1035 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) Capsular heptose biosynthesis
fig|6666666.229899.peg.1331 CDS CP012959.1 1309501 1310673 1 + 1173 glycosyl transferase, group 1 family protein - none -
fig|6666666.229899.peg.1332 CDS CP012959.1 1310675 1311766 2 + 1092 Glycosyltransferase - none -
fig|6666666.229899.peg.1333 CDS CP012959.1 1311777 1313195 3 + 1419 Undecaprenyl-phosphate galactosephosphotransferase (EC 2.7.8.6) - none -
fig|6666666.229899.peg.1334 CDS CP012959.1 1314416 1313241 -2 - 1176 Xylose activator XylR (AraC family) Xylose utilization
fig|6666666.229899.peg.1335 CDS CP012959.1 1314405 1314527 3 + 123 hypothetical protein - none -
fig|6666666.229899.peg.1336 CDS CP012959.1 1315877 1314531 -2 - 1347 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229899.peg.1337 CDS CP012959.1 1317126 1315930 -3 - 1197 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229899.peg.1338 CDS CP012959.1 1318342 1317215 -1 - 1128 Xylose ABC transporter, permease protein XylH Xylose utilization
fig|6666666.229899.peg.1339 CDS CP012959.1 1319857 1318346 -1 - 1512 D-xylose transport ATP-binding protein XylG Xylose utilization
fig|6666666.229899.peg.1340 CDS CP012959.1 1320915 1319917 -3 - 999 Xylose ABC transporter, periplasmic xylose-binding protein XylF Xylose utilization
fig|6666666.229899.peg.1341 CDS CP012959.1 1321173 1322492 3 + 1320 Xylose isomerase (EC 5.3.1.5) Xylose utilization
fig|6666666.229899.peg.1342 CDS CP012959.1 1322542 1323519 1 + 978 Xylulose kinase (EC 2.7.1.17) Xylose utilization
fig|6666666.229899.peg.1343 CDS CP012959.1 1323541 1324014 1 + 474 Xylulose kinase (EC 2.7.1.17) Xylose utilization
fig|6666666.229899.peg.1344 CDS CP012959.1 1324699 1324896 1 + 198 hypothetical protein - none -
fig|6666666.229899.peg.1345 CDS CP012959.1 1325485 1326120 1 + 636 DNA transformation protein TfoX CBSS-83333.1.peg.946;
Orphan regulatory proteins
fig|6666666.229899.peg.1346 CDS CP012959.1 1327035 1326187 -3 - 849 RNA polymerase sigma factor RpoH Heat shock dnaK gene cluster extended;
Transcription initiation, bacterial sigma factors
fig|6666666.229899.peg.1347 CDS CP012959.1 1327345 1327220 -1 - 126 Uncharacterized protein conserved in bacteria - none -
fig|6666666.229899.peg.1348 CDS CP012959.1 1327534 1327403 -1 - 132 Uncharacterized protein conserved in bacteria - none -
fig|6666666.229899.peg.1349 CDS CP012959.1 1328575 1327550 -1 - 1026 UDP-N-acetylenolpyruvoylglucosamine reductase (EC 1.1.1.158) Peptidoglycan Biosynthesis;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229899.peg.1350 CDS CP012959.1 1330293 1328590 -3 - 1704 Nitrate/nitrite sensor protein (EC 2.7.3.-) Nitrate and nitrite ammonification
fig|6666666.229899.peg.1351 CDS CP012959.1 1330339 1330503 1 + 165 hypothetical protein - none -
fig|6666666.229899.peg.1352 CDS CP012959.1 1330569 1330853 3 + 285 periplasmic diheme c-type cytochrome, NapB Nitrate and nitrite ammonification
fig|6666666.229899.peg.1353 CDS CP012959.1 1330887 1333373 3 + 2487 Periplasmic nitrate reductase precursor (EC 1.7.99.4) Nitrate and nitrite ammonification
fig|6666666.229899.peg.1354 CDS CP012959.1 1333400 1334260 2 + 861 Ferredoxin-type protein NapG (periplasmic nitrate reductase) Nitrate and nitrite ammonification
fig|6666666.229899.peg.1355 CDS CP012959.1 1334260 1335141 1 + 882 Polyferredoxin NapH (periplasmic nitrate reductase) Nitrate and nitrite ammonification
fig|6666666.229899.peg.1356 CDS CP012959.1 1335179 1335628 2 + 450 Nitrate reductase cytochrome c550-type subunit Nitrate and nitrite ammonification
fig|6666666.229899.peg.1357 CDS CP012959.1 1335642 1336277 3 + 636 Cytochrome c-type protein NapC Nitrate and nitrite ammonification
fig|6666666.229899.peg.1358 CDS CP012959.1 1338267 1336372 -3 - 1896 Glutathionylspermidine synthase (EC 6.3.1.8) / Glutathionylspermidine amidohydrolase (EC 3.5.1.78) Glutathionylspermidine and Trypanothione;
Glutathionylspermidine and Trypanothione
fig|6666666.229899.peg.1359 CDS CP012959.1 1339428 1338385 -3 - 1044 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) LOS core oligosaccharide biosynthesis
fig|6666666.229899.peg.1360 CDS CP012959.1 1340575 1339448 -1 - 1128 Fic family protein - none -
fig|6666666.229899.peg.1361 CDS CP012959.1 1341671 1340745 -2 - 927 ADP-L-glycero-D-manno-heptose-6-epimerase (EC 5.1.3.20) LOS core oligosaccharide biosynthesis
fig|6666666.229899.peg.1362 CDS CP012959.1 1341693 1341812 3 + 120 hypothetical protein - none -
fig|6666666.229899.peg.1363 CDS CP012959.1 1341950 1342726 2 + 777 Protein HI0205 precursor - none -
fig|6666666.229899.peg.1364 CDS CP012959.1 1342753 1344567 1 + 1815 5@1-nucleotidase (EC 3.1.3.5); NAD pyrophosphatase, periplasmic (EC 3.6.1.22) Purine conversions;
pyrimidine conversions
fig|6666666.229899.peg.1365 CDS CP012959.1 1345823 1344954 -2 - 870 hypothetical protein - none -
fig|6666666.229899.peg.1366 CDS CP012959.1 1348441 1346150 -1 - 2292 hypothetical protein - none -
fig|6666666.229899.peg.1367 CDS CP012959.1 1349055 1348423 -3 - 633 hypothetical protein - none -
fig|6666666.229899.peg.1368 CDS CP012959.1 1350460 1349066 -1 - 1395 hypothetical protein - none -
fig|6666666.229899.peg.1369 CDS CP012959.1 1352098 1350854 -1 - 1245 FIG138576: 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229899.peg.1370 CDS CP012959.1 1352857 1352129 -1 - 729 3-oxoacyl-[ACP] reductase (EC 1.1.1.100) Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229899.peg.1371 CDS CP012959.1 1353350 1352907 -2 - 444 3-hydroxydecanoyl-[ACP] dehydratase (EC 4.2.1.60) Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229899.peg.1372 CDS CP012959.1 1354566 1353343 -3 - 1224 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) FabV like Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229899.peg.1373 CDS CP012959.1 1355054 1354575 -2 - 480 FIG085779: Lipoprotein Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229899.peg.1374 CDS CP012959.1 1357457 1355184 -2 - 2274 FIG021862: membrane protein, exporter Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229899.peg.1375 CDS CP012959.1 1358048 1357464 -2 - 585 FIG027190: Putative transmembrane protein Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229899.peg.1376 CDS CP012959.1 1358491 1358045 -1 - 447 FIG002571: 4-hydroxybenzoyl-CoA thioesterase domain protein Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229899.peg.1377 CDS CP012959.1 1359414 1358488 -3 - 927 Lysophospholipid acyltransferase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229899.peg.1378 CDS CP012959.1 1360133 1359411 -2 - 723 FIG143263: Glycosyl transferase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229899.peg.1379 CDS CP012959.1 1361494 1360133 -1 - 1362 FIGfam138462: Acyl-CoA synthetase, AMP-(fatty) acid ligase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229899.peg.1380 CDS CP012959.1 1362036 1361491 -3 - 546 FIG017861: hypothetical protein Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229899.peg.1381 CDS CP012959.1 1363729 1362062 -1 - 1668 FIGfam138462: Acyl-CoA synthetase, AMP-(fatty) acid ligase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229899.peg.1382 CDS CP012959.1 1363980 1363729 -3 - 252 Acyl carrier protein (ACP2) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229899.peg.1383 CDS CP012959.1 1364246 1363983 -2 - 264 Acyl carrier protein (ACP1) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229899.peg.1384 CDS CP012959.1 1365012 1364224 -3 - 789 FIG018329: 1-acyl-sn-glycerol-3-phosphate acyltransferase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229899.peg.1385 CDS CP012959.1 1365740 1364997 -2 - 744 3-oxoacyl-[ACP] synthase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229899.peg.1386 CDS CP012959.1 1366121 1366546 2 + 426 Excinuclease ATPase subunit - none -
fig|6666666.229899.peg.1387 CDS CP012959.1 1367361 1366648 -3 - 714 Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5@1-phosphoribitylamino)uracil phosphatase Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants
fig|6666666.229899.peg.1388 CDS CP012959.1 1368266 1367376 -2 - 891 Tyrosine recombinase XerC - none -
fig|6666666.229899.peg.1389 CDS CP012959.1 1369100 1368276 -2 - 825 Diaminopimelate epimerase (EC 5.1.1.7) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229899.peg.1390 CDS CP012959.1 1369358 1369179 -2 - 180 hypothetical protein - none -
fig|6666666.229899.peg.1391 CDS CP012959.1 1370386 1369358 -1 - 1029 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) - none -
fig|6666666.229899.peg.1392 CDS CP012959.1 1370569 1371069 1 + 501 hypothetical protein - none -
fig|6666666.229899.peg.1393 CDS CP012959.1 1371042 1371191 3 + 150 hypothetical protein - none -
fig|6666666.229899.peg.1394 CDS CP012959.1 1373740 1371170 -1 - 2571 ClpB protein Protein chaperones;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229899.peg.1395 CDS CP012959.1 1374005 1374586 2 + 582 Late competence protein ComEA, DNA receptor - none -
fig|6666666.229899.peg.1396 CDS CP012959.1 1375772 1374660 -2 - 1113 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch;
Threonine and Homoserine Biosynthesis
fig|6666666.229899.peg.1397 CDS CP012959.1 1376768 1375956 -2 - 813 HMP-PP hydrolase (pyridoxal phosphatase) Cof, detected in genetic screen for thiamin metabolic genes (PMID:15292217) - none -
fig|6666666.229899.peg.1398 CDS CP012959.1 1376914 1377600 1 + 687 Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy Biotin biosynthesis Experimental;
Biotin synthesis cluster;
CBSS-216591.1.peg.168
fig|6666666.229899.peg.1399 CDS CP012959.1 1377712 1378296 1 + 585 NfuA Fe-S protein maturation Biotin biosynthesis Experimental;
DNA uptake cluster
fig|6666666.229899.peg.1400 CDS CP012959.1 1378683 1378483 -3 - 201 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) / Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) Riboflavin synthesis cluster
fig|6666666.229899.peg.1401 CDS CP012959.1 1380208 1378793 -1 - 1416 Branched-chain amino acid transport system carrier protein - none -
fig|6666666.229899.peg.1402 CDS CP012959.1 1380322 1381956 1 + 1635 CTP synthase (EC 6.3.4.2) CTP synthase (EC 6.3.4.2) cluster;
pyrimidine conversions
fig|6666666.229899.peg.1403 CDS CP012959.1 1384136 1382025 -2 - 2112 Glycyl-tRNA synthetase beta chain (EC 6.1.1.14) Glycyl-tRNA synthetase;
Glycyl-tRNA synthetase containing cluster;
tRNA aminoacylation, Gly
fig|6666666.229899.peg.1404 CDS CP012959.1 1385997 1384129 -3 - 1869 ATPase family protein - none -
fig|6666666.229899.peg.1405 CDS CP012959.1 1386179 1386045 -2 - 135 hypothetical protein - none -
fig|6666666.229899.peg.1406 CDS CP012959.1 1386654 1386316 -3 - 339 FIG074102: hypothetical protein - none -
fig|6666666.229899.peg.1407 CDS CP012959.1 1387084 1386776 -1 - 309 FIG074102: hypothetical protein - none -
fig|6666666.229899.peg.1408 CDS CP012959.1 1387384 1387124 -1 - 261 Glutaredoxin-related protein Glutaredoxins
fig|6666666.229899.peg.1409 CDS CP012959.1 1388339 1387434 -2 - 906 Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14) Glycyl-tRNA synthetase;
Glycyl-tRNA synthetase containing cluster;
tRNA aminoacylation, Gly
fig|6666666.229899.peg.1410 CDS CP012959.1 1388693 1388484 -2 - 210 Ferredoxin-type protein NapF (periplasmic nitrate reductase) Nitrate and nitrite ammonification
fig|6666666.229899.peg.1411 CDS CP012959.1 1389321 1388707 -3 - 615 Putative oxidoreductase component of anaerobic dehydrogenases; Functional role page for Chaperone protein TorD - none -
fig|6666666.229899.peg.1412 CDS CP012959.1 1390194 1389355 -3 - 840 Anaerobic dimethyl sulfoxide reductase chain C (EC 1.8.99.-) Anaerobic respiratory reductases
fig|6666666.229899.peg.1413 CDS CP012959.1 1390813 1390196 -1 - 618 Anaerobic dimethyl sulfoxide reductase chain B (EC 1.8.99.-) Anaerobic respiratory reductases
fig|6666666.229899.peg.1414 CDS CP012959.1 1393244 1390824 -2 - 2421 Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-) Anaerobic respiratory reductases
fig|6666666.229899.peg.1415 CDS CP012959.1 1396551 1393750 -3 - 2802 DNA polymerase I (EC 2.7.7.7) DNA Repair Base Excision
fig|6666666.229899.peg.1416 CDS CP012959.1 1396768 1397331 1 + 564 Outer membrane protein 18/16 - none -
fig|6666666.229899.peg.1417 CDS CP012959.1 1397435 1397665 2 + 231 FIG00696102: hypothetical protein - none -
fig|6666666.229899.peg.1418 CDS CP012959.1 1397675 1399690 2 + 2016 ATP-dependent DNA helicase Rep DNA repair, bacterial UvrD and related helicases
fig|6666666.229899.peg.1419 CDS CP012959.1 1400586 1400206 -3 - 381 FIG00782409: hypothetical protein - none -
fig|6666666.229899.peg.1420 CDS CP012959.1 1400714 1401316 2 + 603 Putative phosphatase YqaB 2-phosphoglycolate salvage
fig|6666666.229899.peg.1421 CDS CP012959.1 1401316 1401921 1 + 606 Galactoside O-acetyltransferase (EC 2.3.1.18) Lactose utilization
fig|6666666.229899.peg.1422 CDS CP012959.1 1401924 1402409 3 + 486 Putative membrane protein - none -
fig|6666666.229899.peg.1423 CDS CP012959.1 1402621 1403127 1 + 507 S-ribosylhomocysteine lyase (EC 4.4.1.21) / Autoinducer-2 production protein LuxS Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon);
Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229899.peg.1424 CDS CP012959.1 1403294 1403458 2 + 165 hypothetical protein - none -
fig|6666666.229899.peg.1425 CDS CP012959.1 1403590 1404828 1 + 1239 hypothetical protein - none -
fig|6666666.229899.peg.1426 CDS CP012959.1 1404815 1406758 2 + 1944 hypothetical protein - none -
fig|6666666.229899.peg.1427 CDS CP012959.1 1407048 1408178 3 + 1131 hypothetical protein - none -
fig|6666666.229899.peg.1428 CDS CP012959.1 1408183 1408317 1 + 135 hypothetical protein - none -
fig|6666666.229899.peg.1429 CDS CP012959.1 1408362 1408670 3 + 309 Mobile element protein - none -
fig|6666666.229899.peg.1430 CDS CP012959.1 1408747 1409886 1 + 1140 Probable phospholipase protein - none -
fig|6666666.229899.peg.1431 CDS CP012959.1 1409883 1410950 3 + 1068 Probable phospholipase protein - none -
fig|6666666.229899.peg.1432 CDS CP012959.1 1411046 1412104 2 + 1059 hypothetical protein - none -
fig|6666666.229899.peg.1433 CDS CP012959.1 1412176 1413348 1 + 1173 hypothetical protein - none -
fig|6666666.229899.peg.1434 CDS CP012959.1 1413474 1413623 3 + 150 hypothetical protein - none -
fig|6666666.229899.peg.1435 CDS CP012959.1 1414284 1413886 -3 - 399 Integrase - none -
fig|6666666.229899.peg.1436 CDS CP012959.1 1415463 1414954 -3 - 510 unknown - none -
fig|6666666.229899.peg.1437 CDS CP012959.1 1415656 1415450 -1 - 207 hypothetical protein - none -
fig|6666666.229899.peg.1438 CDS CP012959.1 1416017 1415646 -2 - 372 FIG00696117: hypothetical protein - none -
fig|6666666.229899.peg.1439 CDS CP012959.1 1416813 1416010 -3 - 804 FIG00698594: hypothetical protein - none -
fig|6666666.229899.peg.1440 CDS CP012959.1 1417201 1417088 -1 - 114 hypothetical protein - none -
fig|6666666.229899.peg.1441 CDS CP012959.1 1417608 1417183 -3 - 426 hypothetical protein - none -
fig|6666666.229899.peg.1442 CDS CP012959.1 1418444 1417680 -2 - 765 Phage antirepressor protein - none -
fig|6666666.229899.peg.1443 CDS CP012959.1 1419043 1418738 -1 - 306 hypothetical protein - none -
fig|6666666.229899.peg.1444 CDS CP012959.1 1419445 1419215 -1 - 231 hypothetical protein - none -
fig|6666666.229899.peg.1445 CDS CP012959.1 1420003 1419551 -1 - 453 hypothetical protein - none -
fig|6666666.229899.peg.1446 CDS CP012959.1 1420277 1420017 -2 - 261 hypothetical protein - none -
fig|6666666.229899.peg.1447 CDS CP012959.1 1420497 1420288 -3 - 210 possible prophage CP4-57 regulatory protein - none -
fig|6666666.229899.peg.1448 CDS CP012959.1 1421460 1420684 -3 - 777 hypothetical protein - none -
fig|6666666.229899.peg.1449 CDS CP012959.1 1422141 1421470 -3 - 672 hypothetical protein - none -
fig|6666666.229899.peg.1450 CDS CP012959.1 1423559 1422315 -2 - 1245 Integrase - none -
fig|6666666.229899.peg.1451 CDS CP012959.1 1424682 1424455 -3 - 228 FIG00354920: hypothetical protein - none -
fig|6666666.229899.peg.1452 CDS CP012959.1 1427330 1424679 -2 - 2652 Putative uncharacterized protein ydbH - none -
fig|6666666.229899.peg.1453 CDS CP012959.1 1428134 1427517 -2 - 618 Multiple antibiotic resistance protein marC - none -
fig|6666666.229899.peg.1454 CDS CP012959.1 1428215 1430140 2 + 1926 Glutathione-regulated potassium-efflux system ATP-binding protein Potassium homeostasis
fig|6666666.229899.peg.1455 CDS CP012959.1 1430288 1431346 2 + 1059 RecA protein DNA repair, bacterial;
DNA repair, bacterial RecFOR pathway;
DNA repair system including RecA, MutS and a hypothetical protein;
RecA and RecX
fig|6666666.229899.peg.1456 CDS CP012959.1 1431428 1431886 2 + 459 Regulatory protein RecX DNA repair system including RecA, MutS and a hypothetical protein;
RecA and RecX
fig|6666666.229899.peg.1457 CDS CP012959.1 1431959 1432348 2 + 390 Endoribonuclease L-PSP - none -
fig|6666666.229899.peg.1458 CDS CP012959.1 1434528 1432417 -3 - 2112 Transketolase (EC 2.2.1.1) Pentose phosphate pathway
fig|6666666.229899.peg.1459 CDS CP012959.1 1435500 1434547 -3 - 954 Transaldolase (EC 2.2.1.2) Fructose utilization;
Pentose phosphate pathway
fig|6666666.229899.peg.1461 CDS CP012959.1 1442103 1442237 3 + 135 hypothetical protein - none -
fig|6666666.229899.peg.1462 CDS CP012959.1 1442494 1442769 1 + 276 Mobile element protein - none -
fig|6666666.229899.peg.1463 CDS CP012959.1 1442852 1442992 2 + 141 Mobile element protein - none -
fig|6666666.229899.peg.1464 CDS CP012959.1 1443029 1443277 2 + 249 Mobile element protein - none -
fig|6666666.229899.peg.1465 CDS CP012959.1 1444885 1443581 -1 - 1305 Predicted ATPase (AAA+ superfamily) - none -
fig|6666666.229899.peg.1466 CDS CP012959.1 1446622 1445291 -1 - 1332 ATP-dependent RNA helicase SrmB - none -
fig|6666666.229899.peg.1467 CDS CP012959.1 1446609 1446737 3 + 129 hypothetical protein - none -
fig|6666666.229899.peg.1468 CDS CP012959.1 1446721 1447419 1 + 699 tRNA (adenine37-N(6))-methyltransferase TrmN6 (EC 2.1.1.223) RNA methylation
fig|6666666.229899.peg.1469 CDS CP012959.1 1448183 1447494 -2 - 690 Ribosyl nicotinamide transporter, PnuC-like NAD and NADP cofactor biosynthesis global
fig|6666666.229899.peg.1470 CDS CP012959.1 1448564 1449223 2 + 660 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses;
Ribosome biogenesis bacterial;
tRNA modification Bacteria
fig|6666666.229899.peg.1471 CDS CP012959.1 1449245 1449361 2 + 117 hypothetical protein - none -
fig|6666666.229899.peg.1472 CDS CP012959.1 1450173 1449358 -3 - 816 VgrG-3 protein - none -
fig|6666666.229899.peg.1473 CDS CP012959.1 1450803 1451363 3 + 561 Protein of unknown function DUF414 - none -
fig|6666666.229899.peg.1474 CDS CP012959.1 1451376 1451810 3 + 435 Periplasmic/membrane protein associated with DUF414 - none -
fig|6666666.229899.peg.1475 CDS CP012959.1 1451829 1453196 3 + 1368 Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22) Heme and Siroheme Biosynthesis
fig|6666666.229899.peg.1476 CDS CP012959.1 1453713 1453270 -3 - 444 Histone acetyltransferase HPA2 and related acetyltransferases CBSS-216591.1.peg.168
fig|6666666.229899.peg.1477 CDS CP012959.1 1453886 1454653 2 + 768 Triosephosphate isomerase (EC 5.3.1.1) CBSS-331978.3.peg.2915;
Glycolysis and Gluconeogenesis
fig|6666666.229899.peg.1478 CDS CP012959.1 1454765 1455622 2 + 858 Naphthoate synthase (EC 4.1.3.36) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229899.peg.1479 CDS CP012959.1 1455662 1455775 2 + 114 Nucleotidyltransferase substrate binding protein, HI0074 - none -
fig|6666666.229899.peg.1480 CDS CP012959.1 1455828 1456082 3 + 255 Nucleotidyltransferase substrate binding protein, HI0074 - none -
fig|6666666.229899.peg.1481 CDS CP012959.1 1456064 1456393 2 + 330 Nucleotidyltransferase (EC 2.7.7.-) - none -
fig|6666666.229899.peg.1482 CDS CP012959.1 1456374 1457375 3 + 1002 O-succinylbenzoate synthase (EC 4.2.1.113) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo;
Muconate lactonizing enzyme family
fig|6666666.229899.peg.1483 CDS CP012959.1 1457474 1457950 2 + 477 3-dehydroquinate dehydratase II (EC 4.2.1.10) CBSS-221988.1.peg.1679;
Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate);
Quinate degradation
fig|6666666.229899.peg.1484 CDS CP012959.1 1458057 1457905 -3 - 153 hypothetical protein - none -
fig|6666666.229899.peg.1485 CDS CP012959.1 1458074 1458541 2 + 468 Biotin carboxyl carrier protein of acetyl-CoA carboxylase CBSS-221988.1.peg.1679;
Fatty Acid Biosynthesis FASII
fig|6666666.229899.peg.1486 CDS CP012959.1 1458585 1459931 3 + 1347 Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14) CBSS-221988.1.peg.1679;
Fatty Acid Biosynthesis FASII
fig|6666666.229899.peg.1487 CDS CP012959.1 1460040 1460174 3 + 135 hypothetical protein - none -
fig|6666666.229899.peg.1488 CDS CP012959.1 1460229 1460990 3 + 762 Periplasmic protein TonB, links inner and outer membranes - none -
fig|6666666.229899.peg.1489 CDS CP012959.1 1461109 1462497 1 + 1389 FOG: TPR repeat - none -
fig|6666666.229899.peg.1490 CDS CP012959.1 1462521 1462793 3 + 273 FIG003021: Membrane protein CBSS-221988.1.peg.1679
fig|6666666.229899.peg.1491 CDS CP012959.1 1462790 1464226 2 + 1437 Pantothenate:Na+ symporter (TC 2.A.21.1.1) CBSS-221988.1.peg.1679;
Coenzyme A Biosynthesis
fig|6666666.229899.peg.1492 CDS CP012959.1 1464236 1464787 2 + 552 Protein involved in cell division - none -
fig|6666666.229899.peg.1493 CDS CP012959.1 1464800 1465684 2 + 885 Ribosomal protein L11 methyltransferase (EC 2.1.1.-) Heat shock dnaK gene cluster extended;
Ribosome biogenesis bacterial
fig|6666666.229899.peg.1494 CDS CP012959.1 1465929 1466978 3 + 1050 tRNA dihydrouridine synthase B (EC 1.-.-.-) tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229899.peg.1495 CDS CP012959.1 1466972 1467271 2 + 300 DNA-binding protein Fis DNA structural proteins, bacterial
fig|6666666.229899.peg.1496 CDS CP012959.1 1468134 1467886 -3 - 249 unknown - none -
fig|6666666.229899.peg.1497 CDS CP012959.1 1468912 1468589 -1 - 324 Ribosome hibernation protein YfiA Ribosome activity modulation
fig|6666666.229899.peg.1498 CDS CP012959.1 1470514 1469141 -1 - 1374 Sodium/glycine symporter GlyP - none -
fig|6666666.229899.peg.1499 CDS CP012959.1 1470697 1470569 -1 - 129 hypothetical protein - none -
fig|6666666.229899.peg.1500 CDS CP012959.1 1471183 1470911 -1 - 273 FIG00904058: hypothetical protein - none -
fig|6666666.229899.peg.1501 CDS CP012959.1 1471395 1471183 -3 - 213 FIG003276: zinc-binding protein - none -
fig|6666666.229899.peg.1502 CDS CP012959.1 1472008 1471385 -1 - 624 Dephospho-CoA kinase (EC 2.7.1.24) Coenzyme A Biosynthesis
fig|6666666.229899.peg.1503 CDS CP012959.1 1472771 1472394 -2 - 378 Mobile element protein - none -
fig|6666666.229899.peg.1504 CDS CP012959.1 1474149 1473364 -3 - 786 Mobile element protein - none -
fig|6666666.229899.peg.1505 CDS CP012959.1 1474540 1474406 -1 - 135 hypothetical protein - none -
fig|6666666.229899.peg.1506 CDS CP012959.1 1476135 1474570 -3 - 1566 hypothetical protein - none -
fig|6666666.229899.peg.1507 CDS CP012959.1 1476153 1476281 3 + 129 hypothetical protein - none -
fig|6666666.229899.peg.1508 CDS CP012959.1 1478559 1476286 -3 - 2274 Glutathione biosynthesis bifunctional protein gshF (EC 6.3.2.2)(EC 6.3.2.3) Glutathione: Biosynthesis and gamma-glutamyl cycle
fig|6666666.229899.peg.1509 CDS CP012959.1 1478687 1478556 -2 - 132 hypothetical protein - none -
fig|6666666.229899.peg.1510 CDS CP012959.1 1478791 1480392 1 + 1602 Dca - none -
fig|6666666.229899.peg.1511 CDS CP012959.1 1480496 1480356 -2 - 141 hypothetical protein - none -
fig|6666666.229899.peg.1512 CDS CP012959.1 1480651 1481217 1 + 567 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent;
cAMP signaling in bacteria
fig|6666666.229899.peg.1513 CDS CP012959.1 1481227 1482459 1 + 1233 ATP-dependent Clp protease ATP-binding subunit ClpX Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229899.peg.1514 CDS CP012959.1 1482845 1482522 -2 - 324 FIG074102: hypothetical protein - none -
fig|6666666.229899.peg.1515 CDS CP012959.1 1483014 1482838 -3 - 177 Phage-related protein - none -
fig|6666666.229899.peg.1516 CDS CP012959.1 1484149 1483304 -1 - 846 membrane protein, putative - none -
fig|6666666.229899.peg.1517 CDS CP012959.1 1486381 1484222 -1 - 2160 Copper-translocating P-type ATPase (EC 3.6.3.4) Copper Transport System;
Copper homeostasis
fig|6666666.229899.peg.1518 CDS CP012959.1 1486680 1486468 -3 - 213 Copper chaperone Copper homeostasis
fig|6666666.229899.peg.1519 CDS CP012959.1 1486939 1487160 1 + 222 Cu(I)-responsive transcriptional regulator Copper homeostasis
fig|6666666.229899.peg.1520 CDS CP012959.1 1487375 1487566 2 + 192 Mobile element protein - none -
fig|6666666.229899.peg.1521 CDS CP012959.1 1487729 1487977 2 + 249 Mobile element protein - none -
fig|6666666.229899.peg.1522 CDS CP012959.1 1488424 1488645 1 + 222 probable transcription regulator - none -
fig|6666666.229899.peg.1523 CDS CP012959.1 1493162 1488894 -2 - 4269 DNA-directed RNA polymerase beta@1 subunit (EC 2.7.7.6) Mycobacterium virulence operon involved in DNA transcription;
RNA polymerase bacterial
fig|6666666.229899.peg.1524 CDS CP012959.1 1497293 1493265 -2 - 4029 DNA-directed RNA polymerase beta subunit (EC 2.7.7.6) Mycobacterium virulence operon involved in DNA transcription;
RNA polymerase bacterial
fig|6666666.229899.peg.1525 CDS CP012959.1 1497935 1497564 -2 - 372 LSU ribosomal protein L7/L12 (P1/P2) LSU ribosomal proteins cluster;
Ribosome LSU bacterial
fig|6666666.229899.peg.1526 CDS CP012959.1 1498478 1497987 -2 - 492 LSU ribosomal protein L10p (P0) LSU ribosomal proteins cluster;
Ribosome LSU bacterial
fig|6666666.229899.peg.1527 CDS CP012959.1 1498819 1498649 -1 - 171 hypothetical protein - none -
fig|6666666.229899.peg.1528 CDS CP012959.1 1499523 1498834 -3 - 690 LSU ribosomal protein L1p (L10Ae) LSU ribosomal proteins cluster;
Ribosome LSU bacterial
fig|6666666.229899.peg.1529 CDS CP012959.1 1499956 1499528 -1 - 429 LSU ribosomal protein L11p (L12e) LSU ribosomal proteins cluster;
Ribosome LSU bacterial
fig|6666666.229899.peg.1530 CDS CP012959.1 1500663 1500112 -3 - 552 Transcription antitermination protein NusG LSU ribosomal proteins cluster;
Transcription factors bacterial
fig|6666666.229899.peg.1531 CDS CP012959.1 1501075 1500665 -1 - 411 Preprotein translocase subunit SecE (TC 3.A.5.1.1) LSU ribosomal proteins cluster
fig|6666666.229899.peg.1532 CDS CP012959.1 1502217 1501513 -3 - 705 hypothetical protein - none -
fig|6666666.229899.peg.1533 CDS CP012959.1 1502531 1502277 -2 - 255 Mobile element protein - none -
fig|6666666.229899.peg.1534 CDS CP012959.1 1503141 1502860 -3 - 282 hypothetical protein - none -
fig|6666666.229899.peg.1535 CDS CP012959.1 1503409 1503233 -1 - 177 hypothetical protein - none -
fig|6666666.229899.peg.1536 CDS CP012959.1 1504428 1503418 -3 - 1011 hypothetical protein - none -
fig|6666666.229899.peg.1537 CDS CP012959.1 1506422 1504431 -2 - 1992 hypothetical protein - none -
fig|6666666.229899.peg.1538 CDS CP012959.1 1507686 1506574 -3 - 1113 hypothetical protein - none -
fig|6666666.229899.peg.1539 CDS CP012959.1 1507910 1507731 -2 - 180 hypothetical protein - none -
fig|6666666.229899.peg.1540 CDS CP012959.1 1508765 1508079 -2 - 687 Leader peptidase (Prepilin peptidase) (EC 3.4.23.43) / N-methyltransferase (EC 2.1.1.-) Type IV pilus;
Type IV pilus
fig|6666666.229899.peg.1541 CDS CP012959.1 1509988 1508765 -1 - 1224 Type II secretory pathway, component PulF / Type IV fimbrial assembly protein PilC Type IV pilus
fig|6666666.229899.peg.1542 CDS CP012959.1 1511390 1509981 -2 - 1410 Type IV fimbrial assembly, ATPase PilB Type IV pilus
fig|6666666.229899.peg.1543 CDS CP012959.1 1511938 1511417 -1 - 522 Type IV pilin PilA Type IV pilus
fig|6666666.229899.peg.1544 CDS CP012959.1 1511991 1512545 3 + 555 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD Recycling of Peptidoglycan Amino Acids
fig|6666666.229899.peg.1545 CDS CP012959.1 1513484 1513011 -2 - 474 Putative sugar isomerase involved in processing of exogenous sialic acid Sialic Acid Metabolism
fig|6666666.229899.peg.1546 CDS CP012959.1 1513649 1515907 2 + 2259 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) Bacterial RNA-metabolizing Zn-dependent hydrolases;
Polyadenylation bacterial
fig|6666666.229899.peg.1547 CDS CP012959.1 1515992 1516894 2 + 903 Lipoprotein nlpI precursor - none -
fig|6666666.229899.peg.1548 CDS CP012959.1 1517021 1518808 2 + 1788 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) - none -
fig|6666666.229899.peg.1549 CDS CP012959.1 1519502 1518891 -2 - 612 UDP-glucose dehydrogenase (EC 1.1.1.22) - none -
fig|6666666.229899.peg.1550 CDS CP012959.1 1519559 1519714 2 + 156 Mobile element protein - none -
fig|6666666.229899.peg.1551 CDS CP012959.1 1519807 1520910 1 + 1104 Sugar diacid utilization regulator SdaR D-galactarate, D-glucarate and D-glycerate catabolism;
D-galactarate, D-glucarate and D-glycerate catabolism - gjo
fig|6666666.229899.peg.1552 CDS CP012959.1 1521042 1522316 3 + 1275 D-glycerate transporter (predicted) D-galactarate, D-glucarate and D-glycerate catabolism;
D-galactarate, D-glucarate and D-glycerate catabolism - gjo;
Glycerate metabolism
fig|6666666.229899.peg.1553 CDS CP012959.1 1522313 1523452 2 + 1140 Glycerate kinase (EC 2.7.1.31) D-galactarate, D-glucarate and D-glycerate catabolism;
D-galactarate, D-glucarate and D-glycerate catabolism - gjo;
Glycerate metabolism;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Glycine and Serine Utilization;
Serine-glyoxylate cycle
fig|6666666.229899.peg.1554 CDS CP012959.1 1524062 1523523 -2 - 540 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) Cell division-ribosomal stress proteins cluster;
Folate biosynthesis cluster;
Purine conversions
fig|6666666.229899.peg.1555 CDS CP012959.1 1525662 1524301 -3 - 1362 TldE protein, part of TldE/TldD proteolytic complex Putative TldE-TldD proteolytic complex
fig|6666666.229899.peg.1556 CDS CP012959.1 1525779 1526312 3 + 534 FIG138315: Putative alpha helix protein Putative TldE-TldD proteolytic complex
fig|6666666.229899.peg.1557 CDS CP012959.1 1527761 1526370 -2 - 1392 Arsenic efflux pump protein Arsenic resistance
fig|6666666.229899.peg.1558 CDS CP012959.1 1528450 1527950 -1 - 501 Ribonuclease E inhibitor RraA RNA processing and degradation, bacterial
fig|6666666.229899.peg.1559 CDS CP012959.1 1529445 1528501 -3 - 945 1,4-dihydroxy-2-naphthoate polyprenyltransferase (EC 2.5.1.74) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229899.peg.1560 CDS CP012959.1 1529575 1530291 1 + 717 COG1720: Uncharacterized conserved protein tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229899.peg.1561 CDS CP012959.1 1530643 1530389 -1 - 255 Mobile element protein - none -
fig|6666666.229899.peg.1562 CDS CP012959.1 1531288 1530809 -1 - 480 hypothetical protein - none -
fig|6666666.229899.peg.1563 CDS CP012959.1 1532914 1531664 -1 - 1251 hypothetical protein - none -
fig|6666666.229899.peg.1564 CDS CP012959.1 1534538 1532934 -2 - 1605 hypothetical protein - none -
fig|6666666.229899.peg.1565 CDS CP012959.1 1535726 1534548 -2 - 1179 hypothetical protein - none -
fig|6666666.229899.peg.1566 CDS CP012959.1 1536934 1535999 -1 - 936 Cell division protein FtsX Bacterial Cell Division
fig|6666666.229899.peg.1567 CDS CP012959.1 1537593 1536943 -3 - 651 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) Bacterial Cell Division
fig|6666666.229899.peg.1568 CDS CP012959.1 1539008 1537632 -2 - 1377 Signal recognition particle receptor protein FtsY (=alpha subunit) (TC 3.A.5.1.1) Bacterial Cell Division;
Bacterial signal recognition particle (SRP);
Universal GTPases
fig|6666666.229899.peg.1569 CDS CP012959.1 1539096 1539680 3 + 585 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) CBSS-266117.6.peg.1260;
CBSS-269801.1.peg.1715;
RNA methylation
fig|6666666.229899.peg.1570 CDS CP012959.1 1539979 1540944 1 + 966 PTS system, mannose-specific IIA component (EC 2.7.1.69) / PTS system, mannose-specific IIB component (EC 2.7.1.69) Mannose Metabolism;
Mannose Metabolism;
Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229899.peg.1571 CDS CP012959.1 1540962 1541759 3 + 798 PTS system, mannose-specific IIC component (EC 2.7.1.69) Mannose Metabolism;
Sialic Acid Metabolism
fig|6666666.229899.peg.1572 CDS CP012959.1 1541773 1542609 1 + 837 PTS system, mannose-specific IID component (EC 2.7.1.69) Mannose Metabolism;
Sialic Acid Metabolism
fig|6666666.229899.peg.1573 CDS CP012959.1 1542719 1543894 2 + 1176 Cof protein - none -
fig|6666666.229899.peg.1574 CDS CP012959.1 1544185 1545435 1 + 1251 Na+ dependent nucleoside transporter NupC Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.229899.peg.1575 CDS CP012959.1 1545561 1546280 3 + 720 Purine nucleoside phosphorylase (EC 2.4.2.1) Adenosyl nucleosidases;
Deoxyribose and Deoxynucleoside Catabolism;
Purine conversions;
pyrimidine conversions
fig|6666666.229899.peg.1576 CDS CP012959.1 1546298 1546441 2 + 144 hypothetical protein - none -
fig|6666666.229899.peg.1577 CDS CP012959.1 1546583 1548970 2 + 2388 Biofilm PGA outer membrane secretin PgaA Biofilm Adhesin Biosynthesis
fig|6666666.229899.peg.1578 CDS CP012959.1 1548986 1550902 2 + 1917 Biofilm PGA synthesis deacetylase PgaB (EC 3.-) Biofilm Adhesin Biosynthesis
fig|6666666.229899.peg.1579 CDS CP012959.1 1550911 1552146 1 + 1236 Biofilm PGA synthesis N-glycosyltransferase PgaC (EC 2.4.-.-) Biofilm Adhesin Biosynthesis
fig|6666666.229899.peg.1580 CDS CP012959.1 1552149 1552442 3 + 294 AagD - none -
fig|6666666.229899.peg.1581 CDS CP012959.1 1552532 1552410 -2 - 123 hypothetical protein - none -
fig|6666666.229899.peg.1582 CDS CP012959.1 1553885 1552560 -2 - 1326 Hexose phosphate uptake regulatory protein UhpC - none -
fig|6666666.229899.peg.1583 CDS CP012959.1 1554056 1554688 2 + 633 Pyridoxamine 5@1-phosphate oxidase (EC 1.4.3.5) Pyridoxin (Vitamin B6) Biosynthesis
fig|6666666.229899.peg.1584 CDS CP012959.1 1554780 1554640 -3 - 141 hypothetical protein - none -
fig|6666666.229899.peg.1585 CDS CP012959.1 1555436 1556191 2 + 756 Mobile element protein - none -
fig|6666666.229899.peg.1586 CDS CP012959.1 1556845 1556991 1 + 147 hypothetical protein - none -
fig|6666666.229899.peg.1587 CDS CP012959.1 1557979 1557323 -1 - 657 Mobile element protein - none -
fig|6666666.229899.peg.1588 CDS CP012959.1 1558295 1558131 -2 - 165 Mobile element protein - none -
fig|6666666.229899.peg.1589 CDS CP012959.1 1559152 1559268 1 + 117 hypothetical protein - none -
fig|6666666.229899.peg.1590 CDS CP012959.1 1561483 1560479 -1 - 1005 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis;
Pyridoxin (Vitamin B6) Biosynthesis
fig|6666666.229899.peg.1591 CDS CP012959.1 1561654 1562364 1 + 711 Guanylate kinase (EC 2.7.4.8) CBSS-323097.3.peg.2594;
Purine conversions
fig|6666666.229899.peg.1592 CDS CP012959.1 1562422 1562688 1 + 267 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) CBSS-176299.4.peg.1292;
RNA polymerase bacterial
fig|6666666.229899.peg.1593 CDS CP012959.1 1562734 1564857 1 + 2124 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II / Guanosine-3@1,5@1-bis(diphosphate) 3@1-pyrophosphohydrolase (EC 3.1.7.2) CBSS-176299.4.peg.1292;
CBSS-176299.4.peg.1292;
Stringent Response, (p)ppGpp metabolism;
Stringent Response, (p)ppGpp metabolism
fig|6666666.229899.peg.1594 CDS CP012959.1 1564859 1566940 2 + 2082 ATP-dependent DNA helicase RecG (EC 3.6.1.-) - none -
fig|6666666.229899.peg.1595 CDS CP012959.1 1566933 1567427 3 + 495 Chorismate--pyruvate lyase (EC 4.1.3.40) Ubiquinone Biosynthesis
fig|6666666.229899.peg.1596 CDS CP012959.1 1567461 1568288 3 + 828 Glutamate racemase (EC 5.1.1.3) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Peptidoglycan Biosynthesis
fig|6666666.229899.peg.1598 CDS CP012959.1 1574311 1574733 1 + 423 Mobile element protein - none -
fig|6666666.229899.peg.1599 CDS CP012959.1 1574730 1575239 3 + 510 Mobile element protein - none -
fig|6666666.229899.peg.1600 CDS CP012959.1 1575973 1576101 1 + 129 hypothetical protein - none -
fig|6666666.229899.peg.1601 CDS CP012959.1 1577071 1576355 -1 - 717 Mg(2+) transport ATPase protein C Magnesium transport
fig|6666666.229899.peg.1602 CDS CP012959.1 1577348 1577073 -2 - 276 tRNA pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses;
tRNA modification Archaea;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229899.peg.1603 CDS CP012959.1 1577767 1579269 1 + 1503 Sodium-dependent transporter - none -
fig|6666666.229899.peg.1604 CDS CP012959.1 1579795 1580439 1 + 645 3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster;
riboflavin to FAD
fig|6666666.229899.peg.1605 CDS CP012959.1 1581530 1580526 -2 - 1005 Tryptophanyl-tRNA synthetase (EC 6.1.1.2) tRNA aminoacylation, Trp
fig|6666666.229899.peg.1606 CDS CP012959.1 1582699 1582025 -1 - 675 Phosphoglycolate phosphatase (EC 3.1.3.18) 2-phosphoglycolate salvage;
Glycolate, glyoxylate interconversions
fig|6666666.229899.peg.1607 CDS CP012959.1 1583376 1582702 -3 - 675 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) Conserved gene cluster associated with Met-tRNA formyltransferase;
Pentose phosphate pathway;
Riboflavin synthesis cluster
fig|6666666.229899.peg.1608 CDS CP012959.1 1583528 1583806 2 + 279 Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage Bacterial Cell Division;
Bacterial Cytoskeleton;
Cell division-ribosomal stress proteins cluster;
Stationary phase repair cluster
fig|6666666.229899.peg.1609 CDS CP012959.1 1583806 1584501 1 + 696 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC 2.7.7.60) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis;
Stationary phase repair cluster
fig|6666666.229899.peg.1610 CDS CP012959.1 1584498 1584977 3 + 480 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis;
Stationary phase repair cluster
fig|6666666.229899.peg.1611 CDS CP012959.1 1584974 1585984 2 + 1011 tRNA pseudouridine 13 synthase (EC 4.2.1.-) Stationary phase repair cluster;
tRNA modification Archaea;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229899.peg.1612 CDS CP012959.1 1586017 1586757 1 + 741 5-nucleotidase SurE (EC 3.1.3.5) @ Exopolyphosphatase (EC 3.6.1.11) Housecleaning nucleoside triphosphate pyrophosphatases;
Phosphate metabolism;
Polyphosphate;
Stationary phase repair cluster
fig|6666666.229899.peg.1613 CDS CP012959.1 1586785 1587360 1 + 576 FIG139438: lipoprotein B Stationary phase repair cluster
fig|6666666.229899.peg.1614 CDS CP012959.1 1587375 1587566 3 + 192 Cobalamin biosynthesis protein CobN and related Mg-chelatases - none -
fig|6666666.229899.peg.1615 CDS CP012959.1 1587583 1588752 1 + 1170 Lipoprotein NlpD Stationary phase repair cluster
fig|6666666.229899.peg.1616 CDS CP012959.1 1589070 1588903 -3 - 168 hypothetical protein - none -
fig|6666666.229899.peg.1617 CDS CP012959.1 1589274 1589119 -3 - 156 Mobile element protein - none -
fig|6666666.229899.peg.1618 CDS CP012959.1 1590527 1589382 -2 - 1146 Beta-hexosaminidase (EC 3.2.1.52) Chitin and N-acetylglucosamine utilization
fig|6666666.229899.peg.1619 CDS CP012959.1 1591088 1590663 -2 - 426 Nucleoside diphosphate kinase (EC 2.7.4.6) CBSS-498211.3.peg.1415;
Purine conversions;
pyrimidine conversions
fig|6666666.229899.peg.1620 CDS CP012959.1 1592407 1591100 -1 - 1308 Peptidase B (EC 3.4.11.23) Aminopeptidases (EC 3.4.11.-)
fig|6666666.229899.peg.1621 CDS CP012959.1 1592602 1592450 -1 - 153 hypothetical protein - none -
fig|6666666.229899.peg.1622 CDS CP012959.1 1592627 1592845 2 + 219 Translation initiation factor 1 Translation initiation factors bacterial
fig|6666666.229899.peg.1623 CDS CP012959.1 1594452 1592908 -3 - 1545 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE Copper homeostasis: copper tolerance;
Lipoprotein Biosynthesis;
tRNA-methylthiotransferase containing cluster;
tRNA-methylthiotransferase containing cluster
fig|6666666.229899.peg.1624 CDS CP012959.1 1595740 1594844 -1 - 897 Magnesium and cobalt efflux protein CorC CBSS-56780.10.peg.1536;
Copper homeostasis: copper tolerance;
Glycyl-tRNA synthetase containing cluster;
Magnesium transport;
tRNA-methylthiotransferase containing cluster
fig|6666666.229899.peg.1625 CDS CP012959.1 1595820 1595948 3 + 129 hypothetical protein - none -
fig|6666666.229899.peg.1626 CDS CP012959.1 1595986 1596993 1 + 1008 [Citrate [pro-3S]-lyase] ligase (EC 6.2.1.22) Citrate Metabolism, Transport, and Regulation
fig|6666666.229899.peg.1627 CDS CP012959.1 1597033 1597320 1 + 288 Citrate lyase gamma chain, acyl carrier protein (EC 4.1.3.6) Citrate Metabolism, Transport, and Regulation;
TCA Cycle
fig|6666666.229899.peg.1628 CDS CP012959.1 1597317 1598192 3 + 876 Citrate lyase beta chain (EC 4.1.3.6) Citrate Metabolism, Transport, and Regulation
fig|6666666.229899.peg.1629 CDS CP012959.1 1598207 1599709 2 + 1503 Citrate lyase alpha chain (EC 4.1.3.6) Citrate Metabolism, Transport, and Regulation
fig|6666666.229899.peg.1630 CDS CP012959.1 1599903 1601315 3 + 1413 2-(5@1@1-triphosphoribosyl)-3@1-dephosphocoenzyme-A synthase (EC 2.7.8.25) Citrate Metabolism, Transport, and Regulation
fig|6666666.229899.peg.1631 CDS CP012959.1 1601302 1602735 1 + 1434 2-oxoglutarate/malate translocator - none -
fig|6666666.229899.peg.1632 CDS CP012959.1 1603014 1604513 3 + 1500 Putative ATP /GTP binding protein - none -
fig|6666666.229899.peg.1633 CDS CP012959.1 1605809 1604778 -2 - 1032 Aldose 1-epimerase (EC 5.1.3.3) Lactose and Galactose Uptake and Utilization;
Maltose and Maltodextrin Utilization
fig|6666666.229899.peg.1634 CDS CP012959.1 1606957 1605803 -1 - 1155 Galactokinase (EC 2.7.1.6) Lactose and Galactose Uptake and Utilization
fig|6666666.229899.peg.1635 CDS CP012959.1 1608068 1607025 -2 - 1044 Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10) Lactose and Galactose Uptake and Utilization
fig|6666666.229899.peg.1636 CDS CP012959.1 1608310 1609323 1 + 1014 Galactose operon repressor, GalR-LacI family of transcriptional regulators Lactose and Galactose Uptake and Utilization
fig|6666666.229899.peg.1637 CDS CP012959.1 1609538 1610530 2 + 993 Galactose/methyl galactoside ABC transport system, D-galactose-binding periplasmic protein MglB (TC 3.A.1.2.3) Bacterial Chemotaxis;
Lactose and Galactose Uptake and Utilization
fig|6666666.229899.peg.1638 CDS CP012959.1 1610606 1611085 2 + 480 Galactose/methyl galactoside ABC transport system, ATP-binding protein MglA (EC 3.6.3.17) Lactose and Galactose Uptake and Utilization
fig|6666666.229899.peg.1639 CDS CP012959.1 1611092 1612174 2 + 1083 Galactose/methyl galactoside ABC transport system, ATP-binding protein MglA (EC 3.6.3.17) Lactose and Galactose Uptake and Utilization
fig|6666666.229899.peg.1640 CDS CP012959.1 1612152 1613162 3 + 1011 Galactose/methyl galactoside ABC transport system, permease protein MglC (TC 3.A.1.2.3) Lactose and Galactose Uptake and Utilization
fig|6666666.229899.peg.1641 CDS CP012959.1 1615084 1613237 -1 - 1848 Aerobic respiration control sensor protein arcB (EC 2.7.3.-) - none -
fig|6666666.229899.peg.1642 CDS CP012959.1 1615110 1615244 3 + 135 hypothetical protein - none -
fig|6666666.229899.peg.1643 CDS CP012959.1 1616445 1615225 -3 - 1221 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41) Fatty Acid Biosynthesis FASII
fig|6666666.229899.peg.1644 CDS CP012959.1 1616615 1618633 2 + 2019 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) CBSS-354.1.peg.876;
RNA methylation;
Riboflavin, FMN and FAD metabolism in plants;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229899.peg.1645 CDS CP012959.1 1618823 1620166 2 + 1344 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229899.peg.1646 CDS CP012959.1 1620445 1621893 1 + 1449 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229899.peg.1647 CDS CP012959.1 1622581 1622003 -1 - 579 Heat shock protein GrpE GroEL GroES;
Heat shock dnaK gene cluster extended;
Protein chaperones
fig|6666666.229899.peg.1648 CDS CP012959.1 1622549 1622677 2 + 129 hypothetical protein - none -
fig|6666666.229899.peg.1649 CDS CP012959.1 1622722 1623639 1 + 918 NAD kinase (EC 2.7.1.23) NAD and NADP cofactor biosynthesis global
fig|6666666.229899.peg.1650 CDS CP012959.1 1623713 1625389 2 + 1677 DNA repair protein RecN DNA repair, bacterial
fig|6666666.229899.peg.1651 CDS CP012959.1 1625876 1625457 -2 - 420 Outer membrane protein W precursor - none -
fig|6666666.229899.peg.1652 CDS CP012959.1 1626105 1625896 -3 - 210 hypothetical protein - none -
fig|6666666.229899.peg.1653 CDS CP012959.1 1626378 1627136 3 + 759 Membrane protein involved in the export of O-antigen and teichoic acid - none -
fig|6666666.229899.peg.1654 CDS CP012959.1 1627142 1627693 2 + 552 Intracellular septation protein IspA CBSS-211586.9.peg.2729;
Intracellular septation in Enterobacteria
fig|6666666.229899.peg.1655 CDS CP012959.1 1627697 1628167 2 + 471 Acyl-CoA thioesterase YciA, involved in membrane biogenesis CBSS-211586.9.peg.2729;
Intracellular septation in Enterobacteria
fig|6666666.229899.peg.1656 CDS CP012959.1 1628170 1628466 1 + 297 YciL protein Broadly distributed proteins not in subsystems;
CBSS-211586.9.peg.2729
fig|6666666.229899.peg.1657 CDS CP012959.1 1628993 1631209 2 + 2217 Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) Murein Hydrolases
fig|6666666.229899.peg.1658 CDS CP012959.1 1631242 1631550 1 + 309 Transcriptional repressor protein TrpR Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate);
Tryptophan synthesis
fig|6666666.229899.peg.1659 CDS CP012959.1 1631528 1632301 2 + 774 Monofunctional biosynthetic peptidoglycan transglycosylase (EC 2.4.2.-) Peptidoglycan Biosynthesis
fig|6666666.229899.peg.1660 CDS CP012959.1 1632558 1632358 -3 - 201 hypothetical protein - none -
fig|6666666.229899.peg.1661 CDS CP012959.1 1632629 1632775 2 + 147 hypothetical protein - none -
fig|6666666.229899.peg.1662 CDS CP012959.1 1633324 1632995 -1 - 330 Preprotein translocase subunit SecG (TC 3.A.5.1.1) CBSS-331978.3.peg.2915;
Murein hydrolase regulation and cell death
fig|6666666.229899.peg.1663 CDS CP012959.1 1635434 1633497 -2 - 1938 DNA topoisomerase III (EC 5.99.1.2) DNA processing cluster;
DNA topoisomerases, Type I, ATP-independent
fig|6666666.229899.peg.1664 CDS CP012959.1 1636068 1635466 -3 - 603 Recombination protein RecR DNA processing cluster;
DNA repair, bacterial RecFOR pathway
fig|6666666.229899.peg.1665 CDS CP012959.1 1636596 1636153 -3 - 444 FIG000557: hypothetical protein co-occurring with RecR DNA processing cluster
fig|6666666.229899.peg.1666 CDS CP012959.1 1636667 1637737 2 + 1071 Phosphoesterase (EC 3.1.-.-) - none -
fig|6666666.229899.peg.1667 CDS CP012959.1 1637806 1638699 1 + 894 Iron(III) dicitrate transport system, periplasmic iron-binding protein FecB (TC 3.A.1.14.1) - none -
fig|6666666.229899.peg.1668 CDS CP012959.1 1638699 1639688 3 + 990 Iron(III) dicitrate transport system permease protein FecC (TC 3.A.1.14.1) - none -
fig|6666666.229899.peg.1669 CDS CP012959.1 1639688 1640671 2 + 984 Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1) - none -
fig|6666666.229899.peg.1670 CDS CP012959.1 1640671 1641438 1 + 768 Iron(III) dicitrate transport ATP-binding protein FecE (TC 3.A.1.14.1) - none -
fig|6666666.229899.peg.1671 CDS CP012959.1 1642475 1641504 -2 - 972 Translation elongation factor P Lys34:lysine transferase Translation elongation factor P lysylation
fig|6666666.229899.peg.1672 CDS CP012959.1 1642539 1642727 3 + 189 hypothetical protein - none -
fig|6666666.229899.peg.1673 CDS CP012959.1 1642783 1644591 1 + 1809 Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) Serine-glyoxylate cycle;
Succinate dehydrogenase;
TCA Cycle
fig|6666666.229899.peg.1674 CDS CP012959.1 1644596 1645366 2 + 771 Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) 5-FCL-like protein;
Serine-glyoxylate cycle;
Succinate dehydrogenase;
TCA Cycle
fig|6666666.229899.peg.1675 CDS CP012959.1 1645378 1645770 1 + 393 Fumarate reductase subunit C Succinate dehydrogenase
fig|6666666.229899.peg.1676 CDS CP012959.1 1645780 1646124 1 + 345 Fumarate reductase subunit D Succinate dehydrogenase
fig|6666666.229899.peg.1677 CDS CP012959.1 1648359 1646221 -3 - 2139 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) RNA methylation
fig|6666666.229899.peg.1678 CDS CP012959.1 1648630 1649658 1 + 1029 Alcohol dehydrogenase (EC 1.1.1.1) 5-FCL-like protein;
Butanol Biosynthesis;
Fermentations: Mixed acid;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229899.peg.1679 CDS CP012959.1 1650951 1649737 -3 - 1215 ATPase component BioM of energizing module of biotin ECF transporter Biotin biosynthesis;
Biotin synthesis cluster
fig|6666666.229899.peg.1680 CDS CP012959.1 1651906 1651076 -1 - 831 Queuosine Biosynthesis QueC ATPase Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229899.peg.1681 CDS CP012959.1 1652128 1652592 1 + 465 FIG00710847: hypothetical protein - none -
fig|6666666.229899.peg.1682 CDS CP012959.1 1652565 1653392 3 + 828 FIG00711691: hypothetical protein - none -
fig|6666666.229899.peg.1683 CDS CP012959.1 1654727 1653903 -2 - 825 3@1,5@1-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17) cAMP signaling in bacteria
fig|6666666.229899.peg.1684 CDS CP012959.1 1655401 1654778 -1 - 624 ADP-ribose pyrophosphatase (EC 3.6.1.13) CBSS-216591.1.peg.168;
NAD and NADP cofactor biosynthesis global;
Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229899.peg.1685 CDS CP012959.1 1656327 1655647 -3 - 681 FIG009095: D,D-carboxypeptidase family protein CBSS-584.1.peg.1352
fig|6666666.229899.peg.1686 CDS CP012959.1 1657462 1656329 -1 - 1134 N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18) A Glutathione-dependent Thiol Reductase Associated with a Step in Lysine Biosynthesis;
CBSS-584.1.peg.1352;
Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229899.peg.1687 CDS CP012959.1 1657943 1657599 -2 - 345 FIG138056: a glutathione-dependent thiol reductase A Glutathione-dependent Thiol Reductase Associated with a Step in Lysine Biosynthesis;
CBSS-584.1.peg.1352
fig|6666666.229899.peg.1688 CDS CP012959.1 1659889 1658009 -1 - 1881 Chaperone protein HtpG Protein chaperones
fig|6666666.229899.peg.1689 CDS CP012959.1 1661183 1660023 -2 - 1161 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) Chorismate Synthesis;
Chorismate Synthesis;
Phenylalanine and Tyrosine Branches from Chorismate;
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229899.peg.1690 CDS CP012959.1 1662299 1661382 -2 - 918 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC 3.5.1.108) KDO2-Lipid A biosynthesis
fig|6666666.229899.peg.1691 CDS CP012959.1 1663617 1662337 -3 - 1281 Cell division protein FtsZ (EC 3.4.24.-) Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ;
cell division core of larger cluster
fig|6666666.229899.peg.1692 CDS CP012959.1 1664981 1663701 -2 - 1281 Cell division protein FtsA Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ;
cell division core of larger cluster
fig|6666666.229899.peg.1693 CDS CP012959.1 1665773 1665006 -2 - 768 Cell division protein FtsQ Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ;
cell division core of larger cluster
fig|6666666.229899.peg.1694 CDS CP012959.1 1666699 1665770 -1 - 930 D-alanine--D-alanine ligase (EC 6.3.2.4) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo;
cell division cluster containing FtsQ
fig|6666666.229899.peg.1695 CDS CP012959.1 1668205 1666712 -1 - 1494 UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo;
cell division cluster containing FtsQ
fig|6666666.229899.peg.1696 CDS CP012959.1 1669277 1668213 -2 - 1065 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) Peptidoglycan Biosynthesis;
cell division core of larger cluster
fig|6666666.229899.peg.1697 CDS CP012959.1 1670507 1669317 -2 - 1191 Cell division protein FtsW Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ
fig|6666666.229899.peg.1698 CDS CP012959.1 1671826 1670522 -1 - 1305 UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC 6.3.2.9) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo
fig|6666666.229899.peg.1699 CDS CP012959.1 1672938 1671853 -3 - 1086 Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC 2.7.8.13) Peptidoglycan Biosynthesis
fig|6666666.229899.peg.1700 CDS CP012959.1 1674260 1672932 -2 - 1329 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase (EC 6.3.2.10) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo
fig|6666666.229899.peg.1701 CDS CP012959.1 1675782 1674316 -3 - 1467 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo
fig|6666666.229899.peg.1702 CDS CP012959.1 1677623 1675800 -2 - 1824 Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129) 16S rRNA modification within P site of ribosome;
Bacterial Cell Division;
Bacterial Cytoskeleton;
CBSS-83331.1.peg.3039;
Peptidoglycan Biosynthesis
fig|6666666.229899.peg.1703 CDS CP012959.1 1677958 1677641 -1 - 318 Cell division protein FtsL 16S rRNA modification within P site of ribosome;
Bacterial Cell Division;
Bacterial Cytoskeleton;
Stationary phase repair cluster
fig|6666666.229899.peg.1704 CDS CP012959.1 1678926 1677958 -3 - 969 rRNA small subunit methyltransferase H 16S rRNA modification within P site of ribosome;
Bacterial Cell Division
fig|6666666.229899.peg.1705 CDS CP012959.1 1679494 1679036 -1 - 459 Cell division protein MraZ 16S rRNA modification within P site of ribosome;
Bacterial Cell Division;
Bacterial Cytoskeleton
fig|6666666.229899.peg.1706 CDS CP012959.1 1681356 1679758 -3 - 1599 Carbon starvation protein A Carbon Starvation
fig|6666666.229899.peg.1707 CDS CP012959.1 1682584 1681898 -1 - 687 Arginine ABC transporter, permease protein ArtM Arginine and Ornithine Degradation
fig|6666666.229899.peg.1708 CDS CP012959.1 1683246 1682584 -3 - 663 Arginine ABC transporter, permease protein ArtQ Arginine and Ornithine Degradation
fig|6666666.229899.peg.1709 CDS CP012959.1 1683970 1683251 -1 - 720 Arginine ABC transporter, periplasmic arginine-binding protein ArtI Arginine and Ornithine Degradation
fig|6666666.229899.peg.1710 CDS CP012959.1 1684725 1683991 -3 - 735 Arginine ABC transporter, ATP-binding protein ArtP Arginine and Ornithine Degradation
fig|6666666.229899.peg.1711 CDS CP012959.1 1685450 1684866 -2 - 585 Phosphoheptose isomerase 1 (EC 5.3.1.-) Capsular heptose biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.229899.peg.1712 CDS CP012959.1 1689010 1685552 -1 - 3459 Transcription-repair coupling factor Cell division-ribosomal stress proteins cluster;
Transcription factors bacterial;
Transcription repair cluster
fig|6666666.229899.peg.1713 CDS CP012959.1 1689517 1690284 1 + 768 Mobile element protein - none -
fig|6666666.229899.peg.1714 CDS CP012959.1 1690524 1690351 -3 - 174 hypothetical protein - none -
fig|6666666.229899.peg.1715 CDS CP012959.1 1692487 1690562 -1 - 1926 Predicted P-loop ATPase fused to an acetyltransferase COG1444 tRNA modification Archaea;
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229899.peg.1716 CDS CP012959.1 1693192 1692491 -1 - 702 unknown - none -
fig|6666666.229899.peg.1717 CDS CP012959.1 1693818 1693354 -3 - 465 Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly CBSS-56780.10.peg.1536;
Glycyl-tRNA synthetase containing cluster;
tRNA-methylthiotransferase containing cluster
fig|6666666.229899.peg.1718 CDS CP012959.1 1694054 1693806 -2 - 249 Phosphate starvation-inducible protein PhoH, predicted ATPase CBSS-56780.10.peg.1536;
CBSS-56780.10.peg.1536;
Glycyl-tRNA synthetase containing cluster;
Phosphate metabolism;
Phosphate metabolism;
tRNA-methylthiotransferase containing cluster;
tRNA-methylthiotransferase containing cluster
fig|6666666.229899.peg.1719 CDS CP012959.1 1694574 1694801 3 + 228 Flp pilus assembly protein, pilin Flp Widespread colonization island
fig|6666666.229899.peg.1720 CDS CP012959.1 1695241 1695567 1 + 327 Type IV prepilin peptidase TadV/CpaA Widespread colonization island
fig|6666666.229899.peg.1721 CDS CP012959.1 1695682 1696443 1 + 762 Flp pilus assembly protein RcpC/CpaB Widespread colonization island
fig|6666666.229899.peg.1722 CDS CP012959.1 1696445 1697827 2 + 1383 Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly Widespread colonization island
fig|6666666.229899.peg.1723 CDS CP012959.1 1697824 1698327 1 + 504 Flp pilus assembly protein RcpB Widespread colonization island
fig|6666666.229899.peg.1724 CDS CP012959.1 1698343 1699467 1 + 1125 Type II/IV secretion system ATPase TadZ/CpaE, associated with Flp pilus assembly Widespread colonization island
fig|6666666.229899.peg.1725 CDS CP012959.1 1699481 1700761 2 + 1281 Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily Widespread colonization island
fig|6666666.229899.peg.1726 CDS CP012959.1 1700761 1701648 1 + 888 Flp pilus assembly protein TadB Widespread colonization island
fig|6666666.229899.peg.1727 CDS CP012959.1 1701645 1702511 3 + 867 Type II/IV secretion system protein TadC, associated with Flp pilus assembly Widespread colonization island
fig|6666666.229899.peg.1728 CDS CP012959.1 1702501 1703262 1 + 762 Flp pilus assembly protein TadD, contains TPR repeat Widespread colonization island
fig|6666666.229899.peg.1729 CDS CP012959.1 1703276 1703851 2 + 576 Flp pilus assembly membrane protein TadE Widespread colonization island
fig|6666666.229899.peg.1730 CDS CP012959.1 1703917 1704495 1 + 579 Flp pilus assembly surface protein TadF, ATP/GTP-binding motif Widespread colonization island
fig|6666666.229899.peg.1731 CDS CP012959.1 1704512 1706089 2 + 1578 Protein TadG, associated with Flp pilus assembly Widespread colonization island
fig|6666666.229899.peg.1732 CDS CP012959.1 1706835 1706969 3 + 135 hypothetical protein - none -
fig|6666666.229899.peg.1733 CDS CP012959.1 1707361 1707501 1 + 141 Mobile element protein - none -
fig|6666666.229899.peg.1734 CDS CP012959.1 1707584 1707724 2 + 141 Mobile element protein - none -
fig|6666666.229899.peg.1735 CDS CP012959.1 1707863 1708012 2 + 150 Mobile element protein - none -
fig|6666666.229899.peg.1736 CDS CP012959.1 1708750 1708241 -1 - 510 Mobile element protein - none -
fig|6666666.229899.peg.1737 CDS CP012959.1 1709169 1708747 -3 - 423 Mobile element protein - none -
fig|6666666.229899.peg.1738 CDS CP012959.1 1709499 1710128 3 + 630 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) - none -
fig|6666666.229899.peg.1739 CDS CP012959.1 1711629 1711405 -3 - 225 hypothetical protein - none -
fig|6666666.229899.peg.1740 CDS CP012959.1 1712150 1711824 -2 - 327 NAD(P)H oxidoreductase YRKL (EC 1.6.99.-) @ Putative NADPH-quinone reductase (modulator of drug activity B) @ Flavodoxin 2 Flavodoxin;
Flavodoxin
fig|6666666.229899.peg.1741 CDS CP012959.1 1712390 1712791 2 + 402 LysR family regulatory protein CidR Murein hydrolase regulation and cell death
fig|6666666.229899.peg.1742 CDS CP012959.1 1712937 1712800 -3 - 138 hypothetical protein - none -
fig|6666666.229899.peg.1743 CDS CP012959.1 1713274 1712996 -1 - 279 hypothetical protein - none -
fig|6666666.229899.peg.1744 CDS CP012959.1 1714960 1713296 -1 - 1665 PTS system, fructose-specific IIB component (EC 2.7.1.69) / PTS system, fructose-specific IIC component (EC 2.7.1.69) Fructose utilization;
Fructose utilization
fig|6666666.229899.peg.1745 CDS CP012959.1 1715906 1714965 -2 - 942 1-phosphofructokinase (EC 2.7.1.56) Fructose utilization
fig|6666666.229899.peg.1746 CDS CP012959.1 1717438 1715909 -1 - 1530 Fructose-specific phosphocarrier protein HPr (EC 2.7.1.69) / PTS system, fructose-specific IIA component (EC 2.7.1.69) Fructose utilization;
Fructose utilization
fig|6666666.229899.peg.1747 CDS CP012959.1 1718080 1717550 -1 - 531 ATPases involved in chromosome partitioning - none -
fig|6666666.229899.peg.1748 CDS CP012959.1 1718763 1718179 -3 - 585 Molybdopterin-guanine dinucleotide biosynthesis protein MobA Molybdenum cofactor biosynthesis;
ar-431-EC Molybdopterin-guanine dinucleotide biosynthesis
fig|6666666.229899.peg.1749 CDS CP012959.1 1718847 1719113 3 + 267 Protein yihD - none -
fig|6666666.229899.peg.1750 CDS CP012959.1 1719132 1719749 3 + 618 Periplasmic thiol:disulfide interchange protein DsbA Biogenesis of c-type cytochromes;
Periplasmic disulfide interchange
fig|6666666.229899.peg.1751 CDS CP012959.1 1719809 1720138 2 + 330 Protein yifE - none -
fig|6666666.229899.peg.1752 CDS CP012959.1 1720208 1721305 2 + 1098 tRNA (uracil(54)-C5)-methyltransferase (EC 2.1.1.35) RNA methylation;
tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229899.peg.1753 CDS CP012959.1 1721307 1722065 3 + 759 rRNA small subunit methyltransferase J - none -
fig|6666666.229899.peg.1754 CDS CP012959.1 1722157 1722492 1 + 336 hypothetical protein - none -
fig|6666666.229899.peg.1755 CDS CP012959.1 1722547 1723920 1 + 1374 hypothetical protein - none -
fig|6666666.229899.peg.1756 CDS CP012959.1 1723922 1725241 2 + 1320 hypothetical protein - none -
fig|6666666.229899.peg.1757 CDS CP012959.1 1725967 1726194 1 + 228 hypothetical protein - none -
fig|6666666.229899.peg.1758 CDS CP012959.1 1726838 1729438 2 + 2601 DNA mismatch repair protein MutS DNA repair, bacterial MutL-MutS system;
DNA repair system including RecA, MutS and a hypothetical protein
fig|6666666.229899.peg.1759 CDS CP012959.1 1730462 1729644 -2 - 819 HMP-PP hydrolase (pyridoxal phosphatase) Cof, detected in genetic screen for thiamin metabolic genes (PMID:15292217) - none -
fig|6666666.229899.peg.1760 CDS CP012959.1 1732311 1730656 -3 - 1656 Lysophospholipase (EC 3.1.1.5) Triacylglycerol metabolism
fig|6666666.229899.peg.1761 CDS CP012959.1 1732400 1732528 2 + 129 hypothetical protein - none -
fig|6666666.229899.peg.1762 CDS CP012959.1 1733039 1732500 -2 - 540 Metal-dependent hydrolase - none -
fig|6666666.229899.peg.1763 CDS CP012959.1 1734550 1733210 -1 - 1341 FIG00782214: hypothetical protein - none -
fig|6666666.229899.peg.1764 CDS CP012959.1 1735582 1734575 -1 - 1008 Low-affinity gluconate/H+ symporter GntU D-gluconate and ketogluconates metabolism
fig|6666666.229899.peg.1765 CDS CP012959.1 1735926 1735612 -3 - 315 Low-affinity gluconate/H+ symporter GntU D-gluconate and ketogluconates metabolism
fig|6666666.229899.peg.1766 CDS CP012959.1 1736791 1736015 -1 - 777 Hydroxypyruvate isomerase (EC 5.3.1.22) Glycerate metabolism
fig|6666666.229899.peg.1767 CDS CP012959.1 1737426 1736794 -3 - 633 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases - none -
fig|6666666.229899.peg.1768 CDS CP012959.1 1738667 1737423 -2 - 1245 Predicted pyridoxine biosynthesis protein (probably from glycolaldehide) - none -
fig|6666666.229899.peg.1769 CDS CP012959.1 1739491 1738670 -1 - 822 D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) Polyhydroxybutyrate metabolism
fig|6666666.229899.peg.1770 CDS CP012959.1 1739768 1740526 2 + 759 Transcriptional regulators of sugar metabolism - none -
fig|6666666.229899.peg.1771 CDS CP012959.1 1740602 1740940 2 + 339 Nitrogen regulatory protein P-II Ammonia assimilation
fig|6666666.229899.peg.1772 CDS CP012959.1 1741079 1742122 2 + 1044 FIG004453: protein YceG like CBSS-323097.3.peg.2594;
Cluster containing Alanyl-tRNA synthetase;
tRNA modification Bacteria
fig|6666666.229899.peg.1773 CDS CP012959.1 1742124 1742756 3 + 633 Thymidylate kinase (EC 2.7.4.9) pyrimidine conversions
fig|6666666.229899.peg.1774 CDS CP012959.1 1742753 1743736 2 + 984 DNA polymerase III delta prime subunit (EC 2.7.7.7) - none -
fig|6666666.229899.peg.1775 CDS CP012959.1 1743740 1744522 2 + 783 Putative deoxyribonuclease YcfH YcfH
fig|6666666.229899.peg.1776 CDS CP012959.1 1744554 1745078 3 + 525 FIG00696143: hypothetical protein - none -
fig|6666666.229899.peg.1777 CDS CP012959.1 1745169 1746485 3 + 1317 Magnesium and cobalt efflux protein CorC CBSS-56780.10.peg.1536;
Copper homeostasis: copper tolerance;
Glycyl-tRNA synthetase containing cluster;
Magnesium transport;
tRNA-methylthiotransferase containing cluster
fig|6666666.229899.peg.1778 CDS CP012959.1 1746901 1746716 -1 - 186 hypothetical protein - none -
fig|6666666.229899.peg.1779 CDS CP012959.1 1747830 1747108 -3 - 723 hypothetical protein - none -
fig|6666666.229899.peg.1780 CDS CP012959.1 1750043 1747866 -2 - 2178 Probable phospholipase protein - none -
fig|6666666.229899.peg.1781 CDS CP012959.1 1750670 1750047 -2 - 624 VgrG-3 protein - none -
fig|6666666.229899.peg.1782 CDS CP012959.1 1751584 1750901 -1 - 684 Phosphoglycerate mutase (EC 5.4.2.1) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis;
Phosphoglycerate mutase protein family
fig|6666666.229899.peg.1783 CDS CP012959.1 1751891 1753549 2 + 1659 Phosphoglucosamine mutase (EC 5.4.2.10) Sialic Acid Metabolism;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229899.peg.1784 CDS CP012959.1 1753799 1755016 2 + 1218 Periplasmic septal ring factor with murein hydrolase activity EnvC/YibP CBSS-224911.1.peg.435;
Glutaredoxins;
Phosphoglycerate mutase protein family
fig|6666666.229899.peg.1785 CDS CP012959.1 1755013 1755840 1 + 828 Putative periplasmic protein YibQ, distant homology with nucleoside diphosphatase and polysaccharide deacetylase CBSS-224911.1.peg.435;
Phosphoglycerate mutase protein family
fig|6666666.229899.peg.1786 CDS CP012959.1 1757387 1755852 -2 - 1536 MG(2+) CHELATASE FAMILY PROTEIN / ComM-related protein - none -
fig|6666666.229899.peg.1787 CDS CP012959.1 1758116 1757502 -2 - 615 GTP-binding protein EngB Universal GTPases
fig|6666666.229899.peg.1788 CDS CP012959.1 1758126 1758239 3 + 114 hypothetical protein - none -
fig|6666666.229899.peg.1789 CDS CP012959.1 1758249 1759124 3 + 876 Membrane protein LAPB - none -
fig|6666666.229899.peg.1790 CDS CP012959.1 1759696 1759220 -1 - 477 tRNA (cytidine(34)-2@1-O)-methyltransferase (EC 2.1.1.207) Biotin synthesis cluster;
RNA methylation
fig|6666666.229899.peg.1791 CDS CP012959.1 1760312 1759815 -2 - 498 Phospholipid-binding protein - none -
fig|6666666.229899.peg.1792 CDS CP012959.1 1761260 1760418 -2 - 843 Methionine ABC transporter substrate-binding protein Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229899.peg.1793 CDS CP012959.1 1761972 1761295 -3 - 678 Methionine ABC transporter permease protein Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229899.peg.1794 CDS CP012959.1 1762999 1761962 -1 - 1038 Methionine ABC transporter ATP-binding protein Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229899.peg.1795 CDS CP012959.1 1763195 1763752 2 + 558 D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase (EC 3.1.1.-) Capsular heptose biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.229899.peg.1797 CDS CP012959.1 1769611 1771023 1 + 1413 hypothetical protein - none -
fig|6666666.229899.peg.1798 CDS CP012959.1 1771113 1771262 3 + 150 hypothetical protein - none -
fig|6666666.229899.peg.1799 CDS CP012959.1 1771401 1773896 3 + 2496 hypothetical protein - none -
fig|6666666.229899.peg.1800 CDS CP012959.1 1774340 1774897 2 + 558 hypothetical protein - none -
fig|6666666.229899.peg.1801 CDS CP012959.1 1776638 1775229 -2 - 1410 Cysteinyl-tRNA synthetase (EC 6.1.1.16) tRNA aminoacylation, Cys
fig|6666666.229899.peg.1802 CDS CP012959.1 1776708 1777220 3 + 513 Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase;
Queuosine-Archaeosine Biosynthesis
fig|6666666.229899.peg.1803 CDS CP012959.1 1777314 1777469 3 + 156 hypothetical protein - none -
fig|6666666.229899.peg.1804 CDS CP012959.1 1777462 1777743 1 + 282 hypothetical protein - none -
fig|6666666.229899.peg.1805 CDS CP012959.1 1777746 1778534 3 + 789 Putative deoxyribonuclease YjjV Deoxyribose and Deoxynucleoside Catabolism;
YcfH
fig|6666666.229899.peg.1806 CDS CP012959.1 1779028 1778561 -1 - 468 Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) Ribonucleotide reduction
fig|6666666.229899.peg.1807 CDS CP012959.1 1779449 1779330 -2 - 120 hypothetical protein - none -
fig|6666666.229899.peg.1808 CDS CP012959.1 1781756 1779630 -2 - 2127 Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) Ribonucleotide reduction
fig|6666666.229899.peg.1809 CDS CP012959.1 1786598 1782009 -2 - 4590 Autotransporter adhesin - none -
fig|6666666.229899.peg.1810 CDS CP012959.1 1787376 1787260 -3 - 117 hypothetical protein - none -
fig|6666666.229899.peg.1811 CDS CP012959.1 1789180 1787393 -1 - 1788 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) Biotin biosynthesis;
Biotin synthesis cluster
fig|6666666.229899.peg.1812 CDS CP012959.1 1789414 1789235 -1 - 180 hypothetical protein - none -
fig|6666666.229899.peg.1813 CDS CP012959.1 1789379 1792855 2 + 3477 DNA polymerase III alpha subunit (EC 2.7.7.7) - none -
fig|6666666.229899.peg.1814 CDS CP012959.1 1794114 1792930 -3 - 1185 hypothetical protein - none -
fig|6666666.229899.peg.1815 CDS CP012959.1 1796327 1794093 -2 - 2235 hypothetical protein - none -
fig|6666666.229899.peg.1816 CDS CP012959.1 1797645 1796320 -3 - 1326 hypothetical protein - none -
fig|6666666.229899.peg.1817 CDS CP012959.1 1799376 1797922 -3 - 1455 Catalase (EC 1.11.1.6) Oxidative stress;
Protection from Reactive Oxygen Species
fig|6666666.229899.peg.1818 CDS CP012959.1 1801215 1799866 -3 - 1350 NADP-specific glutamate dehydrogenase (EC 1.4.1.4) Arginine and Ornithine Degradation;
Glutamate dehydrogenases;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Proline Synthesis
fig|6666666.229899.peg.1819 CDS CP012959.1 1802893 1801517 -1 - 1377 Argininosuccinate lyase (EC 4.3.2.1) - none -
fig|6666666.229899.peg.1820 CDS CP012959.1 1803794 1803006 -2 - 789 Mannosyltransferase OCH1 and related enzymes - none -
fig|6666666.229899.peg.1821 CDS CP012959.1 1804485 1805930 3 + 1446 Glutamyl-tRNA synthetase (EC 6.1.1.17) Heme and Siroheme Biosynthesis;
tRNA aminoacylation, Glu and Gln
fig|6666666.229899.peg.1822 CDS CP012959.1 1807154 1806108 -2 - 1047 Phage integrase - none -
fig|6666666.229899.peg.1823 CDS CP012959.1 1808416 1807760 -1 - 657 hypothetical protein - none -
fig|6666666.229899.peg.1824 CDS CP012959.1 1809799 1809176 -1 - 624 hypothetical protein - none -
fig|6666666.229899.peg.1825 CDS CP012959.1 1810689 1809796 -3 - 894 hypothetical protein - none -
fig|6666666.229899.peg.1826 CDS CP012959.1 1811000 1810701 -2 - 300 Phage protein - none -
fig|6666666.229899.peg.1827 CDS CP012959.1 1811242 1811003 -1 - 240 Phage protein - none -
fig|6666666.229899.peg.1828 CDS CP012959.1 1811522 1811247 -2 - 276 hypothetical protein - none -
fig|6666666.229899.peg.1829 CDS CP012959.1 1812265 1811609 -1 - 657 Phage Rha protein - none -
fig|6666666.229899.peg.1830 CDS CP012959.1 1812933 1812709 -3 - 225 hypothetical protein - none -
fig|6666666.229899.peg.1831 CDS CP012959.1 1813440 1813027 -3 - 414 hypothetical protein - none -
fig|6666666.229899.peg.1832 CDS CP012959.1 1813619 1813440 -2 - 180 hypothetical protein - none -
fig|6666666.229899.peg.1833 CDS CP012959.1 1813960 1813772 -1 - 189 hypothetical protein - none -
fig|6666666.229899.peg.1834 CDS CP012959.1 1814079 1813942 -3 - 138 FIG00697614: hypothetical protein - none -
fig|6666666.229899.peg.1835 CDS CP012959.1 1814703 1815170 3 + 468 Phage protein - none -
fig|6666666.229899.peg.1836 CDS CP012959.1 1816855 1815968 -1 - 888 hypothetical protein - none -
fig|6666666.229899.peg.1837 CDS CP012959.1 1817629 1816913 -1 - 717 Transcriptional regulator - none -
fig|6666666.229899.peg.1838 CDS CP012959.1 1817739 1817927 3 + 189 putative Cro protein - none -
fig|6666666.229899.peg.1839 CDS CP012959.1 1817999 1818244 2 + 246 Phage protein - none -
fig|6666666.229899.peg.1840 CDS CP012959.1 1818296 1819015 2 + 720 Phage antirepressor protein - none -
fig|6666666.229899.peg.1841 CDS CP012959.1 1819015 1819173 1 + 159 Phage protein - none -
fig|6666666.229899.peg.1842 CDS CP012959.1 1819170 1819970 3 + 801 Primosomal protein I - none -
fig|6666666.229899.peg.1843 CDS CP012959.1 1819970 1821427 2 + 1458 Replicative DNA helicase (EC 3.6.1.-) - none -
fig|6666666.229899.peg.1844 CDS CP012959.1 1821430 1821924 1 + 495 DNA adenine methyltransferase, phage-associated Phage DNA synthesis
fig|6666666.229899.peg.1845 CDS CP012959.1 1822003 1822428 1 + 426 Phage NinB DNA recombination - none -
fig|6666666.229899.peg.1846 CDS CP012959.1 1822407 1822652 3 + 246 Phage protein - none -
fig|6666666.229899.peg.1847 CDS CP012959.1 1822652 1822831 2 + 180 hypothetical protein - none -
fig|6666666.229899.peg.1848 CDS CP012959.1 1822818 1823021 3 + 204 Phage protein - none -
fig|6666666.229899.peg.1849 CDS CP012959.1 1823021 1823590 2 + 570 Phage NinG rap recombination - none -
fig|6666666.229899.peg.1850 CDS CP012959.1 1823767 1823961 1 + 195 anti-termination protein - none -
fig|6666666.229899.peg.1851 CDS CP012959.1 1824251 1825147 2 + 897 Phage tail fibers Phage tail fiber proteins
fig|6666666.229899.peg.1852 CDS CP012959.1 1825922 1826122 2 + 201 Phage protein - none -
fig|6666666.229899.peg.1853 CDS CP012959.1 1826465 1827046 2 + 582 Lytic enzyme - none -
fig|6666666.229899.peg.1854 CDS CP012959.1 1827049 1827381 1 + 333 hypothetical protein - none -
fig|6666666.229899.peg.1855 CDS CP012959.1 1827578 1827844 2 + 267 Phage protein - none -
fig|6666666.229899.peg.1856 CDS CP012959.1 1828001 1828561 2 + 561 Phage terminase, small subunit Phage packaging machinery
fig|6666666.229899.peg.1857 CDS CP012959.1 1828587 1829969 3 + 1383 Phage terminase, large subunit Phage packaging machinery
fig|6666666.229899.peg.1858 CDS CP012959.1 1829971 1831284 1 + 1314 Phage protein - none -
fig|6666666.229899.peg.1859 CDS CP012959.1 1831385 1833607 2 + 2223 phage putative head morphogenesis protein, SPP1 gp7 family - none -
fig|6666666.229899.peg.1860 CDS CP012959.1 1834239 1835351 3 + 1113 Uncharacterized protein conserved in bacteria - none -
fig|6666666.229899.peg.1861 CDS CP012959.1 1835365 1835814 1 + 450 hypothetical protein - none -
fig|6666666.229899.peg.1862 CDS CP012959.1 1835826 1836740 3 + 915 hypothetical protein - none -
fig|6666666.229899.peg.1863 CDS CP012959.1 1836751 1837110 1 + 360 hypothetical protein - none -
fig|6666666.229899.peg.1864 CDS CP012959.1 1837111 1837557 1 + 447 Phage-related protein - none -
fig|6666666.229899.peg.1865 CDS CP012959.1 1837554 1837925 3 + 372 hypothetical protein - none -
fig|6666666.229899.peg.1866 CDS CP012959.1 1838167 1838352 1 + 186 Phage protein - none -
fig|6666666.229899.peg.1867 CDS CP012959.1 1838357 1839865 2 + 1509 Phage-related protein - none -
fig|6666666.229899.peg.1868 CDS CP012959.1 1839915 1840346 3 + 432 FIG01217275: hypothetical protein - none -
fig|6666666.229899.peg.1869 CDS CP012959.1 1840346 1840765 2 + 420 hypothetical protein - none -
fig|6666666.229899.peg.1870 CDS CP012959.1 1840916 1843024 2 + 2109 Phage tape measure protein Phage tail proteins
fig|6666666.229899.peg.1871 CDS CP012959.1 1843028 1843795 2 + 768 FIG01218156: hypothetical protein - none -
fig|6666666.229899.peg.1872 CDS CP012959.1 1843923 1844120 3 + 198 Phage protein - none -
fig|6666666.229899.peg.1873 CDS CP012959.1 1844461 1845261 1 + 801 FIG00643583: hypothetical protein - none -
fig|6666666.229899.peg.1874 CDS CP012959.1 1845258 1845902 3 + 645 Phage baseplate (uncharacterized for now) Phage baseplate proteins
fig|6666666.229899.peg.1875 CDS CP012959.1 1845899 1846258 2 + 360 phage-related protein - none -
fig|6666666.229899.peg.1876 CDS CP012959.1 1846289 1847431 2 + 1143 Arginyl-tRNA synthetase (EC 6.1.1.19) tRNA aminoacylation, Arg
fig|6666666.229899.peg.1877 CDS CP012959.1 1847431 1848018 1 + 588 FIG00696337: hypothetical protein - none -
fig|6666666.229899.peg.1878 CDS CP012959.1 1848029 1849513 2 + 1485 Phage tail fibers Phage tail fiber proteins
fig|6666666.229899.peg.1879 CDS CP012959.1 1849519 1850124 1 + 606 Phage tail fibers Phage tail fiber proteins
fig|6666666.229899.peg.1880 CDS CP012959.1 1850105 1850365 2 + 261 Phage tail fibers Phage tail fiber proteins
fig|6666666.229899.peg.1881 CDS CP012959.1 1850902 1851111 1 + 210 Cold shock protein CspA Cold shock, CspA family of proteins
fig|6666666.229899.peg.1882 CDS CP012959.1 1852142 1851210 -2 - 933 Ribokinase (EC 2.7.1.15) D-ribose utilization;
Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.229899.peg.1883 CDS CP012959.1 1853096 1852224 -2 - 873 Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229899.peg.1884 CDS CP012959.1 1854083 1853118 -2 - 966 Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229899.peg.1885 CDS CP012959.1 1855588 1854080 -1 - 1509 Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229899.peg.1886 CDS CP012959.1 1856018 1855599 -2 - 420 Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229899.peg.1887 CDS CP012959.1 1856238 1856837 3 + 600 Adenosine (5@1)-pentaphospho-(5@1@1)-adenosine pyrophosphohydrolase (EC 3.6.1.-) CBSS-224911.1.peg.435;
CBSS-364106.7.peg.3204;
Nudix proteins (nucleoside triphosphate hydrolases);
Phosphoglycerate mutase protein family
fig|6666666.229899.peg.1888 CDS CP012959.1 1856840 1857637 2 + 798 Protein of unknown function DUF81 - none -
fig|6666666.229899.peg.1889 CDS CP012959.1 1857646 1858443 1 + 798 Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-) Lipoprotein Biosynthesis
fig|6666666.229899.peg.1890 CDS CP012959.1 1858440 1859291 3 + 852 Thymidylate synthase (EC 2.1.1.45) Folate Biosynthesis;
pyrimidine conversions
fig|6666666.229899.peg.1891 CDS CP012959.1 1859616 1860143 3 + 528 tRNA-specific adenosine-34 deaminase (EC 3.5.4.-) tRNA modification Bacteria;
tRNA processing;
tRNAmodification position 34
fig|6666666.229899.peg.1892 CDS CP012959.1 1860767 1860369 -2 - 399 hypothetical protein - none -
fig|6666666.229899.peg.1893 CDS CP012959.1 1861262 1861077 -2 - 186 hypothetical protein - none -
fig|6666666.229899.peg.1894 CDS CP012959.1 1862191 1861469 -1 - 723 miscellaneous; hypothetical/partial homology - none -
fig|6666666.229899.peg.1895 CDS CP012959.1 1863441 1862227 -3 - 1215 Probable phospholipase protein - none -
fig|6666666.229899.peg.1896 CDS CP012959.1 1864766 1863864 -2 - 903 hypothetical protein - none -
fig|6666666.229899.peg.1897 CDS CP012959.1 1866844 1864751 -1 - 2094 VgrG-3 protein - none -
fig|6666666.229899.peg.1898 CDS CP012959.1 1867011 1866841 -3 - 171 hypothetical protein - none -
fig|6666666.229899.peg.1899 CDS CP012959.1 1868404 1867292 -1 - 1113 Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like Scaffold proteins for [4Fe-4S] cluster assembly (MRP family)
fig|6666666.229899.peg.1900 CDS CP012959.1 1868577 1870637 3 + 2061 Methionyl-tRNA synthetase (EC 6.1.1.10) Scaffold proteins for [4Fe-4S] cluster assembly (MRP family);
tRNA aminoacylation, Met
fig|6666666.229899.peg.1901 CDS CP012959.1 1870965 1870771 -3 - 195 Believed to be involved in assembly of Fe-S clusters tRNA modification Bacteria
fig|6666666.229899.peg.1902 CDS CP012959.1 1871306 1870965 -2 - 342 Ferredoxin, 2Fe-2S Alanine biosynthesis;
Soluble cytochromes and functionally related electron carriers;
tRNA modification Bacteria
fig|6666666.229899.peg.1903 CDS CP012959.1 1873177 1871318 -1 - 1860 Chaperone protein HscA Alanine biosynthesis;
Protein chaperones;
tRNA modification Bacteria
fig|6666666.229899.peg.1904 CDS CP012959.1 1873719 1873198 -3 - 522 Chaperone protein HscB Protein chaperones;
tRNA modification Bacteria
fig|6666666.229899.peg.1905 CDS CP012959.1 1874054 1873731 -2 - 324 Iron binding protein IscA for iron-sulfur cluster assembly Alanine biosynthesis;
tRNA modification Bacteria
fig|6666666.229899.peg.1906 CDS CP012959.1 1874569 1874186 -1 - 384 Iron-sulfur cluster assembly scaffold protein IscU Alanine biosynthesis;
tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229899.peg.1907 CDS CP012959.1 1875843 1874629 -3 - 1215 Cysteine desulfurase (EC 2.8.1.7), IscS subfamily Alanine biosynthesis;
Thiamin biosynthesis;
mnm5U34 biosynthesis bacteria;
tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229899.peg.1908 CDS CP012959.1 1876370 1875897 -2 - 474 Iron-sulfur cluster regulator IscR Alanine biosynthesis;
Rrf2 family transcriptional regulators
fig|6666666.229899.peg.1909 CDS CP012959.1 1877172 1876432 -3 - 741 tRNA:Cm32/Um32 methyltransferase RNA methylation;
tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229899.peg.1910 CDS CP012959.1 1877323 1878123 1 + 801 Inositol-1-monophosphatase (EC 3.1.3.25) - none -
fig|6666666.229899.peg.1911 CDS CP012959.1 1878437 1878279 -2 - 159 hypothetical protein - none -
fig|6666666.229899.peg.1912 CDS CP012959.1 1878963 1878814 -3 - 150 hypothetical protein - none -
fig|6666666.229899.peg.1913 CDS CP012959.1 1879418 1879218 -2 - 201 Mobile element protein - none -
fig|6666666.229899.peg.1914 CDS CP012959.1 1879545 1879420 -3 - 126 Mobile element protein - none -
fig|6666666.229899.peg.1915 CDS CP012959.1 1879862 1881274 2 + 1413 hypothetical protein - none -
fig|6666666.229899.peg.1916 CDS CP012959.1 1881312 1884230 3 + 2919 hypothetical protein - none -
fig|6666666.229899.peg.1917 CDS CP012959.1 1884234 1884815 3 + 582 hypothetical protein - none -
fig|6666666.229899.peg.1918 CDS CP012959.1 1884846 1885409 3 + 564 hypothetical protein - none -
fig|6666666.229899.peg.1919 CDS CP012959.1 1885748 1885557 -2 - 192 Mobile element protein - none -
fig|6666666.229899.peg.1920 CDS CP012959.1 1885738 1885863 1 + 126 hypothetical protein - none -
fig|6666666.229899.peg.1921 CDS CP012959.1 1886075 1886281 2 + 207 Tfp pilus assembly protein, pilus retraction ATPase PilT - none -
fig|6666666.229899.peg.1922 CDS CP012959.1 1886724 1886960 3 + 237 Cystathionine gamma-synthase (EC 2.5.1.48) Methionine Biosynthesis
fig|6666666.229899.peg.1923 CDS CP012959.1 1886954 1887892 2 + 939 Cystathionine gamma-synthase (EC 2.5.1.48) Methionine Biosynthesis
fig|6666666.229899.peg.1924 CDS CP012959.1 1887916 1888911 1 + 996 D-lactate dehydrogenase (EC 1.1.1.28) Fermentations: Lactate;
Fermentations: Mixed acid
fig|6666666.229899.peg.1925 CDS CP012959.1 1889119 1889334 1 + 216 Thioredoxin - none -
fig|6666666.229899.peg.1926 CDS CP012959.1 1890492 1889533 -3 - 960 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) RNA pseudouridine syntheses;
Ribosome biogenesis bacterial
fig|6666666.229899.peg.1927 CDS CP012959.1 1890724 1890602 -1 - 123 hypothetical protein - none -
fig|6666666.229899.peg.1928 CDS CP012959.1 1890828 1890962 3 + 135 hypothetical protein - none -
fig|6666666.229899.peg.1929 CDS CP012959.1 1890959 1893850 2 + 2892 Ribonuclease E (EC 3.1.26.12) RNA processing and degradation, bacterial;
Ribosome biogenesis bacterial
fig|6666666.229899.peg.1930 CDS CP012959.1 1894678 1894289 -1 - 390 INTEGRAL MEMBRANE PROTEIN (Rhomboid family) - none -
fig|6666666.229899.peg.1931 CDS CP012959.1 1896470 1894758 -2 - 1713 Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8) Biogenesis of c-type cytochromes;
Periplasmic disulfide interchange
fig|6666666.229899.peg.1932 CDS CP012959.1 1896691 1897260 1 + 570 Lysine decarboxylase family - none -
fig|6666666.229899.peg.1933 CDS CP012959.1 1897471 1897737 1 + 267 LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-independent Ribosome LSU bacterial;
Ribosome LSU bacterial
fig|6666666.229899.peg.1934 CDS CP012959.1 1897747 1897887 1 + 141 LSU ribosomal protein L36p Ribosome LSU bacterial
fig|6666666.229899.peg.1935 CDS CP012959.1 1898149 1898856 1 + 708 Aerobic respiration control protein arcA - none -
fig|6666666.229899.peg.1936 CDS CP012959.1 1899962 1898964 -2 - 999 Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229899.peg.1937 CDS CP012959.1 1900942 1899959 -1 - 984 Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229899.peg.1938 CDS CP012959.1 1901890 1900952 -1 - 939 Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229899.peg.1939 CDS CP012959.1 1902046 1901900 -1 - 147 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229899.peg.1940 CDS CP012959.1 1902182 1902015 -2 - 168 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229899.peg.1941 CDS CP012959.1 1902820 1902158 -1 - 663 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229899.peg.1942 CDS CP012959.1 1904546 1902963 -2 - 1584 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229899.peg.1943 CDS CP012959.1 1904569 1904706 1 + 138 hypothetical protein - none -
fig|6666666.229899.peg.1944 CDS CP012959.1 1904915 1905397 2 + 483 tmRNA-binding protein SmpB Heat shock dnaK gene cluster extended;
Translation termination factors bacterial
fig|6666666.229899.peg.1945 CDS CP012959.1 1905349 1905468 1 + 120 tmRNA-binding protein SmpB Heat shock dnaK gene cluster extended;
Translation termination factors bacterial
fig|6666666.229899.peg.1946 CDS CP012959.1 1906640 1905465 -2 - 1176 GTP-binding protein Obg CBSS-176279.3.peg.868;
Universal GTPases
fig|6666666.229899.peg.1947 CDS CP012959.1 1907594 1906677 -2 - 918 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229899.peg.1948 CDS CP012959.1 1908604 1907672 -1 - 933 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229899.peg.1949 CDS CP012959.1 1908932 1908675 -2 - 258 LSU ribosomal protein L27p CBSS-176279.3.peg.868;
Ribosome LSU bacterial
fig|6666666.229899.peg.1950 CDS CP012959.1 1909264 1908953 -1 - 312 LSU ribosomal protein L21p CBSS-176279.3.peg.868;
Ribosome LSU bacterial
fig|6666666.229899.peg.1951 CDS CP012959.1 1909530 1910501 3 + 972 Octaprenyl diphosphate synthase (EC 2.5.1.90) Isoprenoinds for Quinones;
Polyprenyl Diphosphate Biosynthesis
fig|6666666.229899.peg.1952 CDS CP012959.1 1910503 1911234 1 + 732 FIG053235: Diacylglucosamine hydrolase like Llipid A biosynthesis cluster
fig|6666666.229899.peg.1953 CDS CP012959.1 1911399 1911250 -3 - 150 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-) CBSS-87626.3.peg.3639;
Ubiquinone Biosynthesis
fig|6666666.229899.peg.1954 CDS CP012959.1 1911628 1911509 -1 - 120 hypothetical protein - none -
fig|6666666.229899.peg.1955 CDS CP012959.1 1911736 1913160 1 + 1425 tRNA-i(6)A37 methylthiotransferase Methylthiotransferases;
tRNA-methylthiotransferase containing cluster;
tRNA modification Archaea;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229899.peg.1956 CDS CP012959.1 1913784 1913218 -3 - 567 Primosomal replication protein N@1@1 - none -
fig|6666666.229899.peg.1957 CDS CP012959.1 1915200 1913848 -3 - 1353 Histidine permease YuiF - none -
fig|6666666.229899.peg.1958 CDS CP012959.1 1916205 1915552 -3 - 654 Ribonuclease T (EC 3.1.13.-) tRNA processing
fig|6666666.229899.peg.1959 CDS CP012959.1 1916699 1916292 -2 - 408 Lactoylglutathione lyase (EC 4.4.1.5) Glutathione: Non-redox reactions;
Methylglyoxal Metabolism
fig|6666666.229899.peg.1960 CDS CP012959.1 1918810 1916858 -1 - 1953 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229899.peg.1961 CDS CP012959.1 1919211 1920542 3 + 1332 Glycerol-3-phosphate transporter - none -
fig|6666666.229899.peg.1962 CDS CP012959.1 1920685 1923252 1 + 2568 FIG00362583: hypothetical protein - none -
fig|6666666.229899.peg.1963 CDS CP012959.1 1924057 1923332 -1 - 726 tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229899.peg.1964 CDS CP012959.1 1924656 1924129 -3 - 528 membrane protein, putative - none -
fig|6666666.229899.peg.1965 CDS CP012959.1 1924864 1926642 1 + 1779 Aspartyl-tRNA synthetase (EC 6.1.1.12) tRNA aminoacylation, Asp and Asn
fig|6666666.229899.peg.1966 CDS CP012959.1 1927647 1926841 -3 - 807 Mobile element protein - none -
fig|6666666.229899.peg.1967 CDS CP012959.1 1928018 1927644 -2 - 375 hypothetical protein - none -
fig|6666666.229899.peg.1968 CDS CP012959.1 1928292 1929560 3 + 1269 Mn2+ and Fe2+ transporters of the NRAMP family - none -
fig|6666666.229899.peg.1969 CDS CP012959.1 1929741 1930112 3 + 372 Dihydroneopterin triphosphate pyrophosphohydrolase type 2 (nudB) Folate Biosynthesis
fig|6666666.229899.peg.1970 CDS CP012959.1 1930146 1930886 3 + 741 FIG000859: hypothetical protein YebC Riboflavin, FMN and FAD metabolism in plants;
RuvABC plus a hypothetical
fig|6666666.229899.peg.1971 CDS CP012959.1 1930898 1931308 2 + 411 excinuclease ABC subunit A - none -
fig|6666666.229899.peg.1972 CDS CP012959.1 1931364 1931936 3 + 573 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) RuvABC plus a hypothetical
fig|6666666.229899.peg.1973 CDS CP012959.1 1932000 1932614 3 + 615 Holliday junction DNA helicase RuvA RuvABC plus a hypothetical
fig|6666666.229899.peg.1974 CDS CP012959.1 1932629 1933642 2 + 1014 Holliday junction DNA helicase RuvB RuvABC plus a hypothetical
fig|6666666.229899.peg.1975 CDS CP012959.1 1934007 1933696 -3 - 312 Chromosome segregation ATPases - none -
fig|6666666.229899.peg.1976 CDS CP012959.1 1934564 1936024 2 + 1461 Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229899.peg.1977 CDS CP012959.1 1936039 1937175 1 + 1137 Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229899.peg.1978 CDS CP012959.1 1937628 1937500 -3 - 129 hypothetical protein - none -
fig|6666666.229899.peg.1979 CDS CP012959.1 1937693 1938097 2 + 405 4-hydroxybenzoyl-CoA thioesterase family active site Ton and Tol transport systems
fig|6666666.229899.peg.1980 CDS CP012959.1 1938127 1938816 1 + 690 MotA/TolQ/ExbB proton channel family protein Ton and Tol transport systems
fig|6666666.229899.peg.1981 CDS CP012959.1 1938902 1939324 2 + 423 Tol biopolymer transport system, TolR protein Ton and Tol transport systems
fig|6666666.229899.peg.1982 CDS CP012959.1 1939341 1940489 3 + 1149 TolA protein Ton and Tol transport systems
fig|6666666.229899.peg.1983 CDS CP012959.1 1940524 1941804 1 + 1281 tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins Ton and Tol transport systems
fig|6666666.229899.peg.1984 CDS CP012959.1 1941819 1942286 3 + 468 18K peptidoglycan-associated outer membrane lipoprotein; Peptidoglycan-associated lipoprotein precursor; Outer membrane protein P6; OmpA/MotB precursor Ton and Tol transport systems
fig|6666666.229899.peg.1985 CDS CP012959.1 1942895 1943512 2 + 618 Type II secretory pathway, pseudopilin PulG - none -
fig|6666666.229899.peg.1986 CDS CP012959.1 1943526 1944242 3 + 717 Type II secretory pathway, component PulJ - none -
fig|6666666.229899.peg.1987 CDS CP012959.1 1944239 1944934 2 + 696 FIG00696574: hypothetical protein - none -
fig|6666666.229899.peg.1988 CDS CP012959.1 1944909 1945211 3 + 303 FIG00696353: hypothetical protein - none -
fig|6666666.229899.peg.1989 CDS CP012959.1 1945257 1948646 3 + 3390 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) DNA repair, bacterial RecBCD pathway
fig|6666666.229899.peg.1990 CDS CP012959.1 1949091 1948648 -3 - 444 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Ribosome biogenesis bacterial;
YrdC-YciO-Sua5 protein family
fig|6666666.229899.peg.1991 CDS CP012959.1 1949550 1949101 -3 - 450 DNA polymerase III psi subunit (EC 2.7.7.7) - none -
fig|6666666.229899.peg.1992 CDS CP012959.1 1949606 1950610 2 + 1005 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) RNA methylation
fig|6666666.229899.peg.1993 CDS CP012959.1 1950697 1950846 1 + 150 hypothetical protein - none -
fig|6666666.229899.peg.1994 CDS CP012959.1 1950849 1950989 3 + 141 hypothetical protein - none -
fig|6666666.229899.peg.1995 CDS CP012959.1 1951226 1951768 2 + 543 hypothetical protein - none -
fig|6666666.229899.peg.1996 CDS CP012959.1 1951903 1953165 1 + 1263 Serine hydroxymethyltransferase (EC 2.1.2.1) 5-FCL-like protein;
Glycine Biosynthesis;
Glycine and Serine Utilization;
Serine-glyoxylate cycle;
Serine Biosynthesis;
YrdC-YciO-Sua5 protein family
fig|6666666.229899.peg.1997 CDS CP012959.1 1954272 1954778 3 + 507 RTX toxin activating lysine-acyltransferase (EC 2.3.1.-) - none -
fig|6666666.229899.peg.1998 CDS CP012959.1 1954791 1957958 3 + 3168 bifunctional hemolysin-adenylate cyclase precursor cAMP signaling in bacteria
fig|6666666.229899.peg.1999 CDS CP012959.1 1958027 1960150 2 + 2124 Methionine ABC transporter ATP-binding protein Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229899.peg.2000 CDS CP012959.1 1960165 1961598 1 + 1434 Microcin H47 secretion protein - none -
fig|6666666.229899.peg.2001 CDS CP012959.1 1962009 1963889 3 + 1881 PTS system, mannitol-specific IIC component (EC 2.7.1.69) / PTS system, mannitol-specific IIB component (EC 2.7.1.69) / PTS system, mannitol-specific IIA component (EC 2.7.1.69) Mannitol Utilization;
Mannitol Utilization;
Mannitol Utilization
fig|6666666.229899.peg.2002 CDS CP012959.1 1963967 1965115 2 + 1149 Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17) Mannitol Utilization
fig|6666666.229899.peg.2003 CDS CP012959.1 1965193 1965705 1 + 513 Mannitol operon repressor Mannitol Utilization
fig|6666666.229899.peg.2004 CDS CP012959.1 1966819 1965809 -1 - 1011 Myo-inositol 2-dehydrogenase 1 (EC 1.1.1.18) Inositol catabolism
fig|6666666.229899.peg.2005 CDS CP012959.1 1967718 1966822 -3 - 897 Inosose dehydratase (EC 4.2.1.44) Inositol catabolism
fig|6666666.229899.peg.2006 CDS CP012959.1 1969719 1967773 -3 - 1947 Epi-inositol hydrolase (EC 3.7.1.-) Inositol catabolism
fig|6666666.229899.peg.2007 CDS CP012959.1 1970030 1971940 2 + 1911 5-keto-2-deoxygluconokinase (EC 2.7.1.92) / uncharacterized domain Inositol catabolism;
Inositol catabolism
fig|6666666.229899.peg.2008 CDS CP012959.1 1972816 1971977 -1 - 840 Predicted transcriptional regulator of the myo-inositol catabolic operon Inositol catabolism
fig|6666666.229899.peg.2009 CDS CP012959.1 1973197 1973385 1 + 189 VgrG-3 protein - none -
fig|6666666.229899.peg.2010 CDS CP012959.1 1973508 1974638 3 + 1131 hypothetical protein - none -
fig|6666666.229899.peg.2011 CDS CP012959.1 1974675 1975325 3 + 651 hypothetical protein - none -
fig|6666666.229899.peg.2012 CDS CP012959.1 1975958 1976533 2 + 576 hypothetical protein - none -
fig|6666666.229899.peg.2013 CDS CP012959.1 1977101 1977370 2 + 270 Putative sugar phosphotransferase component II B - none -
fig|6666666.229899.peg.2014 CDS CP012959.1 1977387 1978742 3 + 1356 FIG00732228: membrane protein - none -
fig|6666666.229899.peg.2015 CDS CP012959.1 1978752 1979576 3 + 825 Transketolase, N-terminal section (EC 2.2.1.1) Pentose phosphate pathway
fig|6666666.229899.peg.2016 CDS CP012959.1 1979566 1980510 1 + 945 Transketolase, C-terminal section (EC 2.2.1.1) Pentose phosphate pathway
fig|6666666.229899.peg.2017 CDS CP012959.1 1981627 1980677 -1 - 951 Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p YrdC-YciO-Sua5 protein family
fig|6666666.229899.peg.2018 CDS CP012959.1 1981690 1982196 1 + 507 FIG001674: hypothetical protein - none -
fig|6666666.229899.peg.2019 CDS CP012959.1 1984334 1982193 -2 - 2142 Putative efflux (PET) family inner membrane protein YccS CBSS-83333.1.peg.946
fig|6666666.229899.peg.2020 CDS CP012959.1 1984816 1984343 -1 - 474 Inner membrane protein YccF CBSS-83333.1.peg.946
fig|6666666.229899.peg.2021 CDS CP012959.1 1985274 1984816 -3 - 459 Methylglyoxal synthase (EC 4.2.3.3) CBSS-83333.1.peg.946;
Methylglyoxal Metabolism
fig|6666666.229899.peg.2022 CDS CP012959.1 1986017 1985337 -2 - 681 UPF0319 protein YccT precursor CBSS-83333.1.peg.946
fig|6666666.229899.peg.2023 CDS CP012959.1 1986162 1986434 3 + 273 Acylphosphate phosphohydrolase (EC 3.6.1.7), putative Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229899.peg.2024 CDS CP012959.1 1987257 1986409 -3 - 849 Manganese ABC transporter, inner membrane permease protein SitD - none -
fig|6666666.229899.peg.2025 CDS CP012959.1 1988111 1987254 -2 - 858 Manganese ABC transporter, inner membrane permease protein SitC - none -
fig|6666666.229899.peg.2026 CDS CP012959.1 1989001 1988111 -1 - 891 Manganese ABC transporter, ATP-binding protein SitB - none -
fig|6666666.229899.peg.2027 CDS CP012959.1 1989882 1989001 -3 - 882 Manganese ABC transporter, periplasmic-binding protein SitA - none -
fig|6666666.229899.peg.2028 CDS CP012959.1 1990309 1989980 -1 - 330 tRNA 2-thiouridine synthesizing protein E (EC 2.8.1.-) CBSS-326442.4.peg.1852;
Lipoic acid synthesis cluster;
Sulfite reduction-associated complex DsrMKJOP and co-clustering genes
fig|6666666.229899.peg.2029 CDS CP012959.1 1991057 1990395 -2 - 663 Putative TEGT family carrier/transport protein CBSS-326442.4.peg.1852
fig|6666666.229899.peg.2030 CDS CP012959.1 1991373 1991807 3 + 435 CRISPR-associated helicase Cas3 CRISPRs
fig|6666666.229899.peg.2031 CDS CP012959.1 1991920 1993623 1 + 1704 CRISPR-associated helicase Cas3 CRISPRs
fig|6666666.229899.peg.2032 CDS CP012959.1 1993760 1996636 2 + 2877 helicase (Snf2/Rad54 family) - none -
fig|6666666.229899.peg.2033 CDS CP012959.1 1997243 1998184 2 + 942 FIG00807791: hypothetical protein - none -
fig|6666666.229899.peg.2034 CDS CP012959.1 1998198 1999934 3 + 1737 Type III restriction-modification system methylation subunit (EC 2.1.1.72) Restriction-Modification System
fig|6666666.229899.peg.2035 CDS CP012959.1 1999934 2000077 2 + 144 hypothetical protein - none -
fig|6666666.229899.peg.2036 CDS CP012959.1 2000061 2001095 3 + 1035 Putative DNA-binding protein in cluster with Type I restriction-modification system Restriction-Modification System
fig|6666666.229899.peg.2037 CDS CP012959.1 2001092 2003809 2 + 2718 Type III restriction-modification enzyme helicase subunit - none -
fig|6666666.229899.peg.2038 CDS CP012959.1 2003924 2004598 2 + 675 CRISPR-associated protein, Cas5d family CRISPRs
fig|6666666.229899.peg.2039 CDS CP012959.1 2004595 2005992 1 + 1398 CRISPR-associated protein, Csd1 family CRISPRs
fig|6666666.229899.peg.2040 CDS CP012959.1 2005989 2006372 3 + 384 CRISPR-associated protein, Csd1 family CRISPRs
fig|6666666.229899.peg.2041 CDS CP012959.1 2006385 2007251 3 + 867 CRISPR-associated protein, Csd2 family CRISPRs
fig|6666666.229899.peg.2042 CDS CP012959.1 2007396 2008046 3 + 651 CRISPR-associated RecB family exonuclease Cas4 / CRISPR-associated protein Cas1 CRISPRs
fig|6666666.229899.peg.2043 CDS CP012959.1 2008112 2008816 2 + 705 hypothetical protein - none -
fig|6666666.229899.peg.2044 CDS CP012959.1 2009140 2009295 1 + 156 CRISPR-associated protein Cas2 CRISPRs
fig|6666666.229899.peg.2045 CDS CP012959.1 2010252 2010632 3 + 381 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) - none -
fig|6666666.229899.peg.2046 CDS CP012959.1 2010654 2011658 3 + 1005 Thiamin ABC transporter, substrate-binding component Thiamin biosynthesis
fig|6666666.229899.peg.2047 CDS CP012959.1 2011667 2013295 2 + 1629 Thiamin ABC transporter, transmembrane component Thiamin biosynthesis
fig|6666666.229899.peg.2048 CDS CP012959.1 2013279 2013926 3 + 648 Thiamin ABC transporter, ATPase component / Thiamine transport ATP-binding protein thiQ Thiamin biosynthesis
fig|6666666.229899.peg.2049 CDS CP012959.1 2013972 2014976 3 + 1005 Biotin synthase (EC 2.8.1.6) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229899.peg.2050 CDS CP012959.1 2015578 2015405 -1 - 174 DNA repair protein RadA DNA repair, bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229899.peg.2051 CDS CP012959.1 2015692 2016171 1 + 480 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229899.peg.2052 CDS CP012959.1 2016175 2018919 1 + 2745 Cell division protein FtsK Bacterial Cell Division;
Bacterial Cytoskeleton;
Bacterial RNA-metabolizing Zn-dependent hydrolases;
CBSS-83333.1.peg.876
fig|6666666.229899.peg.2053 CDS CP012959.1 2019012 2019629 3 + 618 Outer membrane lipoprotein carrier protein LolA CBSS-83333.1.peg.876;
Lipopolysaccharide assembly;
Lipoprotein sorting system
fig|6666666.229899.peg.2054 CDS CP012959.1 2019642 2020982 3 + 1341 FIG065221: Holliday junction DNA helicase CBSS-83333.1.peg.876
fig|6666666.229899.peg.2055 CDS CP012959.1 2023146 2021479 -3 - 1668 C4-dicarboxylate transporter DcuB - none -
fig|6666666.229899.peg.2056 CDS CP012959.1 2023453 2024769 1 + 1317 Seryl-tRNA synthetase (EC 6.1.1.11) CBSS-326442.4.peg.1852;
Glycine and Serine Utilization;
tRNA aminoacylation, Ser
fig|6666666.229899.peg.2057 CDS CP012959.1 2025745 2024849 -1 - 897 Cytidine deaminase (EC 3.5.4.5) Murein hydrolase regulation and cell death;
pyrimidine conversions;
tRNA modification Bacteria
fig|6666666.229899.peg.2058 CDS CP012959.1 2026966 2025869 -1 - 1098 ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1) Polyamine Metabolism
fig|6666666.229899.peg.2059 CDS CP012959.1 2027870 2027097 -2 - 774 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) Polyamine Metabolism
fig|6666666.229899.peg.2060 CDS CP012959.1 2028730 2027870 -1 - 861 Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) Polyamine Metabolism
fig|6666666.229899.peg.2061 CDS CP012959.1 2029832 2028714 -2 - 1119 Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) Polyamine Metabolism
fig|6666666.229899.peg.2062 CDS CP012959.1 2030096 2031340 2 + 1245 Tripeptide aminopeptidase (EC 3.4.11.4) - none -
fig|6666666.229899.peg.2063 CDS CP012959.1 2034072 2031415 -3 - 2658 Paraquat-inducible protein B Oxidative stress
fig|6666666.229899.peg.2064 CDS CP012959.1 2035318 2034035 -1 - 1284 Paraquat-inducible protein A Oxidative stress
fig|6666666.229899.peg.2065 CDS CP012959.1 2035536 2036147 3 + 612 ProQ: influences osmotic activation of compatible solute ProP - none -
fig|6666666.229899.peg.2066 CDS CP012959.1 2036221 2038278 1 + 2058 Tail-specific protease precursor (EC 3.4.21.102) - none -
fig|6666666.229899.peg.2067 CDS CP012959.1 2038356 2039864 3 + 1509 L,D-transpeptidase YcbB CBSS-228400.4.peg.1623
fig|6666666.229899.peg.2068 CDS CP012959.1 2039929 2040489 1 + 561 FIG001587: exported protein CBSS-228400.4.peg.1623
fig|6666666.229899.peg.2069 CDS CP012959.1 2040566 2041204 2 + 639 Hypothetical metal-binding enzyme, YcbL homolog CBSS-228400.4.peg.1623
fig|6666666.229899.peg.2070 CDS CP012959.1 2041398 2041276 -3 - 123 hypothetical protein - none -
fig|6666666.229899.peg.2071 CDS CP012959.1 2041483 2044290 1 + 2808 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) Dehydrogenase complexes;
TCA Cycle
fig|6666666.229899.peg.2072 CDS CP012959.1 2044416 2045639 3 + 1224 Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61) Dehydrogenase complexes;
TCA Cycle
fig|6666666.229899.peg.2073 CDS CP012959.1 2045629 2045781 1 + 153 hypothetical protein - none -
fig|6666666.229899.peg.2074 CDS CP012959.1 2045825 2046994 2 + 1170 Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) Serine-glyoxylate cycle;
TCA Cycle
fig|6666666.229899.peg.2075 CDS CP012959.1 2047005 2047877 3 + 873 Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) Serine-glyoxylate cycle;
TCA Cycle
fig|6666666.229899.peg.2076 CDS CP012959.1 2047910 2049202 2 + 1293 hypothetical protein - none -
fig|6666666.229899.peg.2078 CDS CP012959.1 2052466 2050244 -1 - 2223 Formate dehydrogenase H (EC 1.2.1.2) @ selenocysteine-containing Formate dehydrogenase
fig|6666666.229899.peg.2080 CDS CP012959.1 2053792 2052599 -1 - 1194 cell filamentation protein Fic-related protein - none -
fig|6666666.229899.peg.2081 CDS CP012959.1 2054381 2053920 -2 - 462 Coenzyme F420 hydrogenase maturation protease (EC 3.4.24.-) Hydrogenases
fig|6666666.229899.peg.2082 CDS CP012959.1 2054775 2054371 -3 - 405 Formate hydrogenlyase transcriptional activator Formate hydrogenase
fig|6666666.229899.peg.2083 CDS CP012959.1 2055633 2054857 -3 - 777 Formate hydrogenlyase subunit 7 Formate hydrogenase
fig|6666666.229899.peg.2084 CDS CP012959.1 2056277 2055630 -2 - 648 Formate hydrogenlyase complex 3 iron-sulfur protein; Formate hydrogenlyase subunit 6; Ni,Fe-hydrogenase III medium subunit Formate hydrogenase
fig|6666666.229899.peg.2085 CDS CP012959.1 2058021 2056291 -3 - 1731 Formate hydrogenlyase subunit 5 Formate hydrogenase
fig|6666666.229899.peg.2086 CDS CP012959.1 2059579 2058041 -1 - 1539 Hydrogenase-4 component F - none -
fig|6666666.229899.peg.2087 CDS CP012959.1 2060222 2059584 -2 - 639 Hydrogenase-4 component E (EC 1.-.-.-) Formate hydrogenase
fig|6666666.229899.peg.2088 CDS CP012959.1 2061678 2060233 -3 - 1446 Hydrogenase-4 component D (EC 1.-.-.-) Formate hydrogenase
fig|6666666.229899.peg.2089 CDS CP012959.1 2062656 2061691 -3 - 966 Hydrogenase-4 component C (EC 1.-.-.-) Formate hydrogenase
fig|6666666.229899.peg.2090 CDS CP012959.1 2064685 2062664 -1 - 2022 Hydrogenase-4 component B (EC 1.-.-.-) / Formate hydrogenlyase subunit 3 Formate hydrogenase;
Formate hydrogenase
fig|6666666.229899.peg.2091 CDS CP012959.1 2065318 2064719 -1 - 600 Hydrogenase-4 component A - none -
fig|6666666.229899.peg.2092 CDS CP012959.1 2065611 2067896 3 + 2286 [NiFe] hydrogenase metallocenter assembly protein HypF G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229899.peg.2093 CDS CP012959.1 2068367 2068251 -2 - 117 hypothetical protein - none -
fig|6666666.229899.peg.2094 CDS CP012959.1 2069230 2068517 -1 - 714 Formate dehydrogenase -O, gamma subunit (EC 1.2.1.2) Anaerobic respiratory reductases;
Formate hydrogenase
fig|6666666.229899.peg.2095 CDS CP012959.1 2070053 2069223 -2 - 831 Formate dehydrogenase O beta subunit (EC 1.2.1.2) Formate dehydrogenase;
Formate hydrogenase
fig|6666666.229899.peg.2096 CDS CP012959.1 2073261 2070151 -3 - 3111 Formate dehydrogenase N alpha subunit (EC 1.2.1.2) @ selenocysteine-containing Formate dehydrogenase;
Formate hydrogenase
fig|6666666.229899.peg.2097 CDS CP012959.1 2073482 2074306 2 + 825 Formate dehydrogenase chain D (EC 1.2.1.2) Formate hydrogenase
fig|6666666.229899.peg.2098 CDS CP012959.1 2074355 2075353 2 + 999 Gluconate utilization system Gnt-I transcriptional repressor D-gluconate and ketogluconates metabolism
fig|6666666.229899.peg.2099 CDS CP012959.1 2075304 2075426 3 + 123 hypothetical protein - none -
fig|6666666.229899.peg.2100 CDS CP012959.1 2075941 2075423 -1 - 519 Gluconokinase (EC 2.7.1.12) D-gluconate and ketogluconates metabolism;
Entner-Doudoroff Pathway
fig|6666666.229899.peg.2101 CDS CP012959.1 2076159 2077508 3 + 1350 Low-affinity gluconate/H+ symporter GntU D-gluconate and ketogluconates metabolism
fig|6666666.229899.peg.2102 CDS CP012959.1 2077681 2079855 1 + 2175 ATP-dependent DNA helicase UvrD/PcrA DNA repair, bacterial UvrD and related helicases
fig|6666666.229899.peg.2103 CDS CP012959.1 2080814 2079987 -2 - 828 DNA ligase (ATP) (EC 6.5.1.1) DNA ligases
fig|6666666.229899.peg.2104 CDS CP012959.1 2081018 2080857 -2 - 162 hypothetical protein - none -
fig|6666666.229899.peg.2105 CDS CP012959.1 2081734 2080991 -1 - 744 Probable transmembrane protein - none -
fig|6666666.229899.peg.2106 CDS CP012959.1 2082001 2081747 -1 - 255 YoeB toxin protein Toxin-antitoxin replicon stabilization systems
fig|6666666.229899.peg.2107 CDS CP012959.1 2082249 2081998 -3 - 252 YefM protein (antitoxin to YoeB) Toxin-antitoxin replicon stabilization systems
fig|6666666.229899.peg.2108 CDS CP012959.1 2083314 2082358 -3 - 957 Polysaccharide polymerization protein - none -
fig|6666666.229899.peg.2109 CDS CP012959.1 2084774 2083311 -2 - 1464 putative flippase - none -
fig|6666666.229899.peg.2110 CDS CP012959.1 2084965 2085741 1 + 777 Lipopolysaccharide core biosynthesis glycosyltransferase WadA - none -
fig|6666666.229899.peg.2111 CDS CP012959.1 2085750 2086940 3 + 1191 DNA for glycosyltransferase, lytic transglycosylase, dTDP-4-rhamnose reductase - none -
fig|6666666.229899.peg.2112 CDS CP012959.1 2086940 2087821 2 + 882 Glycosyltransferase - none -
fig|6666666.229899.peg.2113 CDS CP012959.1 2087914 2088699 1 + 786 Glucosyl-3-phosphoglycerate synthase (EC 2.4.1.266) - none -
fig|6666666.229899.peg.2114 CDS CP012959.1 2088834 2088688 -3 - 147 hypothetical protein - none -
fig|6666666.229899.peg.2115 CDS CP012959.1 2088806 2089843 2 + 1038 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) Murein Hydrolases;
Peptidoglycan Biosynthesis
fig|6666666.229899.peg.2116 CDS CP012959.1 2089861 2090664 1 + 804 Exodeoxyribonuclease III (EC 3.1.11.2) DNA repair, bacterial
fig|6666666.229899.peg.2117 CDS CP012959.1 2090664 2091452 3 + 789 DNA for glycosyltransferase, lytic transglycosylase, dTDP-4-rhamnose reductase - none -
fig|6666666.229899.peg.2118 CDS CP012959.1 2091477 2092505 3 + 1029 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) - none -
fig|6666666.229899.peg.2119 CDS CP012959.1 2093407 2092667 -1 - 741 FIG00698611: hypothetical protein - none -
fig|6666666.229899.peg.2120 CDS CP012959.1 2094335 2093682 -2 - 654 GTP cyclohydrolase II (EC 3.5.4.25) Molybdenum cofactor biosynthesis;
Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster
fig|6666666.229899.peg.2121 CDS CP012959.1 2094418 2095152 1 + 735 Phosphatidylglycerophosphatase B (EC 3.1.3.27) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Osmotic stress cluster
fig|6666666.229899.peg.2122 CDS CP012959.1 2095203 2096117 3 + 915 ROK family Glucokinase with ambiguous substrate specificity - none -
fig|6666666.229899.peg.2123 CDS CP012959.1 2096410 2096174 -1 - 237 Putative lipoprotein yceB precursor - none -
fig|6666666.229899.peg.2124 CDS CP012959.1 2096759 2096433 -2 - 327 Putative lipoprotein yceB precursor - none -
fig|6666666.229899.peg.2125 CDS CP012959.1 2096961 2097482 3 + 522 unknown - none -
fig|6666666.229899.peg.2126 CDS CP012959.1 2097503 2098288 2 + 786 serine/threonine protein kinase - none -
fig|6666666.229899.peg.2127 CDS CP012959.1 2098285 2098413 1 + 129 hypothetical protein - none -
fig|6666666.229899.peg.2128 CDS CP012959.1 2099429 2098497 -2 - 933 Acyl-CoA thioesterase II (EC 3.1.2.-) Acyl-CoA thioesterase II
fig|6666666.229899.peg.2129 CDS CP012959.1 2101413 2099680 -3 - 1734 Transport ATP-binding protein CydC Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229899.peg.2130 CDS CP012959.1 2103269 2101413 -2 - 1857 Transport ATP-binding protein CydD Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229899.peg.2131 CDS CP012959.1 2104235 2103282 -2 - 954 Thioredoxin reductase (EC 1.8.1.9) Thioredoxin-disulfide reductase;
pyrimidine conversions
fig|6666666.229899.peg.2132 CDS CP012959.1 2105152 2104295 -1 - 858 FIG000875: Thioredoxin domain-containing protein EC-YbbN - none -
fig|6666666.229899.peg.2133 CDS CP012959.1 2106603 2105872 -3 - 732 Molybdopterin biosynthesis protein MoeB Molybdenum cofactor biosynthesis
fig|6666666.229899.peg.2134 CDS CP012959.1 2107833 2106619 -3 - 1215 Molybdopterin biosynthesis protein MoeA Molybdenum cofactor biosynthesis
fig|6666666.229899.peg.2135 CDS CP012959.1 2107962 2108618 3 + 657 GTP cyclohydrolase I (EC 3.5.4.16) type 1 Folate Biosynthesis;
Folate biosynthesis cluster;
Molybdenum cofactor biosynthesis;
Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229899.peg.2136 CDS CP012959.1 2110161 2108719 -3 - 1443 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) Metallocarboxypeptidases (EC 3.4.17.-);
Murein Hydrolases;
Peptidoglycan Biosynthesis
fig|6666666.229899.peg.2137 CDS CP012959.1 2110321 2110797 1 + 477 Transcription elongation factor GreA Transcription factors bacterial
fig|6666666.229899.peg.2138 CDS CP012959.1 2111175 2110873 -3 - 303 FIG004454: RNA binding protein - none -
fig|6666666.229899.peg.2139 CDS CP012959.1 2111343 2111642 3 + 300 Phage-related protein - none -
fig|6666666.229899.peg.2140 CDS CP012959.1 2111639 2111935 2 + 297 FIG045511: hypothetical antitoxin (to FIG022160: hypothetical toxin) - none -
fig|6666666.229899.peg.2141 CDS CP012959.1 2112582 2111968 -3 - 615 Riboflavin synthase eubacterial/eukaryotic (EC 2.5.1.9) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster;
riboflavin to FAD
fig|6666666.229899.peg.2142 CDS CP012959.1 2112609 2114006 3 + 1398 Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps Multidrug Resistance Efflux Pumps;
Riboflavin, FMN and FAD metabolism in plants
fig|6666666.229899.peg.2143 CDS CP012959.1 2114278 2116416 1 + 2139 Ferrichrome-iron receptor - none -
fig|6666666.229899.peg.2144 CDS CP012959.1 2116470 2118215 3 + 1746 Ferrichrome-iron receptor - none -
fig|6666666.229899.peg.2145 CDS CP012959.1 2118808 2118329 -1 - 480 Cys-tRNA(Pro) deacylase YbaK tRNA aminoacylation, Pro
fig|6666666.229899.peg.2146 CDS CP012959.1 2118869 2119840 2 + 972 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch;
Threonine and Homoserine Biosynthesis
fig|6666666.229899.peg.2147 CDS CP012959.1 2122179 2120446 -3 - 1734 Arginyl-tRNA synthetase (EC 6.1.1.19) tRNA aminoacylation, Arg
fig|6666666.229899.peg.2148 CDS CP012959.1 2122276 2122863 1 + 588 Protein yecM - none -
fig|6666666.229899.peg.2149 CDS CP012959.1 2122905 2123360 3 + 456 Outer membrane lipoprotein - none -
fig|6666666.229899.peg.2150 CDS CP012959.1 2123501 2124583 2 + 1083 Peptide chain release factor 1 A Gammaproteobacteria Cluster Relating to Translation;
CBSS-216600.3.peg.802;
Translation termination factors bacterial;
YrdC-YciO-Sua5 protein family
fig|6666666.229899.peg.2151 CDS CP012959.1 2124623 2125522 2 + 900 Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2 A Gammaproteobacteria Cluster Relating to Translation;
CBSS-216600.3.peg.802;
Translation termination factors bacterial;
YrdC-YciO-Sua5 protein family
fig|6666666.229899.peg.2152 CDS CP012959.1 2125532 2126386 2 + 855 2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase (EC 2.5.1.55) A Gammaproteobacteria Cluster Relating to Translation;
KDO2-Lipid A biosynthesis
fig|6666666.229899.peg.2153 CDS CP012959.1 2126566 2127075 1 + 510 probable lipoprotein NlpC - none -
fig|6666666.229899.peg.2154 CDS CP012959.1 2127724 2127473 -1 - 252 Protein YcgL CBSS-243277.1.peg.4359
fig|6666666.229899.peg.2155 CDS CP012959.1 2127808 2128470 1 + 663 Septum site-determining protein MinC Bacterial Cell Division;
Bacterial Cytoskeleton;
Septum site-determining cluster Min
fig|6666666.229899.peg.2156 CDS CP012959.1 2129037 2128492 -3 - 546 FIG00696317: hypothetical protein - none -
fig|6666666.229899.peg.2157 CDS CP012959.1 2129728 2129261 -1 - 468 Phosphohistidine phosphatase SixA - none -
fig|6666666.229899.peg.2158 CDS CP012959.1 2131078 2129741 -1 - 1338 Phosphoglucosamine mutase (EC 5.4.2.10) Sialic Acid Metabolism;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229899.peg.2159 CDS CP012959.1 2131933 2131106 -1 - 828 Dihydropteroate synthase (EC 2.5.1.15) Folate Biosynthesis;
Folate biosynthesis cluster
fig|6666666.229899.peg.2160 CDS CP012959.1 2133668 2132103 -2 - 1566 DNA polymerase IV (EC 2.7.7.7) DNA repair, bacterial
fig|6666666.229899.peg.2161 CDS CP012959.1 2134039 2133665 -1 - 375 hypothetical protein - none -
fig|6666666.229899.peg.2162 CDS CP012959.1 2134326 2134162 -3 - 165 hypothetical protein - none -
fig|6666666.229899.peg.2163 CDS CP012959.1 2134524 2134973 3 + 450 ImpA - none -
fig|6666666.229899.peg.2164 CDS CP012959.1 2135379 2135206 -3 - 174 hypothetical protein - none -
fig|6666666.229899.peg.2165 CDS CP012959.1 2137147 2135681 -1 - 1467 Inosine-5@1-monophosphate dehydrogenase (EC 1.1.1.205) / CBS domain Purine conversions;
Purine salvage cluster
fig|6666666.229899.peg.2166 CDS CP012959.1 2137289 2138221 2 + 933 Biotin-protein ligase (EC 6.3.4.15) Biotin biosynthesis;
Biotin synthesis cluster
fig|6666666.229899.peg.2167 CDS CP012959.1 2138308 2138511 1 + 204 Osmotically inducible lipoprotein B precursor Osmotic stress cluster
fig|6666666.229899.peg.2169 CDS CP012959.1 2145168 2144350 -3 - 819 Peptide transport system ATP-binding protein SapF Peptide ABC transport system Sap
fig|6666666.229899.peg.2170 CDS CP012959.1 2146224 2145172 -3 - 1053 Peptide transport system ATP-binding protein SapD Peptide ABC transport system Sap
fig|6666666.229899.peg.2171 CDS CP012959.1 2147119 2146232 -1 - 888 Peptide transport system permease protein SapC Peptide ABC transport system Sap
fig|6666666.229899.peg.2172 CDS CP012959.1 2147993 2147109 -2 - 885 Peptide transport system permease protein SapB Peptide ABC transport system Sap
fig|6666666.229899.peg.2173 CDS CP012959.1 2149705 2148074 -1 - 1632 Peptide transport periplasmic protein SapA Peptide ABC transport system Sap
fig|6666666.229899.peg.2174 CDS CP012959.1 2149971 2151386 3 + 1416 Conserved protein YcjX with nucleoside triphosphate hydrolase domain A conserved operon linked to TyrR and possibly involved in virulence
fig|6666666.229899.peg.2175 CDS CP012959.1 2151399 2152478 3 + 1080 Membrane protein YcjF A conserved operon linked to TyrR and possibly involved in virulence
fig|6666666.229899.peg.2176 CDS CP012959.1 2152562 2153521 2 + 960 Transcriptional repressor protein TyrR Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate);
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229899.peg.2177 CDS CP012959.1 2153884 2153576 -1 - 309 GTP-binding protein HflX Hfl operon;
Universal GTPases
fig|6666666.229899.peg.2178 CDS CP012959.1 2154195 2153899 -3 - 297 RNA-binding protein Hfq Hfl operon;
Polyadenylation bacterial
fig|6666666.229899.peg.2179 CDS CP012959.1 2155259 2154315 -2 - 945 tRNA dimethylallyltransferase (EC 2.5.1.75) tRNA modification Bacteria;
tRNA processing
fig|6666666.229899.peg.2180 CDS CP012959.1 2157124 2155274 -1 - 1851 DNA mismatch repair protein MutL DNA repair, bacterial MutL-MutS system
fig|6666666.229899.peg.2181 CDS CP012959.1 2158611 2157124 -3 - 1488 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) Murein Hydrolases;
Recycling of Peptidoglycan Amino Acids
fig|6666666.229899.peg.2182 CDS CP012959.1 2159102 2158608 -2 - 495 TsaE protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA Scaffold proteins for [4Fe-4S] cluster assembly (MRP family);
YjeE;
YrdC-YciO-Sua5 protein family
fig|6666666.229899.peg.2183 CDS CP012959.1 2159077 2159205 1 + 129 hypothetical protein - none -
fig|6666666.229899.peg.2184 CDS CP012959.1 2161051 2159258 -1 - 1794 Mlr4739 protein - none -
fig|6666666.229899.peg.2185 CDS CP012959.1 2162359 2161439 -1 - 921 RfbJ protein - none -
fig|6666666.229899.peg.2186 CDS CP012959.1 2163875 2162367 -2 - 1509 putative integral membrane protein - none -
fig|6666666.229899.peg.2187 CDS CP012959.1 2164479 2163862 -3 - 618 Glycerate kinase (EC 2.7.1.31) D-galactarate, D-glucarate and D-glycerate catabolism;
D-galactarate, D-glucarate and D-glycerate catabolism - gjo;
Glycerate metabolism;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Glycine and Serine Utilization;
Serine-glyoxylate cycle
fig|6666666.229899.peg.2188 CDS CP012959.1 2166022 2164508 -1 - 1515 Dca - none -
fig|6666666.229899.peg.2189 CDS CP012959.1 2167356 2166535 -3 - 822 probable phage integrase - none -
fig|6666666.229899.peg.2190 CDS CP012959.1 2169350 2167440 -2 - 1911 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes - none -
fig|6666666.229899.peg.2191 CDS CP012959.1 2169644 2169823 2 + 180 Haemophilus-specific protein, uncharacterized - none -
fig|6666666.229899.peg.2192 CDS CP012959.1 2170137 2170316 3 + 180 hypothetical protein - none -
fig|6666666.229899.peg.2193 CDS CP012959.1 2171144 2171488 2 + 345 Programmed cell death toxin MazF - none -
fig|6666666.229899.peg.2194 CDS CP012959.1 2171572 2171838 1 + 267 Virulence plasmid protein - none -
fig|6666666.229899.peg.2195 CDS CP012959.1 2172053 2172721 2 + 669 Cytolethal distending toxin subunit A Cytolethal distending toxin of Campylobacter jejuni;
Cytolethal distending toxins
fig|6666666.229899.peg.2196 CDS CP012959.1 2172736 2173587 1 + 852 Cytolethal distending toxin subunit B Cytolethal distending toxin of Campylobacter jejuni;
Cytolethal distending toxins
fig|6666666.229899.peg.2197 CDS CP012959.1 2173598 2174158 2 + 561 Cytolethal distending toxin subunit C Cytolethal distending toxin of Campylobacter jejuni;
Cytolethal distending toxins
fig|6666666.229899.peg.2198 CDS CP012959.1 2175526 2174765 -1 - 762 DUF1526 domain-containing protein - none -
fig|6666666.229899.peg.2199 CDS CP012959.1 2176228 2176341 1 + 114 hypothetical protein - none -
fig|6666666.229899.peg.2200 CDS CP012959.1 2176576 2176899 1 + 324 FIG00696053: hypothetical protein - none -
fig|6666666.229899.peg.2201 CDS CP012959.1 2176899 2177138 3 + 240 hypothetical protein - none -
fig|6666666.229899.peg.2202 CDS CP012959.1 2177155 2177562 1 + 408 FIG00696269: hypothetical protein - none -
fig|6666666.229899.peg.2203 CDS CP012959.1 2177581 2177952 1 + 372 FIG00696467: hypothetical protein - none -
fig|6666666.229899.peg.2204 CDS CP012959.1 2177964 2178596 3 + 633 Possible exported protein - none -
fig|6666666.229899.peg.2205 CDS CP012959.1 2178596 2179456 2 + 861 FIG00698030: hypothetical protein - none -
fig|6666666.229899.peg.2206 CDS CP012959.1 2179467 2180855 3 + 1389 putative exported protein - none -
fig|6666666.229899.peg.2207 CDS CP012959.1 2180864 2181271 2 + 408 putative lipoprotein - none -
fig|6666666.229899.peg.2208 CDS CP012959.1 2182109 2181561 -2 - 549 3@1-to-5@1 oligoribonuclease (orn) RNA processing and degradation, bacterial
fig|6666666.229899.peg.2209 CDS CP012959.1 2182181 2183221 2 + 1041 Ribosome small subunit-stimulated GTPase EngC Universal GTPases
fig|6666666.229899.peg.2210 CDS CP012959.1 2183442 2183699 3 + 258 Phosphotransferase system, phosphocarrier protein HPr Fructose utilization;
Mannitol Utilization
fig|6666666.229899.peg.2211 CDS CP012959.1 2183816 2185543 2 + 1728 Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) Fructose utilization;
Mannitol Utilization
fig|6666666.229899.peg.2212 CDS CP012959.1 2185604 2186104 2 + 501 PTS system, glucose-specific IIA component - none -
fig|6666666.229899.peg.2213 CDS CP012959.1 2188269 2186230 -3 - 2040 Oligopeptidase A (EC 3.4.24.70) Protein degradation
fig|6666666.229899.peg.2214 CDS CP012959.1 2188411 2188776 1 + 366 FIG039061: hypothetical protein related to heme utilization - none -
fig|6666666.229899.peg.2215 CDS CP012959.1 2188832 2189227 2 + 396 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229899.peg.2216 CDS CP012959.1 2189300 2190370 2 + 1071 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229899.peg.2217 CDS CP012959.1 2190760 2190641 -1 - 120 hypothetical protein - none -
fig|6666666.229899.peg.2218 CDS CP012959.1 2191977 2190805 -3 - 1173 hypothetical protein - none -
fig|6666666.229899.peg.2219 CDS CP012959.1 2193220 2192048 -1 - 1173 hypothetical protein - none -
fig|6666666.229899.peg.2220 CDS CP012959.1 2194468 2193293 -1 - 1176 hypothetical protein - none -
fig|6666666.229899.peg.2221 CDS CP012959.1 2196585 2194468 -3 - 2118 Probable phospholipase protein - none -
fig|6666666.229899.peg.2222 CDS CP012959.1 2198488 2196617 -1 - 1872 VgrG-3 protein - none -
fig|6666666.229899.peg.2223 CDS CP012959.1 2198655 2198485 -3 - 171 hypothetical protein - none -
fig|6666666.229899.peg.2224 CDS CP012959.1 2199428 2198838 -2 - 591 Aminodeoxychorismate lyase (EC 4.1.3.38) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Folate Biosynthesis;
Tryptophan synthesis
fig|6666666.229899.peg.2225 CDS CP012959.1 2200405 2199431 -1 - 975 Para-aminobenzoate synthase, aminase component (EC 2.6.1.85) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Folate Biosynthesis;
Tryptophan synthesis
fig|6666666.229899.peg.2226 CDS CP012959.1 2200508 2201074 2 + 567 Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Folate Biosynthesis;
Tryptophan synthesis
fig|6666666.229899.peg.2227 CDS CP012959.1 2201230 2202174 1 + 945 Hydroxypyruvate reductase (EC 1.1.1.81) Glycerate metabolism;
Glycolate, glyoxylate interconversions
fig|6666666.229899.peg.2228 CDS CP012959.1 2202392 2202670 2 + 279 Ethidium bromide-methyl viologen resistance protein EmrE - none -
fig|6666666.229899.peg.2229 CDS CP012959.1 2203813 2202938 -1 - 876 Ribulosamine/erythrulosamine 3-kinase potentially involved in protein deglycation Protein deglycation
fig|6666666.229899.peg.2230 CDS CP012959.1 2204053 2205984 1 + 1932 Threonyl-tRNA synthetase (EC 6.1.1.3) tRNA aminoacylation, Thr
fig|6666666.229899.peg.2231 CDS CP012959.1 2206554 2206090 -3 - 465 Mobile element protein - none -
fig|6666666.229899.peg.2232 CDS CP012959.1 2206850 2206548 -2 - 303 Mobile element protein - none -
fig|6666666.229899.peg.2233 CDS CP012959.1 2207221 2206847 -1 - 375 hypothetical protein - none -
fig|6666666.229899.peg.2234 CDS CP012959.1 2207369 2207232 -2 - 138 hypothetical protein - none -
fig|6666666.229899.peg.2235 CDS CP012959.1 2208166 2207387 -1 - 780 Ferredoxin--NADP(+) reductase (EC 1.18.1.2) Biogenesis of cytochrome c oxidases
fig|6666666.229899.peg.2236 CDS CP012959.1 2208542 2209021 2 + 480 Translation initiation factor 3 Translation initiation factors bacterial
fig|6666666.229899.peg.2237 CDS CP012959.1 2209228 2209022 -1 - 207 hypothetical protein - none -
fig|6666666.229899.peg.2238 CDS CP012959.1 2209497 2209850 3 + 354 LSU ribosomal protein L20p Ribosome LSU bacterial
fig|6666666.229899.peg.2239 CDS CP012959.1 2210736 2210617 -3 - 120 hypothetical protein - none -
fig|6666666.229899.peg.2240 CDS CP012959.1 2210827 2211780 1 + 954 Tagatose 1,6-diphosphate aldolase (EC 4.1.2.40) Lactose and Galactose Uptake and Utilization
fig|6666666.229899.peg.2241 CDS CP012959.1 2211795 2213996 3 + 2202 PTS system, galactitol-specific IIC component (EC 2.7.1.69) - none -
fig|6666666.229899.peg.2242 CDS CP012959.1 2214019 2214999 1 + 981 Galactitol-1-phosphate 5-dehydrogenase (EC 1.1.1.251) - none -
fig|6666666.229899.peg.2243 CDS CP012959.1 2215066 2215824 1 + 759 Galactitol utilization operon repressor - none -
fig|6666666.229899.peg.2244 CDS CP012959.1 2217794 2215944 -2 - 1851 1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis;
Pyridoxin (Vitamin B6) Biosynthesis;
Thiamin biosynthesis
fig|6666666.229899.peg.2245 CDS CP012959.1 2218769 2217879 -2 - 891 Octaprenyl diphosphate synthase (EC 2.5.1.90) / Dimethylallyltransferase (EC 2.5.1.1) / (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10) / Geranylgeranyl diphosphate synthase (EC 2.5.1.29) Isoprenoid Biosynthesis;
Isoprenoid Biosynthesis;
Isoprenoid Biosynthesis: Interconversions;
Isoprenoinds for Quinones;
Isoprenoinds for Quinones;
Isoprenoinds for Quinones;
Isoprenoinds for Quinones;
Polyprenyl Diphosphate Biosynthesis;
Polyprenyl Diphosphate Biosynthesis;
Polyprenyl Diphosphate Biosynthesis
fig|6666666.229899.peg.2246 CDS CP012959.1 2219025 2218780 -3 - 246 Exodeoxyribonuclease VII small subunit (EC 3.1.11.6) DNA repair, bacterial;
Purine salvage cluster
fig|6666666.229899.peg.2247 CDS CP012959.1 2219251 2220147 1 + 897 Acetyl-coenzyme A carboxyl transferase beta chain (EC 6.4.1.2) Fatty Acid Biosynthesis FASII
fig|6666666.229899.peg.2248 CDS CP012959.1 2220170 2221516 2 + 1347 Dihydrofolate synthase (EC 6.3.2.12) @ Folylpolyglutamate synthase (EC 6.3.2.17) Folate Biosynthesis;
Folate Biosynthesis
fig|6666666.229899.peg.2249 CDS CP012959.1 2222214 2221573 -3 - 642 Hypothetical, related to broad specificity phosphatases COG0406 CBSS-196164.1.peg.461
fig|6666666.229899.peg.2250 CDS CP012959.1 2223733 2222276 -1 - 1458 Cardiolipin synthetase (EC 2.7.8.-) Cardiolipin synthesis;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229899.peg.2251 CDS CP012959.1 2224655 2223747 -2 - 909 Putative surface protein - none -
fig|6666666.229899.peg.2252 CDS CP012959.1 2224787 2225464 2 + 678 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses;
Ribosome biogenesis bacterial;
tRNA modification Bacteria
fig|6666666.229899.peg.2253 CDS CP012959.1 2225509 2225685 1 + 177 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229899.peg.2254 CDS CP012959.1 2225682 2226371 3 + 690 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229899.peg.2255 CDS CP012959.1 2226455 2226778 2 + 324 Alkylphosphonate utilization operon protein PhnA - none -
fig|6666666.229899.peg.2256 CDS CP012959.1 2226895 2228166 1 + 1272 Esterase/lipase - none -
fig|6666666.229899.peg.2257 CDS CP012959.1 2228188 2228436 1 + 249 Esterase/lipase - none -
fig|6666666.229899.peg.2258 CDS CP012959.1 2230064 2228691 -2 - 1374 RND efflux system, outer membrane lipoprotein CmeC Multidrug Resistance Efflux Pumps
fig|6666666.229899.peg.2259 CDS CP012959.1 2232075 2230141 -3 - 1935 Macrolide export ATP-binding/permease protein MacB (EC 3.6.3.-) Multidrug Resistance Efflux Pumps
fig|6666666.229899.peg.2260 CDS CP012959.1 2233279 2232095 -1 - 1185 Macrolide-specific efflux protein MacA Multidrug Resistance Efflux Pumps
fig|6666666.229899.peg.2261 CDS CP012959.1 2233480 2235171 1 + 1692 Glutaminyl-tRNA synthetase (EC 6.1.1.18) tRNA aminoacylation, Glu and Gln
fig|6666666.229899.peg.2262 CDS CP012959.1 2235426 2235569 3 + 144 HigB toxin protein Toxin-antitoxin replicon stabilization systems
fig|6666666.229899.peg.2263 CDS CP012959.1 2235579 2235875 3 + 297 HigA protein (antitoxin to HigB) Toxin-antitoxin replicon stabilization systems
fig|6666666.229899.peg.2264 CDS CP012959.1 2235988 2235872 -1 - 117 hypothetical protein - none -
fig|6666666.229899.peg.2265 CDS CP012959.1 2235987 2236343 3 + 357 YcgN (Fragment) CBSS-243277.1.peg.4359
fig|6666666.229899.peg.2266 CDS CP012959.1 2236532 2236332 -2 - 201 Mobile element protein - none -
fig|6666666.229899.peg.2267 CDS CP012959.1 2236659 2236534 -3 - 126 Mobile element protein - none -
fig|6666666.229899.peg.2268 CDS CP012959.1 2236976 2238370 2 + 1395 hypothetical protein - none -
fig|6666666.229899.peg.2269 CDS CP012959.1 2238381 2239013 3 + 633 hypothetical protein - none -
fig|6666666.229899.peg.2270 CDS CP012959.1 2238995 2241286 2 + 2292 hypothetical protein - none -
fig|6666666.229899.peg.2271 CDS CP012959.1 2241613 2242482 1 + 870 hypothetical protein - none -
fig|6666666.229899.peg.2272 CDS CP012959.1 2243049 2244233 3 + 1185 Lipoprotein releasing system transmembrane protein LolC Lipopolysaccharide assembly;
Lipoprotein sorting system
fig|6666666.229899.peg.2273 CDS CP012959.1 2244248 2244934 2 + 687 Lipoprotein releasing system ATP-binding protein LolD Lipopolysaccharide assembly;
Lipoprotein sorting system
fig|6666666.229899.peg.2274 CDS CP012959.1 2244934 2246184 1 + 1251 Lipoprotein releasing system transmembrane protein LolE Lipopolysaccharide assembly;
Lipoprotein sorting system
fig|6666666.229899.peg.2275 CDS CP012959.1 2246285 2247364 2 + 1080 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha (EC 2.5.1.54) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229899.peg.2276 CDS CP012959.1 2247495 2247373 -3 - 123 hypothetical protein - none -
fig|6666666.229899.peg.2277 CDS CP012959.1 2247510 2248916 3 + 1407 Replicative DNA helicase (EC 3.6.1.-) - none -
fig|6666666.229899.peg.2278 CDS CP012959.1 2248940 2250022 2 + 1083 Alanine racemase (EC 5.1.1.1) ## biosynthetic Alanine biosynthesis;
Pyruvate Alanine Serine Interconversions
fig|6666666.229899.peg.2279 CDS CP012959.1 2250038 2251687 2 + 1650 Glucose-6-phosphate isomerase (EC 5.3.1.9) Glycolysis and Gluconeogenesis
fig|6666666.229899.peg.2280 CDS CP012959.1 2252892 2252008 -3 - 885 hypothetical protein - none -
fig|6666666.229899.peg.2281 CDS CP012959.1 2253135 2253608 3 + 474 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster
fig|6666666.229899.peg.2282 CDS CP012959.1 2253615 2254040 3 + 426 Transcription termination protein NusB Riboflavin synthesis cluster;
Transcription factors bacterial
fig|6666666.229899.peg.2283 CDS CP012959.1 2254059 2255042 3 + 984 Thiamine-monophosphate kinase (EC 2.7.4.16) 5-FCL-like protein;
Riboflavin synthesis cluster;
Thiamin biosynthesis
fig|6666666.229899.peg.2284 CDS CP012959.1 2255052 2255543 3 + 492 Phosphatidylglycerophosphatase A (EC 3.1.3.27) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Riboflavin synthesis cluster
fig|6666666.229899.peg.2285 CDS CP012959.1 2255552 2256175 2 + 624 L-lysine permease - none -
fig|6666666.229899.peg.2286 CDS CP012959.1 2256197 2257009 2 + 813 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229899.peg.2287 CDS CP012959.1 2257347 2257099 -3 - 249 Ferredoxin Soluble cytochromes and functionally related electron carriers
fig|6666666.229899.peg.2288 CDS CP012959.1 2257686 2257417 -3 - 270 hypothetical protein - none -
fig|6666666.229899.peg.2289 CDS CP012959.1 2258838 2257708 -3 - 1131 Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) Ribonucleotide reduction
fig|6666666.229899.peg.2290 CDS CP012959.1 2259812 2258859 -2 - 954 hypothetical protein - none -
fig|6666666.229899.peg.2291 CDS CP012959.1 2260872 2259814 -3 - 1059 hypothetical protein - none -
fig|6666666.229899.peg.2292 CDS CP012959.1 2263177 2260907 -1 - 2271 Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) Ribonucleotide reduction
fig|6666666.229899.peg.2293 CDS CP012959.1 2263514 2263386 -2 - 129 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) Restriction-Modification System
fig|6666666.229899.peg.2294 CDS CP012959.1 2264952 2263480 -3 - 1473 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) Restriction-Modification System
fig|6666666.229899.peg.2295 CDS CP012959.1 2265054 2265215 3 + 162 hypothetical protein - none -
fig|6666666.229899.peg.2296 CDS CP012959.1 2265226 2266254 1 + 1029 Ferric iron ABC transporter, iron-binding protein Iron acquisition in Streptococcus
fig|6666666.229899.peg.2297 CDS CP012959.1 2266306 2268336 1 + 2031 Ferric iron ABC transporter, permease protein Iron acquisition in Streptococcus
fig|6666666.229899.peg.2298 CDS CP012959.1 2268320 2269360 2 + 1041 Sulfate and thiosulfate import ATP-binding protein CysA (EC 3.6.3.25) Cysteine Biosynthesis;
Uptake of selenate and selenite
fig|6666666.229899.peg.2299 CDS CP012959.1 2271471 2269420 -3 - 2052 Periplasmic alpha-amylase (EC 3.2.1.1) Maltose and Maltodextrin Utilization
fig|6666666.229899.peg.2300 CDS CP012959.1 2272455 2271565 -3 - 891 Maltose/maltodextrin ABC transporter, permease protein MalG Maltose and Maltodextrin Utilization
fig|6666666.229899.peg.2301 CDS CP012959.1 2274015 2272477 -3 - 1539 Maltose/maltodextrin ABC transporter, permease protein MalF Maltose and Maltodextrin Utilization
fig|6666666.229899.peg.2302 CDS CP012959.1 2274170 2274039 -2 - 132 hypothetical protein - none -
fig|6666666.229899.peg.2303 CDS CP012959.1 2275329 2274139 -3 - 1191 Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein MalE Alpha-Amylase locus in Streptocococcus;
Bacterial Chemotaxis;
Maltose and Maltodextrin Utilization
fig|6666666.229899.peg.2304 CDS CP012959.1 2275785 2276903 3 + 1119 Maltose/maltodextrin transport ATP-binding protein MalK (EC 3.6.3.19) Maltose and Maltodextrin Utilization
fig|6666666.229899.peg.2305 CDS CP012959.1 2276980 2278263 1 + 1284 Maltoporin (maltose/maltodextrin high-affinity receptor, phage lambda receptor protein) Maltose and Maltodextrin Utilization
fig|6666666.229899.peg.2306 CDS CP012959.1 2278349 2279251 2 + 903 Maltose operon periplasmic protein MalM Maltose and Maltodextrin Utilization
fig|6666666.229899.peg.2307 CDS CP012959.1 2279322 2279453 3 + 132 hypothetical protein - none -
fig|6666666.229899.peg.2308 CDS CP012959.1 2280423 2279605 -3 - 819 Aldose 1-epimerase - none -
fig|6666666.229899.peg.2309 CDS CP012959.1 2280499 2282436 1 + 1938 DinG family ATP-dependent helicase YoaA DNA repair, bacterial DinG and relatives
fig|6666666.229899.peg.2310 CDS CP012959.1 2282439 2283161 3 + 723 TsaB protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Ribosome biogenesis bacterial;
YgjD and YeaZ;
YjeE;
YrdC-YciO-Sua5 protein family
fig|6666666.229899.peg.2311 CDS CP012959.1 2283193 2283750 1 + 558 Starvation lipoprotein Slp paralog Carbon Starvation
fig|6666666.229899.peg.2312 CDS CP012959.1 2283793 2284398 1 + 606 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) Biotin biosynthesis;
Biotin synthesis cluster
fig|6666666.229899.peg.2313 CDS CP012959.1 2284399 2285481 1 + 1083 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) Biotin biosynthesis;
Biotin synthesis cluster
fig|6666666.229899.peg.2314 CDS CP012959.1 2285548 2286705 1 + 1158 Ribonuclease D (EC 3.1.26.3) tRNA processing
fig|6666666.229899.peg.2315 CDS CP012959.1 2288175 2286793 -3 - 1383 Cytochrome c551 peroxidase (EC 1.11.1.5) Protection from Reactive Oxygen Species
fig|6666666.229899.peg.2316 CDS CP012959.1 2288516 2288725 2 + 210 hypothetical protein - none -
fig|6666666.229899.peg.2317 CDS CP012959.1 2288977 2289204 1 + 228 hypothetical protein - none -
fig|6666666.229899.peg.2318 CDS CP012959.1 2289977 2290798 2 + 822 probable glucanotransferase (endo alpha-1,4 polygalactosaminidase related protein) - none -
fig|6666666.229899.peg.2319 CDS CP012959.1 2291320 2292246 1 + 927 Putative stomatin/prohibitin-family membrane protease subunit YbbK - none -
fig|6666666.229899.peg.2320 CDS CP012959.1 2292270 2292716 3 + 447 Putative activity regulator of membrane protease YbbK - none -
fig|6666666.229899.peg.2321 CDS CP012959.1 2292725 2293336 2 + 612 NAD(P)H oxidoreductase YRKL (EC 1.6.99.-) @ Putative NADPH-quinone reductase (modulator of drug activity B) @ Flavodoxin 2 Flavodoxin;
Flavodoxin
fig|6666666.229899.peg.2322 CDS CP012959.1 2293336 2293899 1 + 564 Putative oxidoreductase component of anaerobic dehydrogenases; Functional role page for Chaperone protein TorD - none -
fig|6666666.229899.peg.2323 CDS CP012959.1 2294892 2293957 -3 - 936 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) KDO2-Lipid A biosynthesis
fig|6666666.229899.peg.2324 CDS CP012959.1 2295006 2296436 3 + 1431 ADP-heptose synthase (EC 2.7.-.-) / D-glycero-beta-D-manno-heptose 7-phosphate kinase LOS core oligosaccharide biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.229899.peg.2325 CDS CP012959.1 2296858 2296478 -1 - 381 Cysteine desulfurase CsdA-CsdE, sulfur acceptor protein CsdE - none -
fig|6666666.229899.peg.2326 CDS CP012959.1 2298054 2296855 -3 - 1200 Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA Alanine biosynthesis;
mnm5U34 biosynthesis bacteria;
tRNA modification Archaea
fig|6666666.229899.peg.2327 CDS CP012959.1 2298560 2298060 -2 - 501 Micrococcal nuclease (thermonuclease) homologs - none -
fig|6666666.229899.peg.2328 CDS CP012959.1 2299542 2298577 -3 - 966 tRNA(Cytosine32)-2-thiocytidine synthetase CBSS-326442.4.peg.1852;
tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229899.peg.2329 CDS CP012959.1 2299683 2300099 3 + 417 putative membrane protein - none -
fig|6666666.229899.peg.2330 CDS CP012959.1 2302201 2300189 -1 - 2013 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins Ton and Tol transport systems
fig|6666666.229899.peg.2331 CDS CP012959.1 2302700 2302203 -2 - 498 FIG00697418: hypothetical protein - none -
fig|6666666.229899.peg.2332 CDS CP012959.1 2302911 2303912 3 + 1002 ABC transporter, solute-binding protein - none -
fig|6666666.229899.peg.2333 CDS CP012959.1 2303912 2304925 2 + 1014 Vitamin B12 ABC transporter, permease component BtuC - none -
fig|6666666.229899.peg.2334 CDS CP012959.1 2304922 2305671 1 + 750 ABC transporter ATP-binding protein - none -
fig|6666666.229899.peg.2335 CDS CP012959.1 2305766 2306068 2 + 303 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins Ton and Tol transport systems
fig|6666666.229899.peg.2336 CDS CP012959.1 2306065 2308161 1 + 2097 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins Ton and Tol transport systems
fig|6666666.229899.peg.2337 CDS CP012959.1 2308490 2308281 -2 - 210 Molybdate-binding domain of ModE Molybdenum cofactor biosynthesis
fig|6666666.229899.peg.2338 CDS CP012959.1 2309607 2308573 -3 - 1035 FIG00362752: hypothetical protein - none -
fig|6666666.229899.peg.2339 CDS CP012959.1 2310414 2309620 -3 - 795 Glutathione synthetase (EC 6.3.2.3) Cluster containing Glutathione synthetase;
Glutathione: Biosynthesis and gamma-glutamyl cycle;
Heat shock dnaK gene cluster extended
fig|6666666.229899.peg.2340 CDS CP012959.1 2311478 2310414 -2 - 1065 Vitamin B12 ABC transporter, permease component BtuC - none -
fig|6666666.229899.peg.2341 CDS CP012959.1 2312308 2311613 -1 - 696 hypothetical protein - none -
fig|6666666.229899.peg.2342 CDS CP012959.1 2312251 2312508 1 + 258 Phage tail fibers Phage tail fiber proteins
fig|6666666.229899.peg.2343 CDS CP012959.1 2312508 2312771 3 + 264 Phage tail fibers Phage tail fiber proteins
fig|6666666.229899.peg.2344 CDS CP012959.1 2312808 2313548 3 + 741 Mobile element protein - none -
fig|6666666.229899.peg.2345 CDS CP012959.1 2314468 2313677 -1 - 792 Mobile element protein - none -
fig|6666666.229899.peg.2346 CDS CP012959.1 2315021 2314626 -2 - 396 FIG002813: LPPG:FO 2-phospho-L-lactate transferase like, CofD-like - none -
fig|6666666.229899.peg.2347 CDS CP012959.1 2315589 2315023 -3 - 567 FIG002813: LPPG:FO 2-phospho-L-lactate transferase like, CofD-like - none -
fig|6666666.229899.peg.2348 CDS CP012959.1 2315947 2316960 1 + 1014 Molybdenum cofactor biosynthesis protein MoaA Molybdenum cofactor biosynthesis;
ar-104-EC Molybdenum cofactor biosynthesis moaABCDE
fig|6666666.229899.peg.2349 CDS CP012959.1 2317055 2317495 2 + 441 Molybdenum cofactor biosynthesis protein MoaC Molybdenum cofactor biosynthesis;
ar-104-EC Molybdenum cofactor biosynthesis moaABCDE
fig|6666666.229899.peg.2350 CDS CP012959.1 2317495 2317740 1 + 246 Molybdenum cofactor biosynthesis protein MoaD Molybdenum cofactor biosynthesis;
ar-104-EC Molybdenum cofactor biosynthesis moaABCDE
fig|6666666.229899.peg.2351 CDS CP012959.1 2317741 2318196 1 + 456 Molybdenum cofactor biosynthesis protein MoaE Molybdenum cofactor biosynthesis;
ar-104-EC Molybdenum cofactor biosynthesis moaABCDE
fig|6666666.229899.peg.2352 CDS CP012959.1 2318396 2319037 2 + 642 Stringent starvation protein A Carbon Starvation
fig|6666666.229899.peg.2353 CDS CP012959.1 2319049 2319510 1 + 462 Stringent starvation protein B Carbon Starvation
fig|6666666.229899.peg.2354 CDS CP012959.1 2321076 2319673 -3 - 1404 Asparaginyl-tRNA synthetase (EC 6.1.1.22) tRNA aminoacylation, Asp and Asn;
tRNA modification Archaea
fig|6666666.229899.peg.2355 CDS CP012959.1 2321272 2322501 1 + 1230 Mlc, transcriptional repressor of MalT (the transcriptional activator of maltose regulon) and manXYZ operon Maltose and Maltodextrin Utilization
fig|6666666.229899.peg.2356 CDS CP012959.1 2322578 2323306 2 + 729 Dethiobiotin synthetase (EC 6.3.3.3) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229899.peg.2357 CDS CP012959.1 2324970 2323396 -3 - 1575 Autoinducer 2 (AI-2) kinase LsrK (EC 2.7.1.-) Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229899.peg.2358 CDS CP012959.1 2325984 2325019 -3 - 966 LsrR, transcriptional repressor of lsr operon Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229899.peg.2359 CDS CP012959.1 2326228 2327745 1 + 1518 Autoinducer 2 (AI-2) ABC transport system, fused AI2 transporter subunits and ATP-binding component Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229899.peg.2360 CDS CP012959.1 2327754 2328785 3 + 1032 Autoinducer 2 (AI-2) ABC transport system, membrane channel protein LsrC Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229899.peg.2361 CDS CP012959.1 2328799 2329803 1 + 1005 Autoinducer 2 (AI-2) ABC transport system, membrane channel protein LsrD Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229899.peg.2362 CDS CP012959.1 2329828 2330925 1 + 1098 Autoinducer 2 (AI-2) ABC transport system, periplasmic AI-2 binding protein LsrB Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229899.peg.2363 CDS CP012959.1 2330944 2331822 1 + 879 Autoinducer 2 (AI-2) aldolase LsrF (EC 4.2.1.-) Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229899.peg.2364 CDS CP012959.1 2331855 2332157 3 + 303 Autoinducer 2 (AI-2) modifying protein LsrG Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229899.peg.2365 CDS CP012959.1 2333673 2332261 -3 - 1413 Pyruvate kinase (EC 2.7.1.40) Entner-Doudoroff Pathway;
Glycerate metabolism;
Glycolysis and Gluconeogenesis;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229899.peg.2366 CDS CP012959.1 2334948 2333959 -3 - 990 Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) Ribonucleotide reduction
fig|6666666.229899.peg.2367 CDS CP012959.1 2336764 2335079 -1 - 1686 Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) Ribonucleotide reduction
fig|6666666.229899.peg.2368 CDS CP012959.1 2337846 2337040 -3 - 807 Tryptophan synthase alpha chain (EC 4.2.1.20) Auxin biosynthesis;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229899.peg.2369 CDS CP012959.1 2339042 2337849 -2 - 1194 Tryptophan synthase beta chain (EC 4.2.1.20) Auxin biosynthesis;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229899.peg.2370 CDS CP012959.1 2339789 2339052 -2 - 738 3-hydroxypropionate dehydrogenase (EC 1.1.1.298) - none -
fig|6666666.229899.peg.2371 CDS CP012959.1 2339777 2339989 2 + 213 hypothetical protein - none -
fig|6666666.229899.peg.2372 CDS CP012959.1 2340495 2342939 3 + 2445 Outer membrane receptor for lactoferrin or transferrin, TonB-dependent protein A - none -
fig|6666666.229899.peg.2373 CDS CP012959.1 2343331 2343134 -1 - 198 hypothetical protein - none -
fig|6666666.229899.peg.2374 CDS CP012959.1 2344647 2343343 -3 - 1305 Oxaloacetate decarboxylase beta chain (EC 4.1.1.3) Na+ translocating decarboxylases and related biotin-dependent enzymes;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229899.peg.2375 CDS CP012959.1 2346454 2344658 -1 - 1797 Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3) Na+ translocating decarboxylases and related biotin-dependent enzymes;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229899.peg.2376 CDS CP012959.1 2346736 2346470 -1 - 267 Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3) Na+ translocating decarboxylases and related biotin-dependent enzymes;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229899.peg.2377 CDS CP012959.1 2347263 2347640 3 + 378 hypothetical protein - none -
fig|6666666.229899.peg.2378 CDS CP012959.1 2348039 2347764 -2 - 276 [NiFe] hydrogenase metallocenter assembly protein HybG G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229899.peg.2379 CDS CP012959.1 2348233 2348069 -1 - 165 Hydrogenase-2 operon protein hybE - none -
fig|6666666.229899.peg.2380 CDS CP012959.1 2349926 2348496 -2 - 1431 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24) Auxin biosynthesis;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis;
Tryptophan synthesis
fig|6666666.229899.peg.2381 CDS CP012959.1 2350213 2349935 -1 - 279 HigA protein (antitoxin to HigB) Toxin-antitoxin replicon stabilization systems
fig|6666666.229899.peg.2382 CDS CP012959.1 2350501 2350223 -1 - 279 HigB toxin protein Toxin-antitoxin replicon stabilization systems
fig|6666666.229899.peg.2383 CDS CP012959.1 2351597 2350596 -2 - 1002 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) Auxin biosynthesis;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229899.peg.2384 CDS CP012959.1 2352001 2351609 -1 - 393 putative - none -
fig|6666666.229899.peg.2385 CDS CP012959.1 2352665 2352075 -2 - 591 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229899.peg.2386 CDS CP012959.1 2354223 2352676 -3 - 1548 Anthranilate synthase, aminase component (EC 4.1.3.27) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229899.peg.2387 CDS CP012959.1 2354943 2354389 -3 - 555 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC 3.1.3.45) KDO2-Lipid A biosynthesis
fig|6666666.229899.peg.2388 CDS CP012959.1 2355878 2354943 -2 - 936 Arabinose 5-phosphate isomerase (EC 5.3.1.13) KDO2-Lipid A biosynthesis
fig|6666666.229899.peg.2389 CDS CP012959.1 2356524 2356375 -3 - 150 hypothetical protein - none -
fig|6666666.229899.peg.2390 CDS CP012959.1 2356561 2357436 1 + 876 Probable protease htpX homolog - none -
fig|6666666.229899.peg.2391 CDS CP012959.1 2357776 2358765 1 + 990 Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20) tRNA aminoacylation, Phe
fig|6666666.229899.peg.2392 CDS CP012959.1 2358785 2361175 2 + 2391 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) tRNA aminoacylation, Phe
fig|6666666.229899.peg.2393 CDS CP012959.1 2361179 2361475 2 + 297 Integration host factor alpha subunit DNA structural proteins, bacterial
fig|6666666.229899.peg.2394 CDS CP012959.1 2361527 2362015 2 + 489 Probable lipoprotein nlpC precursor - none -
fig|6666666.229899.peg.2395 CDS CP012959.1 2362535 2362182 -2 - 354 hypothetical protein - none -
fig|6666666.229899.peg.2396 CDS CP012959.1 2362692 2362576 -3 - 117 hypothetical protein - none -
fig|6666666.229899.peg.2397 CDS CP012959.1 2364120 2362702 -3 - 1419 Outer membrane component of tripartite multidrug resistance system Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria
fig|6666666.229899.peg.2398 CDS CP012959.1 2365267 2364140 -1 - 1128 ABC-type multidrug transport system, permease component - none -
fig|6666666.229899.peg.2399 CDS CP012959.1 2367884 2365269 -2 - 2616 ABC-type multidrug transport system, permease component - none -
fig|6666666.229899.rna.1 RNA CP012959.1 65446 65528 1 + 83 tRNA-Leu-CAA tRNAs
fig|6666666.229899.rna.2 RNA CP012959.1 89074 89001 -1 - 74 tRNA-Val-GAC tRNAs
fig|6666666.229899.rna.3 RNA CP012959.1 153295 153225 -1 - 71 tRNA-Pseudo-AAC - none -
fig|6666666.229899.rna.4 RNA CP012959.1 315202 315129 -1 - 74 tRNA-Met-CAT - none -
fig|6666666.229899.rna.5 RNA CP012959.1 317228 317156 -2 - 73 tRNA-Trp-CCA tRNAs
fig|6666666.229899.rna.6 RNA CP012959.1 317339 317266 -2 - 74 tRNA-Asp-GTC - none -
fig|6666666.229899.rna.7 RNA CP012959.1 317464 317346 -1 - 119 5S RNA - none -
fig|6666666.229899.rna.8 RNA CP012959.1 317630 317512 -2 - 119 5S RNA - none -
fig|6666666.229899.rna.9 RNA CP012959.1 320921 317879 -2 - 3043 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA - none -
fig|6666666.229899.rna.10 RNA CP012959.1 321203 321131 -2 - 73 tRNA-Glu-TTC - none -
fig|6666666.229899.rna.11 RNA CP012959.1 322838 321299 -2 - 1540 Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA - none -
fig|6666666.229899.rna.12 RNA CP012959.1 323099 323026 -2 - 74 tRNA-Pro-TGG - none -
fig|6666666.229899.rna.13 RNA CP012959.1 323177 323105 -2 - 73 tRNA-His-GTG - none -
fig|6666666.229899.rna.14 RNA CP012959.1 323285 323212 -2 - 74 tRNA-Arg-CCG tRNAs
fig|6666666.229899.rna.15 RNA CP012959.1 377943 377872 -3 - 72 tRNA-Gln-TTG - none -
fig|6666666.229899.rna.16 RNA CP012959.1 378055 377984 -1 - 72 tRNA-Gln-TTG - none -
fig|6666666.229899.rna.17 RNA CP012959.1 378169 378088 -1 - 82 tRNA-Leu-TAG - none -
fig|6666666.229899.rna.18 RNA CP012959.1 378251 378178 -2 - 74 tRNA-Met-CAT - none -
fig|6666666.229899.rna.19 RNA CP012959.1 394086 394158 3 + 73 tRNA-Asn-GTT - none -
fig|6666666.229899.rna.20 RNA CP012959.1 457495 457568 1 + 74 tRNA-Asp-GTC - none -
fig|6666666.229899.rna.21 RNA CP012959.1 457594 457667 1 + 74 tRNA-Asp-GTC - none -
fig|6666666.229899.rna.22 RNA CP012959.1 562230 562302 3 + 73 tRNA-Gly-GCC tRNAs
fig|6666666.229899.rna.23 RNA CP012959.1 562307 562390 2 + 84 tRNA-Leu-TAA - none -
fig|6666666.229899.rna.24 RNA CP012959.1 562445 562517 2 + 73 tRNA-Lys-TTT - none -
fig|6666666.229899.rna.25 RNA CP012959.1 591873 591800 -3 - 74 tRNA-Met-CAT - none -
fig|6666666.229899.rna.26 RNA CP012959.1 749755 749669 -1 - 87 tRNA-Ser-GGA tRNAs
fig|6666666.229899.rna.27 RNA CP012959.1 796667 796740 2 + 74 tRNA-Met-CAT - none -
fig|6666666.229899.rna.28 RNA CP012959.1 830649 830531 -3 - 119 5S RNA - none -
fig|6666666.229899.rna.29 RNA CP012959.1 833919 830877 -3 - 3043 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA - none -
fig|6666666.229899.rna.30 RNA CP012959.1 834274 834202 -1 - 73 tRNA-Ala-TGC - none -
fig|6666666.229899.rna.31 RNA CP012959.1 834400 834327 -1 - 74 tRNA-Ile-GAT - none -
fig|6666666.229899.rna.32 RNA CP012959.1 836023 834484 -1 - 1540 Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA - none -
fig|6666666.229899.rna.33 RNA CP012959.1 925508 925436 -2 - 73 tRNA-Thr-GGT - none -
fig|6666666.229899.rna.34 RNA CP012959.1 925586 925515 -2 - 72 tRNA-Gly-TCC - none -
fig|6666666.229899.rna.35 RNA CP012959.1 925711 925630 -1 - 82 tRNA-Tyr-GTA - none -
fig|6666666.229899.rna.36 RNA CP012959.1 925817 925745 -2 - 73 tRNA-Thr-TGT - none -
fig|6666666.229899.rna.37 RNA CP012959.1 1088998 1088926 -1 - 73 tRNA-Asn-GTT - none -
fig|6666666.229899.rna.38 RNA CP012959.1 1089078 1089006 -3 - 73 tRNA-Phe-GAA tRNAs
fig|6666666.229899.rna.39 RNA CP012959.1 1288343 1288270 -2 - 74 tRNA-Arg-TCT - none -
fig|6666666.229899.rna.40 RNA CP012959.1 1288453 1288380 -1 - 74 tRNA-Pro-TGG - none -
fig|6666666.229899.rna.41 RNA CP012959.1 1324089 1324179 3 + 91 tRNA-SeC(p)-TCA - none -
fig|6666666.229899.rna.42 RNA CP012959.1 1399816 1399906 1 + 91 tRNA-Ser-GCT - none -
fig|6666666.229899.rna.43 RNA CP012959.1 1399927 1400000 1 + 74 tRNA-Arg-ACG tRNAs
fig|6666666.229899.rna.44 RNA CP012959.1 1400058 1400131 3 + 74 tRNA-Arg-ACG tRNAs
fig|6666666.229899.rna.45 RNA CP012959.1 1436019 1437558 3 + 1540 Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA - none -
fig|6666666.229899.rna.46 RNA CP012959.1 1437642 1437715 3 + 74 tRNA-Ile-GAT - none -
fig|6666666.229899.rna.47 RNA CP012959.1 1437768 1437840 3 + 73 tRNA-Ala-TGC - none -
fig|6666666.229899.rna.48 RNA CP012959.1 1438123 1441165 1 + 3043 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA - none -
fig|6666666.229899.rna.49 RNA CP012959.1 1441393 1441511 1 + 119 5S RNA - none -
fig|6666666.229899.rna.50 RNA CP012959.1 1568574 1570113 3 + 1540 Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA - none -
fig|6666666.229899.rna.51 RNA CP012959.1 1570197 1570270 3 + 74 tRNA-Ile-GAT - none -
fig|6666666.229899.rna.52 RNA CP012959.1 1570323 1570395 3 + 73 tRNA-Ala-TGC - none -
fig|6666666.229899.rna.53 RNA CP012959.1 1570678 1573720 1 + 3043 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA - none -
fig|6666666.229899.rna.54 RNA CP012959.1 1573969 1574087 1 + 119 5S RNA - none -
fig|6666666.229899.rna.55 RNA CP012959.1 1604678 1604595 -2 - 84 tRNA-Leu-CAG tRNAs
fig|6666666.229899.rna.56 RNA CP012959.1 1632979 1632897 -1 - 83 tRNA-Leu-GAG tRNAs
fig|6666666.229899.rna.57 RNA CP012959.1 1764035 1765574 2 + 1540 Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA - none -
fig|6666666.229899.rna.58 RNA CP012959.1 1765670 1765742 2 + 73 tRNA-Glu-TTC - none -
fig|6666666.229899.rna.59 RNA CP012959.1 1765952 1768994 2 + 3043 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA - none -
fig|6666666.229899.rna.60 RNA CP012959.1 1769243 1769361 2 + 119 5S RNA - none -
fig|6666666.229899.rna.61 RNA CP012959.1 1803979 1803907 -1 - 73 tRNA-Val-TAC - none -
fig|6666666.229899.rna.62 RNA CP012959.1 1804082 1804010 -2 - 73 tRNA-Val-TAC - none -
fig|6666666.229899.rna.63 RNA CP012959.1 1804196 1804124 -2 - 73 tRNA-Val-TAC - none -
fig|6666666.229899.rna.64 RNA CP012959.1 1806009 1806081 3 + 73 tRNA-Ala-GGC tRNAs
fig|6666666.229899.rna.65 RNA CP012959.1 1814274 1814187 -3 - 88 tRNA-Leu-AAG - none -
fig|6666666.229899.rna.66 RNA CP012959.1 1886461 1886391 -1 - 71 tRNA-Cys-GCA tRNAs
fig|6666666.229899.rna.67 RNA CP012959.1 1886545 1886473 -1 - 73 tRNA-Gly-GCC tRNAs
fig|6666666.229899.rna.68 RNA CP012959.1 1893943 1894029 1 + 87 tRNA-Ser-TGA - none -
fig|6666666.229899.rna.69 RNA CP012959.1 1942502 1942574 2 + 73 tRNA-Lys-TTT - none -
fig|6666666.229899.rna.70 RNA CP012959.1 1942605 1942677 3 + 73 tRNA-Lys-TTT - none -
fig|6666666.229899.rna.71 RNA CP012959.1 1942706 1942779 2 + 74 tRNA-Lys-CTT - none -
fig|6666666.229899.rna.72 RNA CP012959.1 2138911 2140450 1 + 1540 Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA - none -
fig|6666666.229899.rna.73 RNA CP012959.1 2140546 2140618 1 + 73 tRNA-Glu-TTC - none -
fig|6666666.229899.rna.74 RNA CP012959.1 2140828 2143870 1 + 3043 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA - none -
fig|6666666.229899.rna.75 RNA CP012959.1 2144119 2144237 1 + 119 5S RNA - none -
fig|6666666.229899.rna.76 RNA CP012959.1 2181462 2181390 -3 - 73 tRNA-Gly-GCC tRNAs