fig|6666666.229900.peg.1 CDS AJME02000001.1 2805 955 -3 - 1851 RNA polymerase sigma factor RpoD CBSS-349161.4.peg.2417;
Macromolecular synthesis operon;
Transcription initiation, bacterial sigma factors
fig|6666666.229900.peg.2 CDS AJME02000001.1 4638 2881 -3 - 1758 DNA primase (EC 2.7.7.-) CBSS-349161.4.peg.2417;
Macromolecular synthesis operon
fig|6666666.229900.peg.3 CDS AJME02000001.1 4975 4760 -1 - 216 SSU ribosomal protein S21p Macromolecular synthesis operon;
Ribosome SSU bacterial
fig|6666666.229900.peg.4 CDS AJME02000001.1 5010 5177 3 + 168 hypothetical protein - none -
fig|6666666.229900.peg.5 CDS AJME02000001.1 5200 6228 1 + 1029 TsaD/Kae1/Qri7 protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Macromolecular synthesis operon;
YgjD and YeaZ;
YrdC-YciO-Sua5 protein family
fig|6666666.229900.peg.6 CDS AJME02000001.1 6293 6526 2 + 234 unknown - none -
fig|6666666.229900.peg.7 CDS AJME02000001.1 6529 7107 1 + 579 Thymidine kinase (EC 2.7.1.21) pyrimidine conversions
fig|6666666.229900.peg.8 CDS AJME02000001.1 9191 7176 -2 - 2016 DNA ligase (EC 6.5.1.2) DNA Repair Base Excision
fig|6666666.229900.peg.9 CDS AJME02000001.1 9185 9298 2 + 114 hypothetical protein - none -
fig|6666666.229900.peg.10 CDS AJME02000001.1 10332 9295 -3 - 1038 Cell division protein ZipA Bacterial Cytoskeleton
fig|6666666.229900.peg.11 CDS AJME02000001.1 10473 11297 3 + 825 Sulfate transporter, CysZ-type Cysteine Biosynthesis
fig|6666666.229900.peg.12 CDS AJME02000001.1 11411 12358 2 + 948 Cysteine synthase (EC 2.5.1.47) Cysteine Biosynthesis;
Methionine Biosynthesis
fig|6666666.229900.peg.13 CDS AJME02000001.1 12436 12323 -1 - 114 hypothetical protein - none -
fig|6666666.229900.peg.14 CDS AJME02000001.1 12724 12578 -1 - 147 hypothetical protein - none -
fig|6666666.229900.peg.15 CDS AJME02000001.1 13377 12796 -3 - 582 Hypothetical protein VC0266 (sugar utilization related?) VC0266
fig|6666666.229900.peg.16 CDS AJME02000001.1 14804 13713 -2 - 1092 GTP-binding and nucleic acid-binding protein YchF Universal GTPases
fig|6666666.229900.peg.17 CDS AJME02000001.1 15577 14993 -1 - 585 Peptidyl-tRNA hydrolase (EC 3.1.1.29) Cell division-ribosomal stress proteins cluster;
Sporulation-associated proteins with broader functions;
Transcription repair cluster;
Translation termination factors bacterial
fig|6666666.229900.peg.18 CDS AJME02000001.1 16197 15706 -3 - 492 FIG001943: hypothetical protein YajQ Broadly distributed proteins not in subsystems
fig|6666666.229900.peg.19 CDS AJME02000001.1 17152 16208 -1 - 945 Phosphoserine phosphatase (EC 3.1.3.3) Glycine and Serine Utilization;
Serine Biosynthesis;
Serine Biosynthesis
fig|6666666.229900.peg.20 CDS AJME02000001.1 17228 17905 2 + 678 Lipoate-protein ligase A Lipoic acid metabolism
fig|6666666.229900.peg.21 CDS AJME02000001.1 18278 18015 -2 - 264 SSU ribosomal protein S20p Ribosome SSU bacterial
fig|6666666.229900.peg.22 CDS AJME02000001.1 18546 20123 3 + 1578 Proposed peptidoglycan lipid II flippase MurJ Peptidoglycan lipid II flippase
fig|6666666.229900.peg.23 CDS AJME02000001.1 20201 21133 2 + 933 Riboflavin kinase (EC 2.7.1.26) / FMN adenylyltransferase (EC 2.7.7.2) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin, FMN and FAD metabolism in plants;
riboflavin to FAD;
riboflavin to FAD
fig|6666666.229900.peg.24 CDS AJME02000001.1 21133 21375 1 + 243 putative ORF-4 - none -
fig|6666666.229900.peg.25 CDS AJME02000001.1 21401 21607 2 + 207 FIG01055344: hypothetical protein - none -
fig|6666666.229900.peg.26 CDS AJME02000001.1 21645 24467 3 + 2823 Isoleucyl-tRNA synthetase (EC 6.1.1.5) tRNA aminoacylation, Ile
fig|6666666.229900.peg.27 CDS AJME02000001.1 24547 25041 1 + 495 Lipoprotein signal peptidase (EC 3.4.23.36) Lipoprotein Biosynthesis;
Signal peptidase
fig|6666666.229900.peg.28 CDS AJME02000001.1 25041 25985 3 + 945 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.229900.peg.29 CDS AJME02000001.1 26576 26421 -2 - 156 hypothetical protein - none -
fig|6666666.229900.peg.30 CDS AJME02000001.1 26578 26907 1 + 330 DNA uptake protein and related DNA-binding proteins - none -
fig|6666666.229900.peg.31 CDS AJME02000001.1 26933 27613 2 + 681 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) Heat shock dnaK gene cluster extended;
Housecleaning nucleoside triphosphate pyrophosphatases
fig|6666666.229900.peg.32 CDS AJME02000001.1 27652 27975 1 + 324 PlcB, ORFX, ORFP, ORFB, ORFA, ldh gene - none -
fig|6666666.229900.peg.33 CDS AJME02000001.1 27975 29144 3 + 1170 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB CBSS-630.2.peg.3360;
Heat shock dnaK gene cluster extended;
Heme and Siroheme Biosynthesis;
Queuosine-Archaeosine Biosynthesis
fig|6666666.229900.peg.34 CDS AJME02000001.1 29243 29899 2 + 657 Ribose 5-phosphate isomerase A (EC 5.3.1.6) D-ribose utilization;
Pentose phosphate pathway
fig|6666666.229900.peg.35 CDS AJME02000001.1 29919 31151 3 + 1233 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) Glycine and Serine Utilization;
Pyridoxin (Vitamin B6) Biosynthesis;
Serine Biosynthesis
fig|6666666.229900.peg.36 CDS AJME02000001.1 31462 32508 1 + 1047 iron chelatin ABC transporter periplasmic-binding protein - none -
fig|6666666.229900.peg.37 CDS AJME02000001.1 33236 32595 -2 - 642 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) D-Galacturonate and D-Glucuronate Utilization;
Entner-Doudoroff Pathway
fig|6666666.229900.peg.38 CDS AJME02000001.1 34648 33245 -1 - 1404 Uronate isomerase (EC 5.3.1.12) D-Galacturonate and D-Glucuronate Utilization
fig|6666666.229900.peg.39 CDS AJME02000001.1 35505 34660 -3 - 846 D-mannonate oxidoreductase (EC 1.1.1.57) D-Galacturonate and D-Glucuronate Utilization
fig|6666666.229900.peg.40 CDS AJME02000001.1 36461 35517 -2 - 945 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) D-Galacturonate and D-Glucuronate Utilization;
D-gluconate and ketogluconates metabolism;
Entner-Doudoroff Pathway
fig|6666666.229900.peg.41 CDS AJME02000001.1 37508 36516 -2 - 993 TRAP-type C4-dicarboxylate transport system, periplasmic component TRAP Transporter collection
fig|6666666.229900.peg.42 CDS AJME02000001.1 38221 39522 1 + 1302 TRAP-type C4-dicarboxylate transport system, large permease component TRAP Transporter collection
fig|6666666.229900.peg.43 CDS AJME02000001.1 39546 41921 3 + 2376 Alpha-glucosidase (EC 3.2.1.20) D-Galacturonate and D-Glucuronate Utilization;
Maltose and Maltodextrin Utilization
fig|6666666.229900.peg.44 CDS AJME02000001.1 41936 42691 2 + 756 Hexuronate utilization operon transcriptional repressor ExuR D-Galacturonate and D-Glucuronate Utilization
fig|6666666.229900.peg.45 CDS AJME02000001.1 42711 43895 3 + 1185 Mannonate dehydratase (EC 4.2.1.8) D-Galacturonate and D-Glucuronate Utilization
fig|6666666.229900.peg.46 CDS AJME02000001.1 43921 44856 1 + 936 hypothetical protein - none -
fig|6666666.229900.peg.47 CDS AJME02000001.1 44913 45803 3 + 891 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229900.peg.48 CDS AJME02000001.1 47583 45829 -3 - 1755 Putative sulfate permease - none -
fig|6666666.229900.peg.49 CDS AJME02000001.1 48020 50437 2 + 2418 ATP-dependent protease La (EC 3.4.21.53) Type I Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229900.peg.50 CDS AJME02000001.1 50564 52411 2 + 1848 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase
fig|6666666.229900.peg.51 CDS AJME02000001.1 52546 53172 1 + 627 Uracil phosphoribosyltransferase (EC 2.4.2.9) De Novo Pyrimidine Synthesis;
pyrimidine conversions
fig|6666666.229900.peg.52 CDS AJME02000001.1 53296 54549 1 + 1254 Uracil permease De Novo Pyrimidine Synthesis
fig|6666666.229900.peg.53 CDS AJME02000001.1 54683 54546 -2 - 138 hypothetical protein - none -
fig|6666666.229900.peg.54 CDS AJME02000001.1 54669 55373 3 + 705 Chromosomal replication initiator protein DnaA Cell Division Subsystem including YidCD;
DNA replication cluster 1
fig|6666666.229900.peg.55 CDS AJME02000001.1 55831 55379 -1 - 453 Putative protein-S-isoprenylcysteine methyltransferase - none -
fig|6666666.229900.peg.56 CDS AJME02000001.1 56498 55884 -2 - 615 Mlr7403 protein CBSS-290633.1.peg.1906;
CBSS-498211.3.peg.1415
fig|6666666.229900.peg.57 CDS AJME02000001.1 57786 56509 -3 - 1278 Histidyl-tRNA synthetase (EC 6.1.1.21) CBSS-498211.3.peg.1415;
tRNA aminoacylation, His
fig|6666666.229900.peg.58 CDS AJME02000001.1 58911 57808 -3 - 1104 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (EC 1.17.7.1) CBSS-498211.3.peg.1415;
CBSS-83331.1.peg.3039;
Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.229900.peg.59 CDS AJME02000001.1 59978 58923 -2 - 1056 FIG021952: putative membrane protein CBSS-498211.3.peg.1415
fig|6666666.229900.peg.60 CDS AJME02000001.1 60112 59999 -1 - 114 hypothetical protein - none -
fig|6666666.229900.peg.61 CDS AJME02000001.1 60673 60122 -1 - 552 Type IV pilus biogenesis protein PilF CBSS-498211.3.peg.1415
fig|6666666.229900.peg.62 CDS AJME02000001.1 61834 60695 -1 - 1140 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) CBSS-498211.3.peg.1415;
Conserved gene cluster associated with Met-tRNA formyltransferase;
RNA methylation
fig|6666666.229900.peg.63 CDS AJME02000001.1 62129 63178 2 + 1050 L-asparaginase (EC 3.5.1.1) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229900.peg.64 CDS AJME02000001.1 64724 63360 -2 - 1365 L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17) Glycine and Serine Utilization;
Glycine and Serine Utilization;
Pyruvate Alanine Serine Interconversions;
Pyruvate Alanine Serine Interconversions
fig|6666666.229900.peg.65 CDS AJME02000001.1 66058 64817 -1 - 1242 Serine transporter Glycine and Serine Utilization;
Pyruvate Alanine Serine Interconversions
fig|6666666.229900.peg.66 CDS AJME02000001.1 66715 66215 -1 - 501 Protein sprT - none -
fig|6666666.229900.peg.67 CDS AJME02000002.1 119 595 2 + 477 Transcription elongation factor GreA Transcription factors bacterial
fig|6666666.229900.peg.68 CDS AJME02000002.1 973 671 -1 - 303 FIG004454: RNA binding protein - none -
fig|6666666.229900.peg.69 CDS AJME02000002.1 1141 1440 1 + 300 Phage-related protein - none -
fig|6666666.229900.peg.70 CDS AJME02000002.1 1437 1733 3 + 297 FIG045511: hypothetical antitoxin (to FIG022160: hypothetical toxin) - none -
fig|6666666.229900.peg.71 CDS AJME02000002.1 2380 1766 -1 - 615 Riboflavin synthase eubacterial/eukaryotic (EC 2.5.1.9) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster;
riboflavin to FAD
fig|6666666.229900.peg.72 CDS AJME02000002.1 2407 3804 1 + 1398 Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps Multidrug Resistance Efflux Pumps;
Riboflavin, FMN and FAD metabolism in plants
fig|6666666.229900.peg.73 CDS AJME02000003.1 155 12 -2 - 144 hypothetical protein - none -
fig|6666666.229900.peg.74 CDS AJME02000003.1 952 173 -1 - 780 Ferredoxin--NADP(+) reductase (EC 1.18.1.2) Biogenesis of cytochrome c oxidases
fig|6666666.229900.peg.75 CDS AJME02000003.1 1328 1807 2 + 480 Translation initiation factor 3 Translation initiation factors bacterial
fig|6666666.229900.peg.76 CDS AJME02000003.1 2014 1808 -1 - 207 hypothetical protein - none -
fig|6666666.229900.peg.77 CDS AJME02000003.1 2283 2636 3 + 354 LSU ribosomal protein L20p - none -
fig|6666666.229900.peg.78 CDS AJME02000003.1 3522 3403 -3 - 120 hypothetical protein - none -
fig|6666666.229900.peg.79 CDS AJME02000003.1 3613 4566 1 + 954 Tagatose 1,6-bisphosphate aldolase (EC 4.1.2.40) - none -
fig|6666666.229900.peg.80 CDS AJME02000003.1 4581 6782 3 + 2202 PTS system, galactitol-specific IIC component (EC 2.7.1.69) - none -
fig|6666666.229900.peg.81 CDS AJME02000003.1 6805 7785 1 + 981 Galactitol-1-phosphate 5-dehydrogenase (EC 1.1.1.251) - none -
fig|6666666.229900.peg.82 CDS AJME02000003.1 7852 8610 1 + 759 Galactitol utilization operon repressor - none -
fig|6666666.229900.peg.83 CDS AJME02000003.1 10580 8730 -2 - 1851 1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis;
Pyridoxin (Vitamin B6) Biosynthesis;
Thiamin biosynthesis
fig|6666666.229900.peg.84 CDS AJME02000003.1 11555 10665 -2 - 891 Octaprenyl diphosphate synthase (EC 2.5.1.90) / Dimethylallyltransferase (EC 2.5.1.1) / (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10) / Geranylgeranyl diphosphate synthase (EC 2.5.1.29) Isoprenoid Biosynthesis;
Isoprenoid Biosynthesis;
Isoprenoid Biosynthesis: Interconversions;
Isoprenoinds for Quinones;
Isoprenoinds for Quinones;
Isoprenoinds for Quinones;
Isoprenoinds for Quinones;
Polyprenyl Diphosphate Biosynthesis;
Polyprenyl Diphosphate Biosynthesis;
Polyprenyl Diphosphate Biosynthesis
fig|6666666.229900.peg.85 CDS AJME02000003.1 11811 11566 -3 - 246 Exodeoxyribonuclease VII small subunit (EC 3.1.11.6) DNA repair, bacterial;
Purine salvage cluster
fig|6666666.229900.peg.86 CDS AJME02000003.1 12037 12933 1 + 897 Acetyl-coenzyme A carboxyl transferase beta chain (EC 6.4.1.2) Fatty Acid Biosynthesis FASII
fig|6666666.229900.peg.87 CDS AJME02000003.1 12956 14302 2 + 1347 Dihydrofolate synthase (EC 6.3.2.12) @ Folylpolyglutamate synthase (EC 6.3.2.17) Folate Biosynthesis;
Folate Biosynthesis
fig|6666666.229900.peg.88 CDS AJME02000003.1 15000 14359 -3 - 642 Hypothetical, related to broad specificity phosphatases COG0406 CBSS-196164.1.peg.461
fig|6666666.229900.peg.89 CDS AJME02000003.1 16519 15062 -1 - 1458 Cardiolipin synthetase (EC 2.7.8.-) Cardiolipin synthesis;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229900.peg.90 CDS AJME02000003.1 17441 16533 -2 - 909 Putative surface protein - none -
fig|6666666.229900.peg.91 CDS AJME02000003.1 17572 18249 1 + 678 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses;
Ribosome biogenesis bacterial;
tRNA modification Bacteria
fig|6666666.229900.peg.92 CDS AJME02000003.1 18294 19157 3 + 864 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229900.peg.93 CDS AJME02000003.1 19240 19563 1 + 324 Alkylphosphonate utilization operon protein PhnA - none -
fig|6666666.229900.peg.94 CDS AJME02000003.1 19706 21220 2 + 1515 Esterase/lipase - none -
fig|6666666.229900.peg.95 CDS AJME02000003.1 22848 21475 -3 - 1374 RND efflux system, outer membrane lipoprotein CmeC Multidrug Resistance Efflux Pumps
fig|6666666.229900.peg.96 CDS AJME02000003.1 24858 22924 -3 - 1935 Macrolide export ATP-binding/permease protein MacB (EC 3.6.3.-) Multidrug Resistance Efflux Pumps
fig|6666666.229900.peg.97 CDS AJME02000003.1 26062 24878 -1 - 1185 Macrolide-specific efflux protein MacA Multidrug Resistance Efflux Pumps
fig|6666666.229900.peg.98 CDS AJME02000003.1 26263 27954 1 + 1692 Glutaminyl-tRNA synthetase (EC 6.1.1.18) tRNA aminoacylation, Glu and Gln
fig|6666666.229900.peg.99 CDS AJME02000003.1 28056 27937 -3 - 120 hypothetical protein - none -
fig|6666666.229900.peg.100 CDS AJME02000003.1 28065 28352 3 + 288 HigB toxin protein Toxin-antitoxin replicon stabilization systems
fig|6666666.229900.peg.101 CDS AJME02000003.1 28362 28658 3 + 297 HigA protein (antitoxin to HigB) Toxin-antitoxin replicon stabilization systems
fig|6666666.229900.peg.102 CDS AJME02000003.1 28726 29127 1 + 402 YcgN (Fragment) CBSS-243277.1.peg.4359
fig|6666666.229900.peg.103 CDS AJME02000004.1 12 1145 3 + 1134 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) ## SSU rRNA m5C967 Conserved gene cluster associated with Met-tRNA formyltransferase;
RNA methylation
fig|6666666.229900.peg.104 CDS AJME02000004.1 1169 2545 2 + 1377 Trk system potassium uptake protein TrkA Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Hyperosmotic potassium uptake;
Potassium homeostasis;
Potassium homeostasis
fig|6666666.229900.peg.105 CDS AJME02000004.1 2655 3050 3 + 396 Large-conductance mechanosensitive channel Potassium homeostasis
fig|6666666.229900.peg.106 CDS AJME02000004.1 3145 3579 1 + 435 Ribonuclease E inhibitor RraB RNA processing and degradation, bacterial
fig|6666666.229900.peg.107 CDS AJME02000004.1 3630 4349 3 + 720 probable periplasmic protein NMA1059 - none -
fig|6666666.229900.peg.108 CDS AJME02000004.1 4444 5055 1 + 612 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) G3E family of P-loop GTPases (metallocenter biosynthesis);
Peptidyl-prolyl cis-trans isomerase;
Potassium homeostasis
fig|6666666.229900.peg.109 CDS AJME02000004.1 5966 5472 -2 - 495 Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48) LMPTP YfkJ cluster;
Protein deglycation
fig|6666666.229900.peg.110 CDS AJME02000004.1 7332 6001 -3 - 1332 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase Methylthiotransferases;
Ribosomal protein S12p Asp methylthiotransferase
fig|6666666.229900.peg.111 CDS AJME02000004.1 7543 7827 1 + 285 hypothetical protein - none -
fig|6666666.229900.peg.112 CDS AJME02000004.1 7778 8140 2 + 363 FIG00696564: hypothetical protein - none -
fig|6666666.229900.peg.113 CDS AJME02000004.1 8674 8324 -1 - 351 Arsenate reductase (EC 1.20.4.1) Anaerobic respiratory reductases;
Arsenic resistance;
Transcription repair cluster
fig|6666666.229900.peg.114 CDS AJME02000004.1 8748 9809 3 + 1062 Putative permease PerM (= YfgO) - none -
fig|6666666.229900.peg.115 CDS AJME02000004.1 10702 9944 -1 - 759 Uridine phosphorylase (EC 2.4.2.3) pyrimidine conversions
fig|6666666.229900.peg.116 CDS AJME02000004.1 11189 10737 -2 - 453 Regulatory protein AsnC CBSS-262728.1.peg.1737
fig|6666666.229900.peg.117 CDS AJME02000004.1 11355 12347 3 + 993 Aspartate--ammonia ligase (EC 6.3.1.1) CBSS-262728.1.peg.1737;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229900.peg.118 CDS AJME02000004.1 13386 12403 -3 - 984 tRNA dihydrouridine synthase A - none -
fig|6666666.229900.peg.119 CDS AJME02000004.1 14780 13389 -2 - 1392 Chloride channel protein - none -
fig|6666666.229900.peg.120 CDS AJME02000004.1 15023 16027 2 + 1005 Ornithine carbamoyltransferase (EC 2.1.3.3) Arginine Deiminase Pathway;
Arginine and Ornithine Degradation
fig|6666666.229900.peg.121 CDS AJME02000004.1 16037 16969 2 + 933 Carbamate kinase (EC 2.7.2.2) Arginine Deiminase Pathway;
Arginine and Ornithine Degradation;
Polyamine Metabolism
fig|6666666.229900.peg.122 CDS AJME02000004.1 17086 18615 1 + 1530 Arginine/ornithine antiporter ArcD Arginine Deiminase Pathway;
Arginine and Ornithine Degradation;
Polyamine Metabolism
fig|6666666.229900.peg.123 CDS AJME02000004.1 18706 18930 1 + 225 Transcriptional regulator, AsnC family - none -
fig|6666666.229900.peg.124 CDS AJME02000006.1 639 1016 3 + 378 Mobile element protein - none -
fig|6666666.229900.peg.125 CDS AJME02000006.1 1402 2025 1 + 624 Dephospho-CoA kinase (EC 2.7.1.24) Coenzyme A Biosynthesis
fig|6666666.229900.peg.126 CDS AJME02000006.1 2015 2227 2 + 213 FIG003276: zinc-binding protein - none -
fig|6666666.229900.peg.127 CDS AJME02000006.1 2227 2499 1 + 273 FIG00904058: hypothetical protein - none -
fig|6666666.229900.peg.128 CDS AJME02000006.1 2896 4269 1 + 1374 Sodium/glycine symporter GlyP - none -
fig|6666666.229900.peg.129 CDS AJME02000006.1 4498 4821 1 + 324 Ribosome hibernation protein YfiA Ribosome activity modulation
fig|6666666.229900.peg.130 CDS AJME02000006.1 5276 5524 2 + 249 unknown - none -
fig|6666666.229900.peg.131 CDS AJME02000006.1 6438 6139 -3 - 300 DNA-binding protein Fis DNA structural proteins, bacterial
fig|6666666.229900.peg.132 CDS AJME02000006.1 7476 6526 -3 - 951 tRNA dihydrouridine synthase B (EC 1.-.-.-) tRNA modification Bacteria
fig|6666666.229900.peg.133 CDS AJME02000006.1 8605 7721 -1 - 885 Ribosomal protein L11 methyltransferase (EC 2.1.1.-) Heat shock dnaK gene cluster extended;
Ribosome biogenesis bacterial
fig|6666666.229900.peg.134 CDS AJME02000006.1 9169 8618 -1 - 552 Protein involved in cell division - none -
fig|6666666.229900.peg.135 CDS AJME02000006.1 10615 9179 -1 - 1437 Pantothenate:Na+ symporter (TC 2.A.21.1.1) CBSS-221988.1.peg.1679;
Coenzyme A Biosynthesis
fig|6666666.229900.peg.136 CDS AJME02000006.1 10899 10612 -3 - 288 FIG003021: Membrane protein CBSS-221988.1.peg.1679
fig|6666666.229900.peg.137 CDS AJME02000006.1 12257 10908 -2 - 1350 FOG: TPR repeat - none -
fig|6666666.229900.peg.138 CDS AJME02000006.1 13176 12415 -3 - 762 Periplasmic protein TonB, links inner and outer membranes - none -
fig|6666666.229900.peg.139 CDS AJME02000006.1 13365 13231 -3 - 135 hypothetical protein - none -
fig|6666666.229900.peg.140 CDS AJME02000006.1 14820 13474 -3 - 1347 Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14) CBSS-221988.1.peg.1679;
Fatty Acid Biosynthesis FASII
fig|6666666.229900.peg.141 CDS AJME02000006.1 15331 14864 -1 - 468 Biotin carboxyl carrier protein of acetyl-CoA carboxylase CBSS-221988.1.peg.1679;
Fatty Acid Biosynthesis FASII
fig|6666666.229900.peg.142 CDS AJME02000006.1 15348 15500 3 + 153 hypothetical protein - none -
fig|6666666.229900.peg.143 CDS AJME02000006.1 15931 15455 -1 - 477 3-dehydroquinate dehydratase II (EC 4.2.1.10) CBSS-221988.1.peg.1679;
Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate);
Quinate degradation
fig|6666666.229900.peg.144 CDS AJME02000006.1 17031 16030 -3 - 1002 O-succinylbenzoate synthase (EC 4.2.1.113) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo;
Muconate lactonizing enzyme family
fig|6666666.229900.peg.145 CDS AJME02000006.1 17341 17012 -1 - 330 Nucleotidyltransferase (EC 2.7.7.-) - none -
fig|6666666.229900.peg.146 CDS AJME02000006.1 17742 17323 -3 - 420 Nucleotidyltransferase substrate binding protein, HI0074 - none -
fig|6666666.229900.peg.147 CDS AJME02000006.1 18639 17782 -3 - 858 Naphthoate synthase (EC 4.1.3.36) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229900.peg.148 CDS AJME02000006.1 19518 18751 -3 - 768 Triosephosphate isomerase (EC 5.3.1.1) CBSS-331978.3.peg.2915;
Glycolysis and Gluconeogenesis
fig|6666666.229900.peg.149 CDS AJME02000006.1 19691 20134 2 + 444 Histone acetyltransferase HPA2 and related acetyltransferases CBSS-216591.1.peg.168
fig|6666666.229900.peg.150 CDS AJME02000006.1 21577 20210 -1 - 1368 Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22) Heme and Siroheme Biosynthesis
fig|6666666.229900.peg.151 CDS AJME02000006.1 22031 21597 -2 - 435 Periplasmic/membrane protein associated with DUF414 - none -
fig|6666666.229900.peg.152 CDS AJME02000006.1 22604 22044 -2 - 561 Protein of unknown function DUF414 - none -
fig|6666666.229900.peg.153 CDS AJME02000007.1 1424 552 -2 - 873 Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) Serine-glyoxylate cycle;
TCA Cycle
fig|6666666.229900.peg.154 CDS AJME02000007.1 2604 1435 -3 - 1170 Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) Serine-glyoxylate cycle;
TCA Cycle
fig|6666666.229900.peg.155 CDS AJME02000007.1 2800 2648 -1 - 153 hypothetical protein - none -
fig|6666666.229900.peg.156 CDS AJME02000007.1 4013 2790 -2 - 1224 Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61) Dehydrogenase complexes;
TCA Cycle
fig|6666666.229900.peg.157 CDS AJME02000007.1 6946 4139 -1 - 2808 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) Dehydrogenase complexes;
TCA Cycle
fig|6666666.229900.peg.158 CDS AJME02000007.1 7863 7225 -3 - 639 Hypothetical metal-binding enzyme, YcbL homolog CBSS-228400.4.peg.1623
fig|6666666.229900.peg.159 CDS AJME02000007.1 8386 7940 -1 - 447 FIG001587: exported protein CBSS-228400.4.peg.1623
fig|6666666.229900.peg.160 CDS AJME02000007.1 10073 8565 -2 - 1509 L,D-transpeptidase YcbB CBSS-228400.4.peg.1623
fig|6666666.229900.peg.161 CDS AJME02000007.1 12208 10151 -1 - 2058 Tail-specific protease precursor (EC 3.4.21.102) - none -
fig|6666666.229900.peg.162 CDS AJME02000007.1 12893 12282 -2 - 612 ProQ: influences osmotic activation of compatible solute ProP - none -
fig|6666666.229900.peg.163 CDS AJME02000007.1 13111 14394 1 + 1284 Paraquat-inducible protein A Oxidative stress
fig|6666666.229900.peg.164 CDS AJME02000007.1 14357 17014 2 + 2658 Paraquat-inducible protein B Oxidative stress
fig|6666666.229900.peg.165 CDS AJME02000007.1 18333 17089 -3 - 1245 Tripeptide aminopeptidase (EC 3.4.11.4) - none -
fig|6666666.229900.peg.166 CDS AJME02000007.1 18597 19715 3 + 1119 Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) Polyamine Metabolism
fig|6666666.229900.peg.167 CDS AJME02000007.1 19699 20559 1 + 861 Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) Polyamine Metabolism
fig|6666666.229900.peg.168 CDS AJME02000007.1 20559 21332 3 + 774 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) Polyamine Metabolism
fig|6666666.229900.peg.169 CDS AJME02000007.1 21463 22560 1 + 1098 ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1) Polyamine Metabolism
fig|6666666.229900.peg.170 CDS AJME02000007.1 22684 23580 1 + 897 Cytidine deaminase (EC 3.5.4.5) Murein hydrolase regulation and cell death;
pyrimidine conversions;
tRNA modification Bacteria
fig|6666666.229900.peg.171 CDS AJME02000007.1 24976 23660 -1 - 1317 Seryl-tRNA synthetase (EC 6.1.1.11) CBSS-326442.4.peg.1852;
Glycine and Serine Utilization;
tRNA aminoacylation, Ser
fig|6666666.229900.peg.172 CDS AJME02000007.1 25283 26923 2 + 1641 C4-dicarboxylate transporter DcuB - none -
fig|6666666.229900.peg.173 CDS AJME02000008.1 46 984 1 + 939 Molybdopterin biosynthesis protein MoeA Molybdenum cofactor biosynthesis
fig|6666666.229900.peg.174 CDS AJME02000008.1 1000 1731 1 + 732 Molybdopterin biosynthesis protein MoeB Molybdenum cofactor biosynthesis
fig|6666666.229900.peg.175 CDS AJME02000008.1 2451 3308 3 + 858 FIG000875: Thioredoxin domain-containing protein EC-YbbN - none -
fig|6666666.229900.peg.176 CDS AJME02000008.1 3368 4321 2 + 954 Thioredoxin reductase (EC 1.8.1.9) Thioredoxin-disulfide reductase;
pyrimidine conversions
fig|6666666.229900.peg.177 CDS AJME02000008.1 4427 6190 2 + 1764 Transport ATP-binding protein CydD Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229900.peg.178 CDS AJME02000008.1 6190 7923 1 + 1734 Transport ATP-binding protein CydC Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229900.peg.179 CDS AJME02000008.1 8434 8306 -1 - 129 hypothetical protein - none -
fig|6666666.229900.peg.180 CDS AJME02000008.1 9216 8431 -3 - 786 serine/threonine protein kinase - none -
fig|6666666.229900.peg.181 CDS AJME02000008.1 9758 9237 -2 - 522 unknown - none -
fig|6666666.229900.peg.182 CDS AJME02000008.1 9960 10544 3 + 585 Putative lipoprotein yceB precursor - none -
fig|6666666.229900.peg.183 CDS AJME02000008.1 11742 11320 -3 - 423 ROK family Glucokinase with ambiguous substrate specificity - none -
fig|6666666.229900.peg.184 CDS AJME02000008.1 12234 11749 -3 - 486 ROK family Glucokinase with ambiguous substrate specificity - none -
fig|6666666.229900.peg.185 CDS AJME02000008.1 13018 12284 -1 - 735 Phosphatidylglycerophosphatase B (EC 3.1.3.27) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Osmotic stress cluster
fig|6666666.229900.peg.186 CDS AJME02000008.1 13101 13754 3 + 654 GTP cyclohydrolase II (EC 3.5.4.25) Molybdenum cofactor biosynthesis;
Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster
fig|6666666.229900.peg.187 CDS AJME02000008.1 14033 14773 2 + 741 FIG00698611: hypothetical protein - none -
fig|6666666.229900.peg.188 CDS AJME02000008.1 15558 14935 -3 - 624 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229900.peg.189 CDS AJME02000008.1 16781 15987 -2 - 795 DNA for glycosyltransferase, lytic transglycosylase, dTDP-4-rhamnose reductase Rhamnose containing glycans
fig|6666666.229900.peg.190 CDS AJME02000008.1 17584 16781 -1 - 804 Exodeoxyribonuclease III (EC 3.1.11.2) DNA repair, bacterial
fig|6666666.229900.peg.191 CDS AJME02000008.1 19553 18135 -2 - 1419 Undecaprenyl-phosphate galactosephosphotransferase (EC 2.7.8.6) - none -
fig|6666666.229900.peg.192 CDS AJME02000008.1 20463 19516 -3 - 948 O antigen biosynthesis rhamnosyltransferase rfbN (EC 2.4.1.-) - none -
fig|6666666.229900.peg.193 CDS AJME02000008.1 25303 20996 -1 - 4308 Glycosyltransferase (EC 2.4.1.-) - none -
fig|6666666.229900.peg.194 CDS AJME02000008.1 26496 25300 -3 - 1197 Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40) Rhamnose containing glycans;
Teichoic and lipoteichoic acids biosynthesis
fig|6666666.229900.peg.195 CDS AJME02000008.1 27292 26498 -1 - 795 Teichoic acid translocation permease protein TagG Teichoic and lipoteichoic acids biosynthesis
fig|6666666.229900.peg.196 CDS AJME02000008.1 27848 27309 -2 - 540 dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) Capsular heptose biosynthesis;
Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229900.peg.197 CDS AJME02000008.1 28729 27851 -1 - 879 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229900.peg.198 CDS AJME02000008.1 29521 28730 -1 - 792 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229900.peg.199 CDS AJME02000008.1 30747 29680 -3 - 1068 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229900.peg.200 CDS AJME02000008.1 31947 30817 -3 - 1131 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) Murein Hydrolases;
Peptidoglycan Biosynthesis
fig|6666666.229900.peg.201 CDS AJME02000008.1 32758 31949 -1 - 810 Glucosyl-3-phosphoglycerate synthase (EC 2.4.1.266) - none -
fig|6666666.229900.peg.202 CDS AJME02000008.1 33708 32827 -3 - 882 Glycosyltransferase - none -
fig|6666666.229900.peg.203 CDS AJME02000008.1 34898 33708 -2 - 1191 DNA for glycosyltransferase, lytic transglycosylase, dTDP-4-rhamnose reductase Rhamnose containing glycans
fig|6666666.229900.peg.204 CDS AJME02000008.1 35683 34907 -1 - 777 Lipopolysaccharide core biosynthesis glycosyltransferase WadA - none -
fig|6666666.229900.peg.205 CDS AJME02000008.1 35814 37337 3 + 1524 putative flippase - none -
fig|6666666.229900.peg.206 CDS AJME02000008.1 37334 38290 2 + 957 Polysaccharide polymerization protein - none -
fig|6666666.229900.peg.207 CDS AJME02000008.1 38399 38650 2 + 252 YefM protein (antitoxin to YoeB) Toxin-antitoxin replicon stabilization systems
fig|6666666.229900.peg.208 CDS AJME02000008.1 38647 38901 1 + 255 YoeB toxin protein Toxin-antitoxin replicon stabilization systems
fig|6666666.229900.peg.209 CDS AJME02000008.1 38914 39657 1 + 744 Probable transmembrane protein - none -
fig|6666666.229900.peg.210 CDS AJME02000008.1 39834 40661 3 + 828 DNA ligase (ATP) (EC 6.5.1.1) DNA ligases
fig|6666666.229900.peg.211 CDS AJME02000008.1 42967 40793 -1 - 2175 ATP-dependent DNA helicase UvrD/PcrA DNA repair, bacterial UvrD and related helicases
fig|6666666.229900.peg.212 CDS AJME02000008.1 44489 43140 -2 - 1350 Low-affinity gluconate/H+ symporter GntU D-gluconate and ketogluconates metabolism
fig|6666666.229900.peg.213 CDS AJME02000008.1 44707 45225 1 + 519 Gluconokinase (EC 2.7.1.12) D-gluconate and ketogluconates metabolism;
Entner-Doudoroff Pathway
fig|6666666.229900.peg.214 CDS AJME02000008.1 45344 45222 -2 - 123 hypothetical protein - none -
fig|6666666.229900.peg.215 CDS AJME02000008.1 46293 45295 -3 - 999 Gluconate utilization system Gnt-I transcriptional repressor D-gluconate and ketogluconates metabolism
fig|6666666.229900.peg.216 CDS AJME02000008.1 47166 46342 -3 - 825 Formate dehydrogenase chain D (EC 1.2.1.2) Formate hydrogenase
fig|6666666.229900.peg.217 CDS AJME02000008.1 47387 50497 2 + 3111 Formate dehydrogenase N alpha subunit (EC 1.2.1.2) @ selenocysteine-containing Formate dehydrogenase;
Formate hydrogenase
fig|6666666.229900.peg.218 CDS AJME02000008.1 50595 51425 3 + 831 Formate dehydrogenase O beta subunit (EC 1.2.1.2) Formate dehydrogenase;
Formate hydrogenase
fig|6666666.229900.peg.219 CDS AJME02000008.1 51418 52131 1 + 714 Formate dehydrogenase -O, gamma subunit (EC 1.2.1.2) Anaerobic respiratory reductases;
Formate hydrogenase
fig|6666666.229900.peg.220 CDS AJME02000008.1 52288 52404 1 + 117 hypothetical protein - none -
fig|6666666.229900.peg.221 CDS AJME02000008.1 55044 52759 -3 - 2286 [NiFe] hydrogenase metallocenter assembly protein HypF G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229900.peg.222 CDS AJME02000008.1 55391 55936 2 + 546 Hydrogenase-4 component A - none -
fig|6666666.229900.peg.223 CDS AJME02000008.1 55970 57991 2 + 2022 Hydrogenase-4 component B (EC 1.-.-.-) / Formate hydrogenlyase subunit 3 Formate hydrogenase;
Formate hydrogenase
fig|6666666.229900.peg.224 CDS AJME02000008.1 58002 58964 3 + 963 Hydrogenase-4 component C (EC 1.-.-.-) Formate hydrogenase
fig|6666666.229900.peg.225 CDS AJME02000008.1 58977 60422 3 + 1446 Na(+) H(+) antiporter subunit A - none -
fig|6666666.229900.peg.226 CDS AJME02000008.1 60433 61071 1 + 639 Hydrogenase-4 component E (EC 1.-.-.-) Formate hydrogenase
fig|6666666.229900.peg.227 CDS AJME02000008.1 61076 62614 2 + 1539 Hydrogenase-4 component F - none -
fig|6666666.229900.peg.228 CDS AJME02000008.1 62634 64364 3 + 1731 Formate hydrogenlyase subunit 5 Formate hydrogenase
fig|6666666.229900.peg.229 CDS AJME02000008.1 64378 65025 1 + 648 Formate hydrogenlyase complex 3 iron-sulfur protein; Formate hydrogenlyase subunit 6; Ni,Fe-hydrogenase III medium subunit Formate hydrogenase
fig|6666666.229900.peg.230 CDS AJME02000009.1 381 656 3 + 276 Mobile element protein - none -
fig|6666666.229900.peg.231 CDS AJME02000010.1 126 827 3 + 702 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses
fig|6666666.229900.peg.232 CDS AJME02000010.1 832 2025 1 + 1194 Bicyclomycin resistance protein - none -
fig|6666666.229900.peg.233 CDS AJME02000010.1 2197 2832 1 + 636 ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA Biogenesis of c-type cytochromes
fig|6666666.229900.peg.234 CDS AJME02000010.1 2837 3502 2 + 666 ABC transporter involved in cytochrome c biogenesis, CcmB subunit Biogenesis of c-type cytochromes
fig|6666666.229900.peg.235 CDS AJME02000010.1 3513 4250 3 + 738 Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE Biogenesis of c-type cytochromes
fig|6666666.229900.peg.236 CDS AJME02000010.1 4301 4474 2 + 174 Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE Biogenesis of c-type cytochromes
fig|6666666.229900.peg.237 CDS AJME02000010.1 4471 4989 1 + 519 Cytochrome c-type biogenesis protein CcmE, heme chaperone Biogenesis of c-type cytochromes
fig|6666666.229900.peg.238 CDS AJME02000010.1 4989 6947 3 + 1959 Cytochrome c heme lyase subunit CcmF Biogenesis of c-type cytochromes;
Copper homeostasis
fig|6666666.229900.peg.239 CDS AJME02000010.1 6976 7521 1 + 546 Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase Biogenesis of c-type cytochromes;
Periplasmic disulfide interchange
fig|6666666.229900.peg.240 CDS AJME02000010.1 7521 8072 3 + 552 Cytochrome c heme lyase subunit CcmL Biogenesis of c-type cytochromes
fig|6666666.229900.peg.241 CDS AJME02000010.1 8072 8995 2 + 924 Cytochrome c heme lyase subunit CcmH Biogenesis of c-type cytochromes;
Copper homeostasis
fig|6666666.229900.peg.242 CDS AJME02000010.1 9205 9615 1 + 411 Parvulin-like peptidyl-prolyl isomerase - none -
fig|6666666.229900.peg.243 CDS AJME02000010.1 9625 9753 1 + 129 Parvulin-like peptidyl-prolyl isomerase - none -
fig|6666666.229900.peg.244 CDS AJME02000010.1 9771 10061 3 + 291 hypothetical protein - none -
fig|6666666.229900.peg.245 CDS AJME02000010.1 10638 12161 3 + 1524 Cytochrome c552 precursor (EC 1.7.2.2) Soluble cytochromes and functionally related electron carriers
fig|6666666.229900.peg.246 CDS AJME02000010.1 12184 12900 1 + 717 Cytochrome c-type protein NrfB precursor - none -
fig|6666666.229900.peg.247 CDS AJME02000010.1 12897 13574 3 + 678 NrfC protein - none -
fig|6666666.229900.peg.248 CDS AJME02000010.1 13571 14536 2 + 966 NrfD protein - none -
fig|6666666.229900.peg.249 CDS AJME02000010.1 14657 14782 2 + 126 hypothetical protein - none -
fig|6666666.229900.peg.250 CDS AJME02000010.1 15102 14779 -3 - 324 hypothetical protein - none -
fig|6666666.229900.peg.251 CDS AJME02000010.1 15124 17034 1 + 1911 Cytochrome c-type heme lyase subunit nrfE, nitrite reductase complex assembly - none -
fig|6666666.229900.peg.252 CDS AJME02000010.1 17027 17557 2 + 531 Putative thiol:disulfide oxidoreductase, nitrite reductase complex assembly - none -
fig|6666666.229900.peg.253 CDS AJME02000010.1 17554 18603 1 + 1050 Cytochrome c-type heme lyase subunit nrfF, nitrite reductase complex assembly - none -
fig|6666666.229900.peg.254 CDS AJME02000010.1 18600 19799 3 + 1200 NAD(FAD)-utilizing dehydrogenases - none -
fig|6666666.229900.peg.255 CDS AJME02000010.1 21655 20018 -1 - 1638 NAD-dependent malic enzyme (EC 1.1.1.38) Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229900.peg.256 CDS AJME02000010.1 21806 22156 2 + 351 Transcriptional regulator, XRE family - none -
fig|6666666.229900.peg.257 CDS AJME02000010.1 22928 22353 -2 - 576 Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1) Oxidative stress;
Protection from Reactive Oxygen Species
fig|6666666.229900.peg.258 CDS AJME02000010.1 23116 23871 1 + 756 Ubiquinone/menaquinone biosynthesis methyltransferase UbiE (EC 2.1.1.-) Menaquinone and Phylloquinone Biosynthesis;
Ubiquinone Biosynthesis
fig|6666666.229900.peg.259 CDS AJME02000010.1 24994 23918 -1 - 1077 DNA recombination and repair protein RecF Cell Division Subsystem including YidCD;
DNA repair, bacterial RecFOR pathway;
DNA replication cluster 1
fig|6666666.229900.peg.260 CDS AJME02000010.1 26098 24998 -1 - 1101 DNA polymerase III beta subunit (EC 2.7.7.7) Cell Division Subsystem including YidCD;
DNA replication cluster 1
fig|6666666.229900.peg.261 CDS AJME02000010.1 27470 26109 -2 - 1362 Chromosomal replication initiator protein DnaA Cell Division Subsystem including YidCD;
DNA replication cluster 1
fig|6666666.229900.peg.262 CDS AJME02000010.1 27888 28022 3 + 135 LSU ribosomal protein L34p Cell Division Subsystem including YidCD;
RNA modification cluster
fig|6666666.229900.peg.263 CDS AJME02000010.1 28068 28403 3 + 336 Ribonuclease P protein component (EC 3.1.26.5) Cell Division Subsystem including YidCD;
RNA modification cluster;
tRNA processing
fig|6666666.229900.peg.264 CDS AJME02000010.1 28358 28621 2 + 264 Protein YidD Cell Division Subsystem including YidCD;
RNA modification cluster
fig|6666666.229900.peg.265 CDS AJME02000010.1 28663 30252 1 + 1590 Inner membrane protein translocase component YidC, long form CTP synthase (EC 6.3.4.2) cluster;
Cell Division Subsystem including YidCD;
RNA modification cluster
fig|6666666.229900.peg.266 CDS AJME02000010.1 30381 31736 3 + 1356 GTPase and tRNA-U34 5-formylation enzyme TrmE Cell Division Subsystem including YidCD;
RNA modification and chromosome partitioning cluster;
RNA modification cluster;
Universal GTPases;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229900.peg.267 CDS AJME02000010.1 32748 31840 -3 - 909 GTP-binding protein Era Bacterial Cell Division;
CBSS-176299.4.peg.1292;
Glycyl-tRNA synthetase containing cluster;
Universal GTPases
fig|6666666.229900.peg.268 CDS AJME02000010.1 33425 32745 -2 - 681 Ribonuclease III (EC 3.1.26.3) CBSS-176299.4.peg.1292;
RNA processing and degradation, bacterial
fig|6666666.229900.peg.269 CDS AJME02000010.1 34454 33432 -2 - 1023 Signal peptidase I (EC 3.4.21.89) CBSS-176299.4.peg.1292;
Signal peptidase
fig|6666666.229900.peg.270 CDS AJME02000010.1 36261 34465 -3 - 1797 Translation elongation factor LepA Heat shock dnaK gene cluster extended;
Translation elongation factors bacterial;
Universal GTPases
fig|6666666.229900.peg.271 CDS AJME02000010.1 36814 36431 -1 - 384 Pyruvate formate-lyase (EC 2.3.1.54) Butanol Biosynthesis;
Fermentations: Mixed acid
fig|6666666.229900.peg.272 CDS AJME02000010.1 37100 37768 2 + 669 Uracil-DNA glycosylase, family 1 DNA Repair Base Excision;
Uracil-DNA glycosylase
fig|6666666.229900.peg.273 CDS AJME02000010.1 37790 38569 2 + 780 UPF0246 protein YaaA - none -
fig|6666666.229900.peg.274 CDS AJME02000010.1 38571 39137 3 + 567 FIG00696199: hypothetical protein - none -
fig|6666666.229900.peg.275 CDS AJME02000010.1 39137 40057 2 + 921 Cobalt-zinc-cadmium resistance protein Cobalt-zinc-cadmium resistance
fig|6666666.229900.peg.276 CDS AJME02000010.1 40119 41084 3 + 966 6-phosphofructokinase (EC 2.7.1.11) Glycolysis and Gluconeogenesis
fig|6666666.229900.peg.277 CDS AJME02000010.1 41345 41184 -2 - 162 23S rRNA (Uracil-5-) -methyltransferase rumB (EC 2.1.1.-) RNA methylation
fig|6666666.229900.peg.278 CDS AJME02000010.1 42355 41429 -1 - 927 23S rRNA (Uracil-5-) -methyltransferase rumB (EC 2.1.1.-) RNA methylation
fig|6666666.229900.peg.279 CDS AJME02000010.1 43403 42357 -2 - 1047 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) Murein Hydrolases;
Recycling of Peptidoglycan Amino Sugars
fig|6666666.229900.peg.280 CDS AJME02000010.1 43758 43405 -3 - 354 Predicted periplasmic lipoprotein - none -
fig|6666666.229900.peg.281 CDS AJME02000010.1 44109 43759 -3 - 351 Bis(5@1-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17) pyrimidine conversions
fig|6666666.229900.peg.282 CDS AJME02000010.1 44452 45273 1 + 822 Formate efflux transporter (TC 2.A.44 family) Fermentations: Mixed acid
fig|6666666.229900.peg.283 CDS AJME02000010.1 45372 47684 3 + 2313 Pyruvate formate-lyase (EC 2.3.1.54) Butanol Biosynthesis;
Fermentations: Mixed acid
fig|6666666.229900.peg.284 CDS AJME02000010.1 47828 48568 2 + 741 Pyruvate formate-lyase activating enzyme (EC 1.97.1.4) Fermentations: Mixed acid
fig|6666666.229900.peg.285 CDS AJME02000010.1 48710 49573 2 + 864 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229900.peg.286 CDS AJME02000010.1 50964 49651 -3 - 1314 Putative cell division protein precursor - none -
fig|6666666.229900.peg.287 CDS AJME02000010.1 51814 51071 -1 - 744 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229900.peg.288 CDS AJME02000010.1 51925 52656 1 + 732 UDP-2,3-diacylglucosamine diphosphatase (EC 3.6.1.54) KDO2-Lipid A biosynthesis;
Llipid A biosynthesis cluster
fig|6666666.229900.peg.289 CDS AJME02000010.1 52649 53155 2 + 507 Arabinose efflux permease - none -
fig|6666666.229900.peg.290 CDS AJME02000010.1 53218 53895 1 + 678 YheO-like PAS domain - none -
fig|6666666.229900.peg.291 CDS AJME02000010.1 55175 53961 -2 - 1215 Tyrosine-specific transport protein - none -
fig|6666666.229900.peg.292 CDS AJME02000010.1 56713 55337 -1 - 1377 Tryptophanase (EC 4.1.99.1) - none -
fig|6666666.229900.peg.293 CDS AJME02000011.1 76 342 1 + 267 Transcriptional regulator, AsnC family - none -
fig|6666666.229900.peg.294 CDS AJME02000011.1 1621 440 -1 - 1182 Acetyl-CoA acetyltransferase (EC 2.3.1.9) Butanol Biosynthesis;
Isoprenoid Biosynthesis;
Polyhydroxybutyrate metabolism;
Serine-glyoxylate cycle
fig|6666666.229900.peg.295 CDS AJME02000011.1 2982 1639 -3 - 1344 Short chain fatty acids transporter Polyhydroxybutyrate metabolism
fig|6666666.229900.peg.296 CDS AJME02000011.1 3650 2985 -2 - 666 Acetyl-CoA:acetoacetyl-CoA transferase, beta subunit (EC 2.8.3.8) - none -
fig|6666666.229900.peg.297 CDS AJME02000011.1 4252 3662 -1 - 591 Acetyl-CoA:acetoacetyl-CoA transferase, alpha subunit (EC 2.8.3.8) - none -
fig|6666666.229900.peg.298 CDS AJME02000011.1 4589 5485 2 + 897 Transcriptional regulators, LysR family - none -
fig|6666666.229900.peg.299 CDS AJME02000011.1 5735 6046 2 + 312 SSU ribosomal protein S10p (S20e) Ribosome SSU bacterial
fig|6666666.229900.peg.300 CDS AJME02000011.1 6063 6689 3 + 627 LSU ribosomal protein L3p (L3e) - none -
fig|6666666.229900.peg.301 CDS AJME02000011.1 6705 7307 3 + 603 LSU ribosomal protein L4p (L1e) - none -
fig|6666666.229900.peg.302 CDS AJME02000011.1 7304 7606 2 + 303 LSU ribosomal protein L23p (L23Ae) - none -
fig|6666666.229900.peg.303 CDS AJME02000011.1 7627 8448 1 + 822 LSU ribosomal protein L2p (L8e) - none -
fig|6666666.229900.peg.304 CDS AJME02000011.1 8539 8748 1 + 210 SSU ribosomal protein S19p (S15e) Ribosome SSU bacterial
fig|6666666.229900.peg.305 CDS AJME02000011.1 8759 9091 2 + 333 LSU ribosomal protein L22p (L17e) - none -
fig|6666666.229900.peg.306 CDS AJME02000011.1 9108 9815 3 + 708 SSU ribosomal protein S3p (S3e) Ribosome SSU bacterial
fig|6666666.229900.peg.307 CDS AJME02000011.1 9829 10239 1 + 411 LSU ribosomal protein L16p (L10e) - none -
fig|6666666.229900.peg.308 CDS AJME02000011.1 10239 10430 3 + 192 LSU ribosomal protein L29p (L35e) - none -
fig|6666666.229900.peg.309 CDS AJME02000011.1 10430 10687 2 + 258 SSU ribosomal protein S17p (S11e) Ribosome SSU bacterial
fig|6666666.229900.peg.310 CDS AJME02000012.1 306 1259 3 + 954 Transaldolase (EC 2.2.1.2) Fructose utilization;
Pentose phosphate pathway
fig|6666666.229900.peg.311 CDS AJME02000012.1 1278 3389 3 + 2112 Transketolase (EC 2.2.1.1) Pentose phosphate pathway
fig|6666666.229900.peg.312 CDS AJME02000012.1 3847 3458 -1 - 390 Endoribonuclease L-PSP - none -
fig|6666666.229900.peg.313 CDS AJME02000012.1 4378 3920 -1 - 459 Regulatory protein RecX DNA repair system including RecA, MutS and a hypothetical protein;
RecA and RecX
fig|6666666.229900.peg.314 CDS AJME02000012.1 5518 4460 -1 - 1059 RecA protein DNA repair, bacterial;
DNA repair, bacterial RecFOR pathway;
DNA repair system including RecA, MutS and a hypothetical protein;
RecA and RecX
fig|6666666.229900.peg.315 CDS AJME02000012.1 7498 5666 -1 - 1833 Glutathione-regulated potassium-efflux system ATP-binding protein Potassium homeostasis
fig|6666666.229900.peg.316 CDS AJME02000013.1 1027 152 -1 - 876 33 kDa chaperonin (Heat shock protein 33) (HSP33) CBSS-584.1.peg.3382
fig|6666666.229900.peg.317 CDS AJME02000013.1 1511 1095 -2 - 417 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) CBSS-584.1.peg.3382;
Cell division-ribosomal stress proteins cluster;
DNA replication cluster 1;
Heat shock dnaK gene cluster extended
fig|6666666.229900.peg.318 CDS AJME02000013.1 2183 1524 -2 - 660 FIG001957: putative hydrolase CBSS-584.1.peg.3382
fig|6666666.229900.peg.319 CDS AJME02000013.1 2222 2812 2 + 591 ADP compounds hydrolase NudE (EC 3.6.1.-) Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229900.peg.320 CDS AJME02000013.1 3698 2817 -2 - 882 Transcriptional regulator, AraC family - none -
fig|6666666.229900.peg.321 CDS AJME02000013.1 4395 3769 -3 - 627 membrane protein ykgB - none -
fig|6666666.229900.peg.322 CDS AJME02000013.1 4764 6770 3 + 2007 oligopeptide transporter - none -
fig|6666666.229900.peg.323 CDS AJME02000013.1 6832 7260 1 + 429 hypothetical protein - none -
fig|6666666.229900.peg.324 CDS AJME02000013.1 7298 8107 2 + 810 3@1(2@1),5@1-bisphosphate nucleotidase (EC 3.1.3.7) - none -
fig|6666666.229900.peg.325 CDS AJME02000013.1 8189 9673 2 + 1485 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) Entner-Doudoroff Pathway;
Pentose phosphate pathway
fig|6666666.229900.peg.326 CDS AJME02000013.1 9926 10624 2 + 699 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type Entner-Doudoroff Pathway;
Pentose phosphate pathway
fig|6666666.229900.peg.327 CDS AJME02000013.1 10637 11095 2 + 459 Uncharacterized virulence-associated protein D - none -
fig|6666666.229900.peg.328 CDS AJME02000013.1 11630 11484 -2 - 147 hypothetical protein - none -
fig|6666666.229900.peg.329 CDS AJME02000013.1 11651 13105 2 + 1455 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) D-gluconate and ketogluconates metabolism;
Pentose phosphate pathway
fig|6666666.229900.peg.330 CDS AJME02000013.1 14010 13891 -3 - 120 hypothetical protein - none -
fig|6666666.229900.peg.331 CDS AJME02000013.1 14012 14959 2 + 948 Magnesium and cobalt transport protein CorA Magnesium transport
fig|6666666.229900.peg.332 CDS AJME02000013.1 14975 15535 2 + 561 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) CBSS-630.2.peg.3360
fig|6666666.229900.peg.333 CDS AJME02000013.1 15560 15853 2 + 294 COG1872 - none -
fig|6666666.229900.peg.334 CDS AJME02000013.1 15970 16629 1 + 660 Oxygen-insensitive NAD(P)H nitroreductase (EC 1.-.-.-) / Dihydropteridine reductase (EC 1.5.1.34) - none -
fig|6666666.229900.peg.335 CDS AJME02000013.1 16694 17395 2 + 702 Phosphoglycerol transferase I (EC 2.7.8.20) Synthesis of osmoregulated periplasmic glucans
fig|6666666.229900.peg.336 CDS AJME02000013.1 17438 18223 2 + 786 Phosphoglycerol transferase I (EC 2.7.8.20) Synthesis of osmoregulated periplasmic glucans
fig|6666666.229900.peg.337 CDS AJME02000013.1 19484 18636 -2 - 849 FIG00697497: hypothetical protein - none -
fig|6666666.229900.peg.338 CDS AJME02000013.1 22450 19658 -1 - 2793 FIG00696772: hypothetical protein - none -
fig|6666666.229900.peg.339 CDS AJME02000013.1 22632 22450 -3 - 183 hypothetical protein - none -
fig|6666666.229900.peg.340 CDS AJME02000013.1 22915 22667 -1 - 249 hypothetical protein - none -
fig|6666666.229900.peg.341 CDS AJME02000013.1 23736 22930 -3 - 807 Phage FAD/FMN-containing dehydrogenase - none -
fig|6666666.229900.peg.342 CDS AJME02000013.1 25451 23760 -2 - 1692 FIG00698772: hypothetical protein - none -
fig|6666666.229900.peg.343 CDS AJME02000013.1 26422 25457 -1 - 966 Phage protein - none -
fig|6666666.229900.peg.344 CDS AJME02000013.1 27423 26425 -3 - 999 Phage protein - none -
fig|6666666.229900.peg.345 CDS AJME02000013.1 30731 27435 -2 - 3297 Phage tail length tape-measure protein Phage tail proteins;
Phage tail proteins 2
fig|6666666.229900.peg.346 CDS AJME02000013.1 30746 30961 2 + 216 hypothetical protein - none -
fig|6666666.229900.peg.347 CDS AJME02000013.1 31196 30984 -2 - 213 hypothetical protein - none -
fig|6666666.229900.peg.348 CDS AJME02000013.1 31594 31175 -1 - 420 Phage protein - none -
fig|6666666.229900.peg.349 CDS AJME02000013.1 32387 31641 -2 - 747 Phage protein - none -
fig|6666666.229900.peg.350 CDS AJME02000013.1 32660 32388 -2 - 273 hypothetical protein - none -
fig|6666666.229900.peg.351 CDS AJME02000013.1 33103 32657 -1 - 447 Phage protein - none -
fig|6666666.229900.peg.352 CDS AJME02000013.1 33615 33103 -3 - 513 Phage protein - none -
fig|6666666.229900.peg.353 CDS AJME02000013.1 34548 33625 -3 - 924 hypothetical protein - none -
fig|6666666.229900.peg.354 CDS AJME02000013.1 34977 34612 -3 - 366 Phage protein - none -
fig|6666666.229900.peg.355 CDS AJME02000013.1 35783 34974 -2 - 810 FIG00698681: hypothetical protein - none -
fig|6666666.229900.peg.356 CDS AJME02000013.1 35953 36087 1 + 135 hypothetical protein - none -
fig|6666666.229900.peg.357 CDS AJME02000013.1 36716 36225 -2 - 492 possible bacteriophage Mu G-like protein - none -
fig|6666666.229900.peg.358 CDS AJME02000013.1 38072 36819 -2 - 1254 Phage (Mu-like) virion morphogenesis protein - none -
fig|6666666.229900.peg.359 CDS AJME02000013.1 39567 38065 -3 - 1503 Mu-like prophage FluMu protein gp29 - none -
fig|6666666.229900.peg.360 CDS AJME02000013.1 41184 39571 -3 - 1614 Phage terminase, large subunit Phage packaging machinery
fig|6666666.229900.peg.361 CDS AJME02000013.1 41720 41181 -2 - 540 Phage terminase, small subunit Phage packaging machinery
fig|6666666.229900.peg.362 CDS AJME02000013.1 42034 41729 -1 - 306 Phage protein - none -
fig|6666666.229900.peg.363 CDS AJME02000013.1 42155 42036 -2 - 120 hypothetical protein - none -
fig|6666666.229900.peg.364 CDS AJME02000013.1 42387 42115 -3 - 273 hypothetical protein - none -
fig|6666666.229900.peg.365 CDS AJME02000013.1 42930 42484 -3 - 447 Phage protein - none -
fig|6666666.229900.peg.366 CDS AJME02000013.1 43499 42921 -2 - 579 Phage lysin #murein transglycosylase - none -
fig|6666666.229900.peg.367 CDS AJME02000013.1 43933 43565 -1 - 369 Phage protein - none -
fig|6666666.229900.peg.368 CDS AJME02000013.1 44087 44437 2 + 351 Phage protein - none -
fig|6666666.229900.peg.369 CDS AJME02000013.1 44439 44816 3 + 378 hypothetical protein - none -
fig|6666666.229900.peg.370 CDS AJME02000013.1 45066 44818 -3 - 249 hypothetical protein - none -
fig|6666666.229900.peg.371 CDS AJME02000013.1 45737 45090 -2 - 648 hypothetical protein - none -
fig|6666666.229900.peg.372 CDS AJME02000013.1 45925 45764 -1 - 162 hypothetical protein - none -
fig|6666666.229900.peg.373 CDS AJME02000013.1 46555 46322 -1 - 234 hypothetical protein - none -
fig|6666666.229900.peg.374 CDS AJME02000013.1 46608 46844 3 + 237 hypothetical protein - none -
fig|6666666.229900.peg.375 CDS AJME02000013.1 46855 47214 1 + 360 hypothetical protein - none -
fig|6666666.229900.peg.376 CDS AJME02000013.1 47291 47467 2 + 177 hypothetical protein - none -
fig|6666666.229900.peg.377 CDS AJME02000013.1 47479 47784 1 + 306 Transcriptional regulator, IclR family - none -
fig|6666666.229900.peg.378 CDS AJME02000013.1 47796 48740 3 + 945 FIG00697991: hypothetical protein - none -
fig|6666666.229900.peg.379 CDS AJME02000013.1 48752 50524 2 + 1773 Phage transposase - none -
fig|6666666.229900.peg.380 CDS AJME02000013.1 50537 51715 2 + 1179 Eha - none -
fig|6666666.229900.peg.381 CDS AJME02000013.1 51719 52060 2 + 342 hypothetical protein - none -
fig|6666666.229900.peg.382 CDS AJME02000013.1 52074 52595 3 + 522 inhibition of exonuclease digestion of Mu DNA - none -
fig|6666666.229900.peg.383 CDS AJME02000013.1 52831 53022 1 + 192 hypothetical protein - none -
fig|6666666.229900.peg.384 CDS AJME02000013.1 53032 53196 1 + 165 hypothetical protein - none -
fig|6666666.229900.peg.385 CDS AJME02000013.1 53456 53569 2 + 114 hypothetical protein - none -
fig|6666666.229900.peg.386 CDS AJME02000013.1 53572 54048 1 + 477 FIG00698199: hypothetical protein - none -
fig|6666666.229900.peg.387 CDS AJME02000013.1 54045 54371 3 + 327 hypothetical protein - none -
fig|6666666.229900.peg.388 CDS AJME02000013.1 54648 55007 3 + 360 hypothetical protein - none -
fig|6666666.229900.peg.389 CDS AJME02000013.1 55367 55510 2 + 144 hypothetical protein - none -
fig|6666666.229900.peg.390 CDS AJME02000013.1 55589 56059 2 + 471 hypothetical protein - none -
fig|6666666.229900.peg.391 CDS AJME02000013.1 56063 56413 2 + 351 Transcriptional regulator - none -
fig|6666666.229900.peg.392 CDS AJME02000013.1 56596 57060 1 + 465 Phosphoglycerol transferase I (EC 2.7.8.20) Synthesis of osmoregulated periplasmic glucans
fig|6666666.229900.peg.393 CDS AJME02000013.1 57506 57363 -2 - 144 hypothetical protein - none -
fig|6666666.229900.peg.394 CDS AJME02000013.1 58426 58277 -1 - 150 hypothetical protein - none -
fig|6666666.229900.peg.395 CDS AJME02000013.1 59532 58795 -3 - 738 COG1496: Uncharacterized conserved protein - none -
fig|6666666.229900.peg.396 CDS AJME02000013.1 60508 59534 -1 - 975 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) RNA pseudouridine syntheses;
Ribosome biogenesis bacterial
fig|6666666.229900.peg.397 CDS AJME02000013.1 60615 61403 3 + 789 Probable component of the lipoprotein assembly complex (forms a complex with YaeT, YfgL, and NlpB) Lipopolysaccharide assembly
fig|6666666.229900.peg.398 CDS AJME02000013.1 62016 61441 -3 - 576 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) 5-FCL-like protein;
Folate Biosynthesis;
One-carbon metabolism by tetrahydropterines;
Serine-glyoxylate cycle
fig|6666666.229900.peg.399 CDS AJME02000013.1 62615 62310 -2 - 306 Z-ring-associated protein ZapA Bacterial Cytoskeleton
fig|6666666.229900.peg.400 CDS AJME02000013.1 62609 63343 2 + 735 FIG001590: Putative conserved exported protein precursor CBSS-87626.3.peg.3639
fig|6666666.229900.peg.401 CDS AJME02000013.1 63358 64659 1 + 1302 Xaa-Pro aminopeptidase (EC 3.4.11.9) Aminopeptidases (EC 3.4.11.-);
CBSS-87626.3.peg.3639
fig|6666666.229900.peg.402 CDS AJME02000013.1 64968 64813 -3 - 156 hypothetical protein - none -
fig|6666666.229900.peg.403 CDS AJME02000013.1 65154 65402 3 + 249 SSU ribosomal protein S16p Ribosome SSU bacterial
fig|6666666.229900.peg.404 CDS AJME02000013.1 65428 65955 1 + 528 16S rRNA processing protein RimM Ribosome biogenesis bacterial
fig|6666666.229900.peg.405 CDS AJME02000013.1 66021 66770 3 + 750 tRNA (Guanine37-N1) -methyltransferase (EC 2.1.1.31) RNA methylation;
Ribosome biogenesis bacterial;
tRNA modification Bacteria
fig|6666666.229900.peg.406 CDS AJME02000013.1 66796 67146 1 + 351 LSU ribosomal protein L19p - none -
fig|6666666.229900.peg.407 CDS AJME02000013.1 67744 67256 -1 - 489 Rod shape-determining protein MreD Bacterial Cell Division;
Bacterial Cytoskeleton;
CBSS-354.1.peg.2917
fig|6666666.229900.peg.408 CDS AJME02000013.1 68817 67744 -3 - 1074 Rod shape-determining protein MreC Bacterial Cell Division;
Bacterial Cytoskeleton;
CBSS-354.1.peg.2917
fig|6666666.229900.peg.409 CDS AJME02000013.1 69942 68887 -3 - 1056 Rod shape-determining protein MreB Bacterial Cell Division;
Bacterial Cytoskeleton
fig|6666666.229900.peg.410 CDS AJME02000013.1 70192 72597 1 + 2406 3@1-to-5@1 exoribonuclease RNase R RNA processing and degradation, bacterial
fig|6666666.229900.peg.411 CDS AJME02000013.1 72594 73331 3 + 738 23S rRNA (guanosine-2@1-O-) -methyltransferase rlmB (EC 2.1.1.-) RNA methylation
fig|6666666.229900.peg.412 CDS AJME02000013.1 73664 75106 2 + 1443 Glycerol-3-phosphate transporter - none -
fig|6666666.229900.peg.413 CDS AJME02000013.1 75338 76420 2 + 1083 Glycerophosphoryl diester phosphodiesterase, periplasmic (EC 3.1.4.46) - none -
fig|6666666.229900.peg.414 CDS AJME02000013.1 77594 76476 -2 - 1119 Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake CBSS-272943.3.peg.1367;
Conserved gene cluster associated with Met-tRNA formyltransferase;
YrdC-YciO-Sua5 protein family
fig|6666666.229900.peg.415 CDS AJME02000013.1 77822 77625 -2 - 198 hypothetical protein - none -
fig|6666666.229900.peg.416 CDS AJME02000013.1 78261 77812 -3 - 450 LSU ribosomal protein L9p Primosomal replication protein N clusters with ribosomal proteins
fig|6666666.229900.peg.417 CDS AJME02000013.1 78507 78277 -3 - 231 SSU ribosomal protein S18p @ SSU ribosomal protein S18p, zinc-independent Primosomal replication protein N clusters with ribosomal proteins;
Ribosome SSU bacterial;
Ribosome SSU bacterial
fig|6666666.229900.peg.418 CDS AJME02000013.1 78846 78520 -3 - 327 Primosomal replication protein N Primosomal replication protein N clusters with ribosomal proteins
fig|6666666.229900.peg.419 CDS AJME02000013.1 79210 78833 -1 - 378 SSU ribosomal protein S6p Primosomal replication protein N clusters with ribosomal proteins;
Ribosome SSU bacterial
fig|6666666.229900.peg.420 CDS AJME02000013.1 79985 79362 -2 - 624 SOS-response repressor and protease LexA (EC 3.4.21.88) DNA repair, bacterial
fig|6666666.229900.peg.421 CDS AJME02000013.1 80193 82631 3 + 2439 Glycerol-3-phosphate acyltransferase (EC 2.3.1.15) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229900.peg.422 CDS AJME02000013.1 84516 82672 -3 - 1845 Lipid A export ATP-binding/permease protein MsbA - none -
fig|6666666.229900.peg.423 CDS AJME02000013.1 85521 84604 -3 - 918 transcriptional regulator MtrA - none -
fig|6666666.229900.peg.424 CDS AJME02000013.1 85625 85966 2 + 342 Possible carboxymuconolactone decarboxylase family protein (EC 4.1.1.44) - none -
fig|6666666.229900.peg.425 CDS AJME02000013.1 87106 86063 -1 - 1044 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) LOS core oligosaccharide biosynthesis
fig|6666666.229900.peg.426 CDS AJME02000013.1 87196 87921 1 + 726 3-deoxy-D-manno-octulosonic acid kinase (EC 2.7.1.-) - none -
fig|6666666.229900.peg.427 CDS AJME02000013.1 88464 87970 -3 - 495 Phosphopantetheine adenylyltransferase (EC 2.7.7.3) CBSS-266117.6.peg.1260;
CBSS-269801.1.peg.1715;
Coenzyme A Biosynthesis
fig|6666666.229900.peg.428 CDS AJME02000013.1 89748 88465 -3 - 1284 3-deoxy-D-manno-octulosonic-acid transferase (EC 2.-.-.-) KDO2-Lipid A biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.229900.peg.429 CDS AJME02000013.1 89847 90608 3 + 762 Lipopolysaccharide biosynthesis glycosyltransferase - none -
fig|6666666.229900.peg.430 CDS AJME02000013.1 90963 90667 -3 - 297 HigA protein (antitoxin to HigB) Toxin-antitoxin replicon stabilization systems
fig|6666666.229900.peg.431 CDS AJME02000013.1 91255 90980 -1 - 276 HigB toxin protein Toxin-antitoxin replicon stabilization systems
fig|6666666.229900.peg.432 CDS AJME02000013.1 92738 91371 -2 - 1368 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229900.peg.433 CDS AJME02000013.1 92924 94000 2 + 1077 hypothetical tRNA/rRNA methyltransferase yfiF [EC:2.1.1.-] RNA methylation;
tRNA modification Bacteria
fig|6666666.229900.peg.434 CDS AJME02000013.1 94288 94067 -1 - 222 4Fe-4S ferredoxin, iron-sulfur binding - none -
fig|6666666.229900.peg.435 CDS AJME02000013.1 94395 95090 3 + 696 Probable ribonuclease HI0526 precursor - none -
fig|6666666.229900.peg.436 CDS AJME02000013.1 95203 96366 1 + 1164 Phosphoglycerate kinase (EC 2.7.2.3) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis
fig|6666666.229900.peg.437 CDS AJME02000013.1 96431 97510 2 + 1080 Fructose-bisphosphate aldolase class II (EC 4.1.2.13) Glycolysis and Gluconeogenesis
fig|6666666.229900.peg.438 CDS AJME02000013.1 97685 97512 -2 - 174 hypothetical protein - none -
fig|6666666.229900.peg.439 CDS AJME02000013.1 97548 98861 3 + 1314 O-antigen ligase LOS core oligosaccharide biosynthesis
fig|6666666.229900.peg.440 CDS AJME02000013.1 98854 99777 1 + 924 Lysophospholipase L2 (EC 3.1.1.5) Triacylglycerol metabolism
fig|6666666.229900.peg.441 CDS AJME02000013.1 100633 99815 -1 - 819 Cof protein, HD superfamily hydrolase Housecleaning nucleoside triphosphate pyrophosphatases
fig|6666666.229900.peg.442 CDS AJME02000013.1 100852 101649 1 + 798 Acetolactate synthase large subunit (EC 2.2.1.6) - none -
fig|6666666.229900.peg.443 CDS AJME02000013.1 101646 101786 3 + 141 hypothetical protein - none -
fig|6666666.229900.peg.444 CDS AJME02000014.1 789 1703 3 + 915 Pantothenate kinase (EC 2.7.1.33) Coenzyme A Biosynthesis
fig|6666666.229900.peg.445 CDS AJME02000014.1 4178 1758 -2 - 2421 DNA gyrase subunit B (EC 5.99.1.3) Cell Division Subsystem including YidCD;
DNA gyrase subunits;
DNA replication cluster 1;
DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.229900.peg.446 CDS AJME02000014.1 6164 4275 -2 - 1890 ATP-dependent DNA helicase RecQ DNA repair, bacterial RecFOR pathway
fig|6666666.229900.peg.447 CDS AJME02000014.1 6475 6161 -1 - 315 Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly Biogenesis of cytochrome c oxidases
fig|6666666.229900.peg.448 CDS AJME02000014.1 6598 6717 1 + 120 hypothetical protein - none -
fig|6666666.229900.peg.449 CDS AJME02000014.1 6735 7985 3 + 1251 Diaminopimelate decarboxylase (EC 4.1.1.20) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229900.peg.450 CDS AJME02000014.1 8643 8038 -3 - 606 probable integral membrane protein Cj0014c - none -
fig|6666666.229900.peg.451 CDS AJME02000014.1 8843 9403 2 + 561 DNA-3-methyladenine glycosylase (EC 3.2.2.20) CBSS-326442.4.peg.1852;
DNA Repair Base Excision
fig|6666666.229900.peg.452 CDS AJME02000014.1 9469 11811 1 + 2343 Outer membrane protein Imp, required for envelope biogenesis / Organic solvent tolerance protein precursor Lipopolysaccharide assembly
fig|6666666.229900.peg.453 CDS AJME02000014.1 12364 11900 -1 - 465 Xanthine-guanine phosphoribosyltransferase (EC 2.4.2.22) Purine conversions
fig|6666666.229900.peg.454 CDS AJME02000014.1 12479 13939 2 + 1461 Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3) Dipeptidases (EC 3.4.13.-);
Recycling of Peptidoglycan Amino Acids
fig|6666666.229900.peg.455 CDS AJME02000015.1 370 206 -1 - 165 Mobile element protein - none -
fig|6666666.229900.peg.456 CDS AJME02000015.1 3558 2554 -3 - 1005 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis;
Pyridoxin (Vitamin B6) Biosynthesis
fig|6666666.229900.peg.457 CDS AJME02000015.1 3729 4439 3 + 711 Guanylate kinase (EC 2.7.4.8) CBSS-323097.3.peg.2594;
Purine conversions
fig|6666666.229900.peg.458 CDS AJME02000015.1 4497 4763 3 + 267 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) CBSS-176299.4.peg.1292;
RNA polymerase bacterial
fig|6666666.229900.peg.459 CDS AJME02000015.1 4809 6932 3 + 2124 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II / Guanosine-3@1,5@1-bis(diphosphate) 3@1-pyrophosphohydrolase (EC 3.1.7.2) CBSS-176299.4.peg.1292;
CBSS-176299.4.peg.1292;
Stringent Response, (p)ppGpp metabolism;
Stringent Response, (p)ppGpp metabolism
fig|6666666.229900.peg.460 CDS AJME02000015.1 6934 9015 1 + 2082 ATP-dependent DNA helicase RecG (EC 3.6.1.-) - none -
fig|6666666.229900.peg.461 CDS AJME02000015.1 9008 9502 2 + 495 Chorismate--pyruvate lyase (EC 4.1.3.40) Ubiquinone Biosynthesis
fig|6666666.229900.peg.462 CDS AJME02000015.1 9536 10363 2 + 828 Glutamate racemase (EC 5.1.1.3) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Peptidoglycan Biosynthesis
fig|6666666.229900.peg.463 CDS AJME02000017.1 496 1680 1 + 1185 Lipoprotein releasing system transmembrane protein LolC Lipopolysaccharide assembly;
Lipoprotein sorting system
fig|6666666.229900.peg.464 CDS AJME02000017.1 1695 2381 3 + 687 Lipoprotein releasing system ATP-binding protein LolD Lipopolysaccharide assembly;
Lipoprotein sorting system
fig|6666666.229900.peg.465 CDS AJME02000017.1 2381 3631 2 + 1251 Lipoprotein releasing system transmembrane protein LolE Lipopolysaccharide assembly;
Lipoprotein sorting system
fig|6666666.229900.peg.466 CDS AJME02000017.1 3732 4811 3 + 1080 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha (EC 2.5.1.54) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229900.peg.467 CDS AJME02000017.1 4942 4820 -1 - 123 hypothetical protein - none -
fig|6666666.229900.peg.468 CDS AJME02000017.1 4957 6363 1 + 1407 Replicative DNA helicase (EC 3.6.1.-) - none -
fig|6666666.229900.peg.469 CDS AJME02000017.1 6387 7469 3 + 1083 Alanine racemase (EC 5.1.1.1) ## biosynthetic Alanine biosynthesis;
Pyruvate Alanine Serine Interconversions
fig|6666666.229900.peg.470 CDS AJME02000017.1 7485 9134 3 + 1650 Glucose-6-phosphate isomerase (EC 5.3.1.9) Glycolysis and Gluconeogenesis
fig|6666666.229900.peg.471 CDS AJME02000017.1 10339 9455 -1 - 885 hypothetical protein - none -
fig|6666666.229900.peg.472 CDS AJME02000018.1 723 202 -3 - 522 Translation elongation factor P Translation elongation factor P lysylation;
Translation elongation factors bacterial
fig|6666666.229900.peg.473 CDS AJME02000018.1 802 1821 1 + 1020 Lysine 2,3-aminomutase (EC 5.4.3.2) - none -
fig|6666666.229900.peg.474 CDS AJME02000018.1 1992 3305 3 + 1314 Cell envelope opacity-associated protein A - none -
fig|6666666.229900.peg.475 CDS AJME02000018.1 3367 3741 1 + 375 opacity associated protein - none -
fig|6666666.229900.peg.476 CDS AJME02000018.1 4737 3832 -3 - 906 DNA recombination-dependent growth factor C DNA repair, bacterial
fig|6666666.229900.peg.477 CDS AJME02000018.1 4800 5240 3 + 441 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) A Hypothetical Protein Related to Proline Metabolism;
CBSS-630.2.peg.3360;
Proline Synthesis
fig|6666666.229900.peg.478 CDS AJME02000018.1 5243 6136 2 + 894 Tyrosine recombinase XerD - none -
fig|6666666.229900.peg.479 CDS AJME02000018.1 6300 7598 3 + 1299 Cell division trigger factor (EC 5.2.1.8) Bacterial Cell Division
fig|6666666.229900.peg.480 CDS AJME02000018.1 8662 7775 -1 - 888 HflC protein Hfl operon;
Scaffold proteins for [4Fe-4S] cluster assembly (MRP family)
fig|6666666.229900.peg.481 CDS AJME02000018.1 9915 8662 -3 - 1254 HflK protein Hfl operon;
Scaffold proteins for [4Fe-4S] cluster assembly (MRP family)
fig|6666666.229900.peg.482 CDS AJME02000018.1 10730 10011 -2 - 720 4@1-phosphopantetheinyl transferase (EC 2.7.8.-) Fatty Acid Biosynthesis FASII
fig|6666666.229900.peg.483 CDS AJME02000018.1 12063 10789 -3 - 1275 Threonine synthase (EC 4.2.3.1) Threonine and Homoserine Biosynthesis
fig|6666666.229900.peg.484 CDS AJME02000018.1 12559 12119 -1 - 441 hypothetical protein - none -
fig|6666666.229900.peg.485 CDS AJME02000018.1 13531 12587 -1 - 945 Homoserine kinase (EC 2.7.1.39) CBSS-269482.1.peg.1294;
Methionine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229900.peg.486 CDS AJME02000018.1 15991 13544 -1 - 2448 Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) CBSS-216591.1.peg.168;
Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch;
Methionine Biosynthesis;
Threonine and Homoserine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229900.peg.487 CDS AJME02000018.1 16211 16080 -2 - 132 hypothetical protein - none -
fig|6666666.229900.peg.488 CDS AJME02000018.1 16350 17738 3 + 1389 Nicotinamide phosphoribosyltransferase (EC 2.4.2.12) NAD and NADP cofactor biosynthesis global
fig|6666666.229900.peg.489 CDS AJME02000018.1 17731 18426 1 + 696 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC A Hypothetical Protein Related to Proline Metabolism;
CBSS-630.2.peg.3360
fig|6666666.229900.peg.490 CDS AJME02000018.1 19315 18479 -1 - 837 L-proline glycine betaine ABC transport system permease protein ProV (TC 3.A.1.12.1) Choline and Betaine Uptake and Betaine Biosynthesis
fig|6666666.229900.peg.491 CDS AJME02000018.1 21141 19630 -3 - 1512 L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1) / Osmotic adaptation Choline and Betaine Uptake and Betaine Biosynthesis
fig|6666666.229900.peg.492 CDS AJME02000018.1 22280 21276 -2 - 1005 Outer membrane protein NlpB, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and YfgL); Lipoprotein-34 precursor Lipopolysaccharide assembly
fig|6666666.229900.peg.493 CDS AJME02000018.1 23286 22393 -3 - 894 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229900.peg.494 CDS AJME02000018.1 23444 23908 2 + 465 Thiol peroxidase, Bcp-type (EC 1.11.1.15) CBSS-316057.3.peg.3521;
Thioredoxin-disulfide reductase
fig|6666666.229900.peg.495 CDS AJME02000018.1 26617 23972 -1 - 2646 TolA protein Ton and Tol transport systems
fig|6666666.229900.peg.496 CDS AJME02000018.1 26733 26846 3 + 114 hypothetical protein - none -
fig|6666666.229900.peg.497 CDS AJME02000018.1 28696 26843 -1 - 1854 GTP-binding protein TypA/BipA Universal GTPases
fig|6666666.229900.peg.498 CDS AJME02000018.1 29083 30492 1 + 1410 Glutamine synthetase type I (EC 6.3.1.2) Ammonia assimilation;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Glutamine synthetases;
Peptidoglycan Biosynthesis
fig|6666666.229900.peg.499 CDS AJME02000018.1 31326 30601 -3 - 726 Integral membrane protein TerC - none -
fig|6666666.229900.peg.500 CDS AJME02000018.1 32059 31391 -1 - 669 DNA mismatch repair endonuclease MutH DNA repair, bacterial
fig|6666666.229900.peg.501 CDS AJME02000018.1 32595 32056 -3 - 540 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) DNA repair, bacterial
fig|6666666.229900.peg.502 CDS AJME02000018.1 34102 32672 -1 - 1431 Long-chain fatty acid transport protein - none -
fig|6666666.229900.peg.503 CDS AJME02000018.1 34305 34595 3 + 291 FIG00696346: hypothetical protein - none -
fig|6666666.229900.peg.504 CDS AJME02000018.1 35934 34657 -3 - 1278 UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7) CBSS-12149.1.peg.3301;
Peptidoglycan Biosynthesis;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229900.peg.505 CDS AJME02000018.1 36208 35951 -1 - 258 YrbA protein Broadly distributed proteins not in subsystems;
CBSS-12149.1.peg.3301
fig|6666666.229900.peg.506 CDS AJME02000018.1 36477 36208 -3 - 270 Uncharacterized protein YrbB CBSS-12149.1.peg.3301
fig|6666666.229900.peg.507 CDS AJME02000018.1 37212 36571 -3 - 642 Uncharacterized ABC transporter, auxiliary component YrbC CBSS-12149.1.peg.3301;
Lipopolysaccharide assembly
fig|6666666.229900.peg.508 CDS AJME02000018.1 37750 37241 -1 - 510 Uncharacterized ABC transporter, periplasmic component YrbD CBSS-12149.1.peg.3301;
Lipopolysaccharide assembly
fig|6666666.229900.peg.509 CDS AJME02000018.1 38558 37773 -2 - 786 Uncharacterized ABC transporter, permease component YrbE CBSS-12149.1.peg.3301;
Lipopolysaccharide assembly
fig|6666666.229900.peg.510 CDS AJME02000018.1 39349 38552 -1 - 798 Uncharacterized ABC transporter, ATP-binding protein YrbF CBSS-12149.1.peg.3301;
Lipopolysaccharide assembly
fig|6666666.229900.peg.511 CDS AJME02000018.1 39519 39635 3 + 117 hypothetical protein - none -
fig|6666666.229900.peg.512 CDS AJME02000018.1 39632 40207 2 + 576 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters Lipopolysaccharide assembly
fig|6666666.229900.peg.513 CDS AJME02000018.1 40188 40706 3 + 519 LptA, protein essential for LPS transport across the periplasm KDO2-Lipid A biosynthesis;
Lipopolysaccharide assembly
fig|6666666.229900.peg.514 CDS AJME02000018.1 40712 41437 2 + 726 Lipopolysaccharide ABC transporter, ATP-binding protein LptB KDO2-Lipid A biosynthesis;
Lipopolysaccharide assembly
fig|6666666.229900.peg.515 CDS AJME02000018.1 41441 41974 2 + 534 PTS IIA-like nitrogen-regulatory protein PtsN - none -
fig|6666666.229900.peg.516 CDS AJME02000018.1 42002 42856 2 + 855 FIG000506: Predicted P-loop-containing kinase - none -
fig|6666666.229900.peg.517 CDS AJME02000018.1 44196 42862 -3 - 1335 Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) DNA repair, bacterial;
Purine salvage cluster
fig|6666666.229900.peg.518 CDS AJME02000018.1 45396 44203 -3 - 1194 FIG074102: hypothetical protein - none -
fig|6666666.229900.peg.519 CDS AJME02000018.1 45722 45429 -2 - 294 UPF0125 protein yfjF - none -
fig|6666666.229900.peg.520 CDS AJME02000018.1 46143 45715 -3 - 429 Putative oligoketide cyclase/lipid transport protein, similarity with yeast ubiquinone-binding protein YOL008W - none -
fig|6666666.229900.peg.521 CDS AJME02000018.1 46216 46632 1 + 417 conserved hypothetical protein; possible membrane protein - none -
fig|6666666.229900.peg.522 CDS AJME02000018.1 47983 47171 -1 - 813 Outer membrane lipoprotein e (P4) / NMN 5@1-nucleotidase, extracellular (EC 3.1.3.5) NAD and NADP cofactor biosynthesis global
fig|6666666.229900.peg.523 CDS AJME02000018.1 49130 48111 -2 - 1020 Zinc ABC transporter, periplasmic-binding protein ZnuA - none -
fig|6666666.229900.peg.524 CDS AJME02000018.1 50000 49230 -2 - 771 CsdL (EC-YgdL) protein of the HesA/MoeB/ThiF family, part of the CsdA-E-L sulfur transfer pathway - none -
fig|6666666.229900.peg.525 CDS AJME02000018.1 51298 50000 -1 - 1299 Membrane-bound lytic murein transglycosylase A precursor (EC 3.2.1.-) Murein Hydrolases
fig|6666666.229900.peg.526 CDS AJME02000018.1 52869 51496 -3 - 1374 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (EC 6.3.2.-) Peptidoglycan biosynthesis--gjo;
Recycling of Peptidoglycan Amino Acids
fig|6666666.229900.peg.527 CDS AJME02000018.1 53027 54034 2 + 1008 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) Cluster Ytf and putative sugar transporter;
Glycolysis and Gluconeogenesis;
Putative sugar ABC transporter (ytf cluster)
fig|6666666.229900.peg.528 CDS AJME02000018.1 55103 54297 -2 - 807 Permeases of the drug/metabolite transporter (DMT) superfamily - none -
fig|6666666.229900.peg.529 CDS AJME02000018.1 55118 55234 2 + 117 hypothetical protein - none -
fig|6666666.229900.peg.530 CDS AJME02000018.1 55315 55974 1 + 660 putative membrane protein - none -
fig|6666666.229900.peg.531 CDS AJME02000018.1 56104 56676 1 + 573 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) Proline Synthesis
fig|6666666.229900.peg.532 CDS AJME02000018.1 60035 57915 -2 - 2121 unknown - none -
fig|6666666.229900.peg.533 CDS AJME02000018.1 61360 60314 -1 - 1047 Fe(3+) ions import ATP-binding protein fbpC (EC 3.6.3.30) - none -
fig|6666666.229900.peg.534 CDS AJME02000018.1 63433 61376 -1 - 2058 Ferric iron ABC transporter, permease protein Iron acquisition in Streptococcus
fig|6666666.229900.peg.535 CDS AJME02000018.1 64504 63461 -1 - 1044 Ferric iron ABC transporter, iron-binding protein Iron acquisition in Streptococcus
fig|6666666.229900.peg.536 CDS AJME02000018.1 65706 64666 -3 - 1041 Ferric iron ABC transporter, iron-binding protein Iron acquisition in Streptococcus
fig|6666666.229900.peg.537 CDS AJME02000018.1 66015 66665 3 + 651 Uridine kinase (EC 2.7.1.48) [C1] pyrimidine conversions
fig|6666666.229900.peg.538 CDS AJME02000018.1 66675 67259 3 + 585 Deoxycytidine triphosphate deaminase (EC 3.5.4.13) pyrimidine conversions
fig|6666666.229900.peg.539 CDS AJME02000018.1 67260 68462 3 + 1203 FIG00696476: hypothetical protein - none -
fig|6666666.229900.peg.540 CDS AJME02000018.1 68464 69660 1 + 1197 Sugar efflux transporter SotB - none -
fig|6666666.229900.peg.541 CDS AJME02000018.1 71262 69730 -3 - 1533 GTP-binding protein EngA CBSS-290633.1.peg.1906;
CBSS-498211.3.peg.1415;
Universal GTPases
fig|6666666.229900.peg.542 CDS AJME02000018.1 71550 72533 3 + 984 DnaJ-class molecular chaperone CbpA Protein chaperones
fig|6666666.229900.peg.543 CDS AJME02000018.1 72556 72846 1 + 291 hypothetical protein - none -
fig|6666666.229900.peg.544 CDS AJME02000018.1 74209 72911 -1 - 1299 Adenylosuccinate synthetase (EC 6.3.4.4) Purine conversions
fig|6666666.229900.peg.545 CDS AJME02000018.1 75262 74297 -1 - 966 tRNA (5-methoxyuridine) 34 synthase tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229900.peg.546 CDS AJME02000018.1 76796 75276 -2 - 1521 Proline/sodium symporter PutP (TC 2.A.21.2.1) @ Propionate/sodium symporter - none -
fig|6666666.229900.peg.547 CDS AJME02000018.1 76936 78411 1 + 1476 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) Bacterial Cell Division;
CBSS-354.1.peg.2917;
RNA processing and degradation, bacterial
fig|6666666.229900.peg.548 CDS AJME02000018.1 78528 79175 3 + 648 Glutaredoxin 2 Glutaredoxins;
Glutathione: Redox cycle
fig|6666666.229900.peg.549 CDS AJME02000018.1 79191 79886 3 + 696 NAD-dependent protein deacetylase of SIR2 family Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229900.peg.550 CDS AJME02000019.1 1773 307 -3 - 1467 PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69) Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism;
Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229900.peg.551 CDS AJME02000019.1 3152 2022 -2 - 1131 Sialic acid-induced transmembrane protein YjhT(NanM), possible mutarotase Sialic Acid Metabolism
fig|6666666.229900.peg.552 CDS AJME02000019.1 5140 3290 -1 - 1851 TRAP-type transport system, large permease component, predicted N-acetylneuraminate transporter / TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229900.peg.553 CDS AJME02000019.1 6190 5204 -1 - 987 TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein Sialic Acid Metabolism
fig|6666666.229900.peg.554 CDS AJME02000019.1 6432 7133 3 + 702 N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9) Sialic Acid Metabolism
fig|6666666.229900.peg.555 CDS AJME02000019.1 7147 8034 1 + 888 N-acetylmannosamine kinase (EC 2.7.1.60) Sialic Acid Metabolism
fig|6666666.229900.peg.556 CDS AJME02000019.1 8044 8913 1 + 870 Sialic acid utilization regulator, RpiR family Sialic Acid Metabolism
fig|6666666.229900.peg.557 CDS AJME02000019.1 8923 9801 1 + 879 N-acetylneuraminate lyase (EC 4.1.3.3) Sialic Acid Metabolism
fig|6666666.229900.peg.558 CDS AJME02000019.1 9956 10759 2 + 804 Glucosamine-6-phosphate deaminase (EC 3.5.99.6) Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism
fig|6666666.229900.peg.559 CDS AJME02000019.1 10839 11960 3 + 1122 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism
fig|6666666.229900.peg.560 CDS AJME02000019.1 12060 12173 3 + 114 hypothetical protein - none -
fig|6666666.229900.peg.561 CDS AJME02000019.1 12665 12165 -2 - 501 Thiol peroxidase, Tpx-type (EC 1.11.1.15) CBSS-257314.1.peg.752;
Thioredoxin-disulfide reductase
fig|6666666.229900.peg.562 CDS AJME02000019.1 13770 12706 -3 - 1065 Ferrochelatase, protoheme ferro-lyase (EC 4.99.1.1) Heme and Siroheme Biosynthesis
fig|6666666.229900.peg.563 CDS AJME02000019.1 14185 13763 -1 - 423 FIG017415: ydiI hotdog fold superfamily - none -
fig|6666666.229900.peg.564 CDS AJME02000019.1 14965 14321 -1 - 645 Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD Glycolate, glyoxylate interconversions
fig|6666666.229900.peg.565 CDS AJME02000019.1 17248 14996 -1 - 2253 Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD Glycolate, glyoxylate interconversions
fig|6666666.229900.peg.566 CDS AJME02000019.1 17733 18773 3 + 1041 Outer membrane protein A precursor Osmoregulation
fig|6666666.229900.peg.567 CDS AJME02000019.1 19091 19420 2 + 330 Glutaredoxin-related protein Glutaredoxins
fig|6666666.229900.peg.568 CDS AJME02000019.1 19543 19430 -1 - 114 hypothetical protein - none -
fig|6666666.229900.peg.569 CDS AJME02000019.1 19545 19997 3 + 453 putative membrane protein - none -
fig|6666666.229900.peg.570 CDS AJME02000019.1 19998 20387 3 + 390 COG2363 - none -
fig|6666666.229900.peg.571 CDS AJME02000019.1 20384 24433 2 + 4050 HrpA-like helicases - none -
fig|6666666.229900.peg.572 CDS AJME02000019.1 25554 24520 -3 - 1035 ATPase domain protein - none -
fig|6666666.229900.peg.573 CDS AJME02000019.1 25706 25906 2 + 201 hypothetical protein - none -
fig|6666666.229900.peg.574 CDS AJME02000019.1 26549 25884 -2 - 666 Phosphoglycolate phosphatase (EC 3.1.3.18) 2-phosphoglycolate salvage;
Glycolate, glyoxylate interconversions
fig|6666666.229900.peg.575 CDS AJME02000019.1 27061 26750 -1 - 312 Cytochrome C553 (soluble cytochrome f) Iron transport system including ABC transporter;
Soluble cytochromes and functionally related electron carriers
fig|6666666.229900.peg.576 CDS AJME02000019.1 27559 27068 -1 - 492 Possible periplasmic thiredoxin Iron transport system including ABC transporter
fig|6666666.229900.peg.577 CDS AJME02000019.1 28220 27549 -2 - 672 Fe2+ ABC transporter, ATP-binding subunit Iron transport system including ABC transporter
fig|6666666.229900.peg.578 CDS AJME02000019.1 29361 28222 -3 - 1140 Fe2+ ABC transporter, permease protein 2 Iron transport system including ABC transporter
fig|6666666.229900.peg.579 CDS AJME02000019.1 30673 29348 -1 - 1326 Cell division protein FtsX Bacterial Cell Division
fig|6666666.229900.peg.580 CDS AJME02000019.1 32106 30676 -3 - 1431 Fe2+ ABC transporter, substrate binding protein Iron transport system including ABC transporter
fig|6666666.229900.peg.581 CDS AJME02000019.1 32765 32244 -2 - 522 Periplasmic protein p19 involved in high-affinity Fe2+ transport Iron transport system including ABC transporter
fig|6666666.229900.peg.582 CDS AJME02000019.1 34715 32808 -2 - 1908 High-affinity Fe2+/Pb2+ permease precursor Iron transport system including ABC transporter
fig|6666666.229900.peg.583 CDS AJME02000019.1 37407 35014 -3 - 2394 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) DNA uptake cluster;
Peptidoglycan Biosynthesis;
Type IV pilus
fig|6666666.229900.peg.584 CDS AJME02000019.1 37668 37453 -3 - 216 hypothetical protein - none -
fig|6666666.229900.peg.585 CDS AJME02000019.1 38011 37670 -1 - 342 probable iron binding protein from the HesB_IscA_SufA family - none -
fig|6666666.229900.peg.586 CDS AJME02000019.1 38145 38945 3 + 801 Methionine aminopeptidase (EC 3.4.11.18) CBSS-312309.3.peg.1965;
Translation termination factors bacterial
fig|6666666.229900.peg.587 CDS AJME02000019.1 39017 41608 2 + 2592 [Protein-PII] uridylyltransferase (EC 2.7.7.59) Ammonia assimilation;
CBSS-312309.3.peg.1965
fig|6666666.229900.peg.588 CDS AJME02000019.1 42967 41684 -1 - 1284 Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8) CBSS-196164.1.peg.461;
Heme and Siroheme Biosynthesis
fig|6666666.229900.peg.589 CDS AJME02000019.1 43095 44168 3 + 1074 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) Teichoic and lipoteichoic acids biosynthesis
fig|6666666.229900.peg.590 CDS AJME02000022.1 319 1707 1 + 1389 hypothetical protein - none -
fig|6666666.229900.peg.591 CDS AJME02000022.1 1697 4789 2 + 3093 hypothetical protein - none -
fig|6666666.229900.peg.592 CDS AJME02000022.1 4797 5075 3 + 279 hypothetical protein - none -
fig|6666666.229900.peg.593 CDS AJME02000022.1 5347 5742 1 + 396 hypothetical protein - none -
fig|6666666.229900.peg.594 CDS AJME02000022.1 6203 6358 2 + 156 hypothetical protein - none -
fig|6666666.229900.peg.595 CDS AJME02000022.1 6351 8615 3 + 2265 NADP-dependent malic enzyme (EC 1.1.1.40) Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229900.peg.596 CDS AJME02000022.1 8759 9403 2 + 645 Manganese superoxide dismutase (EC 1.15.1.1) Oxidative stress;
Protection from Reactive Oxygen Species
fig|6666666.229900.peg.597 CDS AJME02000022.1 9814 10605 1 + 792 putative lipoprotein - none -
fig|6666666.229900.peg.598 CDS AJME02000022.1 11635 10808 -1 - 828 YpfJ protein, zinc metalloprotease superfamily Broadly distributed proteins not in subsystems
fig|6666666.229900.peg.599 CDS AJME02000022.1 11730 12173 3 + 444 FIG00904084: hypothetical protein - none -
fig|6666666.229900.peg.600 CDS AJME02000022.1 12859 12263 -1 - 597 Acyl-phosphate:glycerol-3-phosphate O-acyltransferase PlsY Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229900.peg.601 CDS AJME02000022.1 12956 13309 2 + 354 Dihydroneopterin aldolase (EC 4.1.2.25) Folate Biosynthesis;
Folate biosynthesis cluster
fig|6666666.229900.peg.602 CDS AJME02000022.1 13330 14760 1 + 1431 Transglycosylase, Slt family - none -
fig|6666666.229900.peg.603 CDS AJME02000022.1 14771 14917 2 + 147 hypothetical protein - none -
fig|6666666.229900.peg.604 CDS AJME02000022.1 15499 14960 -1 - 540 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation Biogenesis of c-type cytochromes;
Periplasmic disulfide interchange
fig|6666666.229900.peg.605 CDS AJME02000022.1 17067 15523 -3 - 1545 Na+/H+ antiporter NhaB - none -
fig|6666666.229900.peg.606 CDS AJME02000022.1 17262 17993 3 + 732 Transcriptional regulator for fatty acid degradation FadR, GntR family - none -
fig|6666666.229900.peg.607 CDS AJME02000022.1 19328 18114 -2 - 1215 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229900.peg.608 CDS AJME02000022.1 19445 20749 2 + 1305 Menaquinone-specific isochorismate synthase (EC 5.4.4.2) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229900.peg.609 CDS AJME02000022.1 20740 22446 1 + 1707 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase (EC 2.2.1.9) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229900.peg.610 CDS AJME02000022.1 22499 23248 2 + 750 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase (EC 4.2.99.20) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229900.peg.611 CDS AJME02000022.1 23344 23613 1 + 270 SSU ribosomal protein S15p (S13e) Ribosome SSU bacterial
fig|6666666.229900.peg.612 CDS AJME02000022.1 23821 24975 1 + 1155 S-adenosylmethionine synthetase (EC 2.5.1.6) Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229900.peg.613 CDS AJME02000023.1 55 402 1 + 348 Formate hydrogenlyase transcriptional activator Formate hydrogenase
fig|6666666.229900.peg.614 CDS AJME02000023.1 434 853 2 + 420 Coenzyme F420 hydrogenase maturation protease (EC 3.4.24.-) Hydrogenases
fig|6666666.229900.peg.615 CDS AJME02000023.1 981 2153 3 + 1173 cell filamentation protein Fic-related protein - none -
fig|6666666.229900.peg.616 CDS AJME02000023.1 2286 4508 3 + 2223 Formate dehydrogenase H (EC 1.2.1.2) @ selenocysteine-containing Formate dehydrogenase
fig|6666666.229900.peg.619 CDS AJME02000025.1 355 221 -1 - 135 hypothetical protein - none -
fig|6666666.229900.peg.620 CDS AJME02000025.1 1490 360 -2 - 1131 hypothetical protein - none -
fig|6666666.229900.peg.621 CDS AJME02000025.1 4944 3715 -3 - 1230 hypothetical protein - none -
fig|6666666.229900.peg.622 CDS AJME02000025.1 5249 5085 -2 - 165 hypothetical protein - none -
fig|6666666.229900.peg.623 CDS AJME02000025.1 5922 5416 -3 - 507 S-ribosylhomocysteine lyase (EC 4.4.1.21) / Autoinducer-2 production protein LuxS Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon);
Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229900.peg.624 CDS AJME02000025.1 6620 6135 -2 - 486 Putative membrane protein - none -
fig|6666666.229900.peg.625 CDS AJME02000025.1 7228 6623 -1 - 606 Galactoside O-acetyltransferase (EC 2.3.1.18) Lactose utilization
fig|6666666.229900.peg.626 CDS AJME02000025.1 7830 7228 -3 - 603 Putative phosphatase YqaB 2-phosphoglycolate salvage
fig|6666666.229900.peg.627 CDS AJME02000025.1 7958 8338 2 + 381 FIG00782409: hypothetical protein - none -
fig|6666666.229900.peg.628 CDS AJME02000025.1 10869 8854 -3 - 2016 ATP-dependent DNA helicase Rep DNA repair, bacterial UvrD and related helicases
fig|6666666.229900.peg.629 CDS AJME02000025.1 11109 10879 -3 - 231 FIG00696102: hypothetical protein - none -
fig|6666666.229900.peg.630 CDS AJME02000025.1 11776 11213 -1 - 564 Outer membrane protein 18/16 - none -
fig|6666666.229900.peg.631 CDS AJME02000025.1 11993 14794 2 + 2802 DNA polymerase I (EC 2.7.7.7) DNA Repair Base Excision
fig|6666666.229900.peg.632 CDS AJME02000025.1 16017 17723 3 + 1707 Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-) Anaerobic respiratory reductases
fig|6666666.229900.peg.633 CDS AJME02000025.1 17734 18351 1 + 618 Anaerobic dimethyl sulfoxide reductase chain B (EC 1.8.99.-) Anaerobic respiratory reductases
fig|6666666.229900.peg.634 CDS AJME02000025.1 18353 19192 2 + 840 Anaerobic dimethyl sulfoxide reductase chain C (EC 1.8.5.3) - none -
fig|6666666.229900.peg.635 CDS AJME02000025.1 19226 19840 2 + 615 Putative oxidoreductase component of anaerobic dehydrogenases; Functional role page for Chaperone protein TorD - none -
fig|6666666.229900.peg.636 CDS AJME02000025.1 19854 20063 3 + 210 Ferredoxin-type protein NapF (periplasmic nitrate reductase) - none -
fig|6666666.229900.peg.637 CDS AJME02000025.1 20208 21113 3 + 906 Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14) Glycyl-tRNA synthetase;
Glycyl-tRNA synthetase containing cluster;
tRNA aminoacylation, Gly
fig|6666666.229900.peg.638 CDS AJME02000025.1 21163 21423 1 + 261 Glutaredoxin-related protein Glutaredoxins
fig|6666666.229900.peg.639 CDS AJME02000025.1 21463 21771 1 + 309 FIG074102: hypothetical protein - none -
fig|6666666.229900.peg.640 CDS AJME02000025.1 21893 22231 2 + 339 FIG074102: hypothetical protein - none -
fig|6666666.229900.peg.641 CDS AJME02000025.1 22368 22502 3 + 135 hypothetical protein - none -
fig|6666666.229900.peg.642 CDS AJME02000025.1 22550 24418 2 + 1869 ATPase family protein - none -
fig|6666666.229900.peg.643 CDS AJME02000025.1 24411 26522 3 + 2112 Glycyl-tRNA synthetase beta chain (EC 6.1.1.14) Glycyl-tRNA synthetase;
Glycyl-tRNA synthetase containing cluster;
tRNA aminoacylation, Gly
fig|6666666.229900.peg.644 CDS AJME02000025.1 28225 26591 -1 - 1635 CTP synthase (EC 6.3.4.2) CTP synthase (EC 6.3.4.2) cluster;
pyrimidine conversions
fig|6666666.229900.peg.645 CDS AJME02000025.1 28460 29761 2 + 1302 Branched-chain amino acid transport system carrier protein - none -
fig|6666666.229900.peg.646 CDS AJME02000025.1 29940 30071 3 + 132 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) / Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) Riboflavin synthesis cluster
fig|6666666.229900.peg.647 CDS AJME02000025.1 30842 30258 -2 - 585 NfuA Fe-S protein maturation Biotin biosynthesis Experimental;
DNA uptake cluster
fig|6666666.229900.peg.648 CDS AJME02000025.1 31640 30954 -2 - 687 Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy Biotin biosynthesis Experimental;
Biotin synthesis cluster;
CBSS-216591.1.peg.168
fig|6666666.229900.peg.649 CDS AJME02000025.1 31786 32598 1 + 813 HMP-PP hydrolase (pyridoxal phosphatase) Cof, detected in genetic screen for thiamin metabolic genes (PMID:15292217) - none -
fig|6666666.229900.peg.650 CDS AJME02000025.1 32782 33894 1 + 1113 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch;
Threonine and Homoserine Biosynthesis
fig|6666666.229900.peg.651 CDS AJME02000025.1 34549 33968 -1 - 582 Late competence protein ComEA, DNA receptor - none -
fig|6666666.229900.peg.652 CDS AJME02000025.1 34814 37384 2 + 2571 ClpB protein Protein chaperones;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229900.peg.653 CDS AJME02000025.1 37985 37485 -2 - 501 hypothetical protein - none -
fig|6666666.229900.peg.654 CDS AJME02000025.1 38168 39196 2 + 1029 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) - none -
fig|6666666.229900.peg.655 CDS AJME02000025.1 39196 39375 1 + 180 hypothetical protein - none -
fig|6666666.229900.peg.656 CDS AJME02000025.1 39454 40278 1 + 825 Diaminopimelate epimerase (EC 5.1.1.7) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229900.peg.657 CDS AJME02000025.1 40288 41178 1 + 891 Tyrosine recombinase XerC - none -
fig|6666666.229900.peg.658 CDS AJME02000025.1 41193 41906 3 + 714 Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5@1-phosphoribitylamino)uracil phosphatase Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants
fig|6666666.229900.peg.659 CDS AJME02000025.1 42433 42008 -1 - 426 Excinuclease ATPase subunit - none -
fig|6666666.229900.peg.660 CDS AJME02000025.1 42814 43557 1 + 744 3-oxoacyl-[ACP] synthase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229900.peg.661 CDS AJME02000025.1 43542 44330 3 + 789 FIG018329: 1-acyl-sn-glycerol-3-phosphate acyltransferase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229900.peg.662 CDS AJME02000025.1 44308 44571 1 + 264 Acyl carrier protein (ACP1) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229900.peg.663 CDS AJME02000025.1 44574 44825 3 + 252 Acyl carrier protein (ACP2) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229900.peg.664 CDS AJME02000025.1 44825 46492 2 + 1668 FIGfam138462: Acyl-CoA synthetase, AMP-(fatty) acid ligase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229900.peg.665 CDS AJME02000025.1 46518 47063 3 + 546 FIG017861: hypothetical protein Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229900.peg.666 CDS AJME02000025.1 47060 48421 2 + 1362 FIGfam138462: Acyl-CoA synthetase, AMP-(fatty) acid ligase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229900.peg.667 CDS AJME02000025.1 48421 49143 1 + 723 FIG143263: Glycosyl transferase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229900.peg.668 CDS AJME02000025.1 49140 50066 3 + 927 Lysophospholipid acyltransferase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229900.peg.669 CDS AJME02000025.1 50063 50509 2 + 447 FIG002571: 4-hydroxybenzoyl-CoA thioesterase domain protein Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229900.peg.670 CDS AJME02000025.1 50506 51090 1 + 585 FIG027190: Putative transmembrane protein Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229900.peg.671 CDS AJME02000025.1 51097 53370 1 + 2274 FIG021862: membrane protein, exporter Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229900.peg.672 CDS AJME02000025.1 53500 53979 1 + 480 FIG085779: Lipoprotein Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229900.peg.673 CDS AJME02000025.1 53988 55211 3 + 1224 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) FabV like Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229900.peg.674 CDS AJME02000025.1 55204 55647 1 + 444 3-hydroxydecanoyl-[ACP] dehydratase (EC 4.2.1.60) Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229900.peg.675 CDS AJME02000025.1 55697 56425 2 + 729 3-oxoacyl-[ACP] reductase (EC 1.1.1.100) Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229900.peg.676 CDS AJME02000025.1 56456 57700 2 + 1245 FIG138576: 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229900.peg.677 CDS AJME02000027.1 235 1839 1 + 1605 hypothetical protein - none -
fig|6666666.229900.peg.678 CDS AJME02000027.1 1859 3049 2 + 1191 hypothetical protein - none -
fig|6666666.229900.peg.679 CDS AJME02000027.1 3425 3904 2 + 480 hypothetical protein - none -
fig|6666666.229900.peg.680 CDS AJME02000027.1 5138 4422 -2 - 717 COG1720: Uncharacterized conserved protein tRNA modification Bacteria
fig|6666666.229900.peg.681 CDS AJME02000027.1 5268 6212 3 + 945 1,4-dihydroxy-2-naphthoate polyprenyltransferase (EC 2.5.1.74) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229900.peg.682 CDS AJME02000027.1 6263 6763 2 + 501 Ribonuclease E inhibitor RraA RNA processing and degradation, bacterial
fig|6666666.229900.peg.683 CDS AJME02000027.1 6784 6948 1 + 165 hypothetical protein - none -
fig|6666666.229900.peg.684 CDS AJME02000027.1 6953 8344 2 + 1392 Arsenic efflux pump protein Arsenic resistance
fig|6666666.229900.peg.685 CDS AJME02000027.1 8935 8402 -1 - 534 FIG138315: Putative alpha helix protein Putative TldE-TldD proteolytic complex
fig|6666666.229900.peg.686 CDS AJME02000027.1 9052 10413 1 + 1362 TldE protein, part of TldE/TldD proteolytic complex Putative TldE-TldD proteolytic complex
fig|6666666.229900.peg.687 CDS AJME02000027.1 10652 11191 2 + 540 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) Cell division-ribosomal stress proteins cluster;
Folate biosynthesis cluster;
Purine conversions
fig|6666666.229900.peg.688 CDS AJME02000027.1 12401 11262 -2 - 1140 Glycerate kinase (EC 2.7.1.31) D-galactarate, D-glucarate and D-glycerate catabolism;
D-galactarate, D-glucarate and D-glycerate catabolism - gjo;
Glycerate metabolism;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Glycine and Serine Utilization;
Serine-glyoxylate cycle
fig|6666666.229900.peg.689 CDS AJME02000027.1 13672 12398 -1 - 1275 D-glycerate transporter (predicted) D-galactarate, D-glucarate and D-glycerate catabolism;
D-galactarate, D-glucarate and D-glycerate catabolism - gjo;
Glycerate metabolism
fig|6666666.229900.peg.690 CDS AJME02000027.1 14586 13804 -3 - 783 Sugar diacid utilization regulator SdaR D-galactarate, D-glucarate and D-glycerate catabolism;
D-galactarate, D-glucarate and D-glycerate catabolism - gjo
fig|6666666.229900.peg.691 CDS AJME02000027.1 14918 14592 -2 - 327 Sugar diacid utilization regulator SdaR D-galactarate, D-glucarate and D-glycerate catabolism;
D-galactarate, D-glucarate and D-glycerate catabolism - gjo
fig|6666666.229900.peg.692 CDS AJME02000027.1 15211 15822 1 + 612 UDP-glucose dehydrogenase (EC 1.1.1.22) - none -
fig|6666666.229900.peg.693 CDS AJME02000027.1 17694 15907 -3 - 1788 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) - none -
fig|6666666.229900.peg.694 CDS AJME02000027.1 18723 17821 -3 - 903 Lipoprotein nlpI precursor - none -
fig|6666666.229900.peg.695 CDS AJME02000027.1 21039 18808 -3 - 2232 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) Bacterial RNA-metabolizing Zn-dependent hydrolases;
Polyadenylation bacterial
fig|6666666.229900.peg.696 CDS AJME02000027.1 21231 21701 3 + 471 Putative sugar isomerase involved in processing of exogenous sialic acid Sialic Acid Metabolism
fig|6666666.229900.peg.697 CDS AJME02000027.1 21815 21690 -2 - 126 hypothetical protein - none -
fig|6666666.229900.peg.698 CDS AJME02000027.1 22729 22175 -1 - 555 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD Recycling of Peptidoglycan Amino Acids
fig|6666666.229900.peg.699 CDS AJME02000027.1 22817 22704 -2 - 114 hypothetical protein - none -
fig|6666666.229900.peg.700 CDS AJME02000027.1 22852 23304 1 + 453 Type IV pilin PilA Type IV pilus
fig|6666666.229900.peg.701 CDS AJME02000027.1 23331 24740 3 + 1410 Type IV fimbrial assembly, ATPase PilB Type IV pilus
fig|6666666.229900.peg.702 CDS AJME02000027.1 24733 25956 1 + 1224 Type II secretory pathway, component PulF / Type IV fimbrial assembly protein PilC Type IV pilus
fig|6666666.229900.peg.703 CDS AJME02000027.1 25956 26642 3 + 687 Leader peptidase (Prepilin peptidase) (EC 3.4.23.43) / N-methyltransferase (EC 2.1.1.-) Type IV pilus;
Type IV pilus
fig|6666666.229900.peg.704 CDS AJME02000028.1 14 148 2 + 135 Dihydropteroate synthase (EC 2.5.1.15) Folate Biosynthesis;
Folate biosynthesis cluster
fig|6666666.229900.peg.705 CDS AJME02000028.1 176 1513 2 + 1338 Phosphoglucosamine mutase (EC 5.4.2.10) Sialic Acid Metabolism;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229900.peg.706 CDS AJME02000028.1 1526 1993 2 + 468 Phosphohistidine phosphatase SixA - none -
fig|6666666.229900.peg.707 CDS AJME02000028.1 2217 2762 3 + 546 FIG00696317: hypothetical protein - none -
fig|6666666.229900.peg.708 CDS AJME02000028.1 3446 2784 -2 - 663 Septum site-determining protein MinC Bacterial Cell Division;
Bacterial Cytoskeleton;
Septum site-determining cluster Min
fig|6666666.229900.peg.709 CDS AJME02000028.1 3530 3781 2 + 252 Protein YcgL CBSS-243277.1.peg.4359
fig|6666666.229900.peg.710 CDS AJME02000028.1 4687 4178 -1 - 510 probable lipoprotein NlpC - none -
fig|6666666.229900.peg.711 CDS AJME02000028.1 5721 4867 -3 - 855 2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase (EC 2.5.1.55) A Gammaproteobacteria Cluster Relating to Translation;
KDO2-Lipid A biosynthesis
fig|6666666.229900.peg.712 CDS AJME02000028.1 6630 5731 -3 - 900 Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2 A Gammaproteobacteria Cluster Relating to Translation;
CBSS-216600.3.peg.802;
Translation termination factors bacterial;
YrdC-YciO-Sua5 protein family
fig|6666666.229900.peg.713 CDS AJME02000028.1 7755 6670 -3 - 1086 Peptide chain release factor 1 A Gammaproteobacteria Cluster Relating to Translation;
CBSS-216600.3.peg.802;
Translation termination factors bacterial;
YrdC-YciO-Sua5 protein family
fig|6666666.229900.peg.714 CDS AJME02000028.1 8351 7896 -2 - 456 Outer membrane lipoprotein - none -
fig|6666666.229900.peg.715 CDS AJME02000028.1 8980 8393 -1 - 588 Protein yecM - none -
fig|6666666.229900.peg.716 CDS AJME02000028.1 9077 10810 2 + 1734 Arginyl-tRNA synthetase (EC 6.1.1.19) tRNA aminoacylation, Arg
fig|6666666.229900.peg.717 CDS AJME02000028.1 11399 11286 -2 - 114 hypothetical protein - none -
fig|6666666.229900.peg.718 CDS AJME02000028.1 12387 11407 -3 - 981 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch;
Threonine and Homoserine Biosynthesis
fig|6666666.229900.peg.719 CDS AJME02000028.1 12448 12927 1 + 480 Cys-tRNA(Pro) deacylase YbaK tRNA aminoacylation, Pro
fig|6666666.229900.peg.720 CDS AJME02000029.1 1594 50 -1 - 1545 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE Copper homeostasis: copper tolerance;
Lipoprotein Biosynthesis;
tRNA-methylthiotransferase containing cluster;
tRNA-methylthiotransferase containing cluster
fig|6666666.229900.peg.721 CDS AJME02000029.1 2956 2060 -1 - 897 Magnesium and cobalt efflux protein CorC CBSS-56780.10.peg.1536;
Copper homeostasis: copper tolerance;
Glycyl-tRNA synthetase containing cluster;
Magnesium transport;
tRNA-methylthiotransferase containing cluster
fig|6666666.229900.peg.722 CDS AJME02000029.1 3122 2925 -2 - 198 hypothetical protein - none -
fig|6666666.229900.peg.723 CDS AJME02000029.1 3203 4210 2 + 1008 [Citrate [pro-3S]-lyase] ligase (EC 6.2.1.22) Citrate Metabolism, Transport, and Regulation
fig|6666666.229900.peg.724 CDS AJME02000029.1 4249 4536 1 + 288 Citrate lyase gamma chain, acyl carrier protein (EC 4.1.3.6) Citrate Metabolism, Transport, and Regulation;
TCA Cycle
fig|6666666.229900.peg.725 CDS AJME02000029.1 4533 5408 3 + 876 Citrate lyase beta chain (EC 4.1.3.6) Citrate Metabolism, Transport, and Regulation
fig|6666666.229900.peg.726 CDS AJME02000029.1 5423 6925 2 + 1503 Citrate lyase alpha chain (EC 4.1.3.6) Citrate Metabolism, Transport, and Regulation
fig|6666666.229900.peg.727 CDS AJME02000029.1 7118 8530 2 + 1413 2-(5@1@1-triphosphoribosyl)-3@1-dephosphocoenzyme-A synthase (EC 2.7.8.25) Citrate Metabolism, Transport, and Regulation
fig|6666666.229900.peg.728 CDS AJME02000029.1 8517 9950 3 + 1434 2-oxoglutarate/malate translocator - none -
fig|6666666.229900.peg.729 CDS AJME02000029.1 10229 11728 2 + 1500 Putative ATP /GTP binding protein - none -
fig|6666666.229900.peg.730 CDS AJME02000029.1 13024 11993 -1 - 1032 Aldose 1-epimerase (EC 5.1.3.3) Lactose and Galactose Uptake and Utilization;
Maltose and Maltodextrin Utilization
fig|6666666.229900.peg.731 CDS AJME02000029.1 14172 13018 -3 - 1155 Galactokinase (EC 2.7.1.6) Lactose and Galactose Uptake and Utilization
fig|6666666.229900.peg.732 CDS AJME02000029.1 15283 14240 -1 - 1044 Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10) Lactose and Galactose Uptake and Utilization
fig|6666666.229900.peg.733 CDS AJME02000029.1 15525 16538 3 + 1014 Galactose operon repressor, GalR-LacI family of transcriptional regulators Lactose and Galactose Uptake and Utilization
fig|6666666.229900.peg.734 CDS AJME02000029.1 16753 17745 1 + 993 Galactose/methyl galactoside ABC transport system, D-galactose-binding periplasmic protein MglB (TC 3.A.1.2.3) Bacterial Chemotaxis;
Lactose and Galactose Uptake and Utilization
fig|6666666.229900.peg.735 CDS AJME02000029.1 17820 19358 3 + 1539 Galactose/methyl galactoside ABC transport system, ATP-binding protein MglA (EC 3.6.3.17) Lactose and Galactose Uptake and Utilization
fig|6666666.229900.peg.736 CDS AJME02000029.1 19377 20387 3 + 1011 Galactose/methyl galactoside ABC transport system, permease protein MglC (TC 3.A.1.2.3) Lactose and Galactose Uptake and Utilization
fig|6666666.229900.peg.737 CDS AJME02000029.1 22309 20462 -1 - 1848 Aerobic respiration control sensor protein arcB (EC 2.7.3.-) - none -
fig|6666666.229900.peg.738 CDS AJME02000029.1 22335 22469 3 + 135 hypothetical protein - none -
fig|6666666.229900.peg.739 CDS AJME02000029.1 23670 22450 -3 - 1221 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41) Fatty Acid Biosynthesis FASII
fig|6666666.229900.peg.740 CDS AJME02000029.1 23840 25858 2 + 2019 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) CBSS-354.1.peg.876;
RNA methylation;
Riboflavin, FMN and FAD metabolism in plants;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229900.peg.741 CDS AJME02000029.1 26048 27103 2 + 1056 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229900.peg.742 CDS AJME02000030.1 270 419 3 + 150 hypothetical protein - none -
fig|6666666.229900.peg.743 CDS AJME02000030.1 829 954 1 + 126 hypothetical protein - none -
fig|6666666.229900.peg.744 CDS AJME02000030.1 1910 1110 -2 - 801 Inositol-1-monophosphatase (EC 3.1.3.25) - none -
fig|6666666.229900.peg.745 CDS AJME02000030.1 2061 2801 3 + 741 tRNA:Cm32/Um32 methyltransferase RNA methylation;
tRNA modification Bacteria
fig|6666666.229900.peg.746 CDS AJME02000030.1 2863 3300 1 + 438 Iron-sulfur cluster regulator IscR Alanine biosynthesis;
Rrf2 family transcriptional regulators
fig|6666666.229900.peg.747 CDS AJME02000030.1 3397 4611 1 + 1215 Cysteine desulfurase (EC 2.8.1.7), IscS subfamily Alanine biosynthesis;
Thiamin biosynthesis;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.229900.peg.748 CDS AJME02000030.1 4671 5054 3 + 384 Iron-sulfur cluster assembly scaffold protein IscU Alanine biosynthesis;
tRNA modification Bacteria
fig|6666666.229900.peg.749 CDS AJME02000030.1 5186 5509 2 + 324 Iron binding protein IscA for iron-sulfur cluster assembly Alanine biosynthesis;
tRNA modification Bacteria
fig|6666666.229900.peg.750 CDS AJME02000030.1 5521 6042 1 + 522 Chaperone protein HscB Protein chaperones;
tRNA modification Bacteria
fig|6666666.229900.peg.751 CDS AJME02000030.1 6063 7922 3 + 1860 Chaperone protein HscA Alanine biosynthesis;
Protein chaperones;
tRNA modification Bacteria
fig|6666666.229900.peg.752 CDS AJME02000030.1 7934 8275 2 + 342 Ferredoxin, 2Fe-2S Alanine biosynthesis;
Soluble cytochromes and functionally related electron carriers;
tRNA modification Bacteria
fig|6666666.229900.peg.753 CDS AJME02000030.1 8275 8469 1 + 195 Believed to be involved in assembly of Fe-S clusters tRNA modification Bacteria
fig|6666666.229900.peg.754 CDS AJME02000030.1 10663 8603 -1 - 2061 Methionyl-tRNA synthetase (EC 6.1.1.10) Scaffold proteins for [4Fe-4S] cluster assembly (MRP family);
tRNA aminoacylation, Met
fig|6666666.229900.peg.755 CDS AJME02000030.1 10836 11948 3 + 1113 Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like Scaffold proteins for [4Fe-4S] cluster assembly (MRP family)
fig|6666666.229900.peg.756 CDS AJME02000031.1 10 357 1 + 348 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.267) CBSS-83331.1.peg.3039;
Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.229900.peg.757 CDS AJME02000031.1 379 1098 1 + 720 Undecaprenyl diphosphate synthase (EC 2.5.1.31) CBSS-83331.1.peg.3039;
Isoprenoid Biosynthesis;
Isoprenoinds for Quinones;
Polyprenyl Diphosphate Biosynthesis
fig|6666666.229900.peg.758 CDS AJME02000031.1 1113 1982 3 + 870 Phosphatidate cytidylyltransferase (EC 2.7.7.41) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229900.peg.759 CDS AJME02000031.1 1991 3325 2 + 1335 Membrane-associated zinc metalloprotease - none -
fig|6666666.229900.peg.760 CDS AJME02000031.1 3344 5755 2 + 2412 Outer membrane protein assembly factor YaeT precursor Lipopolysaccharide assembly;
Llipid A biosynthesis cluster
fig|6666666.229900.peg.761 CDS AJME02000031.1 5860 6435 1 + 576 Outer membrane chaperone Skp (OmpH) precursor @ Outer membrane protein H precursor Lipopolysaccharide assembly;
Llipid A biosynthesis cluster;
Periplasmic Stress Response
fig|6666666.229900.peg.762 CDS AJME02000031.1 6435 7457 3 + 1023 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC 2.3.1.-) KDO2-Lipid A biosynthesis;
Llipid A biosynthesis cluster
fig|6666666.229900.peg.763 CDS AJME02000031.1 7594 8004 1 + 411 3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabZ form (EC 4.2.1.59) Fatty Acid Biosynthesis FASII;
Llipid A biosynthesis cluster
fig|6666666.229900.peg.764 CDS AJME02000031.1 8025 8813 3 + 789 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase (EC 2.3.1.129) KDO2-Lipid A biosynthesis;
Llipid A biosynthesis cluster
fig|6666666.229900.peg.765 CDS AJME02000031.1 8898 10082 3 + 1185 Lipid-A-disaccharide synthase (EC 2.4.1.182) KDO2-Lipid A biosynthesis;
Llipid A biosynthesis cluster
fig|6666666.229900.peg.766 CDS AJME02000031.1 10075 10674 1 + 600 Ribonuclease HII (EC 3.1.26.4) Conserved gene cluster associated with Met-tRNA formyltransferase;
Ribonuclease H
fig|6666666.229900.peg.767 CDS AJME02000031.1 10714 12582 1 + 1869 Putative transport protein - none -
fig|6666666.229900.peg.768 CDS AJME02000031.1 12593 13201 2 + 609 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229900.peg.769 CDS AJME02000031.1 13212 13844 3 + 633 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229900.peg.770 CDS AJME02000031.1 13844 14773 2 + 930 Phosphatidate cytidylyltransferase (EC 2.7.7.41) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229900.peg.771 CDS AJME02000031.1 14863 15444 1 + 582 Molybdopterin biosynthesis molybdochelatase MogA Molybdenum cofactor biosynthesis
fig|6666666.229900.peg.772 CDS AJME02000032.1 2129 183 -2 - 1947 ABC transporter ATP-binding protein - none -
fig|6666666.229900.peg.773 CDS AJME02000032.1 2123 2242 2 + 120 hypothetical protein - none -
fig|6666666.229900.peg.774 CDS AJME02000032.1 2282 2584 2 + 303 FIG022160: hypothetical toxin - none -
fig|6666666.229900.peg.775 CDS AJME02000032.1 2586 2879 3 + 294 FIG045511: hypothetical antitoxin (to FIG022160: hypothetical toxin) - none -
fig|6666666.229900.peg.776 CDS AJME02000032.1 4268 2916 -2 - 1353 Putative dNTP triphosphohydrolase, associated with nucleotidase YfbR Purine conversions;
dNTP triphosphohydrolase protein family
fig|6666666.229900.peg.777 CDS AJME02000032.1 4962 4270 -3 - 693 LrgA-associated membrane protein LrgB Murein hydrolase regulation and cell death
fig|6666666.229900.peg.778 CDS AJME02000032.1 5321 4962 -2 - 360 Antiholin-like protein LrgA Murein hydrolase regulation and cell death
fig|6666666.229900.peg.779 CDS AJME02000032.1 5858 6244 2 + 387 Phage integrase - none -
fig|6666666.229900.peg.780 CDS AJME02000032.1 6298 6948 1 + 651 Integrase - none -
fig|6666666.229900.peg.781 CDS AJME02000032.1 7237 7058 -1 - 180 FIG050068: DNA-binding protein - none -
fig|6666666.229900.peg.782 CDS AJME02000033.1 208 62 -1 - 147 hypothetical protein - none -
fig|6666666.229900.peg.783 CDS AJME02000034.1 139 816 1 + 678 hypothetical protein - none -
fig|6666666.229900.peg.784 CDS AJME02000034.1 1282 1692 1 + 411 Preprotein translocase subunit SecE (TC 3.A.5.1.1) LSU ribosomal proteins cluster
fig|6666666.229900.peg.785 CDS AJME02000034.1 1694 2245 2 + 552 Transcription antitermination protein NusG LSU ribosomal proteins cluster;
Transcription factors bacterial
fig|6666666.229900.peg.786 CDS AJME02000034.1 2401 2829 1 + 429 LSU ribosomal protein L11p (L12e) LSU ribosomal proteins cluster
fig|6666666.229900.peg.787 CDS AJME02000034.1 2834 3523 2 + 690 LSU ribosomal protein L1p (L10Ae) LSU ribosomal proteins cluster
fig|6666666.229900.peg.788 CDS AJME02000034.1 3538 3708 1 + 171 hypothetical protein - none -
fig|6666666.229900.peg.789 CDS AJME02000034.1 3879 4370 3 + 492 LSU ribosomal protein L10p (P0) LSU ribosomal proteins cluster
fig|6666666.229900.peg.790 CDS AJME02000034.1 4422 4793 3 + 372 LSU ribosomal protein L7/L12 (P1/P2) LSU ribosomal proteins cluster
fig|6666666.229900.peg.791 CDS AJME02000034.1 5064 9092 3 + 4029 DNA-directed RNA polymerase beta subunit (EC 2.7.7.6) Mycobacterium virulence operon involved in DNA transcription;
RNA polymerase bacterial
fig|6666666.229900.peg.792 CDS AJME02000034.1 9195 13463 3 + 4269 DNA-directed RNA polymerase beta@1 subunit (EC 2.7.7.6) Mycobacterium virulence operon involved in DNA transcription;
RNA polymerase bacterial
fig|6666666.229900.peg.793 CDS AJME02000034.1 13933 13712 -1 - 222 probable transcription regulator - none -
fig|6666666.229900.peg.794 CDS AJME02000034.1 14628 14380 -3 - 249 Mobile element protein - none -
fig|6666666.229900.peg.795 CDS AJME02000034.1 14982 14791 -3 - 192 Mobile element protein - none -
fig|6666666.229900.peg.796 CDS AJME02000034.1 15418 15197 -1 - 222 Cu(I)-responsive transcriptional regulator Copper homeostasis
fig|6666666.229900.peg.797 CDS AJME02000034.1 15677 15889 2 + 213 Copper chaperone Copper homeostasis
fig|6666666.229900.peg.798 CDS AJME02000034.1 15976 18135 1 + 2160 Copper-translocating P-type ATPase (EC 3.6.3.4) Copper Transport System;
Copper homeostasis
fig|6666666.229900.peg.799 CDS AJME02000034.1 18208 18987 1 + 780 membrane protein, putative - none -
fig|6666666.229900.peg.800 CDS AJME02000034.1 19319 19519 2 + 201 Phage-related protein - none -
fig|6666666.229900.peg.801 CDS AJME02000034.1 19512 19835 3 + 324 FIG074102: hypothetical protein - none -
fig|6666666.229900.peg.802 CDS AJME02000034.1 21130 19898 -1 - 1233 ATP-dependent Clp protease ATP-binding subunit ClpX Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229900.peg.803 CDS AJME02000034.1 21706 21140 -1 - 567 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent;
cAMP signaling in bacteria
fig|6666666.229900.peg.804 CDS AJME02000034.1 21855 22001 3 + 147 hypothetical protein - none -
fig|6666666.229900.peg.805 CDS AJME02000034.1 23566 21965 -1 - 1602 Dca - none -
fig|6666666.229900.peg.806 CDS AJME02000034.1 23798 26071 2 + 2274 Glutathione biosynthesis bifunctional protein gshF (EC 6.3.2.2)(EC 6.3.2.3) Glutathione: Biosynthesis and gamma-glutamyl cycle
fig|6666666.229900.peg.807 CDS AJME02000035.1 691 443 -1 - 249 hypothetical protein - none -
fig|6666666.229900.peg.808 CDS AJME02000035.1 982 770 -1 - 213 hypothetical protein - none -
fig|6666666.229900.peg.809 CDS AJME02000035.1 1115 2260 2 + 1146 FIG00698503: hypothetical protein - none -
fig|6666666.229900.peg.810 CDS AJME02000035.1 2281 2610 1 + 330 putative single stranded DNA-binding protien - none -
fig|6666666.229900.peg.811 CDS AJME02000035.1 3088 3309 1 + 222 hypothetical protein - none -
fig|6666666.229900.peg.812 CDS AJME02000035.1 3419 4588 2 + 1170 hypothetical protein - none -
fig|6666666.229900.peg.813 CDS AJME02000035.1 4596 4901 3 + 306 putative phage-related membrane protein - none -
fig|6666666.229900.peg.814 CDS AJME02000035.1 4909 6039 1 + 1131 putative phage-related secreted protein - none -
fig|6666666.229900.peg.815 CDS AJME02000035.1 6017 7171 2 + 1155 FIG00698722: hypothetical protein - none -
fig|6666666.229900.peg.816 CDS AJME02000036.1 47 724 2 + 678 Methionine ABC transporter permease protein Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229900.peg.817 CDS AJME02000036.1 759 1601 3 + 843 Methionine ABC transporter substrate-binding protein Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229900.peg.818 CDS AJME02000036.1 1706 2203 2 + 498 Phospholipid-binding protein - none -
fig|6666666.229900.peg.819 CDS AJME02000036.1 2322 2798 3 + 477 tRNA (cytidine(34)-2@1-O)-methyltransferase (EC 2.1.1.207) Biotin synthesis cluster;
RNA methylation
fig|6666666.229900.peg.820 CDS AJME02000036.1 3769 2894 -1 - 876 Membrane protein LAPB - none -
fig|6666666.229900.peg.821 CDS AJME02000036.1 3892 3779 -1 - 114 hypothetical protein - none -
fig|6666666.229900.peg.822 CDS AJME02000036.1 3902 4516 2 + 615 GTP-binding protein EngB Universal GTPases
fig|6666666.229900.peg.823 CDS AJME02000036.1 4631 6166 2 + 1536 MG(2+) CHELATASE FAMILY PROTEIN / ComM-related protein - none -
fig|6666666.229900.peg.824 CDS AJME02000036.1 7005 6178 -3 - 828 Putative periplasmic protein YibQ, distant homology with nucleoside diphosphatase and polysaccharide deacetylase CBSS-224911.1.peg.435;
Phosphoglycerate mutase protein family
fig|6666666.229900.peg.825 CDS AJME02000036.1 8219 7002 -2 - 1218 Periplasmic septal ring factor with murein hydrolase activity EnvC/YibP CBSS-224911.1.peg.435;
Glutaredoxins;
Phosphoglycerate mutase protein family
fig|6666666.229900.peg.826 CDS AJME02000036.1 10128 8470 -3 - 1659 Phosphoglucosamine mutase (EC 5.4.2.10) Sialic Acid Metabolism;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229900.peg.827 CDS AJME02000036.1 10434 11117 3 + 684 Phosphoglycerate mutase (EC 5.4.2.1) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis;
Phosphoglycerate mutase protein family
fig|6666666.229900.peg.828 CDS AJME02000037.1 156 1466 3 + 1311 hypothetical protein - none -
fig|6666666.229900.peg.829 CDS AJME02000037.1 1459 3693 1 + 2235 hypothetical protein - none -
fig|6666666.229900.peg.830 CDS AJME02000037.1 3672 4856 3 + 1185 hypothetical protein - none -
fig|6666666.229900.peg.831 CDS AJME02000037.1 8407 4931 -1 - 3477 DNA polymerase III alpha subunit (EC 2.7.7.7) - none -
fig|6666666.229900.peg.832 CDS AJME02000037.1 8372 8551 2 + 180 hypothetical protein - none -
fig|6666666.229900.peg.833 CDS AJME02000037.1 8606 10393 2 + 1788 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) Biotin biosynthesis;
Biotin synthesis cluster
fig|6666666.229900.peg.834 CDS AJME02000037.1 10410 10526 3 + 117 hypothetical protein - none -
fig|6666666.229900.peg.835 CDS AJME02000037.1 11188 16644 1 + 5457 Autotransporter adhesin - none -
fig|6666666.229900.peg.836 CDS AJME02000037.1 16897 19023 1 + 2127 Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) Ribonucleotide reduction
fig|6666666.229900.peg.837 CDS AJME02000037.1 19204 19323 1 + 120 hypothetical protein - none -
fig|6666666.229900.peg.838 CDS AJME02000037.1 19625 20092 2 + 468 Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) Ribonucleotide reduction
fig|6666666.229900.peg.839 CDS AJME02000037.1 20907 20119 -3 - 789 Putative deoxyribonuclease YjjV Deoxyribose and Deoxynucleoside Catabolism;
YcfH
fig|6666666.229900.peg.840 CDS AJME02000037.1 21191 20910 -2 - 282 hypothetical protein - none -
fig|6666666.229900.peg.841 CDS AJME02000037.1 21339 21184 -3 - 156 hypothetical protein - none -
fig|6666666.229900.peg.842 CDS AJME02000037.1 21945 21433 -3 - 513 Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase;
Queuosine-Archaeosine Biosynthesis
fig|6666666.229900.peg.843 CDS AJME02000037.1 22015 23424 1 + 1410 Cysteinyl-tRNA synthetase (EC 6.1.1.16) tRNA aminoacylation, Cys
fig|6666666.229900.peg.844 CDS AJME02000037.1 24313 23756 -1 - 558 hypothetical protein - none -
fig|6666666.229900.peg.845 CDS AJME02000037.1 27480 24757 -3 - 2724 hypothetical protein - none -
fig|6666666.229900.peg.846 CDS AJME02000037.1 28106 27630 -2 - 477 hypothetical protein - none -
fig|6666666.229900.peg.847 CDS AJME02000038.1 1374 799 -3 - 576 unknown - none -
fig|6666666.229900.peg.848 CDS AJME02000038.1 1561 1361 -1 - 201 hypothetical protein - none -
fig|6666666.229900.peg.849 CDS AJME02000038.1 1893 1561 -3 - 333 hypothetical protein - none -
fig|6666666.229900.peg.850 CDS AJME02000038.1 2710 1886 -1 - 825 FIG00698594: hypothetical protein - none -
fig|6666666.229900.peg.851 CDS AJME02000038.1 3337 3035 -1 - 303 hypothetical protein - none -
fig|6666666.229900.peg.852 CDS AJME02000038.1 4167 3664 -3 - 504 hypothetical protein - none -
fig|6666666.229900.peg.853 CDS AJME02000038.1 5338 4241 -1 - 1098 FIG00904318: hypothetical protein - none -
fig|6666666.229900.peg.854 CDS AJME02000038.1 5798 5424 -2 - 375 hypothetical protein - none -
fig|6666666.229900.peg.855 CDS AJME02000038.1 6020 5808 -2 - 213 FIG00696418: hypothetical protein - none -
fig|6666666.229900.peg.856 CDS AJME02000038.1 6343 6017 -1 - 327 hypothetical protein - none -
fig|6666666.229900.peg.857 CDS AJME02000038.1 6619 6371 -1 - 249 hypothetical protein - none -
fig|6666666.229900.peg.858 CDS AJME02000038.1 6839 6630 -2 - 210 possible prophage CP4-57 regulatory protein - none -
fig|6666666.229900.peg.859 CDS AJME02000038.1 7860 7024 -3 - 837 hypothetical protein - none -
fig|6666666.229900.peg.860 CDS AJME02000038.1 9110 8043 -2 - 1068 Integrase - none -
fig|6666666.229900.peg.861 CDS AJME02000038.1 10380 10153 -3 - 228 FIG00354920: hypothetical protein - none -
fig|6666666.229900.peg.862 CDS AJME02000038.1 13028 10377 -2 - 2652 Putative uncharacterized protein ydbH - none -
fig|6666666.229900.peg.863 CDS AJME02000039.1 215 3019 2 + 2805 hypothetical protein - none -
fig|6666666.229900.peg.864 CDS AJME02000039.1 3059 3889 2 + 831 hypothetical protein - none -
fig|6666666.229900.peg.865 CDS AJME02000039.1 4035 4157 3 + 123 hypothetical protein - none -
fig|6666666.229900.peg.866 CDS AJME02000039.1 4461 5012 3 + 552 hypothetical protein - none -
fig|6666666.229900.peg.867 CDS AJME02000039.1 5057 5194 2 + 138 hypothetical protein - none -
fig|6666666.229900.peg.868 CDS AJME02000039.1 5468 5274 -2 - 195 hypothetical protein - none -
fig|6666666.229900.peg.869 CDS AJME02000039.1 7502 6342 -2 - 1161 hypothetical protein - none -
fig|6666666.229900.peg.870 CDS AJME02000039.1 7722 7844 3 + 123 hypothetical protein - none -
fig|6666666.229900.peg.871 CDS AJME02000039.1 8413 9270 1 + 858 Methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5) / Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9) 5-FCL-like protein;
One-carbon metabolism by tetrahydropterines;
One-carbon metabolism by tetrahydropterines;
Serine-glyoxylate cycle;
Serine-glyoxylate cycle
fig|6666666.229900.peg.872 CDS AJME02000039.1 10993 9359 -1 - 1635 Heat shock protein 60 family chaperone GroEL GroEL GroES
fig|6666666.229900.peg.873 CDS AJME02000039.1 11403 11113 -3 - 291 Heat shock protein 60 family co-chaperone GroES GroEL GroES
fig|6666666.229900.peg.874 CDS AJME02000039.1 11972 11490 -2 - 483 FxsA protein - none -
fig|6666666.229900.peg.875 CDS AJME02000039.1 12202 13620 1 + 1419 Aspartate ammonia-lyase (EC 4.3.1.1) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229900.peg.876 CDS AJME02000039.1 13801 14838 1 + 1038 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) LOS core oligosaccharide biosynthesis
fig|6666666.229900.peg.877 CDS AJME02000039.1 16343 15507 -2 - 837 PTS system, mannose-specific IID component (EC 2.7.1.69) Mannose Metabolism;
Sialic Acid Metabolism
fig|6666666.229900.peg.878 CDS AJME02000039.1 17162 16359 -2 - 804 PTS system, mannose-specific IIC component (EC 2.7.1.69) Mannose Metabolism;
Sialic Acid Metabolism
fig|6666666.229900.peg.879 CDS AJME02000039.1 18172 17174 -1 - 999 PTS system, mannose-specific IIA component (EC 2.7.1.69) / PTS system, mannose-specific IIB component (EC 2.7.1.69) Mannose Metabolism;
Mannose Metabolism;
Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229900.peg.880 CDS AJME02000039.1 18397 18284 -1 - 114 hypothetical protein - none -
fig|6666666.229900.peg.881 CDS AJME02000039.1 18457 19914 1 + 1458 Permeases of the major facilitator superfamily - none -
fig|6666666.229900.peg.882 CDS AJME02000039.1 21113 19941 -2 - 1173 Xylose activator XylR (AraC family) Xylose utilization
fig|6666666.229900.peg.883 CDS AJME02000039.1 21102 21224 3 + 123 hypothetical protein - none -
fig|6666666.229900.peg.884 CDS AJME02000039.1 22574 21228 -2 - 1347 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229900.peg.885 CDS AJME02000039.1 23457 22627 -3 - 831 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229900.peg.886 CDS AJME02000039.1 25031 23904 -2 - 1128 Xylose ABC transporter, permease protein XylH Xylose utilization
fig|6666666.229900.peg.887 CDS AJME02000039.1 26531 25089 -2 - 1443 D-xylose transport ATP-binding protein XylG Xylose utilization
fig|6666666.229900.peg.888 CDS AJME02000039.1 27604 26606 -1 - 999 Xylose ABC transporter, periplasmic xylose-binding protein XylF Xylose utilization
fig|6666666.229900.peg.889 CDS AJME02000039.1 27862 29181 1 + 1320 Xylose isomerase (EC 5.3.1.5) Xylose utilization
fig|6666666.229900.peg.890 CDS AJME02000039.1 29231 30703 2 + 1473 Xylulose kinase (EC 2.7.1.17) Xylose utilization
fig|6666666.229900.peg.891 CDS AJME02000039.1 31292 31573 2 + 282 VgrG-3 protein - none -
fig|6666666.229900.peg.892 CDS AJME02000039.1 32161 32796 1 + 636 DNA transformation protein TfoX CBSS-83333.1.peg.946;
Orphan regulatory proteins
fig|6666666.229900.peg.893 CDS AJME02000039.1 33711 32863 -3 - 849 RNA polymerase sigma factor RpoH Heat shock dnaK gene cluster extended;
Transcription initiation, bacterial sigma factors
fig|6666666.229900.peg.894 CDS AJME02000039.1 34210 33896 -1 - 315 Uncharacterized protein conserved in bacteria - none -
fig|6666666.229900.peg.895 CDS AJME02000039.1 35251 34226 -1 - 1026 UDP-N-acetylenolpyruvoylglucosamine reductase (EC 1.1.1.158) Peptidoglycan Biosynthesis;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229900.peg.896 CDS AJME02000039.1 36969 35266 -3 - 1704 Nitrate/nitrite sensor protein (EC 2.7.3.-) - none -
fig|6666666.229900.peg.897 CDS AJME02000039.1 37015 37179 1 + 165 hypothetical protein - none -
fig|6666666.229900.peg.898 CDS AJME02000039.1 37245 37529 3 + 285 Periplasmic nitrate reductase component NapD - none -
fig|6666666.229900.peg.899 CDS AJME02000039.1 37563 40049 3 + 2487 Periplasmic nitrate reductase precursor (EC 1.7.99.4) - none -
fig|6666666.229900.peg.900 CDS AJME02000039.1 40097 40936 2 + 840 Ferredoxin-type protein NapG (periplasmic nitrate reductase) - none -
fig|6666666.229900.peg.901 CDS AJME02000039.1 40936 41817 1 + 882 Polyferredoxin NapH (periplasmic nitrate reductase) - none -
fig|6666666.229900.peg.902 CDS AJME02000039.1 41855 42304 2 + 450 Nitrate reductase cytochrome c550-type subunit - none -
fig|6666666.229900.peg.903 CDS AJME02000039.1 42318 42953 3 + 636 Cytochrome c-type protein NapC - none -
fig|6666666.229900.peg.904 CDS AJME02000039.1 44935 43028 -1 - 1908 Glutathionylspermidine synthase (EC 6.3.1.8) / Glutathionylspermidine amidohydrolase (EC 3.5.1.78) Glutathionylspermidine and Trypanothione;
Glutathionylspermidine and Trypanothione
fig|6666666.229900.peg.905 CDS AJME02000039.1 46096 45053 -1 - 1044 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) LOS core oligosaccharide biosynthesis
fig|6666666.229900.peg.906 CDS AJME02000039.1 46568 46116 -2 - 453 Fic family protein - none -
fig|6666666.229900.peg.907 CDS AJME02000039.1 47243 46719 -2 - 525 Fic family protein - none -
fig|6666666.229900.peg.908 CDS AJME02000039.1 48340 47414 -1 - 927 ADP-L-glycero-D-manno-heptose-6-epimerase (EC 5.1.3.20) LOS core oligosaccharide biosynthesis
fig|6666666.229900.peg.909 CDS AJME02000039.1 48369 48482 3 + 114 hypothetical protein - none -
fig|6666666.229900.peg.910 CDS AJME02000039.1 48620 49396 2 + 777 Protein HI0205 precursor - none -
fig|6666666.229900.peg.911 CDS AJME02000039.1 49423 51237 1 + 1815 5@1-nucleotidase (EC 3.1.3.5); NAD pyrophosphatase, periplasmic (EC 3.6.1.22) Purine conversions;
pyrimidine conversions
fig|6666666.229900.peg.912 CDS AJME02000040.1 74 472 2 + 399 Integrase - none -
fig|6666666.229900.peg.913 CDS AJME02000042.1 76 1389 1 + 1314 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) Metallocarboxypeptidases (EC 3.4.17.-);
Murein Hydrolases;
Peptidoglycan Biosynthesis
fig|6666666.229900.peg.914 CDS AJME02000042.1 2144 1488 -2 - 657 GTP cyclohydrolase I (EC 3.5.4.16) type 1 Folate Biosynthesis;
Folate biosynthesis cluster;
Molybdenum cofactor biosynthesis;
Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229900.peg.915 CDS AJME02000043.1 118 1152 1 + 1035 DNA polymerase IV (EC 2.7.7.7) DNA repair, bacterial
fig|6666666.229900.peg.916 CDS AJME02000044.1 313 624 1 + 312 LSU ribosomal protein L24p (L26e) - none -
fig|6666666.229900.peg.917 CDS AJME02000044.1 753 1181 3 + 429 LSU ribosomal protein L5p (L11e) - none -
fig|6666666.229900.peg.918 CDS AJME02000044.1 1194 1499 3 + 306 SSU ribosomal protein S14p (S29e) @ SSU ribosomal protein S14p (S29e), zinc-independent Ribosome SSU bacterial;
Ribosome SSU bacterial
fig|6666666.229900.peg.919 CDS AJME02000044.1 1536 1928 3 + 393 SSU ribosomal protein S8p (S15Ae) Ribosome SSU bacterial
fig|6666666.229900.peg.920 CDS AJME02000044.1 2166 2477 3 + 312 LSU ribosomal protein L6p (L9e) - none -
fig|6666666.229900.peg.921 CDS AJME02000044.1 2491 2844 1 + 354 LSU ribosomal protein L18p (L5e) - none -
fig|6666666.229900.peg.922 CDS AJME02000044.1 2860 3360 1 + 501 SSU ribosomal protein S5p (S2e) Ribosome SSU bacterial
fig|6666666.229900.peg.923 CDS AJME02000044.1 3550 3984 1 + 435 LSU ribosomal protein L15p (L27Ae) - none -
fig|6666666.229900.peg.924 CDS AJME02000044.1 3988 5313 1 + 1326 Preprotein translocase secY subunit (TC 3.A.5.1.1) - none -
fig|6666666.229900.peg.925 CDS AJME02000044.1 5340 5453 3 + 114 LSU ribosomal protein L36p - none -
fig|6666666.229900.peg.926 CDS AJME02000044.1 5591 5947 2 + 357 SSU ribosomal protein S13p (S18e) Ribosome SSU bacterial
fig|6666666.229900.peg.927 CDS AJME02000044.1 5963 6352 2 + 390 SSU ribosomal protein S11p (S14e) Ribosome SSU bacterial
fig|6666666.229900.peg.928 CDS AJME02000044.1 6394 7002 1 + 609 SSU ribosomal protein S4p (S9e) Ribosome SSU bacterial
fig|6666666.229900.peg.929 CDS AJME02000044.1 7031 8020 2 + 990 DNA-directed RNA polymerase alpha subunit (EC 2.7.7.6) RNA polymerase bacterial
fig|6666666.229900.peg.930 CDS AJME02000044.1 8062 8451 1 + 390 LSU ribosomal protein L17p - none -
fig|6666666.229900.peg.931 CDS AJME02000044.1 9976 8747 -1 - 1230 Tyrosine-specific transport protein - none -
fig|6666666.229900.peg.932 CDS AJME02000044.1 10099 9986 -1 - 114 hypothetical protein - none -
fig|6666666.229900.peg.933 CDS AJME02000044.1 10789 10106 -1 - 684 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases - none -
fig|6666666.229900.peg.934 CDS AJME02000044.1 12076 10805 -1 - 1272 Nicotinamide-nucleotide adenylyltransferase, NadR family (EC 2.7.7.1) / Ribosylnicotinamide kinase (EC 2.7.1.22) NAD and NADP cofactor biosynthesis global;
NAD and NADP cofactor biosynthesis global
fig|6666666.229900.peg.935 CDS AJME02000044.1 12528 12403 -3 - 126 tRNA 5-methylaminomethyl-2-thiouridine synthase TusA mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.229900.peg.936 CDS AJME02000044.1 12605 12733 2 + 129 hypothetical protein - none -
fig|6666666.229900.peg.937 CDS AJME02000044.1 12730 12885 1 + 156 FIG000605: protein co-occurring with transport systems (COG1739) Transport system clustering with HemG
fig|6666666.229900.peg.938 CDS AJME02000044.1 12879 12998 3 + 120 FIG000605: protein co-occurring with transport systems (COG1739) Transport system clustering with HemG
fig|6666666.229900.peg.939 CDS AJME02000044.1 13029 13244 3 + 216 FIG000605: protein co-occurring with transport systems (COG1739) Transport system clustering with HemG
fig|6666666.229900.peg.940 CDS AJME02000044.1 13263 14726 3 + 1464 Potassium uptake protein TrkH Hyperosmotic potassium uptake;
Potassium homeostasis;
Potassium homeostasis;
Transport system clustering with HemG
fig|6666666.229900.peg.941 CDS AJME02000044.1 14726 15238 2 + 513 Protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-) Heme and Siroheme Biosynthesis;
Transport system clustering with HemG
fig|6666666.229900.peg.942 CDS AJME02000045.1 1411 95 -1 - 1317 Magnesium and cobalt efflux protein CorC CBSS-56780.10.peg.1536;
Copper homeostasis: copper tolerance;
Glycyl-tRNA synthetase containing cluster;
Magnesium transport;
tRNA-methylthiotransferase containing cluster
fig|6666666.229900.peg.943 CDS AJME02000045.1 1365 1505 3 + 141 hypothetical protein - none -
fig|6666666.229900.peg.944 CDS AJME02000045.1 2026 1502 -1 - 525 FIG00696143: hypothetical protein - none -
fig|6666666.229900.peg.945 CDS AJME02000045.1 2840 2058 -2 - 783 Putative deoxyribonuclease YcfH YcfH
fig|6666666.229900.peg.946 CDS AJME02000045.1 3827 2844 -2 - 984 DNA polymerase III delta prime subunit (EC 2.7.7.7) - none -
fig|6666666.229900.peg.947 CDS AJME02000045.1 4456 3824 -1 - 633 Thymidylate kinase (EC 2.7.4.9) pyrimidine conversions
fig|6666666.229900.peg.948 CDS AJME02000045.1 5501 4458 -2 - 1044 FIG004453: protein YceG like CBSS-323097.3.peg.2594;
Cluster containing Alanyl-tRNA synthetase;
tRNA modification Bacteria
fig|6666666.229900.peg.949 CDS AJME02000045.1 5978 5640 -2 - 339 Nitrogen regulatory protein P-II Ammonia assimilation
fig|6666666.229900.peg.950 CDS AJME02000045.1 6812 6054 -2 - 759 Transcriptional regulators of sugar metabolism - none -
fig|6666666.229900.peg.951 CDS AJME02000045.1 7089 7910 3 + 822 D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) Polyhydroxybutyrate metabolism
fig|6666666.229900.peg.952 CDS AJME02000045.1 7913 9157 2 + 1245 Predicted pyridoxine biosynthesis protein (probably from glycolaldehide) - none -
fig|6666666.229900.peg.953 CDS AJME02000045.1 9154 9786 1 + 633 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases - none -
fig|6666666.229900.peg.954 CDS AJME02000045.1 9789 10565 3 + 777 Hydroxypyruvate isomerase (EC 5.3.1.22) Glycerate metabolism
fig|6666666.229900.peg.955 CDS AJME02000045.1 10654 12006 1 + 1353 Low-affinity gluconate/H+ symporter GntU D-gluconate and ketogluconates metabolism
fig|6666666.229900.peg.956 CDS AJME02000045.1 12031 13371 1 + 1341 FIG00782214: hypothetical protein - none -
fig|6666666.229900.peg.957 CDS AJME02000045.1 13389 14081 3 + 693 Metal-dependent hydrolase - none -
fig|6666666.229900.peg.958 CDS AJME02000045.1 14181 14053 -3 - 129 hypothetical protein - none -
fig|6666666.229900.peg.959 CDS AJME02000045.1 14249 15925 2 + 1677 Lysophospholipase (EC 3.1.1.5) Triacylglycerol metabolism
fig|6666666.229900.peg.960 CDS AJME02000045.1 16121 16939 2 + 819 HMP-PP hydrolase (pyridoxal phosphatase) Cof, detected in genetic screen for thiamin metabolic genes (PMID:15292217) - none -
fig|6666666.229900.peg.961 CDS AJME02000045.1 19743 17143 -3 - 2601 DNA mismatch repair protein MutS DNA repair, bacterial MutL-MutS system;
DNA repair system including RecA, MutS and a hypothetical protein
fig|6666666.229900.peg.962 CDS AJME02000046.1 2221 119 -1 - 2103 Translation elongation factor G Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Translation elongation factor G family;
Translation elongation factors bacterial;
Universal GTPases
fig|6666666.229900.peg.963 CDS AJME02000046.1 2806 2336 -1 - 471 SSU ribosomal protein S7p (S5e) Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Ribosome SSU bacterial
fig|6666666.229900.peg.964 CDS AJME02000046.1 3333 2959 -3 - 375 SSU ribosomal protein S12p (S23e) Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Ribosomal protein S12p Asp methylthiotransferase;
Ribosome SSU bacterial
fig|6666666.229900.peg.965 CDS AJME02000046.1 3863 3555 -2 - 309 Ketol-acid reductoisomerase (EC 1.1.1.86) Coenzyme A Biosynthesis
fig|6666666.229900.peg.966 CDS AJME02000046.1 4486 4671 1 + 186 HTH-type transcriptional regulator IlvY Alanine biosynthesis;
LysR-family proteins in Escherichia coli;
LysR-family proteins in Salmonella enterica Typhimurium
fig|6666666.229900.peg.967 CDS AJME02000046.1 4704 5585 3 + 882 Protein rarD - none -
fig|6666666.229900.peg.968 CDS AJME02000046.1 6380 5580 -2 - 801 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) Chorismate Synthesis;
Cluster containing Alanyl-tRNA synthetase;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229900.peg.969 CDS AJME02000046.1 6935 6384 -2 - 552 TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA - none -
fig|6666666.229900.peg.970 CDS AJME02000046.1 7479 6940 -3 - 540 Similar to C-terminal Zn-finger domain of DNA topoisomerase I Conserved gene cluster associated with Met-tRNA formyltransferase;
DNA topoisomerases, Type I, ATP-independent
fig|6666666.229900.peg.971 CDS AJME02000046.1 7482 9236 3 + 1755 DNA recombination protein RmuC DNA repair, bacterial
fig|6666666.229900.peg.972 CDS AJME02000046.1 9257 9910 2 + 654 FIG00903983: hypothetical protein - none -
fig|6666666.229900.peg.973 CDS AJME02000046.1 9922 10248 1 + 327 Thiosulfate sulfurtransferase GlpE (EC 2.8.1.1) Single-Rhodanese-domain proteins
fig|6666666.229900.peg.974 CDS AJME02000046.1 10574 10260 -2 - 315 Uncharacterized protein PM1437 - none -
fig|6666666.229900.peg.975 CDS AJME02000046.1 10618 11493 1 + 876 GlpG protein (membrane protein of glp regulon) - none -
fig|6666666.229900.peg.976 CDS AJME02000046.1 11555 12310 2 + 756 Glycerol-3-phosphate regulon repressor GlpR - none -
fig|6666666.229900.peg.977 CDS AJME02000046.1 12645 15101 3 + 2457 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229900.peg.978 CDS AJME02000046.1 17801 15984 -2 - 1818 ABC transporter ATP-binding protein - none -
fig|6666666.229900.peg.979 CDS AJME02000046.1 17925 19583 3 + 1659 Mediator of hyperadherence YidE - none -
fig|6666666.229900.peg.980 CDS AJME02000046.1 19682 19551 -2 - 132 hypothetical protein - none -
fig|6666666.229900.peg.981 CDS AJME02000046.1 19740 20453 3 + 714 Uridine monophosphate kinase (EC 2.7.4.22) CBSS-312309.3.peg.1965;
Ribosome recycling related cluster
fig|6666666.229900.peg.982 CDS AJME02000046.1 20521 20664 1 + 144 hypothetical protein - none -
fig|6666666.229900.peg.983 CDS AJME02000046.1 20678 21235 2 + 558 Ribosome recycling factor Ribosome recycling related cluster;
Translation termination factors bacterial
fig|6666666.229900.peg.984 CDS AJME02000047.1 95 820 2 + 726 hypothetical protein - none -
fig|6666666.229900.peg.985 CDS AJME02000047.1 824 1432 2 + 609 hypothetical protein - none -
fig|6666666.229900.peg.986 CDS AJME02000047.1 1425 3575 3 + 2151 hypothetical protein - none -
fig|6666666.229900.peg.987 CDS AJME02000047.1 3578 4387 2 + 810 hypothetical protein - none -
fig|6666666.229900.peg.988 CDS AJME02000047.1 4521 4775 3 + 255 hypothetical protein - none -
fig|6666666.229900.peg.989 CDS AJME02000048.1 42 1184 3 + 1143 Translation elongation factor Tu Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Translation elongation factors bacterial;
Universal GTPases
fig|6666666.229900.peg.990 CDS AJME02000049.1 1024 83 -1 - 942 Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229900.peg.991 CDS AJME02000049.1 1187 2674 2 + 1488 Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229900.peg.992 CDS AJME02000049.1 2690 3718 2 + 1029 Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229900.peg.993 CDS AJME02000049.1 3724 4437 1 + 714 L-xylulose/3-keto-L-gulonate kinase (EC 2.7.1.-) L-ascorbate utilization (and related gene clusters)
fig|6666666.229900.peg.994 CDS AJME02000049.1 4418 5170 2 + 753 L-xylulose/3-keto-L-gulonate kinase (EC 2.7.1.-) L-ascorbate utilization (and related gene clusters)
fig|6666666.229900.peg.995 CDS AJME02000049.1 7537 5189 -1 - 2349 Transcription accessory protein (S1 RNA-binding domain) CBSS-243265.1.peg.198;
Cell division-ribosomal stress proteins cluster;
Transcription factors bacterial
fig|6666666.229900.peg.996 CDS AJME02000050.1 1061 159 -2 - 903 hypothetical protein - none -
fig|6666666.229900.peg.997 CDS AJME02000050.1 2966 1107 -2 - 1860 Selenocysteine-specific translation elongation factor Selenocysteine metabolism
fig|6666666.229900.peg.998 CDS AJME02000050.1 4357 2963 -1 - 1395 L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1) Selenocysteine metabolism
fig|6666666.229900.peg.999 CDS AJME02000050.1 4501 6216 1 + 1716 Prolyl-tRNA synthetase (EC 6.1.1.15), bacterial type tRNA aminoacylation, Pro
fig|6666666.229900.peg.1000 CDS AJME02000050.1 6282 6611 3 + 330 Ethidium bromide-methyl viologen resistance protein EmrE - none -
fig|6666666.229900.peg.1001 CDS AJME02000050.1 6651 6905 3 + 255 YgfY COG2938 - none -
fig|6666666.229900.peg.1002 CDS AJME02000050.1 7038 7613 3 + 576 RNA polymerase sigma factor RpoE Transcription initiation, bacterial sigma factors
fig|6666666.229900.peg.1003 CDS AJME02000050.1 7652 8236 2 + 585 Sigma factor RpoE negative regulatory protein RseA Periplasmic Stress Response;
Transcription initiation, bacterial sigma factors
fig|6666666.229900.peg.1004 CDS AJME02000050.1 8319 9275 3 + 957 Sigma factor RpoE negative regulatory protein RseB precursor Periplasmic Stress Response;
Transcription initiation, bacterial sigma factors
fig|6666666.229900.peg.1005 CDS AJME02000050.1 9285 9722 3 + 438 Sigma factor RpoE regulatory protein RseC Transcription initiation, bacterial sigma factors
fig|6666666.229900.peg.1006 CDS AJME02000050.1 9803 10354 2 + 552 Molybdopterin-guanine dinucleotide biosynthesis protein MobB Molybdenum cofactor biosynthesis;
ar-431-EC Molybdopterin-guanine dinucleotide biosynthesis
fig|6666666.229900.peg.1007 CDS AJME02000050.1 10408 11163 1 + 756 Short chain dehydrogenase - none -
fig|6666666.229900.peg.1008 CDS AJME02000051.1 631 392 -1 - 240 Protein TadG, associated with Flp pilus assembly Widespread colonization island
fig|6666666.229900.peg.1009 CDS AJME02000051.1 2409 799 -3 - 1611 Protein TadG, associated with Flp pilus assembly Widespread colonization island
fig|6666666.229900.peg.1010 CDS AJME02000051.1 2742 2425 -3 - 318 Flp pilus assembly surface protein TadF, ATP/GTP-binding motif Widespread colonization island
fig|6666666.229900.peg.1011 CDS AJME02000051.1 4385 3663 -2 - 723 Flp pilus assembly protein TadD, contains TPR repeat Widespread colonization island
fig|6666666.229900.peg.1012 CDS AJME02000051.1 5280 4414 -3 - 867 Type II/IV secretion system protein TadC, associated with Flp pilus assembly Widespread colonization island
fig|6666666.229900.peg.1013 CDS AJME02000051.1 6164 5277 -2 - 888 Flp pilus assembly protein TadB Widespread colonization island
fig|6666666.229900.peg.1014 CDS AJME02000051.1 7444 6164 -1 - 1281 Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily Widespread colonization island
fig|6666666.229900.peg.1015 CDS AJME02000051.1 8582 7458 -2 - 1125 Type II/IV secretion system ATPase TadZ/CpaE, associated with Flp pilus assembly Widespread colonization island
fig|6666666.229900.peg.1016 CDS AJME02000051.1 9068 8598 -2 - 471 Flp pilus assembly protein RcpB Widespread colonization island
fig|6666666.229900.peg.1017 CDS AJME02000051.1 10360 9098 -1 - 1263 Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly Widespread colonization island
fig|6666666.229900.peg.1018 CDS AJME02000051.1 11306 10482 -2 - 825 Flp pilus assembly protein RcpC/CpaB Widespread colonization island
fig|6666666.229900.peg.1019 CDS AJME02000051.1 11538 11362 -3 - 177 Type IV prepilin peptidase TadV/CpaA Widespread colonization island
fig|6666666.229900.peg.1020 CDS AJME02000051.1 12359 12132 -2 - 228 Flp pilus assembly protein, pilin Flp Widespread colonization island
fig|6666666.229900.peg.1021 CDS AJME02000051.1 12925 13389 1 + 465 Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly CBSS-56780.10.peg.1536;
Glycyl-tRNA synthetase containing cluster;
tRNA-methylthiotransferase containing cluster
fig|6666666.229900.peg.1022 CDS AJME02000051.1 13551 14252 3 + 702 unknown - none -
fig|6666666.229900.peg.1023 CDS AJME02000051.1 14256 16178 3 + 1923 Predicted P-loop ATPase fused to an acetyltransferase COG1444 tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229900.peg.1024 CDS AJME02000051.1 16220 16393 2 + 174 hypothetical protein - none -
fig|6666666.229900.peg.1025 CDS AJME02000051.1 16847 20305 2 + 3459 Transcription-repair coupling factor Cell division-ribosomal stress proteins cluster;
Transcription factors bacterial;
Transcription repair cluster
fig|6666666.229900.peg.1026 CDS AJME02000051.1 20407 20991 1 + 585 Phosphoheptose isomerase 1 (EC 5.3.1.-) Capsular heptose biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.229900.peg.1027 CDS AJME02000051.1 21132 21866 3 + 735 Arginine ABC transporter, ATP-binding protein ArtP Arginine and Ornithine Degradation
fig|6666666.229900.peg.1028 CDS AJME02000051.1 21887 22606 2 + 720 Arginine ABC transporter, periplasmic arginine-binding protein ArtI Arginine and Ornithine Degradation
fig|6666666.229900.peg.1029 CDS AJME02000051.1 22611 23273 3 + 663 Arginine ABC transporter, permease protein ArtQ Arginine and Ornithine Degradation
fig|6666666.229900.peg.1030 CDS AJME02000051.1 23273 23959 2 + 687 Arginine ABC transporter, permease protein ArtM Arginine and Ornithine Degradation
fig|6666666.229900.peg.1031 CDS AJME02000051.1 24501 26096 3 + 1596 Carbon starvation protein A Carbon Starvation
fig|6666666.229900.peg.1032 CDS AJME02000051.1 26363 26821 2 + 459 Cell division protein MraZ 16S rRNA modification within P site of ribosome;
Bacterial Cell Division;
Bacterial Cytoskeleton
fig|6666666.229900.peg.1033 CDS AJME02000051.1 26931 27899 3 + 969 rRNA small subunit methyltransferase H 16S rRNA modification within P site of ribosome;
Bacterial Cell Division
fig|6666666.229900.peg.1034 CDS AJME02000051.1 27899 28216 2 + 318 Cell division protein FtsL 16S rRNA modification within P site of ribosome;
Bacterial Cell Division;
Bacterial Cytoskeleton;
Stationary phase repair cluster
fig|6666666.229900.peg.1035 CDS AJME02000051.1 28234 30057 1 + 1824 Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129) 16S rRNA modification within P site of ribosome;
Bacterial Cell Division;
Bacterial Cytoskeleton;
CBSS-83331.1.peg.3039;
Peptidoglycan Biosynthesis
fig|6666666.229900.peg.1036 CDS AJME02000051.1 30075 31541 3 + 1467 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo
fig|6666666.229900.peg.1037 CDS AJME02000051.1 31546 32925 1 + 1380 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase (EC 6.3.2.10) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo
fig|6666666.229900.peg.1038 CDS AJME02000051.1 32919 34004 3 + 1086 Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC 2.7.8.13) Peptidoglycan Biosynthesis
fig|6666666.229900.peg.1039 CDS AJME02000051.1 34031 35335 2 + 1305 UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC 6.3.2.9) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo
fig|6666666.229900.peg.1040 CDS AJME02000051.1 35350 36540 1 + 1191 Cell division protein FtsW Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ
fig|6666666.229900.peg.1041 CDS AJME02000051.1 36580 37644 1 + 1065 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) Peptidoglycan Biosynthesis;
cell division core of larger cluster
fig|6666666.229900.peg.1042 CDS AJME02000051.1 37715 39145 2 + 1431 UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo;
cell division cluster containing FtsQ
fig|6666666.229900.peg.1043 CDS AJME02000051.1 39158 40087 2 + 930 D-alanine--D-alanine ligase (EC 6.3.2.4) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo;
cell division cluster containing FtsQ
fig|6666666.229900.peg.1044 CDS AJME02000051.1 40084 40851 1 + 768 Cell division protein FtsQ Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ;
cell division core of larger cluster
fig|6666666.229900.peg.1045 CDS AJME02000051.1 40912 42156 1 + 1245 Cell division protein FtsA Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ;
cell division core of larger cluster
fig|6666666.229900.peg.1046 CDS AJME02000051.1 42240 43520 3 + 1281 Cell division protein FtsZ (EC 3.4.24.-) Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ;
cell division core of larger cluster
fig|6666666.229900.peg.1047 CDS AJME02000051.1 43558 44475 1 + 918 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC 3.5.1.108) KDO2-Lipid A biosynthesis
fig|6666666.229900.peg.1048 CDS AJME02000051.1 44674 45834 1 + 1161 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) Chorismate Synthesis;
Chorismate Synthesis;
Phenylalanine and Tyrosine Branches from Chorismate;
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229900.peg.1049 CDS AJME02000051.1 45968 47848 2 + 1881 Chaperone protein HtpG Protein chaperones
fig|6666666.229900.peg.1050 CDS AJME02000051.1 47914 48258 1 + 345 FIG138056: a glutathione-dependent thiol reductase A Glutathione-dependent Thiol Reductase Associated with a Step in Lysine Biosynthesis;
CBSS-584.1.peg.1352
fig|6666666.229900.peg.1051 CDS AJME02000051.1 48395 49528 2 + 1134 N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18) A Glutathione-dependent Thiol Reductase Associated with a Step in Lysine Biosynthesis;
CBSS-584.1.peg.1352;
Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229900.peg.1052 CDS AJME02000051.1 49530 50210 3 + 681 FIG009095: D,D-carboxypeptidase family protein CBSS-584.1.peg.1352
fig|6666666.229900.peg.1053 CDS AJME02000051.1 50456 51079 2 + 624 ADP-ribose pyrophosphatase (EC 3.6.1.13) CBSS-216591.1.peg.168;
NAD and NADP cofactor biosynthesis global;
Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229900.peg.1054 CDS AJME02000051.1 51130 51954 1 + 825 3@1,5@1-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17) cAMP signaling in bacteria
fig|6666666.229900.peg.1055 CDS AJME02000051.1 53292 52465 -3 - 828 FIG00711691: hypothetical protein - none -
fig|6666666.229900.peg.1056 CDS AJME02000051.1 53729 53265 -2 - 465 FIG00710847: hypothetical protein - none -
fig|6666666.229900.peg.1057 CDS AJME02000051.1 53951 54781 2 + 831 Queuosine Biosynthesis QueC ATPase Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229900.peg.1058 CDS AJME02000051.1 54906 56120 3 + 1215 ATPase component BioM of energizing module of biotin ECF transporter Biotin biosynthesis;
Biotin synthesis cluster
fig|6666666.229900.peg.1059 CDS AJME02000051.1 57227 56199 -2 - 1029 Alcohol dehydrogenase (EC 1.1.1.1) 5-FCL-like protein;
Butanol Biosynthesis;
Fermentations: Mixed acid;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229900.peg.1060 CDS AJME02000051.1 57498 59636 3 + 2139 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) RNA methylation
fig|6666666.229900.peg.1061 CDS AJME02000051.1 60077 59733 -2 - 345 Fumarate reductase subunit D Succinate dehydrogenase
fig|6666666.229900.peg.1062 CDS AJME02000051.1 60479 60087 -2 - 393 Fumarate reductase subunit C Succinate dehydrogenase
fig|6666666.229900.peg.1063 CDS AJME02000051.1 61261 60491 -1 - 771 Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) 5-FCL-like protein;
Serine-glyoxylate cycle;
Succinate dehydrogenase;
TCA Cycle
fig|6666666.229900.peg.1064 CDS AJME02000051.1 63074 61266 -2 - 1809 Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) Serine-glyoxylate cycle;
Succinate dehydrogenase;
TCA Cycle
fig|6666666.229900.peg.1065 CDS AJME02000051.1 63318 63130 -3 - 189 hypothetical protein - none -
fig|6666666.229900.peg.1066 CDS AJME02000051.1 63382 64353 1 + 972 Translation elongation factor P Lys34:lysine transferase Translation elongation factor P lysylation
fig|6666666.229900.peg.1067 CDS AJME02000051.1 65186 64419 -2 - 768 Iron(III) dicitrate transport ATP-binding protein FecE (TC 3.A.1.14.1) - none -
fig|6666666.229900.peg.1068 CDS AJME02000051.1 66169 65186 -1 - 984 Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1) - none -
fig|6666666.229900.peg.1069 CDS AJME02000051.1 67158 66169 -3 - 990 Iron(III) dicitrate transport system permease protein FecC (TC 3.A.1.14.1) - none -
fig|6666666.229900.peg.1070 CDS AJME02000051.1 68051 67158 -2 - 894 Iron(III) dicitrate transport system, periplasmic iron-binding protein FecB (TC 3.A.1.14.1) - none -
fig|6666666.229900.peg.1071 CDS AJME02000051.1 68890 68120 -1 - 771 Phosphoesterase (EC 3.1.-.-) - none -
fig|6666666.229900.peg.1072 CDS AJME02000051.1 69189 68866 -3 - 324 Phosphoesterase (EC 3.1.-.-) - none -
fig|6666666.229900.peg.1073 CDS AJME02000051.1 69260 69703 2 + 444 FIG000557: hypothetical protein co-occurring with RecR DNA processing cluster
fig|6666666.229900.peg.1074 CDS AJME02000051.1 69788 70390 2 + 603 Recombination protein RecR DNA processing cluster;
DNA repair, bacterial RecFOR pathway
fig|6666666.229900.peg.1075 CDS AJME02000051.1 70422 72359 3 + 1938 DNA topoisomerase III (EC 5.99.1.2) DNA processing cluster;
DNA topoisomerases, Type I, ATP-independent
fig|6666666.229900.peg.1076 CDS AJME02000051.1 72532 72861 1 + 330 Preprotein translocase subunit SecG (TC 3.A.5.1.1) CBSS-331978.3.peg.2915;
Murein hydrolase regulation and cell death
fig|6666666.229900.peg.1077 CDS AJME02000051.1 73045 73299 1 + 255 hypothetical protein - none -
fig|6666666.229900.peg.1078 CDS AJME02000051.1 73299 73499 3 + 201 hypothetical protein - none -
fig|6666666.229900.peg.1079 CDS AJME02000051.1 74329 73556 -1 - 774 Monofunctional biosynthetic peptidoglycan transglycosylase (EC 2.4.2.-) Peptidoglycan Biosynthesis
fig|6666666.229900.peg.1080 CDS AJME02000051.1 74615 74307 -2 - 309 Transcriptional repressor protein TrpR Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate);
Tryptophan synthesis
fig|6666666.229900.peg.1081 CDS AJME02000051.1 76864 74648 -1 - 2217 Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) Murein Hydrolases
fig|6666666.229900.peg.1082 CDS AJME02000051.1 77687 77391 -2 - 297 YciL protein Broadly distributed proteins not in subsystems;
CBSS-211586.9.peg.2729
fig|6666666.229900.peg.1083 CDS AJME02000051.1 78160 77690 -1 - 471 Acyl-CoA thioesterase YciA, involved in membrane biogenesis CBSS-211586.9.peg.2729;
Intracellular septation in Enterobacteria
fig|6666666.229900.peg.1084 CDS AJME02000051.1 78715 78164 -1 - 552 Intracellular septation protein IspA CBSS-211586.9.peg.2729;
Intracellular septation in Enterobacteria
fig|6666666.229900.peg.1085 CDS AJME02000051.1 79479 78721 -3 - 759 Membrane protein involved in the export of O-antigen and teichoic acid - none -
fig|6666666.229900.peg.1086 CDS AJME02000051.1 79671 79513 -3 - 159 hypothetical protein - none -
fig|6666666.229900.peg.1087 CDS AJME02000051.1 79750 80397 1 + 648 Outer membrane protein W precursor - none -
fig|6666666.229900.peg.1088 CDS AJME02000051.1 82140 80464 -3 - 1677 DNA repair protein RecN DNA repair, bacterial
fig|6666666.229900.peg.1089 CDS AJME02000051.1 83131 82214 -1 - 918 NAD kinase (EC 2.7.1.23) NAD and NADP cofactor biosynthesis global
fig|6666666.229900.peg.1090 CDS AJME02000051.1 83304 83176 -3 - 129 hypothetical protein - none -
fig|6666666.229900.peg.1091 CDS AJME02000051.1 83272 83850 1 + 579 Heat shock protein GrpE GroEL GroES;
Heat shock dnaK gene cluster extended;
Protein chaperones
fig|6666666.229900.peg.1092 CDS AJME02000051.1 85930 83960 -1 - 1971 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229900.peg.1093 CDS AJME02000052.1 122 1615 2 + 1494 PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69) Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism;
Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229900.peg.1094 CDS AJME02000052.1 2371 1673 -1 - 699 FIG005121: SAM-dependent methyltransferase (EC 2.1.1.-) CBSS-228410.1.peg.134;
CBSS-342610.3.peg.1536;
Glutathione: Non-redox reactions
fig|6666666.229900.peg.1095 CDS AJME02000052.1 2392 3093 1 + 702 Hydroxyacylglutathione hydrolase (EC 3.1.2.6) CBSS-228410.1.peg.134;
CBSS-342610.3.peg.1536;
Glutathione: Non-redox reactions;
Methylglyoxal Metabolism
fig|6666666.229900.peg.1096 CDS AJME02000052.1 3279 4583 3 + 1305 Glutamyl-tRNA reductase (EC 1.2.1.70) A Gammaproteobacteria Cluster Relating to Translation;
Heme and Siroheme Biosynthesis
fig|6666666.229900.peg.1097 CDS AJME02000052.1 4645 5868 1 + 1224 N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family Chitin and N-acetylglucosamine utilization
fig|6666666.229900.peg.1098 CDS AJME02000052.1 6876 6697 -3 - 180 hypothetical protein - none -
fig|6666666.229900.peg.1099 CDS AJME02000052.1 7179 7313 3 + 135 hypothetical protein - none -
fig|6666666.229900.peg.1100 CDS AJME02000052.1 7492 7626 1 + 135 Mobile element protein - none -
fig|6666666.229900.peg.1101 CDS AJME02000052.1 7784 7644 -2 - 141 hypothetical protein - none -
fig|6666666.229900.peg.1102 CDS AJME02000052.1 9706 9074 -1 - 633 hypothetical protein - none -
fig|6666666.229900.peg.1103 CDS AJME02000052.1 10851 10273 -3 - 579 hypothetical protein - none -
fig|6666666.229900.peg.1104 CDS AJME02000052.1 11139 10957 -3 - 183 hypothetical protein - none -
fig|6666666.229900.peg.1105 CDS AJME02000052.1 12110 11400 -2 - 711 hypothetical protein - none -
fig|6666666.229900.peg.1106 CDS AJME02000052.1 13303 12101 -1 - 1203 Carboxypeptidase - none -
fig|6666666.229900.peg.1107 CDS AJME02000052.1 13378 13524 1 + 147 hypothetical protein - none -
fig|6666666.229900.peg.1108 CDS AJME02000052.1 14119 13496 -1 - 624 hypothetical protein - none -
fig|6666666.229900.peg.1109 CDS AJME02000052.1 14849 14094 -2 - 756 hypothetical protein - none -
fig|6666666.229900.peg.1110 CDS AJME02000053.1 1847 420 -2 - 1428 Exodeoxyribonuclease I (EC 3.1.11.1) DNA Repair Base Excision
fig|6666666.229900.peg.1111 CDS AJME02000053.1 2731 1859 -1 - 873 Integral membrane protein - none -
fig|6666666.229900.peg.1112 CDS AJME02000053.1 7298 2808 -2 - 4491 Chromosome partition protein MukB DNA structural proteins, bacterial;
MukBEF Chromosome Condensation
fig|6666666.229900.peg.1113 CDS AJME02000053.1 8038 7298 -1 - 741 Chromosome partition protein MukE DNA structural proteins, bacterial;
MukBEF Chromosome Condensation
fig|6666666.229900.peg.1114 CDS AJME02000053.1 11520 8059 -3 - 3462 Putative 2-acylglycerophosphoethanolamine acyltransferase / acyl-acyl carrier protein synthetase (EC 6.2.1.20) - none -
fig|6666666.229900.peg.1115 CDS AJME02000053.1 11672 11535 -2 - 138 hypothetical protein - none -
fig|6666666.229900.peg.1116 CDS AJME02000053.1 13028 11700 -2 - 1329 Chromosome partition protein MukF DNA structural proteins, bacterial;
MukBEF Chromosome Condensation
fig|6666666.229900.peg.1117 CDS AJME02000053.1 14087 13206 -2 - 882 Murein-DD-endopeptidase (EC 3.4.99.-) Peptidoglycan Biosynthesis
fig|6666666.229900.peg.1118 CDS AJME02000053.1 14843 14235 -2 - 609 lipoprotein HlpB - none -
fig|6666666.229900.peg.1119 CDS AJME02000053.1 15278 14991 -2 - 288 LSU ribosomal protein L25p Transcription repair cluster
fig|6666666.229900.peg.1120 CDS AJME02000053.1 15492 16097 3 + 606 DedA protein DedA family of inner membrane proteins;
Uptake of selenate and selenite
fig|6666666.229900.peg.1121 CDS AJME02000053.1 18681 16216 -3 - 2466 Glycogen phosphorylase (EC 2.4.1.1) Glycogen metabolism;
Glycogen metabolism cluster;
Maltose and Maltodextrin Utilization
fig|6666666.229900.peg.1122 CDS AJME02000053.1 20244 18805 -3 - 1440 Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21) Glycogen metabolism;
Glycogen metabolism cluster
fig|6666666.229900.peg.1123 CDS AJME02000053.1 21756 20446 -3 - 1311 Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27) Glycogen metabolism;
Glycogen metabolism cluster
fig|6666666.229900.peg.1124 CDS AJME02000053.1 23792 21783 -2 - 2010 Glycogen debranching enzyme (EC 3.2.1.-) Glycogen metabolism;
Glycogen metabolism cluster
fig|6666666.229900.peg.1125 CDS AJME02000053.1 25984 23789 -1 - 2196 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) Glycogen metabolism;
Glycogen metabolism cluster
fig|6666666.229900.peg.1126 CDS AJME02000053.1 26541 25972 -3 - 570 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) Glycogen metabolism;
Glycogen metabolism cluster;
Maltose and Maltodextrin Utilization;
Maltose utilization cluster
fig|6666666.229900.peg.1127 CDS AJME02000053.1 27749 27000 -2 - 750 hypothetical protein - none -
fig|6666666.229900.peg.1128 CDS AJME02000053.1 28393 28100 -1 - 294 hypothetical protein - none -
fig|6666666.229900.peg.1129 CDS AJME02000053.1 29445 28582 -3 - 864 hypothetical protein - none -
fig|6666666.229900.peg.1130 CDS AJME02000053.1 30384 29710 -3 - 675 hypothetical protein - none -
fig|6666666.229900.peg.1131 CDS AJME02000053.1 30774 30640 -3 - 135 hypothetical protein - none -
fig|6666666.229900.peg.1132 CDS AJME02000054.1 1571 138 -2 - 1434 Putative GTP-binding protein YdgA - none -
fig|6666666.229900.peg.1133 CDS AJME02000054.1 1860 3761 3 + 1902 Chaperone protein DnaK GroEL GroES;
Heat shock dnaK gene cluster extended;
Protein chaperones
fig|6666666.229900.peg.1134 CDS AJME02000054.1 4196 5323 2 + 1128 Chaperone protein DnaJ GroEL GroES;
Heat shock dnaK gene cluster extended;
Protein chaperones
fig|6666666.229900.peg.1135 CDS AJME02000054.1 5748 5401 -3 - 348 Programmed cell death toxin ChpB - none -
fig|6666666.229900.peg.1136 CDS AJME02000054.1 5999 5748 -2 - 252 hypothetical protein - none -
fig|6666666.229900.peg.1137 CDS AJME02000054.1 7196 6144 -2 - 1053 Outer membrane protein P2 precursor (OMP P2) - none -
fig|6666666.229900.peg.1138 CDS AJME02000054.1 8600 7410 -2 - 1191 Cystathionine beta-lyase (EC 4.4.1.8) Methionine Biosynthesis
fig|6666666.229900.peg.1139 CDS AJME02000054.1 8855 9412 2 + 558 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229900.peg.1140 CDS AJME02000054.1 9938 10069 2 + 132 Chromosome partitioning ATPase in PFGI-1-like cluster, ParA-like - none -
fig|6666666.229900.peg.1141 CDS AJME02000056.1 355 5 -1 - 351 Mobile element protein - none -
fig|6666666.229900.peg.1142 CDS AJME02000058.1 94 327 1 + 234 Mobile element protein - none -
fig|6666666.229900.peg.1143 CDS AJME02000059.1 156 1235 3 + 1080 Selenide,water dikinase (EC 2.7.9.3) Selenocysteine metabolism;
tRNA modification Bacteria
fig|6666666.229900.peg.1144 CDS AJME02000059.1 1463 2533 2 + 1071 Putative ABC transporter of substrate X, ATP-binding subunit ABC transporter of unknown substrate X
fig|6666666.229900.peg.1145 CDS AJME02000059.1 2530 3399 1 + 870 Putative ABC transporter of substrate X, permease subunit I ABC transporter of unknown substrate X
fig|6666666.229900.peg.1146 CDS AJME02000059.1 3396 4247 3 + 852 Putative ABC transporter of substrate X, permease subunit II ABC transporter of unknown substrate X
fig|6666666.229900.peg.1147 CDS AJME02000059.1 4267 5358 1 + 1092 Possible ABC transporter, periplasmic substrate X binding protein precursor ABC transporter of unknown substrate X
fig|6666666.229900.peg.1148 CDS AJME02000059.1 7574 5745 -2 - 1830 Excinuclease ABC subunit C DNA repair, UvrABC system
fig|6666666.229900.peg.1149 CDS AJME02000059.1 8476 7703 -1 - 774 3-deoxy-manno-octulosonate cytidylyltransferase (EC 2.7.7.38) KDO2-Lipid A biosynthesis;
KDO2-Lipid A biosynthesis cluster 2
fig|6666666.229900.peg.1150 CDS AJME02000059.1 8657 8478 -2 - 180 FIG002473: Protein YcaR in KDO2-Lipid A biosynthesis cluster Broadly distributed proteins not in subsystems;
KDO2-Lipid A biosynthesis cluster 2
fig|6666666.229900.peg.1151 CDS AJME02000059.1 9653 8679 -2 - 975 Tetraacyldisaccharide 4@1-kinase (EC 2.7.1.130) KDO2-Lipid A biosynthesis;
KDO2-Lipid A biosynthesis cluster 2
fig|6666666.229900.peg.1152 CDS AJME02000059.1 11420 9672 -2 - 1749 Lipid A export ATP-binding/permease protein MsbA (EC 3.6.3.25) KDO2-Lipid A biosynthesis;
KDO2-Lipid A biosynthesis cluster 2
fig|6666666.229900.peg.1153 CDS AJME02000059.1 13896 11467 -3 - 2430 DNA internalization-related competence protein ComEC/Rec2 KDO2-Lipid A biosynthesis;
KDO2-Lipid A biosynthesis cluster 2
fig|6666666.229900.peg.1154 CDS AJME02000060.1 515 39 -2 - 477 hypothetical protein - none -
fig|6666666.229900.peg.1155 CDS AJME02000060.1 2283 571 -3 - 1713 hypothetical protein - none -
fig|6666666.229900.peg.1156 CDS AJME02000060.1 3133 2375 -1 - 759 rRNA small subunit methyltransferase J - none -
fig|6666666.229900.peg.1157 CDS AJME02000060.1 4232 3135 -2 - 1098 tRNA (Uracil54-C5-)-methyltransferase (EC 2.1.1.35) - none -
fig|6666666.229900.peg.1158 CDS AJME02000060.1 4631 4302 -2 - 330 Protein yifE - none -
fig|6666666.229900.peg.1159 CDS AJME02000060.1 5308 4691 -1 - 618 Periplasmic thiol:disulfide interchange protein DsbA Biogenesis of c-type cytochromes;
Periplasmic disulfide interchange
fig|6666666.229900.peg.1160 CDS AJME02000060.1 5593 5327 -1 - 267 Protein yihD - none -
fig|6666666.229900.peg.1161 CDS AJME02000060.1 5677 6261 1 + 585 Molybdopterin-guanine dinucleotide biosynthesis protein MobA Molybdenum cofactor biosynthesis;
ar-431-EC Molybdopterin-guanine dinucleotide biosynthesis
fig|6666666.229900.peg.1162 CDS AJME02000060.1 6360 6890 3 + 531 ATPases involved in chromosome partitioning - none -
fig|6666666.229900.peg.1163 CDS AJME02000060.1 7002 8531 3 + 1530 Fructose-specific phosphocarrier protein HPr (EC 2.7.1.69) / PTS system, fructose-specific IIA component (EC 2.7.1.69) Fructose utilization;
Fructose utilization
fig|6666666.229900.peg.1164 CDS AJME02000060.1 8534 9475 2 + 942 1-phosphofructokinase (EC 2.7.1.56) Fructose utilization
fig|6666666.229900.peg.1165 CDS AJME02000060.1 9480 11144 3 + 1665 PTS system, fructose-specific IIB component (EC 2.7.1.69) / PTS system, fructose-specific IIC component (EC 2.7.1.69) Fructose utilization;
Fructose utilization
fig|6666666.229900.peg.1166 CDS AJME02000060.1 11208 11444 3 + 237 hypothetical protein - none -
fig|6666666.229900.peg.1167 CDS AJME02000060.1 11503 11640 1 + 138 hypothetical protein - none -
fig|6666666.229900.peg.1168 CDS AJME02000060.1 12050 11649 -2 - 402 LysR family regulatory protein CidR Murein hydrolase regulation and cell death
fig|6666666.229900.peg.1169 CDS AJME02000060.1 12290 12616 2 + 327 NAD(P)H oxidoreductase YRKL (EC 1.6.99.-) @ Putative NADPH-quinone reductase (modulator of drug activity B) @ Flavodoxin 2 Flavodoxin;
Flavodoxin
fig|6666666.229900.peg.1170 CDS AJME02000060.1 12769 13035 1 + 267 hypothetical protein - none -
fig|6666666.229900.peg.1171 CDS AJME02000060.1 14941 14312 -1 - 630 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) - none -
fig|6666666.229900.peg.1172 CDS AJME02000061.1 1002 508 -3 - 495 Protein yfbU - none -
fig|6666666.229900.peg.1173 CDS AJME02000061.1 1796 1020 -2 - 777 Nucleoside ABC transporter, periplasmic nucleoside-binding protein - none -
fig|6666666.229900.peg.1174 CDS AJME02000061.1 3445 1862 -1 - 1584 Nickel ABC transporter, periplasmic nickel-binding protein NikA (TC 3.A.1.5.3) Transport of Nickel and Cobalt
fig|6666666.229900.peg.1175 CDS AJME02000061.1 4842 3511 -3 - 1332 ATP-dependent hsl protease ATP-binding subunit HslU Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229900.peg.1176 CDS AJME02000061.1 5390 4863 -2 - 528 ATP-dependent protease HslV (EC 3.4.25.-) Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229900.peg.1177 CDS AJME02000061.1 5605 6312 1 + 708 NMN phosphatase (EC 3.1.3.5); Class B acid phosphatase precursor (EC 3.1.3.2) NAD and NADP cofactor biosynthesis global
fig|6666666.229900.peg.1178 CDS AJME02000061.1 7034 6801 -2 - 234 hypothetical protein - none -
fig|6666666.229900.peg.1179 CDS AJME02000061.1 8580 7336 -3 - 1245 Tryptophan-specific transport protein - none -
fig|6666666.229900.peg.1180 CDS AJME02000061.1 8743 9270 1 + 528 Inorganic pyrophosphatase (EC 3.6.1.1) Phosphate metabolism
fig|6666666.229900.peg.1181 CDS AJME02000061.1 9347 10120 2 + 774 Zn-dependent protease with chaperone function - none -
fig|6666666.229900.peg.1182 CDS AJME02000061.1 10813 10208 -1 - 606 Ferric siderophore transport system, periplasmic binding protein TonB Hemin transport system;
Ton and Tol transport systems
fig|6666666.229900.peg.1183 CDS AJME02000061.1 11416 10970 -1 - 447 Biopolymer transport protein ExbD/TolR Ton and Tol transport systems
fig|6666666.229900.peg.1184 CDS AJME02000061.1 11890 11420 -1 - 471 Ferric siderophore transport system, biopolymer transport protein ExbB Ton and Tol transport systems
fig|6666666.229900.peg.1185 CDS AJME02000061.1 13327 12065 -1 - 1263 Magnesium and cobalt efflux protein CorC CBSS-56780.10.peg.1536;
Copper homeostasis: copper tolerance;
Glycyl-tRNA synthetase containing cluster;
Magnesium transport;
tRNA-methylthiotransferase containing cluster
fig|6666666.229900.peg.1186 CDS AJME02000061.1 14196 13402 -3 - 795 FIG001154: CcsA-related protein - none -
fig|6666666.229900.peg.1187 CDS AJME02000061.1 14350 15729 1 + 1380 Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1) Bacterial signal recognition particle (SRP);
Universal GTPases
fig|6666666.229900.peg.1188 CDS AJME02000061.1 16016 15882 -2 - 135 hypothetical protein - none -
fig|6666666.229900.peg.1189 CDS AJME02000061.1 17199 16369 -3 - 831 S-formylglutathione hydrolase (EC 3.1.2.12) Glutathione-dependent pathway of formaldehyde detoxification
fig|6666666.229900.peg.1190 CDS AJME02000061.1 18338 17214 -2 - 1125 S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) Glutathione-dependent pathway of formaldehyde detoxification
fig|6666666.229900.peg.1191 CDS AJME02000061.1 18476 18748 2 + 273 Transcriptional regulator, MerR family Cobalt-zinc-cadmium resistance
fig|6666666.229900.peg.1192 CDS AJME02000061.1 18752 18883 2 + 132 Transcriptional regulator, MerR family Cobalt-zinc-cadmium resistance
fig|6666666.229900.peg.1193 CDS AJME02000061.1 19746 18997 -3 - 750 Sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140) - none -
fig|6666666.229900.peg.1194 CDS AJME02000061.1 19999 19739 -1 - 261 hypothetical protein - none -
fig|6666666.229900.peg.1195 CDS AJME02000061.1 21335 19968 -2 - 1368 Adenylosuccinate lyase (EC 4.3.2.2) CBSS-354.1.peg.876;
Purine conversions
fig|6666666.229900.peg.1196 CDS AJME02000061.1 21970 21359 -1 - 612 FIG002903: a protein of unknown function perhaps involved in purine metabolism CBSS-354.1.peg.876
fig|6666666.229900.peg.1197 CDS AJME02000061.1 22083 22493 3 + 411 Copper metallochaperone, bacterial analog of Cox17 protein Biogenesis of cytochrome c oxidases
fig|6666666.229900.peg.1198 CDS AJME02000061.1 22632 23168 3 + 537 Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR De Novo Pyrimidine Synthesis;
De Novo Pyrimidine Synthesis;
pyrimidine conversions
fig|6666666.229900.peg.1199 CDS AJME02000061.1 23233 24165 1 + 933 Survival protein SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA) (EC 5.2.1.8) Lipopolysaccharide assembly;
Peptidyl-prolyl cis-trans isomerase;
Periplasmic Stress Response
fig|6666666.229900.peg.1200 CDS AJME02000061.1 24243 25106 3 + 864 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase (EC 2.1.1.182) RNA methylation;
Ribosome biogenesis bacterial
fig|6666666.229900.peg.1201 CDS AJME02000061.1 25122 25949 3 + 828 Bis(5@1-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) - none -
fig|6666666.229900.peg.1202 CDS AJME02000061.1 26040 26459 3 + 420 nucleotidyltransferase substrate binding protein, HI0074 family - none -
fig|6666666.229900.peg.1203 CDS AJME02000061.1 26443 26736 1 + 294 nucleotidyltransferase - none -
fig|6666666.229900.peg.1204 CDS AJME02000061.1 26764 27321 1 + 558 FIG00696423: hypothetical protein - none -
fig|6666666.229900.peg.1205 CDS AJME02000061.1 27276 27392 3 + 117 hypothetical protein - none -
fig|6666666.229900.peg.1206 CDS AJME02000061.1 27364 27534 1 + 171 hypothetical protein - none -
fig|6666666.229900.peg.1207 CDS AJME02000061.1 27512 30100 2 + 2589 Leucyl-tRNA synthetase (EC 6.1.1.4) CBSS-208964.1.peg.3988;
tRNA aminoacylation, Leu
fig|6666666.229900.peg.1208 CDS AJME02000061.1 30253 30125 -1 - 129 hypothetical protein - none -
fig|6666666.229900.peg.1209 CDS AJME02000061.1 30242 30745 2 + 504 LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B) CBSS-208964.1.peg.3988;
KDO2-Lipid A biosynthesis;
Lipopolysaccharide assembly
fig|6666666.229900.peg.1210 CDS AJME02000061.1 30745 31779 1 + 1035 DNA polymerase III delta subunit (EC 2.7.7.7) CBSS-208964.1.peg.3988
fig|6666666.229900.peg.1211 CDS AJME02000061.1 32675 32271 -2 - 405 Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-) Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229900.peg.1212 CDS AJME02000061.1 35451 32752 -3 - 2700 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) - none -
fig|6666666.229900.peg.1213 CDS AJME02000061.1 35787 35524 -3 - 264 hypothetical protein - none -
fig|6666666.229900.peg.1214 CDS AJME02000061.1 35966 35838 -2 - 129 hypothetical protein - none -
fig|6666666.229900.peg.1215 CDS AJME02000061.1 35933 36244 2 + 312 Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives DNA replication cluster 1
fig|6666666.229900.peg.1216 CDS AJME02000061.1 36272 36775 2 + 504 Mercuric resistance operon regulatory protein - none -
fig|6666666.229900.peg.1217 CDS AJME02000061.1 39675 36844 -3 - 2832 Excinuclease ABC subunit A DNA repair, UvrABC system
fig|6666666.229900.peg.1218 CDS AJME02000061.1 39759 40331 3 + 573 Single-stranded DNA-binding protein DNA repair, bacterial;
DNA repair, bacterial RecFOR pathway
fig|6666666.229900.peg.1219 CDS AJME02000061.1 41087 40521 -2 - 567 RND multidrug efflux transporter; Acriflavin resistance protein Multidrug Resistance Efflux Pumps
fig|6666666.229900.peg.1220 CDS AJME02000062.1 390 187 -3 - 204 Osmotically inducible lipoprotein B precursor Osmotic stress cluster
fig|6666666.229900.peg.1221 CDS AJME02000062.1 1409 477 -2 - 933 Biotin operon repressor / Biotin-protein ligase (EC 6.3.4.15) Biotin biosynthesis;
Biotin biosynthesis;
Biotin synthesis cluster;
Biotin synthesis cluster
fig|6666666.229900.peg.1222 CDS AJME02000062.1 1551 3017 3 + 1467 Inosine-5@1-monophosphate dehydrogenase (EC 1.1.1.205) Purine conversions;
Purine salvage cluster
fig|6666666.229900.peg.1223 CDS AJME02000062.1 3319 3492 1 + 174 hypothetical protein - none -
fig|6666666.229900.peg.1224 CDS AJME02000062.1 4174 3725 -1 - 450 ImpA - none -
fig|6666666.229900.peg.1225 CDS AJME02000062.1 4372 4536 1 + 165 hypothetical protein - none -
fig|6666666.229900.peg.1226 CDS AJME02000063.1 2011 80 -1 - 1932 Threonyl-tRNA synthetase (EC 6.1.1.3) tRNA aminoacylation, Thr
fig|6666666.229900.peg.1227 CDS AJME02000063.1 2251 3126 1 + 876 Ribulosamine/erythrulosamine 3-kinase potentially involved in protein deglycation Protein deglycation
fig|6666666.229900.peg.1228 CDS AJME02000063.1 3672 3394 -3 - 279 Ethidium bromide-methyl viologen resistance protein EmrE - none -
fig|6666666.229900.peg.1229 CDS AJME02000063.1 4834 3890 -1 - 945 Hydroxypyruvate reductase (EC 1.1.1.81) Glycerate metabolism;
Glycolate, glyoxylate interconversions
fig|6666666.229900.peg.1230 CDS AJME02000063.1 5556 4990 -3 - 567 Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Folate Biosynthesis;
Tryptophan synthesis
fig|6666666.229900.peg.1231 CDS AJME02000063.1 5659 6633 1 + 975 Para-aminobenzoate synthase, aminase component (EC 2.6.1.85) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Folate Biosynthesis;
Tryptophan synthesis
fig|6666666.229900.peg.1232 CDS AJME02000063.1 6636 7226 3 + 591 Aminodeoxychorismate lyase (EC 4.1.3.38) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Folate Biosynthesis;
Tryptophan synthesis
fig|6666666.229900.peg.1233 CDS AJME02000064.1 331 215 -1 - 117 hypothetical protein - none -
fig|6666666.229900.peg.1234 CDS AJME02000064.1 1012 353 -1 - 660 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses;
Ribosome biogenesis bacterial;
tRNA modification Bacteria
fig|6666666.229900.peg.1235 CDS AJME02000064.1 1393 2082 1 + 690 Ribosyl nicotinamide transporter, PnuC-like NAD and NADP cofactor biosynthesis global
fig|6666666.229900.peg.1236 CDS AJME02000064.1 2855 2157 -2 - 699 tRNA (adenine37-N(6))-methyltransferase TrmN6 (EC 2.1.1.223) RNA methylation
fig|6666666.229900.peg.1237 CDS AJME02000064.1 2955 4286 3 + 1332 ATP-dependent RNA helicase SrmB - none -
fig|6666666.229900.peg.1238 CDS AJME02000064.1 4692 5996 3 + 1305 Predicted ATPase (AAA+ superfamily) - none -
fig|6666666.229900.peg.1239 CDS AJME02000065.1 122 634 2 + 513 Peptide deformylase (EC 3.5.1.88) Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Translation termination factors bacterial
fig|6666666.229900.peg.1240 CDS AJME02000065.1 700 1656 1 + 957 Methionyl-tRNA formyltransferase (EC 2.1.2.9) Conserved gene cluster associated with Met-tRNA formyltransferase;
Translation initiation factors bacterial
fig|6666666.229900.peg.1241 CDS AJME02000069.1 1016 81 -2 - 936 Cell division protein FtsX Bacterial Cell Division
fig|6666666.229900.peg.1242 CDS AJME02000069.1 1675 1025 -1 - 651 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) Bacterial Cell Division
fig|6666666.229900.peg.1243 CDS AJME02000069.1 3090 1714 -3 - 1377 Signal recognition particle receptor protein FtsY (=alpha subunit) (TC 3.A.5.1.1) Bacterial Cell Division;
Bacterial signal recognition particle (SRP);
Universal GTPases
fig|6666666.229900.peg.1244 CDS AJME02000069.1 3178 3762 1 + 585 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) CBSS-266117.6.peg.1260;
CBSS-269801.1.peg.1715;
RNA methylation
fig|6666666.229900.peg.1245 CDS AJME02000069.1 4061 5026 2 + 966 PTS system, mannose-specific IIA component (EC 2.7.1.69) / PTS system, mannose-specific IIB component (EC 2.7.1.69) Mannose Metabolism;
Mannose Metabolism;
Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229900.peg.1246 CDS AJME02000069.1 5044 5841 1 + 798 PTS system, mannose-specific IIC component (EC 2.7.1.69) Mannose Metabolism;
Sialic Acid Metabolism
fig|6666666.229900.peg.1247 CDS AJME02000069.1 5855 6691 2 + 837 PTS system, mannose-specific IID component (EC 2.7.1.69) Mannose Metabolism;
Sialic Acid Metabolism
fig|6666666.229900.peg.1248 CDS AJME02000069.1 6801 7781 3 + 981 Cof protein - none -
fig|6666666.229900.peg.1249 CDS AJME02000069.1 7842 7976 3 + 135 Cof protein - none -
fig|6666666.229900.peg.1250 CDS AJME02000069.1 8267 9517 2 + 1251 Na+ dependent nucleoside transporter NupC Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.229900.peg.1251 CDS AJME02000069.1 10323 10466 3 + 144 hypothetical protein - none -
fig|6666666.229900.peg.1252 CDS AJME02000069.1 10608 12995 3 + 2388 Biofilm PGA outer membrane secretin PgaA Biofilm Adhesin Biosynthesis
fig|6666666.229900.peg.1253 CDS AJME02000069.1 13011 14927 3 + 1917 Biofilm PGA synthesis deacetylase PgaB (EC 3.-) Biofilm Adhesin Biosynthesis
fig|6666666.229900.peg.1254 CDS AJME02000069.1 14936 16171 2 + 1236 Biofilm PGA synthesis N-glycosyltransferase PgaC (EC 2.4.-.-) Biofilm Adhesin Biosynthesis
fig|6666666.229900.peg.1255 CDS AJME02000069.1 16174 16467 1 + 294 AagD - none -
fig|6666666.229900.peg.1256 CDS AJME02000069.1 16557 16435 -3 - 123 hypothetical protein - none -
fig|6666666.229900.peg.1257 CDS AJME02000069.1 17910 16585 -3 - 1326 Hexose phosphate uptake regulatory protein UhpC - none -
fig|6666666.229900.peg.1258 CDS AJME02000069.1 18081 18713 3 + 633 Pyridoxamine 5@1-phosphate oxidase (EC 1.4.3.5) Pyridoxin (Vitamin B6) Biosynthesis
fig|6666666.229900.peg.1259 CDS AJME02000069.1 18805 18665 -1 - 141 hypothetical protein - none -
fig|6666666.229900.peg.1260 CDS AJME02000069.1 18908 19162 2 + 255 hypothetical protein - none -
fig|6666666.229900.peg.1261 CDS AJME02000070.1 2152 1085 -1 - 1068 Probable phospholipase protein - none -
fig|6666666.229900.peg.1262 CDS AJME02000070.1 3288 2149 -3 - 1140 Probable phospholipase protein - none -
fig|6666666.229900.peg.1263 CDS AJME02000071.1 296 48 -2 - 249 Mobile element protein - none -
fig|6666666.229900.peg.1264 CDS AJME02000071.1 523 338 -1 - 186 Mobile element protein - none -
fig|6666666.229900.peg.1265 CDS AJME02000071.1 1238 1693 2 + 456 Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229900.peg.1266 CDS AJME02000071.1 1662 2465 3 + 804 Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229900.peg.1267 CDS AJME02000071.1 2538 3086 3 + 549 ABC transporter ATP-binding protein - none -
fig|6666666.229900.peg.1268 CDS AJME02000071.1 3083 3943 2 + 861 Molybdenum transport system protein ModD Molybdenum cofactor biosynthesis
fig|6666666.229900.peg.1269 CDS AJME02000071.1 4240 5688 1 + 1449 TldD protein, part of TldE/TldD proteolytic complex CBSS-354.1.peg.2917;
Putative TldE-TldD proteolytic complex
fig|6666666.229900.peg.1270 CDS AJME02000071.1 5754 11525 3 + 5772 FIG00904191: hypothetical protein - none -
fig|6666666.229900.peg.1271 CDS AJME02000071.1 11965 12708 1 + 744 Putative membrane protein YeiH - none -
fig|6666666.229900.peg.1272 CDS AJME02000071.1 12876 15185 3 + 2310 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) DNA uptake cluster;
Peptidoglycan Biosynthesis;
Type IV pilus
fig|6666666.229900.peg.1273 CDS AJME02000072.1 296 427 2 + 132 hypothetical protein - none -
fig|6666666.229900.peg.1274 CDS AJME02000072.1 574 798 1 + 225 Twin-arginine translocation protein TatA Cluster-based Subsystem Grouping Hypotheticals - perhaps Proteosome Related;
Twin-arginine translocation system
fig|6666666.229900.peg.1275 CDS AJME02000072.1 802 1464 1 + 663 Twin-arginine translocation protein TatB Twin-arginine translocation system
fig|6666666.229900.peg.1276 CDS AJME02000072.1 1502 2266 2 + 765 Twin-arginine translocation protein TatC Cluster-based Subsystem Grouping Hypotheticals - perhaps Proteosome Related;
Twin-arginine translocation system
fig|6666666.229900.peg.1277 CDS AJME02000072.1 2287 3309 1 + 1023 Porphobilinogen synthase (EC 4.2.1.24) Heme and Siroheme Biosynthesis
fig|6666666.229900.peg.1278 CDS AJME02000072.1 3597 3313 -3 - 285 Mobile element protein - none -
fig|6666666.229900.peg.1279 CDS AJME02000073.1 245 985 2 + 741 FIG00698611: hypothetical protein - none -
fig|6666666.229900.peg.1280 CDS AJME02000073.1 1863 1141 -3 - 723 Malate dehydrogenase (EC 1.1.1.37) Serine-glyoxylate cycle;
TCA Cycle
fig|6666666.229900.peg.1281 CDS AJME02000073.1 2286 2164 -3 - 123 hypothetical protein - none -
fig|6666666.229900.peg.1282 CDS AJME02000073.1 2311 2778 1 + 468 Arginine pathway regulatory protein ArgR, repressor of arg regulon Arginine Deiminase Pathway;
Arginine and Ornithine Degradation
fig|6666666.229900.peg.1283 CDS AJME02000073.1 2802 3689 3 + 888 Cell division inhibitor CBSS-83333.1.peg.946;
Persister Cells
fig|6666666.229900.peg.1284 CDS AJME02000073.1 3880 4461 1 + 582 Electron transport complex protein RnfA Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229900.peg.1285 CDS AJME02000073.1 4461 5051 3 + 591 Electron transport complex protein RnfB Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229900.peg.1286 CDS AJME02000073.1 5052 7424 3 + 2373 Electron transport complex protein RnfC Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229900.peg.1287 CDS AJME02000073.1 7435 8514 1 + 1080 Electron transport complex protein RnfD Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229900.peg.1288 CDS AJME02000073.1 8521 9141 1 + 621 Electron transport complex protein RnfG Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229900.peg.1289 CDS AJME02000073.1 9134 9919 2 + 786 Electron transport complex protein RnfE Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229900.peg.1290 CDS AJME02000073.1 10066 10701 1 + 636 Endonuclease III (EC 4.2.99.18) DNA Repair Base Excision
fig|6666666.229900.peg.1291 CDS AJME02000073.1 10726 12099 1 + 1374 sodium-dependent transporter - none -
fig|6666666.229900.peg.1292 CDS AJME02000073.1 13279 12494 -1 - 786 Zinc ABC transporter, inner membrane permease protein ZnuB - none -
fig|6666666.229900.peg.1293 CDS AJME02000073.1 14064 13291 -3 - 774 Zinc ABC transporter, ATP-binding protein ZnuC - none -
fig|6666666.229900.peg.1294 CDS AJME02000073.1 14252 15784 2 + 1533 Cell wall endopeptidase, family M23/M37 Glutaredoxins
fig|6666666.229900.peg.1295 CDS AJME02000073.1 16650 15892 -3 - 759 Iron(III) dicitrate transport ATP-binding protein FecE (TC 3.A.1.14.1) - none -
fig|6666666.229900.peg.1296 CDS AJME02000073.1 17585 16662 -2 - 924 Ferric vibriobactin, enterobactin transport system, permease protein VctG (TC 3.A.1.14.6) - none -
fig|6666666.229900.peg.1297 CDS AJME02000073.1 18558 17593 -3 - 966 Ferric anguibactin transport system permease protein fatD - none -
fig|6666666.229900.peg.1298 CDS AJME02000073.1 19517 18618 -2 - 900 Iron compound ABC uptake transporter substrate-binding protein PiuA - none -
fig|6666666.229900.peg.1299 CDS AJME02000073.1 19747 21723 1 + 1977 2@1,3@1-cyclic-nucleotide 2@1-phosphodiesterase (EC 3.1.4.16) Purine conversions;
pyrimidine conversions
fig|6666666.229900.peg.1300 CDS AJME02000073.1 22836 21919 -3 - 918 formate dehydrogenase formation protein FdhE Formate hydrogenase
fig|6666666.229900.peg.1301 CDS AJME02000073.1 23208 23624 3 + 417 Protein ygiW precursor - none -
fig|6666666.229900.peg.1302 CDS AJME02000073.1 23762 24007 2 + 246 Two-component system response regulator QseB Orphan regulatory proteins
fig|6666666.229900.peg.1303 CDS AJME02000073.1 23976 24422 3 + 447 Two-component system response regulator QseB Orphan regulatory proteins
fig|6666666.229900.peg.1304 CDS AJME02000073.1 24409 25785 1 + 1377 Sensory histidine kinase QseC Orphan regulatory proteins
fig|6666666.229900.peg.1305 CDS AJME02000073.1 27680 25911 -2 - 1770 Gamma-glutamyltranspeptidase (EC 2.3.2.2) Glutathione: Biosynthesis and gamma-glutamyl cycle
fig|6666666.229900.peg.1306 CDS AJME02000073.1 28158 27913 -3 - 246 FIG00696862: hypothetical protein - none -
fig|6666666.229900.peg.1307 CDS AJME02000073.1 29686 28349 -1 - 1338 Argininosuccinate synthase (EC 6.3.4.5) - none -
fig|6666666.229900.peg.1308 CDS AJME02000073.1 30608 29781 -2 - 828 Nucleoside-diphosphate-sugar epimerases - none -
fig|6666666.229900.peg.1309 CDS AJME02000073.1 30895 30779 -1 - 117 hypothetical protein - none -
fig|6666666.229900.peg.1310 CDS AJME02000073.1 30965 32548 2 + 1584 Peptide chain release factor 3 Translation termination factors bacterial
fig|6666666.229900.peg.1311 CDS AJME02000073.1 32735 33085 2 + 351 YPPCP.09C homologue - none -
fig|6666666.229900.peg.1312 CDS AJME02000073.1 33082 33381 1 + 300 Putative transcriptional regulator - none -
fig|6666666.229900.peg.1313 CDS AJME02000073.1 36350 33417 -2 - 2934 Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42) Ammonia assimilation;
CBSS-316057.3.peg.3521
fig|6666666.229900.peg.1314 CDS AJME02000073.1 36550 37938 1 + 1389 CRISPR-associated helicase Cas3 CRISPRs
fig|6666666.229900.peg.1315 CDS AJME02000073.1 37952 39016 2 + 1065 CRISPR-associated helicase Cas3 CRISPRs
fig|6666666.229900.peg.1316 CDS AJME02000073.1 39025 39804 1 + 780 CRISPR-associated protein, Cas5d family CRISPRs
fig|6666666.229900.peg.1317 CDS AJME02000073.1 39801 41834 3 + 2034 CRISPR-associated protein, Csd1 family CRISPRs
fig|6666666.229900.peg.1318 CDS AJME02000073.1 41856 42749 3 + 894 CRISPR-associated protein, Csd2 family CRISPRs
fig|6666666.229900.peg.1319 CDS AJME02000073.1 42925 43572 1 + 648 CRISPR-associated RecB family exonuclease Cas4 / CRISPR-associated protein Cas1 CRISPRs
fig|6666666.229900.peg.1320 CDS AJME02000073.1 43635 45458 3 + 1824 hypothetical protein - none -
fig|6666666.229900.peg.1321 CDS AJME02000073.1 45527 46540 2 + 1014 CRISPR-associated protein Cas1 CRISPRs
fig|6666666.229900.peg.1322 CDS AJME02000073.1 46544 46837 2 + 294 CRISPR-associated protein Cas2 CRISPRs
fig|6666666.229900.peg.1323 CDS AJME02000073.1 49744 47468 -1 - 2277 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) Methionine Biosynthesis
fig|6666666.229900.peg.1324 CDS AJME02000073.1 50035 50967 1 + 933 Transcriptional activator MetR LysR-family proteins in Escherichia coli;
LysR-family proteins in Salmonella enterica Typhimurium;
Methionine Biosynthesis
fig|6666666.229900.peg.1325 CDS AJME02000073.1 50972 51700 2 + 729 Branched-chain amino acid transport protein AzlC - none -
fig|6666666.229900.peg.1326 CDS AJME02000073.1 51701 52033 2 + 333 Branched-chain amino acid transport protein azlD - none -
fig|6666666.229900.peg.1327 CDS AJME02000073.1 54874 52100 -1 - 2775 Probable zinc protease pqqL (EC 3.4.99.-) - none -
fig|6666666.229900.peg.1328 CDS AJME02000073.1 57318 54952 -3 - 2367 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229900.peg.1329 CDS AJME02000073.1 57611 58504 2 + 894 Membrane protein LAPB - none -
fig|6666666.229900.peg.1330 CDS AJME02000073.1 58497 59174 3 + 678 Cytidylate kinase (EC 2.7.4.25) pyrimidine conversions
fig|6666666.229900.peg.1331 CDS AJME02000073.1 59272 60918 1 + 1647 SSU ribosomal protein S1p Cell division-ribosomal stress proteins cluster;
Ribosome SSU bacterial
fig|6666666.229900.peg.1332 CDS AJME02000073.1 60980 61267 2 + 288 Integration host factor beta subunit DNA structural proteins, bacterial
fig|6666666.229900.peg.1333 CDS AJME02000073.1 61366 61662 1 + 297 Inner membrane protein yciS - none -
fig|6666666.229900.peg.1334 CDS AJME02000073.1 61716 62852 3 + 1137 Heat shock (predicted periplasmic) protein YciM, precursor Osmotic stress cluster
fig|6666666.229900.peg.1335 CDS AJME02000073.1 62882 63574 2 + 693 Orotidine 5@1-phosphate decarboxylase (EC 4.1.1.23) De Novo Pyrimidine Synthesis;
Riboflavin synthesis cluster
fig|6666666.229900.peg.1336 CDS AJME02000073.1 63580 63897 1 + 318 Translation initiation factor SUI1-related protein Translation initiation factors bacterial
fig|6666666.229900.peg.1337 CDS AJME02000073.1 64281 63931 -3 - 351 FIG00782386: hypothetical protein - none -
fig|6666666.229900.peg.1338 CDS AJME02000073.1 67012 64349 -1 - 2664 DNA gyrase subunit A (EC 5.99.1.3) Cell Division Subsystem including YidCD;
DNA gyrase subunits;
DNA replication cluster 1;
DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.229900.peg.1339 CDS AJME02000073.1 67620 67180 -3 - 441 Ferric uptake regulation protein FUR Bacterial RNA-metabolizing Zn-dependent hydrolases;
Oxidative stress
fig|6666666.229900.peg.1340 CDS AJME02000073.1 68163 67639 -3 - 525 Flavodoxin 1 Flavodoxin
fig|6666666.229900.peg.1341 CDS AJME02000073.1 69383 68583 -2 - 801 Esterase ybfF (EC 3.1.-.-) - none -
fig|6666666.229900.peg.1342 CDS AJME02000073.1 69470 70087 2 + 618 SeqA protein, negative modulator of initiation of replication - none -
fig|6666666.229900.peg.1343 CDS AJME02000073.1 70093 71508 1 + 1416 O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229900.peg.1344 CDS AJME02000073.1 71517 74840 3 + 3324 Potassium efflux system KefA protein / Small-conductance mechanosensitive channel Potassium homeostasis
fig|6666666.229900.peg.1345 CDS AJME02000073.1 74862 75935 3 + 1074 Chorismate synthase (EC 4.2.3.5) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229900.peg.1346 CDS AJME02000073.1 75956 76828 2 + 873 Murein endopeptidase - none -
fig|6666666.229900.peg.1347 CDS AJME02000073.1 76832 77599 2 + 768 Putative membrane protein YfcA - none -
fig|6666666.229900.peg.1348 CDS AJME02000073.1 77715 78671 3 + 957 Lipid A biosynthesis (KDO) 2-(lauroyl)-lipid IVA acyltransferase (EC 2.3.1.-) KDO2-Lipid A biosynthesis
fig|6666666.229900.peg.1349 CDS AJME02000073.1 78693 79304 3 + 612 Adenine phosphoribosyltransferase (EC 2.4.2.7) Purine conversions;
cAMP signaling in bacteria
fig|6666666.229900.peg.1350 CDS AJME02000073.1 79337 81382 2 + 2046 DNA polymerase III subunits gamma and tau (EC 2.7.7.7) DNA processing cluster
fig|6666666.229900.peg.1351 CDS AJME02000073.1 81385 82275 1 + 891 hypothetical protein - none -
fig|6666666.229900.peg.1352 CDS AJME02000073.1 82419 83372 3 + 954 Glycosyltransferase - none -
fig|6666666.229900.peg.1353 CDS AJME02000073.1 84025 84897 1 + 873 hypothetical protein - none -
fig|6666666.229900.peg.1354 CDS AJME02000073.1 85292 84939 -2 - 354 Putative translation initiation inhibitor, yjgF family - none -
fig|6666666.229900.peg.1355 CDS AJME02000073.1 85433 86110 2 + 678 FIG00904286: hypothetical protein - none -
fig|6666666.229900.peg.1356 CDS AJME02000073.1 86116 86826 1 + 711 hypothetical protein - none -
fig|6666666.229900.peg.1357 CDS AJME02000073.1 88493 86961 -2 - 1533 Na+/H+ antiporter - none -
fig|6666666.229900.peg.1358 CDS AJME02000073.1 88934 89332 2 + 399 DNA-binding protein H-NS - none -
fig|6666666.229900.peg.1359 CDS AJME02000073.1 89369 90238 2 + 870 Formyltetrahydrofolate deformylase (EC 3.5.1.10) 5-FCL-like protein;
One-carbon metabolism by tetrahydropterines
fig|6666666.229900.peg.1360 CDS AJME02000073.1 90373 91002 1 + 630 Cell division protein FtsJ / Ribosomal RNA large subunit methyltransferase E (EC 2.1.1.-) ## LSU rRNA Um2552 Bacterial Cell Division;
RNA methylation
fig|6666666.229900.peg.1361 CDS AJME02000073.1 91109 93061 2 + 1953 Cell division protein FtsH (EC 3.4.24.-) Bacterial Cell Division;
Cell division-ribosomal stress proteins cluster;
Folate biosynthesis cluster
fig|6666666.229900.peg.1362 CDS AJME02000073.1 93158 93694 2 + 537 Putative transporting ATPase - none -
fig|6666666.229900.peg.1363 CDS AJME02000073.1 94494 93820 -3 - 675 Ferric iron ABC transporter, ATP-binding protein Iron acquisition in Streptococcus
fig|6666666.229900.peg.1364 CDS AJME02000073.1 94877 94488 -2 - 390 Ferric iron ABC transporter, ATP-binding protein Iron acquisition in Streptococcus
fig|6666666.229900.peg.1365 CDS AJME02000073.1 96593 94899 -2 - 1695 Ferric iron ABC transporter, permease protein Iron acquisition in Streptococcus
fig|6666666.229900.peg.1366 CDS AJME02000073.1 97675 96596 -1 - 1080 Thiamin ABC transporter, ATPase component Thiamin biosynthesis
fig|6666666.229900.peg.1367 CDS AJME02000073.1 98695 97844 -1 - 852 ABC-type Fe3+ transport system, periplasmic component - none -
fig|6666666.229900.peg.1368 CDS AJME02000073.1 99069 100319 3 + 1251 Phosphoglycerate transport regulatory protein PgtC Phosphoglycerate transport system
fig|6666666.229900.peg.1369 CDS AJME02000073.1 100316 102298 2 + 1983 Phosphoglycerate transport system sensor protein PgtB (EC 2.7.3.-) Phosphoglycerate transport system
fig|6666666.229900.peg.1370 CDS AJME02000073.1 102291 102653 3 + 363 Phosphoglycerate transport system transcriptional regulatory protein PgtA Phosphoglycerate transport system
fig|6666666.229900.peg.1371 CDS AJME02000073.1 102668 103540 2 + 873 Phosphoglycerate transport system transcriptional regulatory protein PgtA Phosphoglycerate transport system
fig|6666666.229900.peg.1372 CDS AJME02000073.1 104431 103592 -1 - 840 NADPH dependent preQ0 reductase (EC 1.7.1.13) - none -
fig|6666666.229900.peg.1373 CDS AJME02000073.1 105222 104440 -3 - 783 Zn-ribbon-containing, possibly nucleic-acid-binding protein - none -
fig|6666666.229900.peg.1374 CDS AJME02000073.1 105330 105644 3 + 315 Hypothetical protein YqcC (clustered with tRNA pseudouridine synthase C) - none -
fig|6666666.229900.peg.1375 CDS AJME02000073.1 105641 106354 2 + 714 tRNA pseudouridine synthase C (EC 4.2.1.70) RNA pseudouridine syntheses;
tRNA modification Bacteria
fig|6666666.229900.peg.1376 CDS AJME02000073.1 106405 106569 1 + 165 hypothetical protein - none -
fig|6666666.229900.peg.1377 CDS AJME02000073.1 106760 106969 2 + 210 Cold shock protein CspD Cold shock, CspA family of proteins
fig|6666666.229900.peg.1378 CDS AJME02000073.1 107481 107035 -3 - 447 Macrodomain Ter protein YcbG - none -
fig|6666666.229900.peg.1379 CDS AJME02000073.1 107628 109412 3 + 1785 ATP-dependent protease La (EC 3.4.21.53) Type II Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229900.peg.1380 CDS AJME02000073.1 109555 110085 1 + 531 3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabA form (EC 4.2.1.59) Fatty Acid Biosynthesis FASII
fig|6666666.229900.peg.1381 CDS AJME02000073.1 110509 110865 1 + 357 DsrE-related protein - none -
fig|6666666.229900.peg.1382 CDS AJME02000073.1 110936 114601 2 + 3666 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) DNA repair, bacterial RecBCD pathway
fig|6666666.229900.peg.1383 CDS AJME02000073.1 114601 116580 1 + 1980 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) DNA repair, bacterial RecBCD pathway
fig|6666666.229900.peg.1384 CDS AJME02000073.1 116593 117189 1 + 597 hypothetical protein - none -
fig|6666666.229900.peg.1385 CDS AJME02000073.1 117431 117859 2 + 429 LSU ribosomal protein L13p (L13Ae) - none -
fig|6666666.229900.peg.1386 CDS AJME02000073.1 117876 118268 3 + 393 SSU ribosomal protein S9p (S16e) Ribosome SSU bacterial
fig|6666666.229900.peg.1387 CDS AJME02000073.1 118429 119214 1 + 786 tRNA pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229900.peg.1388 CDS AJME02000073.1 119373 119227 -3 - 147 RelE/StbE replicon stabilization toxin Toxin-antitoxin replicon stabilization systems
fig|6666666.229900.peg.1389 CDS AJME02000073.1 119509 119357 -1 - 153 StbE replicon stabilization toxin - none -
fig|6666666.229900.peg.1390 CDS AJME02000073.1 119760 119506 -3 - 255 RelB/StbD replicon stabilization protein (antitoxin to RelE/StbE) Toxin-antitoxin replicon stabilization systems
fig|6666666.229900.peg.1391 CDS AJME02000073.1 121432 119975 -1 - 1458 2-oxoglutarate/malate translocator - none -
fig|6666666.229900.peg.1392 CDS AJME02000073.1 121662 122441 3 + 780 Protein of unknown function DUF419 - none -
fig|6666666.229900.peg.1393 CDS AJME02000073.1 124992 122512 -3 - 2481 Trimethylamine-N-oxide reductase (EC 1.6.6.9) - none -
fig|6666666.229900.peg.1394 CDS AJME02000073.1 126153 125053 -3 - 1101 Cytochrome c-type protein TorY - none -
fig|6666666.229900.peg.1395 CDS AJME02000073.1 126459 127916 3 + 1458 tRNA S(4)U 4-thiouridine synthase (former ThiI) / Rhodanese-like domain required for thiamine synthesis Thiamin biosynthesis;
Thiamin biosynthesis;
tRNA modification Bacteria;
tRNA modification Bacteria
fig|6666666.229900.peg.1396 CDS AJME02000073.1 127941 128072 3 + 132 hypothetical protein - none -
fig|6666666.229900.peg.1397 CDS AJME02000073.1 128703 128104 -3 - 600 Alpha-aspartyl dipeptidase Peptidase E (EC 3.4.13.21) Dipeptidases (EC 3.4.13.-)
fig|6666666.229900.peg.1398 CDS AJME02000073.1 128887 129879 1 + 993 Putative DNA-binding protein in cluster with Type I restriction-modification system Restriction-Modification System
fig|6666666.229900.peg.1399 CDS AJME02000076.1 216 374 3 + 159 Probable phospholipase protein - none -
fig|6666666.229900.peg.1400 CDS AJME02000076.1 413 2185 2 + 1773 Probable phospholipase protein - none -
fig|6666666.229900.peg.1401 CDS AJME02000078.1 857 42 -2 - 816 Peptide transport system ATP-binding protein SapF Peptide ABC transport system Sap
fig|6666666.229900.peg.1402 CDS AJME02000078.1 1913 861 -2 - 1053 Peptide transport system ATP-binding protein SapD Peptide ABC transport system Sap
fig|6666666.229900.peg.1403 CDS AJME02000078.1 2808 1921 -3 - 888 Peptide transport system permease protein SapC Peptide ABC transport system Sap
fig|6666666.229900.peg.1404 CDS AJME02000078.1 3682 2798 -1 - 885 Peptide transport system permease protein SapB Peptide ABC transport system Sap
fig|6666666.229900.peg.1405 CDS AJME02000078.1 5394 3763 -3 - 1632 Peptide transport periplasmic protein SapA Peptide ABC transport system Sap
fig|6666666.229900.peg.1406 CDS AJME02000078.1 5660 7075 2 + 1416 Conserved protein YcjX with nucleoside triphosphate hydrolase domain A conserved operon linked to TyrR and possibly involved in virulence
fig|6666666.229900.peg.1407 CDS AJME02000078.1 7088 8167 2 + 1080 Membrane protein YcjF A conserved operon linked to TyrR and possibly involved in virulence
fig|6666666.229900.peg.1408 CDS AJME02000078.1 8251 9210 1 + 960 Transcriptional repressor protein TyrR Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate);
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229900.peg.1409 CDS AJME02000078.1 9573 9265 -3 - 309 GTP-binding protein HflX Hfl operon;
Universal GTPases
fig|6666666.229900.peg.1410 CDS AJME02000078.1 9884 9588 -2 - 297 RNA-binding protein Hfq Hfl operon;
Polyadenylation bacterial
fig|6666666.229900.peg.1411 CDS AJME02000078.1 10948 10004 -1 - 945 tRNA dimethylallyltransferase (EC 2.5.1.75) tRNA modification Bacteria;
tRNA processing
fig|6666666.229900.peg.1412 CDS AJME02000078.1 12813 10963 -3 - 1851 DNA mismatch repair protein MutL DNA repair, bacterial MutL-MutS system
fig|6666666.229900.peg.1413 CDS AJME02000078.1 14300 12813 -2 - 1488 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) Murein Hydrolases;
Recycling of Peptidoglycan Amino Acids
fig|6666666.229900.peg.1414 CDS AJME02000078.1 14791 14297 -1 - 495 TsaE protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA Scaffold proteins for [4Fe-4S] cluster assembly (MRP family);
YjeE;
YrdC-YciO-Sua5 protein family
fig|6666666.229900.peg.1415 CDS AJME02000078.1 14766 14894 3 + 129 hypothetical protein - none -
fig|6666666.229900.peg.1416 CDS AJME02000078.1 16740 14947 -3 - 1794 Mlr4739 protein - none -
fig|6666666.229900.peg.1417 CDS AJME02000078.1 18036 17128 -3 - 909 RfbJ protein - none -
fig|6666666.229900.peg.1418 CDS AJME02000078.1 19556 18048 -2 - 1509 conserved domain protein - none -
fig|6666666.229900.peg.1419 CDS AJME02000078.1 20160 19543 -3 - 618 Glycerate kinase (EC 2.7.1.31) D-galactarate, D-glucarate and D-glycerate catabolism;
D-galactarate, D-glucarate and D-glycerate catabolism - gjo;
Glycerate metabolism;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Glycine and Serine Utilization;
Serine-glyoxylate cycle
fig|6666666.229900.peg.1420 CDS AJME02000078.1 21703 20189 -1 - 1515 Dca - none -
fig|6666666.229900.peg.1421 CDS AJME02000078.1 23037 22216 -3 - 822 probable phage integrase - none -
fig|6666666.229900.peg.1422 CDS AJME02000078.1 24374 23121 -2 - 1254 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes - none -
fig|6666666.229900.peg.1423 CDS AJME02000078.1 25041 24451 -3 - 591 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes - none -
fig|6666666.229900.peg.1424 CDS AJME02000078.1 25335 25514 3 + 180 Haemophilus-specific protein, uncharacterized - none -
fig|6666666.229900.peg.1425 CDS AJME02000078.1 25828 26007 1 + 180 hypothetical protein - none -
fig|6666666.229900.peg.1426 CDS AJME02000078.1 26577 26831 3 + 255 hypothetical protein - none -
fig|6666666.229900.peg.1427 CDS AJME02000078.1 26834 27178 2 + 345 Programmed cell death toxin MazF - none -
fig|6666666.229900.peg.1428 CDS AJME02000078.1 27262 27528 1 + 267 Virulence plasmid protein - none -
fig|6666666.229900.peg.1429 CDS AJME02000078.1 27743 28411 2 + 669 Cytolethal distending toxin subunit A Cytolethal distending toxin of Campylobacter jejuni;
Cytolethal distending toxins
fig|6666666.229900.peg.1430 CDS AJME02000078.1 28426 29277 1 + 852 Cytolethal distending toxin subunit B Cytolethal distending toxin of Campylobacter jejuni;
Cytolethal distending toxins
fig|6666666.229900.peg.1431 CDS AJME02000078.1 29288 29848 2 + 561 Cytolethal distending toxin subunit C Cytolethal distending toxin of Campylobacter jejuni;
Cytolethal distending toxins
fig|6666666.229900.peg.1432 CDS AJME02000078.1 31216 30455 -1 - 762 DUF1526 domain-containing protein - none -
fig|6666666.229900.peg.1433 CDS AJME02000078.1 31918 32031 1 + 114 hypothetical protein - none -
fig|6666666.229900.peg.1434 CDS AJME02000078.1 32266 32589 1 + 324 FIG00696053: hypothetical protein - none -
fig|6666666.229900.peg.1435 CDS AJME02000078.1 32589 32828 3 + 240 hypothetical protein - none -
fig|6666666.229900.peg.1436 CDS AJME02000078.1 32845 33252 1 + 408 FIG00696269: hypothetical protein - none -
fig|6666666.229900.peg.1437 CDS AJME02000078.1 33271 33642 1 + 372 FIG00696467: hypothetical protein - none -
fig|6666666.229900.peg.1438 CDS AJME02000078.1 33654 34286 3 + 633 Possible exported protein - none -
fig|6666666.229900.peg.1439 CDS AJME02000078.1 34286 35146 2 + 861 FIG00698030: hypothetical protein - none -
fig|6666666.229900.peg.1440 CDS AJME02000078.1 35157 36545 3 + 1389 putative exported protein - none -
fig|6666666.229900.peg.1441 CDS AJME02000078.1 36554 36961 2 + 408 putative lipoprotein - none -
fig|6666666.229900.peg.1442 CDS AJME02000078.1 37798 37250 -1 - 549 3@1-to-5@1 oligoribonuclease (orn) RNA processing and degradation, bacterial
fig|6666666.229900.peg.1443 CDS AJME02000078.1 37870 38910 1 + 1041 Ribosome small subunit-stimulated GTPase EngC Universal GTPases
fig|6666666.229900.peg.1444 CDS AJME02000078.1 39131 39388 2 + 258 Phosphotransferase system, phosphocarrier protein HPr Fructose utilization;
Mannitol Utilization
fig|6666666.229900.peg.1445 CDS AJME02000078.1 39505 41232 1 + 1728 Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) Fructose utilization;
Mannitol Utilization
fig|6666666.229900.peg.1446 CDS AJME02000078.1 41293 41793 1 + 501 PTS system, glucose-specific IIA component - none -
fig|6666666.229900.peg.1447 CDS AJME02000078.1 43958 41919 -2 - 2040 Oligopeptidase A (EC 3.4.24.70) Protein degradation
fig|6666666.229900.peg.1448 CDS AJME02000078.1 44100 44465 3 + 366 FIG039061: hypothetical protein related to heme utilization - none -
fig|6666666.229900.peg.1449 CDS AJME02000078.1 44521 46059 1 + 1539 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229900.peg.1450 CDS AJME02000078.1 46449 46330 -3 - 120 hypothetical protein - none -
fig|6666666.229900.peg.1451 CDS AJME02000078.1 46658 46494 -2 - 165 hypothetical protein - none -
fig|6666666.229900.peg.1452 CDS AJME02000080.1 119 379 2 + 261 hypothetical protein - none -
fig|6666666.229900.peg.1453 CDS AJME02000080.1 417 3365 3 + 2949 hypothetical protein - none -
fig|6666666.229900.peg.1454 CDS AJME02000081.1 299 814 2 + 516 Phage tail protein Phage tail proteins
fig|6666666.229900.peg.1455 CDS AJME02000081.1 1062 859 -3 - 204 hypothetical protein - none -
fig|6666666.229900.peg.1456 CDS AJME02000081.1 1478 1062 -2 - 417 hypothetical protein - none -
fig|6666666.229900.peg.1457 CDS AJME02000081.1 2290 1661 -1 - 630 hypothetical protein - none -
fig|6666666.229900.peg.1458 CDS AJME02000081.1 3404 2721 -2 - 684 transcriptional activator-regulatory protein - none -
fig|6666666.229900.peg.1459 CDS AJME02000081.1 3803 4003 2 + 201 hypothetical protein - none -
fig|6666666.229900.peg.1460 CDS AJME02000081.1 4188 4400 3 + 213 hypothetical protein - none -
fig|6666666.229900.peg.1461 CDS AJME02000081.1 4403 4765 2 + 363 Phage protein - none -
fig|6666666.229900.peg.1462 CDS AJME02000081.1 4774 5733 1 + 960 FIG00696091: hypothetical protein - none -
fig|6666666.229900.peg.1463 CDS AJME02000081.1 5730 6518 3 + 789 FIG00696091: hypothetical protein - none -
fig|6666666.229900.peg.1464 CDS AJME02000081.1 6628 7035 1 + 408 Adenine-specific methyltransferase (EC 2.1.1.72) CBSS-257314.1.peg.752
fig|6666666.229900.peg.1465 CDS AJME02000081.1 7039 7392 1 + 354 Phage DNA-binding protein Phage packaging machinery
fig|6666666.229900.peg.1466 CDS AJME02000082.1 41 523 2 + 483 hypothetical protein - none -
fig|6666666.229900.peg.1467 CDS AJME02000082.1 565 900 1 + 336 hypothetical protein - none -
fig|6666666.229900.peg.1468 CDS AJME02000084.1 158 565 2 + 408 Mobile element protein - none -
fig|6666666.229900.peg.1469 CDS AJME02000086.1 533 1018 2 + 486 Ferritin-like protein 2 - none -
fig|6666666.229900.peg.1470 CDS AJME02000086.1 1034 1531 2 + 498 Ferritin-like protein 2 - none -
fig|6666666.229900.peg.1471 CDS AJME02000086.1 1763 1593 -2 - 171 hypothetical protein - none -
fig|6666666.229900.peg.1472 CDS AJME02000086.1 1980 2645 3 + 666 Fumarate and nitrate reduction regulatory protein Oxidative stress
fig|6666666.229900.peg.1473 CDS AJME02000086.1 2763 3695 3 + 933 Universal stress protein E Universal stress protein family
fig|6666666.229900.peg.1474 CDS AJME02000086.1 3822 4658 3 + 837 ABC-type Co2+ transport system, periplasmic component - none -
fig|6666666.229900.peg.1475 CDS AJME02000086.1 7349 4743 -2 - 2607 DNA topoisomerase I (EC 5.99.1.2) CBSS-272943.3.peg.1367;
Conserved gene cluster associated with Met-tRNA formyltransferase;
DNA topoisomerases, Type I, ATP-independent
fig|6666666.229900.peg.1476 CDS AJME02000086.1 8423 7587 -2 - 837 COG0613, Predicted metal-dependent phosphoesterases (PHP family) YrdC-YciO-Sua5 protein family;
tRNA modification Bacteria
fig|6666666.229900.peg.1477 CDS AJME02000086.1 9456 8437 -3 - 1020 Dihydroorotate dehydrogenase (EC 1.3.3.1) De Novo Pyrimidine Synthesis
fig|6666666.229900.peg.1478 CDS AJME02000086.1 12137 9528 -2 - 2610 Membrane alanine aminopeptidase N (EC 3.4.11.2) Aminopeptidases (EC 3.4.11.-)
fig|6666666.229900.peg.1479 CDS AJME02000086.1 12559 13749 1 + 1191 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229900.peg.1480 CDS AJME02000086.1 14363 13800 -2 - 564 Transcriptional regulator, TetR family - none -
fig|6666666.229900.peg.1481 CDS AJME02000086.1 14511 15491 3 + 981 HlyD family secretion protein - none -
fig|6666666.229900.peg.1482 CDS AJME02000086.1 15494 18238 2 + 2745 ABC-type multidrug transport system, permease component - none -
fig|6666666.229900.peg.1483 CDS AJME02000086.1 18240 19367 3 + 1128 ABC-type multidrug transport system, permease component - none -
fig|6666666.229900.peg.1484 CDS AJME02000086.1 19387 20805 1 + 1419 Outer membrane component of tripartite multidrug resistance system Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria
fig|6666666.229900.peg.1485 CDS AJME02000088.1 505 167 -1 - 339 FIG00904093: hypothetical protein - none -
fig|6666666.229900.peg.1486 CDS AJME02000088.1 681 1886 3 + 1206 Mannose-6-phosphate isomerase (EC 5.3.1.8) Mannose Metabolism
fig|6666666.229900.peg.1487 CDS AJME02000088.1 1982 3745 2 + 1764 FIG00696060: hypothetical protein - none -
fig|6666666.229900.peg.1488 CDS AJME02000088.1 3915 4325 3 + 411 probable membrane protein YPO3565 - none -
fig|6666666.229900.peg.1489 CDS AJME02000088.1 4453 4283 -1 - 171 hypothetical protein - none -
fig|6666666.229900.peg.1490 CDS AJME02000088.1 4608 5864 3 + 1257 Outer membrane stress sensor protease DegQ, serine protease Periplasmic Stress Response;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229900.peg.1491 CDS AJME02000088.1 7125 6055 -3 - 1071 Outer membrane protein A precursor Osmoregulation
fig|6666666.229900.peg.1492 CDS AJME02000088.1 9394 7352 -1 - 2043 Excinuclease ABC subunit B DNA repair, UvrABC system
fig|6666666.229900.peg.1493 CDS AJME02000088.1 11037 10006 -3 - 1032 putative membrane protein - none -
fig|6666666.229900.peg.1494 CDS AJME02000088.1 11717 11052 -2 - 666 putative exported protein - none -
fig|6666666.229900.peg.1495 CDS AJME02000088.1 12120 13766 3 + 1647 ABC transporter ATP-binding protein - none -
fig|6666666.229900.peg.1496 CDS AJME02000088.1 14085 13870 -3 - 216 putative adhesin/invasin - none -
fig|6666666.229900.peg.1497 CDS AJME02000088.1 15310 17136 1 + 1827 Topoisomerase IV subunit B (EC 5.99.1.-) DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.229900.peg.1498 CDS AJME02000088.1 17339 17175 -2 - 165 hypothetical protein - none -
fig|6666666.229900.peg.1499 CDS AJME02000088.1 17586 17720 3 + 135 hypothetical protein - none -
fig|6666666.229900.peg.1500 CDS AJME02000088.1 17728 19983 1 + 2256 Topoisomerase IV subunit A (EC 5.99.1.-) DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.229900.peg.1501 CDS AJME02000088.1 20267 20878 2 + 612 Glutathione S-transferase (EC 2.5.1.18) Glutathione: Non-redox reactions
fig|6666666.229900.peg.1502 CDS AJME02000088.1 21767 20943 -2 - 825 Outer membrane protein A precursor Osmoregulation
fig|6666666.229900.peg.1503 CDS AJME02000088.1 23015 21957 -2 - 1059 Possible protease sohB (EC 3.4.21.-) - none -
fig|6666666.229900.peg.1504 CDS AJME02000088.1 23208 23798 3 + 591 FMN-dependent NADH-azoreductase - none -
fig|6666666.229900.peg.1505 CDS AJME02000088.1 25229 23892 -2 - 1338 NADH dehydrogenase (EC 1.6.99.3) Respiratory dehydrogenases 1;
Riboflavin synthesis cluster
fig|6666666.229900.peg.1506 CDS AJME02000088.1 26995 25406 -1 - 1590 Glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Respiratory dehydrogenases 1
fig|6666666.229900.peg.1507 CDS AJME02000088.1 28113 27265 -3 - 849 rRNA small subunit methyltransferase I 16S rRNA modification within P site of ribosome;
CBSS-160492.1.peg.550;
Heat shock dnaK gene cluster extended
fig|6666666.229900.peg.1508 CDS AJME02000088.1 28190 29908 2 + 1719 LppC putative lipoprotein CBSS-160492.1.peg.550
fig|6666666.229900.peg.1509 CDS AJME02000088.1 29918 30277 2 + 360 Predicted endonuclease distantly related to archaeal Holliday junction resolvase CBSS-160492.1.peg.550
fig|6666666.229900.peg.1510 CDS AJME02000088.1 30290 30874 2 + 585 Phosphoheptose isomerase (EC 5.3.1.-) CBSS-160492.1.peg.550;
Capsular heptose biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.229900.peg.1511 CDS AJME02000088.1 30939 31526 3 + 588 21 kDa hemolysin precursor CBSS-160492.1.peg.550
fig|6666666.229900.peg.1512 CDS AJME02000088.1 32324 31632 -2 - 693 Carbonic anhydrase (EC 4.2.1.1) - none -
fig|6666666.229900.peg.1513 CDS AJME02000088.1 32541 33611 3 + 1071 Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11) / Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) Cluster Ytf and putative sugar transporter;
Peptide methionine sulfoxide reductase;
Peptide methionine sulfoxide reductase;
Putative sugar ABC transporter (ytf cluster)
fig|6666666.229900.peg.1514 CDS AJME02000088.1 33615 34256 3 + 642 Cytochrome c-type biogenesis protein CcdA homolog, associated with MetSO reductase Peptide methionine sulfoxide reductase
fig|6666666.229900.peg.1515 CDS AJME02000088.1 34271 34753 2 + 483 Thiol:disulfide oxidoreductase associated with MetSO reductase Peptide methionine sulfoxide reductase
fig|6666666.229900.peg.1516 CDS AJME02000088.1 35079 34885 -3 - 195 Mobile element protein - none -
fig|6666666.229900.peg.1517 CDS AJME02000088.1 35244 35110 -3 - 135 Mobile element protein - none -
fig|6666666.229900.peg.1518 CDS AJME02000088.1 35454 35251 -3 - 204 Mobile element protein - none -
fig|6666666.229900.peg.1519 CDS AJME02000088.1 35567 35755 2 + 189 hypothetical protein - none -
fig|6666666.229900.peg.1520 CDS AJME02000088.1 36037 35891 -1 - 147 hypothetical protein - none -
fig|6666666.229900.peg.1521 CDS AJME02000088.1 36131 37483 2 + 1353 C4-dicarboxylate transporter DcuC (TC 2.A.61.1.1) Citrate Metabolism, Transport, and Regulation
fig|6666666.229900.peg.1522 CDS AJME02000088.1 37513 37698 1 + 186 hypothetical protein - none -
fig|6666666.229900.peg.1523 CDS AJME02000088.1 37738 38010 1 + 273 DNA-damage-inducible protein J DNA repair, bacterial;
Toxin-antitoxin replicon stabilization systems
fig|6666666.229900.peg.1524 CDS AJME02000088.1 38022 38288 3 + 267 YafQ toxin protein Toxin-antitoxin replicon stabilization systems
fig|6666666.229900.peg.1525 CDS AJME02000088.1 38320 39879 1 + 1560 GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2) Purine conversions
fig|6666666.229900.peg.1526 CDS AJME02000088.1 41222 40272 -2 - 951 hypothetical protein - none -
fig|6666666.229900.peg.1527 CDS AJME02000088.1 43004 43957 2 + 954 Acetyl-coenzyme A carboxyl transferase alpha chain (EC 6.4.1.2) Fatty Acid Biosynthesis FASII
fig|6666666.229900.peg.1528 CDS AJME02000088.1 44020 44877 1 + 858 Pyridoxal kinase (EC 2.7.1.35) Pyridoxin (Vitamin B6) Biosynthesis
fig|6666666.229900.peg.1529 CDS AJME02000088.1 44909 46255 2 + 1347 tRNA(Ile)-lysidine synthetase (EC 6.3.4.19) Cell division-ribosomal stress proteins cluster;
Folate biosynthesis cluster;
tRNA modification Bacteria;
tRNA processing;
tRNAmodification position 34
fig|6666666.229900.peg.1530 CDS AJME02000088.1 47614 46283 -1 - 1332 Guanine-hypoxanthine permease Purine Utilization
fig|6666666.229900.peg.1531 CDS AJME02000088.1 48125 47739 -2 - 387 Integral membrane protein - none -
fig|6666666.229900.peg.1532 CDS AJME02000088.1 48319 49335 1 + 1017 UDP-glucose 4-epimerase (EC 5.1.3.2) Lactose and Galactose Uptake and Utilization;
Rhamnose containing glycans
fig|6666666.229900.peg.1533 CDS AJME02000088.1 49341 49682 3 + 342 [NiFe] hydrogenase nickel incorporation protein HybF NiFe hydrogenase maturation
fig|6666666.229900.peg.1534 CDS AJME02000088.1 49689 50978 3 + 1290 AmpG permease Recycling of Peptidoglycan Amino Acids
fig|6666666.229900.peg.1535 CDS AJME02000088.1 51111 51755 3 + 645 Adenylate kinase (EC 2.7.4.3) Purine conversions
fig|6666666.229900.peg.1536 CDS AJME02000088.1 51842 51955 2 + 114 hypothetical protein - none -
fig|6666666.229900.peg.1537 CDS AJME02000088.1 53576 52203 -2 - 1374 DNA repair protein RadA DNA repair, bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229900.peg.1538 CDS AJME02000088.1 54733 53579 -1 - 1155 Adenylate cyclase (EC 4.6.1.1) cAMP signaling in bacteria
fig|6666666.229900.peg.1539 CDS AJME02000088.1 54898 55578 1 + 681 Phosphate transport regulator (distant homolog of PhoU) Phosphate metabolism
fig|6666666.229900.peg.1540 CDS AJME02000088.1 55604 56869 2 + 1266 Probable low-affinity inorganic phosphate transporter Phosphate metabolism
fig|6666666.229900.peg.1541 CDS AJME02000088.1 56938 57549 1 + 612 SH3 domain protein - none -
fig|6666666.229900.peg.1542 CDS AJME02000088.1 57549 58826 3 + 1278 tRNA nucleotidyltransferase (EC 2.7.7.21) (EC 2.7.7.25) Polyadenylation bacterial;
tRNA nucleotidyltransferase
fig|6666666.229900.peg.1543 CDS AJME02000088.1 58888 59514 1 + 627 Outer membrane lipoprotein LolB A Gammaproteobacteria Cluster Relating to Translation;
Lipopolysaccharide assembly;
Lipoprotein sorting system
fig|6666666.229900.peg.1544 CDS AJME02000088.1 59511 60422 3 + 912 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148) A Gammaproteobacteria Cluster Relating to Translation;
Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.229900.peg.1545 CDS AJME02000088.1 60463 61413 1 + 951 Ribose-phosphate pyrophosphokinase (EC 2.7.6.1) A Gammaproteobacteria Cluster Relating to Translation;
Pentose phosphate pathway;
Transcription repair cluster
fig|6666666.229900.peg.1546 CDS AJME02000088.1 61590 61736 3 + 147 hypothetical protein - none -
fig|6666666.229900.peg.1547 CDS AJME02000088.1 62037 63182 3 + 1146 L-lactate dehydrogenase (EC 1.1.2.3) Lactate utilization;
Respiratory dehydrogenases 1
fig|6666666.229900.peg.1548 CDS AJME02000088.1 63425 65014 2 + 1590 L-lactate permease Lactate utilization
fig|6666666.229900.peg.1549 CDS AJME02000088.1 65501 65169 -2 - 333 UPF0265 protein YeeX Broadly distributed proteins not in subsystems
fig|6666666.229900.peg.1550 CDS AJME02000088.1 65526 65642 3 + 117 hypothetical protein - none -
fig|6666666.229900.peg.1551 CDS AJME02000088.1 65701 66783 1 + 1083 Phosphoserine aminotransferase (EC 2.6.1.52) Glycine and Serine Utilization;
Pyridoxin (Vitamin B6) Biosynthesis;
Serine Biosynthesis
fig|6666666.229900.peg.1552 CDS AJME02000088.1 66795 67955 3 + 1161 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) @ Histidinol-phosphate aminotransferase (EC 2.6.1.9) Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229900.peg.1553 CDS AJME02000088.1 67966 69297 1 + 1332 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229900.peg.1554 CDS AJME02000088.1 69852 69385 -3 - 468 Ribonuclease HI (EC 3.1.26.4) CBSS-228410.1.peg.134;
CBSS-342610.3.peg.1536;
Ribonuclease H
fig|6666666.229900.peg.1555 CDS AJME02000088.1 69920 70681 2 + 762 DNA polymerase III epsilon subunit (EC 2.7.7.7) CBSS-228410.1.peg.134;
CBSS-342610.3.peg.1536
fig|6666666.229900.peg.1556 CDS AJME02000088.1 71034 71288 3 + 255 RelB/StbD replicon stabilization protein (antitoxin to RelE/StbE) Toxin-antitoxin replicon stabilization systems
fig|6666666.229900.peg.1557 CDS AJME02000088.1 71278 71568 1 + 291 RelE/StbE replicon stabilization toxin Toxin-antitoxin replicon stabilization systems
fig|6666666.229900.peg.1558 CDS AJME02000088.1 71968 71630 -1 - 339 conserved hypothetical protein - none -
fig|6666666.229900.peg.1559 CDS AJME02000088.1 72309 72752 3 + 444 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) Ammonia assimilation;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229900.peg.1560 CDS AJME02000088.1 72924 74312 3 + 1389 Putative protease - none -
fig|6666666.229900.peg.1561 CDS AJME02000088.1 74434 74547 1 + 114 hypothetical protein - none -
fig|6666666.229900.peg.1562 CDS AJME02000088.1 74831 75448 2 + 618 transcriptional regulator, putative - none -
fig|6666666.229900.peg.1563 CDS AJME02000089.1 482 156 -2 - 327 VgrG-3 protein - none -
fig|6666666.229900.peg.1564 CDS AJME02000089.1 993 844 -3 - 150 hypothetical protein - none -
fig|6666666.229900.peg.1565 CDS AJME02000089.1 1125 997 -3 - 129 hypothetical protein - none -
fig|6666666.229900.peg.1566 CDS AJME02000089.1 2681 2358 -2 - 324 hypothetical protein - none -
fig|6666666.229900.peg.1567 CDS AJME02000090.1 953 66 -2 - 888 RuBisCO operon transcriptional regulator CO2 uptake, carboxysome
fig|6666666.229900.peg.1568 CDS AJME02000090.1 1063 2532 1 + 1470 Sodium-dependent transporter - none -
fig|6666666.229900.peg.1569 CDS AJME02000090.1 2544 3143 3 + 600 Phosphoglycerate mutase (EC 5.4.2.1) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis;
Phosphoglycerate mutase protein family
fig|6666666.229900.peg.1570 CDS AJME02000090.1 3726 3532 -3 - 195 Transcription accessory protein (S1 RNA-binding domain) CBSS-243265.1.peg.198;
Cell division-ribosomal stress proteins cluster;
Transcription factors bacterial
fig|6666666.229900.peg.1571 CDS AJME02000090.1 3877 4359 1 + 483 Transcription elongation factor GreB CBSS-243265.1.peg.198;
Transcription factors bacterial
fig|6666666.229900.peg.1572 CDS AJME02000090.1 4633 4442 -1 - 192 hypothetical protein - none -
fig|6666666.229900.peg.1573 CDS AJME02000090.1 5235 4648 -3 - 588 DNA-directed RNA polymerase specialized sigma subunit, sigma24-like - none -
fig|6666666.229900.peg.1574 CDS AJME02000090.1 5702 5421 -2 - 282 hypothetical protein - none -
fig|6666666.229900.peg.1575 CDS AJME02000090.1 6125 6700 2 + 576 Putative preQ0 transporter Queuosine-Archaeosine Biosynthesis
fig|6666666.229900.peg.1576 CDS AJME02000090.1 8017 6767 -1 - 1251 Uncharacterized protein EC-HemY, likely associated with heme metabolism based on gene clustering with hemC, hemD in Proteobacteria (unrelated to HemY-type PPO in GramPositives) - none -
fig|6666666.229900.peg.1577 CDS AJME02000090.1 9415 8030 -1 - 1386 Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) Heme and Siroheme Biosynthesis
fig|6666666.229900.peg.1578 CDS AJME02000090.1 10190 9444 -2 - 747 Uroporphyrinogen-III synthase (EC 4.2.1.75) Heme and Siroheme Biosynthesis
fig|6666666.229900.peg.1579 CDS AJME02000090.1 10346 10203 -2 - 144 Porphobilinogen deaminase (EC 2.5.1.61) Heme and Siroheme Biosynthesis
fig|6666666.229900.peg.1580 CDS AJME02000090.1 11224 13725 1 + 2502 Adenylate cyclase (EC 4.6.1.1) cAMP signaling in bacteria
fig|6666666.229900.peg.1581 CDS AJME02000090.1 13735 14364 1 + 630 Nitrate/nitrite response regulator protein - none -
fig|6666666.229900.peg.1582 CDS AJME02000090.1 14432 16291 2 + 1860 Uncharacterized protein YtfM precursor Cluster Ytf and putative sugar transporter;
Putative sugar ABC transporter (ytf cluster)
fig|6666666.229900.peg.1583 CDS AJME02000090.1 16319 20191 2 + 3873 Uncharacterized protein YtfN Cluster Ytf and putative sugar transporter;
Putative sugar ABC transporter (ytf cluster)
fig|6666666.229900.peg.1584 CDS AJME02000090.1 20194 21741 1 + 1548 Exopolyphosphatase (EC 3.6.1.11) Phosphate metabolism;
Polyphosphate
fig|6666666.229900.peg.1585 CDS AJME02000090.1 23422 21806 -1 - 1617 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) CBSS-584.1.peg.3382;
Pyruvate metabolism I: anaplerotic reactions, PEP;
Serine-glyoxylate cycle
fig|6666666.229900.peg.1586 CDS AJME02000090.1 23680 24324 1 + 645 converved hypothetical protein - none -
fig|6666666.229900.peg.1587 CDS AJME02000090.1 24461 25261 2 + 801 NADH pyrophosphatase (EC 3.6.1.22) DNA uptake cluster;
Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229900.peg.1588 CDS AJME02000090.1 25258 26322 1 + 1065 Uroporphyrinogen III decarboxylase (EC 4.1.1.37) Heme and Siroheme Biosynthesis
fig|6666666.229900.peg.1589 CDS AJME02000090.1 26340 26930 3 + 591 FIG01200173: hypothetical protein - none -
fig|6666666.229900.peg.1590 CDS AJME02000090.1 27097 27369 1 + 273 DNA-binding protein HU-alpha DNA structural proteins, bacterial;
DNA uptake cluster
fig|6666666.229900.peg.1591 CDS AJME02000090.1 27495 28292 3 + 798 Transcriptional regulator of glmS gene, DeoR family - none -
fig|6666666.229900.peg.1592 CDS AJME02000090.1 28346 30178 2 + 1833 Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) Sialic Acid Metabolism;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229900.peg.1593 CDS AJME02000090.1 31394 30330 -2 - 1065 FIG01220323: hypothetical protein - none -
fig|6666666.229900.peg.1594 CDS AJME02000090.1 31494 32384 3 + 891 Transcriptional regulator, LysR family - none -
fig|6666666.229900.peg.1595 CDS AJME02000090.1 33632 32523 -2 - 1110 Putative exported protein precursor - none -
fig|6666666.229900.peg.1596 CDS AJME02000090.1 35424 33769 -3 - 1656 Carboxylesterase type B - none -
fig|6666666.229900.peg.1597 CDS AJME02000090.1 36630 35650 -3 - 981 Aldo-keto reductase - none -
fig|6666666.229900.peg.1598 CDS AJME02000090.1 37539 36793 -3 - 747 oxidoreductase of aldo/keto reductase family, subgroup 1 - none -
fig|6666666.229900.peg.1599 CDS AJME02000090.1 37722 38159 3 + 438 Transcriptional regulator, LysR family - none -
fig|6666666.229900.peg.1600 CDS AJME02000090.1 38168 38614 2 + 447 Transcriptional regulator, LysR family - none -
fig|6666666.229900.peg.1601 CDS AJME02000090.1 39518 38703 -2 - 816 putative tetracenomycin polyketide synthesis O-methyltransferase - none -
fig|6666666.229900.peg.1602 CDS AJME02000090.1 41355 39856 -3 - 1500 ATPase component BioM of energizing module of biotin ECF transporter Biotin biosynthesis;
Biotin synthesis cluster
fig|6666666.229900.peg.1603 CDS AJME02000090.1 41481 42149 3 + 669 Uncharacterized protein conserved in bacteria - none -
fig|6666666.229900.peg.1604 CDS AJME02000090.1 42152 42625 2 + 474 UPF0225 protein YchJ Broadly distributed proteins not in subsystems
fig|6666666.229900.peg.1605 CDS AJME02000090.1 42622 43452 1 + 831 Ribonuclease BN (EC 3.1.-.-) - none -
fig|6666666.229900.peg.1606 CDS AJME02000090.1 43449 43883 3 + 435 D-tyrosyl-tRNA(Tyr) deacylase (EC 3.6.1.n1) - none -
fig|6666666.229900.peg.1607 CDS AJME02000090.1 44049 45257 3 + 1209 Sodium/glutamate symport protein - none -
fig|6666666.229900.peg.1608 CDS AJME02000090.1 46701 45313 -3 - 1389 Copper sensory histidine kinase CpxA Orphan regulatory proteins
fig|6666666.229900.peg.1609 CDS AJME02000090.1 47441 46746 -2 - 696 Copper-sensing two-component system response regulator CpxR Orphan regulatory proteins
fig|6666666.229900.peg.1610 CDS AJME02000090.1 47896 47483 -1 - 414 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex Lipopolysaccharide assembly
fig|6666666.229900.peg.1611 CDS AJME02000090.1 48987 47962 -3 - 1026 Nucleoid-associated protein NdpA CBSS-211586.1.peg.1979
fig|6666666.229900.peg.1612 CDS AJME02000090.1 49080 49337 3 + 258 FIG002927: hypothetical protein CBSS-211586.1.peg.1979
fig|6666666.229900.peg.1613 CDS AJME02000090.1 49342 51081 1 + 1740 FIG001881: hydrolase of alkaline phosphatase superfamily CBSS-211586.1.peg.1979
fig|6666666.229900.peg.1614 CDS AJME02000090.1 51355 51218 -1 - 138 hypothetical protein - none -
fig|6666666.229900.peg.1615 CDS AJME02000090.1 51341 52330 2 + 990 Cytosine deaminase (EC 3.5.4.1) CBSS-326442.4.peg.1852;
Creatine and Creatinine Degradation;
pyrimidine conversions
fig|6666666.229900.peg.1616 CDS AJME02000090.1 53222 52428 -2 - 795 Nucleoside triphosphate pyrophosphohydrolase MazG (EC 3.6.1.8) Nucleoside triphosphate pyrophosphohydrolase MazG
fig|6666666.229900.peg.1617 CDS AJME02000090.1 53404 53829 1 + 426 Universal stress protein A Universal stress protein family
fig|6666666.229900.peg.1618 CDS AJME02000090.1 54029 56653 2 + 2625 Alanyl-tRNA synthetase (EC 6.1.1.7) Cluster containing Alanyl-tRNA synthetase;
tRNA aminoacylation, Ala
fig|6666666.229900.peg.1619 CDS AJME02000090.1 56776 56958 1 + 183 Carbon storage regulator Carbon Starvation;
Carbon storage regulator
fig|6666666.229900.peg.1620 CDS AJME02000090.1 57035 58354 2 + 1320 Phosphomannomutase (EC 5.4.2.8) Mannose Metabolism
fig|6666666.229900.peg.1621 CDS AJME02000090.1 58430 59317 2 + 888 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) - none -
fig|6666666.229900.peg.1622 CDS AJME02000090.1 59472 59789 3 + 318 Methionine repressor MetJ Methionine Biosynthesis
fig|6666666.229900.peg.1623 CDS AJME02000090.1 59882 60610 2 + 729 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) Cluster containing Glutathione synthetase;
Heat shock dnaK gene cluster extended;
RNA methylation
fig|6666666.229900.peg.1624 CDS AJME02000090.1 60628 61185 1 + 558 UPF0301 protein YqgE Cluster containing Glutathione synthetase
fig|6666666.229900.peg.1625 CDS AJME02000090.1 61185 61604 3 + 420 Putative Holliday junction resolvase YggF Cluster containing Alanyl-tRNA synthetase;
Cluster containing Glutathione synthetase
fig|6666666.229900.peg.1626 CDS AJME02000090.1 63011 61701 -2 - 1311 Enolase (EC 4.2.1.11) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis;
Serine-glyoxylate cycle
fig|6666666.229900.peg.1627 CDS AJME02000090.1 63420 63280 -3 - 141 hypothetical protein - none -
fig|6666666.229900.peg.1628 CDS AJME02000090.1 64802 63651 -2 - 1152 tRNA-specific 2-thiouridylase MnmA RNA methylation
fig|6666666.229900.peg.1629 CDS AJME02000090.1 65320 65063 -1 - 258 Probable exported or periplasmic protein in ApbE locus Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229900.peg.1630 CDS AJME02000090.1 66487 65399 -1 - 1089 Thiamin biosynthesis lipoprotein ApbE - none -
fig|6666666.229900.peg.1631 CDS AJME02000090.1 66633 66484 -3 - 150 hypothetical protein - none -
fig|6666666.229900.peg.1632 CDS AJME02000090.1 67873 66638 -1 - 1236 Na(+)-translocating NADH-quinone reductase subunit F (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229900.peg.1633 CDS AJME02000090.1 68481 67885 -3 - 597 Na(+)-translocating NADH-quinone reductase subunit E (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229900.peg.1634 CDS AJME02000090.1 69114 68485 -3 - 630 Na(+)-translocating NADH-quinone reductase subunit D (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229900.peg.1635 CDS AJME02000090.1 69899 69114 -2 - 786 Na(+)-translocating NADH-quinone reductase subunit C (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229900.peg.1636 CDS AJME02000090.1 71127 69892 -3 - 1236 Na(+)-translocating NADH-quinone reductase subunit B (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229900.peg.1637 CDS AJME02000090.1 72470 71130 -2 - 1341 Na(+)-translocating NADH-quinone reductase subunit A (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229900.peg.1638 CDS AJME02000090.1 72662 72495 -2 - 168 hypothetical protein - none -
fig|6666666.229900.peg.1639 CDS AJME02000090.1 72816 72700 -3 - 117 hypothetical protein - none -
fig|6666666.229900.peg.1640 CDS AJME02000090.1 73137 72826 -3 - 312 Cell division protein BolA Bacterial Cell Division;
CBSS-339671.5.peg.589
fig|6666666.229900.peg.1641 CDS AJME02000090.1 73241 73834 2 + 594 Hypothetical lipoprotein YajG precursor CBSS-339671.5.peg.589
fig|6666666.229900.peg.1642 CDS AJME02000090.1 75413 74334 -2 - 1080 Membrane-bound lytic murein transglycosylase C precursor (EC 3.2.1.-) Murein Hydrolases
fig|6666666.229900.peg.1643 CDS AJME02000090.1 75694 75416 -1 - 279 FIG001341: Probable Fe(2+)-trafficking protein YggX Heat shock dnaK gene cluster extended
fig|6666666.229900.peg.1644 CDS AJME02000090.1 76931 75672 -2 - 1260 A/G-specific adenine glycosylase (EC 3.2.2.-) DNA repair, bacterial
fig|6666666.229900.peg.1645 CDS AJME02000090.1 77029 77796 1 + 768 tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33) CBSS-83333.1.peg.2911;
RNA methylation;
tRNA modification Bacteria
fig|6666666.229900.peg.1646 CDS AJME02000090.1 77826 78167 3 + 342 FIG002060: uncharacterized protein YggL CBSS-83333.1.peg.2911
fig|6666666.229900.peg.1647 CDS AJME02000090.1 78386 79384 2 + 999 Ferric iron ABC transporter, iron-binding protein Iron acquisition in Streptococcus
fig|6666666.229900.peg.1648 CDS AJME02000090.1 79465 80985 1 + 1521 Ferric iron ABC transporter, permease protein Iron acquisition in Streptococcus
fig|6666666.229900.peg.1649 CDS AJME02000090.1 81001 82059 1 + 1059 Ferric iron ABC transporter, ATP-binding protein Iron acquisition in Streptococcus
fig|6666666.229900.peg.1650 CDS AJME02000090.1 83048 82080 -2 - 969 tRNA-dihydrouridine synthase C (EC 1.-.-.-) Murein hydrolase regulation and cell death;
tRNA modification Bacteria
fig|6666666.229900.peg.1651 CDS AJME02000090.1 83927 83052 -2 - 876 DnaJ-like protein DjlA - none -
fig|6666666.229900.peg.1652 CDS AJME02000090.1 84653 84009 -2 - 645 Orotate phosphoribosyltransferase (EC 2.4.2.10) De Novo Pyrimidine Synthesis
fig|6666666.229900.peg.1653 CDS AJME02000090.1 85379 84663 -2 - 717 Ribonuclease PH (EC 2.7.7.56) Heat shock dnaK gene cluster extended;
tRNA processing
fig|6666666.229900.peg.1654 CDS AJME02000090.1 85497 86360 3 + 864 Protein YicC CBSS-323097.3.peg.2594
fig|6666666.229900.peg.1655 CDS AJME02000090.1 86388 87275 3 + 888 Folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress - none -
fig|6666666.229900.peg.1656 CDS AJME02000090.1 87394 87783 1 + 390 Patatin-like phospholipase - none -
fig|6666666.229900.peg.1657 CDS AJME02000090.1 87858 88580 3 + 723 SSU ribosomal protein S2p (SAe) CBSS-312309.3.peg.1965;
Ribosome SSU bacterial;
Ribosome recycling related cluster
fig|6666666.229900.peg.1658 CDS AJME02000090.1 88629 88742 3 + 114 hypothetical protein - none -
fig|6666666.229900.peg.1659 CDS AJME02000090.1 88735 89583 1 + 849 Translation elongation factor Ts CBSS-312309.3.peg.1965;
Ribosome recycling related cluster;
Translation elongation factors bacterial
fig|6666666.229900.peg.1660 CDS AJME02000090.1 89717 89857 2 + 141 hypothetical protein - none -
fig|6666666.229900.peg.1661 CDS AJME02000090.1 89930 90616 2 + 687 DNA recombination and repair protein RecO CBSS-176299.4.peg.1292;
DNA repair, bacterial RecFOR pathway;
Glycyl-tRNA synthetase containing cluster
fig|6666666.229900.peg.1662 CDS AJME02000090.1 90618 91934 3 + 1317 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) RNA methylation
fig|6666666.229900.peg.1663 CDS AJME02000090.1 91944 94175 3 + 2232 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I CBSS-176299.4.peg.1292;
Stringent Response, (p)ppGpp metabolism
fig|6666666.229900.peg.1664 CDS AJME02000090.1 94201 94557 1 + 357 Diacylglycerol kinase (EC 2.7.1.107) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Riboflavin synthesis cluster
fig|6666666.229900.peg.1665 CDS AJME02000090.1 95387 94587 -2 - 801 Orf2 - none -
fig|6666666.229900.peg.1666 CDS AJME02000090.1 95426 95551 2 + 126 hypothetical protein - none -
fig|6666666.229900.peg.1667 CDS AJME02000090.1 98639 95541 -2 - 3099 RND multidrug efflux transporter; Acriflavin resistance protein Multidrug Resistance Efflux Pumps
fig|6666666.229900.peg.1668 CDS AJME02000090.1 99849 98653 -3 - 1197 Probable Co/Zn/Cd efflux system membrane fusion protein Cobalt-zinc-cadmium resistance
fig|6666666.229900.peg.1669 CDS AJME02000090.1 100441 99875 -1 - 567 Probable Co/Zn/Cd efflux system membrane fusion protein Cobalt-zinc-cadmium resistance
fig|6666666.229900.peg.1670 CDS AJME02000090.1 101453 100641 -2 - 813 Cell division protein - none -
fig|6666666.229900.peg.1671 CDS AJME02000090.1 103803 101563 -3 - 2241 Helicase PriA essential for oriC/DnaA-independent DNA replication Conserved gene cluster associated with Met-tRNA formyltransferase
fig|6666666.229900.peg.1672 CDS AJME02000090.1 103987 104850 1 + 864 Involved in lipopolysaccharide biosynthesis - none -
fig|6666666.229900.peg.1673 CDS AJME02000090.1 105861 104857 -3 - 1005 putative capsular polysaccharide synthesis protein - none -
fig|6666666.229900.peg.1674 CDS AJME02000090.1 106718 105870 -2 - 849 Lipooligosaccharide biosynthesis protein lex-1 (EC 2.-.-.-) - none -
fig|6666666.229900.peg.1675 CDS AJME02000090.1 106976 107188 2 + 213 LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-dependent - none -
fig|6666666.229900.peg.1676 CDS AJME02000090.1 107251 107943 1 + 693 Beta-1,4-galactosyltransferase LOS core oligosaccharide biosynthesis
fig|6666666.229900.peg.1677 CDS AJME02000090.1 107944 108966 1 + 1023 COG0859: ADP-heptose:LPS heptosyltransferase - none -
fig|6666666.229900.peg.1678 CDS AJME02000090.1 108976 110028 1 + 1053 COG0859: ADP-heptose:LPS heptosyltransferase - none -
fig|6666666.229900.peg.1679 CDS AJME02000090.1 110888 110031 -2 - 858 Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) DNA Repair Base Excision
fig|6666666.229900.peg.1680 CDS AJME02000090.1 111098 110928 -2 - 171 LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-independent - none -
fig|6666666.229900.peg.1681 CDS AJME02000090.1 111283 111110 -1 - 174 LSU ribosomal protein L28p - none -
fig|6666666.229900.peg.1682 CDS AJME02000090.1 112214 111555 -2 - 660 DNA repair protein RadC DNA repair, bacterial
fig|6666666.229900.peg.1683 CDS AJME02000090.1 112417 112265 -1 - 153 hypothetical protein - none -
fig|6666666.229900.peg.1684 CDS AJME02000090.1 112392 113591 3 + 1200 Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) / Phosphopantothenoylcysteine synthetase (EC 6.3.2.5) Coenzyme A Biosynthesis;
Coenzyme A Biosynthesis
fig|6666666.229900.peg.1685 CDS AJME02000090.1 113660 114115 2 + 456 Deoxyuridine 5@1-triphosphate nucleotidohydrolase (EC 3.6.1.23) Housecleaning nucleoside triphosphate pyrophosphatases;
Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229900.peg.1686 CDS AJME02000090.1 114115 114714 1 + 600 Transcriptional regulator SlmA, TetR family - none -
fig|6666666.229900.peg.1687 CDS AJME02000090.1 114738 114956 3 + 219 FIG00696234: hypothetical protein - none -
fig|6666666.229900.peg.1688 CDS AJME02000090.1 114994 115638 1 + 645 Cyclic AMP receptor protein cAMP signaling in bacteria
fig|6666666.229900.peg.1689 CDS AJME02000090.1 117141 115771 -3 - 1371 Glutathione reductase (EC 1.8.1.7) Glutathione: Redox cycle
fig|6666666.229900.peg.1690 CDS AJME02000090.1 118081 117236 -1 - 846 Protein involved in catabolism of external DNA DNA processing cluster;
DNA uptake cluster
fig|6666666.229900.peg.1691 CDS AJME02000090.1 120744 118177 -3 - 2568 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) DNA uptake cluster;
Peptidoglycan Biosynthesis;
Type IV pilus
fig|6666666.229900.peg.1692 CDS AJME02000090.1 120878 121687 2 + 810 Type IV pilus biogenesis protein PilM; Competence protein A DNA uptake cluster;
Type IV pilus
fig|6666666.229900.peg.1693 CDS AJME02000090.1 121698 122216 3 + 519 Type IV pilus biogenesis protein PilN; Competence protein B DNA uptake cluster;
Type IV pilus
fig|6666666.229900.peg.1694 CDS AJME02000090.1 122213 122737 2 + 525 Competence protein C; Chromosome segregation ATPases DNA uptake cluster
fig|6666666.229900.peg.1695 CDS AJME02000090.1 122737 123129 1 + 393 Type IV pilus biogenesis protein PilQ; Competence protein D DNA uptake cluster;
Type IV pilus
fig|6666666.229900.peg.1696 CDS AJME02000090.1 123150 124559 3 + 1410 Type IV pilus biogenesis protein PilQ; Competence protein E DNA uptake cluster;
Type IV pilus
fig|6666666.229900.peg.1697 CDS AJME02000090.1 124773 125300 3 + 528 Shikimate kinase I (EC 2.7.1.71) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229900.peg.1698 CDS AJME02000090.1 125324 126412 2 + 1089 3-dehydroquinate synthase (EC 4.2.3.4) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate);
Type IV pilus
fig|6666666.229900.peg.1699 CDS AJME02000090.1 126493 127269 1 + 777 Methyl-directed repair DNA adenine methylase (EC 2.1.1.72) DNA repair, bacterial
fig|6666666.229900.peg.1700 CDS AJME02000090.1 128035 127508 -1 - 528 probable integral membrane protein NMA1777 - none -
fig|6666666.229900.peg.1701 CDS AJME02000090.1 128388 128086 -3 - 303 probable integral membrane protein NMA1777 - none -
fig|6666666.229900.peg.1702 CDS AJME02000090.1 128831 128388 -2 - 444 Transcriptional regulator, MarR family - none -
fig|6666666.229900.peg.1703 CDS AJME02000090.1 128979 130094 3 + 1116 Membrane fusion protein of RND family multidrug efflux pump Multidrug Resistance Efflux Pumps
fig|6666666.229900.peg.1704 CDS AJME02000090.1 130679 130491 -2 - 189 hypothetical protein - none -
fig|6666666.229900.peg.1705 CDS AJME02000090.1 130846 132915 1 + 2070 Hypothetical SecA-related protein - none -
fig|6666666.229900.peg.1706 CDS AJME02000091.1 1811 1167 -2 - 645 Outer membrane lipoprotein carrier protein LolA Lipopolysaccharide assembly;
Lipoprotein sorting system
fig|6666666.229900.peg.1707 CDS AJME02000091.1 4144 1877 -1 - 2268 Cell division protein FtsK Bacterial Cell Division;
Bacterial Cytoskeleton;
Bacterial RNA-metabolizing Zn-dependent hydrolases
fig|6666666.229900.peg.1708 CDS AJME02000091.1 12207 11728 -3 - 480 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229900.peg.1709 CDS AJME02000091.1 12321 12494 3 + 174 DNA repair protein RadA DNA repair, bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229900.peg.1710 CDS AJME02000091.1 13927 12923 -1 - 1005 Biotin synthase (EC 2.8.1.6) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229900.peg.1711 CDS AJME02000091.1 14620 13973 -1 - 648 Thiamin ABC transporter, ATPase component / Thiamine transport ATP-binding protein thiQ Thiamin biosynthesis
fig|6666666.229900.peg.1712 CDS AJME02000091.1 16232 14604 -2 - 1629 Thiamin ABC transporter, transmembrane component Thiamin biosynthesis
fig|6666666.229900.peg.1713 CDS AJME02000091.1 17245 16241 -1 - 1005 Thiamin ABC transporter, substrate-binding component Thiamin biosynthesis
fig|6666666.229900.peg.1714 CDS AJME02000091.1 17647 17267 -1 - 381 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) - none -
fig|6666666.229900.peg.1715 CDS AJME02000091.1 18492 18337 -3 - 156 CRISPR-associated protein Cas2 CRISPRs
fig|6666666.229900.peg.1716 CDS AJME02000091.1 19520 18816 -2 - 705 hypothetical protein - none -
fig|6666666.229900.peg.1717 CDS AJME02000091.1 20236 19586 -1 - 651 CRISPR-associated RecB family exonuclease Cas4 / CRISPR-associated protein Cas1 CRISPRs
fig|6666666.229900.peg.1718 CDS AJME02000091.1 21247 20381 -1 - 867 CRISPR-associated protein, Csd2 family CRISPRs
fig|6666666.229900.peg.1719 CDS AJME02000091.1 23038 21260 -1 - 1779 CRISPR-associated protein, Csd1 family CRISPRs
fig|6666666.229900.peg.1720 CDS AJME02000091.1 23709 23035 -3 - 675 CRISPR-associated protein, Cas5d family CRISPRs
fig|6666666.229900.peg.1721 CDS AJME02000091.1 26541 23824 -3 - 2718 Type III restriction-modification enzyme helicase subunit - none -
fig|6666666.229900.peg.1722 CDS AJME02000091.1 27572 26538 -2 - 1035 Putative DNA-binding protein in cluster with Type I restriction-modification system Restriction-Modification System
fig|6666666.229900.peg.1723 CDS AJME02000091.1 27699 27556 -3 - 144 hypothetical protein - none -
fig|6666666.229900.peg.1724 CDS AJME02000091.1 29435 27699 -2 - 1737 Type III restriction-modification system methylation subunit (EC 2.1.1.72) Restriction-Modification System
fig|6666666.229900.peg.1725 CDS AJME02000091.1 30390 29449 -3 - 942 FIG00807791: hypothetical protein - none -
fig|6666666.229900.peg.1726 CDS AJME02000091.1 33874 30998 -1 - 2877 helicase (Snf2/Rad54 family) - none -
fig|6666666.229900.peg.1727 CDS AJME02000091.1 35800 34013 -1 - 1788 CRISPR-associated helicase Cas3 CRISPRs
fig|6666666.229900.peg.1728 CDS AJME02000091.1 36265 35831 -1 - 435 CRISPR-associated helicase Cas3 CRISPRs
fig|6666666.229900.peg.1729 CDS AJME02000091.1 36581 37243 2 + 663 Putative TEGT family carrier/transport protein CBSS-326442.4.peg.1852
fig|6666666.229900.peg.1730 CDS AJME02000091.1 37329 37658 3 + 330 tRNA 2-thiouridine synthesizing protein E (EC 2.8.1.-) CBSS-326442.4.peg.1852;
Lipoic acid synthesis cluster;
Sulfite reduction-associated complex DsrMKJOP and co-clustering genes
fig|6666666.229900.peg.1731 CDS AJME02000091.1 37756 38637 1 + 882 Manganese ABC transporter, periplasmic-binding protein SitA - none -
fig|6666666.229900.peg.1732 CDS AJME02000091.1 38637 39527 3 + 891 Manganese ABC transporter, ATP-binding protein SitB - none -
fig|6666666.229900.peg.1733 CDS AJME02000091.1 39527 40384 2 + 858 Manganese ABC transporter, inner membrane permease protein SitC - none -
fig|6666666.229900.peg.1734 CDS AJME02000091.1 40381 41229 1 + 849 Manganese ABC transporter, inner membrane permease protein SitD - none -
fig|6666666.229900.peg.1735 CDS AJME02000091.1 41476 41204 -1 - 273 Acylphosphate phosphohydrolase (EC 3.6.1.7), putative Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229900.peg.1736 CDS AJME02000091.1 41621 42301 2 + 681 UPF0319 protein YccT precursor CBSS-83333.1.peg.946
fig|6666666.229900.peg.1737 CDS AJME02000091.1 42364 42822 1 + 459 Methylglyoxal synthase (EC 4.2.3.3) CBSS-83333.1.peg.946;
Methylglyoxal Metabolism
fig|6666666.229900.peg.1738 CDS AJME02000091.1 42822 43295 3 + 474 Inner membrane protein YccF CBSS-83333.1.peg.946
fig|6666666.229900.peg.1739 CDS AJME02000091.1 43304 45445 2 + 2142 Putative efflux (PET) family inner membrane protein YccS CBSS-83333.1.peg.946
fig|6666666.229900.peg.1740 CDS AJME02000091.1 45948 45442 -3 - 507 FIG001674: hypothetical protein - none -
fig|6666666.229900.peg.1741 CDS AJME02000091.1 46011 46961 3 + 951 Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p YrdC-YciO-Sua5 protein family
fig|6666666.229900.peg.1742 CDS AJME02000091.1 48072 47128 -3 - 945 Transketolase, C-terminal section (EC 2.2.1.1) Pentose phosphate pathway
fig|6666666.229900.peg.1743 CDS AJME02000091.1 48886 48062 -1 - 825 Transketolase, N-terminal section (EC 2.2.1.1) Pentose phosphate pathway
fig|6666666.229900.peg.1744 CDS AJME02000091.1 50251 48896 -1 - 1356 FIG00732228: membrane protein - none -
fig|6666666.229900.peg.1745 CDS AJME02000091.1 50537 50268 -2 - 270 Putative sugar phosphotransferase component II B - none -
fig|6666666.229900.peg.1746 CDS AJME02000091.1 51722 51105 -2 - 618 hypothetical protein - none -
fig|6666666.229900.peg.1747 CDS AJME02000091.1 51877 51677 -1 - 201 hypothetical protein - none -
fig|6666666.229900.peg.1748 CDS AJME02000093.1 2000 222 -2 - 1779 Aspartyl-tRNA synthetase (EC 6.1.1.12) tRNA aminoacylation, Asp and Asn
fig|6666666.229900.peg.1749 CDS AJME02000093.1 2208 2735 3 + 528 membrane protein, putative - none -
fig|6666666.229900.peg.1750 CDS AJME02000093.1 2807 3532 2 + 726 tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229900.peg.1751 CDS AJME02000093.1 6179 3612 -2 - 2568 FIG00362583: hypothetical protein - none -
fig|6666666.229900.peg.1752 CDS AJME02000093.1 7653 6322 -3 - 1332 Glycerol-3-phosphate transporter - none -
fig|6666666.229900.peg.1753 CDS AJME02000093.1 8053 10005 1 + 1953 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229900.peg.1754 CDS AJME02000093.1 10164 10571 3 + 408 Lactoylglutathione lyase (EC 4.4.1.5) Glutathione: Non-redox reactions;
Methylglyoxal Metabolism
fig|6666666.229900.peg.1755 CDS AJME02000093.1 10658 11311 2 + 654 Ribonuclease T (EC 3.1.13.-) tRNA processing
fig|6666666.229900.peg.1756 CDS AJME02000093.1 11663 13015 2 + 1353 Histidine permease YuiF - none -
fig|6666666.229900.peg.1757 CDS AJME02000093.1 13079 13645 2 + 567 Primosomal replication protein N@1@1 - none -
fig|6666666.229900.peg.1758 CDS AJME02000093.1 15127 13703 -1 - 1425 tRNA-i(6)A37 methylthiotransferase Methylthiotransferases;
tRNA-methylthiotransferase containing cluster;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229900.peg.1759 CDS AJME02000093.1 17060 16329 -2 - 732 FIG053235: Diacylglucosamine hydrolase like Llipid A biosynthesis cluster
fig|6666666.229900.peg.1760 CDS AJME02000093.1 18033 17062 -3 - 972 Octaprenyl diphosphate synthase (EC 2.5.1.90) Isoprenoinds for Quinones;
Polyprenyl Diphosphate Biosynthesis
fig|6666666.229900.peg.1761 CDS AJME02000093.1 18302 18613 2 + 312 LSU ribosomal protein L21p CBSS-176279.3.peg.868
fig|6666666.229900.peg.1762 CDS AJME02000093.1 18634 18891 1 + 258 LSU ribosomal protein L27p CBSS-176279.3.peg.868
fig|6666666.229900.peg.1763 CDS AJME02000093.1 18963 19895 3 + 933 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229900.peg.1764 CDS AJME02000093.1 19973 20890 2 + 918 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229900.peg.1765 CDS AJME02000093.1 20927 22093 2 + 1167 GTP-binding protein Obg CBSS-176279.3.peg.868;
Universal GTPases
fig|6666666.229900.peg.1766 CDS AJME02000093.1 22209 22090 -3 - 120 hypothetical protein - none -
fig|6666666.229900.peg.1767 CDS AJME02000093.1 22643 22161 -2 - 483 tmRNA-binding protein SmpB Heat shock dnaK gene cluster extended;
Translation termination factors bacterial
fig|6666666.229900.peg.1768 CDS AJME02000093.1 22990 22853 -1 - 138 hypothetical protein - none -
fig|6666666.229900.peg.1769 CDS AJME02000093.1 23470 24627 1 + 1158 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229900.peg.1770 CDS AJME02000093.1 24728 25648 2 + 921 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229900.peg.1771 CDS AJME02000093.1 25658 26596 2 + 939 Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229900.peg.1772 CDS AJME02000093.1 26606 27589 2 + 984 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229900.peg.1773 CDS AJME02000093.1 27586 28581 1 + 996 Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229900.peg.1774 CDS AJME02000093.1 29395 28688 -1 - 708 Aerobic respiration control protein arcA - none -
fig|6666666.229900.peg.1775 CDS AJME02000093.1 30061 29795 -1 - 267 LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-independent - none -
fig|6666666.229900.peg.1776 CDS AJME02000093.1 30842 30273 -2 - 570 Lysine decarboxylase family - none -
fig|6666666.229900.peg.1777 CDS AJME02000093.1 30985 32775 1 + 1791 Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8) Biogenesis of c-type cytochromes;
Periplasmic disulfide interchange
fig|6666666.229900.peg.1778 CDS AJME02000093.1 32877 32764 -3 - 114 hypothetical protein - none -
fig|6666666.229900.peg.1779 CDS AJME02000093.1 32855 33244 2 + 390 INTEGRAL MEMBRANE PROTEIN (Rhomboid family) - none -
fig|6666666.229900.peg.1780 CDS AJME02000093.1 36574 33683 -1 - 2892 Ribonuclease E (EC 3.1.26.12) RNA processing and degradation, bacterial;
Ribosome biogenesis bacterial
fig|6666666.229900.peg.1781 CDS AJME02000093.1 36809 36931 2 + 123 hypothetical protein - none -
fig|6666666.229900.peg.1782 CDS AJME02000093.1 37041 38000 3 + 960 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) RNA pseudouridine syntheses;
Ribosome biogenesis bacterial
fig|6666666.229900.peg.1783 CDS AJME02000093.1 38414 38199 -2 - 216 Thioredoxin - none -
fig|6666666.229900.peg.1784 CDS AJME02000093.1 39617 38622 -2 - 996 D-lactate dehydrogenase (EC 1.1.1.28) Fermentations: Lactate;
Fermentations: Mixed acid
fig|6666666.229900.peg.1785 CDS AJME02000093.1 40771 39641 -1 - 1131 Cystathionine gamma-synthase (EC 2.5.1.48) Methionine Biosynthesis
fig|6666666.229900.peg.1786 CDS AJME02000093.1 41458 41252 -1 - 207 Tfp pilus assembly protein, pilus retraction ATPase PilT - none -
fig|6666666.229900.peg.1787 CDS AJME02000093.1 41795 41670 -2 - 126 hypothetical protein - none -
fig|6666666.229900.peg.1788 CDS AJME02000093.1 41785 41976 1 + 192 hypothetical protein - none -
fig|6666666.229900.peg.1789 CDS AJME02000093.1 42253 42116 -1 - 138 hypothetical protein - none -
fig|6666666.229900.peg.1790 CDS AJME02000094.1 208 333 1 + 126 Mobile element protein - none -
fig|6666666.229900.peg.1791 CDS AJME02000095.1 2292 211 -3 - 2082 VgrG-3 protein - none -
fig|6666666.229900.peg.1792 CDS AJME02000095.1 2603 2445 -2 - 159 hypothetical protein - none -
fig|6666666.229900.peg.1793 CDS AJME02000096.1 1994 651 -2 - 1344 putative hexose phosphate transport protein - none -
fig|6666666.229900.peg.1794 CDS AJME02000096.1 2815 2012 -1 - 804 Inositol-1-monophosphatase (EC 3.1.3.25) - none -
fig|6666666.229900.peg.1795 CDS AJME02000096.1 3079 3909 1 + 831 5-deoxy-glucuronate isomerase (EC 5.3.1.-) Inositol catabolism
fig|6666666.229900.peg.1796 CDS AJME02000096.1 4795 4676 -1 - 120 hypothetical protein - none -
fig|6666666.229900.peg.1797 CDS AJME02000097.1 1156 131 -1 - 1026 hypothetical protein - none -
fig|6666666.229900.peg.1798 CDS AJME02000099.1 212 685 2 + 474 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster
fig|6666666.229900.peg.1799 CDS AJME02000099.1 692 1117 2 + 426 Transcription termination protein NusB Riboflavin synthesis cluster;
Transcription factors bacterial
fig|6666666.229900.peg.1800 CDS AJME02000099.1 1136 2119 2 + 984 Thiamine-monophosphate kinase (EC 2.7.4.16) 5-FCL-like protein;
Riboflavin synthesis cluster;
Thiamin biosynthesis
fig|6666666.229900.peg.1801 CDS AJME02000099.1 2129 2620 2 + 492 Phosphatidylglycerophosphatase A (EC 3.1.3.27) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Riboflavin synthesis cluster
fig|6666666.229900.peg.1802 CDS AJME02000099.1 2629 3252 1 + 624 L-lysine permease - none -
fig|6666666.229900.peg.1803 CDS AJME02000099.1 3872 4048 2 + 177 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229900.peg.1804 CDS AJME02000099.1 4386 4138 -3 - 249 Ferredoxin Soluble cytochromes and functionally related electron carriers
fig|6666666.229900.peg.1805 CDS AJME02000099.1 4725 4456 -3 - 270 hypothetical protein - none -
fig|6666666.229900.peg.1806 CDS AJME02000099.1 5877 4747 -3 - 1131 Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) Ribonucleotide reduction
fig|6666666.229900.peg.1807 CDS AJME02000099.1 6851 5898 -2 - 954 hypothetical protein - none -
fig|6666666.229900.peg.1808 CDS AJME02000099.1 7910 7164 -2 - 747 hypothetical protein - none -
fig|6666666.229900.peg.1809 CDS AJME02000099.1 12050 10518 -2 - 1533 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) Restriction-Modification System
fig|6666666.229900.peg.1810 CDS AJME02000099.1 12092 12253 2 + 162 hypothetical protein - none -
fig|6666666.229900.peg.1811 CDS AJME02000099.1 12264 13292 3 + 1029 Ferric iron ABC transporter, iron-binding protein Iron acquisition in Streptococcus
fig|6666666.229900.peg.1812 CDS AJME02000099.1 13344 15374 3 + 2031 Ferric iron ABC transporter, permease protein Iron acquisition in Streptococcus
fig|6666666.229900.peg.1813 CDS AJME02000099.1 15358 16398 1 + 1041 Sulfate and thiosulfate import ATP-binding protein CysA (EC 3.6.3.25) Cysteine Biosynthesis;
Uptake of selenate and selenite
fig|6666666.229900.peg.1814 CDS AJME02000099.1 16473 16357 -3 - 117 hypothetical protein - none -
fig|6666666.229900.peg.1815 CDS AJME02000099.1 18509 16458 -2 - 2052 Periplasmic alpha-amylase (EC 3.2.1.1) Maltose and Maltodextrin Utilization
fig|6666666.229900.peg.1816 CDS AJME02000099.1 19493 18603 -2 - 891 Maltose/maltodextrin ABC transporter, permease protein MalG Maltose and Maltodextrin Utilization
fig|6666666.229900.peg.1817 CDS AJME02000099.1 21053 19515 -2 - 1539 Maltose/maltodextrin ABC transporter, permease protein MalF Maltose and Maltodextrin Utilization
fig|6666666.229900.peg.1818 CDS AJME02000099.1 21208 21077 -1 - 132 hypothetical protein - none -
fig|6666666.229900.peg.1819 CDS AJME02000099.1 22367 21177 -2 - 1191 Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein MalE Alpha-Amylase locus in Streptocococcus;
Bacterial Chemotaxis;
Maltose and Maltodextrin Utilization
fig|6666666.229900.peg.1820 CDS AJME02000099.1 22792 22679 -1 - 114 hypothetical protein - none -
fig|6666666.229900.peg.1821 CDS AJME02000099.1 22823 23941 2 + 1119 Maltose/maltodextrin transport ATP-binding protein MalK (EC 3.6.3.19) Maltose and Maltodextrin Utilization
fig|6666666.229900.peg.1822 CDS AJME02000099.1 24018 25301 3 + 1284 Maltoporin (maltose/maltodextrin high-affinity receptor, phage lambda receptor protein) Maltose and Maltodextrin Utilization
fig|6666666.229900.peg.1823 CDS AJME02000099.1 25387 26289 1 + 903 Maltose operon periplasmic protein MalM Maltose and Maltodextrin Utilization
fig|6666666.229900.peg.1824 CDS AJME02000099.1 26360 26491 2 + 132 hypothetical protein - none -
fig|6666666.229900.peg.1825 CDS AJME02000099.1 27461 26643 -2 - 819 Aldose 1-epimerase - none -
fig|6666666.229900.peg.1826 CDS AJME02000099.1 27537 29474 3 + 1938 DinG family ATP-dependent helicase YoaA DNA repair, bacterial DinG and relatives
fig|6666666.229900.peg.1827 CDS AJME02000099.1 29477 30199 2 + 723 TsaB protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Ribosome biogenesis bacterial;
YgjD and YeaZ;
YjeE;
YrdC-YciO-Sua5 protein family
fig|6666666.229900.peg.1828 CDS AJME02000099.1 30231 30788 3 + 558 Starvation lipoprotein Slp paralog Carbon Starvation
fig|6666666.229900.peg.1829 CDS AJME02000099.1 30831 30977 3 + 147 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) Biotin biosynthesis;
Biotin synthesis cluster
fig|6666666.229900.peg.1830 CDS AJME02000099.1 31056 31433 3 + 378 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) Biotin biosynthesis;
Biotin synthesis cluster
fig|6666666.229900.peg.1831 CDS AJME02000099.1 31434 32516 3 + 1083 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) Biotin biosynthesis;
Biotin synthesis cluster
fig|6666666.229900.peg.1832 CDS AJME02000099.1 32583 33740 3 + 1158 Ribonuclease D (EC 3.1.26.3) tRNA processing
fig|6666666.229900.peg.1833 CDS AJME02000099.1 35210 33828 -2 - 1383 Cytochrome c551 peroxidase (EC 1.11.1.5) Protection from Reactive Oxygen Species
fig|6666666.229900.peg.1834 CDS AJME02000099.1 36990 37811 3 + 822 probable glucanotransferase (endo alpha-1,4 polygalactosaminidase related protein) - none -
fig|6666666.229900.peg.1835 CDS AJME02000099.1 38333 39259 2 + 927 Putative stomatin/prohibitin-family membrane protease subunit YbbK - none -
fig|6666666.229900.peg.1836 CDS AJME02000099.1 39283 39729 1 + 447 Putative activity regulator of membrane protease YbbK - none -
fig|6666666.229900.peg.1837 CDS AJME02000099.1 39738 40349 3 + 612 NAD(P)H oxidoreductase YRKL (EC 1.6.99.-) @ Putative NADPH-quinone reductase (modulator of drug activity B) @ Flavodoxin 2 Flavodoxin;
Flavodoxin
fig|6666666.229900.peg.1838 CDS AJME02000099.1 40349 40912 2 + 564 Putative oxidoreductase component of anaerobic dehydrogenases; Functional role page for Chaperone protein TorD - none -
fig|6666666.229900.peg.1839 CDS AJME02000099.1 41905 40970 -1 - 936 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) KDO2-Lipid A biosynthesis
fig|6666666.229900.peg.1840 CDS AJME02000099.1 42019 43449 1 + 1431 ADP-heptose synthase (EC 2.7.-.-) / D-glycero-beta-D-manno-heptose 7-phosphate kinase LOS core oligosaccharide biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.229900.peg.1841 CDS AJME02000099.1 43871 43491 -2 - 381 Cysteine desulfurase CsdA-CsdE, sulfur acceptor protein CsdE - none -
fig|6666666.229900.peg.1842 CDS AJME02000099.1 45064 43868 -1 - 1197 Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA Alanine biosynthesis;
mnm5U34 biosynthesis bacteria
fig|6666666.229900.peg.1843 CDS AJME02000099.1 45570 45070 -3 - 501 Micrococcal nuclease (thermonuclease) homologs - none -
fig|6666666.229900.peg.1844 CDS AJME02000099.1 46552 45587 -1 - 966 tRNA(Cytosine32)-2-thiocytidine synthetase CBSS-326442.4.peg.1852;
tRNA modification Bacteria
fig|6666666.229900.peg.1845 CDS AJME02000099.1 46693 47109 1 + 417 putative membrane protein - none -
fig|6666666.229900.peg.1846 CDS AJME02000099.1 49211 47199 -2 - 2013 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins Ton and Tol transport systems
fig|6666666.229900.peg.1847 CDS AJME02000099.1 49710 49213 -3 - 498 FIG00697418: hypothetical protein - none -
fig|6666666.229900.peg.1848 CDS AJME02000099.1 49921 50922 1 + 1002 ABC transporter, solute-binding protein - none -
fig|6666666.229900.peg.1849 CDS AJME02000099.1 50922 51935 3 + 1014 Vitamin B12 ABC transporter, permease component BtuC - none -
fig|6666666.229900.peg.1850 CDS AJME02000099.1 51932 52681 2 + 750 ABC transporter ATP-binding protein - none -
fig|6666666.229900.peg.1851 CDS AJME02000099.1 52776 55172 3 + 2397 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins Ton and Tol transport systems
fig|6666666.229900.peg.1852 CDS AJME02000099.1 55501 55292 -1 - 210 Molybdate-binding domain of ModE Molybdenum cofactor biosynthesis
fig|6666666.229900.peg.1853 CDS AJME02000099.1 56618 55584 -2 - 1035 FIG00362752: hypothetical protein - none -
fig|6666666.229900.peg.1854 CDS AJME02000099.1 57425 56631 -2 - 795 Glutathione synthetase (EC 6.3.2.3) Cluster containing Glutathione synthetase;
Glutathione: Biosynthesis and gamma-glutamyl cycle;
Heat shock dnaK gene cluster extended
fig|6666666.229900.peg.1855 CDS AJME02000099.1 58432 57425 -1 - 1008 Vitamin B12 ABC transporter, permease component BtuC - none -
fig|6666666.229900.peg.1856 CDS AJME02000099.1 58854 58624 -3 - 231 hypothetical protein - none -
fig|6666666.229900.peg.1857 CDS AJME02000099.1 59227 59484 1 + 258 Phage tail fibers Phage tail fiber proteins
fig|6666666.229900.peg.1858 CDS AJME02000099.1 59484 59747 3 + 264 Phage tail fibers Phage tail fiber proteins
fig|6666666.229900.peg.1859 CDS AJME02000100.1 199 585 1 + 387 Ribosome-binding factor A CBSS-138119.3.peg.2719;
NusA-TFII Cluster;
Translation initiation factors bacterial
fig|6666666.229900.peg.1860 CDS AJME02000100.1 585 1505 3 + 921 tRNA pseudouridine synthase B (EC 4.2.1.70) CBSS-138119.3.peg.2719;
RNA pseudouridine syntheses;
Riboflavin, FMN and FAD metabolism in plants;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229900.peg.1861 CDS AJME02000100.1 1693 1547 -1 - 147 hypothetical protein - none -
fig|6666666.229900.peg.1862 CDS AJME02000100.1 2403 1792 -3 - 612 hypothetical protein - none -
fig|6666666.229900.peg.1863 CDS AJME02000100.1 3717 2530 -3 - 1188 Tyrosyl-tRNA synthetase (EC 6.1.1.1) tRNA aminoacylation, Tyr
fig|6666666.229900.peg.1864 CDS AJME02000100.1 4744 3965 -1 - 780 Sugar/maltose fermentation stimulation protein homolog Fermentations: Mixed acid
fig|6666666.229900.peg.1865 CDS AJME02000100.1 4983 6518 3 + 1536 NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2) Phosphate metabolism
fig|6666666.229900.peg.1866 CDS AJME02000100.1 7481 7921 2 + 441 NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) Phosphate metabolism
fig|6666666.229900.peg.1867 CDS AJME02000100.1 8102 8344 2 + 243 DNA-damage-inducible protein d - none -
fig|6666666.229900.peg.1868 CDS AJME02000100.1 8434 8315 -1 - 120 hypothetical protein - none -
fig|6666666.229900.peg.1869 CDS AJME02000100.1 8943 9791 3 + 849 filamentation induced by cAMP protein Fic-like protein - none -
fig|6666666.229900.peg.1870 CDS AJME02000101.1 1092 124 -3 - 969 FIG002813: LPPG:FO 2-phospho-L-lactate transferase like, CofD-like - none -
fig|6666666.229900.peg.1871 CDS AJME02000101.1 1450 2463 1 + 1014 Molybdenum cofactor biosynthesis protein MoaA Molybdenum cofactor biosynthesis;
ar-104-EC Molybdenum cofactor biosynthesis moaABCDE
fig|6666666.229900.peg.1872 CDS AJME02000101.1 2516 2998 2 + 483 Molybdenum cofactor biosynthesis protein MoaC Molybdenum cofactor biosynthesis;
ar-104-EC Molybdenum cofactor biosynthesis moaABCDE
fig|6666666.229900.peg.1873 CDS AJME02000101.1 2998 3243 1 + 246 Molybdenum cofactor biosynthesis protein MoaD Molybdenum cofactor biosynthesis;
ar-104-EC Molybdenum cofactor biosynthesis moaABCDE
fig|6666666.229900.peg.1874 CDS AJME02000101.1 3244 3699 1 + 456 Molybdenum cofactor biosynthesis protein MoaE Molybdenum cofactor biosynthesis;
ar-104-EC Molybdenum cofactor biosynthesis moaABCDE
fig|6666666.229900.peg.1875 CDS AJME02000101.1 4348 4539 1 + 192 Stringent starvation protein A Carbon Starvation
fig|6666666.229900.peg.1876 CDS AJME02000101.1 4551 5012 3 + 462 Stringent starvation protein B Carbon Starvation
fig|6666666.229900.peg.1877 CDS AJME02000101.1 6578 5175 -2 - 1404 Asparaginyl-tRNA synthetase (EC 6.1.1.22) tRNA aminoacylation, Asp and Asn
fig|6666666.229900.peg.1878 CDS AJME02000101.1 6774 8003 3 + 1230 Mlc, transcriptional repressor of MalT (the transcriptional activator of maltose regulon) and manXYZ operon Maltose and Maltodextrin Utilization
fig|6666666.229900.peg.1879 CDS AJME02000101.1 8080 8808 1 + 729 Dethiobiotin synthetase (EC 6.3.3.3) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229900.peg.1880 CDS AJME02000101.1 9632 8898 -2 - 735 Autoinducer 2 (AI-2) kinase LsrK (EC 2.7.1.-) Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229900.peg.1881 CDS AJME02000101.1 9796 9656 -1 - 141 Autoinducer 2 (AI-2) kinase LsrK (EC 2.7.1.-) Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229900.peg.1882 CDS AJME02000101.1 16970 16017 -2 - 954 LsrR, transcriptional repressor of lsr operon Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229900.peg.1883 CDS AJME02000101.1 17226 18716 3 + 1491 Autoinducer 2 (AI-2) ABC transport system, fused AI2 transporter subunits and ATP-binding component Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229900.peg.1884 CDS AJME02000101.1 18752 19783 2 + 1032 Autoinducer 2 (AI-2) ABC transport system, membrane channel protein LsrC Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229900.peg.1885 CDS AJME02000101.1 19797 20801 3 + 1005 Autoinducer 2 (AI-2) ABC transport system, membrane channel protein LsrD Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229900.peg.1886 CDS AJME02000101.1 20826 21923 3 + 1098 Autoinducer 2 (AI-2) ABC transport system, periplasmic AI-2 binding protein LsrB Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229900.peg.1887 CDS AJME02000101.1 21942 22820 3 + 879 Autoinducer 2 (AI-2) aldolase LsrF (EC 4.2.1.-) Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229900.peg.1888 CDS AJME02000101.1 22853 23155 2 + 303 Autoinducer 2 (AI-2) modifying protein LsrG Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229900.peg.1889 CDS AJME02000101.1 24665 23259 -2 - 1407 Pyruvate kinase (EC 2.7.1.40) Entner-Doudoroff Pathway;
Glycerate metabolism;
Glycolysis and Gluconeogenesis;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229900.peg.1890 CDS AJME02000101.1 25940 24951 -2 - 990 Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) Ribonucleotide reduction
fig|6666666.229900.peg.1891 CDS AJME02000101.1 27756 26071 -3 - 1686 Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) Ribonucleotide reduction
fig|6666666.229900.peg.1892 CDS AJME02000101.1 28838 28032 -2 - 807 Tryptophan synthase alpha chain (EC 4.2.1.20) Auxin biosynthesis;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229900.peg.1893 CDS AJME02000101.1 30034 28841 -1 - 1194 Tryptophan synthase beta chain (EC 4.2.1.20) Auxin biosynthesis;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229900.peg.1894 CDS AJME02000101.1 30811 30044 -1 - 768 3-hydroxypropionate dehydrogenase (EC 1.1.1.298) - none -
fig|6666666.229900.peg.1895 CDS AJME02000101.1 30844 30975 1 + 132 hypothetical protein - none -
fig|6666666.229900.peg.1896 CDS AJME02000101.1 31474 33918 1 + 2445 Outer membrane receptor for lactoferrin or transferrin, TonB-dependent protein A - none -
fig|6666666.229900.peg.1897 CDS AJME02000101.1 35626 34322 -1 - 1305 Oxaloacetate decarboxylase beta chain (EC 4.1.1.3) Na+ translocating decarboxylases and related biotin-dependent enzymes;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229900.peg.1898 CDS AJME02000101.1 37433 35637 -2 - 1797 Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3) Na+ translocating decarboxylases and related biotin-dependent enzymes;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229900.peg.1899 CDS AJME02000101.1 37715 37449 -2 - 267 Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3) Na+ translocating decarboxylases and related biotin-dependent enzymes;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229900.peg.1900 CDS AJME02000101.1 38921 38646 -2 - 276 [NiFe] hydrogenase metallocenter assembly protein HybG G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229900.peg.1901 CDS AJME02000101.1 40809 39379 -3 - 1431 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24) Auxin biosynthesis;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis;
Tryptophan synthesis
fig|6666666.229900.peg.1902 CDS AJME02000101.1 41096 40818 -2 - 279 HigA protein (antitoxin to HigB) Toxin-antitoxin replicon stabilization systems
fig|6666666.229900.peg.1903 CDS AJME02000101.1 41384 41106 -2 - 279 HigB toxin protein Toxin-antitoxin replicon stabilization systems
fig|6666666.229900.peg.1904 CDS AJME02000101.1 42480 41479 -3 - 1002 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) Auxin biosynthesis;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229900.peg.1905 CDS AJME02000101.1 42884 42492 -2 - 393 putative - none -
fig|6666666.229900.peg.1906 CDS AJME02000101.1 43548 42958 -3 - 591 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229900.peg.1907 CDS AJME02000101.1 45106 43559 -1 - 1548 Anthranilate synthase, aminase component (EC 4.1.3.27) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229900.peg.1908 CDS AJME02000101.1 45826 45272 -1 - 555 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC 3.1.3.45) KDO2-Lipid A biosynthesis
fig|6666666.229900.peg.1909 CDS AJME02000101.1 46761 45826 -3 - 936 Arabinose 5-phosphate isomerase (EC 5.3.1.13) KDO2-Lipid A biosynthesis
fig|6666666.229900.peg.1910 CDS AJME02000101.1 48625 49524 1 + 900 Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20) tRNA aminoacylation, Phe
fig|6666666.229900.peg.1911 CDS AJME02000101.1 49544 51934 2 + 2391 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) tRNA aminoacylation, Phe
fig|6666666.229900.peg.1912 CDS AJME02000101.1 51938 52234 2 + 297 Integration host factor alpha subunit DNA structural proteins, bacterial
fig|6666666.229900.peg.1913 CDS AJME02000101.1 52406 52774 2 + 369 Probable lipoprotein nlpC precursor - none -
fig|6666666.229900.peg.1914 CDS AJME02000101.1 53294 52941 -2 - 354 hypothetical protein - none -
fig|6666666.229900.peg.1915 CDS AJME02000102.1 43 750 1 + 708 hypothetical protein - none -
fig|6666666.229900.peg.1916 CDS AJME02000102.1 760 1413 1 + 654 hypothetical protein - none -
fig|6666666.229900.peg.1917 CDS AJME02000102.1 2156 1482 -2 - 675 3-keto-L-gulonate 6-phosphate decarboxylase L-ascorbate utilization (and related gene clusters)
fig|6666666.229900.peg.1918 CDS AJME02000102.1 2694 2233 -3 - 462 Ascorbate-specific PTS system, EIIA component (EC 2.7.1.-) L-ascorbate utilization (and related gene clusters)
fig|6666666.229900.peg.1919 CDS AJME02000102.1 4521 2749 -3 - 1773 Ascorbate-specific PTS system, EIIC component L-ascorbate utilization (and related gene clusters)
fig|6666666.229900.peg.1920 CDS AJME02000102.1 4867 5958 1 + 1092 Probable L-ascorbate-6-phosphate lactonase UlaG (EC 3.1.1.-) (L-ascorbate utilization protein G) L-ascorbate utilization (and related gene clusters)
fig|6666666.229900.peg.1921 CDS AJME02000102.1 6050 6799 2 + 750 Ascorbate utilization transcriptional regulator UlaR, HTH-type L-ascorbate utilization (and related gene clusters)
fig|6666666.229900.peg.1922 CDS AJME02000102.1 6840 7700 3 + 861 L-xylulose 5-phosphate 3-epimerase (EC 5.1.3.-) L-ascorbate utilization (and related gene clusters)
fig|6666666.229900.peg.1923 CDS AJME02000102.1 7694 8389 2 + 696 L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) L-ascorbate utilization (and related gene clusters)
fig|6666666.229900.peg.1924 CDS AJME02000102.1 9058 10014 1 + 957 hypothetical protein - none -
fig|6666666.229900.peg.1925 CDS AJME02000102.1 10065 11201 3 + 1137 hypothetical protein - none -
fig|6666666.229900.peg.1926 CDS AJME02000102.1 11244 12188 3 + 945 hypothetical protein - none -
fig|6666666.229900.peg.1927 CDS AJME02000102.1 12437 12877 2 + 441 hypothetical protein - none -
fig|6666666.229900.peg.1928 CDS AJME02000102.1 12877 13743 1 + 867 hypothetical protein - none -
fig|6666666.229900.peg.1929 CDS AJME02000102.1 15027 13813 -3 - 1215 Tyrosine-specific transport protein - none -
fig|6666666.229900.peg.1930 CDS AJME02000102.1 15141 15278 3 + 138 hypothetical protein - none -
fig|6666666.229900.peg.1931 CDS AJME02000102.1 15322 15516 1 + 195 Beta-galactosidase (EC 3.2.1.23) Galactosylceramide and Sulfatide metabolism;
Lactose and Galactose Uptake and Utilization;
Lactose utilization
fig|6666666.229900.peg.1932 CDS AJME02000102.1 16043 15780 -2 - 264 Glutaredoxin 1 Glutaredoxins;
Glutathione: Redox cycle
fig|6666666.229900.peg.1933 CDS AJME02000102.1 16170 16904 3 + 735 Oxygen-insensitive NADPH nitroreductase (EC 1.-.-.-) - none -
fig|6666666.229900.peg.1934 CDS AJME02000102.1 16923 17828 3 + 906 Ribosomal protein S6 glutaminyl transferase Ribosome biogenesis bacterial
fig|6666666.229900.peg.1935 CDS AJME02000102.1 18729 18124 -3 - 606 FIG026291: Hypothetical periplasmic protein - none -
fig|6666666.229900.peg.1936 CDS AJME02000102.1 20227 18833 -1 - 1395 Fumarate hydratase class II (EC 4.2.1.2) TCA Cycle
fig|6666666.229900.peg.1937 CDS AJME02000102.1 20437 20886 1 + 450 DNA polymerase III chi subunit (EC 2.7.7.7) CBSS-208964.1.peg.3826
fig|6666666.229900.peg.1938 CDS AJME02000102.1 20925 21239 3 + 315 RNA-binding domain protein - none -
fig|6666666.229900.peg.1939 CDS AJME02000102.1 21311 24175 2 + 2865 Valyl-tRNA synthetase (EC 6.1.1.9) CBSS-208964.1.peg.3826;
tRNA aminoacylation, Val
fig|6666666.229900.peg.1940 CDS AJME02000102.1 24242 25135 2 + 894 hypothetical protein - none -
fig|6666666.229900.peg.1941 CDS AJME02000102.1 25374 25132 -3 - 243 HipA protein Persister Cells
fig|6666666.229900.peg.1942 CDS AJME02000102.1 25616 25795 2 + 180 hypothetical protein - none -
fig|6666666.229900.peg.1943 CDS AJME02000102.1 26030 25749 -2 - 282 HipB protein Persister Cells
fig|6666666.229900.peg.1944 CDS AJME02000102.1 27688 26174 -1 - 1515 Inner membrane component of tripartite multidrug resistance system Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria
fig|6666666.229900.peg.1945 CDS AJME02000102.1 28861 27701 -1 - 1161 Membrane fusion component of tripartite multidrug resistance system Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria
fig|6666666.229900.peg.1946 CDS AJME02000102.1 29069 29551 2 + 483 Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1) Oxidative stress;
Oxidative stress;
Oxidative stress
fig|6666666.229900.peg.1947 CDS AJME02000102.1 31649 29670 -2 - 1980 Exoribonuclease II (EC 3.1.13.1) RNA processing and degradation, bacterial
fig|6666666.229900.peg.1948 CDS AJME02000102.1 32510 31722 -2 - 789 Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9) Fatty Acid Biosynthesis FASII
fig|6666666.229900.peg.1949 CDS AJME02000102.1 33458 32601 -2 - 858 FIG137478: Hypothetical protein YbgI - none -
fig|6666666.229900.peg.1950 CDS AJME02000102.1 34255 33581 -1 - 675 Queuosine Biosynthesis QueE Radical SAM Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229900.peg.1951 CDS AJME02000102.1 34641 34216 -3 - 426 Queuosine biosynthesis QueD, PTPS-I Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229900.peg.1952 CDS AJME02000102.1 35196 35942 3 + 747 CRISPR-associated protein Cas1 CRISPRs
fig|6666666.229900.peg.1953 CDS AJME02000102.1 35939 39226 2 + 3288 CRISPR-associated helicase Cas3, Yersinia-type CRISPRs
fig|6666666.229900.peg.1954 CDS AJME02000102.1 39835 39272 -1 - 564 CRISPR-associated protein, Csy4 family CRISPRs
fig|6666666.229900.peg.1955 CDS AJME02000102.1 40848 39838 -3 - 1011 CRISPR-associated protein, Csy3 family CRISPRs
fig|6666666.229900.peg.1956 CDS AJME02000102.1 41807 40848 -2 - 960 CRISPR-associated protein, Csy2 family CRISPRs
fig|6666666.229900.peg.1957 CDS AJME02000102.1 43163 41817 -2 - 1347 CRISPR-associated protein, Csy1 family CRISPRs
fig|6666666.229900.peg.1958 CDS AJME02000102.1 43686 43573 -3 - 114 hypothetical protein - none -
fig|6666666.229900.peg.1959 CDS AJME02000102.1 43903 45411 1 + 1509 Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27) Inositol catabolism
fig|6666666.229900.peg.1960 CDS AJME02000102.1 45702 46640 3 + 939 Myo-inositol 2-dehydrogenase 2 (EC 1.1.1.18) Inositol catabolism
fig|6666666.229900.peg.1961 CDS AJME02000102.1 46942 47880 1 + 939 Inositol transport system sugar-binding protein Inositol catabolism
fig|6666666.229900.peg.1962 CDS AJME02000102.1 47964 48896 3 + 933 Inositol transport system sugar-binding protein Inositol catabolism
fig|6666666.229900.peg.1963 CDS AJME02000102.1 48965 50470 2 + 1506 Inositol transport system ATP-binding protein Inositol catabolism
fig|6666666.229900.peg.1964 CDS AJME02000102.1 50521 51474 1 + 954 Inositol transport system permease protein Inositol catabolism
fig|6666666.229900.peg.1965 CDS AJME02000102.1 54179 51558 -2 - 2622 Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) 5-FCL-like protein;
Butanol Biosynthesis;
Butanol Biosynthesis;
Fermentations: Lactate;
Fermentations: Mixed acid;
Fermentations: Mixed acid;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229900.peg.1966 CDS AJME02000102.1 54309 54449 3 + 141 hypothetical protein - none -
fig|6666666.229900.peg.1967 CDS AJME02000102.1 57156 54529 -3 - 2628 Iron siderophore receptor protein - none -
fig|6666666.229900.peg.1968 CDS AJME02000102.1 58341 57376 -3 - 966 Protein-export membrane protein SecF (TC 3.A.5.1.1) CBSS-211586.1.peg.2832
fig|6666666.229900.peg.1969 CDS AJME02000102.1 60208 58358 -1 - 1851 Protein-export membrane protein SecD (TC 3.A.5.1.1) CBSS-211586.1.peg.2832
fig|6666666.229900.peg.1970 CDS AJME02000102.1 60538 60239 -1 - 300 Preprotein translocase subunit YajC (TC 3.A.5.1.1) CBSS-211586.1.peg.2832
fig|6666666.229900.peg.1971 CDS AJME02000102.1 61981 60830 -1 - 1152 tRNA-guanine transglycosylase (EC 2.4.2.29) CBSS-211586.1.peg.2832;
Queuosine-Archaeosine Biosynthesis;
Scaffold proteins for [4Fe-4S] cluster assembly (MRP family);
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229900.peg.1972 CDS AJME02000102.1 62450 63586 2 + 1137 Periplasmic aromatic amino acid aminotransferase beta precursor (EC 2.6.1.57) Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229900.peg.1973 CDS AJME02000102.1 64721 63630 -2 - 1092 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) CBSS-211586.1.peg.2832;
Queuosine-Archaeosine Biosynthesis;
Scaffold proteins for [4Fe-4S] cluster assembly (MRP family);
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229900.peg.1974 CDS AJME02000102.1 65351 64812 -2 - 540 hypothetical protein - none -
fig|6666666.229900.peg.1975 CDS AJME02000102.1 65737 65468 -1 - 270 ABC-type Fe3+-hydroxamate transport system, periplasmic component - none -
fig|6666666.229900.peg.1976 CDS AJME02000102.1 69021 67855 -3 - 1167 FIG00698381: hypothetical protein - none -
fig|6666666.229900.peg.1977 CDS AJME02000102.1 69510 69079 -3 - 432 FIG00698381: hypothetical protein - none -
fig|6666666.229900.peg.1978 CDS AJME02000102.1 70630 69557 -1 - 1074 FIG00697578: hypothetical protein - none -
fig|6666666.229900.peg.1979 CDS AJME02000102.1 70926 70642 -3 - 285 hypothetical protein - none -
fig|6666666.229900.peg.1980 CDS AJME02000102.1 71297 71067 -2 - 231 transcriptional regulator, putative - none -
fig|6666666.229900.peg.1981 CDS AJME02000103.1 102 812 3 + 711 FIG00698721: hypothetical protein - none -
fig|6666666.229900.peg.1982 CDS AJME02000104.1 50 361 2 + 312 hypothetical protein - none -
fig|6666666.229900.peg.1983 CDS AJME02000104.1 372 3278 3 + 2907 hypothetical protein - none -
fig|6666666.229900.peg.1984 CDS AJME02000104.1 3605 4471 2 + 867 hypothetical protein - none -
fig|6666666.229900.peg.1985 CDS AJME02000106.1 10 471 1 + 462 hypothetical protein - none -
fig|6666666.229900.peg.1986 CDS AJME02000107.1 1675 221 -1 - 1455 Catalase (EC 1.11.1.6) Oxidative stress;
Protection from Reactive Oxygen Species
fig|6666666.229900.peg.1987 CDS AJME02000107.1 3514 2165 -1 - 1350 NADP-specific glutamate dehydrogenase (EC 1.4.1.4) Arginine and Ornithine Degradation;
Glutamate dehydrogenases;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Proline Synthesis
fig|6666666.229900.peg.1988 CDS AJME02000107.1 5192 3816 -2 - 1377 Argininosuccinate lyase (EC 4.3.2.1) - none -
fig|6666666.229900.peg.1989 CDS AJME02000107.1 6093 5305 -3 - 789 Mannosyltransferase OCH1 and related enzymes - none -
fig|6666666.229900.peg.1990 CDS AJME02000107.1 6567 8012 3 + 1446 Glutamyl-tRNA synthetase (EC 6.1.1.17) Heme and Siroheme Biosynthesis;
tRNA aminoacylation, Glu and Gln
fig|6666666.229900.peg.1991 CDS AJME02000107.1 8458 8667 1 + 210 Cold shock protein CspA Cold shock, CspA family of proteins
fig|6666666.229900.peg.1992 CDS AJME02000107.1 9698 8766 -2 - 933 Ribokinase (EC 2.7.1.15) D-ribose utilization;
Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.229900.peg.1993 CDS AJME02000107.1 10652 9780 -2 - 873 Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229900.peg.1994 CDS AJME02000107.1 11639 10674 -2 - 966 Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229900.peg.1995 CDS AJME02000107.1 13144 11636 -1 - 1509 Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229900.peg.1996 CDS AJME02000107.1 13574 13155 -2 - 420 Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229900.peg.1997 CDS AJME02000107.1 13794 14393 3 + 600 Adenosine (5@1)-pentaphospho-(5@1@1)-adenosine pyrophosphohydrolase (EC 3.6.1.-) CBSS-224911.1.peg.435;
CBSS-364106.7.peg.3204;
Nudix proteins (nucleoside triphosphate hydrolases);
Phosphoglycerate mutase protein family
fig|6666666.229900.peg.1998 CDS AJME02000107.1 14396 15193 2 + 798 Protein of unknown function DUF81 - none -
fig|6666666.229900.peg.1999 CDS AJME02000107.1 15202 15999 1 + 798 Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-) Lipoprotein Biosynthesis
fig|6666666.229900.peg.2000 CDS AJME02000107.1 15996 16847 3 + 852 Thymidylate synthase (EC 2.1.1.45) Folate Biosynthesis;
pyrimidine conversions
fig|6666666.229900.peg.2001 CDS AJME02000107.1 17172 17699 3 + 528 tRNA-specific adenosine-34 deaminase (EC 3.5.4.-) tRNA modification Bacteria;
tRNA processing;
tRNAmodification position 34
fig|6666666.229900.peg.2002 CDS AJME02000107.1 18323 17925 -2 - 399 hypothetical protein - none -
fig|6666666.229900.peg.2003 CDS AJME02000107.1 19752 18634 -3 - 1119 FOG: TPR repeat, SEL1 subfamily - none -
fig|6666666.229900.peg.2004 CDS AJME02000107.1 20837 19788 -2 - 1050 Probable phospholipase protein - none -
fig|6666666.229900.peg.2005 CDS AJME02000107.1 22339 21437 -1 - 903 hypothetical protein - none -
fig|6666666.229900.peg.2006 CDS AJME02000108.1 626 69 -2 - 558 D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase (EC 3.1.1.-) Capsular heptose biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.229900.peg.2007 CDS AJME02000108.1 822 1814 3 + 993 Methionine ABC transporter ATP-binding protein Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229900.peg.2008 CDS AJME02000110.1 675 487 -3 - 189 VgrG-3 protein - none -
fig|6666666.229900.peg.2009 CDS AJME02000110.1 1056 1895 3 + 840 Predicted transcriptional regulator of the myo-inositol catabolic operon Inositol catabolism
fig|6666666.229900.peg.2010 CDS AJME02000110.1 3668 1932 -2 - 1737 5-keto-2-deoxygluconokinase (EC 2.7.1.92) / uncharacterized domain Inositol catabolism;
Inositol catabolism
fig|6666666.229900.peg.2011 CDS AJME02000110.1 4136 6082 2 + 1947 Epi-inositol hydrolase (EC 3.7.1.-) Inositol catabolism
fig|6666666.229900.peg.2012 CDS AJME02000110.1 6137 7033 2 + 897 Inosose dehydratase (EC 4.2.1.44) Inositol catabolism
fig|6666666.229900.peg.2013 CDS AJME02000110.1 7036 8046 1 + 1011 Myo-inositol 2-dehydrogenase 1 (EC 1.1.1.18) Inositol catabolism
fig|6666666.229900.peg.2014 CDS AJME02000110.1 8651 8106 -2 - 546 Mannitol operon repressor Mannitol Utilization
fig|6666666.229900.peg.2015 CDS AJME02000110.1 9877 8729 -1 - 1149 Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17) Mannitol Utilization
fig|6666666.229900.peg.2016 CDS AJME02000110.1 11835 9955 -3 - 1881 PTS system, mannitol-specific IIC component (EC 2.7.1.69) / PTS system, mannitol-specific IIB component (EC 2.7.1.69) / PTS system, mannitol-specific IIA component (EC 2.7.1.69) Mannitol Utilization;
Mannitol Utilization;
Mannitol Utilization
fig|6666666.229900.peg.2017 CDS AJME02000110.1 13679 12246 -2 - 1434 Microcin H47 secretion protein - none -
fig|6666666.229900.peg.2018 CDS AJME02000110.1 15817 13694 -1 - 2124 Methionine ABC transporter ATP-binding protein Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229900.peg.2019 CDS AJME02000110.1 19053 15886 -3 - 3168 bifunctional hemolysin-adenylate cyclase precursor cAMP signaling in bacteria
fig|6666666.229900.peg.2020 CDS AJME02000110.1 19572 19066 -3 - 507 RTX toxin activating lysine-acyltransferase (EC 2.3.1.-) - none -
fig|6666666.229900.peg.2021 CDS AJME02000110.1 21941 20679 -2 - 1263 Serine hydroxymethyltransferase (EC 2.1.2.1) 5-FCL-like protein;
Glycine Biosynthesis;
Glycine and Serine Utilization;
Serine-glyoxylate cycle;
Serine Biosynthesis;
YrdC-YciO-Sua5 protein family
fig|6666666.229900.peg.2022 CDS AJME02000110.1 22618 22076 -1 - 543 hypothetical protein - none -
fig|6666666.229900.peg.2023 CDS AJME02000110.1 22996 22856 -1 - 141 hypothetical protein - none -
fig|6666666.229900.peg.2024 CDS AJME02000110.1 23148 22999 -3 - 150 hypothetical protein - none -
fig|6666666.229900.peg.2025 CDS AJME02000110.1 24239 23235 -2 - 1005 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) RNA methylation
fig|6666666.229900.peg.2026 CDS AJME02000110.1 24295 24744 1 + 450 DNA polymerase III psi subunit (EC 2.7.7.7) - none -
fig|6666666.229900.peg.2027 CDS AJME02000110.1 24754 25197 1 + 444 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Ribosome biogenesis bacterial;
YrdC-YciO-Sua5 protein family
fig|6666666.229900.peg.2028 CDS AJME02000110.1 28588 25199 -1 - 3390 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) DNA repair, bacterial RecBCD pathway
fig|6666666.229900.peg.2029 CDS AJME02000110.1 28936 28634 -1 - 303 FIG00696353: hypothetical protein - none -
fig|6666666.229900.peg.2030 CDS AJME02000110.1 29606 28911 -2 - 696 FIG00696574: hypothetical protein - none -
fig|6666666.229900.peg.2031 CDS AJME02000110.1 30319 29603 -1 - 717 Type II secretory pathway, component PulJ - none -
fig|6666666.229900.peg.2032 CDS AJME02000110.1 30950 30333 -2 - 618 Type II secretory pathway, pseudopilin PulG - none -
fig|6666666.229900.peg.2033 CDS AJME02000110.1 31923 31456 -3 - 468 18K peptidoglycan-associated outer membrane lipoprotein; Peptidoglycan-associated lipoprotein precursor; Outer membrane protein P6; OmpA/MotB precursor Ton and Tol transport systems
fig|6666666.229900.peg.2034 CDS AJME02000110.1 33218 31938 -2 - 1281 tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins Ton and Tol transport systems
fig|6666666.229900.peg.2035 CDS AJME02000110.1 34479 33253 -3 - 1227 TolA protein Ton and Tol transport systems
fig|6666666.229900.peg.2036 CDS AJME02000110.1 34918 34496 -1 - 423 Tol biopolymer transport system, TolR protein Ton and Tol transport systems
fig|6666666.229900.peg.2037 CDS AJME02000110.1 35693 35004 -2 - 690 MotA/TolQ/ExbB proton channel family protein Ton and Tol transport systems
fig|6666666.229900.peg.2038 CDS AJME02000110.1 36127 35723 -1 - 405 4-hydroxybenzoyl-CoA thioesterase family active site Ton and Tol transport systems
fig|6666666.229900.peg.2039 CDS AJME02000110.1 37781 36645 -2 - 1137 Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229900.peg.2040 CDS AJME02000110.1 39265 37796 -1 - 1470 Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229900.peg.2041 CDS AJME02000110.1 39813 40124 3 + 312 Chromosome segregation ATPases - none -
fig|6666666.229900.peg.2042 CDS AJME02000110.1 41191 40178 -1 - 1014 Holliday junction DNA helicase RuvB RuvABC plus a hypothetical
fig|6666666.229900.peg.2043 CDS AJME02000110.1 41820 41206 -3 - 615 Holliday junction DNA helicase RuvA RuvABC plus a hypothetical
fig|6666666.229900.peg.2044 CDS AJME02000110.1 42456 41884 -3 - 573 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) RuvABC plus a hypothetical
fig|6666666.229900.peg.2045 CDS AJME02000110.1 42922 42512 -1 - 411 excinuclease ABC subunit A - none -
fig|6666666.229900.peg.2046 CDS AJME02000110.1 43674 42934 -3 - 741 FIG000859: hypothetical protein YebC Riboflavin, FMN and FAD metabolism in plants;
RuvABC plus a hypothetical
fig|6666666.229900.peg.2047 CDS AJME02000110.1 44079 43708 -3 - 372 Dihydroneopterin triphosphate pyrophosphohydrolase type 2 (nudB) Folate Biosynthesis
fig|6666666.229900.peg.2048 CDS AJME02000110.1 45528 44260 -3 - 1269 Mn2+ and Fe2+ transporters of the NRAMP family - none -
fig|6666666.229900.peg.2049 CDS AJME02000112.1 337 50 -1 - 288 hypothetical protein - none -
fig|6666666.229900.peg.2050 CDS AJME02000113.1 548 315 -2 - 234 hypothetical protein - none -
fig|6666666.229900.peg.2051 CDS AJME02000114.1 307 1293 1 + 987 Fructose repressor FruR, LacI family Fructose utilization
fig|6666666.229900.peg.2052 CDS AJME02000114.1 1990 1277 -1 - 714 SanA protein - none -
fig|6666666.229900.peg.2053 CDS AJME02000114.1 2183 3286 2 + 1104 Homoserine O-acetyltransferase (EC 2.3.1.31) Methionine Biosynthesis
fig|6666666.229900.peg.2054 CDS AJME02000114.1 3593 4591 2 + 999 Purine nucleotide synthesis repressor Purine nucleotide synthesis regulator
fig|6666666.229900.peg.2055 CDS AJME02000114.1 4894 5028 1 + 135 hypothetical protein - none -
fig|6666666.229900.peg.2056 CDS AJME02000114.1 5061 5381 3 + 321 putative cytoplasmic protein - none -
fig|6666666.229900.peg.2057 CDS AJME02000114.1 6323 5496 -2 - 828 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229900.peg.2058 CDS AJME02000114.1 7378 6407 -1 - 972 Cys regulon transcriptional activator CysB Cysteine Biosynthesis;
LysR-family proteins in Escherichia coli
fig|6666666.229900.peg.2059 CDS AJME02000114.1 8377 7409 -1 - 969 Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70) RNA pseudouridine syntheses
fig|6666666.229900.peg.2060 CDS AJME02000114.1 9055 8432 -1 - 624 Hypothetical YciO protein, TsaC/YrdC paralog YrdC-YciO-Sua5 protein family
fig|6666666.229900.peg.2061 CDS AJME02000114.1 10260 9136 -3 - 1125 Chorismate mutase I (EC 5.4.99.5) / Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) Chorismate Synthesis;
Chorismate Synthesis;
Phenylalanine and Tyrosine Branches from Chorismate;
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229900.peg.2062 CDS AJME02000114.1 12181 10301 -1 - 1881 Signal peptide peptidase SppA (EC 3.4.21.-) - none -
fig|6666666.229900.peg.2063 CDS AJME02000114.1 12305 12859 2 + 555 FIG002003: Protein YdjA - none -
fig|6666666.229900.peg.2064 CDS AJME02000114.1 13084 13203 1 + 120 hypothetical protein - none -
fig|6666666.229900.peg.2065 CDS AJME02000114.1 14770 13289 -1 - 1482 Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4) 5-FCL-like protein;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate;
TCA Cycle;
TCA Cycle
fig|6666666.229900.peg.2066 CDS AJME02000114.1 16477 14807 -1 - 1671 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) 5-FCL-like protein;
Dehydrogenase complexes;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229900.peg.2067 CDS AJME02000114.1 19163 16506 -2 - 2658 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) 5-FCL-like protein;
Dehydrogenase complexes;
Methionine Degradation;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229900.peg.2068 CDS AJME02000114.1 19542 20417 3 + 876 Tellurite resistance protein TehB Tellurite resistance: Chromosomal determinants
fig|6666666.229900.peg.2069 CDS AJME02000114.1 23284 20570 -1 - 2715 Transcriptional activator of maltose regulon, MalT Maltose and Maltodextrin Utilization;
Maltose utilization cluster
fig|6666666.229900.peg.2070 CDS AJME02000114.1 23453 25843 2 + 2391 Maltodextrin phosphorylase (EC 2.4.1.1) Glycogen metabolism;
Maltose and Maltodextrin Utilization;
Maltose utilization cluster
fig|6666666.229900.peg.2071 CDS AJME02000114.1 25988 28063 2 + 2076 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) Glycogen metabolism;
Glycogen metabolism cluster;
Maltose and Maltodextrin Utilization;
Maltose utilization cluster
fig|6666666.229900.peg.2072 CDS AJME02000114.1 28140 28021 -3 - 120 hypothetical protein - none -
fig|6666666.229900.peg.2073 CDS AJME02000114.1 28750 28208 -1 - 543 Colicin V production protein - none -
fig|6666666.229900.peg.2074 CDS AJME02000114.1 29135 28929 -2 - 207 FIG00638298: membrane protein YfbV - none -
fig|6666666.229900.peg.2075 CDS AJME02000114.1 29572 30774 1 + 1203 Acetate kinase (EC 2.7.2.1) CBSS-257314.1.peg.752;
Fermentations: Lactate;
Fermentations: Mixed acid;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229900.peg.2076 CDS AJME02000114.1 30844 32979 1 + 2136 Phosphate acetyltransferase (EC 2.3.1.8) Fermentations: Lactate;
Fermentations: Mixed acid;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229900.peg.2077 CDS AJME02000114.1 33325 33711 1 + 387 hypothetical protein - none -
fig|6666666.229900.peg.2078 CDS AJME02000114.1 34257 33757 -3 - 501 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) Folate Biosynthesis;
Folate biosynthesis cluster
fig|6666666.229900.peg.2079 CDS AJME02000114.1 35716 34250 -1 - 1467 Poly(A) polymerase (EC 2.7.7.19) Polyadenylation bacterial
fig|6666666.229900.peg.2080 CDS AJME02000114.1 36270 35833 -3 - 438 C4-type zinc finger protein, DksA/TraR family - none -
fig|6666666.229900.peg.2081 CDS AJME02000115.1 216 887 3 + 672 Deoxyribose-phosphate aldolase (EC 4.1.2.4) Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.229900.peg.2082 CDS AJME02000115.1 915 1664 3 + 750 Deoxyribose operon repressor, DeoR family Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.229900.peg.2083 CDS AJME02000115.1 1802 2893 2 + 1092 Putative exported protein precursor - none -
fig|6666666.229900.peg.2084 CDS AJME02000115.1 4395 3025 -3 - 1371 N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23) / Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157) Peptidoglycan Biosynthesis;
Peptidoglycan Biosynthesis;
Sialic Acid Metabolism;
Sialic Acid Metabolism;
Transcription repair cluster;
Transcription repair cluster;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229900.peg.2085 CDS AJME02000115.1 4481 5611 2 + 1131 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) Recycling of Peptidoglycan Amino Sugars
fig|6666666.229900.peg.2086 CDS AJME02000115.1 5608 6522 1 + 915 N-acetylmuramic acid 6-phosphate etherase - none -
fig|6666666.229900.peg.2087 CDS AJME02000115.1 6687 7733 3 + 1047 ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1) Polyamine Metabolism
fig|6666666.229900.peg.2088 CDS AJME02000115.1 8222 7794 -2 - 429 ATP synthase epsilon chain (EC 3.6.3.14) F0F1-type ATP synthase
fig|6666666.229900.peg.2089 CDS AJME02000115.1 9637 8264 -1 - 1374 ATP synthase beta chain (EC 3.6.3.14) F0F1-type ATP synthase
fig|6666666.229900.peg.2090 CDS AJME02000115.1 10523 9654 -2 - 870 ATP synthase gamma chain (EC 3.6.3.14) F0F1-type ATP synthase
fig|6666666.229900.peg.2091 CDS AJME02000115.1 12080 10539 -2 - 1542 ATP synthase alpha chain (EC 3.6.3.14) F0F1-type ATP synthase
fig|6666666.229900.peg.2092 CDS AJME02000115.1 12641 12093 -2 - 549 ATP synthase delta chain (EC 3.6.3.14) F0F1-type ATP synthase
fig|6666666.229900.peg.2093 CDS AJME02000115.1 13062 12655 -3 - 408 ATP synthase F0 sector subunit b (EC 3.6.3.14) F0F1-type ATP synthase
fig|6666666.229900.peg.2094 CDS AJME02000115.1 13429 13175 -1 - 255 ATP synthase F0 sector subunit c (EC 3.6.3.14) F0F1-type ATP synthase
fig|6666666.229900.peg.2095 CDS AJME02000115.1 14269 13481 -1 - 789 ATP synthase F0 sector subunit a - none -
fig|6666666.229900.peg.2096 CDS AJME02000115.1 14671 14294 -1 - 378 FIG048548: ATP synthase protein I2 F0F1-type ATP synthase
fig|6666666.229900.peg.2097 CDS AJME02000115.1 15466 14783 -1 - 684 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB Cell Division Subsystem including YidCD;
RNA methylation;
RNA modification and chromosome partitioning cluster
fig|6666666.229900.peg.2098 CDS AJME02000115.1 15821 15459 -2 - 363 Redox-sensing transcriptional regulator QorR NADPH:quinone oxidoreductase 2
fig|6666666.229900.peg.2099 CDS AJME02000115.1 15973 16830 1 + 858 NADPH:quinone oxidoreductase 2 NADPH:quinone oxidoreductase 2
fig|6666666.229900.peg.2100 CDS AJME02000115.1 18991 17102 -1 - 1890 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA Cell Division Subsystem including YidCD;
RNA modification and chromosome partitioning cluster;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229900.peg.2101 CDS AJME02000115.1 19863 19420 -3 - 444 Flavoprotein MioC Flavodoxin
fig|6666666.229900.peg.2102 CDS AJME02000115.1 20138 19920 -2 - 219 FIG074102: hypothetical protein - none -
fig|6666666.229900.peg.2103 CDS AJME02000115.1 20334 21347 3 + 1014 Fructose-1,6-bisphosphatase, GlpX type (EC 3.1.3.11) Glycolysis and Gluconeogenesis
fig|6666666.229900.peg.2104 CDS AJME02000115.1 21789 21385 -3 - 405 hypothetical protein - none -
fig|6666666.229900.peg.2105 CDS AJME02000115.1 21810 21941 3 + 132 hypothetical protein - none -
fig|6666666.229900.peg.2106 CDS AJME02000115.1 22786 21989 -1 - 798 Serine acetyltransferase (EC 2.3.1.30) Cysteine Biosynthesis;
Methionine Biosynthesis
fig|6666666.229900.peg.2107 CDS AJME02000115.1 23802 22789 -3 - 1014 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) Glutaredoxin 3 containing cluster;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229900.peg.2108 CDS AJME02000115.1 24392 23880 -2 - 513 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) Glutaredoxin 3 containing cluster
fig|6666666.229900.peg.2109 CDS AJME02000115.1 24914 24408 -2 - 507 FIG136845: Rhodanese-related sulfurtransferase Glutaredoxin 3 containing cluster
fig|6666666.229900.peg.2110 CDS AJME02000115.1 25175 26497 2 + 1323 Anaerobic C4-dicarboxylate membrane transporter DcuA - none -
fig|6666666.229900.peg.2111 CDS AJME02000115.1 26667 28415 3 + 1749 Transport ATP-binding protein CydD Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229900.peg.2112 CDS AJME02000115.1 28432 30066 1 + 1635 ABC transporter ATP-binding protein - none -
fig|6666666.229900.peg.2113 CDS AJME02000115.1 30797 30177 -2 - 621 Unsaturated fatty acid biosythesis repressor FabR, TetR family - none -
fig|6666666.229900.peg.2114 CDS AJME02000115.1 31708 30809 -1 - 900 Hydrogen peroxide-inducible genes activator LysR-family proteins in Escherichia coli;
LysR-family proteins in Salmonella enterica Typhimurium;
Oxidative stress;
Thioredoxin-disulfide reductase
fig|6666666.229900.peg.2115 CDS AJME02000115.1 31867 32595 1 + 729 Peroxiredoxin family protein/glutaredoxin - none -
fig|6666666.229900.peg.2116 CDS AJME02000115.1 32871 32656 -3 - 216 Protein SlyX - none -
fig|6666666.229900.peg.2117 CDS AJME02000115.1 32966 33691 2 + 726 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase;
Potassium homeostasis
fig|6666666.229900.peg.2118 CDS AJME02000115.1 33771 34439 3 + 669 YheO-like PAS domain - none -
fig|6666666.229900.peg.2119 CDS AJME02000115.1 34443 34820 3 + 378 tRNA 5-methylaminomethyl-2-thiouridine synthase TusD CBSS-326442.4.peg.1852;
Sulfite reduction-associated complex DsrMKJOP and co-clustering genes;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.229900.peg.2120 CDS AJME02000115.1 34817 35179 2 + 363 tRNA 5-methylaminomethyl-2-thiouridine synthase TusC CBSS-326442.4.peg.1852;
Sulfite reduction-associated complex DsrMKJOP and co-clustering genes;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.229900.peg.2121 CDS AJME02000115.1 35179 35469 1 + 291 tRNA 5-methylaminomethyl-2-thiouridine synthase TusB Sulfite reduction-associated complex DsrMKJOP and co-clustering genes;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.229900.peg.2122 CDS AJME02000115.1 36241 35474 -1 - 768 ABC-type polar amino acid transport system, ATPase component CBSS-326442.4.peg.1852
fig|6666666.229900.peg.2123 CDS AJME02000115.1 36973 36251 -1 - 723 L-Cystine ABC transporter, permease protein TcyB - none -
fig|6666666.229900.peg.2124 CDS AJME02000115.1 37736 36957 -2 - 780 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain - none -
fig|6666666.229900.peg.2125 CDS AJME02000115.1 39157 37862 -1 - 1296 Glycine/D-amino acid oxidases (deaminating) - none -
fig|6666666.229900.peg.2126 CDS AJME02000115.1 39248 39126 -2 - 123 hypothetical protein - none -
fig|6666666.229900.peg.2127 CDS AJME02000115.1 40044 39319 -3 - 726 lipoprotein, putative - none -
fig|6666666.229900.peg.2128 CDS AJME02000115.1 40213 40091 -1 - 123 hypothetical protein - none -
fig|6666666.229900.peg.2129 CDS AJME02000115.1 40407 40625 3 + 219 hypothetical protein - none -
fig|6666666.229900.peg.2130 CDS AJME02000115.1 41796 40834 -3 - 963 Lipoate synthase Lipoic acid metabolism;
Lipoic acid synthesis cluster
fig|6666666.229900.peg.2131 CDS AJME02000115.1 42499 41861 -1 - 639 Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase Lipoic acid metabolism;
Lipoic acid synthesis cluster
fig|6666666.229900.peg.2132 CDS AJME02000115.1 42844 42545 -1 - 300 Proposed lipoate regulatory protein YbeD Lipoic acid metabolism;
Lipoic acid synthesis cluster
fig|6666666.229900.peg.2133 CDS AJME02000115.1 44084 42894 -2 - 1191 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) Metallocarboxypeptidases (EC 3.4.17.-);
Murein Hydrolases;
Peptidoglycan Biosynthesis
fig|6666666.229900.peg.2134 CDS AJME02000115.1 44972 44115 -2 - 858 Rare lipoprotein A precursor Peptidoglycan Biosynthesis
fig|6666666.229900.peg.2135 CDS AJME02000115.1 46142 45021 -2 - 1122 Rod shape-determining protein RodA Bacterial Cytoskeleton;
Peptidoglycan Biosynthesis
fig|6666666.229900.peg.2136 CDS AJME02000115.1 48090 46129 -3 - 1962 Penicillin-binding protein 2 (PBP-2) 16S rRNA modification within P site of ribosome;
CBSS-83331.1.peg.3039;
Peptidoglycan Biosynthesis
fig|6666666.229900.peg.2137 CDS AJME02000115.1 48570 48103 -3 - 468 LSU m3Psi1915 methyltransferase RlmH RNA methylation;
Ribosome biogenesis bacterial;
tRNA modification Bacteria
fig|6666666.229900.peg.2138 CDS AJME02000115.1 48938 48630 -2 - 309 Iojap protein - none -
fig|6666666.229900.peg.2139 CDS AJME02000115.1 50261 49005 -2 - 1257 ATP-dependent RNA helicase RhlB - none -
fig|6666666.229900.peg.2140 CDS AJME02000115.1 50586 51824 3 + 1239 Transcription termination factor Rho Transcription factors bacterial
fig|6666666.229900.peg.2141 CDS AJME02000115.1 53184 51949 -3 - 1236 Major facilitator superfamily (MFS) transport protein - none -
fig|6666666.229900.peg.2142 CDS AJME02000115.1 53264 53404 2 + 141 hypothetical protein - none -
fig|6666666.229900.peg.2143 CDS AJME02000115.1 53643 53413 -3 - 231 Acyl carrier protein Fatty Acid Biosynthesis FASII;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229900.peg.2144 CDS AJME02000115.1 54644 53916 -2 - 729 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) Fatty Acid Biosynthesis FASII
fig|6666666.229900.peg.2145 CDS AJME02000115.1 55607 54669 -2 - 939 Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39) Fatty Acid Biosynthesis FASII
fig|6666666.229900.peg.2146 CDS AJME02000115.1 56664 55714 -3 - 951 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) Fatty Acid Biosynthesis FASII
fig|6666666.229900.peg.2147 CDS AJME02000115.1 57719 56697 -2 - 1023 Phosphate:acyl-ACP acyltransferase PlsX Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229900.peg.2148 CDS AJME02000115.1 57916 57746 -1 - 171 LSU ribosomal protein L32p - none -
fig|6666666.229900.peg.2149 CDS AJME02000115.1 58457 57933 -2 - 525 COG1399 protein, clustered with ribosomal protein L32p - none -
fig|6666666.229900.peg.2150 CDS AJME02000115.1 59170 58529 -1 - 642 Dethiobiotin synthetase (EC 6.3.3.3) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229900.peg.2151 CDS AJME02000115.1 59631 59170 -3 - 462 Biotin synthesis protein BioC Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229900.peg.2152 CDS AJME02000115.1 59908 59609 -1 - 300 Biotin synthesis protein BioC Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229900.peg.2153 CDS AJME02000115.1 60576 59926 -3 - 651 Biotin synthesis protein BioG Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229900.peg.2154 CDS AJME02000115.1 61732 60557 -1 - 1176 8-amino-7-oxononanoate synthase (EC 2.3.1.47) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229900.peg.2155 CDS AJME02000115.1 63014 61725 -2 - 1290 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229900.peg.2156 CDS AJME02000115.1 63235 64104 1 + 870 Phosphatidylserine decarboxylase (EC 4.1.1.65) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229900.peg.2157 CDS AJME02000115.1 64131 64763 3 + 633 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase
fig|6666666.229900.peg.2158 CDS AJME02000115.1 65069 64827 -2 - 243 Glutamate 5-kinase (EC 2.7.2.11) Proline Synthesis
fig|6666666.229900.peg.2159 CDS AJME02000115.1 65452 65063 -1 - 390 Glutamate 5-kinase (EC 2.7.2.11) Proline Synthesis
fig|6666666.229900.peg.2160 CDS AJME02000115.1 65724 65575 -3 - 150 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA Proline Synthesis;
Proline Synthesis
fig|6666666.229900.peg.2161 CDS AJME02000115.1 65782 66423 1 + 642 FIG023911: putative membrane protein CBSS-316275.9.peg.382
fig|6666666.229900.peg.2162 CDS AJME02000115.1 66432 66566 3 + 135 FIG023911: putative membrane protein CBSS-316275.9.peg.382
fig|6666666.229900.peg.2163 CDS AJME02000115.1 66568 66924 1 + 357 FIG001826: putative inner membrane protein CBSS-316275.9.peg.382
fig|6666666.229900.peg.2164 CDS AJME02000115.1 66884 67030 2 + 147 FIG001826: putative inner membrane protein CBSS-316275.9.peg.382
fig|6666666.229900.peg.2165 CDS AJME02000115.1 67070 67555 2 + 486 Dihydrofolate reductase (EC 1.5.1.3) 5-FCL-like protein;
Folate Biosynthesis
fig|6666666.229900.peg.2166 CDS AJME02000115.1 68035 67904 -1 - 132 hypothetical protein - none -
fig|6666666.229900.peg.2167 CDS AJME02000116.1 2926 434 -1 - 2493 Translation initiation factor 2 CBSS-138119.3.peg.2719;
NusA-TFII Cluster;
Translation initiation factors bacterial;
Universal GTPases
fig|6666666.229900.peg.2168 CDS AJME02000116.1 4438 2942 -1 - 1497 Transcription termination protein NusA NusA-TFII Cluster;
Transcription factors bacterial
fig|6666666.229900.peg.2169 CDS AJME02000116.1 4921 4466 -1 - 456 FIG000325: clustered with transcription termination protein NusA NusA-TFII Cluster;
Transcription factors bacterial
fig|6666666.229900.peg.2170 CDS AJME02000116.1 5650 5832 1 + 183 hypothetical protein - none -
fig|6666666.229900.peg.2171 CDS AJME02000117.1 333 115 -3 - 219 Translation initiation factor 1 Translation initiation factors bacterial
fig|6666666.229900.peg.2172 CDS AJME02000117.1 388 510 1 + 123 hypothetical protein - none -
fig|6666666.229900.peg.2173 CDS AJME02000117.1 553 1860 1 + 1308 Peptidase B (EC 3.4.11.23) Aminopeptidases (EC 3.4.11.-)
fig|6666666.229900.peg.2174 CDS AJME02000117.1 1872 2297 3 + 426 Nucleoside diphosphate kinase (EC 2.7.4.6) CBSS-498211.3.peg.1415;
Purine conversions;
pyrimidine conversions
fig|6666666.229900.peg.2175 CDS AJME02000117.1 2433 3578 3 + 1146 Beta-hexosaminidase (EC 3.2.1.52) Chitin and N-acetylglucosamine utilization
fig|6666666.229900.peg.2176 CDS AJME02000117.1 3686 3841 2 + 156 Mobile element protein - none -
fig|6666666.229900.peg.2177 CDS AJME02000117.1 5373 4204 -3 - 1170 Lipoprotein NlpD Stationary phase repair cluster
fig|6666666.229900.peg.2178 CDS AJME02000117.1 5581 5390 -1 - 192 Cobalamin biosynthesis protein CobN and related Mg-chelatases - none -
fig|6666666.229900.peg.2179 CDS AJME02000117.1 6171 5596 -3 - 576 FIG139438: lipoprotein B Stationary phase repair cluster
fig|6666666.229900.peg.2180 CDS AJME02000117.1 6939 6199 -3 - 741 5-nucleotidase SurE (EC 3.1.3.5) @ Exopolyphosphatase (EC 3.6.1.11) Housecleaning nucleoside triphosphate pyrophosphatases;
Phosphate metabolism;
Polyphosphate;
Stationary phase repair cluster
fig|6666666.229900.peg.2181 CDS AJME02000117.1 7982 6972 -2 - 1011 tRNA pseudouridine 13 synthase (EC 4.2.1.-) Stationary phase repair cluster;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229900.peg.2182 CDS AJME02000117.1 8458 7979 -1 - 480 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis;
Stationary phase repair cluster
fig|6666666.229900.peg.2183 CDS AJME02000117.1 9150 8455 -3 - 696 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC 2.7.7.60) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis;
Stationary phase repair cluster;
Teichoic and lipoteichoic acids biosynthesis
fig|6666666.229900.peg.2184 CDS AJME02000117.1 9428 9150 -2 - 279 Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage Bacterial Cell Division;
Bacterial Cytoskeleton;
Cell division-ribosomal stress proteins cluster;
Stationary phase repair cluster
fig|6666666.229900.peg.2185 CDS AJME02000117.1 9580 10254 1 + 675 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) Conserved gene cluster associated with Met-tRNA formyltransferase;
Pentose phosphate pathway;
Riboflavin synthesis cluster
fig|6666666.229900.peg.2186 CDS AJME02000117.1 10257 10931 3 + 675 Phosphoglycolate phosphatase (EC 3.1.3.18) 2-phosphoglycolate salvage;
Glycolate, glyoxylate interconversions
fig|6666666.229900.peg.2187 CDS AJME02000117.1 11426 12430 2 + 1005 Tryptophanyl-tRNA synthetase (EC 6.1.1.2) tRNA aminoacylation, Trp
fig|6666666.229900.peg.2188 CDS AJME02000117.1 13161 12517 -3 - 645 3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster;
riboflavin to FAD
fig|6666666.229900.peg.2189 CDS AJME02000117.1 15189 13687 -3 - 1503 Sodium-dependent transporter - none -
fig|6666666.229900.peg.2190 CDS AJME02000117.1 15555 15704 3 + 150 hypothetical protein - none -
fig|6666666.229900.peg.2191 CDS AJME02000117.1 15733 15882 1 + 150 tRNA pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229900.peg.2192 CDS AJME02000117.1 15884 16600 2 + 717 Mg(2+) transport ATPase protein C Magnesium transport
fig|6666666.229900.peg.2193 CDS AJME02000118.1 153 338 3 + 186 hypothetical protein - none -
fig|6666666.229900.peg.2194 CDS AJME02000118.1 3520 2012 -1 - 1509 Lysyl-tRNA synthetase (class II) (EC 6.1.1.6) tRNA aminoacylation, Lys
fig|6666666.229900.peg.2195 CDS AJME02000118.1 4479 3577 -3 - 903 Peptide chain release factor 2; programmed frameshift-containing Programmed frameshift;
Programmed frameshift;
Translation termination factors bacterial
fig|6666666.229900.peg.2196 CDS AJME02000118.1 4759 4598 -1 - 162 hypothetical protein - none -
fig|6666666.229900.peg.2197 CDS AJME02000118.1 4843 5526 1 + 684 Thiol:disulfide interchange protein DsbC Periplasmic disulfide interchange
fig|6666666.229900.peg.2198 CDS AJME02000118.1 5539 7260 1 + 1722 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) DNA Repair Base Excision;
DNA repair, bacterial RecFOR pathway
fig|6666666.229900.peg.2199 CDS AJME02000118.1 7293 7940 3 + 648 Thiol-disulfide isomerase and thioredoxins - none -
fig|6666666.229900.peg.2200 CDS AJME02000118.1 7957 8649 1 + 693 5@1-methylthioadenosine nucleosidase (EC 3.2.2.16) / S-adenosylhomocysteine nucleosidase (EC 3.2.2.9) Adenosyl nucleosidases;
Adenosyl nucleosidases;
Methionine Biosynthesis;
Methionine Degradation;
Polyamine Metabolism
fig|6666666.229900.peg.2201 CDS AJME02000118.1 8828 9523 2 + 696 Additional periplasmic component NikK of nickel ECF transporter Transport of Nickel and Cobalt
fig|6666666.229900.peg.2202 CDS AJME02000118.1 9530 10033 2 + 504 Additional component NikL of nickel ECF transporter Transport of Nickel and Cobalt
fig|6666666.229900.peg.2203 CDS AJME02000118.1 10033 10686 1 + 654 Substrate-specific component NikM of nickel ECF transporter Transport of Nickel and Cobalt
fig|6666666.229900.peg.2204 CDS AJME02000118.1 10683 11348 3 + 666 ATPase component NikO of energizing module of nickel ECF transporter Transport of Nickel and Cobalt
fig|6666666.229900.peg.2205 CDS AJME02000118.1 11345 11968 2 + 624 ATPase component NikO of energizing module of nickel ECF transporter Transport of Nickel and Cobalt
fig|6666666.229900.peg.2206 CDS AJME02000118.1 12047 12856 2 + 810 [NiFe] hydrogenase nickel incorporation-associated protein HypB G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229900.peg.2207 CDS AJME02000118.1 12883 13995 1 + 1113 [NiFe] hydrogenase metallocenter assembly protein HypD G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229900.peg.2208 CDS AJME02000118.1 13995 15008 3 + 1014 [NiFe] hydrogenase metallocenter assembly protein HypE G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229900.peg.2209 CDS AJME02000118.1 19540 18725 -1 - 816 Shikimate 5-dehydrogenase I gamma (EC 1.1.1.25) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229900.peg.2210 CDS AJME02000118.1 20574 19690 -3 - 885 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) 5-FCL-like protein;
Methionine Biosynthesis;
One-carbon metabolism by tetrahydropterines;
Serine-glyoxylate cycle
fig|6666666.229900.peg.2211 CDS AJME02000118.1 21816 20749 -3 - 1068 FIG000906: Predicted Permease CBSS-208964.1.peg.3826
fig|6666666.229900.peg.2212 CDS AJME02000118.1 22939 21821 -1 - 1119 FIG000988: Predicted permease CBSS-208964.1.peg.3826
fig|6666666.229900.peg.2213 CDS AJME02000118.1 23076 24566 3 + 1491 Cytosol aminopeptidase PepA (EC 3.4.11.1) Aminopeptidases (EC 3.4.11.-);
CBSS-208964.1.peg.3826;
Dehydrogenase complexes
fig|6666666.229900.peg.2214 CDS AJME02000118.1 25772 24711 -2 - 1062 Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229900.peg.2215 CDS AJME02000118.1 26307 25759 -3 - 549 Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229900.peg.2216 CDS AJME02000118.1 27327 26563 -3 - 765 Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229900.peg.2217 CDS AJME02000118.1 27555 28334 3 + 780 DNA-binding domain of ModE / Molybdate-binding domain of ModE Molybdenum cofactor biosynthesis;
Molybdenum cofactor biosynthesis
fig|6666666.229900.peg.2218 CDS AJME02000118.1 28501 29898 1 + 1398 Arsenic efflux pump protein Arsenic resistance
fig|6666666.229900.peg.2219 CDS AJME02000118.1 30561 29965 -3 - 597 Nucleotidase YfbR, HD superfamily Housecleaning nucleoside triphosphate pyrophosphatases
fig|6666666.229900.peg.2220 CDS AJME02000118.1 31598 30570 -2 - 1029 Outer membrane stress sensor protease DegS Periplasmic Stress Response;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229900.peg.2221 CDS AJME02000118.1 32731 31607 -1 - 1125 Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster;
Riboflavin synthesis cluster
fig|6666666.229900.peg.2222 CDS AJME02000118.1 33183 32731 -3 - 453 Ribonucleotide reductase transcriptional regulator NrdR Ribonucleotide reduction
fig|6666666.229900.peg.2223 CDS AJME02000118.1 34361 33300 -2 - 1062 LSU rRNA 2@1-O-methyl-C2498 methyltransferase RlmM RNA methylation
fig|6666666.229900.peg.2224 CDS AJME02000118.1 35286 34381 -3 - 906 Glycine cleavage system transcriptional activator GcvA LysR-family proteins in Escherichia coli;
Orphan regulatory proteins
fig|6666666.229900.peg.2225 CDS AJME02000118.1 35748 36767 3 + 1020 Branched-chain amino acid aminotransferase (EC 2.6.1.42) Alanine biosynthesis;
Pyruvate Alanine Serine Interconversions
fig|6666666.229900.rna.1 RNA AJME02000001.1 825 752 -3 - 74 tRNA-Met-CAT - none -
fig|6666666.229900.rna.2 RNA AJME02000001.1 47738 47824 2 + 87 tRNA-Ser-GGA tRNAs
fig|6666666.229900.rna.3 RNA AJME02000014.1 224 152 -2 - 73 tRNA-Thr-GGT - none -
fig|6666666.229900.rna.4 RNA AJME02000014.1 302 231 -2 - 72 tRNA-Gly-TCC - none -
fig|6666666.229900.rna.5 RNA AJME02000014.1 427 346 -1 - 82 tRNA-Tyr-GTA - none -
fig|6666666.229900.rna.6 RNA AJME02000014.1 533 461 -2 - 73 tRNA-Thr-TGT - none -
fig|6666666.229900.rna.7 RNA AJME02000016.1 1600 61 -1 - 1540 Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA - none -
fig|6666666.229900.rna.8 RNA AJME02000018.1 51357 51430 3 + 74 tRNA-Met-CAT - none -
fig|6666666.229900.rna.9 RNA AJME02000019.1 44335 44408 1 + 74 tRNA-Arg-CCG tRNAs
fig|6666666.229900.rna.10 RNA AJME02000019.1 44443 44515 1 + 73 tRNA-His-GTG - none -
fig|6666666.229900.rna.11 RNA AJME02000019.1 44521 44594 1 + 74 tRNA-Pro-TGG - none -
fig|6666666.229900.rna.12 RNA AJME02000020.1 189 3231 3 + 3043 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA - none -
fig|6666666.229900.rna.13 RNA AJME02000020.1 3495 3610 3 + 116 5S RNA - none -
fig|6666666.229900.rna.14 RNA AJME02000025.1 8486 8413 -2 - 74 tRNA-Arg-ACG tRNAs
fig|6666666.229900.rna.15 RNA AJME02000025.1 8617 8544 -1 - 74 tRNA-Arg-ACG tRNAs
fig|6666666.229900.rna.16 RNA AJME02000025.1 8728 8638 -1 - 91 tRNA-Ser-GCT - none -
fig|6666666.229900.rna.17 RNA AJME02000029.1 11893 11810 -1 - 84 tRNA-Leu-CAG tRNAs
fig|6666666.229900.rna.18 RNA AJME02000032.1 5614 5696 1 + 83 tRNA-Leu-CAA tRNAs
fig|6666666.229900.rna.19 RNA AJME02000039.1 8146 8073 -1 - 74 tRNA-Arg-TCT - none -
fig|6666666.229900.rna.20 RNA AJME02000039.1 8256 8183 -3 - 74 tRNA-Pro-TGG - none -
fig|6666666.229900.rna.21 RNA AJME02000039.1 30778 30868 1 + 91 tRNA-SeC(p)-TCA - none -
fig|6666666.229900.rna.22 RNA AJME02000051.1 72877 72959 1 + 83 tRNA-Leu-GAG tRNAs
fig|6666666.229900.rna.23 RNA AJME02000052.1 6105 6178 3 + 74 tRNA-Met-CAT - none -
fig|6666666.229900.rna.24 RNA AJME02000052.1 6187 6268 1 + 82 tRNA-Leu-TAG - none -
fig|6666666.229900.rna.25 RNA AJME02000052.1 6301 6372 1 + 72 tRNA-Gln-TTG - none -
fig|6666666.229900.rna.26 RNA AJME02000052.1 6413 6484 2 + 72 tRNA-Gln-TTG - none -
fig|6666666.229900.rna.27 RNA AJME02000054.1 9573 9645 3 + 73 tRNA-Gly-GCC tRNAs
fig|6666666.229900.rna.28 RNA AJME02000054.1 9650 9733 2 + 84 tRNA-Leu-TAA - none -
fig|6666666.229900.rna.29 RNA AJME02000054.1 9788 9860 2 + 73 tRNA-Lys-TTT - none -
fig|6666666.229900.rna.30 RNA AJME02000073.1 47241 47311 3 + 71 tRNA-Pseudo-AAC - none -
fig|6666666.229900.rna.31 RNA AJME02000073.1 110268 110341 3 + 74 tRNA-Val-GAC tRNAs
fig|6666666.229900.rna.32 RNA AJME02000078.1 37151 37079 -2 - 73 tRNA-Gly-GCC tRNAs
fig|6666666.229900.rna.33 RNA AJME02000079.1 221 149 -2 - 73 tRNA-Ala-TGC - none -
fig|6666666.229900.rna.34 RNA AJME02000079.1 347 274 -2 - 74 tRNA-Ile-GAT - none -
fig|6666666.229900.rna.35 RNA AJME02000088.1 9798 9870 3 + 73 tRNA-Asn-GTT - none -
fig|6666666.229900.rna.36 RNA AJME02000088.1 70775 70848 2 + 74 tRNA-Asp-GTC - none -
fig|6666666.229900.rna.37 RNA AJME02000090.1 74049 73977 -3 - 73 tRNA-Asn-GTT - none -
fig|6666666.229900.rna.38 RNA AJME02000090.1 74129 74057 -2 - 73 tRNA-Phe-GAA tRNAs
fig|6666666.229900.rna.39 RNA AJME02000093.1 33590 33504 -2 - 87 tRNA-Ser-TGA - none -
fig|6666666.229900.rna.40 RNA AJME02000093.1 40988 41060 2 + 73 tRNA-Gly-GCC tRNAs
fig|6666666.229900.rna.41 RNA AJME02000093.1 41072 41142 2 + 71 tRNA-Cys-GCA tRNAs
fig|6666666.229900.rna.42 RNA AJME02000107.1 6278 6206 -2 - 73 tRNA-Val-TAC - none -
fig|6666666.229900.rna.43 RNA AJME02000107.1 8091 8163 3 + 73 tRNA-Ala-GGC tRNAs
fig|6666666.229900.rna.44 RNA AJME02000110.1 31139 31066 -2 - 74 tRNA-Lys-CTT - none -
fig|6666666.229900.rna.45 RNA AJME02000110.1 31240 31168 -1 - 73 tRNA-Lys-TTT - none -
fig|6666666.229900.rna.46 RNA AJME02000116.1 5153 5080 -2 - 74 tRNA-Met-CAT - none -
fig|6666666.229900.rna.47 RNA AJME02000116.1 7179 7107 -3 - 73 tRNA-Trp-CCA tRNAs
fig|6666666.229900.rna.48 RNA AJME02000116.1 7290 7217 -3 - 74 tRNA-Asp-GTC - none -
fig|6666666.229900.rna.49 RNA AJME02000116.1 7416 7297 -3 - 120 5S RNA - none -