fig|6666666.229901.peg.1 CDS AJMG02000001.1 937 110 -1 - 828 Glutamate racemase (EC 5.1.1.3) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Peptidoglycan Biosynthesis
fig|6666666.229901.peg.2 CDS AJMG02000001.1 1465 968 -1 - 498 Chorismate--pyruvate lyase (EC 4.1.3.40) Ubiquinone Biosynthesis
fig|6666666.229901.peg.3 CDS AJMG02000001.1 3539 1458 -2 - 2082 ATP-dependent DNA helicase RecG (EC 3.6.1.-) - none -
fig|6666666.229901.peg.4 CDS AJMG02000001.1 5663 3540 -2 - 2124 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II / Guanosine-3@1,5@1-bis(diphosphate) 3@1-pyrophosphohydrolase (EC 3.1.7.2) CBSS-176299.4.peg.1292;
CBSS-176299.4.peg.1292;
Stringent Response, (p)ppGpp metabolism;
Stringent Response, (p)ppGpp metabolism
fig|6666666.229901.peg.5 CDS AJMG02000001.1 5975 5709 -2 - 267 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) CBSS-176299.4.peg.1292;
RNA polymerase bacterial
fig|6666666.229901.peg.6 CDS AJMG02000001.1 6671 6033 -2 - 639 Guanylate kinase (EC 2.7.4.8) CBSS-323097.3.peg.2594;
Purine conversions
fig|6666666.229901.peg.7 CDS AJMG02000001.1 6684 6833 3 + 150 hypothetical protein - none -
fig|6666666.229901.peg.8 CDS AJMG02000001.1 6913 7917 1 + 1005 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) Glycolysis and Gluconeogenesis;
Pyridoxin (Vitamin B6) Biosynthesis
fig|6666666.229901.peg.9 CDS AJMG02000001.1 8427 8011 -3 - 417 conserved hypothetical protein; possible membrane protein - none -
fig|6666666.229901.peg.10 CDS AJMG02000001.1 8500 8928 1 + 429 Putative oligoketide cyclase/lipid transport protein, similarity with yeast ubiquinone-binding protein YOL008W - none -
fig|6666666.229901.peg.11 CDS AJMG02000001.1 8921 9214 2 + 294 UPF0125 protein yfjF - none -
fig|6666666.229901.peg.12 CDS AJMG02000001.1 9247 10440 1 + 1194 FIG074102: hypothetical protein - none -
fig|6666666.229901.peg.13 CDS AJMG02000001.1 10447 11781 1 + 1335 Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) DNA repair, bacterial;
Purine salvage cluster
fig|6666666.229901.peg.14 CDS AJMG02000001.1 12641 11787 -2 - 855 FIG000506: Predicted P-loop-containing kinase - none -
fig|6666666.229901.peg.15 CDS AJMG02000001.1 13190 12669 -2 - 522 PTS IIA-like nitrogen-regulatory protein PtsN - none -
fig|6666666.229901.peg.16 CDS AJMG02000001.1 13919 13194 -2 - 726 Lipopolysaccharide ABC transporter, ATP-binding protein LptB Lipopolysaccharide assembly
fig|6666666.229901.peg.17 CDS AJMG02000001.1 14443 13925 -1 - 519 LptA, protein essential for LPS transport across the periplasm Lipopolysaccharide assembly
fig|6666666.229901.peg.18 CDS AJMG02000001.1 14999 14424 -2 - 576 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters Lipopolysaccharide assembly
fig|6666666.229901.peg.19 CDS AJMG02000001.1 15283 16080 1 + 798 Uncharacterized ABC transporter, ATP-binding protein YrbF CBSS-12149.1.peg.3301;
Lipopolysaccharide assembly
fig|6666666.229901.peg.20 CDS AJMG02000001.1 16074 16859 3 + 786 Uncharacterized ABC transporter, permease component YrbE CBSS-12149.1.peg.3301;
Lipopolysaccharide assembly
fig|6666666.229901.peg.21 CDS AJMG02000001.1 16882 17391 1 + 510 Uncharacterized ABC transporter, periplasmic component YrbD CBSS-12149.1.peg.3301;
Lipopolysaccharide assembly
fig|6666666.229901.peg.22 CDS AJMG02000001.1 17420 18061 2 + 642 Uncharacterized ABC transporter, auxiliary component YrbC CBSS-12149.1.peg.3301;
Lipopolysaccharide assembly
fig|6666666.229901.peg.23 CDS AJMG02000001.1 18065 18400 2 + 336 Uncharacterized protein YrbB CBSS-12149.1.peg.3301
fig|6666666.229901.peg.24 CDS AJMG02000001.1 18400 18657 1 + 258 YrbA protein Broadly distributed proteins not in subsystems;
CBSS-12149.1.peg.3301
fig|6666666.229901.peg.25 CDS AJMG02000001.1 18674 19951 2 + 1278 UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7) CBSS-12149.1.peg.3301;
Peptidoglycan Biosynthesis;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229901.peg.26 CDS AJMG02000001.1 20303 20013 -2 - 291 FIG00696346: hypothetical protein - none -
fig|6666666.229901.peg.27 CDS AJMG02000001.1 20506 21936 1 + 1431 Long-chain fatty acid transport protein - none -
fig|6666666.229901.peg.28 CDS AJMG02000001.1 22013 22552 2 + 540 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) DNA repair, bacterial
fig|6666666.229901.peg.29 CDS AJMG02000001.1 22549 23217 1 + 669 DNA mismatch repair endonuclease MutH DNA repair, bacterial
fig|6666666.229901.peg.30 CDS AJMG02000001.1 23282 24007 2 + 726 Integral membrane protein TerC - none -
fig|6666666.229901.peg.31 CDS AJMG02000001.1 25525 24116 -1 - 1410 Glutamine synthetase type I (EC 6.3.1.2) Ammonia assimilation;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Glutamine synthetases;
Peptidoglycan Biosynthesis
fig|6666666.229901.peg.32 CDS AJMG02000001.1 25912 27765 1 + 1854 GTP-binding protein TypA/BipA Universal GTPases
fig|6666666.229901.peg.33 CDS AJMG02000001.1 27875 27762 -2 - 114 hypothetical protein - none -
fig|6666666.229901.peg.34 CDS AJMG02000001.1 27991 30501 1 + 2511 TolA protein Ton and Tol transport systems
fig|6666666.229901.peg.35 CDS AJMG02000001.1 31029 30565 -3 - 465 Thiol peroxidase, Bcp-type (EC 1.11.1.15) CBSS-316057.3.peg.3521;
Thioredoxin-disulfide reductase
fig|6666666.229901.peg.36 CDS AJMG02000001.1 31187 32080 2 + 894 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229901.peg.37 CDS AJMG02000001.1 32193 33197 3 + 1005 Outer membrane protein NlpB, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and YfgL); Lipoprotein-34 precursor Lipopolysaccharide assembly
fig|6666666.229901.peg.38 CDS AJMG02000001.1 33332 34843 2 + 1512 L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1) / Osmotic adaptation Choline and Betaine Uptake and Betaine Biosynthesis
fig|6666666.229901.peg.39 CDS AJMG02000001.1 35158 35994 1 + 837 L-proline glycine betaine ABC transport system permease protein ProV (TC 3.A.1.12.1) Choline and Betaine Uptake and Betaine Biosynthesis
fig|6666666.229901.peg.40 CDS AJMG02000001.1 36742 36047 -1 - 696 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC A Hypothetical Protein Related to Proline Metabolism;
CBSS-630.2.peg.3360
fig|6666666.229901.peg.41 CDS AJMG02000001.1 38123 36735 -2 - 1389 Nicotinamide phosphoribosyltransferase (EC 2.4.2.12) NAD and NADP cofactor biosynthesis global
fig|6666666.229901.peg.42 CDS AJMG02000001.1 38262 38393 3 + 132 hypothetical protein - none -
fig|6666666.229901.peg.43 CDS AJMG02000001.1 38482 40929 1 + 2448 Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) CBSS-216591.1.peg.168;
Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch;
Methionine Biosynthesis;
Threonine and Homoserine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229901.peg.44 CDS AJMG02000001.1 40942 41886 1 + 945 Homoserine kinase (EC 2.7.1.39) CBSS-269482.1.peg.1294;
Methionine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229901.peg.45 CDS AJMG02000001.1 41914 42354 1 + 441 hypothetical protein - none -
fig|6666666.229901.peg.46 CDS AJMG02000001.1 42806 43630 2 + 825 Threonine synthase (EC 4.2.3.1) Threonine and Homoserine Biosynthesis
fig|6666666.229901.peg.47 CDS AJMG02000001.1 43689 44408 3 + 720 4@1-phosphopantetheinyl transferase (EC 2.7.8.-) Fatty Acid Biosynthesis FASII
fig|6666666.229901.peg.48 CDS AJMG02000001.1 44504 45757 2 + 1254 HflK protein Hfl operon;
Scaffold proteins for [4Fe-4S] cluster assembly (MRP family)
fig|6666666.229901.peg.49 CDS AJMG02000001.1 45757 46644 1 + 888 HflC protein Hfl operon;
Scaffold proteins for [4Fe-4S] cluster assembly (MRP family)
fig|6666666.229901.peg.50 CDS AJMG02000001.1 46932 46777 -3 - 156 hypothetical protein - none -
fig|6666666.229901.peg.51 CDS AJMG02000001.1 46934 47263 2 + 330 DNA uptake protein and related DNA-binding proteins - none -
fig|6666666.229901.peg.52 CDS AJMG02000001.1 47289 47969 3 + 681 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) Heat shock dnaK gene cluster extended;
Housecleaning nucleoside triphosphate pyrophosphatases
fig|6666666.229901.peg.53 CDS AJMG02000001.1 48008 48331 2 + 324 PlcB, ORFX, ORFP, ORFB, ORFA, ldh gene - none -
fig|6666666.229901.peg.54 CDS AJMG02000001.1 48331 49500 1 + 1170 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB CBSS-630.2.peg.3360;
Heat shock dnaK gene cluster extended;
Heme and Siroheme Biosynthesis;
Queuosine-Archaeosine Biosynthesis
fig|6666666.229901.peg.55 CDS AJMG02000001.1 49599 50255 3 + 657 Ribose 5-phosphate isomerase A (EC 5.3.1.6) D-ribose utilization;
Pentose phosphate pathway
fig|6666666.229901.peg.56 CDS AJMG02000001.1 50275 51507 1 + 1233 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) Glycine and Serine Utilization;
Pyridoxin (Vitamin B6) Biosynthesis;
Serine Biosynthesis
fig|6666666.229901.peg.57 CDS AJMG02000001.1 51516 51635 3 + 120 hypothetical protein - none -
fig|6666666.229901.peg.58 CDS AJMG02000001.1 51817 52863 1 + 1047 iron chelatin ABC transporter periplasmic-binding protein - none -
fig|6666666.229901.peg.59 CDS AJMG02000001.1 53053 54036 1 + 984 TRAP-type C4-dicarboxylate transport system, large permease component TRAP Transporter collection
fig|6666666.229901.peg.60 CDS AJMG02000001.1 54060 56435 3 + 2376 Alpha-glucosidase (EC 3.2.1.20) Maltose and Maltodextrin Utilization
fig|6666666.229901.peg.61 CDS AJMG02000001.1 56450 56965 2 + 516 Hexuronate utilization operon transcriptional repressor ExuR - none -
fig|6666666.229901.peg.62 CDS AJMG02000001.1 57078 57206 3 + 129 Hexuronate utilization operon transcriptional repressor ExuR - none -
fig|6666666.229901.peg.63 CDS AJMG02000001.1 57226 58410 1 + 1185 Mannonate dehydratase (EC 4.2.1.8) - none -
fig|6666666.229901.peg.64 CDS AJMG02000001.1 58448 59005 2 + 558 hypothetical protein - none -
fig|6666666.229901.peg.65 CDS AJMG02000001.1 59055 59378 3 + 324 hypothetical protein - none -
fig|6666666.229901.peg.66 CDS AJMG02000001.1 59435 60325 2 + 891 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229901.peg.67 CDS AJMG02000001.1 62105 60351 -2 - 1755 Putative sulfate permease - none -
fig|6666666.229901.peg.68 CDS AJMG02000001.1 62536 64953 1 + 2418 ATP-dependent protease La (EC 3.4.21.53) Type I Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229901.peg.69 CDS AJMG02000001.1 66865 65015 -1 - 1851 RNA polymerase sigma factor RpoD CBSS-349161.4.peg.2417;
Macromolecular synthesis operon;
Transcription initiation, bacterial sigma factors
fig|6666666.229901.peg.70 CDS AJMG02000001.1 68698 66941 -1 - 1758 DNA primase (EC 2.7.7.-) CBSS-349161.4.peg.2417;
Macromolecular synthesis operon
fig|6666666.229901.peg.71 CDS AJMG02000001.1 69035 68820 -2 - 216 SSU ribosomal protein S21p Macromolecular synthesis operon;
Ribosome SSU bacterial
fig|6666666.229901.peg.72 CDS AJMG02000001.1 69070 69237 1 + 168 hypothetical protein - none -
fig|6666666.229901.peg.73 CDS AJMG02000001.1 69260 70288 2 + 1029 TsaD/Kae1/Qri7 protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Macromolecular synthesis operon;
YgjD and YeaZ;
YrdC-YciO-Sua5 protein family
fig|6666666.229901.peg.74 CDS AJMG02000001.1 70353 70586 3 + 234 unknown - none -
fig|6666666.229901.peg.75 CDS AJMG02000001.1 70589 71167 2 + 579 Thymidine kinase (EC 2.7.1.21) pyrimidine conversions
fig|6666666.229901.peg.76 CDS AJMG02000001.1 73247 71235 -2 - 2013 DNA ligase (EC 6.5.1.2) DNA Repair Base Excision
fig|6666666.229901.peg.77 CDS AJMG02000001.1 74386 73349 -1 - 1038 Cell division protein ZipA Bacterial Cytoskeleton
fig|6666666.229901.peg.78 CDS AJMG02000001.1 74526 75350 3 + 825 Sulfate transporter, CysZ-type Cysteine Biosynthesis
fig|6666666.229901.peg.79 CDS AJMG02000001.1 75451 76398 1 + 948 Cysteine synthase (EC 2.5.1.47) Cysteine Biosynthesis;
Methionine Biosynthesis
fig|6666666.229901.peg.80 CDS AJMG02000001.1 76476 76363 -3 - 114 hypothetical protein - none -
fig|6666666.229901.peg.81 CDS AJMG02000001.1 76764 76618 -3 - 147 hypothetical protein - none -
fig|6666666.229901.peg.82 CDS AJMG02000001.1 77421 76840 -3 - 582 Hypothetical protein VC0266 (sugar utilization related?) VC0266
fig|6666666.229901.peg.83 CDS AJMG02000001.1 78821 77730 -2 - 1092 GTP-binding and nucleic acid-binding protein YchF Universal GTPases
fig|6666666.229901.peg.84 CDS AJMG02000001.1 79693 79010 -1 - 684 Peptidyl-tRNA hydrolase (EC 3.1.1.29) Cell division-ribosomal stress proteins cluster;
Sporulation-associated proteins with broader functions;
Transcription repair cluster;
Translation termination factors bacterial
fig|6666666.229901.peg.85 CDS AJMG02000001.1 80059 80601 1 + 543 Mobile element protein - none -
fig|6666666.229901.peg.86 CDS AJMG02000003.1 465 109 -3 - 357 Diacylglycerol kinase (EC 2.7.1.107) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Riboflavin synthesis cluster
fig|6666666.229901.peg.87 CDS AJMG02000003.1 2721 490 -3 - 2232 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I CBSS-176299.4.peg.1292;
Stringent Response, (p)ppGpp metabolism
fig|6666666.229901.peg.88 CDS AJMG02000003.1 4047 2731 -3 - 1317 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) RNA methylation
fig|6666666.229901.peg.89 CDS AJMG02000003.1 4735 4049 -1 - 687 DNA recombination and repair protein RecO CBSS-176299.4.peg.1292;
DNA repair, bacterial RecFOR pathway;
Glycyl-tRNA synthetase containing cluster
fig|6666666.229901.peg.90 CDS AJMG02000003.1 5880 5032 -3 - 849 Translation elongation factor Ts CBSS-312309.3.peg.1965;
Ribosome recycling related cluster;
Translation elongation factors bacterial
fig|6666666.229901.peg.91 CDS AJMG02000003.1 6757 6035 -1 - 723 SSU ribosomal protein S2p (SAe) CBSS-312309.3.peg.1965;
Ribosome SSU bacterial;
Ribosome recycling related cluster
fig|6666666.229901.peg.92 CDS AJMG02000003.1 7221 6832 -3 - 390 Patatin-like phospholipase - none -
fig|6666666.229901.peg.93 CDS AJMG02000003.1 8227 7340 -1 - 888 Folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress - none -
fig|6666666.229901.peg.94 CDS AJMG02000003.1 9118 8255 -1 - 864 Protein YicC CBSS-323097.3.peg.2594
fig|6666666.229901.peg.95 CDS AJMG02000003.1 9236 9952 2 + 717 Ribonuclease PH (EC 2.7.7.56) Heat shock dnaK gene cluster extended;
tRNA processing
fig|6666666.229901.peg.96 CDS AJMG02000003.1 9962 10606 2 + 645 Orotate phosphoribosyltransferase (EC 2.4.2.10) De Novo Pyrimidine Synthesis
fig|6666666.229901.peg.97 CDS AJMG02000003.1 10688 11563 2 + 876 DnaJ-like protein DjlA - none -
fig|6666666.229901.peg.98 CDS AJMG02000003.1 11567 12571 2 + 1005 tRNA-dihydrouridine synthase C (EC 1.-.-.-) Murein hydrolase regulation and cell death;
tRNA modification Bacteria
fig|6666666.229901.peg.99 CDS AJMG02000003.1 13615 12557 -1 - 1059 Ferric iron ABC transporter, ATP-binding protein Iron acquisition in Streptococcus
fig|6666666.229901.peg.100 CDS AJMG02000003.1 15010 13631 -1 - 1380 Ferric iron ABC transporter, permease protein Iron acquisition in Streptococcus
fig|6666666.229901.peg.101 CDS AJMG02000003.1 16230 15232 -3 - 999 Ferric iron ABC transporter, iron-binding protein Iron acquisition in Streptococcus
fig|6666666.229901.peg.102 CDS AJMG02000003.1 16790 16449 -2 - 342 FIG002060: uncharacterized protein YggL CBSS-83333.1.peg.2911
fig|6666666.229901.peg.103 CDS AJMG02000003.1 17588 16821 -2 - 768 tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33) CBSS-83333.1.peg.2911;
RNA methylation;
tRNA modification Bacteria
fig|6666666.229901.peg.104 CDS AJMG02000003.1 17754 18944 3 + 1191 A/G-specific adenine glycosylase (EC 3.2.2.-) DNA repair, bacterial
fig|6666666.229901.peg.105 CDS AJMG02000003.1 18922 19200 1 + 279 FIG001341: Probable Fe(2+)-trafficking protein YggX Heat shock dnaK gene cluster extended
fig|6666666.229901.peg.106 CDS AJMG02000003.1 19203 20282 3 + 1080 Membrane-bound lytic murein transglycosylase C precursor (EC 3.2.1.-) Murein Hydrolases
fig|6666666.229901.peg.107 CDS AJMG02000003.1 20677 20802 1 + 126 hypothetical protein - none -
fig|6666666.229901.peg.108 CDS AJMG02000003.1 21376 20783 -1 - 594 Hypothetical lipoprotein YajG precursor CBSS-339671.5.peg.589
fig|6666666.229901.peg.109 CDS AJMG02000003.1 21480 21791 3 + 312 Cell division protein BolA Bacterial Cell Division;
CBSS-339671.5.peg.589
fig|6666666.229901.peg.110 CDS AJMG02000003.1 21801 21917 3 + 117 hypothetical protein - none -
fig|6666666.229901.peg.111 CDS AJMG02000003.1 22065 21928 -3 - 138 hypothetical protein - none -
fig|6666666.229901.peg.112 CDS AJMG02000003.1 22147 23487 1 + 1341 Na(+)-translocating NADH-quinone reductase subunit A (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229901.peg.113 CDS AJMG02000003.1 23490 24725 3 + 1236 Na(+)-translocating NADH-quinone reductase subunit B (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229901.peg.114 CDS AJMG02000003.1 24718 25503 1 + 786 Na(+)-translocating NADH-quinone reductase subunit C (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229901.peg.115 CDS AJMG02000003.1 25503 26132 3 + 630 Na(+)-translocating NADH-quinone reductase subunit D (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229901.peg.116 CDS AJMG02000003.1 26136 26732 3 + 597 Na(+)-translocating NADH-quinone reductase subunit E (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229901.peg.117 CDS AJMG02000003.1 26744 27979 2 + 1236 Na(+)-translocating NADH-quinone reductase subunit F (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229901.peg.118 CDS AJMG02000003.1 27984 28133 3 + 150 hypothetical protein - none -
fig|6666666.229901.peg.119 CDS AJMG02000003.1 28130 29218 2 + 1089 Thiamin biosynthesis lipoprotein ApbE - none -
fig|6666666.229901.peg.120 CDS AJMG02000003.1 29297 29554 2 + 258 Probable exported or periplasmic protein in ApbE locus Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229901.peg.121 CDS AJMG02000003.1 29815 30966 1 + 1152 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) CBSS-354.1.peg.876;
RNA methylation;
Riboflavin, FMN and FAD metabolism in plants;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229901.peg.122 CDS AJMG02000003.1 31419 31535 3 + 117 hypothetical protein - none -
fig|6666666.229901.peg.123 CDS AJMG02000003.1 31604 32914 2 + 1311 Enolase (EC 4.2.1.11) Glycolysis and Gluconeogenesis
fig|6666666.229901.peg.124 CDS AJMG02000003.1 33429 33010 -3 - 420 Putative Holliday junction resolvase YggF Cluster containing Alanyl-tRNA synthetase;
Cluster containing Glutathione synthetase
fig|6666666.229901.peg.125 CDS AJMG02000003.1 33986 33429 -2 - 558 UPF0301 protein YqgE Cluster containing Glutathione synthetase
fig|6666666.229901.peg.126 CDS AJMG02000003.1 34638 34003 -3 - 636 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) Cluster containing Glutathione synthetase;
Heat shock dnaK gene cluster extended;
RNA methylation
fig|6666666.229901.peg.127 CDS AJMG02000003.1 34736 34867 2 + 132 hypothetical protein - none -
fig|6666666.229901.peg.128 CDS AJMG02000003.1 35141 34824 -2 - 318 Methionine repressor MetJ Methionine Biosynthesis
fig|6666666.229901.peg.129 CDS AJMG02000003.1 36183 35296 -3 - 888 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) - none -
fig|6666666.229901.peg.130 CDS AJMG02000003.1 37623 36259 -3 - 1365 Phosphomannomutase (EC 5.4.2.8) Mannose Metabolism
fig|6666666.229901.peg.131 CDS AJMG02000003.1 37837 37655 -1 - 183 Carbon storage regulator Carbon Starvation;
Carbon storage regulator
fig|6666666.229901.peg.132 CDS AJMG02000003.1 40584 37960 -3 - 2625 Alanyl-tRNA synthetase (EC 6.1.1.7) Cluster containing Alanyl-tRNA synthetase;
tRNA aminoacylation, Ala
fig|6666666.229901.peg.133 CDS AJMG02000003.1 41209 40784 -1 - 426 Universal stress protein A Universal stress protein family
fig|6666666.229901.peg.134 CDS AJMG02000003.1 41319 42185 3 + 867 Nucleoside triphosphate pyrophosphohydrolase MazG (EC 3.6.1.8) Nucleoside triphosphate pyrophosphohydrolase MazG
fig|6666666.229901.peg.135 CDS AJMG02000003.1 43272 42283 -3 - 990 Cytosine deaminase (EC 3.5.4.1) CBSS-326442.4.peg.1852;
Creatine and Creatinine Degradation;
pyrimidine conversions
fig|6666666.229901.peg.136 CDS AJMG02000003.1 45270 43531 -3 - 1740 FIG001881: hydrolase of alkaline phosphatase superfamily CBSS-211586.1.peg.1979
fig|6666666.229901.peg.137 CDS AJMG02000003.1 45499 45275 -1 - 225 FIG002927: hypothetical protein CBSS-211586.1.peg.1979
fig|6666666.229901.peg.138 CDS AJMG02000003.1 45626 46651 2 + 1026 Nucleoid-associated protein NdpA CBSS-211586.1.peg.1979
fig|6666666.229901.peg.139 CDS AJMG02000003.1 46717 47130 1 + 414 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex Lipopolysaccharide assembly
fig|6666666.229901.peg.140 CDS AJMG02000003.1 47172 47867 3 + 696 Copper-sensing two-component system response regulator CpxR Orphan regulatory proteins
fig|6666666.229901.peg.141 CDS AJMG02000003.1 47912 49300 2 + 1389 Copper sensory histidine kinase CpxA Orphan regulatory proteins
fig|6666666.229901.peg.142 CDS AJMG02000003.1 50564 49356 -2 - 1209 Sodium/glutamate symport protein - none -
fig|6666666.229901.peg.143 CDS AJMG02000003.1 51164 50730 -2 - 435 D-tyrosyl-tRNA(Tyr) deacylase (EC 3.6.1.n1) - none -
fig|6666666.229901.peg.144 CDS AJMG02000003.1 51991 51161 -1 - 831 Ribonuclease BN (EC 3.1.-.-) - none -
fig|6666666.229901.peg.145 CDS AJMG02000003.1 52461 51988 -3 - 474 UPF0225 protein YchJ Broadly distributed proteins not in subsystems
fig|6666666.229901.peg.146 CDS AJMG02000003.1 53132 52464 -2 - 669 Uncharacterized protein conserved in bacteria - none -
fig|6666666.229901.peg.147 CDS AJMG02000003.1 53258 54757 2 + 1500 ATPase component BioM of energizing module of biotin ECF transporter Biotin biosynthesis;
Biotin synthesis cluster;
ECF class transporters
fig|6666666.229901.peg.148 CDS AJMG02000003.1 55096 55911 1 + 816 putative tetracenomycin polyketide synthesis O-methyltransferase - none -
fig|6666666.229901.peg.149 CDS AJMG02000003.1 56882 55989 -2 - 894 Transcriptional regulator, LysR family - none -
fig|6666666.229901.peg.150 CDS AJMG02000003.1 57241 58086 1 + 846 oxidoreductase of aldo/keto reductase family, subgroup 1 - none -
fig|6666666.229901.peg.151 CDS AJMG02000003.1 58150 59130 1 + 981 Aldo-keto reductase - none -
fig|6666666.229901.peg.152 CDS AJMG02000003.1 59356 60411 1 + 1056 Carboxylesterase type B - none -
fig|6666666.229901.peg.153 CDS AJMG02000003.1 60679 61011 1 + 333 Carboxylesterase type B - none -
fig|6666666.229901.peg.154 CDS AJMG02000003.1 61148 62257 2 + 1110 Putative exported protein precursor - none -
fig|6666666.229901.peg.155 CDS AJMG02000003.1 63286 62396 -1 - 891 Transcriptional regulator, LysR family - none -
fig|6666666.229901.peg.156 CDS AJMG02000003.1 63356 63475 2 + 120 hypothetical protein - none -
fig|6666666.229901.peg.157 CDS AJMG02000003.1 63488 63817 2 + 330 FIG01220323: hypothetical protein - none -
fig|6666666.229901.peg.158 CDS AJMG02000003.1 63801 64442 3 + 642 FIG01220323: hypothetical protein - none -
fig|6666666.229901.peg.159 CDS AJMG02000003.1 66426 64594 -3 - 1833 Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) Sialic Acid Metabolism;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229901.peg.160 CDS AJMG02000003.1 67278 66481 -3 - 798 Transcriptional regulator of glmS gene, DeoR family - none -
fig|6666666.229901.peg.161 CDS AJMG02000003.1 67676 67404 -2 - 273 DNA-binding protein HU-alpha DNA structural proteins, bacterial;
DNA uptake cluster
fig|6666666.229901.peg.162 CDS AJMG02000003.1 68433 67843 -3 - 591 FIG01200173: hypothetical protein - none -
fig|6666666.229901.peg.163 CDS AJMG02000003.1 69515 68451 -2 - 1065 Uroporphyrinogen III decarboxylase (EC 4.1.1.37) Heme and Siroheme Biosynthesis
fig|6666666.229901.peg.164 CDS AJMG02000003.1 70403 69528 -2 - 876 NADH pyrophosphatase (EC 3.6.1.22) DNA uptake cluster;
Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229901.peg.165 CDS AJMG02000003.1 71096 70452 -2 - 645 converved hypothetical protein - none -
fig|6666666.229901.peg.166 CDS AJMG02000003.1 71354 72970 2 + 1617 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) CBSS-584.1.peg.3382;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229901.peg.167 CDS AJMG02000003.1 74582 73035 -2 - 1548 Exopolyphosphatase (EC 3.6.1.11) Phosphate metabolism;
Polyphosphate
fig|6666666.229901.peg.168 CDS AJMG02000003.1 78466 74585 -1 - 3882 Uncharacterized protein YtfN Cluster Ytf and putative sugar transporter;
Putative sugar ABC transporter (ytf cluster)
fig|6666666.229901.peg.169 CDS AJMG02000003.1 80353 78494 -1 - 1860 Uncharacterized protein YtfM precursor Cluster Ytf and putative sugar transporter;
Putative sugar ABC transporter (ytf cluster)
fig|6666666.229901.peg.170 CDS AJMG02000003.1 81049 80420 -1 - 630 Nitrate/nitrite response regulator protein - none -
fig|6666666.229901.peg.171 CDS AJMG02000003.1 83560 81059 -1 - 2502 Adenylate cyclase (EC 4.6.1.1) cAMP signaling in bacteria
fig|6666666.229901.peg.172 CDS AJMG02000003.1 83716 84642 1 + 927 Porphobilinogen deaminase (EC 2.5.1.61) Heme and Siroheme Biosynthesis
fig|6666666.229901.peg.173 CDS AJMG02000003.1 84655 85401 1 + 747 Uroporphyrinogen-III synthase (EC 4.2.1.75) Heme and Siroheme Biosynthesis
fig|6666666.229901.peg.174 CDS AJMG02000003.1 85430 86815 2 + 1386 Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) Heme and Siroheme Biosynthesis
fig|6666666.229901.peg.175 CDS AJMG02000003.1 86828 88078 2 + 1251 Uncharacterized protein EC-HemY, likely associated with heme metabolism based on gene clustering with hemC, hemD in Proteobacteria (unrelated to HemY-type PPO in GramPositives) - none -
fig|6666666.229901.peg.176 CDS AJMG02000003.1 88882 88145 -1 - 738 Putative preQ0 transporter Queuosine-Archaeosine Biosynthesis
fig|6666666.229901.peg.177 CDS AJMG02000003.1 89144 89425 2 + 282 hypothetical protein - none -
fig|6666666.229901.peg.178 CDS AJMG02000003.1 89611 90198 1 + 588 DNA-directed RNA polymerase specialized sigma subunit, sigma24-like - none -
fig|6666666.229901.peg.179 CDS AJMG02000003.1 90213 90404 3 + 192 hypothetical protein - none -
fig|6666666.229901.peg.180 CDS AJMG02000003.1 90969 90487 -3 - 483 Transcription elongation factor GreB CBSS-243265.1.peg.198;
Transcription factors bacterial
fig|6666666.229901.peg.181 CDS AJMG02000003.1 91180 91314 1 + 135 Transcription accessory protein (S1 RNA-binding domain) CBSS-243265.1.peg.198;
Cell division-ribosomal stress proteins cluster;
Transcription factors bacterial
fig|6666666.229901.peg.182 CDS AJMG02000003.1 92303 91704 -2 - 600 Phosphoglycerate mutase (EC 5.4.2.1) Glycolysis and Gluconeogenesis;
Phosphoglycerate mutase protein family
fig|6666666.229901.peg.183 CDS AJMG02000003.1 93784 92315 -1 - 1470 Sodium-dependent transporter - none -
fig|6666666.229901.peg.184 CDS AJMG02000003.1 93894 94781 3 + 888 RuBisCO operon transcriptional regulator CO2 uptake, carboxysome
fig|6666666.229901.peg.185 CDS AJMG02000003.1 94998 97313 3 + 2316 Transcription accessory protein (S1 RNA-binding domain) CBSS-243265.1.peg.198;
Cell division-ribosomal stress proteins cluster;
Transcription factors bacterial
fig|6666666.229901.peg.186 CDS AJMG02000003.1 97663 97361 -1 - 303 L-xylulose/3-keto-L-gulonate kinase (EC 2.7.1.-) L-ascorbate utilization (and related gene clusters)
fig|6666666.229901.peg.187 CDS AJMG02000003.1 98818 97742 -1 - 1077 L-xylulose/3-keto-L-gulonate kinase (EC 2.7.1.-) L-ascorbate utilization (and related gene clusters)
fig|6666666.229901.peg.188 CDS AJMG02000003.1 99852 98824 -3 - 1029 Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229901.peg.189 CDS AJMG02000003.1 101355 99868 -3 - 1488 Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229901.peg.190 CDS AJMG02000003.1 101518 102468 1 + 951 Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229901.peg.191 CDS AJMG02000004.1 72 242 3 + 171 [Citrate [pro-3S]-lyase] ligase (EC 6.2.1.22) Citrate Metabolism, Transport, and Regulation
fig|6666666.229901.peg.192 CDS AJMG02000004.1 282 569 3 + 288 Citrate lyase gamma chain, acyl carrier protein (EC 4.1.3.6) Citrate Metabolism, Transport, and Regulation
fig|6666666.229901.peg.193 CDS AJMG02000004.1 566 1441 2 + 876 Citrate lyase beta chain (EC 4.1.3.6) Citrate Metabolism, Transport, and Regulation
fig|6666666.229901.peg.194 CDS AJMG02000004.1 1456 2958 1 + 1503 Citrate lyase alpha chain (EC 4.1.3.6) Citrate Metabolism, Transport, and Regulation
fig|6666666.229901.peg.195 CDS AJMG02000004.1 3152 4564 2 + 1413 2-(5@1@1-triphosphoribosyl)-3@1-dephosphocoenzyme-A synthase (EC 2.7.8.25) Citrate Metabolism, Transport, and Regulation
fig|6666666.229901.peg.196 CDS AJMG02000004.1 4551 5984 3 + 1434 2-oxoglutarate/malate translocator - none -
fig|6666666.229901.peg.197 CDS AJMG02000004.1 6263 7762 2 + 1500 Putative ATP /GTP binding protein - none -
fig|6666666.229901.peg.198 CDS AJMG02000004.1 9058 8027 -1 - 1032 Aldose 1-epimerase (EC 5.1.3.3) Lactose and Galactose Uptake and Utilization;
Maltose and Maltodextrin Utilization
fig|6666666.229901.peg.199 CDS AJMG02000004.1 10206 9052 -3 - 1155 Galactokinase (EC 2.7.1.6) Lactose and Galactose Uptake and Utilization
fig|6666666.229901.peg.200 CDS AJMG02000004.1 11316 10273 -3 - 1044 Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10) Lactose and Galactose Uptake and Utilization
fig|6666666.229901.peg.201 CDS AJMG02000004.1 11568 12581 3 + 1014 Galactose operon repressor, GalR-LacI family of transcriptional regulators Lactose and Galactose Uptake and Utilization
fig|6666666.229901.peg.202 CDS AJMG02000004.1 12796 13788 1 + 993 Galactose/methyl galactoside ABC transport system, D-galactose-binding periplasmic protein MglB (TC 3.A.1.2.3) Bacterial Chemotaxis;
Lactose and Galactose Uptake and Utilization
fig|6666666.229901.peg.203 CDS AJMG02000004.1 13863 15401 3 + 1539 Galactose/methyl galactoside ABC transport system, ATP-binding protein MglA (EC 3.6.3.17) Lactose and Galactose Uptake and Utilization
fig|6666666.229901.peg.204 CDS AJMG02000004.1 15420 16430 3 + 1011 Galactose/methyl galactoside ABC transport system, permease protein MglC (TC 3.A.1.2.3) Lactose and Galactose Uptake and Utilization
fig|6666666.229901.peg.205 CDS AJMG02000004.1 18363 16504 -3 - 1860 Aerobic respiration control sensor protein arcB (EC 2.7.3.-) - none -
fig|6666666.229901.peg.206 CDS AJMG02000004.1 18389 18523 2 + 135 hypothetical protein - none -
fig|6666666.229901.peg.207 CDS AJMG02000004.1 19724 18504 -2 - 1221 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41) Fatty Acid Biosynthesis FASII
fig|6666666.229901.peg.208 CDS AJMG02000004.1 19894 21912 1 + 2019 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) CBSS-354.1.peg.876;
RNA methylation;
Riboflavin, FMN and FAD metabolism in plants;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229901.peg.209 CDS AJMG02000004.1 22102 25173 1 + 3072 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229901.peg.210 CDS AJMG02000004.1 25862 25284 -2 - 579 Heat shock protein GrpE GroEL GroES;
Heat shock dnaK gene cluster extended;
Protein chaperones
fig|6666666.229901.peg.211 CDS AJMG02000004.1 25830 25958 3 + 129 hypothetical protein - none -
fig|6666666.229901.peg.212 CDS AJMG02000004.1 26003 26920 2 + 918 NAD kinase (EC 2.7.1.23) NAD and NADP cofactor biosynthesis global
fig|6666666.229901.peg.213 CDS AJMG02000004.1 26994 28670 3 + 1677 DNA repair protein RecN DNA repair, bacterial
fig|6666666.229901.peg.214 CDS AJMG02000004.1 29156 28737 -2 - 420 Outer membrane protein W precursor - none -
fig|6666666.229901.peg.215 CDS AJMG02000004.1 29384 29160 -2 - 225 hypothetical protein - none -
fig|6666666.229901.peg.216 CDS AJMG02000004.1 29656 30414 1 + 759 Membrane protein involved in the export of O-antigen and teichoic acid - none -
fig|6666666.229901.peg.217 CDS AJMG02000004.1 30420 30971 3 + 552 Intracellular septation protein IspA CBSS-211586.9.peg.2729;
Intracellular septation in Enterobacteria
fig|6666666.229901.peg.218 CDS AJMG02000004.1 30975 31445 3 + 471 Acyl-CoA thioesterase YciA, involved in membrane biogenesis CBSS-211586.9.peg.2729;
Intracellular septation in Enterobacteria
fig|6666666.229901.peg.219 CDS AJMG02000004.1 31448 31744 2 + 297 YciL protein Broadly distributed proteins not in subsystems;
CBSS-211586.9.peg.2729
fig|6666666.229901.peg.220 CDS AJMG02000004.1 31950 34166 3 + 2217 Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) Murein Hydrolases
fig|6666666.229901.peg.221 CDS AJMG02000004.1 34199 34507 2 + 309 Transcriptional repressor protein TrpR Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate);
Tryptophan synthesis
fig|6666666.229901.peg.222 CDS AJMG02000004.1 34485 35258 3 + 774 Monofunctional biosynthetic peptidoglycan transglycosylase (EC 2.4.2.-) Peptidoglycan Biosynthesis
fig|6666666.229901.peg.223 CDS AJMG02000004.1 35768 35514 -2 - 255 hypothetical protein - none -
fig|6666666.229901.peg.224 CDS AJMG02000004.1 36654 36349 -3 - 306 hypothetical protein - none -
fig|6666666.229901.peg.225 CDS AJMG02000004.1 37210 36623 -1 - 588 Integrase - none -
fig|6666666.229901.peg.226 CDS AJMG02000004.1 38024 37686 -2 - 339 Preprotein translocase subunit SecG (TC 3.A.5.1.1) CBSS-331978.3.peg.2915;
Murein hydrolase regulation and cell death
fig|6666666.229901.peg.227 CDS AJMG02000004.1 38183 38052 -2 - 132 hypothetical protein - none -
fig|6666666.229901.peg.228 CDS AJMG02000004.1 38622 38197 -3 - 426 DNA topoisomerase III (EC 5.99.1.2) DNA processing cluster;
DNA topoisomerases, Type I, ATP-independent
fig|6666666.229901.peg.229 CDS AJMG02000004.1 40135 38660 -1 - 1476 DNA topoisomerase III (EC 5.99.1.2) DNA processing cluster;
DNA topoisomerases, Type I, ATP-independent
fig|6666666.229901.peg.230 CDS AJMG02000004.1 40769 40167 -2 - 603 Recombination protein RecR DNA processing cluster;
DNA repair, bacterial RecFOR pathway
fig|6666666.229901.peg.231 CDS AJMG02000004.1 41297 40854 -2 - 444 FIG000557: hypothetical protein co-occurring with RecR DNA processing cluster
fig|6666666.229901.peg.232 CDS AJMG02000004.1 41368 42438 1 + 1071 Phosphoesterase (EC 3.1.-.-) - none -
fig|6666666.229901.peg.233 CDS AJMG02000004.1 42508 43401 1 + 894 Iron(III) dicitrate transport system, periplasmic iron-binding protein FecB (TC 3.A.1.14.1) - none -
fig|6666666.229901.peg.234 CDS AJMG02000004.1 43401 44390 3 + 990 Iron(III) dicitrate transport system permease protein FecC (TC 3.A.1.14.1) - none -
fig|6666666.229901.peg.235 CDS AJMG02000004.1 44390 45373 2 + 984 Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1) - none -
fig|6666666.229901.peg.236 CDS AJMG02000004.1 45373 46140 1 + 768 Iron(III) dicitrate transport ATP-binding protein FecE (TC 3.A.1.14.1) - none -
fig|6666666.229901.peg.237 CDS AJMG02000004.1 47177 46206 -2 - 972 Translation elongation factor P Lys34:lysine transferase Translation elongation factor P lysylation
fig|6666666.229901.peg.238 CDS AJMG02000004.1 47485 49293 1 + 1809 Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) Succinate dehydrogenase
fig|6666666.229901.peg.239 CDS AJMG02000004.1 49298 50068 2 + 771 Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) 5-FCL-like protein;
Succinate dehydrogenase
fig|6666666.229901.peg.240 CDS AJMG02000004.1 50080 50472 1 + 393 Fumarate reductase subunit C Succinate dehydrogenase
fig|6666666.229901.peg.241 CDS AJMG02000004.1 50482 50826 1 + 345 Fumarate reductase subunit D Succinate dehydrogenase
fig|6666666.229901.peg.242 CDS AJMG02000004.1 53070 50923 -3 - 2148 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) RNA methylation
fig|6666666.229901.peg.243 CDS AJMG02000004.1 53341 54369 1 + 1029 Alcohol dehydrogenase (EC 1.1.1.1) 5-FCL-like protein;
Butanol Biosynthesis;
Fermentations: Mixed acid;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229901.peg.244 CDS AJMG02000004.1 55662 54448 -3 - 1215 ATPase component BioM of energizing module of biotin ECF transporter Biotin biosynthesis;
Biotin synthesis cluster;
ECF class transporters
fig|6666666.229901.peg.245 CDS AJMG02000004.1 56484 55780 -3 - 705 Queuosine Biosynthesis QueC ATPase Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229901.peg.246 CDS AJMG02000004.1 56655 56518 -3 - 138 Queuosine Biosynthesis QueC ATPase Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229901.peg.247 CDS AJMG02000004.1 56839 57303 1 + 465 FIG00710847: hypothetical protein - none -
fig|6666666.229901.peg.248 CDS AJMG02000004.1 57276 58100 3 + 825 FIG00711691: hypothetical protein - none -
fig|6666666.229901.peg.249 CDS AJMG02000004.1 59432 58608 -2 - 825 3@1,5@1-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17) cAMP signaling in bacteria
fig|6666666.229901.peg.250 CDS AJMG02000004.1 60106 59483 -1 - 624 ADP-ribose pyrophosphatase (EC 3.6.1.13) CBSS-216591.1.peg.168;
NAD and NADP cofactor biosynthesis global;
Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229901.peg.251 CDS AJMG02000004.1 61032 60352 -3 - 681 FIG009095: D,D-carboxypeptidase family protein CBSS-584.1.peg.1352
fig|6666666.229901.peg.252 CDS AJMG02000004.1 62167 61034 -1 - 1134 N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18) A Glutathione-dependent Thiol Reductase Associated with a Step in Lysine Biosynthesis;
CBSS-584.1.peg.1352;
Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229901.peg.253 CDS AJMG02000004.1 62648 62304 -2 - 345 FIG138056: a glutathione-dependent thiol reductase A Glutathione-dependent Thiol Reductase Associated with a Step in Lysine Biosynthesis;
CBSS-584.1.peg.1352
fig|6666666.229901.peg.254 CDS AJMG02000004.1 64594 62714 -1 - 1881 Chaperone protein HtpG Protein chaperones
fig|6666666.229901.peg.255 CDS AJMG02000004.1 65174 64728 -2 - 447 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) Chorismate Synthesis;
Chorismate Synthesis;
Phenylalanine and Tyrosine Branches from Chorismate;
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229901.peg.256 CDS AJMG02000004.1 65889 65155 -3 - 735 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) Chorismate Synthesis;
Chorismate Synthesis;
Phenylalanine and Tyrosine Branches from Chorismate;
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229901.peg.257 CDS AJMG02000004.1 67004 66087 -2 - 918 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC 3.5.1.108) - none -
fig|6666666.229901.peg.258 CDS AJMG02000004.1 68325 67042 -3 - 1284 Cell division protein FtsZ (EC 3.4.24.-) Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ;
cell division core of larger cluster
fig|6666666.229901.peg.259 CDS AJMG02000004.1 69689 68409 -2 - 1281 Cell division protein FtsA Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ;
cell division core of larger cluster
fig|6666666.229901.peg.260 CDS AJMG02000004.1 70481 69714 -2 - 768 Cell division protein FtsQ Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ;
cell division core of larger cluster
fig|6666666.229901.peg.261 CDS AJMG02000004.1 71407 70478 -1 - 930 D-alanine--D-alanine ligase (EC 6.3.2.4) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo;
cell division cluster containing FtsQ
fig|6666666.229901.peg.262 CDS AJMG02000004.1 72850 71420 -1 - 1431 UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo;
cell division cluster containing FtsQ
fig|6666666.229901.peg.263 CDS AJMG02000004.1 73985 72921 -2 - 1065 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) Peptidoglycan Biosynthesis;
cell division core of larger cluster
fig|6666666.229901.peg.264 CDS AJMG02000004.1 75216 74026 -3 - 1191 Cell division protein FtsW Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ
fig|6666666.229901.peg.265 CDS AJMG02000004.1 76535 75231 -2 - 1305 UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC 6.3.2.9) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo
fig|6666666.229901.peg.266 CDS AJMG02000004.1 77647 76562 -1 - 1086 Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC 2.7.8.13) Peptidoglycan Biosynthesis
fig|6666666.229901.peg.267 CDS AJMG02000004.1 79020 77641 -3 - 1380 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase (EC 6.3.2.10) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo
fig|6666666.229901.peg.268 CDS AJMG02000004.1 80493 79027 -3 - 1467 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo
fig|6666666.229901.peg.269 CDS AJMG02000004.1 82334 80511 -2 - 1824 Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129) 16S rRNA modification within P site of ribosome;
Bacterial Cell Division;
Bacterial Cytoskeleton;
CBSS-83331.1.peg.3039;
Peptidoglycan Biosynthesis
fig|6666666.229901.peg.270 CDS AJMG02000004.1 82669 82352 -1 - 318 Cell division protein FtsL 16S rRNA modification within P site of ribosome;
Bacterial Cell Division;
Bacterial Cytoskeleton;
Stationary phase repair cluster
fig|6666666.229901.peg.271 CDS AJMG02000004.1 83637 82669 -3 - 969 rRNA small subunit methyltransferase H 16S rRNA modification within P site of ribosome;
Bacterial Cell Division
fig|6666666.229901.peg.272 CDS AJMG02000004.1 84205 83747 -1 - 459 Cell division protein MraZ 16S rRNA modification within P site of ribosome;
Bacterial Cell Division;
Bacterial Cytoskeleton
fig|6666666.229901.peg.273 CDS AJMG02000004.1 86067 84469 -3 - 1599 Carbon starvation protein A Carbon Starvation
fig|6666666.229901.peg.274 CDS AJMG02000004.1 87295 86609 -1 - 687 Arginine ABC transporter, permease protein ArtM Arginine and Ornithine Degradation
fig|6666666.229901.peg.275 CDS AJMG02000004.1 87957 87295 -3 - 663 Arginine ABC transporter, permease protein ArtQ Arginine and Ornithine Degradation
fig|6666666.229901.peg.276 CDS AJMG02000004.1 88681 87962 -1 - 720 Arginine ABC transporter, periplasmic arginine-binding protein ArtI Arginine and Ornithine Degradation
fig|6666666.229901.peg.277 CDS AJMG02000004.1 89436 88702 -3 - 735 Arginine ABC transporter, ATP-binding protein ArtP Arginine and Ornithine Degradation
fig|6666666.229901.peg.278 CDS AJMG02000004.1 90161 89577 -2 - 585 Phosphoheptose isomerase 1 (EC 5.3.1.-) Capsular heptose biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.229901.peg.279 CDS AJMG02000004.1 93721 90263 -1 - 3459 Transcription-repair coupling factor Cell division-ribosomal stress proteins cluster;
Transcription factors bacterial;
Transcription repair cluster
fig|6666666.229901.peg.280 CDS AJMG02000004.1 94022 93849 -2 - 174 hypothetical protein - none -
fig|6666666.229901.peg.281 CDS AJMG02000004.1 95985 94063 -3 - 1923 Predicted P-loop ATPase fused to an acetyltransferase COG1444 tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229901.peg.282 CDS AJMG02000004.1 96687 95989 -3 - 699 unknown - none -
fig|6666666.229901.peg.283 CDS AJMG02000004.1 97313 96849 -2 - 465 Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly CBSS-56780.10.peg.1536;
Glycyl-tRNA synthetase containing cluster;
tRNA-methylthiotransferase containing cluster
fig|6666666.229901.peg.284 CDS AJMG02000004.1 97914 97801 -3 - 114 hypothetical protein - none -
fig|6666666.229901.peg.285 CDS AJMG02000004.1 97880 98110 2 + 231 Flp pilus assembly protein, pilin Flp Widespread colonization island
fig|6666666.229901.peg.286 CDS AJMG02000004.1 98703 98879 3 + 177 Type IV prepilin peptidase TadV/CpaA Widespread colonization island
fig|6666666.229901.peg.287 CDS AJMG02000004.1 98930 99754 2 + 825 Flp pilus assembly protein RcpC/CpaB Widespread colonization island
fig|6666666.229901.peg.288 CDS AJMG02000004.1 99756 101138 3 + 1383 Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly Widespread colonization island
fig|6666666.229901.peg.289 CDS AJMG02000004.1 101135 101638 2 + 504 Flp pilus assembly protein RcpB Widespread colonization island
fig|6666666.229901.peg.290 CDS AJMG02000004.1 101654 102778 2 + 1125 Type II/IV secretion system ATPase TadZ/CpaE, associated with Flp pilus assembly Widespread colonization island
fig|6666666.229901.peg.291 CDS AJMG02000004.1 102792 104072 3 + 1281 Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily Widespread colonization island
fig|6666666.229901.peg.292 CDS AJMG02000004.1 104072 104959 2 + 888 Flp pilus assembly protein TadB Widespread colonization island
fig|6666666.229901.peg.293 CDS AJMG02000004.1 104956 105822 1 + 867 Type II/IV secretion system protein TadC, associated with Flp pilus assembly Widespread colonization island
fig|6666666.229901.peg.294 CDS AJMG02000004.1 105812 106573 2 + 762 Flp pilus assembly protein TadD, contains TPR repeat Widespread colonization island
fig|6666666.229901.peg.295 CDS AJMG02000004.1 107826 109463 3 + 1638 Protein TadG, associated with Flp pilus assembly Widespread colonization island
fig|6666666.229901.peg.296 CDS AJMG02000004.1 110189 110016 -2 - 174 Mobile element protein - none -
fig|6666666.229901.peg.297 CDS AJMG02000004.1 110677 110441 -1 - 237 Mobile element protein - none -
fig|6666666.229901.peg.298 CDS AJMG02000004.1 110837 110721 -2 - 117 hypothetical protein - none -
fig|6666666.229901.peg.299 CDS AJMG02000004.1 113163 111661 -3 - 1503 Sodium-dependent transporter - none -
fig|6666666.229901.peg.300 CDS AJMG02000004.1 113579 113854 2 + 276 tRNA pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229901.peg.301 CDS AJMG02000004.1 113856 114050 3 + 195 hypothetical protein - none -
fig|6666666.229901.peg.302 CDS AJMG02000004.1 114010 114306 1 + 297 Membrane protein, MgtC/SapB family - none -
fig|6666666.229901.peg.303 CDS AJMG02000004.1 115247 114345 -2 - 903 hypothetical protein - none -
fig|6666666.229901.peg.304 CDS AJMG02000004.1 117152 115293 -2 - 1860 Selenocysteine-specific translation elongation factor Selenocysteine metabolism
fig|6666666.229901.peg.305 CDS AJMG02000004.1 118543 117149 -1 - 1395 L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1) Selenocysteine metabolism
fig|6666666.229901.peg.306 CDS AJMG02000004.1 118687 120402 1 + 1716 Prolyl-tRNA synthetase (EC 6.1.1.15), bacterial type tRNA aminoacylation, Pro
fig|6666666.229901.peg.307 CDS AJMG02000004.1 120487 120675 1 + 189 Ethidium bromide-methyl viologen resistance protein EmrE - none -
fig|6666666.229901.peg.308 CDS AJMG02000004.1 120715 120969 1 + 255 YgfY COG2938 - none -
fig|6666666.229901.peg.309 CDS AJMG02000004.1 121102 121677 1 + 576 RNA polymerase sigma factor RpoE Transcription initiation, bacterial sigma factors
fig|6666666.229901.peg.310 CDS AJMG02000004.1 121716 122300 3 + 585 Sigma factor RpoE negative regulatory protein RseA Periplasmic Stress Response;
Transcription initiation, bacterial sigma factors
fig|6666666.229901.peg.311 CDS AJMG02000004.1 122383 123339 1 + 957 Sigma factor RpoE negative regulatory protein RseB precursor Periplasmic Stress Response;
Transcription initiation, bacterial sigma factors
fig|6666666.229901.peg.312 CDS AJMG02000004.1 123349 123786 1 + 438 Sigma factor RpoE regulatory protein RseC Transcription initiation, bacterial sigma factors
fig|6666666.229901.peg.313 CDS AJMG02000004.1 123867 124379 3 + 513 Molybdopterin-guanine dinucleotide biosynthesis protein MobB Molybdenum cofactor biosynthesis;
ar-431-EC Molybdopterin-guanine dinucleotide biosynthesis
fig|6666666.229901.peg.314 CDS AJMG02000004.1 124473 125228 3 + 756 Short chain dehydrogenase - none -
fig|6666666.229901.peg.315 CDS AJMG02000004.1 126768 125308 -3 - 1461 Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3) Dipeptidases (EC 3.4.13.-);
Recycling of Peptidoglycan Amino Acids
fig|6666666.229901.peg.316 CDS AJMG02000004.1 126883 127347 1 + 465 Xanthine-guanine phosphoribosyltransferase (EC 2.4.2.22) Purine conversions
fig|6666666.229901.peg.317 CDS AJMG02000004.1 129778 127436 -1 - 2343 Outer membrane protein Imp, required for envelope biogenesis / Organic solvent tolerance protein precursor Lipopolysaccharide assembly
fig|6666666.229901.peg.318 CDS AJMG02000004.1 130404 129844 -3 - 561 DNA-3-methyladenine glycosylase (EC 3.2.2.20) CBSS-326442.4.peg.1852;
DNA Repair Base Excision
fig|6666666.229901.peg.319 CDS AJMG02000004.1 130603 131208 1 + 606 probable integral membrane protein Cj0014c - none -
fig|6666666.229901.peg.320 CDS AJMG02000004.1 132511 131261 -1 - 1251 Diaminopimelate decarboxylase (EC 4.1.1.20) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229901.peg.321 CDS AJMG02000004.1 132648 132529 -3 - 120 hypothetical protein - none -
fig|6666666.229901.peg.322 CDS AJMG02000004.1 132771 133085 3 + 315 Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly Biogenesis of cytochrome c oxidases
fig|6666666.229901.peg.323 CDS AJMG02000004.1 133082 134971 2 + 1890 ATP-dependent DNA helicase RecQ DNA repair, bacterial RecFOR pathway
fig|6666666.229901.peg.324 CDS AJMG02000004.1 135068 137488 2 + 2421 DNA gyrase subunit B (EC 5.99.1.3) Cell Division Subsystem including YidCD;
DNA gyrase subunits;
DNA replication cluster 1;
DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.229901.peg.325 CDS AJMG02000004.1 138457 137543 -1 - 915 Pantothenate kinase (EC 2.7.1.33) Coenzyme A Biosynthesis
fig|6666666.229901.peg.326 CDS AJMG02000005.1 931 803 -1 - 129 hypothetical protein - none -
fig|6666666.229901.peg.327 CDS AJMG02000005.1 1011 1907 3 + 897 Magnesium and cobalt efflux protein CorC CBSS-56780.10.peg.1536;
Copper homeostasis: copper tolerance;
Glycyl-tRNA synthetase containing cluster;
Magnesium transport;
tRNA-methylthiotransferase containing cluster
fig|6666666.229901.peg.328 CDS AJMG02000005.1 2300 3844 2 + 1545 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE Copper homeostasis: copper tolerance;
Lipoprotein Biosynthesis;
tRNA-methylthiotransferase containing cluster;
tRNA-methylthiotransferase containing cluster
fig|6666666.229901.peg.329 CDS AJMG02000005.1 4125 3907 -3 - 219 Translation initiation factor 1 Translation initiation factors bacterial
fig|6666666.229901.peg.330 CDS AJMG02000005.1 4180 4302 1 + 123 hypothetical protein - none -
fig|6666666.229901.peg.331 CDS AJMG02000005.1 4345 5652 1 + 1308 Peptidase B (EC 3.4.11.23) Aminopeptidases (EC 3.4.11.-)
fig|6666666.229901.peg.332 CDS AJMG02000005.1 5664 6089 3 + 426 Nucleoside diphosphate kinase (EC 2.7.4.6) CBSS-498211.3.peg.1415;
Purine conversions;
pyrimidine conversions
fig|6666666.229901.peg.333 CDS AJMG02000005.1 6225 7370 3 + 1146 Beta-hexosaminidase (EC 3.2.1.52) Chitin and N-acetylglucosamine utilization
fig|6666666.229901.peg.334 CDS AJMG02000005.1 7363 7482 1 + 120 hypothetical protein - none -
fig|6666666.229901.peg.335 CDS AJMG02000005.1 8572 7460 -1 - 1113 Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like Scaffold proteins for [4Fe-4S] cluster assembly (MRP family)
fig|6666666.229901.peg.336 CDS AJMG02000005.1 8745 10805 3 + 2061 Methionyl-tRNA synthetase (EC 6.1.1.10) Scaffold proteins for [4Fe-4S] cluster assembly (MRP family);
tRNA aminoacylation, Met
fig|6666666.229901.peg.337 CDS AJMG02000005.1 11133 10939 -3 - 195 Believed to be involved in assembly of Fe-S clusters tRNA modification Bacteria
fig|6666666.229901.peg.338 CDS AJMG02000005.1 11474 11133 -2 - 342 Ferredoxin, 2Fe-2S Alanine biosynthesis;
Soluble cytochromes and functionally related electron carriers;
tRNA modification Bacteria
fig|6666666.229901.peg.339 CDS AJMG02000005.1 13345 11486 -1 - 1860 Chaperone protein HscA Alanine biosynthesis;
Protein chaperones;
tRNA modification Bacteria
fig|6666666.229901.peg.340 CDS AJMG02000005.1 13887 13366 -3 - 522 Chaperone protein HscB Protein chaperones;
tRNA modification Bacteria
fig|6666666.229901.peg.341 CDS AJMG02000005.1 14222 13899 -2 - 324 Iron binding protein IscA for iron-sulfur cluster assembly Alanine biosynthesis;
tRNA modification Bacteria
fig|6666666.229901.peg.342 CDS AJMG02000005.1 14737 14354 -1 - 384 Iron-sulfur cluster assembly scaffold protein IscU Alanine biosynthesis;
tRNA modification Bacteria
fig|6666666.229901.peg.343 CDS AJMG02000005.1 16011 14797 -3 - 1215 Cysteine desulfurase (EC 2.8.1.7), IscS subfamily Alanine biosynthesis;
Thiamin biosynthesis;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.229901.peg.344 CDS AJMG02000005.1 16538 16065 -2 - 474 Iron-sulfur cluster regulator IscR Alanine biosynthesis;
Rrf2 family transcriptional regulators
fig|6666666.229901.peg.345 CDS AJMG02000005.1 17341 16616 -1 - 726 tRNA:Cm32/Um32 methyltransferase RNA methylation;
tRNA modification Bacteria
fig|6666666.229901.peg.346 CDS AJMG02000005.1 17492 18292 2 + 801 Inositol-1-monophosphatase (EC 3.1.3.25) - none -
fig|6666666.229901.peg.347 CDS AJMG02000005.1 20456 18345 -2 - 2112 unknown - none -
fig|6666666.229901.peg.348 CDS AJMG02000005.1 21781 20735 -1 - 1047 Fe(3+) ions import ATP-binding protein fbpC (EC 3.6.3.30) - none -
fig|6666666.229901.peg.349 CDS AJMG02000005.1 23854 21797 -1 - 2058 Ferric iron ABC transporter, permease protein Iron acquisition in Streptococcus
fig|6666666.229901.peg.350 CDS AJMG02000005.1 24634 23882 -1 - 753 Ferric iron ABC transporter, iron-binding protein Iron acquisition in Streptococcus
fig|6666666.229901.peg.351 CDS AJMG02000005.1 26127 25087 -3 - 1041 Ferric iron ABC transporter, iron-binding protein Iron acquisition in Streptococcus
fig|6666666.229901.peg.352 CDS AJMG02000005.1 26436 27086 3 + 651 Uridine kinase (EC 2.7.1.48) [C1] pyrimidine conversions
fig|6666666.229901.peg.353 CDS AJMG02000005.1 27096 27680 3 + 585 Deoxycytidine triphosphate deaminase (EC 3.5.4.13) pyrimidine conversions
fig|6666666.229901.peg.354 CDS AJMG02000005.1 27681 28883 3 + 1203 FIG00696476: hypothetical protein - none -
fig|6666666.229901.peg.355 CDS AJMG02000005.1 28885 30081 1 + 1197 Sugar efflux transporter SotB - none -
fig|6666666.229901.peg.356 CDS AJMG02000005.1 31683 30151 -3 - 1533 GTP-binding protein EngA CBSS-290633.1.peg.1906;
CBSS-498211.3.peg.1415;
Universal GTPases
fig|6666666.229901.peg.357 CDS AJMG02000005.1 31971 32954 3 + 984 DnaJ-class molecular chaperone CbpA Protein chaperones
fig|6666666.229901.peg.358 CDS AJMG02000005.1 32977 33267 1 + 291 hypothetical protein - none -
fig|6666666.229901.peg.359 CDS AJMG02000005.1 34630 33332 -1 - 1299 Adenylosuccinate synthetase (EC 6.3.4.4) Purine conversions
fig|6666666.229901.peg.360 CDS AJMG02000005.1 35683 34718 -1 - 966 tRNA (5-methoxyuridine) 34 synthase tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229901.peg.361 CDS AJMG02000005.1 37217 35697 -2 - 1521 Proline/sodium symporter PutP (TC 2.A.21.2.1) @ Propionate/sodium symporter - none -
fig|6666666.229901.peg.362 CDS AJMG02000005.1 37358 38833 2 + 1476 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) Bacterial Cell Division;
CBSS-354.1.peg.2917;
RNA processing and degradation, bacterial
fig|6666666.229901.peg.363 CDS AJMG02000005.1 38950 39597 1 + 648 Glutaredoxin 2 Glutaredoxins;
Glutathione: Redox cycle
fig|6666666.229901.peg.364 CDS AJMG02000005.1 39613 40311 1 + 699 NAD-dependent protein deacetylase of SIR2 family Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229901.peg.365 CDS AJMG02000005.1 40384 40755 1 + 372 Mobile element protein - none -
fig|6666666.229901.peg.366 CDS AJMG02000005.1 40958 41284 2 + 327 Mobile element protein - none -
fig|6666666.229901.peg.367 CDS AJMG02000005.1 42195 41653 -3 - 543 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes - none -
fig|6666666.229901.peg.368 CDS AJMG02000005.1 42549 42668 3 + 120 Haemophilus-specific protein, uncharacterized - none -
fig|6666666.229901.peg.369 CDS AJMG02000005.1 42982 43161 1 + 180 hypothetical protein - none -
fig|6666666.229901.peg.370 CDS AJMG02000005.1 43866 43988 3 + 123 hypothetical protein - none -
fig|6666666.229901.peg.371 CDS AJMG02000005.1 43991 44335 2 + 345 Programmed cell death toxin MazF - none -
fig|6666666.229901.peg.372 CDS AJMG02000005.1 44904 45572 3 + 669 Cytolethal distending toxin subunit A Cytolethal distending toxin of Campylobacter jejuni;
Cytolethal distending toxins
fig|6666666.229901.peg.373 CDS AJMG02000005.1 45587 46438 2 + 852 Cytolethal distending toxin subunit B Cytolethal distending toxin of Campylobacter jejuni;
Cytolethal distending toxins
fig|6666666.229901.peg.374 CDS AJMG02000005.1 46449 47009 3 + 561 Cytolethal distending toxin subunit C Cytolethal distending toxin of Campylobacter jejuni;
Cytolethal distending toxins
fig|6666666.229901.peg.375 CDS AJMG02000005.1 48370 48227 -1 - 144 hypothetical protein - none -
fig|6666666.229901.peg.376 CDS AJMG02000005.1 49582 49025 -1 - 558 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229901.peg.377 CDS AJMG02000005.1 49837 51027 1 + 1191 Cystathionine beta-lyase (EC 4.4.1.8) Methionine Biosynthesis
fig|6666666.229901.peg.378 CDS AJMG02000005.1 51241 52293 1 + 1053 Outer membrane protein P2 precursor (OMP P2) - none -
fig|6666666.229901.peg.379 CDS AJMG02000005.1 52437 52694 3 + 258 hypothetical protein - none -
fig|6666666.229901.peg.380 CDS AJMG02000005.1 52694 53041 2 + 348 Programmed cell death toxin ChpB - none -
fig|6666666.229901.peg.381 CDS AJMG02000005.1 54246 53119 -3 - 1128 Chaperone protein DnaJ GroEL GroES;
Heat shock dnaK gene cluster extended;
Protein chaperones
fig|6666666.229901.peg.382 CDS AJMG02000005.1 56581 54680 -1 - 1902 Chaperone protein DnaK GroEL GroES;
Heat shock dnaK gene cluster extended;
Protein chaperones
fig|6666666.229901.peg.383 CDS AJMG02000005.1 56867 58300 2 + 1434 Putative GTP-binding protein YdgA - none -
fig|6666666.229901.peg.384 CDS AJMG02000005.1 60393 58660 -3 - 1734 Arginyl-tRNA synthetase (EC 6.1.1.19) tRNA aminoacylation, Arg
fig|6666666.229901.peg.385 CDS AJMG02000005.1 60490 61077 1 + 588 Protein yecM - none -
fig|6666666.229901.peg.386 CDS AJMG02000005.1 61119 61574 3 + 456 Outer membrane lipoprotein - none -
fig|6666666.229901.peg.387 CDS AJMG02000005.1 61714 62796 1 + 1083 Peptide chain release factor 1 A Gammaproteobacteria Cluster Relating to Translation;
CBSS-216600.3.peg.802;
Translation termination factors bacterial;
YrdC-YciO-Sua5 protein family
fig|6666666.229901.peg.388 CDS AJMG02000005.1 62836 63735 1 + 900 Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2 A Gammaproteobacteria Cluster Relating to Translation;
CBSS-216600.3.peg.802;
Translation termination factors bacterial;
YrdC-YciO-Sua5 protein family
fig|6666666.229901.peg.389 CDS AJMG02000005.1 63745 64599 1 + 855 2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase (EC 2.5.1.55) A Gammaproteobacteria Cluster Relating to Translation
fig|6666666.229901.peg.390 CDS AJMG02000005.1 64779 65288 3 + 510 probable lipoprotein NlpC - none -
fig|6666666.229901.peg.391 CDS AJMG02000005.1 65936 65685 -2 - 252 Protein YcgL CBSS-243277.1.peg.4359
fig|6666666.229901.peg.392 CDS AJMG02000005.1 66020 66682 2 + 663 Septum site-determining protein MinC Bacterial Cell Division;
Bacterial Cytoskeleton;
Septum site-determining cluster Min
fig|6666666.229901.peg.393 CDS AJMG02000005.1 67249 66704 -1 - 546 FIG00696317: hypothetical protein - none -
fig|6666666.229901.peg.394 CDS AJMG02000005.1 67940 67473 -2 - 468 Phosphohistidine phosphatase SixA - none -
fig|6666666.229901.peg.395 CDS AJMG02000005.1 69290 67953 -2 - 1338 Phosphoglucosamine mutase (EC 5.4.2.10) Sialic Acid Metabolism;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229901.peg.396 CDS AJMG02000005.1 70095 69319 -3 - 777 Dihydropteroate synthase (EC 2.5.1.15) Folate Biosynthesis;
Folate biosynthesis cluster
fig|6666666.229901.peg.397 CDS AJMG02000005.1 71350 70316 -1 - 1035 DNA polymerase IV (EC 2.7.7.7) DNA repair, bacterial
fig|6666666.229901.peg.398 CDS AJMG02000005.1 71728 71474 -1 - 255 hypothetical protein - none -
fig|6666666.229901.peg.399 CDS AJMG02000005.1 72150 72599 3 + 450 ImpA - none -
fig|6666666.229901.peg.400 CDS AJMG02000005.1 73023 72859 -3 - 165 hypothetical protein - none -
fig|6666666.229901.peg.401 CDS AJMG02000005.1 74784 73318 -3 - 1467 Inosine-5@1-monophosphate dehydrogenase (EC 1.1.1.205) Purine conversions;
Purine salvage cluster
fig|6666666.229901.peg.402 CDS AJMG02000005.1 74926 75858 1 + 933 Biotin operon repressor / Biotin-protein ligase (EC 6.3.4.15) Biotin biosynthesis;
Biotin biosynthesis;
Biotin synthesis cluster;
Biotin synthesis cluster
fig|6666666.229901.peg.403 CDS AJMG02000005.1 75945 76148 3 + 204 Osmotically inducible lipoprotein B precursor Osmotic stress cluster
fig|6666666.229901.peg.404 CDS AJMG02000006.1 311 1264 2 + 954 Transaldolase (EC 2.2.1.2) Fructose utilization;
Pentose phosphate pathway
fig|6666666.229901.peg.405 CDS AJMG02000006.1 1283 3394 2 + 2112 Transketolase (EC 2.2.1.1) Pentose phosphate pathway
fig|6666666.229901.peg.406 CDS AJMG02000006.1 3855 3466 -3 - 390 Endoribonuclease L-PSP - none -
fig|6666666.229901.peg.407 CDS AJMG02000006.1 4390 3932 -1 - 459 Regulatory protein RecX DNA repair system including RecA, MutS and a hypothetical protein;
RecA and RecX
fig|6666666.229901.peg.408 CDS AJMG02000006.1 5530 4472 -1 - 1059 RecA protein DNA repair, bacterial;
DNA repair, bacterial RecFOR pathway;
DNA repair system including RecA, MutS and a hypothetical protein;
RecA and RecX
fig|6666666.229901.peg.409 CDS AJMG02000006.1 7603 5678 -1 - 1926 Glutathione-regulated potassium-efflux system ATP-binding protein Potassium homeostasis
fig|6666666.229901.peg.410 CDS AJMG02000006.1 7684 8301 1 + 618 Multiple antibiotic resistance protein marC - none -
fig|6666666.229901.peg.411 CDS AJMG02000006.1 8407 11142 1 + 2736 Putative uncharacterized protein ydbH - none -
fig|6666666.229901.peg.412 CDS AJMG02000006.1 11139 11369 3 + 231 hypothetical protein - none -
fig|6666666.229901.peg.413 CDS AJMG02000006.1 12083 12274 2 + 192 Integrase - none -
fig|6666666.229901.peg.414 CDS AJMG02000006.1 12507 12866 3 + 360 Mobile element protein - none -
fig|6666666.229901.peg.415 CDS AJMG02000006.1 14425 14252 -1 - 174 hypothetical protein - none -
fig|6666666.229901.peg.416 CDS AJMG02000006.1 14815 15486 1 + 672 Deoxyribose-phosphate aldolase (EC 4.1.2.4) Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.229901.peg.417 CDS AJMG02000006.1 15514 16263 1 + 750 Deoxyribose operon repressor, DeoR family Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.229901.peg.418 CDS AJMG02000006.1 16401 17492 3 + 1092 Putative exported protein precursor - none -
fig|6666666.229901.peg.419 CDS AJMG02000006.1 19014 17644 -3 - 1371 N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23) / Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157) Peptidoglycan Biosynthesis;
Peptidoglycan Biosynthesis;
Sialic Acid Metabolism;
Sialic Acid Metabolism;
Transcription repair cluster;
Transcription repair cluster;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229901.peg.420 CDS AJMG02000006.1 19100 20230 2 + 1131 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) Recycling of Peptidoglycan Amino Sugars
fig|6666666.229901.peg.421 CDS AJMG02000006.1 20227 21141 1 + 915 N-acetylmuramic acid 6-phosphate etherase - none -
fig|6666666.229901.peg.422 CDS AJMG02000006.1 23083 24447 1 + 1365 lipoprotein, putative - none -
fig|6666666.229901.peg.423 CDS AJMG02000006.1 24572 25867 2 + 1296 Glycine/D-amino acid oxidases (deaminating) - none -
fig|6666666.229901.peg.424 CDS AJMG02000006.1 25993 26772 1 + 780 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain - none -
fig|6666666.229901.peg.425 CDS AJMG02000006.1 26795 27478 2 + 684 ABC-type amino acid transport system, permease component - none -
fig|6666666.229901.peg.426 CDS AJMG02000006.1 27488 28255 2 + 768 ABC-type polar amino acid transport system, ATPase component CBSS-326442.4.peg.1852
fig|6666666.229901.peg.427 CDS AJMG02000006.1 28547 28260 -2 - 288 tRNA 5-methylaminomethyl-2-thiouridine synthase TusB Sulfite reduction-associated complex DsrMKJOP and co-clustering genes;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.229901.peg.428 CDS AJMG02000006.1 28912 28550 -1 - 363 tRNA 5-methylaminomethyl-2-thiouridine synthase TusC CBSS-326442.4.peg.1852;
Sulfite reduction-associated complex DsrMKJOP and co-clustering genes;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.229901.peg.429 CDS AJMG02000006.1 29286 28909 -3 - 378 tRNA 5-methylaminomethyl-2-thiouridine synthase TusD CBSS-326442.4.peg.1852;
Sulfite reduction-associated complex DsrMKJOP and co-clustering genes;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.229901.peg.430 CDS AJMG02000006.1 29958 29290 -3 - 669 YheO-like PAS domain - none -
fig|6666666.229901.peg.431 CDS AJMG02000006.1 30763 30038 -1 - 726 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase;
Potassium homeostasis
fig|6666666.229901.peg.432 CDS AJMG02000006.1 30858 31073 3 + 216 Protein SlyX - none -
fig|6666666.229901.peg.433 CDS AJMG02000006.1 31862 31134 -2 - 729 Peroxiredoxin family protein/glutaredoxin - none -
fig|6666666.229901.peg.434 CDS AJMG02000006.1 32021 32920 2 + 900 Hydrogen peroxide-inducible genes activator LysR-family proteins in Escherichia coli;
LysR-family proteins in Salmonella enterica Typhimurium;
Oxidative stress;
Thioredoxin-disulfide reductase
fig|6666666.229901.peg.435 CDS AJMG02000006.1 32932 33552 1 + 621 Unsaturated fatty acid biosythesis repressor FabR, TetR family - none -
fig|6666666.229901.peg.436 CDS AJMG02000006.1 34809 33664 -3 - 1146 ABC transporter ATP-binding protein - none -
fig|6666666.229901.peg.437 CDS AJMG02000006.1 37021 35273 -1 - 1749 Transport ATP-binding protein CydD Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229901.peg.438 CDS AJMG02000006.1 38512 37190 -1 - 1323 Anaerobic C4-dicarboxylate membrane transporter DcuA - none -
fig|6666666.229901.peg.439 CDS AJMG02000006.1 38857 39279 1 + 423 FIG136845: Rhodanese-related sulfurtransferase Glutaredoxin 3 containing cluster
fig|6666666.229901.peg.440 CDS AJMG02000006.1 39295 39807 1 + 513 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) Glutaredoxin 3 containing cluster
fig|6666666.229901.peg.441 CDS AJMG02000006.1 39886 40899 1 + 1014 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) Glutaredoxin 3 containing cluster;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229901.peg.442 CDS AJMG02000006.1 40902 41699 3 + 798 Serine acetyltransferase (EC 2.3.1.30) Cysteine Biosynthesis;
Methionine Biosynthesis
fig|6666666.229901.peg.443 CDS AJMG02000006.1 41878 41747 -1 - 132 hypothetical protein - none -
fig|6666666.229901.peg.444 CDS AJMG02000006.1 41899 42156 1 + 258 hypothetical protein - none -
fig|6666666.229901.peg.445 CDS AJMG02000006.1 43354 42341 -1 - 1014 Fructose-1,6-bisphosphatase, GlpX type (EC 3.1.3.11) Glycolysis and Gluconeogenesis
fig|6666666.229901.peg.446 CDS AJMG02000006.1 43550 43768 2 + 219 FIG074102: hypothetical protein - none -
fig|6666666.229901.peg.447 CDS AJMG02000006.1 43825 44268 1 + 444 Flavoprotein MioC Flavodoxin
fig|6666666.229901.peg.448 CDS AJMG02000006.1 44711 46600 2 + 1890 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA Cell Division Subsystem including YidCD;
RNA modification and chromosome partitioning cluster;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229901.peg.449 CDS AJMG02000006.1 47630 46872 -2 - 759 NADPH:quinone oxidoreductase 2 NADPH:quinone oxidoreductase 2
fig|6666666.229901.peg.450 CDS AJMG02000006.1 47881 48243 1 + 363 Redox-sensing transcriptional regulator QorR NADPH:quinone oxidoreductase 2
fig|6666666.229901.peg.451 CDS AJMG02000006.1 48236 48919 2 + 684 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB Cell Division Subsystem including YidCD;
RNA methylation;
RNA modification and chromosome partitioning cluster
fig|6666666.229901.peg.452 CDS AJMG02000006.1 49031 49408 2 + 378 FIG048548: ATP synthase protein I2 - none -
fig|6666666.229901.peg.453 CDS AJMG02000006.1 49433 50221 2 + 789 ATP synthase F0 sector subunit a - none -
fig|6666666.229901.peg.454 CDS AJMG02000006.1 50275 50529 1 + 255 ATP synthase F0 sector subunit c (EC 3.6.3.14) - none -
fig|6666666.229901.peg.455 CDS AJMG02000006.1 50579 51049 2 + 471 ATP synthase F0 sector subunit b - none -
fig|6666666.229901.peg.456 CDS AJMG02000006.1 51063 51611 3 + 549 ATP synthase delta chain (EC 3.6.3.14) - none -
fig|6666666.229901.peg.457 CDS AJMG02000006.1 51624 53165 3 + 1542 ATP synthase alpha chain (EC 3.6.3.14) - none -
fig|6666666.229901.peg.458 CDS AJMG02000006.1 53181 54050 3 + 870 ATP synthase gamma chain (EC 3.6.3.14) - none -
fig|6666666.229901.peg.459 CDS AJMG02000006.1 54067 55440 1 + 1374 ATP synthase beta chain (EC 3.6.3.14) - none -
fig|6666666.229901.peg.460 CDS AJMG02000006.1 55482 55910 3 + 429 ATP synthase epsilon chain (EC 3.6.3.14) - none -
fig|6666666.229901.peg.461 CDS AJMG02000006.1 57017 55971 -2 - 1047 ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1) Polyamine Metabolism
fig|6666666.229901.peg.462 CDS AJMG02000006.1 57022 57174 1 + 153 hypothetical protein - none -
fig|6666666.229901.peg.463 CDS AJMG02000006.1 57323 59464 2 + 2142 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229901.peg.464 CDS AJMG02000006.1 59529 60311 3 + 783 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229901.peg.465 CDS AJMG02000006.1 60360 61349 3 + 990 Putative DNA-binding protein in cluster with Type I restriction-modification system Restriction-Modification System
fig|6666666.229901.peg.466 CDS AJMG02000006.1 61558 62511 1 + 954 Type I restriction-modification system, specificity subunit S (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229901.peg.467 CDS AJMG02000006.1 62492 62686 2 + 195 Type I restriction-modification system, specificity subunit S (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229901.peg.468 CDS AJMG02000006.1 62787 64391 3 + 1605 Type I restriction-modification system, DNA-methyltransferase subunit M (EC 2.1.1.72) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229901.peg.469 CDS AJMG02000006.1 65408 64572 -2 - 837 PTS system, mannose-specific IID component - none -
fig|6666666.229901.peg.470 CDS AJMG02000006.1 66227 65424 -2 - 804 PTS system, mannose-specific IIC component (EC 2.7.1.69) Mannose Metabolism;
Sialic Acid Metabolism
fig|6666666.229901.peg.471 CDS AJMG02000006.1 67237 66239 -1 - 999 PTS system, mannose-specific IIA component (EC 2.7.1.69) / PTS system, mannose-specific IIB component (EC 2.7.1.69) Mannose Metabolism;
Mannose Metabolism;
Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229901.peg.472 CDS AJMG02000006.1 67386 67502 3 + 117 hypothetical protein - none -
fig|6666666.229901.peg.473 CDS AJMG02000006.1 67523 68386 2 + 864 Permeases of the major facilitator superfamily - none -
fig|6666666.229901.peg.474 CDS AJMG02000006.1 68347 68985 1 + 639 Permeases of the major facilitator superfamily - none -
fig|6666666.229901.peg.475 CDS AJMG02000006.1 70184 69012 -2 - 1173 Xylose activator XylR (AraC family) Xylose utilization
fig|6666666.229901.peg.476 CDS AJMG02000006.1 70173 70295 3 + 123 hypothetical protein - none -
fig|6666666.229901.peg.477 CDS AJMG02000006.1 71282 70299 -2 - 984 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229901.peg.478 CDS AJMG02000006.1 71642 71313 -2 - 330 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229901.peg.479 CDS AJMG02000006.1 72891 71695 -3 - 1197 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229901.peg.480 CDS AJMG02000006.1 73968 72901 -3 - 1068 Xylose ABC transporter, permease protein XylH Xylose utilization
fig|6666666.229901.peg.481 CDS AJMG02000006.1 75483 73972 -3 - 1512 D-xylose transport ATP-binding protein XylG Xylose utilization
fig|6666666.229901.peg.482 CDS AJMG02000006.1 76541 75543 -2 - 999 Xylose ABC transporter, periplasmic xylose-binding protein XylF Xylose utilization
fig|6666666.229901.peg.483 CDS AJMG02000006.1 76799 78118 2 + 1320 Xylose isomerase (EC 5.3.1.5) Xylose utilization
fig|6666666.229901.peg.484 CDS AJMG02000006.1 78167 79639 2 + 1473 Xylulose kinase (EC 2.7.1.17) Xylose utilization
fig|6666666.229901.peg.485 CDS AJMG02000008.1 1318 1953 1 + 636 DNA transformation protein TfoX CBSS-83333.1.peg.946;
Orphan regulatory proteins
fig|6666666.229901.peg.486 CDS AJMG02000008.1 2868 2020 -3 - 849 RNA polymerase sigma factor RpoH Heat shock dnaK gene cluster extended;
Transcription initiation, bacterial sigma factors
fig|6666666.229901.peg.487 CDS AJMG02000008.1 3367 3053 -1 - 315 Uncharacterized protein conserved in bacteria - none -
fig|6666666.229901.peg.488 CDS AJMG02000008.1 4408 3383 -1 - 1026 UDP-N-acetylenolpyruvoylglucosamine reductase (EC 1.1.1.158) Peptidoglycan Biosynthesis;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229901.peg.489 CDS AJMG02000008.1 6126 4423 -3 - 1704 Nitrate/nitrite sensor protein (EC 2.7.3.-) - none -
fig|6666666.229901.peg.490 CDS AJMG02000008.1 6172 6336 1 + 165 hypothetical protein - none -
fig|6666666.229901.peg.491 CDS AJMG02000008.1 6403 6687 1 + 285 Periplasmic nitrate reductase component NapD - none -
fig|6666666.229901.peg.492 CDS AJMG02000008.1 6721 9207 1 + 2487 Periplasmic nitrate reductase precursor (EC 1.7.99.4) - none -
fig|6666666.229901.peg.493 CDS AJMG02000008.1 9234 10094 3 + 861 Ferredoxin-type protein NapG (periplasmic nitrate reductase) - none -
fig|6666666.229901.peg.494 CDS AJMG02000008.1 10094 10975 2 + 882 Polyferredoxin NapH (periplasmic nitrate reductase) - none -
fig|6666666.229901.peg.495 CDS AJMG02000008.1 11013 11462 3 + 450 Nitrate reductase cytochrome c550-type subunit - none -
fig|6666666.229901.peg.496 CDS AJMG02000008.1 11476 12111 1 + 636 Cytochrome c-type protein NapC - none -
fig|6666666.229901.peg.497 CDS AJMG02000008.1 14092 12197 -1 - 1896 Glutathionylspermidine synthase (EC 6.3.1.8) / Glutathionylspermidine amidohydrolase (EC 3.5.1.78) Glutathionylspermidine and Trypanothione;
Glutathionylspermidine and Trypanothione
fig|6666666.229901.peg.498 CDS AJMG02000008.1 15253 14210 -1 - 1044 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) LOS core oligosaccharide biosynthesis
fig|6666666.229901.peg.499 CDS AJMG02000008.1 16400 15273 -2 - 1128 Fic family protein - none -
fig|6666666.229901.peg.500 CDS AJMG02000008.1 17496 16570 -3 - 927 ADP-L-glycero-D-manno-heptose-6-epimerase (EC 5.1.3.20) LOS core oligosaccharide biosynthesis
fig|6666666.229901.peg.501 CDS AJMG02000008.1 17518 17637 1 + 120 hypothetical protein - none -
fig|6666666.229901.peg.502 CDS AJMG02000008.1 17775 18551 3 + 777 Protein HI0205 precursor - none -
fig|6666666.229901.peg.503 CDS AJMG02000008.1 18578 20392 2 + 1815 5@1-nucleotidase (EC 3.1.3.5); NAD pyrophosphatase, periplasmic (EC 3.6.1.22) Purine conversions;
pyrimidine conversions
fig|6666666.229901.peg.504 CDS AJMG02000008.1 20845 20498 -1 - 348 hypothetical protein - none -
fig|6666666.229901.peg.505 CDS AJMG02000008.1 21061 20921 -1 - 141 hypothetical protein - none -
fig|6666666.229901.peg.506 CDS AJMG02000008.1 21217 21095 -1 - 123 hypothetical protein - none -
fig|6666666.229901.peg.507 CDS AJMG02000008.1 24033 21232 -3 - 2802 DNA polymerase I (EC 2.7.7.7) DNA Repair Base Excision
fig|6666666.229901.peg.508 CDS AJMG02000008.1 24250 24813 1 + 564 Outer membrane protein 18/16 - none -
fig|6666666.229901.peg.509 CDS AJMG02000008.1 24917 25147 2 + 231 FIG00696102: hypothetical protein - none -
fig|6666666.229901.peg.510 CDS AJMG02000008.1 25157 27172 2 + 2016 ATP-dependent DNA helicase Rep DNA repair, bacterial UvrD and related helicases
fig|6666666.229901.peg.511 CDS AJMG02000008.1 28068 27688 -3 - 381 FIG00782409: hypothetical protein - none -
fig|6666666.229901.peg.512 CDS AJMG02000008.1 28197 28799 3 + 603 Putative phosphatase YqaB 2-phosphoglycolate salvage
fig|6666666.229901.peg.513 CDS AJMG02000008.1 28799 29404 2 + 606 Galactoside O-acetyltransferase (EC 2.3.1.18) Lactose utilization
fig|6666666.229901.peg.514 CDS AJMG02000008.1 29407 29892 1 + 486 Putative membrane protein - none -
fig|6666666.229901.peg.515 CDS AJMG02000008.1 30105 30611 3 + 507 S-ribosylhomocysteine lyase (EC 4.4.1.21) / Autoinducer-2 production protein LuxS Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon);
Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229901.peg.516 CDS AJMG02000008.1 30781 30933 1 + 153 hypothetical protein - none -
fig|6666666.229901.peg.517 CDS AJMG02000008.1 31589 30930 -2 - 660 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses;
Ribosome biogenesis bacterial;
tRNA modification Bacteria
fig|6666666.229901.peg.518 CDS AJMG02000008.1 31970 32659 2 + 690 Ribosyl nicotinamide transporter, PnuC-like NAD and NADP cofactor biosynthesis global
fig|6666666.229901.peg.519 CDS AJMG02000008.1 33432 32734 -3 - 699 tRNA (adenine37-N(6))-methyltransferase TrmN6 (EC 2.1.1.223) RNA methylation
fig|6666666.229901.peg.520 CDS AJMG02000008.1 33544 33416 -1 - 129 hypothetical protein - none -
fig|6666666.229901.peg.521 CDS AJMG02000008.1 33531 34862 3 + 1332 ATP-dependent RNA helicase SrmB - none -
fig|6666666.229901.peg.522 CDS AJMG02000008.1 35333 36634 2 + 1302 Predicted ATPase (AAA+ superfamily) - none -
fig|6666666.229901.peg.523 CDS AJMG02000008.1 37064 38092 2 + 1029 USG protein - none -
fig|6666666.229901.peg.524 CDS AJMG02000008.1 38605 39249 1 + 645 hypothetical protein - none -
fig|6666666.229901.peg.525 CDS AJMG02000008.1 39969 39337 -3 - 633 Pyridoxamine 5@1-phosphate oxidase (EC 1.4.3.5) Pyridoxin (Vitamin B6) Biosynthesis
fig|6666666.229901.peg.526 CDS AJMG02000008.1 40140 41465 3 + 1326 Hexose phosphate uptake regulatory protein UhpC - none -
fig|6666666.229901.peg.527 CDS AJMG02000008.1 41480 41620 2 + 141 hypothetical protein - none -
fig|6666666.229901.peg.528 CDS AJMG02000008.1 41876 41583 -2 - 294 AagD - none -
fig|6666666.229901.peg.529 CDS AJMG02000008.1 43114 41879 -1 - 1236 Biofilm PGA synthesis N-glycosyltransferase PgaC (EC 2.4.-.-) Biofilm Adhesin Biosynthesis
fig|6666666.229901.peg.530 CDS AJMG02000008.1 45039 43123 -3 - 1917 Biofilm PGA synthesis deacetylase PgaB (EC 3.-) Biofilm Adhesin Biosynthesis
fig|6666666.229901.peg.531 CDS AJMG02000008.1 47442 45055 -3 - 2388 Biofilm PGA outer membrane secretin PgaA Biofilm Adhesin Biosynthesis
fig|6666666.229901.peg.532 CDS AJMG02000008.1 47727 47584 -3 - 144 hypothetical protein - none -
fig|6666666.229901.peg.533 CDS AJMG02000008.1 48464 47745 -2 - 720 Purine nucleoside phosphorylase (EC 2.4.2.1) Adenosyl nucleosidases;
Deoxyribose and Deoxynucleoside Catabolism;
Purine conversions;
pyrimidine conversions
fig|6666666.229901.peg.534 CDS AJMG02000008.1 49840 48590 -1 - 1251 Na+ dependent nucleoside transporter NupC Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.229901.peg.535 CDS AJMG02000008.1 51307 50132 -1 - 1176 Cof protein - none -
fig|6666666.229901.peg.536 CDS AJMG02000008.1 52253 51417 -2 - 837 PTS system, mannose-specific IID component (EC 2.7.1.69) Mannose Metabolism;
Sialic Acid Metabolism
fig|6666666.229901.peg.537 CDS AJMG02000008.1 53064 52267 -3 - 798 PTS system, mannose-specific IIC component - none -
fig|6666666.229901.peg.538 CDS AJMG02000008.1 54047 53082 -2 - 966 PTS system, mannose-specific IIA component (EC 2.7.1.69) / PTS system, mannose-specific IIB component (EC 2.7.1.69) Mannose Metabolism;
Mannose Metabolism;
Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229901.peg.539 CDS AJMG02000008.1 54918 54334 -3 - 585 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) CBSS-266117.6.peg.1260;
CBSS-269801.1.peg.1715;
RNA methylation
fig|6666666.229901.peg.540 CDS AJMG02000008.1 55006 56367 1 + 1362 Signal recognition particle receptor protein FtsY (=alpha subunit) (TC 3.A.5.1.1) Bacterial Cell Division;
Bacterial signal recognition particle (SRP);
Universal GTPases
fig|6666666.229901.peg.541 CDS AJMG02000008.1 56542 57546 1 + 1005 Tryptophanyl-tRNA synthetase (EC 6.1.1.2) tRNA aminoacylation, Trp
fig|6666666.229901.peg.542 CDS AJMG02000008.1 58277 57633 -2 - 645 3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster;
riboflavin to FAD
fig|6666666.229901.peg.543 CDS AJMG02000008.1 59730 58957 -3 - 774 Zn-dependent protease with chaperone function - none -
fig|6666666.229901.peg.544 CDS AJMG02000008.1 60333 59806 -3 - 528 Inorganic pyrophosphatase (EC 3.6.1.1) Phosphate metabolism
fig|6666666.229901.peg.545 CDS AJMG02000008.1 60495 61739 3 + 1245 Tryptophan-specific transport protein - none -
fig|6666666.229901.peg.546 CDS AJMG02000008.1 62018 62152 2 + 135 hypothetical protein - none -
fig|6666666.229901.peg.547 CDS AJMG02000008.1 62222 62335 2 + 114 hypothetical protein - none -
fig|6666666.229901.peg.548 CDS AJMG02000008.1 63424 62717 -1 - 708 NMN phosphatase (EC 3.1.3.5); Class B acid phosphatase precursor (EC 3.1.3.2) NAD and NADP cofactor biosynthesis global
fig|6666666.229901.peg.549 CDS AJMG02000008.1 63639 64166 3 + 528 ATP-dependent protease HslV (EC 3.4.25.-) Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229901.peg.550 CDS AJMG02000008.1 64187 65518 2 + 1332 ATP-dependent hsl protease ATP-binding subunit HslU Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229901.peg.551 CDS AJMG02000008.1 65584 67167 1 + 1584 Nickel ABC transporter, periplasmic nickel-binding protein NikA (TC 3.A.1.5.3) Transport of Nickel and Cobalt
fig|6666666.229901.peg.552 CDS AJMG02000008.1 67233 68009 3 + 777 Nucleoside ABC transporter, periplasmic nucleoside-binding protein - none -
fig|6666666.229901.peg.553 CDS AJMG02000008.1 68027 68521 2 + 495 Protein yfbU - none -
fig|6666666.229901.peg.554 CDS AJMG02000008.1 69289 68606 -1 - 684 Phosphoglycerate mutase (EC 5.4.2.1) Glycolysis and Gluconeogenesis;
Phosphoglycerate mutase protein family
fig|6666666.229901.peg.555 CDS AJMG02000008.1 69595 71253 1 + 1659 Phosphoglucosamine mutase (EC 5.4.2.10) Sialic Acid Metabolism;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229901.peg.556 CDS AJMG02000008.1 71504 72721 2 + 1218 Periplasmic septal ring factor with murein hydrolase activity EnvC/YibP CBSS-224911.1.peg.435;
Glutaredoxins;
Phosphoglycerate mutase protein family
fig|6666666.229901.peg.557 CDS AJMG02000008.1 72718 73545 1 + 828 Putative periplasmic protein YibQ, distant homology with nucleoside diphosphatase and polysaccharide deacetylase CBSS-224911.1.peg.435;
Phosphoglycerate mutase protein family
fig|6666666.229901.peg.558 CDS AJMG02000008.1 74261 73557 -2 - 705 MG(2+) CHELATASE FAMILY PROTEIN / ComM-related protein CBSS-203122.12.peg.188;
CBSS-203122.12.peg.188
fig|6666666.229901.peg.559 CDS AJMG02000008.1 74523 74813 3 + 291 FIGfam050825 CBSS-203122.12.peg.188
fig|6666666.229901.peg.560 CDS AJMG02000008.1 74773 75741 1 + 969 TniA putative transposase CBSS-203122.12.peg.188
fig|6666666.229901.peg.561 CDS AJMG02000008.1 75741 76634 3 + 894 TniB NTP-binding protein CBSS-203122.12.peg.188
fig|6666666.229901.peg.562 CDS AJMG02000008.1 76592 77710 2 + 1119 Mll9366 protein CBSS-203122.12.peg.188
fig|6666666.229901.peg.563 CDS AJMG02000008.1 77707 79122 1 + 1416 FIGfam110555 CBSS-203122.12.peg.188
fig|6666666.229901.peg.564 CDS AJMG02000008.1 79950 81530 3 + 1581 Recombinase - none -
fig|6666666.229901.peg.565 CDS AJMG02000008.1 81763 82320 1 + 558 Chromosome (plasmid) partitioning protein ParB Bacterial Cytoskeleton;
Cell Division Subsystem including YidCD;
RNA modification and chromosome partitioning cluster
fig|6666666.229901.peg.566 CDS AJMG02000008.1 82355 83167 2 + 813 Bll0873 protein - none -
fig|6666666.229901.peg.567 CDS AJMG02000008.1 84504 83989 -3 - 516 hypothetical protein - none -
fig|6666666.229901.peg.568 CDS AJMG02000008.1 87876 84508 -3 - 3369 VgrG protein - none -
fig|6666666.229901.peg.569 CDS AJMG02000008.1 88669 87863 -1 - 807 VgrG protein - none -
fig|6666666.229901.peg.570 CDS AJMG02000008.1 88941 89600 3 + 660 Methyltransferase - none -
fig|6666666.229901.peg.571 CDS AJMG02000008.1 89616 90443 3 + 828 Thermostable 8-oxoguanine DNA glycosylase - none -
fig|6666666.229901.peg.572 CDS AJMG02000008.1 92927 91680 -2 - 1248 Ribokinase (EC 2.7.1.15) D-ribose utilization;
Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.229901.peg.573 CDS AJMG02000008.1 95263 93515 -1 - 1749 hypothetical protein - none -
fig|6666666.229901.peg.574 CDS AJMG02000008.1 96231 95365 -3 - 867 MG(2+) CHELATASE FAMILY PROTEIN CBSS-203122.12.peg.188
fig|6666666.229901.peg.575 CDS AJMG02000008.1 96960 96346 -3 - 615 GTP-binding protein EngB Universal GTPases
fig|6666666.229901.peg.576 CDS AJMG02000008.1 96970 97083 1 + 114 hypothetical protein - none -
fig|6666666.229901.peg.577 CDS AJMG02000008.1 97093 97968 1 + 876 Membrane protein LAPB - none -
fig|6666666.229901.peg.578 CDS AJMG02000008.1 98540 98064 -2 - 477 tRNA (cytidine(34)-2@1-O)-methyltransferase (EC 2.1.1.207) Biotin synthesis cluster;
RNA methylation
fig|6666666.229901.peg.579 CDS AJMG02000008.1 99156 98659 -3 - 498 Phospholipid-binding protein - none -
fig|6666666.229901.peg.580 CDS AJMG02000008.1 100104 99262 -3 - 843 Methionine ABC transporter substrate-binding protein Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229901.peg.581 CDS AJMG02000008.1 100816 100139 -1 - 678 Methionine ABC transporter permease protein Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229901.peg.582 CDS AJMG02000008.1 101843 100806 -2 - 1038 Methionine ABC transporter ATP-binding protein Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229901.peg.583 CDS AJMG02000008.1 102040 102597 1 + 558 D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase (EC 3.1.1.-) Capsular heptose biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.229901.peg.584 CDS AJMG02000009.1 492 608 3 + 117 hypothetical protein - none -
fig|6666666.229901.peg.585 CDS AJMG02000009.1 1752 1171 -3 - 582 Molybdopterin biosynthesis molybdochelatase MogA Molybdenum cofactor biosynthesis
fig|6666666.229901.peg.586 CDS AJMG02000009.1 2180 1842 -2 - 339 Phosphatidate cytidylyltransferase (EC 2.7.7.41) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229901.peg.587 CDS AJMG02000009.1 2771 2181 -2 - 591 Phosphatidate cytidylyltransferase (EC 2.7.7.41) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229901.peg.588 CDS AJMG02000009.1 3403 2771 -1 - 633 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229901.peg.589 CDS AJMG02000009.1 4022 3414 -2 - 609 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229901.peg.590 CDS AJMG02000009.1 5901 4033 -3 - 1869 Putative transport protein - none -
fig|6666666.229901.peg.591 CDS AJMG02000009.1 6540 5941 -3 - 600 Ribonuclease HII (EC 3.1.26.4) Conserved gene cluster associated with Met-tRNA formyltransferase;
Ribonuclease H
fig|6666666.229901.peg.592 CDS AJMG02000009.1 7717 6533 -1 - 1185 Lipid-A-disaccharide synthase (EC 2.4.1.182) Llipid A biosynthesis cluster
fig|6666666.229901.peg.593 CDS AJMG02000009.1 8590 7802 -1 - 789 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase (EC 2.3.1.129) Llipid A biosynthesis cluster
fig|6666666.229901.peg.594 CDS AJMG02000009.1 9021 8611 -3 - 411 3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabZ form (EC 4.2.1.59) Fatty Acid Biosynthesis FASII;
Llipid A biosynthesis cluster
fig|6666666.229901.peg.595 CDS AJMG02000009.1 10180 9158 -1 - 1023 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC 2.3.1.191) - none -
fig|6666666.229901.peg.596 CDS AJMG02000009.1 10755 10180 -3 - 576 Outer membrane chaperone Skp (OmpH) precursor @ Outer membrane protein H precursor Lipopolysaccharide assembly;
Llipid A biosynthesis cluster;
Periplasmic Stress Response
fig|6666666.229901.peg.597 CDS AJMG02000009.1 13271 10860 -2 - 2412 Outer membrane protein assembly factor YaeT precursor Lipopolysaccharide assembly;
Llipid A biosynthesis cluster
fig|6666666.229901.peg.598 CDS AJMG02000009.1 14624 13290 -2 - 1335 Membrane-associated zinc metalloprotease - none -
fig|6666666.229901.peg.599 CDS AJMG02000009.1 15502 14633 -1 - 870 Phosphatidate cytidylyltransferase (EC 2.7.7.41) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229901.peg.600 CDS AJMG02000009.1 16236 15517 -3 - 720 Undecaprenyl diphosphate synthase (EC 2.5.1.31) CBSS-83331.1.peg.3039;
Isoprenoid Biosynthesis;
Isoprenoinds for Quinones;
Polyprenyl Diphosphate Biosynthesis
fig|6666666.229901.peg.601 CDS AJMG02000009.1 17541 16258 -3 - 1284 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.267) CBSS-83331.1.peg.3039;
Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.229901.peg.602 CDS AJMG02000009.1 18127 17570 -1 - 558 Ribosome recycling factor Ribosome recycling related cluster;
Translation termination factors bacterial
fig|6666666.229901.peg.603 CDS AJMG02000009.1 18284 18141 -2 - 144 hypothetical protein - none -
fig|6666666.229901.peg.604 CDS AJMG02000009.1 19065 18352 -3 - 714 Uridine monophosphate kinase (EC 2.7.4.22) CBSS-312309.3.peg.1965;
Ribosome recycling related cluster
fig|6666666.229901.peg.605 CDS AJMG02000009.1 19123 19254 1 + 132 hypothetical protein - none -
fig|6666666.229901.peg.606 CDS AJMG02000009.1 20880 19222 -3 - 1659 Mediator of hyperadherence YidE - none -
fig|6666666.229901.peg.607 CDS AJMG02000009.1 21004 22821 1 + 1818 ABC transporter ATP-binding protein - none -
fig|6666666.229901.peg.608 CDS AJMG02000009.1 24508 23411 -1 - 1098 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229901.peg.609 CDS AJMG02000009.1 26137 24545 -1 - 1593 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229901.peg.610 CDS AJMG02000009.1 27173 26418 -2 - 756 Glycerol-3-phosphate regulon repressor GlpR - none -
fig|6666666.229901.peg.611 CDS AJMG02000009.1 28110 27235 -3 - 876 GlpG protein (membrane protein of glp regulon) - none -
fig|6666666.229901.peg.612 CDS AJMG02000009.1 28153 28467 1 + 315 Uncharacterized protein PM1437 - none -
fig|6666666.229901.peg.613 CDS AJMG02000009.1 28805 28479 -2 - 327 Thiosulfate sulfurtransferase GlpE (EC 2.8.1.1) Single-Rhodanese-domain proteins
fig|6666666.229901.peg.614 CDS AJMG02000009.1 29365 28817 -1 - 549 FIG00903983: hypothetical protein - none -
fig|6666666.229901.peg.615 CDS AJMG02000009.1 31244 29490 -2 - 1755 DNA recombination protein RmuC DNA repair, bacterial
fig|6666666.229901.peg.616 CDS AJMG02000009.1 31247 31795 2 + 549 Similar to C-terminal Zn-finger domain of DNA topoisomerase I Conserved gene cluster associated with Met-tRNA formyltransferase;
DNA topoisomerases, Type I, ATP-independent
fig|6666666.229901.peg.617 CDS AJMG02000009.1 31800 32351 3 + 552 TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA - none -
fig|6666666.229901.peg.618 CDS AJMG02000009.1 32355 33155 3 + 801 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) Chorismate Synthesis;
Cluster containing Alanyl-tRNA synthetase;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229901.peg.619 CDS AJMG02000009.1 34031 33150 -2 - 882 Protein rarD - none -
fig|6666666.229901.peg.620 CDS AJMG02000009.1 34249 34064 -1 - 186 HTH-type transcriptional regulator IlvY Alanine biosynthesis;
LysR-family proteins in Escherichia coli;
LysR-family proteins in Salmonella enterica Typhimurium
fig|6666666.229901.peg.621 CDS AJMG02000009.1 34890 35189 3 + 300 Ketol-acid reductoisomerase (EC 1.1.1.86) Coenzyme A Biosynthesis
fig|6666666.229901.peg.622 CDS AJMG02000009.1 35359 35475 1 + 117 SSU ribosomal protein S12p (S23e) Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Ribosomal protein S12p Asp methylthiotransferase;
Ribosome SSU bacterial
fig|6666666.229901.peg.623 CDS AJMG02000009.1 35654 35791 2 + 138 SSU ribosomal protein S12p (S23e) Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Ribosomal protein S12p Asp methylthiotransferase;
Ribosome SSU bacterial
fig|6666666.229901.peg.624 CDS AJMG02000009.1 35944 36414 1 + 471 SSU ribosomal protein S7p (S5e) Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Ribosome SSU bacterial
fig|6666666.229901.peg.625 CDS AJMG02000009.1 36529 38631 1 + 2103 Translation elongation factor G Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Translation elongation factor G family;
Translation elongation factors bacterial;
Universal GTPases
fig|6666666.229901.peg.626 CDS AJMG02000010.1 626 237 -2 - 390 LSU ribosomal protein L17p Ribosome LSU bacterial
fig|6666666.229901.peg.627 CDS AJMG02000010.1 1657 668 -1 - 990 DNA-directed RNA polymerase alpha subunit (EC 2.7.7.6) RNA polymerase bacterial
fig|6666666.229901.peg.628 CDS AJMG02000010.1 2294 1686 -2 - 609 SSU ribosomal protein S4p (S9e) Ribosome SSU bacterial
fig|6666666.229901.peg.629 CDS AJMG02000010.1 2725 2336 -1 - 390 SSU ribosomal protein S11p (S14e) Ribosome SSU bacterial
fig|6666666.229901.peg.630 CDS AJMG02000010.1 3097 2741 -1 - 357 SSU ribosomal protein S13p (S18e) Ribosome SSU bacterial
fig|6666666.229901.peg.631 CDS AJMG02000010.1 3352 3239 -1 - 114 LSU ribosomal protein L36p Ribosome LSU bacterial
fig|6666666.229901.peg.632 CDS AJMG02000010.1 4703 3378 -2 - 1326 Preprotein translocase secY subunit (TC 3.A.5.1.1) - none -
fig|6666666.229901.peg.633 CDS AJMG02000010.1 5141 4707 -2 - 435 LSU ribosomal protein L15p (L27Ae) Ribosome LSU bacterial
fig|6666666.229901.peg.634 CDS AJMG02000010.1 5831 5331 -2 - 501 SSU ribosomal protein S5p (S2e) Ribosome SSU bacterial
fig|6666666.229901.peg.635 CDS AJMG02000010.1 6200 5847 -2 - 354 LSU ribosomal protein L18p (L5e) Ribosome LSU bacterial
fig|6666666.229901.peg.636 CDS AJMG02000010.1 6747 6214 -3 - 534 LSU ribosomal protein L6p (L9e) Ribosome LSU bacterial
fig|6666666.229901.peg.637 CDS AJMG02000010.1 7155 6763 -3 - 393 SSU ribosomal protein S8p (S15Ae) Ribosome SSU bacterial
fig|6666666.229901.peg.638 CDS AJMG02000010.1 7497 7192 -3 - 306 SSU ribosomal protein S14p (S29e) @ SSU ribosomal protein S14p (S29e), zinc-independent Ribosome SSU bacterial;
Ribosome SSU bacterial
fig|6666666.229901.peg.639 CDS AJMG02000010.1 7938 7510 -3 - 429 LSU ribosomal protein L5p (L11e) Ribosome LSU bacterial
fig|6666666.229901.peg.640 CDS AJMG02000010.1 8378 8067 -2 - 312 LSU ribosomal protein L24p (L26e) Ribosome LSU bacterial
fig|6666666.229901.peg.641 CDS AJMG02000010.1 8760 8389 -3 - 372 LSU ribosomal protein L14p (L23e) Ribosome LSU bacterial
fig|6666666.229901.peg.642 CDS AJMG02000011.1 863 690 -2 - 174 hypothetical protein - none -
fig|6666666.229901.peg.643 CDS AJMG02000012.1 2438 1920 -2 - 519 Cytochrome c-type biogenesis protein CcmE, heme chaperone Biogenesis of c-type cytochromes
fig|6666666.229901.peg.644 CDS AJMG02000012.1 2641 2435 -1 - 207 Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE Biogenesis of c-type cytochromes
fig|6666666.229901.peg.645 CDS AJMG02000012.1 3396 2659 -3 - 738 Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE Biogenesis of c-type cytochromes
fig|6666666.229901.peg.646 CDS AJMG02000012.1 4072 3407 -1 - 666 ABC transporter involved in cytochrome c biogenesis, CcmB subunit Biogenesis of c-type cytochromes
fig|6666666.229901.peg.647 CDS AJMG02000012.1 4712 4077 -2 - 636 ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA Biogenesis of c-type cytochromes
fig|6666666.229901.peg.648 CDS AJMG02000012.1 5669 4884 -2 - 786 Bicyclomycin resistance protein - none -
fig|6666666.229901.peg.649 CDS AJMG02000012.1 6076 5666 -1 - 411 Bicyclomycin resistance protein - none -
fig|6666666.229901.peg.650 CDS AJMG02000012.1 6782 6081 -2 - 702 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses
fig|6666666.229901.peg.651 CDS AJMG02000012.1 6824 7006 2 + 183 hypothetical protein - none -
fig|6666666.229901.peg.652 CDS AJMG02000012.1 6999 9263 3 + 2265 NADP-dependent malic enzyme (EC 1.1.1.40) Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229901.peg.653 CDS AJMG02000012.1 9408 10052 3 + 645 Manganese superoxide dismutase (EC 1.15.1.1) Oxidative stress;
Protection from Reactive Oxygen Species
fig|6666666.229901.peg.654 CDS AJMG02000012.1 10463 11254 2 + 792 putative lipoprotein - none -
fig|6666666.229901.peg.655 CDS AJMG02000012.1 12283 11456 -1 - 828 YpfJ protein, zinc metalloprotease superfamily Broadly distributed proteins not in subsystems
fig|6666666.229901.peg.656 CDS AJMG02000012.1 12423 12866 3 + 444 FIG00904084: hypothetical protein - none -
fig|6666666.229901.peg.657 CDS AJMG02000012.1 13552 12956 -1 - 597 Acyl-phosphate:glycerol-3-phosphate O-acyltransferase PlsY Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229901.peg.658 CDS AJMG02000012.1 13649 14002 2 + 354 Dihydroneopterin aldolase (EC 4.1.2.25) Folate Biosynthesis;
Folate biosynthesis cluster
fig|6666666.229901.peg.659 CDS AJMG02000012.1 14023 15453 1 + 1431 Transglycosylase, Slt family - none -
fig|6666666.229901.peg.660 CDS AJMG02000012.1 15464 15610 2 + 147 hypothetical protein - none -
fig|6666666.229901.peg.661 CDS AJMG02000012.1 16192 15653 -1 - 540 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation Biogenesis of c-type cytochromes;
Periplasmic disulfide interchange
fig|6666666.229901.peg.662 CDS AJMG02000012.1 17760 16216 -3 - 1545 Na+/H+ antiporter NhaB - none -
fig|6666666.229901.peg.663 CDS AJMG02000012.1 17955 18686 3 + 732 Transcriptional regulator for fatty acid degradation FadR, GntR family - none -
fig|6666666.229901.peg.664 CDS AJMG02000012.1 20021 18807 -2 - 1215 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229901.peg.665 CDS AJMG02000012.1 20138 21442 2 + 1305 Menaquinone-specific isochorismate synthase (EC 5.4.4.2) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229901.peg.666 CDS AJMG02000012.1 21433 23139 1 + 1707 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase (EC 2.2.1.9) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229901.peg.667 CDS AJMG02000012.1 23192 23941 2 + 750 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase (EC 4.2.99.20) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229901.peg.668 CDS AJMG02000012.1 24037 24306 1 + 270 SSU ribosomal protein S15p (S13e) Ribosome SSU bacterial
fig|6666666.229901.peg.669 CDS AJMG02000012.1 24514 25668 1 + 1155 S-adenosylmethionine synthetase (EC 2.5.1.6) Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229901.peg.670 CDS AJMG02000012.1 25737 26237 3 + 501 Protein sprT - none -
fig|6666666.229901.peg.671 CDS AJMG02000012.1 26394 27635 3 + 1242 Serine transporter Glycine and Serine Utilization;
Pyruvate Alanine Serine Interconversions
fig|6666666.229901.peg.672 CDS AJMG02000012.1 27728 29092 2 + 1365 L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17) Glycine and Serine Utilization;
Glycine and Serine Utilization;
Pyruvate Alanine Serine Interconversions;
Pyruvate Alanine Serine Interconversions
fig|6666666.229901.peg.673 CDS AJMG02000012.1 30322 29273 -1 - 1050 L-asparaginase (EC 3.5.1.1) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229901.peg.674 CDS AJMG02000012.1 30617 31756 2 + 1140 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) CBSS-498211.3.peg.1415;
Conserved gene cluster associated with Met-tRNA formyltransferase;
RNA methylation
fig|6666666.229901.peg.675 CDS AJMG02000012.1 31778 32329 2 + 552 Type IV pilus biogenesis protein PilF CBSS-498211.3.peg.1415
fig|6666666.229901.peg.676 CDS AJMG02000012.1 32473 33528 1 + 1056 FIG021952: putative membrane protein CBSS-498211.3.peg.1415
fig|6666666.229901.peg.677 CDS AJMG02000012.1 33540 34643 3 + 1104 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (EC 1.17.7.1) CBSS-498211.3.peg.1415;
CBSS-83331.1.peg.3039;
Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.229901.peg.678 CDS AJMG02000012.1 34665 35942 3 + 1278 Histidyl-tRNA synthetase (EC 6.1.1.21) CBSS-498211.3.peg.1415;
tRNA aminoacylation, His
fig|6666666.229901.peg.679 CDS AJMG02000012.1 35953 36567 1 + 615 Mlr7403 protein CBSS-290633.1.peg.1906;
CBSS-498211.3.peg.1415
fig|6666666.229901.peg.680 CDS AJMG02000012.1 36620 37072 2 + 453 Putative protein-S-isoprenylcysteine methyltransferase - none -
fig|6666666.229901.peg.681 CDS AJMG02000012.1 37782 37078 -3 - 705 Chromosomal replication initiator protein DnaA Cell Division Subsystem including YidCD;
DNA replication cluster 1
fig|6666666.229901.peg.682 CDS AJMG02000012.1 37768 37905 1 + 138 hypothetical protein - none -
fig|6666666.229901.peg.683 CDS AJMG02000012.1 39155 37902 -2 - 1254 Uracil permease De Novo Pyrimidine Synthesis
fig|6666666.229901.peg.684 CDS AJMG02000012.1 39905 39279 -2 - 627 Uracil phosphoribosyltransferase (EC 2.4.2.9) De Novo Pyrimidine Synthesis;
pyrimidine conversions
fig|6666666.229901.peg.685 CDS AJMG02000012.1 41887 40040 -1 - 1848 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase
fig|6666666.229901.peg.686 CDS AJMG02000012.1 44293 42020 -1 - 2274 Glutathione biosynthesis bifunctional protein gshF (EC 6.3.2.2)(EC 6.3.2.3) Glutathione: Biosynthesis and gamma-glutamyl cycle
fig|6666666.229901.peg.687 CDS AJMG02000012.1 44421 44290 -3 - 132 hypothetical protein - none -
fig|6666666.229901.peg.688 CDS AJMG02000012.1 44525 46126 2 + 1602 Dca - none -
fig|6666666.229901.peg.689 CDS AJMG02000012.1 46383 46949 3 + 567 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent;
cAMP signaling in bacteria
fig|6666666.229901.peg.690 CDS AJMG02000012.1 46959 48200 3 + 1242 ATP-dependent Clp protease ATP-binding subunit ClpX Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229901.peg.691 CDS AJMG02000012.1 48586 48263 -1 - 324 FIG074102: hypothetical protein - none -
fig|6666666.229901.peg.692 CDS AJMG02000012.1 48743 48579 -2 - 165 Phage-related protein - none -
fig|6666666.229901.peg.693 CDS AJMG02000012.1 49891 49046 -1 - 846 membrane protein, putative - none -
fig|6666666.229901.peg.694 CDS AJMG02000012.1 52123 49964 -1 - 2160 Copper-translocating P-type ATPase (EC 3.6.3.4) Copper Transport System;
Copper homeostasis
fig|6666666.229901.peg.695 CDS AJMG02000012.1 52422 52210 -3 - 213 Copper chaperone Copper homeostasis
fig|6666666.229901.peg.696 CDS AJMG02000012.1 52517 52903 2 + 387 Cu(I)-responsive transcriptional regulator Copper homeostasis
fig|6666666.229901.peg.697 CDS AJMG02000012.1 53174 54256 2 + 1083 Type I restriction-modification system, DNA-methyltransferase subunit M (EC 2.1.1.72) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229901.peg.698 CDS AJMG02000012.1 54270 54491 3 + 222 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229901.peg.699 CDS AJMG02000012.1 55655 54819 -2 - 837 COG1720: Uncharacterized conserved protein tRNA modification Bacteria
fig|6666666.229901.peg.700 CDS AJMG02000012.1 55768 56688 1 + 921 1,4-dihydroxy-2-naphthoate polyprenyltransferase (EC 2.5.1.74) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229901.peg.701 CDS AJMG02000012.1 56739 57239 3 + 501 Ribonuclease E inhibitor RraA RNA processing and degradation, bacterial
fig|6666666.229901.peg.702 CDS AJMG02000012.1 57260 57424 2 + 165 hypothetical protein - none -
fig|6666666.229901.peg.703 CDS AJMG02000012.1 57429 58394 3 + 966 Arsenic efflux pump protein Arsenic resistance
fig|6666666.229901.peg.704 CDS AJMG02000012.1 58901 58368 -2 - 534 FIG138315: Putative alpha helix protein Putative TldE-TldD proteolytic complex
fig|6666666.229901.peg.705 CDS AJMG02000012.1 59022 60383 3 + 1362 TldE protein, part of TldE/TldD proteolytic complex Putative TldE-TldD proteolytic complex
fig|6666666.229901.peg.706 CDS AJMG02000012.1 60622 61161 1 + 540 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) Cell division-ribosomal stress proteins cluster;
Folate biosynthesis cluster;
Purine conversions
fig|6666666.229901.peg.707 CDS AJMG02000012.1 62370 61231 -3 - 1140 Glycerate kinase (EC 2.7.1.31) D-galactarate, D-glucarate and D-glycerate catabolism;
D-galactarate, D-glucarate and D-glycerate catabolism - gjo;
Glycerate metabolism;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Glycine and Serine Utilization
fig|6666666.229901.peg.708 CDS AJMG02000012.1 63641 62367 -2 - 1275 D-glycerate transporter (predicted) D-galactarate, D-glucarate and D-glycerate catabolism;
D-galactarate, D-glucarate and D-glycerate catabolism - gjo;
Glycerate metabolism
fig|6666666.229901.peg.709 CDS AJMG02000012.1 64876 63773 -1 - 1104 Sugar diacid utilization regulator SdaR D-galactarate, D-glucarate and D-glycerate catabolism;
D-galactarate, D-glucarate and D-glycerate catabolism - gjo
fig|6666666.229901.peg.710 CDS AJMG02000012.1 65097 65792 3 + 696 UDP-glucose dehydrogenase (EC 1.1.1.22) - none -
fig|6666666.229901.peg.711 CDS AJMG02000012.1 67663 65876 -1 - 1788 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) - none -
fig|6666666.229901.peg.712 CDS AJMG02000012.1 68692 67790 -1 - 903 Lipoprotein nlpI precursor - none -
fig|6666666.229901.peg.713 CDS AJMG02000012.1 71008 68777 -1 - 2232 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) Bacterial RNA-metabolizing Zn-dependent hydrolases;
Polyadenylation bacterial
fig|6666666.229901.peg.714 CDS AJMG02000012.1 71200 71670 1 + 471 Putative sugar isomerase involved in processing of exogenous sialic acid Sialic Acid Metabolism
fig|6666666.229901.peg.715 CDS AJMG02000012.1 72797 72144 -2 - 654 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD Recycling of Peptidoglycan Amino Acids
fig|6666666.229901.peg.716 CDS AJMG02000012.1 72820 73272 1 + 453 Type IV pilin PilA Type IV pilus
fig|6666666.229901.peg.717 CDS AJMG02000012.1 73299 74708 3 + 1410 Type IV fimbrial assembly, ATPase PilB Type IV pilus
fig|6666666.229901.peg.718 CDS AJMG02000012.1 74701 75924 1 + 1224 Type II secretory pathway, component PulF / Type IV fimbrial assembly protein PilC Type IV pilus
fig|6666666.229901.peg.719 CDS AJMG02000012.1 75924 76610 3 + 687 Leader peptidase (Prepilin peptidase) (EC 3.4.23.43) / N-methyltransferase (EC 2.1.1.-) Type IV pilus;
Type IV pilus
fig|6666666.229901.peg.720 CDS AJMG02000012.1 76660 77283 1 + 624 Dephospho-CoA kinase (EC 2.7.1.24) Coenzyme A Biosynthesis
fig|6666666.229901.peg.721 CDS AJMG02000012.1 77273 77485 2 + 213 FIG003276: zinc-binding protein - none -
fig|6666666.229901.peg.722 CDS AJMG02000012.1 77485 77757 1 + 273 FIG00904058: hypothetical protein - none -
fig|6666666.229901.peg.723 CDS AJMG02000012.1 78154 79527 1 + 1374 Sodium/glycine symporter GlyP - none -
fig|6666666.229901.peg.724 CDS AJMG02000012.1 79756 80079 1 + 324 Ribosome hibernation protein YfiA Ribosome activity modulation
fig|6666666.229901.peg.725 CDS AJMG02000012.1 80534 80782 2 + 249 unknown - none -
fig|6666666.229901.peg.726 CDS AJMG02000012.1 81697 81398 -1 - 300 DNA-binding protein Fis DNA structural proteins, bacterial
fig|6666666.229901.peg.727 CDS AJMG02000012.1 82740 81691 -3 - 1050 tRNA dihydrouridine synthase B (EC 1.-.-.-) tRNA modification Bacteria
fig|6666666.229901.peg.728 CDS AJMG02000012.1 83869 82985 -1 - 885 Ribosomal protein L11 methyltransferase (EC 2.1.1.-) Heat shock dnaK gene cluster extended;
Ribosome biogenesis bacterial
fig|6666666.229901.peg.729 CDS AJMG02000012.1 84424 83882 -1 - 543 Protein involved in cell division - none -
fig|6666666.229901.peg.730 CDS AJMG02000012.1 85879 84443 -1 - 1437 Pantothenate:Na+ symporter (TC 2.A.21.1.1) CBSS-221988.1.peg.1679;
Coenzyme A Biosynthesis
fig|6666666.229901.peg.731 CDS AJMG02000012.1 86148 85876 -3 - 273 FIG003021: Membrane protein CBSS-221988.1.peg.1679
fig|6666666.229901.peg.732 CDS AJMG02000012.1 87560 86172 -2 - 1389 FOG: TPR repeat - none -
fig|6666666.229901.peg.733 CDS AJMG02000012.1 88443 87679 -3 - 765 Periplasmic protein TonB, links inner and outer membranes - none -
fig|6666666.229901.peg.734 CDS AJMG02000012.1 88632 88498 -3 - 135 hypothetical protein - none -
fig|6666666.229901.peg.735 CDS AJMG02000012.1 90086 88740 -2 - 1347 Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14) CBSS-221988.1.peg.1679;
Fatty Acid Biosynthesis FASII
fig|6666666.229901.peg.736 CDS AJMG02000012.1 90596 90129 -2 - 468 Biotin carboxyl carrier protein of acetyl-CoA carboxylase CBSS-221988.1.peg.1679;
Fatty Acid Biosynthesis FASII
fig|6666666.229901.peg.737 CDS AJMG02000012.1 90613 90765 1 + 153 hypothetical protein - none -
fig|6666666.229901.peg.738 CDS AJMG02000012.1 91196 90720 -2 - 477 3-dehydroquinate dehydratase II (EC 4.2.1.10) CBSS-221988.1.peg.1679;
Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate);
Quinate degradation
fig|6666666.229901.peg.739 CDS AJMG02000012.1 92296 91295 -1 - 1002 O-succinylbenzoate synthase (EC 4.2.1.113) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo;
Muconate lactonizing enzyme family
fig|6666666.229901.peg.740 CDS AJMG02000012.1 92606 92277 -2 - 330 Nucleotidyltransferase (EC 2.7.7.-) - none -
fig|6666666.229901.peg.741 CDS AJMG02000012.1 93007 92588 -1 - 420 Nucleotidyltransferase substrate binding protein, HI0074 - none -
fig|6666666.229901.peg.742 CDS AJMG02000012.1 93904 93047 -1 - 858 Naphthoate synthase (EC 4.1.3.36) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229901.peg.743 CDS AJMG02000012.1 94783 94016 -1 - 768 Triosephosphate isomerase (EC 5.3.1.1) CBSS-331978.3.peg.2915;
Glycolysis and Gluconeogenesis
fig|6666666.229901.peg.744 CDS AJMG02000012.1 94956 95399 3 + 444 Histone acetyltransferase HPA2 and related acetyltransferases CBSS-216591.1.peg.168
fig|6666666.229901.peg.745 CDS AJMG02000012.1 96840 95473 -3 - 1368 Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22) Heme and Siroheme Biosynthesis
fig|6666666.229901.peg.746 CDS AJMG02000012.1 97293 96859 -3 - 435 Periplasmic/membrane protein associated with DUF414 - none -
fig|6666666.229901.peg.747 CDS AJMG02000012.1 97866 97306 -3 - 561 Protein of unknown function DUF414 - none -
fig|6666666.229901.peg.748 CDS AJMG02000012.1 98494 97967 -1 - 528 tRNA-specific adenosine-34 deaminase (EC 3.5.4.-) tRNA modification Bacteria;
tRNA processing;
tRNAmodification position 34
fig|6666666.229901.peg.749 CDS AJMG02000012.1 99671 98820 -2 - 852 Thymidylate synthase (EC 2.1.1.45) Folate Biosynthesis;
pyrimidine conversions
fig|6666666.229901.peg.750 CDS AJMG02000012.1 100465 99668 -1 - 798 Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-) Lipoprotein Biosynthesis
fig|6666666.229901.peg.751 CDS AJMG02000012.1 101271 100474 -3 - 798 Protein of unknown function DUF81 - none -
fig|6666666.229901.peg.752 CDS AJMG02000012.1 101873 101274 -2 - 600 Adenosine (5@1)-pentaphospho-(5@1@1)-adenosine pyrophosphohydrolase (EC 3.6.1.-) CBSS-224911.1.peg.435;
CBSS-364106.7.peg.3204;
Nudix proteins (nucleoside triphosphate hydrolases);
Phosphoglycerate mutase protein family
fig|6666666.229901.peg.753 CDS AJMG02000012.1 102093 102512 3 + 420 Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229901.peg.754 CDS AJMG02000012.1 102523 104031 1 + 1509 Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229901.peg.755 CDS AJMG02000012.1 104028 104924 3 + 897 Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229901.peg.756 CDS AJMG02000012.1 105014 105895 2 + 882 Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229901.peg.757 CDS AJMG02000012.1 105978 106910 3 + 933 Ribokinase (EC 2.7.1.15) D-ribose utilization;
Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.229901.peg.758 CDS AJMG02000012.1 107217 107008 -3 - 210 Cold shock protein CspG Cold shock, CspA family of proteins
fig|6666666.229901.peg.759 CDS AJMG02000012.1 108521 107772 -2 - 750 Phage tail fibers Phage tail fiber proteins
fig|6666666.229901.peg.760 CDS AJMG02000012.1 109150 108521 -1 - 630 Arginyl-tRNA synthetase (EC 6.1.1.19) tRNA aminoacylation, Arg
fig|6666666.229901.peg.761 CDS AJMG02000012.1 109257 109433 3 + 177 hypothetical protein; Hypothetical gene - none -
fig|6666666.229901.peg.762 CDS AJMG02000012.1 109478 109891 2 + 414 hypothetical protein - none -
fig|6666666.229901.peg.763 CDS AJMG02000012.1 110458 109922 -1 - 537 FIG00643583: hypothetical protein - none -
fig|6666666.229901.peg.764 CDS AJMG02000012.1 110609 110409 -2 - 201 FIG01218156: hypothetical protein - none -
fig|6666666.229901.peg.765 CDS AJMG02000012.1 110737 111771 1 + 1035 Phage integrase - none -
fig|6666666.229901.peg.766 CDS AJMG02000012.1 113394 111949 -3 - 1446 Glutamyl-tRNA synthetase (EC 6.1.1.17) Heme and Siroheme Biosynthesis;
tRNA aminoacylation, Glu and Gln
fig|6666666.229901.peg.767 CDS AJMG02000012.1 114082 114870 1 + 789 Mannosyltransferase OCH1 and related enzymes - none -
fig|6666666.229901.peg.768 CDS AJMG02000012.1 114983 116359 2 + 1377 Argininosuccinate lyase (EC 4.3.2.1) - none -
fig|6666666.229901.peg.769 CDS AJMG02000012.1 116661 118010 3 + 1350 NADP-specific glutamate dehydrogenase (EC 1.4.1.4) Arginine and Ornithine Degradation;
Glutamate dehydrogenases;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Proline Synthesis
fig|6666666.229901.peg.770 CDS AJMG02000012.1 118499 119953 2 + 1455 Catalase (EC 1.11.1.6) Oxidative stress;
Protection from Reactive Oxygen Species
fig|6666666.229901.peg.771 CDS AJMG02000012.1 120784 120626 -1 - 159 hypothetical protein - none -
fig|6666666.229901.peg.772 CDS AJMG02000012.1 124558 121082 -1 - 3477 DNA polymerase III alpha subunit (EC 2.7.7.7) - none -
fig|6666666.229901.peg.773 CDS AJMG02000012.1 124523 124702 2 + 180 hypothetical protein - none -
fig|6666666.229901.peg.774 CDS AJMG02000012.1 124757 126544 2 + 1788 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) Biotin biosynthesis;
Biotin synthesis cluster
fig|6666666.229901.peg.775 CDS AJMG02000012.1 126561 126677 3 + 117 hypothetical protein - none -
fig|6666666.229901.peg.776 CDS AJMG02000012.1 127427 132790 2 + 5364 Autotransporter adhesin - none -
fig|6666666.229901.peg.777 CDS AJMG02000012.1 133044 135170 3 + 2127 Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) Ribonucleotide reduction
fig|6666666.229901.peg.778 CDS AJMG02000012.1 135351 135470 3 + 120 hypothetical protein - none -
fig|6666666.229901.peg.779 CDS AJMG02000012.1 135738 135613 -3 - 126 hypothetical protein - none -
fig|6666666.229901.peg.780 CDS AJMG02000012.1 135772 136239 1 + 468 Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) Ribonucleotide reduction
fig|6666666.229901.peg.781 CDS AJMG02000012.1 137054 136266 -2 - 789 Putative deoxyribonuclease YjjV Deoxyribose and Deoxynucleoside Catabolism;
YcfH
fig|6666666.229901.peg.782 CDS AJMG02000012.1 137338 137057 -1 - 282 hypothetical protein - none -
fig|6666666.229901.peg.783 CDS AJMG02000012.1 137486 137331 -2 - 156 hypothetical protein - none -
fig|6666666.229901.peg.784 CDS AJMG02000012.1 138092 137580 -2 - 513 Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase;
Queuosine-Archaeosine Biosynthesis
fig|6666666.229901.peg.785 CDS AJMG02000012.1 138162 139571 3 + 1410 Cysteinyl-tRNA synthetase (EC 6.1.1.16) tRNA aminoacylation, Cys
fig|6666666.229901.peg.786 CDS AJMG02000012.1 140681 139719 -2 - 963 Lipoate synthase Lipoic acid metabolism;
Lipoic acid synthesis cluster
fig|6666666.229901.peg.787 CDS AJMG02000012.1 141384 140746 -3 - 639 Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase Lipoic acid metabolism;
Lipoic acid synthesis cluster
fig|6666666.229901.peg.788 CDS AJMG02000012.1 141729 141430 -3 - 300 Proposed lipoate regulatory protein YbeD Lipoic acid metabolism;
Lipoic acid synthesis cluster
fig|6666666.229901.peg.789 CDS AJMG02000012.1 142992 141802 -3 - 1191 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) Metallocarboxypeptidases (EC 3.4.17.-);
Murein Hydrolases;
Peptidoglycan Biosynthesis
fig|6666666.229901.peg.790 CDS AJMG02000012.1 143880 143023 -3 - 858 Rare lipoprotein A precursor Peptidoglycan Biosynthesis
fig|6666666.229901.peg.791 CDS AJMG02000012.1 145044 143929 -3 - 1116 Rod shape-determining protein RodA Bacterial Cytoskeleton;
Peptidoglycan Biosynthesis
fig|6666666.229901.peg.792 CDS AJMG02000012.1 146998 145037 -1 - 1962 Penicillin-binding protein 2 (PBP-2) 16S rRNA modification within P site of ribosome;
CBSS-83331.1.peg.3039;
Peptidoglycan Biosynthesis
fig|6666666.229901.peg.793 CDS AJMG02000012.1 147547 147011 -1 - 537 LSU m3Psi1915 methyltransferase RlmH RNA methylation;
Ribosome biogenesis bacterial;
tRNA modification Bacteria
fig|6666666.229901.peg.794 CDS AJMG02000012.1 147846 147538 -3 - 309 Iojap protein - none -
fig|6666666.229901.peg.795 CDS AJMG02000012.1 149169 147913 -3 - 1257 ATP-dependent RNA helicase RhlB - none -
fig|6666666.229901.peg.796 CDS AJMG02000012.1 149494 150732 1 + 1239 Transcription termination factor Rho Transcription factors bacterial
fig|6666666.229901.peg.797 CDS AJMG02000012.1 152092 150857 -1 - 1236 Major facilitator superfamily (MFS) transport protein - none -
fig|6666666.229901.peg.798 CDS AJMG02000012.1 152179 152292 1 + 114 hypothetical protein - none -
fig|6666666.229901.peg.799 CDS AJMG02000012.1 152557 152327 -1 - 231 Acyl carrier protein Fatty Acid Biosynthesis FASII;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229901.peg.800 CDS AJMG02000012.1 153559 152831 -1 - 729 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) Fatty Acid Biosynthesis FASII
fig|6666666.229901.peg.801 CDS AJMG02000012.1 154522 153584 -1 - 939 Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39) Fatty Acid Biosynthesis FASII
fig|6666666.229901.peg.802 CDS AJMG02000012.1 155579 154629 -2 - 951 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) Fatty Acid Biosynthesis FASII
fig|6666666.229901.peg.803 CDS AJMG02000012.1 156645 155626 -3 - 1020 Phosphate:acyl-ACP acyltransferase PlsX Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229901.peg.804 CDS AJMG02000012.1 156842 156672 -2 - 171 LSU ribosomal protein L32p Ribosome LSU bacterial
fig|6666666.229901.peg.805 CDS AJMG02000012.1 157383 156859 -3 - 525 COG1399 protein, clustered with ribosomal protein L32p - none -
fig|6666666.229901.peg.806 CDS AJMG02000012.1 157982 157455 -2 - 528 Dethiobiotin synthetase (EC 6.3.3.3) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229901.peg.807 CDS AJMG02000012.1 158831 158091 -2 - 741 Biotin synthesis protein BioC Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229901.peg.808 CDS AJMG02000012.1 159499 158849 -1 - 651 Biotin synthesis protein BioG Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229901.peg.809 CDS AJMG02000012.1 160655 159480 -2 - 1176 8-amino-7-oxononanoate synthase (EC 2.3.1.47) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229901.peg.810 CDS AJMG02000012.1 161778 160648 -3 - 1131 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229901.peg.811 CDS AJMG02000012.1 161936 161742 -2 - 195 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229901.peg.812 CDS AJMG02000012.1 162159 163028 3 + 870 Phosphatidylserine decarboxylase (EC 4.1.1.65) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229901.peg.813 CDS AJMG02000012.1 163054 163686 1 + 633 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase
fig|6666666.229901.peg.814 CDS AJMG02000012.1 163992 163750 -3 - 243 Glutamate 5-kinase (EC 2.7.2.11) Proline Synthesis
fig|6666666.229901.peg.815 CDS AJMG02000012.1 164486 163986 -2 - 501 Glutamate 5-kinase (EC 2.7.2.11) Proline Synthesis
fig|6666666.229901.peg.816 CDS AJMG02000012.1 164664 164488 -3 - 177 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA Proline Synthesis;
Proline Synthesis
fig|6666666.229901.peg.817 CDS AJMG02000012.1 164722 165507 1 + 786 FIG023911: putative membrane protein CBSS-316275.9.peg.382
fig|6666666.229901.peg.818 CDS AJMG02000012.1 165509 165973 2 + 465 FIG001826: putative inner membrane protein CBSS-316275.9.peg.382
fig|6666666.229901.peg.819 CDS AJMG02000012.1 166013 166498 2 + 486 Dihydrofolate reductase (EC 1.5.1.3) 5-FCL-like protein;
Folate Biosynthesis
fig|6666666.229901.peg.820 CDS AJMG02000012.1 167928 166618 -3 - 1311 Magnesium and cobalt efflux protein CorC CBSS-56780.10.peg.1536;
Copper homeostasis: copper tolerance;
Glycyl-tRNA synthetase containing cluster;
Magnesium transport;
tRNA-methylthiotransferase containing cluster
fig|6666666.229901.peg.821 CDS AJMG02000012.1 167882 168022 2 + 141 hypothetical protein - none -
fig|6666666.229901.peg.822 CDS AJMG02000012.1 168543 168019 -3 - 525 FIG00696143: hypothetical protein - none -
fig|6666666.229901.peg.823 CDS AJMG02000012.1 169357 168575 -1 - 783 Putative deoxyribonuclease YcfH YcfH
fig|6666666.229901.peg.824 CDS AJMG02000012.1 170344 169361 -1 - 984 DNA polymerase III delta prime subunit (EC 2.7.7.7) - none -
fig|6666666.229901.peg.825 CDS AJMG02000012.1 170973 170341 -3 - 633 Thymidylate kinase (EC 2.7.4.9) pyrimidine conversions
fig|6666666.229901.peg.826 CDS AJMG02000012.1 172018 170975 -1 - 1044 FIG004453: protein YceG like CBSS-323097.3.peg.2594;
Cluster containing Alanyl-tRNA synthetase;
tRNA modification Bacteria
fig|6666666.229901.peg.827 CDS AJMG02000012.1 172495 172157 -1 - 339 Nitrogen regulatory protein P-II Ammonia assimilation
fig|6666666.229901.peg.828 CDS AJMG02000012.1 173329 172571 -1 - 759 Transcriptional regulators of sugar metabolism - none -
fig|6666666.229901.peg.829 CDS AJMG02000012.1 173606 174427 2 + 822 D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) Polyhydroxybutyrate metabolism
fig|6666666.229901.peg.830 CDS AJMG02000012.1 174427 175674 1 + 1248 FIG00641944: hypothetical protein - none -
fig|6666666.229901.peg.831 CDS AJMG02000012.1 175671 176303 3 + 633 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases - none -
fig|6666666.229901.peg.832 CDS AJMG02000012.1 176306 177082 2 + 777 Hydroxypyruvate isomerase (EC 5.3.1.22) Glycerate metabolism
fig|6666666.229901.peg.833 CDS AJMG02000012.1 177171 178523 3 + 1353 Low-affinity gluconate/H+ symporter GntU D-gluconate and ketogluconates metabolism
fig|6666666.229901.peg.834 CDS AJMG02000012.1 178548 179888 3 + 1341 FIG00782214: hypothetical protein - none -
fig|6666666.229901.peg.835 CDS AJMG02000012.1 179906 180598 2 + 693 Metal-dependent hydrolase - none -
fig|6666666.229901.peg.836 CDS AJMG02000012.1 180646 182442 1 + 1797 Lysophospholipase (EC 3.1.1.5) Triacylglycerol metabolism
fig|6666666.229901.peg.837 CDS AJMG02000012.1 182638 183456 1 + 819 HMP-PP hydrolase (pyridoxal phosphatase) Cof, detected in genetic screen for thiamin metabolic genes (PMID:15292217) - none -
fig|6666666.229901.peg.838 CDS AJMG02000012.1 186262 183662 -1 - 2601 DNA mismatch repair protein MutS DNA repair, bacterial MutL-MutS system;
DNA repair system including RecA, MutS and a hypothetical protein
fig|6666666.229901.peg.839 CDS AJMG02000012.1 187393 186347 -1 - 1047 hypothetical protein - none -
fig|6666666.229901.peg.840 CDS AJMG02000012.1 188338 187580 -1 - 759 rRNA small subunit methyltransferase J - none -
fig|6666666.229901.peg.841 CDS AJMG02000012.1 189437 188340 -2 - 1098 tRNA (Uracil54-C5-)-methyltransferase (EC 2.1.1.35) - none -
fig|6666666.229901.peg.842 CDS AJMG02000012.1 189836 189507 -2 - 330 Protein yifE - none -
fig|6666666.229901.peg.843 CDS AJMG02000012.1 190513 189896 -1 - 618 Periplasmic thiol:disulfide interchange protein DsbA Biogenesis of c-type cytochromes;
Periplasmic disulfide interchange
fig|6666666.229901.peg.844 CDS AJMG02000012.1 190798 190532 -1 - 267 Protein yihD - none -
fig|6666666.229901.peg.845 CDS AJMG02000012.1 190882 191466 1 + 585 Molybdopterin-guanine dinucleotide biosynthesis protein MobA Molybdenum cofactor biosynthesis;
ar-431-EC Molybdopterin-guanine dinucleotide biosynthesis
fig|6666666.229901.peg.846 CDS AJMG02000012.1 191565 192095 3 + 531 ATPases involved in chromosome partitioning - none -
fig|6666666.229901.peg.847 CDS AJMG02000012.1 192207 193736 3 + 1530 Fructose-specific phosphocarrier protein HPr (EC 2.7.1.69) / PTS system, fructose-specific IIA component (EC 2.7.1.69) Fructose utilization;
Fructose utilization
fig|6666666.229901.peg.848 CDS AJMG02000012.1 193739 194680 2 + 942 1-phosphofructokinase (EC 2.7.1.56) Fructose utilization
fig|6666666.229901.peg.849 CDS AJMG02000012.1 194685 196349 3 + 1665 PTS system, fructose-specific IIB component (EC 2.7.1.69) / PTS system, fructose-specific IIC component (EC 2.7.1.69) Fructose utilization;
Fructose utilization
fig|6666666.229901.peg.850 CDS AJMG02000012.1 196371 196649 3 + 279 hypothetical protein - none -
fig|6666666.229901.peg.851 CDS AJMG02000012.1 196684 196815 1 + 132 hypothetical protein - none -
fig|6666666.229901.peg.852 CDS AJMG02000012.1 197013 196867 -3 - 147 hypothetical protein - none -
fig|6666666.229901.peg.853 CDS AJMG02000012.1 197366 197034 -2 - 333 LysR family regulatory protein CidR Murein hydrolase regulation and cell death
fig|6666666.229901.peg.854 CDS AJMG02000012.1 197381 197932 2 + 552 NAD(P)H oxidoreductase YRKL (EC 1.6.99.-) @ Putative NADPH-quinone reductase (modulator of drug activity B) @ Flavodoxin 2 Flavodoxin;
Flavodoxin
fig|6666666.229901.peg.855 CDS AJMG02000012.1 198014 198352 2 + 339 hypothetical protein - none -
fig|6666666.229901.peg.856 CDS AJMG02000012.1 198498 199202 3 + 705 hypothetical protein - none -
fig|6666666.229901.peg.857 CDS AJMG02000012.1 199644 200054 3 + 411 Preprotein translocase subunit SecE (TC 3.A.5.1.1) LSU ribosomal proteins cluster
fig|6666666.229901.peg.858 CDS AJMG02000012.1 200056 200607 1 + 552 Transcription antitermination protein NusG LSU ribosomal proteins cluster;
Transcription factors bacterial
fig|6666666.229901.peg.859 CDS AJMG02000012.1 200763 201191 3 + 429 LSU ribosomal protein L11p (L12e) LSU ribosomal proteins cluster;
Ribosome LSU bacterial
fig|6666666.229901.peg.860 CDS AJMG02000012.1 201196 201885 1 + 690 LSU ribosomal protein L1p (L10Ae) LSU ribosomal proteins cluster;
Ribosome LSU bacterial
fig|6666666.229901.peg.861 CDS AJMG02000012.1 201900 202076 3 + 177 hypothetical protein - none -
fig|6666666.229901.peg.862 CDS AJMG02000012.1 202247 202738 2 + 492 LSU ribosomal protein L10p (P0) LSU ribosomal proteins cluster;
Ribosome LSU bacterial
fig|6666666.229901.peg.863 CDS AJMG02000012.1 202790 203161 2 + 372 LSU ribosomal protein L7/L12 (P1/P2) LSU ribosomal proteins cluster;
Ribosome LSU bacterial
fig|6666666.229901.peg.864 CDS AJMG02000012.1 203432 207460 2 + 4029 DNA-directed RNA polymerase beta subunit (EC 2.7.7.6) Mycobacterium virulence operon involved in DNA transcription;
RNA polymerase bacterial
fig|6666666.229901.peg.865 CDS AJMG02000012.1 207565 211833 1 + 4269 DNA-directed RNA polymerase beta@1 subunit (EC 2.7.7.6) Mycobacterium virulence operon involved in DNA transcription;
RNA polymerase bacterial
fig|6666666.229901.peg.866 CDS AJMG02000013.1 140 652 2 + 513 Peptide deformylase (EC 3.5.1.88) Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Translation termination factors bacterial
fig|6666666.229901.peg.867 CDS AJMG02000013.1 718 1674 1 + 957 Methionyl-tRNA formyltransferase (EC 2.1.2.9) Conserved gene cluster associated with Met-tRNA formyltransferase;
Translation initiation factors bacterial
fig|6666666.229901.peg.868 CDS AJMG02000013.1 1674 3029 3 + 1356 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) - none -
fig|6666666.229901.peg.869 CDS AJMG02000013.1 3053 4429 2 + 1377 Trk system potassium uptake protein TrkA Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Hyperosmotic potassium uptake;
Potassium homeostasis;
Potassium homeostasis
fig|6666666.229901.peg.870 CDS AJMG02000013.1 4539 4934 3 + 396 Large-conductance mechanosensitive channel Potassium homeostasis
fig|6666666.229901.peg.871 CDS AJMG02000013.1 5029 5463 1 + 435 Ribonuclease E inhibitor RraB RNA processing and degradation, bacterial
fig|6666666.229901.peg.872 CDS AJMG02000013.1 5514 6233 3 + 720 probable periplasmic protein NMA1059 - none -
fig|6666666.229901.peg.873 CDS AJMG02000013.1 6328 6924 1 + 597 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) G3E family of P-loop GTPases (metallocenter biosynthesis);
Peptidyl-prolyl cis-trans isomerase;
Potassium homeostasis
fig|6666666.229901.peg.874 CDS AJMG02000013.1 7214 6996 -2 - 219 hypothetical protein - none -
fig|6666666.229901.peg.875 CDS AJMG02000013.1 7745 7341 -2 - 405 Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48) LMPTP YfkJ cluster;
Protein deglycation
fig|6666666.229901.peg.876 CDS AJMG02000013.1 9201 7870 -3 - 1332 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase Methylthiotransferases;
Ribosomal protein S12p Asp methylthiotransferase
fig|6666666.229901.peg.877 CDS AJMG02000013.1 9410 9694 2 + 285 hypothetical protein - none -
fig|6666666.229901.peg.878 CDS AJMG02000013.1 9645 10007 3 + 363 FIG00696564: hypothetical protein - none -
fig|6666666.229901.peg.879 CDS AJMG02000013.1 10461 10111 -3 - 351 Arsenate reductase (EC 1.20.4.1) Anaerobic respiratory reductases;
Arsenic resistance;
Transcription repair cluster
fig|6666666.229901.peg.880 CDS AJMG02000013.1 10535 11596 2 + 1062 Putative permease PerM (= YfgO) - none -
fig|6666666.229901.peg.881 CDS AJMG02000013.1 12490 11732 -1 - 759 Uridine phosphorylase (EC 2.4.2.3) pyrimidine conversions
fig|6666666.229901.peg.882 CDS AJMG02000013.1 12976 12524 -1 - 453 Regulatory protein AsnC CBSS-262728.1.peg.1737
fig|6666666.229901.peg.883 CDS AJMG02000013.1 13142 14134 2 + 993 Aspartate--ammonia ligase (EC 6.3.1.1) CBSS-262728.1.peg.1737;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229901.peg.884 CDS AJMG02000013.1 15173 14190 -2 - 984 tRNA dihydrouridine synthase A - none -
fig|6666666.229901.peg.885 CDS AJMG02000013.1 16567 15176 -1 - 1392 Chloride channel protein - none -
fig|6666666.229901.peg.886 CDS AJMG02000013.1 16810 17814 1 + 1005 Ornithine carbamoyltransferase (EC 2.1.3.3) Arginine Deiminase Pathway;
Arginine and Ornithine Degradation
fig|6666666.229901.peg.887 CDS AJMG02000013.1 17824 18756 1 + 933 Carbamate kinase (EC 2.7.2.2) Arginine Deiminase Pathway;
Arginine and Ornithine Degradation;
Polyamine Metabolism
fig|6666666.229901.peg.888 CDS AJMG02000013.1 19017 20402 3 + 1386 Arginine/ornithine antiporter ArcD Arginine Deiminase Pathway;
Arginine and Ornithine Degradation;
Polyamine Metabolism
fig|6666666.229901.peg.889 CDS AJMG02000013.1 20493 20960 3 + 468 Transcriptional regulator, AsnC family - none -
fig|6666666.229901.peg.890 CDS AJMG02000013.1 22239 21058 -3 - 1182 Acetyl-CoA acetyltransferase (EC 2.3.1.9) Butanol Biosynthesis;
Isoprenoid Biosynthesis;
Polyhydroxybutyrate metabolism
fig|6666666.229901.peg.891 CDS AJMG02000013.1 23600 22257 -2 - 1344 Short chain fatty acids transporter Polyhydroxybutyrate metabolism
fig|6666666.229901.peg.892 CDS AJMG02000013.1 24268 23603 -1 - 666 Acetyl-CoA:acetoacetyl-CoA transferase, beta subunit (EC 2.8.3.8) - none -
fig|6666666.229901.peg.893 CDS AJMG02000013.1 24870 24280 -3 - 591 Acetyl-CoA:acetoacetyl-CoA transferase, alpha subunit (EC 2.8.3.8) - none -
fig|6666666.229901.peg.894 CDS AJMG02000013.1 25208 26104 2 + 897 Transcriptional regulators, LysR family - none -
fig|6666666.229901.peg.895 CDS AJMG02000013.1 26356 26667 1 + 312 SSU ribosomal protein S10p (S20e) Ribosome SSU bacterial
fig|6666666.229901.peg.896 CDS AJMG02000013.1 26684 27310 2 + 627 LSU ribosomal protein L3p (L3e) Ribosome LSU bacterial
fig|6666666.229901.peg.897 CDS AJMG02000013.1 27326 27928 2 + 603 LSU ribosomal protein L4p (L1e) Ribosome LSU bacterial
fig|6666666.229901.peg.898 CDS AJMG02000013.1 27925 28227 1 + 303 LSU ribosomal protein L23p (L23Ae) Ribosome LSU bacterial
fig|6666666.229901.peg.899 CDS AJMG02000013.1 28248 29069 3 + 822 LSU ribosomal protein L2p (L8e) Ribosome LSU bacterial
fig|6666666.229901.peg.900 CDS AJMG02000013.1 29161 29370 1 + 210 SSU ribosomal protein S19p (S15e) Ribosome SSU bacterial
fig|6666666.229901.peg.901 CDS AJMG02000013.1 29381 29713 2 + 333 LSU ribosomal protein L22p (L17e) Ribosome LSU bacterial
fig|6666666.229901.peg.902 CDS AJMG02000013.1 29730 30437 3 + 708 SSU ribosomal protein S3p (S3e) Ribosome SSU bacterial
fig|6666666.229901.peg.903 CDS AJMG02000013.1 30451 30861 1 + 411 LSU ribosomal protein L16p (L10e) Ribosome LSU bacterial
fig|6666666.229901.peg.904 CDS AJMG02000013.1 30861 31052 3 + 192 LSU ribosomal protein L29p (L35e) Ribosome LSU bacterial
fig|6666666.229901.peg.905 CDS AJMG02000013.1 31052 31309 2 + 258 SSU ribosomal protein S17p (S11e) Ribosome SSU bacterial
fig|6666666.229901.peg.906 CDS AJMG02000014.1 1854 220 -3 - 1635 CTP synthase (EC 6.3.4.2) CTP synthase (EC 6.3.4.2) cluster;
pyrimidine conversions
fig|6666666.229901.peg.907 CDS AJMG02000014.1 1968 3383 3 + 1416 Branched-chain amino acid transport system carrier protein - none -
fig|6666666.229901.peg.908 CDS AJMG02000014.1 3532 3693 1 + 162 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) / Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) Riboflavin synthesis cluster
fig|6666666.229901.peg.909 CDS AJMG02000014.1 4464 3880 -3 - 585 NfuA Fe-S protein maturation Biotin biosynthesis Experimental;
DNA uptake cluster
fig|6666666.229901.peg.910 CDS AJMG02000014.1 5267 4581 -2 - 687 Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy Biotin biosynthesis Experimental;
Biotin synthesis cluster;
CBSS-216591.1.peg.168
fig|6666666.229901.peg.911 CDS AJMG02000014.1 5413 6225 1 + 813 HMP-PP hydrolase (pyridoxal phosphatase) Cof, detected in genetic screen for thiamin metabolic genes (PMID:15292217) - none -
fig|6666666.229901.peg.912 CDS AJMG02000014.1 6409 7521 1 + 1113 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch;
Threonine and Homoserine Biosynthesis
fig|6666666.229901.peg.913 CDS AJMG02000014.1 8175 7594 -3 - 582 Late competence protein ComEA, DNA receptor - none -
fig|6666666.229901.peg.914 CDS AJMG02000014.1 8440 11010 1 + 2571 ClpB protein Protein chaperones;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229901.peg.915 CDS AJMG02000014.1 11139 11020 -3 - 120 hypothetical protein - none -
fig|6666666.229901.peg.916 CDS AJMG02000014.1 11612 11112 -2 - 501 hypothetical protein - none -
fig|6666666.229901.peg.917 CDS AJMG02000014.1 11795 12823 2 + 1029 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) - none -
fig|6666666.229901.peg.918 CDS AJMG02000014.1 12823 13002 1 + 180 hypothetical protein - none -
fig|6666666.229901.peg.919 CDS AJMG02000014.1 13081 13905 1 + 825 Diaminopimelate epimerase (EC 5.1.1.7) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229901.peg.920 CDS AJMG02000014.1 13915 14805 1 + 891 Tyrosine recombinase XerC - none -
fig|6666666.229901.peg.921 CDS AJMG02000014.1 14819 15532 2 + 714 Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5@1-phosphoribitylamino)uracil phosphatase Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants
fig|6666666.229901.peg.922 CDS AJMG02000014.1 16058 15633 -2 - 426 Excinuclease ATPase subunit - none -
fig|6666666.229901.peg.923 CDS AJMG02000014.1 16086 16409 3 + 324 hypothetical protein - none -
fig|6666666.229901.peg.924 CDS AJMG02000014.1 16439 17182 2 + 744 3-oxoacyl-[ACP] synthase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229901.peg.925 CDS AJMG02000014.1 17167 17955 1 + 789 FIG018329: 1-acyl-sn-glycerol-3-phosphate acyltransferase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229901.peg.926 CDS AJMG02000014.1 17933 18196 2 + 264 Acyl carrier protein (ACP1) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229901.peg.927 CDS AJMG02000014.1 18199 18450 1 + 252 Acyl carrier protein (ACP2) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229901.peg.928 CDS AJMG02000014.1 18450 20117 3 + 1668 FIGfam138462: Acyl-CoA synthetase, AMP-(fatty) acid ligase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229901.peg.929 CDS AJMG02000014.1 20143 20688 1 + 546 FIG017861: hypothetical protein Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229901.peg.930 CDS AJMG02000014.1 20685 22046 3 + 1362 FIGfam138462: Acyl-CoA synthetase, AMP-(fatty) acid ligase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229901.peg.931 CDS AJMG02000014.1 22046 22768 2 + 723 FIG143263: Glycosyl transferase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229901.peg.932 CDS AJMG02000014.1 22765 23691 1 + 927 Lysophospholipid acyltransferase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229901.peg.933 CDS AJMG02000014.1 23688 24134 3 + 447 FIG002571: 4-hydroxybenzoyl-CoA thioesterase domain protein Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229901.peg.934 CDS AJMG02000014.1 24131 24715 2 + 585 FIG027190: Putative transmembrane protein Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229901.peg.935 CDS AJMG02000014.1 24722 26995 2 + 2274 FIG021862: membrane protein, exporter Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229901.peg.936 CDS AJMG02000014.1 27125 27604 2 + 480 FIG085779: Lipoprotein Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229901.peg.937 CDS AJMG02000014.1 27613 28836 1 + 1224 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) FabV like Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229901.peg.938 CDS AJMG02000014.1 28829 29272 2 + 444 3-hydroxydecanoyl-[ACP] dehydratase (EC 4.2.1.60) Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229901.peg.939 CDS AJMG02000014.1 29322 30050 3 + 729 3-oxoacyl-[ACP] reductase (EC 1.1.1.100) Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229901.peg.940 CDS AJMG02000014.1 30070 31314 1 + 1245 FIG138576: 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229901.peg.941 CDS AJMG02000014.1 33179 31725 -2 - 1455 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) D-gluconate and ketogluconates metabolism;
Pentose phosphate pathway
fig|6666666.229901.peg.942 CDS AJMG02000014.1 33200 33346 2 + 147 hypothetical protein - none -
fig|6666666.229901.peg.943 CDS AJMG02000014.1 34193 33735 -2 - 459 Uncharacterized virulence-associated protein D - none -
fig|6666666.229901.peg.944 CDS AJMG02000014.1 34527 34273 -3 - 255 Glutaredoxin-related protein Glutaredoxins
fig|6666666.229901.peg.945 CDS AJMG02000014.1 35232 34540 -3 - 693 Aspartate racemase (EC 5.1.1.13) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229901.peg.946 CDS AJMG02000014.1 35775 35347 -3 - 429 FIG00848466: hypothetical protein - none -
fig|6666666.229901.peg.947 CDS AJMG02000014.1 36800 36102 -2 - 699 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type Pentose phosphate pathway
fig|6666666.229901.peg.948 CDS AJMG02000014.1 38612 37053 -2 - 1560 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) Pentose phosphate pathway
fig|6666666.229901.peg.949 CDS AJMG02000014.1 39444 38635 -3 - 810 3@1(2@1),5@1-bisphosphate nucleotidase (EC 3.1.3.7) - none -
fig|6666666.229901.peg.950 CDS AJMG02000014.1 39910 39482 -1 - 429 hypothetical protein - none -
fig|6666666.229901.peg.951 CDS AJMG02000014.1 41978 39972 -2 - 2007 oligopeptide transporter - none -
fig|6666666.229901.peg.952 CDS AJMG02000014.1 42347 42973 2 + 627 membrane protein ykgB - none -
fig|6666666.229901.peg.953 CDS AJMG02000014.1 43044 43925 3 + 882 Transcriptional regulator, AraC family - none -
fig|6666666.229901.peg.954 CDS AJMG02000014.1 44520 43930 -3 - 591 ADP compounds hydrolase NudE (EC 3.6.1.-) Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229901.peg.955 CDS AJMG02000014.1 44559 45218 3 + 660 FIG001957: putative hydrolase CBSS-584.1.peg.3382
fig|6666666.229901.peg.956 CDS AJMG02000014.1 45231 45647 3 + 417 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) CBSS-584.1.peg.3382;
Cell division-ribosomal stress proteins cluster;
DNA replication cluster 1;
Heat shock dnaK gene cluster extended
fig|6666666.229901.peg.957 CDS AJMG02000014.1 45715 46587 1 + 873 33 kDa chaperonin (Heat shock protein 33) (HSP33) CBSS-584.1.peg.3382
fig|6666666.229901.peg.958 CDS AJMG02000014.1 46990 47214 1 + 225 Twin-arginine translocation protein TatA Cluster-based Subsystem Grouping Hypotheticals - perhaps Proteosome Related;
Twin-arginine translocation system
fig|6666666.229901.peg.959 CDS AJMG02000014.1 47218 47880 1 + 663 Twin-arginine translocation protein TatB Twin-arginine translocation system
fig|6666666.229901.peg.960 CDS AJMG02000014.1 47918 48682 2 + 765 Twin-arginine translocation protein TatC Cluster-based Subsystem Grouping Hypotheticals - perhaps Proteosome Related;
Twin-arginine translocation system
fig|6666666.229901.peg.961 CDS AJMG02000014.1 48701 49723 2 + 1023 Porphobilinogen synthase (EC 4.2.1.24) Heme and Siroheme Biosynthesis
fig|6666666.229901.peg.962 CDS AJMG02000014.1 52016 49935 -2 - 2082 Glycyl-tRNA synthetase beta chain (EC 6.1.1.14) Glycyl-tRNA synthetase;
Glycyl-tRNA synthetase containing cluster;
tRNA aminoacylation, Gly
fig|6666666.229901.peg.963 CDS AJMG02000014.1 52802 52098 -2 - 705 hypothetical protein - none -
fig|6666666.229901.peg.964 CDS AJMG02000014.1 53183 53007 -2 - 177 hypothetical protein - none -
fig|6666666.229901.peg.965 CDS AJMG02000014.1 53610 53350 -3 - 261 Glutaredoxin-related protein Glutaredoxins
fig|6666666.229901.peg.966 CDS AJMG02000014.1 54565 53660 -1 - 906 Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14) Glycyl-tRNA synthetase;
Glycyl-tRNA synthetase containing cluster;
tRNA aminoacylation, Gly
fig|6666666.229901.peg.967 CDS AJMG02000014.1 54918 54757 -3 - 162 Ferredoxin-type protein NapF (periplasmic nitrate reductase) - none -
fig|6666666.229901.peg.968 CDS AJMG02000014.1 55546 54932 -1 - 615 Putative oxidoreductase component of anaerobic dehydrogenases; Functional role page for Chaperone protein TorD - none -
fig|6666666.229901.peg.969 CDS AJMG02000014.1 56433 55594 -3 - 840 Anaerobic dimethyl sulfoxide reductase chain C (EC 1.8.5.3) - none -
fig|6666666.229901.peg.970 CDS AJMG02000014.1 57058 56435 -1 - 624 Anaerobic dimethyl sulfoxide reductase chain B (EC 1.8.5.3) - none -
fig|6666666.229901.peg.971 CDS AJMG02000014.1 58424 57069 -2 - 1356 Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-) Anaerobic respiratory reductases
fig|6666666.229901.peg.972 CDS AJMG02000014.1 59106 58408 -3 - 699 Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.5.3) - none -
fig|6666666.229901.peg.973 CDS AJMG02000014.1 59381 59241 -2 - 141 hypothetical protein - none -
fig|6666666.229901.peg.974 CDS AJMG02000014.1 60231 60082 -3 - 150 hypothetical protein - none -
fig|6666666.229901.peg.975 CDS AJMG02000014.1 61018 60206 -1 - 813 cell filamentation-like protein - none -
fig|6666666.229901.peg.976 CDS AJMG02000014.1 61178 60999 -2 - 180 hypothetical protein - none -
fig|6666666.229901.peg.977 CDS AJMG02000014.1 61327 61196 -1 - 132 hypothetical protein - none -
fig|6666666.229901.peg.978 CDS AJMG02000014.1 61761 61507 -3 - 255 hypothetical protein - none -
fig|6666666.229901.peg.979 CDS AJMG02000014.1 63773 63015 -2 - 759 Ferric siderophore transport system, periplasmic binding protein TonB Hemin transport system;
Ton and Tol transport systems
fig|6666666.229901.peg.980 CDS AJMG02000014.1 64229 63783 -2 - 447 Biopolymer transport protein ExbD/TolR Ton and Tol transport systems
fig|6666666.229901.peg.981 CDS AJMG02000014.1 64703 64233 -2 - 471 Ferric siderophore transport system, biopolymer transport protein ExbB Ton and Tol transport systems
fig|6666666.229901.peg.982 CDS AJMG02000014.1 66140 64878 -2 - 1263 Magnesium and cobalt efflux protein CorC CBSS-56780.10.peg.1536;
Copper homeostasis: copper tolerance;
Glycyl-tRNA synthetase containing cluster;
Magnesium transport;
tRNA-methylthiotransferase containing cluster
fig|6666666.229901.peg.983 CDS AJMG02000014.1 67009 66215 -1 - 795 FIG001154: CcsA-related protein - none -
fig|6666666.229901.peg.984 CDS AJMG02000014.1 67163 68542 2 + 1380 Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1) Bacterial signal recognition particle (SRP);
Universal GTPases
fig|6666666.229901.peg.985 CDS AJMG02000014.1 68827 68693 -1 - 135 hypothetical protein - none -
fig|6666666.229901.peg.986 CDS AJMG02000014.1 69993 69163 -3 - 831 S-formylglutathione hydrolase (EC 3.1.2.12) Glutathione-dependent pathway of formaldehyde detoxification
fig|6666666.229901.peg.987 CDS AJMG02000014.1 71132 70008 -2 - 1125 S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) Glutathione-dependent pathway of formaldehyde detoxification
fig|6666666.229901.peg.988 CDS AJMG02000014.1 71271 71678 3 + 408 Transcriptional regulator, MerR family Cobalt-zinc-cadmium resistance
fig|6666666.229901.peg.989 CDS AJMG02000014.1 72541 71792 -1 - 750 Sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140) - none -
fig|6666666.229901.peg.990 CDS AJMG02000014.1 74130 72763 -3 - 1368 Adenylosuccinate lyase (EC 4.3.2.2) CBSS-354.1.peg.876;
Purine conversions
fig|6666666.229901.peg.991 CDS AJMG02000014.1 74765 74154 -2 - 612 FIG002903: a protein of unknown function perhaps involved in purine metabolism CBSS-354.1.peg.876
fig|6666666.229901.peg.992 CDS AJMG02000014.1 74878 75288 1 + 411 Copper metallochaperone, bacterial analog of Cox17 protein Biogenesis of cytochrome c oxidases
fig|6666666.229901.peg.993 CDS AJMG02000014.1 75427 75963 1 + 537 Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR De Novo Pyrimidine Synthesis;
De Novo Pyrimidine Synthesis;
pyrimidine conversions
fig|6666666.229901.peg.994 CDS AJMG02000014.1 76030 76962 1 + 933 Survival protein SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA) (EC 5.2.1.8) Lipopolysaccharide assembly;
Peptidyl-prolyl cis-trans isomerase;
Periplasmic Stress Response
fig|6666666.229901.peg.995 CDS AJMG02000014.1 77041 77904 1 + 864 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase (EC 2.1.1.182) RNA methylation;
Ribosome biogenesis bacterial
fig|6666666.229901.peg.996 CDS AJMG02000014.1 77920 78747 1 + 828 Bis(5@1-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) - none -
fig|6666666.229901.peg.997 CDS AJMG02000014.1 78835 79245 1 + 411 nucleotidyltransferase substrate binding protein, HI0074 family - none -
fig|6666666.229901.peg.998 CDS AJMG02000014.1 79229 79462 2 + 234 Uncharacterized protein HI0073 - none -
fig|6666666.229901.peg.999 CDS AJMG02000014.1 79550 80182 2 + 633 FIG00696423: hypothetical protein - none -
fig|6666666.229901.peg.1000 CDS AJMG02000014.1 80136 80261 3 + 126 hypothetical protein - none -
fig|6666666.229901.peg.1001 CDS AJMG02000014.1 80303 82891 2 + 2589 Leucyl-tRNA synthetase (EC 6.1.1.4) CBSS-208964.1.peg.3988;
tRNA aminoacylation, Leu
fig|6666666.229901.peg.1002 CDS AJMG02000014.1 83044 82916 -1 - 129 hypothetical protein - none -
fig|6666666.229901.peg.1003 CDS AJMG02000014.1 83033 83536 2 + 504 LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B) CBSS-208964.1.peg.3988;
Lipopolysaccharide assembly
fig|6666666.229901.peg.1004 CDS AJMG02000014.1 83536 84570 1 + 1035 DNA polymerase III delta subunit (EC 2.7.7.7) CBSS-208964.1.peg.3988
fig|6666666.229901.peg.1005 CDS AJMG02000014.1 85466 85062 -2 - 405 Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-) Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229901.peg.1006 CDS AJMG02000014.1 88305 85543 -3 - 2763 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) - none -
fig|6666666.229901.peg.1007 CDS AJMG02000014.1 88632 88315 -3 - 318 hypothetical protein - none -
fig|6666666.229901.peg.1008 CDS AJMG02000014.1 88724 89035 2 + 312 Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives DNA replication cluster 1
fig|6666666.229901.peg.1009 CDS AJMG02000014.1 89144 89554 2 + 411 Mercuric resistance operon regulatory protein - none -
fig|6666666.229901.peg.1010 CDS AJMG02000014.1 91164 89623 -3 - 1542 Excinuclease ABC subunit A DNA repair, UvrABC system
fig|6666666.229901.peg.1011 CDS AJMG02000014.1 92624 93103 2 + 480 Single-stranded DNA-binding protein DNA repair, bacterial;
DNA repair, bacterial RecFOR pathway
fig|6666666.229901.peg.1012 CDS AJMG02000014.1 94063 93209 -1 - 855 Methyl-directed repair DNA adenine methylase (EC 2.1.1.72) DNA repair, bacterial
fig|6666666.229901.peg.1013 CDS AJMG02000014.1 95154 94066 -3 - 1089 3-dehydroquinate synthase (EC 4.2.3.4) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate);
Type IV pilus
fig|6666666.229901.peg.1014 CDS AJMG02000014.1 95705 95178 -2 - 528 Shikimate kinase I (EC 2.7.1.71) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229901.peg.1015 CDS AJMG02000014.1 97328 95919 -2 - 1410 Type IV pilus biogenesis protein PilQ; Competence protein E DNA uptake cluster;
Type IV pilus
fig|6666666.229901.peg.1016 CDS AJMG02000014.1 97740 97348 -3 - 393 Type IV pilus biogenesis protein PilQ; Competence protein D DNA uptake cluster;
Type IV pilus
fig|6666666.229901.peg.1017 CDS AJMG02000014.1 98264 97740 -2 - 525 Competence protein C; Chromosome segregation ATPases DNA uptake cluster
fig|6666666.229901.peg.1018 CDS AJMG02000014.1 98779 98261 -1 - 519 Type IV pilus biogenesis protein PilN; Competence protein B DNA uptake cluster;
Type IV pilus
fig|6666666.229901.peg.1019 CDS AJMG02000014.1 99599 98790 -2 - 810 Type IV pilus biogenesis protein PilM; Competence protein A DNA uptake cluster;
Type IV pilus
fig|6666666.229901.peg.1020 CDS AJMG02000014.1 100633 100094 -1 - 540 hypothetical protein - none -
fig|6666666.229901.peg.1021 CDS AJMG02000014.1 101513 102310 2 + 798 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) DNA uptake cluster;
Peptidoglycan Biosynthesis;
Type IV pilus
fig|6666666.229901.peg.1022 CDS AJMG02000014.1 102405 103250 3 + 846 Protein involved in catabolism of external DNA DNA processing cluster;
DNA uptake cluster
fig|6666666.229901.peg.1023 CDS AJMG02000014.1 103345 104715 1 + 1371 Glutathione reductase (EC 1.8.1.7) Glutathione: Redox cycle
fig|6666666.229901.peg.1024 CDS AJMG02000014.1 105492 104848 -3 - 645 Cyclic AMP receptor protein cAMP signaling in bacteria
fig|6666666.229901.peg.1025 CDS AJMG02000014.1 105748 105530 -1 - 219 FIG00696234: hypothetical protein - none -
fig|6666666.229901.peg.1026 CDS AJMG02000014.1 106371 105772 -3 - 600 Transcriptional regulator SlmA, TetR family - none -
fig|6666666.229901.peg.1027 CDS AJMG02000014.1 106826 106371 -2 - 456 Deoxyuridine 5@1-triphosphate nucleotidohydrolase (EC 3.6.1.23) Housecleaning nucleoside triphosphate pyrophosphatases;
Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229901.peg.1028 CDS AJMG02000014.1 108094 106895 -1 - 1200 Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) / Phosphopantothenoylcysteine synthetase (EC 6.3.2.5) Coenzyme A Biosynthesis;
Coenzyme A Biosynthesis
fig|6666666.229901.peg.1029 CDS AJMG02000014.1 108093 108221 3 + 129 hypothetical protein - none -
fig|6666666.229901.peg.1030 CDS AJMG02000014.1 108272 108931 2 + 660 DNA repair protein RadC DNA repair, bacterial
fig|6666666.229901.peg.1031 CDS AJMG02000014.1 109203 109376 3 + 174 LSU ribosomal protein L28p Ribosome LSU bacterial
fig|6666666.229901.peg.1032 CDS AJMG02000014.1 109388 109558 2 + 171 LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-independent Ribosome LSU bacterial;
Ribosome LSU bacterial
fig|6666666.229901.peg.1033 CDS AJMG02000014.1 109598 110455 2 + 858 Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) DNA Repair Base Excision
fig|6666666.229901.peg.1034 CDS AJMG02000014.1 111441 110458 -3 - 984 COG0859: ADP-heptose:LPS heptosyltransferase - none -
fig|6666666.229901.peg.1035 CDS AJMG02000014.1 112542 111520 -3 - 1023 COG0859: ADP-heptose:LPS heptosyltransferase - none -
fig|6666666.229901.peg.1036 CDS AJMG02000014.1 113235 112543 -3 - 693 Beta-1,4-galactosyltransferase LOS core oligosaccharide biosynthesis
fig|6666666.229901.peg.1037 CDS AJMG02000014.1 113510 113298 -2 - 213 LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-dependent Ribosome LSU bacterial;
Ribosome LSU bacterial
fig|6666666.229901.peg.1038 CDS AJMG02000014.1 113768 114616 2 + 849 Lipooligosaccharide biosynthesis protein lex-1 (EC 2.-.-.-) - none -
fig|6666666.229901.peg.1039 CDS AJMG02000014.1 114625 115629 1 + 1005 putative capsular polysaccharide synthesis protein - none -
fig|6666666.229901.peg.1040 CDS AJMG02000014.1 116499 115636 -3 - 864 Involved in lipopolysaccharide biosynthesis - none -
fig|6666666.229901.peg.1041 CDS AJMG02000014.1 116684 118924 2 + 2241 Helicase PriA essential for oriC/DnaA-independent DNA replication Conserved gene cluster associated with Met-tRNA formyltransferase
fig|6666666.229901.peg.1042 CDS AJMG02000014.1 119034 119846 3 + 813 Cell division protein - none -
fig|6666666.229901.peg.1043 CDS AJMG02000014.1 120046 120612 1 + 567 Probable Co/Zn/Cd efflux system membrane fusion protein Cobalt-zinc-cadmium resistance
fig|6666666.229901.peg.1044 CDS AJMG02000014.1 120638 121828 2 + 1191 Probable Co/Zn/Cd efflux system membrane fusion protein Cobalt-zinc-cadmium resistance
fig|6666666.229901.peg.1045 CDS AJMG02000014.1 121842 124940 3 + 3099 RND multidrug efflux transporter; Acriflavin resistance protein Multidrug Resistance Efflux Pumps
fig|6666666.229901.peg.1046 CDS AJMG02000014.1 125094 125894 3 + 801 Orf2 - none -
fig|6666666.229901.peg.1047 CDS AJMG02000014.1 126547 127494 1 + 948 Magnesium and cobalt transport protein CorA Magnesium transport
fig|6666666.229901.peg.1048 CDS AJMG02000014.1 127510 128070 1 + 561 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) CBSS-630.2.peg.3360
fig|6666666.229901.peg.1049 CDS AJMG02000014.1 128096 128389 2 + 294 COG1872 - none -
fig|6666666.229901.peg.1050 CDS AJMG02000014.1 128506 129165 1 + 660 Oxygen-insensitive NAD(P)H nitroreductase (EC 1.-.-.-) / Dihydropteridine reductase (EC 1.5.1.34) - none -
fig|6666666.229901.peg.1051 CDS AJMG02000014.1 129230 131203 2 + 1974 Phosphoglycerol transferase I (EC 2.7.8.20) Synthesis of osmoregulated periplasmic glucans
fig|6666666.229901.peg.1052 CDS AJMG02000014.1 132110 131373 -2 - 738 COG1496: Uncharacterized conserved protein - none -
fig|6666666.229901.peg.1053 CDS AJMG02000014.1 133086 132112 -3 - 975 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) RNA pseudouridine syntheses;
Ribosome biogenesis bacterial
fig|6666666.229901.peg.1054 CDS AJMG02000014.1 133193 133981 2 + 789 Probable component of the lipoprotein assembly complex (forms a complex with YaeT, YfgL, and NlpB) Lipopolysaccharide assembly
fig|6666666.229901.peg.1055 CDS AJMG02000014.1 134592 134017 -3 - 576 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) 5-FCL-like protein;
Folate Biosynthesis;
One-carbon metabolism by tetrahydropterines
fig|6666666.229901.peg.1056 CDS AJMG02000014.1 135212 134886 -2 - 327 Z-ring-associated protein ZapA Bacterial Cytoskeleton
fig|6666666.229901.peg.1057 CDS AJMG02000014.1 135371 135919 2 + 549 FIG001590: Putative conserved exported protein precursor CBSS-87626.3.peg.3639
fig|6666666.229901.peg.1058 CDS AJMG02000014.1 135934 137235 1 + 1302 Xaa-Pro aminopeptidase (EC 3.4.11.9) Aminopeptidases (EC 3.4.11.-);
CBSS-87626.3.peg.3639
fig|6666666.229901.peg.1059 CDS AJMG02000014.1 137544 137389 -3 - 156 hypothetical protein - none -
fig|6666666.229901.peg.1060 CDS AJMG02000014.1 137730 137978 3 + 249 SSU ribosomal protein S16p Ribosome SSU bacterial
fig|6666666.229901.peg.1061 CDS AJMG02000014.1 138004 138531 1 + 528 16S rRNA processing protein RimM Ribosome biogenesis bacterial
fig|6666666.229901.peg.1062 CDS AJMG02000014.1 138597 139346 3 + 750 tRNA (Guanine37-N1) -methyltransferase (EC 2.1.1.31) RNA methylation;
Ribosome biogenesis bacterial;
tRNA modification Bacteria
fig|6666666.229901.peg.1063 CDS AJMG02000014.1 139372 139722 1 + 351 LSU ribosomal protein L19p Ribosome LSU bacterial
fig|6666666.229901.peg.1064 CDS AJMG02000014.1 140320 139832 -1 - 489 Rod shape-determining protein MreD Bacterial Cell Division;
Bacterial Cytoskeleton;
CBSS-354.1.peg.2917
fig|6666666.229901.peg.1065 CDS AJMG02000014.1 141393 140320 -3 - 1074 Rod shape-determining protein MreC Bacterial Cell Division;
Bacterial Cytoskeleton;
CBSS-354.1.peg.2917
fig|6666666.229901.peg.1066 CDS AJMG02000014.1 142518 141463 -3 - 1056 Rod shape-determining protein MreB Bacterial Cell Division;
Bacterial Cytoskeleton
fig|6666666.229901.peg.1067 CDS AJMG02000014.1 142768 145152 1 + 2385 3@1-to-5@1 exoribonuclease RNase R RNA processing and degradation, bacterial
fig|6666666.229901.peg.1068 CDS AJMG02000014.1 145171 145908 1 + 738 23S rRNA (guanosine-2@1-O-) -methyltransferase rlmB (EC 2.1.1.-) RNA methylation
fig|6666666.229901.peg.1069 CDS AJMG02000014.1 146241 147683 3 + 1443 Glycerol-3-phosphate transporter - none -
fig|6666666.229901.peg.1070 CDS AJMG02000014.1 147917 148999 2 + 1083 Glycerophosphoryl diester phosphodiesterase, periplasmic (EC 3.1.4.46) - none -
fig|6666666.229901.peg.1071 CDS AJMG02000014.1 150174 149056 -3 - 1119 Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake CBSS-272943.3.peg.1367;
Conserved gene cluster associated with Met-tRNA formyltransferase;
YrdC-YciO-Sua5 protein family
fig|6666666.229901.peg.1072 CDS AJMG02000014.1 150843 150394 -3 - 450 LSU ribosomal protein L9p Primosomal replication protein N clusters with ribosomal proteins;
Ribosome LSU bacterial
fig|6666666.229901.peg.1073 CDS AJMG02000014.1 151089 150859 -3 - 231 SSU ribosomal protein S18p @ SSU ribosomal protein S18p, zinc-independent Primosomal replication protein N clusters with ribosomal proteins;
Ribosome SSU bacterial;
Ribosome SSU bacterial
fig|6666666.229901.peg.1074 CDS AJMG02000014.1 151428 151102 -3 - 327 Primosomal replication protein N Primosomal replication protein N clusters with ribosomal proteins
fig|6666666.229901.peg.1075 CDS AJMG02000014.1 151792 151415 -1 - 378 SSU ribosomal protein S6p Primosomal replication protein N clusters with ribosomal proteins;
Ribosome SSU bacterial
fig|6666666.229901.peg.1076 CDS AJMG02000014.1 152567 151944 -2 - 624 SOS-response repressor and protease LexA (EC 3.4.21.88) DNA repair, bacterial
fig|6666666.229901.peg.1077 CDS AJMG02000014.1 152775 155213 3 + 2439 Glycerol-3-phosphate acyltransferase (EC 2.3.1.15) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229901.peg.1078 CDS AJMG02000014.1 157098 155254 -3 - 1845 Lipid A export ATP-binding/permease protein MsbA - none -
fig|6666666.229901.peg.1079 CDS AJMG02000014.1 158103 157186 -3 - 918 transcriptional regulator MtrA - none -
fig|6666666.229901.peg.1080 CDS AJMG02000014.1 158207 158548 2 + 342 Possible carboxymuconolactone decarboxylase family protein (EC 4.1.1.44) - none -
fig|6666666.229901.peg.1081 CDS AJMG02000014.1 159688 158645 -1 - 1044 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) LOS core oligosaccharide biosynthesis
fig|6666666.229901.peg.1082 CDS AJMG02000014.1 159777 160502 3 + 726 3-deoxy-D-manno-octulosonic acid kinase (EC 2.7.1.-) - none -
fig|6666666.229901.peg.1083 CDS AJMG02000014.1 161045 160551 -2 - 495 Phosphopantetheine adenylyltransferase (EC 2.7.7.3) CBSS-266117.6.peg.1260;
CBSS-269801.1.peg.1715;
Coenzyme A Biosynthesis
fig|6666666.229901.peg.1084 CDS AJMG02000014.1 162329 161046 -2 - 1284 Lipid IVA 3-deoxy-D-manno-octulosonic acid transferase (EC 2.4.99.12) [often with (EC 2.4.99.13) also] - none -
fig|6666666.229901.peg.1085 CDS AJMG02000014.1 162428 163189 2 + 762 Lipopolysaccharide biosynthesis glycosyltransferase - none -
fig|6666666.229901.peg.1086 CDS AJMG02000014.1 163462 163641 1 + 180 hypothetical protein - none -
fig|6666666.229901.peg.1087 CDS AJMG02000014.1 165055 163886 -1 - 1170 Lipoprotein NlpD Stationary phase repair cluster
fig|6666666.229901.peg.1088 CDS AJMG02000014.1 165263 165072 -2 - 192 Cobalamin biosynthesis protein CobN and related Mg-chelatases - none -
fig|6666666.229901.peg.1089 CDS AJMG02000014.1 165853 165278 -1 - 576 FIG139438: lipoprotein B Stationary phase repair cluster
fig|6666666.229901.peg.1090 CDS AJMG02000014.1 166621 165881 -1 - 741 5-nucleotidase SurE (EC 3.1.3.5) @ Exopolyphosphatase (EC 3.6.1.11) Housecleaning nucleoside triphosphate pyrophosphatases;
Phosphate metabolism;
Polyphosphate;
Stationary phase repair cluster
fig|6666666.229901.peg.1091 CDS AJMG02000014.1 167664 166654 -3 - 1011 tRNA pseudouridine 13 synthase (EC 4.2.1.-) Stationary phase repair cluster;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229901.peg.1092 CDS AJMG02000014.1 168140 167661 -2 - 480 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis;
Stationary phase repair cluster
fig|6666666.229901.peg.1093 CDS AJMG02000014.1 168832 168137 -1 - 696 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC 2.7.7.60) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis;
Stationary phase repair cluster
fig|6666666.229901.peg.1094 CDS AJMG02000014.1 169110 168832 -3 - 279 Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage Bacterial Cell Division;
Bacterial Cytoskeleton;
Cell division-ribosomal stress proteins cluster;
Stationary phase repair cluster
fig|6666666.229901.peg.1095 CDS AJMG02000014.1 169262 169936 2 + 675 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) Conserved gene cluster associated with Met-tRNA formyltransferase;
Pentose phosphate pathway;
Riboflavin synthesis cluster
fig|6666666.229901.peg.1096 CDS AJMG02000014.1 169939 170613 1 + 675 Phosphoglycolate phosphatase (EC 3.1.3.18) 2-phosphoglycolate salvage;
Glycolate, glyoxylate interconversions
fig|6666666.229901.peg.1097 CDS AJMG02000014.1 170897 171547 2 + 651 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) Bacterial Cell Division
fig|6666666.229901.peg.1098 CDS AJMG02000014.1 171556 172491 1 + 936 Cell division protein FtsX Bacterial Cell Division
fig|6666666.229901.peg.1099 CDS AJMG02000014.1 173041 172625 -1 - 417 Threonine dehydratase biosynthetic (EC 4.3.1.19) - none -
fig|6666666.229901.peg.1100 CDS AJMG02000014.1 173499 173092 -3 - 408 Threonine dehydratase biosynthetic (EC 4.3.1.19) - none -
fig|6666666.229901.peg.1101 CDS AJMG02000014.1 174457 173573 -1 - 885 Acetolactate synthase large subunit (EC 2.2.1.6) - none -
fig|6666666.229901.peg.1102 CDS AJMG02000014.1 174744 175562 3 + 819 Cof protein, HD superfamily hydrolase Housecleaning nucleoside triphosphate pyrophosphatases
fig|6666666.229901.peg.1103 CDS AJMG02000014.1 176523 175600 -3 - 924 Lysophospholipase L2 (EC 3.1.1.5) Triacylglycerol metabolism
fig|6666666.229901.peg.1104 CDS AJMG02000014.1 177658 176516 -1 - 1143 O-antigen ligase LOS core oligosaccharide biosynthesis
fig|6666666.229901.peg.1105 CDS AJMG02000014.1 177692 177853 2 + 162 hypothetical protein - none -
fig|6666666.229901.peg.1106 CDS AJMG02000014.1 178945 177866 -1 - 1080 Fructose-bisphosphate aldolase class II (EC 4.1.2.13) Glycolysis and Gluconeogenesis
fig|6666666.229901.peg.1107 CDS AJMG02000014.1 180173 179010 -2 - 1164 Phosphoglycerate kinase (EC 2.7.2.3) Glycolysis and Gluconeogenesis
fig|6666666.229901.peg.1108 CDS AJMG02000014.1 180981 180286 -3 - 696 Probable ribonuclease HI0526 precursor - none -
fig|6666666.229901.peg.1109 CDS AJMG02000014.1 181088 181309 2 + 222 4Fe-4S ferredoxin, iron-sulfur binding - none -
fig|6666666.229901.peg.1110 CDS AJMG02000014.1 182451 181375 -3 - 1077 hypothetical tRNA/rRNA methyltransferase yfiF [EC:2.1.1.-] RNA methylation;
tRNA modification Bacteria
fig|6666666.229901.peg.1111 CDS AJMG02000014.1 182637 184004 3 + 1368 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229901.peg.1112 CDS AJMG02000015.1 707 195 -2 - 513 Protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-) Heme and Siroheme Biosynthesis;
Transport system clustering with HemG
fig|6666666.229901.peg.1113 CDS AJMG02000015.1 2170 707 -1 - 1464 Potassium uptake protein TrkH Hyperosmotic potassium uptake;
Potassium homeostasis;
Potassium homeostasis;
Transport system clustering with HemG
fig|6666666.229901.peg.1114 CDS AJMG02000015.1 2404 2189 -1 - 216 FIG000605: protein co-occurring with transport systems (COG1739) Transport system clustering with HemG
fig|6666666.229901.peg.1115 CDS AJMG02000015.1 2557 2435 -1 - 123 FIG000605: protein co-occurring with transport systems (COG1739) Transport system clustering with HemG
fig|6666666.229901.peg.1116 CDS AJMG02000015.1 2706 2551 -3 - 156 FIG000605: protein co-occurring with transport systems (COG1739) Transport system clustering with HemG
fig|6666666.229901.peg.1117 CDS AJMG02000015.1 2794 3039 1 + 246 tRNA 5-methylaminomethyl-2-thiouridine synthase TusA mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.229901.peg.1118 CDS AJMG02000015.1 3359 4630 2 + 1272 Nicotinamide-nucleotide adenylyltransferase, NadR family (EC 2.7.7.1) / Ribosylnicotinamide kinase (EC 2.7.1.22) NAD and NADP cofactor biosynthesis global;
NAD and NADP cofactor biosynthesis global
fig|6666666.229901.peg.1119 CDS AJMG02000015.1 4646 5329 2 + 684 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases - none -
fig|6666666.229901.peg.1120 CDS AJMG02000015.1 5459 6688 2 + 1230 Tyrosine-specific transport protein - none -
fig|6666666.229901.peg.1121 CDS AJMG02000016.1 121 318 1 + 198 hypothetical protein - none -
fig|6666666.229901.peg.1122 CDS AJMG02000016.1 1299 751 -3 - 549 putative membrane protein - none -
fig|6666666.229901.peg.1123 CDS AJMG02000016.1 1286 1420 2 + 135 hypothetical protein - none -
fig|6666666.229901.peg.1124 CDS AJMG02000016.1 1435 2199 1 + 765 Permeases of the drug/metabolite transporter (DMT) superfamily - none -
fig|6666666.229901.peg.1125 CDS AJMG02000016.1 3470 2463 -2 - 1008 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) Cluster Ytf and putative sugar transporter;
Glycolysis and Gluconeogenesis;
Putative sugar ABC transporter (ytf cluster)
fig|6666666.229901.peg.1126 CDS AJMG02000016.1 3628 5001 1 + 1374 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (EC 6.3.2.-) Peptidoglycan biosynthesis--gjo;
Recycling of Peptidoglycan Amino Acids
fig|6666666.229901.peg.1127 CDS AJMG02000016.1 5381 6499 2 + 1119 Membrane-bound lytic murein transglycosylase A precursor (EC 3.2.1.-) Murein Hydrolases
fig|6666666.229901.peg.1128 CDS AJMG02000016.1 6499 7269 1 + 771 HesA/MoeB/ThiF family protein related to EC-YgdL - none -
fig|6666666.229901.peg.1129 CDS AJMG02000016.1 7369 8388 1 + 1020 Zinc ABC transporter, periplasmic-binding protein ZnuA - none -
fig|6666666.229901.peg.1130 CDS AJMG02000016.1 8516 9328 2 + 813 Outer membrane lipoprotein e (P4) / NMN 5@1-nucleotidase, extracellular (EC 3.1.3.5) NAD and NADP cofactor biosynthesis global
fig|6666666.229901.peg.1131 CDS AJMG02000016.1 9899 9408 -2 - 492 FIG001943: hypothetical protein YajQ Broadly distributed proteins not in subsystems
fig|6666666.229901.peg.1132 CDS AJMG02000016.1 10854 9910 -3 - 945 Phosphoserine phosphatase (EC 3.1.3.3) Glycine and Serine Utilization;
Serine Biosynthesis;
Serine Biosynthesis
fig|6666666.229901.peg.1133 CDS AJMG02000016.1 10930 11607 1 + 678 Lipoate-protein ligase A Lipoic acid metabolism
fig|6666666.229901.peg.1134 CDS AJMG02000016.1 11683 11564 -1 - 120 hypothetical protein - none -
fig|6666666.229901.peg.1135 CDS AJMG02000016.1 11980 11717 -1 - 264 SSU ribosomal protein S20p Ribosome SSU bacterial
fig|6666666.229901.peg.1136 CDS AJMG02000016.1 12248 13825 2 + 1578 Proposed peptidoglycan lipid II flippase MurJ Peptidoglycan lipid II flippase
fig|6666666.229901.peg.1137 CDS AJMG02000016.1 13903 14829 1 + 927 Riboflavin kinase (EC 2.7.1.26) / FMN adenylyltransferase (EC 2.7.7.2) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin, FMN and FAD metabolism in plants;
riboflavin to FAD;
riboflavin to FAD
fig|6666666.229901.peg.1138 CDS AJMG02000016.1 15043 15207 1 + 165 FIG01055344: hypothetical protein - none -
fig|6666666.229901.peg.1139 CDS AJMG02000016.1 15245 18067 2 + 2823 Isoleucyl-tRNA synthetase (EC 6.1.1.5) tRNA aminoacylation, Ile
fig|6666666.229901.peg.1140 CDS AJMG02000016.1 18147 18641 3 + 495 Lipoprotein signal peptidase (EC 3.4.23.36) Lipoprotein Biosynthesis;
Signal peptidase
fig|6666666.229901.peg.1141 CDS AJMG02000016.1 18641 19585 2 + 945 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.229901.peg.1142 CDS AJMG02000016.1 21348 20050 -3 - 1299 Cell division trigger factor (EC 5.2.1.8) Bacterial Cell Division
fig|6666666.229901.peg.1143 CDS AJMG02000016.1 22405 21512 -1 - 894 Tyrosine recombinase XerD - none -
fig|6666666.229901.peg.1144 CDS AJMG02000016.1 23568 22408 -3 - 1161 Probable 3-phenylpropionic acid transporter - none -
fig|6666666.229901.peg.1145 CDS AJMG02000016.1 23807 23568 -2 - 240 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) A Hypothetical Protein Related to Proline Metabolism;
CBSS-630.2.peg.3360;
Proline Synthesis
fig|6666666.229901.peg.1146 CDS AJMG02000016.1 24271 23813 -1 - 459 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) A Hypothetical Protein Related to Proline Metabolism;
CBSS-630.2.peg.3360;
Proline Synthesis
fig|6666666.229901.peg.1147 CDS AJMG02000016.1 24334 25239 1 + 906 DNA recombination-dependent growth factor C DNA repair, bacterial
fig|6666666.229901.peg.1148 CDS AJMG02000016.1 25704 25330 -3 - 375 opacity associated protein - none -
fig|6666666.229901.peg.1149 CDS AJMG02000016.1 27079 25766 -1 - 1314 Cell envelope opacity-associated protein A - none -
fig|6666666.229901.peg.1150 CDS AJMG02000016.1 28281 27250 -3 - 1032 Lysyl-lysine 2,3-aminomutase Translation elongation factor P lysylation
fig|6666666.229901.peg.1151 CDS AJMG02000016.1 28346 28867 2 + 522 Translation elongation factor P Translation elongation factor P lysylation;
Translation elongation factors bacterial
fig|6666666.229901.peg.1152 CDS AJMG02000016.1 29197 30573 1 + 1377 Tyrosine phenol-lyase (EC 4.1.99.2) - none -
fig|6666666.229901.peg.1153 CDS AJMG02000016.1 30735 31949 3 + 1215 Tyrosine-specific transport protein - none -
fig|6666666.229901.peg.1154 CDS AJMG02000016.1 32692 32015 -1 - 678 YheO-like PAS domain - none -
fig|6666666.229901.peg.1155 CDS AJMG02000016.1 33261 32755 -3 - 507 Arabinose efflux permease - none -
fig|6666666.229901.peg.1156 CDS AJMG02000016.1 33985 33254 -1 - 732 UDP-2,3-diacylglucosamine diphosphatase (EC 3.6.1.54) Llipid A biosynthesis cluster
fig|6666666.229901.peg.1157 CDS AJMG02000016.1 34096 34839 1 + 744 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229901.peg.1158 CDS AJMG02000016.1 34847 36259 2 + 1413 Putative cell division protein precursor - none -
fig|6666666.229901.peg.1159 CDS AJMG02000016.1 37193 36330 -2 - 864 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229901.peg.1160 CDS AJMG02000016.1 38075 37335 -2 - 741 Pyruvate formate-lyase activating enzyme (EC 1.97.1.4) Fermentations: Mixed acid
fig|6666666.229901.peg.1161 CDS AJMG02000016.1 40532 38220 -2 - 2313 Pyruvate formate-lyase (EC 2.3.1.54) Butanol Biosynthesis;
Fermentations: Mixed acid
fig|6666666.229901.peg.1162 CDS AJMG02000016.1 41452 40631 -1 - 822 Formate efflux transporter (TC 2.A.44 family) Fermentations: Mixed acid
fig|6666666.229901.peg.1163 CDS AJMG02000016.1 41795 42145 2 + 351 Bis(5@1-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17) pyrimidine conversions
fig|6666666.229901.peg.1164 CDS AJMG02000016.1 42146 42499 2 + 354 Predicted periplasmic lipoprotein - none -
fig|6666666.229901.peg.1165 CDS AJMG02000016.1 42501 43547 3 + 1047 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) Murein Hydrolases;
Recycling of Peptidoglycan Amino Sugars
fig|6666666.229901.peg.1166 CDS AJMG02000016.1 43549 44109 1 + 561 23S rRNA (Uracil-5-) -methyltransferase rumB (EC 2.1.1.-) RNA methylation
fig|6666666.229901.peg.1167 CDS AJMG02000016.1 44229 44726 3 + 498 23S rRNA (Uracil-5-) -methyltransferase rumB (EC 2.1.1.-) RNA methylation
fig|6666666.229901.peg.1168 CDS AJMG02000016.1 45791 44826 -2 - 966 6-phosphofructokinase (EC 2.7.1.11) Glycolysis and Gluconeogenesis
fig|6666666.229901.peg.1169 CDS AJMG02000016.1 46773 45853 -3 - 921 Cobalt-zinc-cadmium resistance protein Cobalt-zinc-cadmium resistance
fig|6666666.229901.peg.1170 CDS AJMG02000016.1 47339 46773 -2 - 567 FIG00696199: hypothetical protein - none -
fig|6666666.229901.peg.1171 CDS AJMG02000016.1 48120 47341 -3 - 780 UPF0246 protein YaaA - none -
fig|6666666.229901.peg.1172 CDS AJMG02000016.1 48810 48142 -3 - 669 Uracil-DNA glycosylase, family 1 DNA Repair Base Excision;
Uracil-DNA glycosylase
fig|6666666.229901.peg.1173 CDS AJMG02000016.1 49096 49479 1 + 384 Pyruvate formate-lyase (EC 2.3.1.54) Butanol Biosynthesis;
Fermentations: Mixed acid
fig|6666666.229901.peg.1174 CDS AJMG02000016.1 49643 51439 2 + 1797 Translation elongation factor LepA Heat shock dnaK gene cluster extended;
Translation elongation factors bacterial;
Universal GTPases
fig|6666666.229901.peg.1175 CDS AJMG02000016.1 51450 52472 3 + 1023 Signal peptidase I (EC 3.4.21.89) CBSS-176299.4.peg.1292;
Signal peptidase
fig|6666666.229901.peg.1176 CDS AJMG02000016.1 52479 53159 3 + 681 Ribonuclease III (EC 3.1.26.3) CBSS-176299.4.peg.1292;
RNA processing and degradation, bacterial
fig|6666666.229901.peg.1177 CDS AJMG02000016.1 53156 54064 2 + 909 GTP-binding protein Era Bacterial Cell Division;
CBSS-176299.4.peg.1292;
Glycyl-tRNA synthetase containing cluster;
Universal GTPases
fig|6666666.229901.peg.1178 CDS AJMG02000016.1 55523 54168 -2 - 1356 GTPase and tRNA-U34 5-formylation enzyme TrmE Cell Division Subsystem including YidCD;
RNA modification and chromosome partitioning cluster;
RNA modification cluster;
Universal GTPases;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229901.peg.1179 CDS AJMG02000016.1 57240 55651 -3 - 1590 Inner membrane protein translocase component YidC, long form CTP synthase (EC 6.3.4.2) cluster;
Cell Division Subsystem including YidCD;
RNA modification cluster
fig|6666666.229901.peg.1180 CDS AJMG02000016.1 57545 57282 -2 - 264 Protein YidD Cell Division Subsystem including YidCD;
RNA modification cluster
fig|6666666.229901.peg.1181 CDS AJMG02000016.1 57835 57500 -1 - 336 Ribonuclease P protein component (EC 3.1.26.5) Cell Division Subsystem including YidCD;
RNA modification cluster;
tRNA processing
fig|6666666.229901.peg.1182 CDS AJMG02000016.1 58015 57881 -1 - 135 LSU ribosomal protein L34p Cell Division Subsystem including YidCD;
RNA modification cluster;
Ribosome LSU bacterial
fig|6666666.229901.peg.1183 CDS AJMG02000016.1 58433 59794 2 + 1362 Chromosomal replication initiator protein DnaA Cell Division Subsystem including YidCD;
DNA replication cluster 1
fig|6666666.229901.peg.1184 CDS AJMG02000016.1 59802 60905 3 + 1104 DNA polymerase III beta subunit (EC 2.7.7.7) Cell Division Subsystem including YidCD;
DNA replication cluster 1
fig|6666666.229901.peg.1185 CDS AJMG02000016.1 60909 61985 3 + 1077 DNA recombination and repair protein RecF Cell Division Subsystem including YidCD;
DNA repair, bacterial RecFOR pathway;
DNA replication cluster 1
fig|6666666.229901.peg.1186 CDS AJMG02000016.1 62787 62032 -3 - 756 Ubiquinone/menaquinone biosynthesis methyltransferase UbiE (EC 2.1.1.-) Menaquinone and Phylloquinone Biosynthesis;
Ubiquinone Biosynthesis
fig|6666666.229901.peg.1187 CDS AJMG02000016.1 62975 63550 2 + 576 Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1) Oxidative stress;
Protection from Reactive Oxygen Species
fig|6666666.229901.peg.1188 CDS AJMG02000018.1 486 235 -3 - 252 Transcriptional regulator, XRE family - none -
fig|6666666.229901.peg.1189 CDS AJMG02000018.1 637 2274 1 + 1638 NAD-dependent malic enzyme (EC 1.1.1.38) Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229901.peg.1190 CDS AJMG02000018.1 3693 2494 -3 - 1200 NAD(FAD)-utilizing dehydrogenases - none -
fig|6666666.229901.peg.1191 CDS AJMG02000018.1 4739 3690 -2 - 1050 Cytochrome c-type heme lyase subunit nrfF, nitrite reductase complex assembly - none -
fig|6666666.229901.peg.1192 CDS AJMG02000018.1 5266 4736 -1 - 531 Putative thiol:disulfide oxidoreductase, nitrite reductase complex assembly - none -
fig|6666666.229901.peg.1193 CDS AJMG02000018.1 7169 5259 -2 - 1911 Cytochrome c-type heme lyase subunit nrfE, nitrite reductase complex assembly - none -
fig|6666666.229901.peg.1194 CDS AJMG02000018.1 7191 7559 3 + 369 hypothetical protein - none -
fig|6666666.229901.peg.1195 CDS AJMG02000018.1 8721 7756 -3 - 966 NrfD protein - none -
fig|6666666.229901.peg.1196 CDS AJMG02000018.1 9395 8718 -2 - 678 NrfC protein - none -
fig|6666666.229901.peg.1197 CDS AJMG02000018.1 10057 9392 -1 - 666 Cytochrome c-type protein NrfB precursor - none -
fig|6666666.229901.peg.1198 CDS AJMG02000018.1 11654 10131 -2 - 1524 Cytochrome c552 precursor (EC 1.7.2.2) Soluble cytochromes and functionally related electron carriers
fig|6666666.229901.peg.1199 CDS AJMG02000018.1 12521 12231 -2 - 291 hypothetical protein - none -
fig|6666666.229901.peg.1200 CDS AJMG02000018.1 13087 12539 -1 - 549 Parvulin-like peptidyl-prolyl isomerase - none -
fig|6666666.229901.peg.1201 CDS AJMG02000018.1 14220 13297 -3 - 924 Cytochrome c heme lyase subunit CcmH Biogenesis of c-type cytochromes;
Copper homeostasis
fig|6666666.229901.peg.1202 CDS AJMG02000018.1 14672 14220 -2 - 453 Cytochrome c heme lyase subunit CcmL Biogenesis of c-type cytochromes
fig|6666666.229901.peg.1203 CDS AJMG02000018.1 15316 14771 -1 - 546 Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase Biogenesis of c-type cytochromes;
Periplasmic disulfide interchange
fig|6666666.229901.peg.1204 CDS AJMG02000019.1 922 443 -1 - 480 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229901.peg.1205 CDS AJMG02000019.1 2834 1461 -2 - 1374 DNA repair protein RadA DNA repair, bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229901.peg.1206 CDS AJMG02000019.1 3991 2837 -1 - 1155 Adenylate cyclase (EC 4.6.1.1) cAMP signaling in bacteria
fig|6666666.229901.peg.1207 CDS AJMG02000019.1 4156 4836 1 + 681 Phosphate transport regulator (distant homolog of PhoU) Phosphate metabolism
fig|6666666.229901.peg.1208 CDS AJMG02000019.1 4862 6127 2 + 1266 Probable low-affinity inorganic phosphate transporter Phosphate metabolism
fig|6666666.229901.peg.1209 CDS AJMG02000019.1 6196 6807 1 + 612 SH3 domain protein - none -
fig|6666666.229901.peg.1210 CDS AJMG02000019.1 6807 8111 3 + 1305 tRNA nucleotidyltransferase (EC 2.7.7.21) (EC 2.7.7.25) Polyadenylation bacterial;
tRNA nucleotidyltransferase
fig|6666666.229901.peg.1211 CDS AJMG02000019.1 8146 8769 1 + 624 Outer membrane lipoprotein LolB precursor - none -
fig|6666666.229901.peg.1212 CDS AJMG02000019.1 8769 9680 3 + 912 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148) A Gammaproteobacteria Cluster Relating to Translation;
Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.229901.peg.1213 CDS AJMG02000019.1 9721 10671 1 + 951 Ribose-phosphate pyrophosphokinase (EC 2.7.6.1) A Gammaproteobacteria Cluster Relating to Translation;
Pentose phosphate pathway;
Transcription repair cluster
fig|6666666.229901.peg.1214 CDS AJMG02000019.1 10848 10994 3 + 147 hypothetical protein - none -
fig|6666666.229901.peg.1215 CDS AJMG02000019.1 11300 12445 2 + 1146 L-lactate dehydrogenase (EC 1.1.2.3) Lactate utilization;
Respiratory dehydrogenases 1
fig|6666666.229901.peg.1216 CDS AJMG02000019.1 12688 14277 1 + 1590 L-lactate permease Lactate utilization
fig|6666666.229901.peg.1217 CDS AJMG02000019.1 14764 14432 -1 - 333 UPF0265 protein YeeX Broadly distributed proteins not in subsystems
fig|6666666.229901.peg.1218 CDS AJMG02000019.1 14789 14905 2 + 117 hypothetical protein - none -
fig|6666666.229901.peg.1219 CDS AJMG02000019.1 14964 16046 3 + 1083 Phosphoserine aminotransferase (EC 2.6.1.52) Glycine and Serine Utilization;
Pyridoxin (Vitamin B6) Biosynthesis;
Serine Biosynthesis
fig|6666666.229901.peg.1220 CDS AJMG02000019.1 16073 17218 2 + 1146 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) @ Histidinol-phosphate aminotransferase (EC 2.6.1.9) Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229901.peg.1221 CDS AJMG02000019.1 17229 18560 3 + 1332 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229901.peg.1222 CDS AJMG02000019.1 19106 18639 -2 - 468 Ribonuclease HI (EC 3.1.26.4) CBSS-228410.1.peg.134;
CBSS-342610.3.peg.1536;
Ribonuclease H
fig|6666666.229901.peg.1223 CDS AJMG02000019.1 19174 19935 1 + 762 DNA polymerase III epsilon subunit (EC 2.7.7.7) CBSS-228410.1.peg.134;
CBSS-342610.3.peg.1536
fig|6666666.229901.peg.1224 CDS AJMG02000019.1 20383 20637 1 + 255 RelB/StbD replicon stabilization protein (antitoxin to RelE/StbE) Toxin-antitoxin replicon stabilization systems
fig|6666666.229901.peg.1225 CDS AJMG02000019.1 20627 20917 2 + 291 StbE replicon stabilization toxin - none -
fig|6666666.229901.peg.1226 CDS AJMG02000019.1 21313 20975 -1 - 339 conserved hypothetical protein - none -
fig|6666666.229901.peg.1227 CDS AJMG02000019.1 21741 22106 3 + 366 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) Ammonia assimilation;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229901.peg.1228 CDS AJMG02000019.1 22277 23665 2 + 1389 Putative protease - none -
fig|6666666.229901.peg.1229 CDS AJMG02000019.1 23962 25053 1 + 1092 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) CBSS-211586.1.peg.2832;
Queuosine-Archaeosine Biosynthesis;
Scaffold proteins for [4Fe-4S] cluster assembly (MRP family);
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229901.peg.1230 CDS AJMG02000019.1 26233 25097 -1 - 1137 Periplasmic aromatic amino acid aminotransferase beta precursor (EC 2.6.1.57) Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229901.peg.1231 CDS AJMG02000019.1 26706 27857 3 + 1152 tRNA-guanine transglycosylase (EC 2.4.2.29) CBSS-211586.1.peg.2832;
Queuosine-Archaeosine Biosynthesis;
Scaffold proteins for [4Fe-4S] cluster assembly (MRP family);
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229901.peg.1232 CDS AJMG02000019.1 28149 28448 3 + 300 Preprotein translocase subunit YajC (TC 3.A.5.1.1) CBSS-211586.1.peg.2832
fig|6666666.229901.peg.1233 CDS AJMG02000019.1 28512 30329 3 + 1818 Protein-export membrane protein SecD (TC 3.A.5.1.1) CBSS-211586.1.peg.2832
fig|6666666.229901.peg.1234 CDS AJMG02000019.1 30346 31311 1 + 966 Protein-export membrane protein SecF (TC 3.A.5.1.1) CBSS-211586.1.peg.2832
fig|6666666.229901.peg.1235 CDS AJMG02000019.1 31531 34158 1 + 2628 Iron siderophore receptor protein - none -
fig|6666666.229901.peg.1236 CDS AJMG02000019.1 34405 34229 -1 - 177 hypothetical protein - none -
fig|6666666.229901.peg.1237 CDS AJMG02000019.1 34508 37129 2 + 2622 Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) 5-FCL-like protein;
Butanol Biosynthesis;
Butanol Biosynthesis;
Fermentations: Lactate;
Fermentations: Mixed acid;
Fermentations: Mixed acid;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229901.peg.1238 CDS AJMG02000019.1 38165 37212 -2 - 954 Inositol transport system permease protein - none -
fig|6666666.229901.peg.1239 CDS AJMG02000019.1 38344 38216 -1 - 129 Inositol transport system ATP-binding protein - none -
fig|6666666.229901.peg.1240 CDS AJMG02000019.1 38343 39212 3 + 870 Myo-inositol 2-dehydrogenase 1 (EC 1.1.1.18) - none -
fig|6666666.229901.peg.1241 CDS AJMG02000019.1 39828 39316 -3 - 513 Mannitol operon repressor Mannitol Utilization
fig|6666666.229901.peg.1242 CDS AJMG02000019.1 41054 39906 -2 - 1149 Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17) Mannitol Utilization
fig|6666666.229901.peg.1243 CDS AJMG02000019.1 43012 41132 -1 - 1881 PTS system, mannitol-specific IIC component (EC 2.7.1.69) / PTS system, mannitol-specific IIB component (EC 2.7.1.69) / PTS system, mannitol-specific IIA component (EC 2.7.1.69) Mannitol Utilization;
Mannitol Utilization;
Mannitol Utilization
fig|6666666.229901.peg.1244 CDS AJMG02000019.1 44759 43326 -2 - 1434 Microcin H47 secretion protein - none -
fig|6666666.229901.peg.1245 CDS AJMG02000019.1 46897 44774 -1 - 2124 Methionine ABC transporter ATP-binding protein Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229901.peg.1246 CDS AJMG02000019.1 50133 46966 -3 - 3168 bifunctional hemolysin-adenylate cyclase precursor cAMP signaling in bacteria
fig|6666666.229901.peg.1247 CDS AJMG02000019.1 50652 50146 -3 - 507 RTX toxin activating lysine-acyltransferase (EC 2.3.1.-) - none -
fig|6666666.229901.peg.1248 CDS AJMG02000019.1 53021 51759 -2 - 1263 Serine hydroxymethyltransferase (EC 2.1.2.1) 5-FCL-like protein;
Glycine Biosynthesis;
Glycine and Serine Utilization;
Serine Biosynthesis;
YrdC-YciO-Sua5 protein family
fig|6666666.229901.peg.1249 CDS AJMG02000019.1 53698 53156 -1 - 543 hypothetical protein - none -
fig|6666666.229901.peg.1250 CDS AJMG02000019.1 54228 54079 -3 - 150 hypothetical protein - none -
fig|6666666.229901.peg.1251 CDS AJMG02000019.1 55319 54315 -2 - 1005 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) RNA methylation
fig|6666666.229901.peg.1252 CDS AJMG02000019.1 55375 55824 1 + 450 DNA polymerase III psi subunit (EC 2.7.7.7) - none -
fig|6666666.229901.peg.1253 CDS AJMG02000019.1 55834 56277 1 + 444 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Ribosome biogenesis bacterial;
YrdC-YciO-Sua5 protein family
fig|6666666.229901.peg.1254 CDS AJMG02000019.1 59695 56279 -1 - 3417 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) DNA repair, bacterial RecBCD pathway
fig|6666666.229901.peg.1255 CDS AJMG02000019.1 60009 59707 -3 - 303 FIG00696353: hypothetical protein - none -
fig|6666666.229901.peg.1256 CDS AJMG02000019.1 60679 59984 -1 - 696 FIG00696574: hypothetical protein - none -
fig|6666666.229901.peg.1257 CDS AJMG02000019.1 61392 60676 -3 - 717 Type II secretory pathway, component PulJ - none -
fig|6666666.229901.peg.1258 CDS AJMG02000019.1 62023 61406 -1 - 618 Type II secretory pathway, pseudopilin PulG - none -
fig|6666666.229901.peg.1259 CDS AJMG02000019.1 63099 62632 -3 - 468 18K peptidoglycan-associated outer membrane lipoprotein; Peptidoglycan-associated lipoprotein precursor; Outer membrane protein P6; OmpA/MotB precursor Ton and Tol transport systems
fig|6666666.229901.peg.1260 CDS AJMG02000019.1 64394 63114 -2 - 1281 tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins Ton and Tol transport systems
fig|6666666.229901.peg.1261 CDS AJMG02000019.1 65436 64429 -3 - 1008 TolA protein Ton and Tol transport systems
fig|6666666.229901.peg.1262 CDS AJMG02000019.1 106643 106221 -2 - 423 Tol biopolymer transport system, TolR protein Ton and Tol transport systems
fig|6666666.229901.peg.1263 CDS AJMG02000019.1 107418 106729 -3 - 690 MotA/TolQ/ExbB proton channel family protein Ton and Tol transport systems
fig|6666666.229901.peg.1264 CDS AJMG02000019.1 107852 107448 -2 - 405 4-hydroxybenzoyl-CoA thioesterase family active site Ton and Tol transport systems
fig|6666666.229901.peg.1265 CDS AJMG02000019.1 107917 108036 1 + 120 hypothetical protein - none -
fig|6666666.229901.peg.1266 CDS AJMG02000019.1 109497 108361 -3 - 1137 Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229901.peg.1267 CDS AJMG02000019.1 110993 109512 -2 - 1482 Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229901.peg.1268 CDS AJMG02000019.1 111529 111840 1 + 312 Chromosome segregation ATPases - none -
fig|6666666.229901.peg.1269 CDS AJMG02000019.1 112907 111894 -2 - 1014 Holliday junction DNA helicase RuvB RuvABC plus a hypothetical
fig|6666666.229901.peg.1270 CDS AJMG02000019.1 113536 112922 -1 - 615 Holliday junction DNA helicase RuvA RuvABC plus a hypothetical
fig|6666666.229901.peg.1271 CDS AJMG02000019.1 114172 113600 -1 - 573 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) RuvABC plus a hypothetical
fig|6666666.229901.peg.1272 CDS AJMG02000019.1 114638 114228 -2 - 411 excinuclease ABC subunit A - none -
fig|6666666.229901.peg.1273 CDS AJMG02000019.1 115390 114650 -1 - 741 FIG000859: hypothetical protein YebC Riboflavin, FMN and FAD metabolism in plants;
RuvABC plus a hypothetical
fig|6666666.229901.peg.1274 CDS AJMG02000019.1 115795 115424 -1 - 372 Dihydroneopterin triphosphate pyrophosphohydrolase type 2 (nudB) Folate Biosynthesis
fig|6666666.229901.peg.1275 CDS AJMG02000019.1 117244 115976 -1 - 1269 Mn2+ and Fe2+ transporters of the NRAMP family - none -
fig|6666666.229901.peg.1276 CDS AJMG02000019.1 117462 117602 3 + 141 hypothetical protein - none -
fig|6666666.229901.peg.1277 CDS AJMG02000019.1 119414 117636 -2 - 1779 Aspartyl-tRNA synthetase (EC 6.1.1.12) tRNA aminoacylation, Asp and Asn
fig|6666666.229901.peg.1278 CDS AJMG02000019.1 120221 120946 2 + 726 tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229901.peg.1279 CDS AJMG02000019.1 121373 121233 -2 - 141 transposase - none -
fig|6666666.229901.peg.1280 CDS AJMG02000019.1 124119 121642 -3 - 2478 Type I restriction-modification system, DNA-methyltransferase subunit M (EC 2.1.1.72) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229901.peg.1281 CDS AJMG02000019.1 124654 124322 -1 - 333 hypothetical protein - none -
fig|6666666.229901.peg.1282 CDS AJMG02000019.1 124882 125862 1 + 981 Mobile element protein - none -
fig|6666666.229901.peg.1283 CDS AJMG02000019.1 125862 126020 3 + 159 ATPase involved in DNA repair - none -
fig|6666666.229901.peg.1284 CDS AJMG02000019.1 129010 126443 -1 - 2568 FIG00362583: hypothetical protein - none -
fig|6666666.229901.peg.1285 CDS AJMG02000019.1 130484 129153 -2 - 1332 Glycerol-3-phosphate transporter - none -
fig|6666666.229901.peg.1286 CDS AJMG02000019.1 130885 132837 1 + 1953 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229901.peg.1287 CDS AJMG02000019.1 132996 133403 3 + 408 Lactoylglutathione lyase (EC 4.4.1.5) Glutathione: Non-redox reactions;
Methylglyoxal Metabolism
fig|6666666.229901.peg.1288 CDS AJMG02000019.1 133490 134143 2 + 654 Ribonuclease T (EC 3.1.13.-) tRNA processing
fig|6666666.229901.peg.1289 CDS AJMG02000019.1 134495 135847 2 + 1353 Histidine permease YuiF - none -
fig|6666666.229901.peg.1290 CDS AJMG02000019.1 135911 136477 2 + 567 Primosomal replication protein N@1@1 - none -
fig|6666666.229901.peg.1291 CDS AJMG02000019.1 137958 136534 -3 - 1425 tRNA-i(6)A37 methylthiotransferase Methylthiotransferases;
tRNA-methylthiotransferase containing cluster;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229901.peg.1292 CDS AJMG02000019.1 138066 138194 3 + 129 hypothetical protein - none -
fig|6666666.229901.peg.1293 CDS AJMG02000019.1 138302 138445 2 + 144 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-) CBSS-87626.3.peg.3639;
Ubiquinone Biosynthesis
fig|6666666.229901.peg.1294 CDS AJMG02000019.1 139890 139159 -3 - 732 FIG053235: Diacylglucosamine hydrolase like Llipid A biosynthesis cluster
fig|6666666.229901.peg.1295 CDS AJMG02000019.1 140863 139892 -1 - 972 Octaprenyl diphosphate synthase (EC 2.5.1.90) Isoprenoinds for Quinones;
Polyprenyl Diphosphate Biosynthesis
fig|6666666.229901.peg.1296 CDS AJMG02000019.1 141129 141440 3 + 312 LSU ribosomal protein L21p CBSS-176279.3.peg.868;
Ribosome LSU bacterial
fig|6666666.229901.peg.1297 CDS AJMG02000019.1 141461 141718 2 + 258 LSU ribosomal protein L27p CBSS-176279.3.peg.868;
Ribosome LSU bacterial
fig|6666666.229901.peg.1298 CDS AJMG02000019.1 141790 142722 1 + 933 Permeases of the drug/metabolite transporter (DMT) superfamily - none -
fig|6666666.229901.peg.1299 CDS AJMG02000019.1 142800 143717 3 + 918 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229901.peg.1300 CDS AJMG02000019.1 143754 144929 3 + 1176 GTP-binding protein Obg CBSS-176279.3.peg.868;
Universal GTPases
fig|6666666.229901.peg.1301 CDS AJMG02000019.1 145041 144913 -3 - 129 hypothetical protein - none -
fig|6666666.229901.peg.1302 CDS AJMG02000019.1 145475 144993 -2 - 483 tmRNA-binding protein SmpB Heat shock dnaK gene cluster extended;
Translation termination factors bacterial
fig|6666666.229901.peg.1303 CDS AJMG02000019.1 145820 145683 -2 - 138 hypothetical protein - none -
fig|6666666.229901.peg.1304 CDS AJMG02000019.1 145843 146691 1 + 849 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229901.peg.1305 CDS AJMG02000019.1 146768 147466 2 + 699 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229901.peg.1306 CDS AJMG02000019.1 147567 148487 3 + 921 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229901.peg.1307 CDS AJMG02000019.1 148741 149436 1 + 696 Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229901.peg.1308 CDS AJMG02000019.1 149446 150429 1 + 984 Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229901.peg.1309 CDS AJMG02000019.1 150426 151424 3 + 999 Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229901.peg.1310 CDS AJMG02000019.1 152238 151531 -3 - 708 Aerobic respiration control protein arcA - none -
fig|6666666.229901.peg.1311 CDS AJMG02000019.1 152916 152650 -3 - 267 LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-independent Ribosome LSU bacterial;
Ribosome LSU bacterial
fig|6666666.229901.peg.1312 CDS AJMG02000019.1 153697 153128 -1 - 570 Lysine decarboxylase family - none -
fig|6666666.229901.peg.1313 CDS AJMG02000019.1 153840 155630 3 + 1791 Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8) Biogenesis of c-type cytochromes;
Periplasmic disulfide interchange
fig|6666666.229901.peg.1314 CDS AJMG02000019.1 155710 156099 1 + 390 INTEGRAL MEMBRANE PROTEIN (Rhomboid family) - none -
fig|6666666.229901.peg.1315 CDS AJMG02000019.1 159379 156497 -1 - 2883 Ribonuclease E (EC 3.1.26.12) RNA processing and degradation, bacterial;
Ribosome biogenesis bacterial
fig|6666666.229901.peg.1316 CDS AJMG02000019.1 159622 159744 1 + 123 hypothetical protein - none -
fig|6666666.229901.peg.1317 CDS AJMG02000019.1 159854 160813 2 + 960 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) RNA pseudouridine syntheses;
Ribosome biogenesis bacterial
fig|6666666.229901.peg.1318 CDS AJMG02000019.1 161227 161012 -1 - 216 Thioredoxin - none -
fig|6666666.229901.peg.1319 CDS AJMG02000019.1 162430 161435 -1 - 996 D-lactate dehydrogenase (EC 1.1.1.28) Fermentations: Lactate;
Fermentations: Mixed acid
fig|6666666.229901.peg.1320 CDS AJMG02000019.1 163563 162454 -3 - 1110 Cystathionine gamma-synthase (EC 2.5.1.48) Methionine Biosynthesis
fig|6666666.229901.peg.1321 CDS AJMG02000020.1 952 134 -1 - 819 Peptide transport system ATP-binding protein SapF - none -
fig|6666666.229901.peg.1322 CDS AJMG02000020.1 2008 956 -1 - 1053 Peptide transport system ATP-binding protein SapD - none -
fig|6666666.229901.peg.1323 CDS AJMG02000020.1 2903 2016 -2 - 888 Peptide transport system permease protein SapC - none -
fig|6666666.229901.peg.1324 CDS AJMG02000020.1 3858 2893 -3 - 966 Peptide transport system permease protein SapB - none -
fig|6666666.229901.peg.1325 CDS AJMG02000020.1 5489 3858 -2 - 1632 Peptide transport periplasmic protein sapA (TC 3.A.1.5.5) - none -
fig|6666666.229901.peg.1326 CDS AJMG02000020.1 5754 7169 3 + 1416 Conserved protein YcjX with nucleoside triphosphate hydrolase domain A conserved operon linked to TyrR and possibly involved in virulence
fig|6666666.229901.peg.1327 CDS AJMG02000020.1 7182 8261 3 + 1080 Membrane protein YcjF A conserved operon linked to TyrR and possibly involved in virulence
fig|6666666.229901.peg.1328 CDS AJMG02000020.1 8345 9304 2 + 960 Transcriptional repressor protein TyrR Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate);
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229901.peg.1329 CDS AJMG02000020.1 9435 9301 -3 - 135 hypothetical protein - none -
fig|6666666.229901.peg.1330 CDS AJMG02000020.1 9669 9520 -3 - 150 GTP-binding protein HflX Hfl operon;
Universal GTPases
fig|6666666.229901.peg.1331 CDS AJMG02000020.1 9980 9684 -2 - 297 RNA-binding protein Hfq Hfl operon;
Polyadenylation bacterial
fig|6666666.229901.peg.1332 CDS AJMG02000020.1 11043 10099 -3 - 945 tRNA dimethylallyltransferase (EC 2.5.1.75) tRNA modification Bacteria;
tRNA processing
fig|6666666.229901.peg.1333 CDS AJMG02000020.1 12908 11058 -2 - 1851 DNA mismatch repair protein MutL DNA repair, bacterial MutL-MutS system
fig|6666666.229901.peg.1334 CDS AJMG02000020.1 14395 12908 -1 - 1488 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) Murein Hydrolases;
Recycling of Peptidoglycan Amino Acids
fig|6666666.229901.peg.1335 CDS AJMG02000020.1 14844 14392 -3 - 453 TsaE protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA Scaffold proteins for [4Fe-4S] cluster assembly (MRP family);
YjeE;
YrdC-YciO-Sua5 protein family
fig|6666666.229901.peg.1336 CDS AJMG02000020.1 14861 14989 2 + 129 hypothetical protein - none -
fig|6666666.229901.peg.1337 CDS AJMG02000020.1 16835 15042 -2 - 1794 Mlr4739 protein - none -
fig|6666666.229901.peg.1338 CDS AJMG02000020.1 18143 17223 -2 - 921 RfbJ protein - none -
fig|6666666.229901.peg.1339 CDS AJMG02000020.1 19663 18155 -1 - 1509 conserved domain protein - none -
fig|6666666.229901.peg.1340 CDS AJMG02000020.1 20267 19650 -2 - 618 Glycerate kinase (EC 2.7.1.31) D-galactarate, D-glucarate and D-glycerate catabolism;
D-galactarate, D-glucarate and D-glycerate catabolism - gjo;
Glycerate metabolism;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Glycine and Serine Utilization
fig|6666666.229901.peg.1341 CDS AJMG02000020.1 21810 20296 -3 - 1515 Dca - none -
fig|6666666.229901.peg.1342 CDS AJMG02000020.1 22877 22329 -2 - 549 3@1-to-5@1 oligoribonuclease (orn) RNA processing and degradation, bacterial
fig|6666666.229901.peg.1343 CDS AJMG02000020.1 22948 23988 1 + 1041 Ribosome small subunit-stimulated GTPase EngC Universal GTPases
fig|6666666.229901.peg.1344 CDS AJMG02000020.1 24209 24466 2 + 258 Phosphotransferase system, phosphocarrier protein HPr Fructose utilization;
Mannitol Utilization
fig|6666666.229901.peg.1345 CDS AJMG02000020.1 24580 26307 1 + 1728 Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) Fructose utilization;
Mannitol Utilization
fig|6666666.229901.peg.1346 CDS AJMG02000020.1 26368 26868 1 + 501 PTS system, glucose-specific IIA component - none -
fig|6666666.229901.peg.1347 CDS AJMG02000020.1 29033 26994 -2 - 2040 Oligopeptidase A (EC 3.4.24.70) Protein degradation
fig|6666666.229901.peg.1348 CDS AJMG02000020.1 29175 29540 3 + 366 FIG039061: hypothetical protein related to heme utilization - none -
fig|6666666.229901.peg.1349 CDS AJMG02000020.1 29596 31134 1 + 1539 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229901.peg.1350 CDS AJMG02000020.1 31996 31409 -1 - 588 Aminodeoxychorismate lyase (EC 4.1.3.38) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Folate Biosynthesis;
Tryptophan synthesis
fig|6666666.229901.peg.1351 CDS AJMG02000020.1 32973 31999 -3 - 975 Para-aminobenzoate synthase, aminase component (EC 2.6.1.85) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Folate Biosynthesis;
Tryptophan synthesis
fig|6666666.229901.peg.1352 CDS AJMG02000020.1 33075 33641 3 + 567 Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Folate Biosynthesis;
Tryptophan synthesis
fig|6666666.229901.peg.1353 CDS AJMG02000020.1 33797 34741 2 + 945 Hydroxypyruvate reductase (EC 1.1.1.81) Glycerate metabolism;
Glycolate, glyoxylate interconversions
fig|6666666.229901.peg.1354 CDS AJMG02000020.1 35284 36468 1 + 1185 Lipoprotein releasing system transmembrane protein LolC Lipopolysaccharide assembly;
Lipoprotein sorting system
fig|6666666.229901.peg.1355 CDS AJMG02000020.1 36483 37169 3 + 687 Lipoprotein releasing system ATP-binding protein LolD Lipopolysaccharide assembly;
Lipoprotein sorting system
fig|6666666.229901.peg.1356 CDS AJMG02000020.1 37387 38391 1 + 1005 Lipoprotein releasing system transmembrane protein LolE Lipopolysaccharide assembly;
Lipoprotein sorting system
fig|6666666.229901.peg.1357 CDS AJMG02000020.1 38492 39571 2 + 1080 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha (EC 2.5.1.54) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229901.peg.1358 CDS AJMG02000020.1 39702 39580 -3 - 123 hypothetical protein - none -
fig|6666666.229901.peg.1359 CDS AJMG02000020.1 39717 41123 3 + 1407 Replicative DNA helicase (EC 3.6.1.-) - none -
fig|6666666.229901.peg.1360 CDS AJMG02000020.1 41147 42229 2 + 1083 Alanine racemase (EC 5.1.1.1) ## biosynthetic Alanine biosynthesis;
Pyruvate Alanine Serine Interconversions
fig|6666666.229901.peg.1361 CDS AJMG02000020.1 42245 43894 2 + 1650 Glucose-6-phosphate isomerase (EC 5.3.1.9) Glycolysis and Gluconeogenesis
fig|6666666.229901.peg.1362 CDS AJMG02000020.1 44512 44937 1 + 426 Transcription termination protein NusB Riboflavin synthesis cluster;
Transcription factors bacterial
fig|6666666.229901.peg.1363 CDS AJMG02000020.1 44956 45939 1 + 984 Thiamine-monophosphate kinase (EC 2.7.4.16) 5-FCL-like protein;
Riboflavin synthesis cluster;
Thiamin biosynthesis
fig|6666666.229901.peg.1364 CDS AJMG02000020.1 45949 46440 1 + 492 Phosphatidylglycerophosphatase A (EC 3.1.3.27) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Riboflavin synthesis cluster
fig|6666666.229901.peg.1365 CDS AJMG02000020.1 46449 47069 3 + 621 L-lysine permease - none -
fig|6666666.229901.peg.1366 CDS AJMG02000020.1 47091 47903 3 + 813 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229901.peg.1367 CDS AJMG02000020.1 47931 48062 3 + 132 hypothetical protein - none -
fig|6666666.229901.peg.1368 CDS AJMG02000020.1 48263 48015 -2 - 249 Ferredoxin Soluble cytochromes and functionally related electron carriers
fig|6666666.229901.peg.1369 CDS AJMG02000020.1 48600 48331 -3 - 270 hypothetical protein - none -
fig|6666666.229901.peg.1370 CDS AJMG02000020.1 49752 48622 -3 - 1131 Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) Ribonucleotide reduction
fig|6666666.229901.peg.1371 CDS AJMG02000020.1 50610 49954 -3 - 657 hypothetical protein - none -
fig|6666666.229901.peg.1372 CDS AJMG02000020.1 52934 50664 -2 - 2271 Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) Ribonucleotide reduction
fig|6666666.229901.peg.1373 CDS AJMG02000020.1 54709 53237 -1 - 1473 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229901.peg.1374 CDS AJMG02000020.1 54847 54969 1 + 123 hypothetical protein - none -
fig|6666666.229901.peg.1375 CDS AJMG02000020.1 54980 56008 2 + 1029 Ferric iron ABC transporter, iron-binding protein Iron acquisition in Streptococcus
fig|6666666.229901.peg.1376 CDS AJMG02000020.1 56060 58090 2 + 2031 Ferric iron ABC transporter, permease protein Iron acquisition in Streptococcus
fig|6666666.229901.peg.1377 CDS AJMG02000020.1 58074 59114 3 + 1041 Sulfate and thiosulfate import ATP-binding protein CysA (EC 3.6.3.25) Cysteine Biosynthesis;
Uptake of selenate and selenite
fig|6666666.229901.peg.1378 CDS AJMG02000020.1 61222 59171 -1 - 2052 Periplasmic alpha-amylase (EC 3.2.1.1) Maltose and Maltodextrin Utilization
fig|6666666.229901.peg.1379 CDS AJMG02000020.1 62207 61317 -2 - 891 Maltose/maltodextrin ABC transporter, permease protein MalG Maltose and Maltodextrin Utilization
fig|6666666.229901.peg.1380 CDS AJMG02000020.1 63773 62229 -2 - 1545 Maltose/maltodextrin ABC transporter, permease protein MalF Maltose and Maltodextrin Utilization
fig|6666666.229901.peg.1381 CDS AJMG02000020.1 63928 63797 -1 - 132 hypothetical protein - none -
fig|6666666.229901.peg.1382 CDS AJMG02000020.1 65087 63897 -2 - 1191 Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein MalE Alpha-Amylase locus in Streptocococcus;
Bacterial Chemotaxis;
Maltose and Maltodextrin Utilization
fig|6666666.229901.peg.1383 CDS AJMG02000020.1 65544 66662 3 + 1119 Maltose/maltodextrin transport ATP-binding protein MalK (EC 3.6.3.19) Maltose and Maltodextrin Utilization
fig|6666666.229901.peg.1384 CDS AJMG02000020.1 66739 68022 1 + 1284 Maltoporin (maltose/maltodextrin high-affinity receptor, phage lambda receptor protein) Maltose and Maltodextrin Utilization
fig|6666666.229901.peg.1385 CDS AJMG02000020.1 68108 69007 2 + 900 Maltose operon periplasmic protein MalM Maltose and Maltodextrin Utilization
fig|6666666.229901.peg.1386 CDS AJMG02000020.1 69078 69209 3 + 132 hypothetical protein - none -
fig|6666666.229901.peg.1387 CDS AJMG02000020.1 70115 69384 -2 - 732 Molybdopterin biosynthesis protein MoeB Molybdenum cofactor biosynthesis
fig|6666666.229901.peg.1388 CDS AJMG02000020.1 71345 70131 -2 - 1215 Molybdopterin biosynthesis protein MoeA Molybdenum cofactor biosynthesis
fig|6666666.229901.peg.1389 CDS AJMG02000020.1 71474 72130 2 + 657 GTP cyclohydrolase I (EC 3.5.4.16) type 1 Folate Biosynthesis;
Folate biosynthesis cluster;
Molybdenum cofactor biosynthesis;
Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229901.peg.1390 CDS AJMG02000020.1 73671 72229 -3 - 1443 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) Metallocarboxypeptidases (EC 3.4.17.-);
Murein Hydrolases;
Peptidoglycan Biosynthesis
fig|6666666.229901.peg.1391 CDS AJMG02000020.1 73739 74308 2 + 570 Transcription elongation factor GreA Transcription factors bacterial
fig|6666666.229901.peg.1392 CDS AJMG02000020.1 74685 74383 -3 - 303 FIG004454: RNA binding protein - none -
fig|6666666.229901.peg.1393 CDS AJMG02000020.1 74853 75164 3 + 312 Phage-related protein - none -
fig|6666666.229901.peg.1394 CDS AJMG02000020.1 75149 75445 2 + 297 FIG045511: hypothetical antitoxin (to FIG022160: hypothetical toxin) - none -
fig|6666666.229901.peg.1395 CDS AJMG02000020.1 76092 75478 -3 - 615 Riboflavin synthase eubacterial/eukaryotic (EC 2.5.1.9) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster;
riboflavin to FAD
fig|6666666.229901.peg.1396 CDS AJMG02000020.1 76119 77516 3 + 1398 Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps Multidrug Resistance Efflux Pumps;
Riboflavin, FMN and FAD metabolism in plants
fig|6666666.229901.peg.1397 CDS AJMG02000020.1 78300 77821 -3 - 480 Cys-tRNA(Pro) deacylase YbaK tRNA aminoacylation, Pro
fig|6666666.229901.peg.1398 CDS AJMG02000020.1 78361 79332 1 + 972 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch;
Threonine and Homoserine Biosynthesis
fig|6666666.229901.peg.1399 CDS AJMG02000020.1 79388 79711 2 + 324 capsular polysaccharide biosynthesis protein, putative - none -
fig|6666666.229901.peg.1400 CDS AJMG02000020.1 80930 81232 2 + 303 Major pilus subunit of type IV secretion complex, VirB2 - none -
fig|6666666.229901.peg.1401 CDS AJMG02000021.1 130 714 1 + 585 Hydrolase, haloacid dehalogenase-like family - none -
fig|6666666.229901.peg.1402 CDS AJMG02000021.1 1256 1405 2 + 150 Integral membrane protein - none -
fig|6666666.229901.peg.1403 CDS AJMG02000021.1 1452 1649 3 + 198 hypothetical protein - none -
fig|6666666.229901.peg.1404 CDS AJMG02000021.1 2658 1621 -3 - 1038 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) LOS core oligosaccharide biosynthesis
fig|6666666.229901.peg.1405 CDS AJMG02000021.1 4258 2840 -1 - 1419 Aspartate ammonia-lyase (EC 4.3.1.1) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229901.peg.1406 CDS AJMG02000021.1 4488 4970 3 + 483 FxsA protein - none -
fig|6666666.229901.peg.1407 CDS AJMG02000021.1 5057 5347 2 + 291 Heat shock protein 60 family co-chaperone GroES GroEL GroES
fig|6666666.229901.peg.1408 CDS AJMG02000021.1 5468 7111 2 + 1644 Heat shock protein 60 family chaperone GroEL GroEL GroES
fig|6666666.229901.peg.1409 CDS AJMG02000021.1 8057 7200 -2 - 858 Methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5) / Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9) 5-FCL-like protein;
One-carbon metabolism by tetrahydropterines;
One-carbon metabolism by tetrahydropterines
fig|6666666.229901.peg.1410 CDS AJMG02000022.1 42 1184 3 + 1143 Translation elongation factor Tu Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Translation elongation factors bacterial;
Universal GTPases
fig|6666666.229901.peg.1411 CDS AJMG02000023.1 1723 191 -1 - 1533 Na+/H+ antiporter - none -
fig|6666666.229901.peg.1412 CDS AJMG02000023.1 2164 2562 1 + 399 DNA-binding protein H-NS - none -
fig|6666666.229901.peg.1413 CDS AJMG02000023.1 2614 3483 1 + 870 Formyltetrahydrofolate deformylase (EC 3.5.1.10) 5-FCL-like protein;
One-carbon metabolism by tetrahydropterines
fig|6666666.229901.peg.1414 CDS AJMG02000023.1 3618 4247 3 + 630 Cell division protein FtsJ / Ribosomal RNA large subunit methyltransferase E (EC 2.1.1.-) ## LSU rRNA Um2552 Bacterial Cell Division;
RNA methylation
fig|6666666.229901.peg.1415 CDS AJMG02000023.1 4354 6192 1 + 1839 Cell division protein FtsH (EC 3.4.24.-) Bacterial Cell Division;
Cell division-ribosomal stress proteins cluster;
Folate biosynthesis cluster
fig|6666666.229901.peg.1416 CDS AJMG02000023.1 6165 6323 3 + 159 hypothetical protein - none -
fig|6666666.229901.peg.1417 CDS AJMG02000023.1 7271 6534 -2 - 738 Ferric iron ABC transporter, ATP-binding protein Iron acquisition in Streptococcus
fig|6666666.229901.peg.1418 CDS AJMG02000023.1 8462 7293 -2 - 1170 Ferric iron ABC transporter, permease protein Iron acquisition in Streptococcus
fig|6666666.229901.peg.1419 CDS AJMG02000023.1 9265 8468 -1 - 798 Thiamin ABC transporter, ATPase component Thiamin biosynthesis
fig|6666666.229901.peg.1420 CDS AJMG02000023.1 9772 9287 -1 - 486 ABC-type Fe3+ transport system, periplasmic component - none -
fig|6666666.229901.peg.1421 CDS AJMG02000023.1 10659 11909 3 + 1251 Phosphoglycerate transport regulatory protein PgtC Phosphoglycerate transport system
fig|6666666.229901.peg.1422 CDS AJMG02000023.1 11906 13888 2 + 1983 Phosphoglycerate transport system sensor protein PgtB (EC 2.7.3.-) Phosphoglycerate transport system
fig|6666666.229901.peg.1423 CDS AJMG02000023.1 13881 15131 3 + 1251 Phosphoglycerate transport system transcriptional regulatory protein PgtA Phosphoglycerate transport system
fig|6666666.229901.peg.1424 CDS AJMG02000023.1 16018 15179 -1 - 840 NADPH dependent preQ0 reductase (EC 1.7.1.13) - none -
fig|6666666.229901.peg.1425 CDS AJMG02000023.1 16809 16027 -3 - 783 Zn-ribbon-containing, possibly nucleic-acid-binding protein - none -
fig|6666666.229901.peg.1426 CDS AJMG02000023.1 16916 17230 2 + 315 Hypothetical protein YqcC (clustered with tRNA pseudouridine synthase C) - none -
fig|6666666.229901.peg.1427 CDS AJMG02000023.1 17227 17940 1 + 714 tRNA pseudouridine synthase C (EC 4.2.1.70) RNA pseudouridine syntheses;
tRNA modification Bacteria
fig|6666666.229901.peg.1428 CDS AJMG02000023.1 17994 18158 3 + 165 hypothetical protein - none -
fig|6666666.229901.peg.1429 CDS AJMG02000023.1 18349 18558 1 + 210 Cold shock protein CspD Cold shock, CspA family of proteins
fig|6666666.229901.peg.1430 CDS AJMG02000023.1 19070 18624 -2 - 447 Macrodomain Ter protein YcbG - none -
fig|6666666.229901.peg.1431 CDS AJMG02000023.1 19217 21001 2 + 1785 ATP-dependent protease La (EC 3.4.21.53) Type II Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229901.peg.1432 CDS AJMG02000023.1 21144 21674 3 + 531 3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabA form (EC 4.2.1.59) Fatty Acid Biosynthesis FASII
fig|6666666.229901.peg.1433 CDS AJMG02000023.1 22099 22455 1 + 357 DsrE-related protein - none -
fig|6666666.229901.peg.1434 CDS AJMG02000023.1 22526 26191 2 + 3666 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) DNA repair, bacterial RecBCD pathway
fig|6666666.229901.peg.1435 CDS AJMG02000023.1 26191 28170 1 + 1980 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) DNA repair, bacterial RecBCD pathway
fig|6666666.229901.peg.1436 CDS AJMG02000023.1 28183 28779 1 + 597 hypothetical protein - none -
fig|6666666.229901.peg.1437 CDS AJMG02000023.1 29023 29451 1 + 429 LSU ribosomal protein L13p (L13Ae) Ribosome LSU bacterial
fig|6666666.229901.peg.1438 CDS AJMG02000023.1 29468 29860 2 + 393 SSU ribosomal protein S9p (S16e) Ribosome SSU bacterial
fig|6666666.229901.peg.1439 CDS AJMG02000023.1 30024 29905 -3 - 120 hypothetical protein - none -
fig|6666666.229901.peg.1440 CDS AJMG02000023.1 30023 30808 2 + 786 tRNA pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229901.peg.1441 CDS AJMG02000023.1 31356 31102 -3 - 255 RelB/StbD replicon stabilization protein (antitoxin to RelE/StbE) Toxin-antitoxin replicon stabilization systems
fig|6666666.229901.peg.1442 CDS AJMG02000023.1 33030 31573 -3 - 1458 2-oxoglutarate/malate translocator - none -
fig|6666666.229901.peg.1443 CDS AJMG02000023.1 33260 34039 2 + 780 Protein of unknown function DUF419 - none -
fig|6666666.229901.peg.1444 CDS AJMG02000023.1 36577 34097 -1 - 2481 Trimethylamine-N-oxide reductase (EC 1.6.6.9) - none -
fig|6666666.229901.peg.1445 CDS AJMG02000023.1 37738 36638 -1 - 1101 Cytochrome c-type protein TorY - none -
fig|6666666.229901.peg.1446 CDS AJMG02000023.1 38044 39501 1 + 1458 tRNA S(4)U 4-thiouridine synthase (former ThiI) / Rhodanese-like domain required for thiamine synthesis Thiamin biosynthesis;
Thiamin biosynthesis;
tRNA modification Bacteria;
tRNA modification Bacteria
fig|6666666.229901.peg.1447 CDS AJMG02000023.1 40289 39585 -2 - 705 Alpha-aspartyl dipeptidase Peptidase E (EC 3.4.13.21) Dipeptidases (EC 3.4.13.-)
fig|6666666.229901.peg.1448 CDS AJMG02000023.1 40568 41464 2 + 897 Putative DNA-binding protein in cluster with Type I restriction-modification system Restriction-Modification System
fig|6666666.229901.peg.1449 CDS AJMG02000023.1 42497 41529 -2 - 969 FIG002813: LPPG:FO 2-phospho-L-lactate transferase like, CofD-like - none -
fig|6666666.229901.peg.1450 CDS AJMG02000023.1 42855 43868 3 + 1014 Molybdenum cofactor biosynthesis protein MoaA Molybdenum cofactor biosynthesis;
ar-104-EC Molybdenum cofactor biosynthesis moaABCDE
fig|6666666.229901.peg.1451 CDS AJMG02000023.1 43881 44402 3 + 522 Molybdenum cofactor biosynthesis protein MoaC Molybdenum cofactor biosynthesis;
ar-104-EC Molybdenum cofactor biosynthesis moaABCDE
fig|6666666.229901.peg.1452 CDS AJMG02000023.1 44402 44650 2 + 249 Molybdenum cofactor biosynthesis protein MoaD Molybdenum cofactor biosynthesis;
ar-104-EC Molybdenum cofactor biosynthesis moaABCDE
fig|6666666.229901.peg.1453 CDS AJMG02000023.1 44651 45106 2 + 456 Molybdenum cofactor biosynthesis protein MoaE Molybdenum cofactor biosynthesis;
ar-104-EC Molybdenum cofactor biosynthesis moaABCDE
fig|6666666.229901.peg.1454 CDS AJMG02000023.1 45306 45947 3 + 642 Stringent starvation protein A Carbon Starvation
fig|6666666.229901.peg.1455 CDS AJMG02000023.1 45959 46420 2 + 462 Stringent starvation protein B Carbon Starvation
fig|6666666.229901.peg.1456 CDS AJMG02000023.1 47986 46583 -1 - 1404 Asparaginyl-tRNA synthetase (EC 6.1.1.22) tRNA aminoacylation, Asp and Asn
fig|6666666.229901.peg.1457 CDS AJMG02000023.1 48182 49411 2 + 1230 Mlc, transcriptional repressor of MalT (the transcriptional activator of maltose regulon) and manXYZ operon Maltose and Maltodextrin Utilization
fig|6666666.229901.peg.1458 CDS AJMG02000023.1 49488 50216 3 + 729 Dethiobiotin synthetase (EC 6.3.3.3) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229901.peg.1459 CDS AJMG02000023.1 50946 50305 -3 - 642 Autoinducer 2 (AI-2) kinase LsrK (EC 2.7.1.-) Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229901.peg.1460 CDS AJMG02000023.1 52701 51736 -3 - 966 LsrR, transcriptional repressor of lsr operon Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229901.peg.1461 CDS AJMG02000023.1 52945 54462 1 + 1518 Autoinducer 2 (AI-2) ABC transport system, fused AI2 transporter subunits and ATP-binding component Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229901.peg.1462 CDS AJMG02000023.1 54471 55502 3 + 1032 Autoinducer 2 (AI-2) ABC transport system, membrane channel protein LsrC Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229901.peg.1463 CDS AJMG02000023.1 55516 56520 1 + 1005 Autoinducer 2 (AI-2) ABC transport system, membrane channel protein LsrD Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229901.peg.1464 CDS AJMG02000023.1 56545 57642 1 + 1098 Autoinducer 2 (AI-2) ABC transport system, periplasmic AI-2 binding protein LsrB Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229901.peg.1465 CDS AJMG02000023.1 57666 58544 3 + 879 Autoinducer 2 (AI-2) aldolase LsrF (EC 4.2.1.-) Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229901.peg.1466 CDS AJMG02000023.1 58577 58879 2 + 303 Autoinducer 2 (AI-2) modifying protein LsrG Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229901.peg.1467 CDS AJMG02000023.1 60389 58983 -2 - 1407 Pyruvate kinase (EC 2.7.1.40) Glycerate metabolism;
Glycolysis and Gluconeogenesis;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229901.peg.1468 CDS AJMG02000023.1 61664 60675 -2 - 990 Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) Ribonucleotide reduction
fig|6666666.229901.peg.1469 CDS AJMG02000023.1 63480 61795 -3 - 1686 Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) Ribonucleotide reduction
fig|6666666.229901.peg.1470 CDS AJMG02000023.1 64562 63756 -2 - 807 Tryptophan synthase alpha chain (EC 4.2.1.20) Auxin biosynthesis;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229901.peg.1471 CDS AJMG02000023.1 65758 64565 -1 - 1194 Tryptophan synthase beta chain (EC 4.2.1.20) Auxin biosynthesis;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229901.peg.1472 CDS AJMG02000023.1 66535 65768 -1 - 768 3-hydroxypropionate dehydrogenase (EC 1.1.1.298) - none -
fig|6666666.229901.peg.1473 CDS AJMG02000023.1 66941 67705 2 + 765 Outer membrane receptor for lactoferrin or transferrin, TonB-dependent protein A - none -
fig|6666666.229901.peg.1474 CDS AJMG02000023.1 71214 69910 -3 - 1305 Oxaloacetate decarboxylase beta chain (EC 4.1.1.3) Na+ translocating decarboxylases and related biotin-dependent enzymes;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229901.peg.1475 CDS AJMG02000023.1 73021 71225 -1 - 1797 Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3) Na+ translocating decarboxylases and related biotin-dependent enzymes;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229901.peg.1476 CDS AJMG02000023.1 73303 73037 -1 - 267 Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3) Na+ translocating decarboxylases and related biotin-dependent enzymes;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229901.peg.1477 CDS AJMG02000023.1 73495 73337 -1 - 159 hypothetical protein - none -
fig|6666666.229901.peg.1478 CDS AJMG02000023.1 74593 74318 -1 - 276 [NiFe] hydrogenase metallocenter assembly protein HybG G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229901.peg.1479 CDS AJMG02000023.1 74906 74742 -2 - 165 hypothetical protein - none -
fig|6666666.229901.peg.1480 CDS AJMG02000023.1 76475 75045 -2 - 1431 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24) Auxin biosynthesis;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis;
Tryptophan synthesis
fig|6666666.229901.peg.1481 CDS AJMG02000023.1 77485 76484 -1 - 1002 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) Auxin biosynthesis;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229901.peg.1482 CDS AJMG02000023.1 77889 77497 -3 - 393 putative - none -
fig|6666666.229901.peg.1483 CDS AJMG02000023.1 78552 78028 -3 - 525 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229901.peg.1484 CDS AJMG02000023.1 80109 78604 -3 - 1506 Anthranilate synthase, aminase component (EC 4.1.3.27) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229901.peg.1485 CDS AJMG02000023.1 80831 80277 -2 - 555 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC 3.1.3.45) - none -
fig|6666666.229901.peg.1486 CDS AJMG02000023.1 81766 80831 -1 - 936 Arabinose 5-phosphate isomerase (EC 5.3.1.13) - none -
fig|6666666.229901.peg.1487 CDS AJMG02000023.1 82449 83324 3 + 876 Probable protease htpX homolog - none -
fig|6666666.229901.peg.1488 CDS AJMG02000023.1 83586 84575 3 + 990 Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20) tRNA aminoacylation, Phe
fig|6666666.229901.peg.1489 CDS AJMG02000023.1 84595 86985 1 + 2391 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) tRNA aminoacylation, Phe
fig|6666666.229901.peg.1490 CDS AJMG02000023.1 86989 87285 1 + 297 Integration host factor alpha subunit DNA structural proteins, bacterial
fig|6666666.229901.peg.1491 CDS AJMG02000023.1 87337 87825 1 + 489 Probable lipoprotein nlpC precursor - none -
fig|6666666.229901.peg.1492 CDS AJMG02000023.1 88885 87920 -1 - 966 tRNA(Cytosine32)-2-thiocytidine synthetase CBSS-326442.4.peg.1852;
tRNA modification Bacteria
fig|6666666.229901.peg.1493 CDS AJMG02000023.1 89026 89442 1 + 417 putative membrane protein - none -
fig|6666666.229901.peg.1494 CDS AJMG02000023.1 90866 89532 -2 - 1335 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins Ton and Tol transport systems
fig|6666666.229901.peg.1495 CDS AJMG02000023.1 91540 91019 -1 - 522 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins Ton and Tol transport systems
fig|6666666.229901.peg.1496 CDS AJMG02000023.1 92039 91542 -2 - 498 FIG00697418: hypothetical protein - none -
fig|6666666.229901.peg.1497 CDS AJMG02000023.1 92250 93251 3 + 1002 ABC transporter, solute-binding protein - none -
fig|6666666.229901.peg.1498 CDS AJMG02000023.1 93251 94264 2 + 1014 Vitamin B12 ABC transporter, permease component BtuC - none -
fig|6666666.229901.peg.1499 CDS AJMG02000023.1 94261 95010 1 + 750 ABC transporter ATP-binding protein - none -
fig|6666666.229901.peg.1500 CDS AJMG02000023.1 95105 95965 2 + 861 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins Ton and Tol transport systems
fig|6666666.229901.peg.1501 CDS AJMG02000023.1 95993 97501 2 + 1509 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins Ton and Tol transport systems
fig|6666666.229901.peg.1502 CDS AJMG02000023.1 97829 97620 -2 - 210 Molybdate-binding domain of ModE Molybdenum cofactor biosynthesis
fig|6666666.229901.peg.1503 CDS AJMG02000023.1 98945 97911 -2 - 1035 FIG00362752: hypothetical protein - none -
fig|6666666.229901.peg.1504 CDS AJMG02000023.1 99752 98958 -2 - 795 Glutathione synthetase (EC 6.3.2.3) Cluster containing Glutathione synthetase;
Glutathione: Biosynthesis and gamma-glutamyl cycle;
Heat shock dnaK gene cluster extended
fig|6666666.229901.peg.1505 CDS AJMG02000023.1 100771 99752 -1 - 1020 Vitamin B12 ABC transporter, permease component BtuC - none -
fig|6666666.229901.peg.1506 CDS AJMG02000023.1 100921 100790 -1 - 132 hypothetical protein - none -
fig|6666666.229901.peg.1507 CDS AJMG02000023.1 102317 100899 -2 - 1419 Outer membrane component of tripartite multidrug resistance system Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria
fig|6666666.229901.peg.1508 CDS AJMG02000023.1 103230 102337 -3 - 894 ABC-type multidrug transport system, permease component - none -
fig|6666666.229901.peg.1509 CDS AJMG02000023.1 103465 103232 -1 - 234 ABC-type multidrug transport system, permease component - none -
fig|6666666.229901.peg.1510 CDS AJMG02000023.1 105560 103467 -2 - 2094 ABC-type multidrug transport system, permease component - none -
fig|6666666.229901.peg.1511 CDS AJMG02000023.1 106209 105529 -3 - 681 ABC-type multidrug transport system, permease component - none -
fig|6666666.229901.peg.1512 CDS AJMG02000023.1 107171 106212 -2 - 960 HlyD family secretion protein - none -
fig|6666666.229901.peg.1513 CDS AJMG02000023.1 107468 107292 -2 - 177 hypothetical protein - none -
fig|6666666.229901.peg.1514 CDS AJMG02000023.1 107522 107908 2 + 387 Transcriptional regulator, TetR family - none -
fig|6666666.229901.peg.1515 CDS AJMG02000023.1 109149 107959 -3 - 1191 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229901.peg.1516 CDS AJMG02000023.1 109571 112180 2 + 2610 Membrane alanine aminopeptidase N (EC 3.4.11.2) Aminopeptidases (EC 3.4.11.-)
fig|6666666.229901.peg.1517 CDS AJMG02000023.1 112252 113271 1 + 1020 Dihydroorotate dehydrogenase (EC 1.3.3.1) De Novo Pyrimidine Synthesis
fig|6666666.229901.peg.1518 CDS AJMG02000023.1 113371 113820 1 + 450 COG0613, Predicted metal-dependent phosphoesterases (PHP family) YrdC-YciO-Sua5 protein family;
tRNA modification Bacteria
fig|6666666.229901.peg.1519 CDS AJMG02000023.1 115476 116501 3 + 1026 DNA topoisomerase I (EC 5.99.1.2) CBSS-272943.3.peg.1367;
Conserved gene cluster associated with Met-tRNA formyltransferase;
DNA topoisomerases, Type I, ATP-independent
fig|6666666.229901.peg.1520 CDS AJMG02000023.1 117422 116586 -2 - 837 ABC-type Co2+ transport system, periplasmic component - none -
fig|6666666.229901.peg.1521 CDS AJMG02000023.1 118481 117549 -2 - 933 Universal stress protein E Universal stress protein family
fig|6666666.229901.peg.1522 CDS AJMG02000023.1 119373 118600 -3 - 774 Fumarate and nitrate reduction regulatory protein Oxidative stress
fig|6666666.229901.peg.1523 CDS AJMG02000023.1 119481 119651 3 + 171 hypothetical protein - none -
fig|6666666.229901.peg.1524 CDS AJMG02000023.1 120210 119713 -3 - 498 Ferritin-like protein 2 - none -
fig|6666666.229901.peg.1525 CDS AJMG02000023.1 120711 120226 -3 - 486 Ferritin-like protein 2 - none -
fig|6666666.229901.peg.1526 CDS AJMG02000023.1 121822 121532 -1 - 291 FIG00698722: hypothetical protein - none -
fig|6666666.229901.peg.1527 CDS AJMG02000023.1 122460 121834 -3 - 627 hypothetical protein - none -
fig|6666666.229901.peg.1528 CDS AJMG02000024.1 2 2209 2 + 2208 Cell division protein FtsK Bacterial Cell Division;
Bacterial Cytoskeleton;
Bacterial RNA-metabolizing Zn-dependent hydrolases;
CBSS-83333.1.peg.876
fig|6666666.229901.peg.1529 CDS AJMG02000024.1 2302 2919 1 + 618 Outer membrane lipoprotein carrier protein LolA CBSS-83333.1.peg.876;
Lipopolysaccharide assembly;
Lipoprotein sorting system
fig|6666666.229901.peg.1530 CDS AJMG02000024.1 2932 4272 1 + 1341 FIG065221: Holliday junction DNA helicase CBSS-83333.1.peg.876
fig|6666666.229901.peg.1531 CDS AJMG02000024.1 6436 4769 -1 - 1668 C4-dicarboxylate transporter DcuB - none -
fig|6666666.229901.peg.1532 CDS AJMG02000024.1 6744 8060 3 + 1317 Seryl-tRNA synthetase (EC 6.1.1.11) CBSS-326442.4.peg.1852;
Glycine and Serine Utilization;
tRNA aminoacylation, Ser
fig|6666666.229901.peg.1533 CDS AJMG02000024.1 8041 8154 1 + 114 hypothetical protein - none -
fig|6666666.229901.peg.1534 CDS AJMG02000024.1 9035 8139 -2 - 897 Cytidine deaminase (EC 3.5.4.5) Murein hydrolase regulation and cell death;
pyrimidine conversions;
tRNA modification Bacteria
fig|6666666.229901.peg.1535 CDS AJMG02000024.1 10254 9157 -3 - 1098 ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1) Polyamine Metabolism
fig|6666666.229901.peg.1536 CDS AJMG02000024.1 11158 10385 -1 - 774 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) Polyamine Metabolism
fig|6666666.229901.peg.1537 CDS AJMG02000024.1 12018 11158 -3 - 861 Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) Polyamine Metabolism
fig|6666666.229901.peg.1538 CDS AJMG02000024.1 13120 12002 -1 - 1119 Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) Polyamine Metabolism
fig|6666666.229901.peg.1539 CDS AJMG02000024.1 13384 14628 1 + 1245 Tripeptide aminopeptidase (EC 3.4.11.4) - none -
fig|6666666.229901.peg.1540 CDS AJMG02000024.1 17361 14704 -3 - 2658 Paraquat-inducible protein B Oxidative stress
fig|6666666.229901.peg.1541 CDS AJMG02000024.1 18607 17324 -1 - 1284 Paraquat-inducible protein A Oxidative stress
fig|6666666.229901.peg.1542 CDS AJMG02000024.1 18825 19433 3 + 609 ProQ: influences osmotic activation of compatible solute ProP - none -
fig|6666666.229901.peg.1543 CDS AJMG02000024.1 19507 21564 1 + 2058 Tail-specific protease precursor (EC 3.4.21.102) - none -
fig|6666666.229901.peg.1544 CDS AJMG02000024.1 21642 23150 3 + 1509 L,D-transpeptidase YcbB CBSS-228400.4.peg.1623
fig|6666666.229901.peg.1545 CDS AJMG02000024.1 23329 23775 1 + 447 FIG001587: exported protein CBSS-228400.4.peg.1623
fig|6666666.229901.peg.1546 CDS AJMG02000024.1 23852 24490 2 + 639 Hypothetical metal-binding enzyme, YcbL homolog CBSS-228400.4.peg.1623
fig|6666666.229901.peg.1547 CDS AJMG02000024.1 24684 24562 -3 - 123 hypothetical protein - none -
fig|6666666.229901.peg.1548 CDS AJMG02000024.1 24769 27576 1 + 2808 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) Dehydrogenase complexes
fig|6666666.229901.peg.1549 CDS AJMG02000024.1 27772 27602 -1 - 171 hypothetical protein - none -
fig|6666666.229901.peg.1550 CDS AJMG02000024.1 28411 27782 -1 - 630 hypothetical protein - none -
fig|6666666.229901.peg.1551 CDS AJMG02000024.1 28762 28878 1 + 117 Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61) Dehydrogenase complexes
fig|6666666.229901.peg.1552 CDS AJMG02000024.1 29065 30234 1 + 1170 Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) - none -
fig|6666666.229901.peg.1554 CDS AJMG02000024.1 33511 31289 -1 - 2223 Formate dehydrogenase H (EC 1.2.1.2) @ selenocysteine-containing Formate dehydrogenase
fig|6666666.229901.peg.1556 CDS AJMG02000024.1 34501 34040 -1 - 462 Hydrogenase 3 maturation protease (EC 3.4.-.-) - none -
fig|6666666.229901.peg.1557 CDS AJMG02000024.1 34895 34491 -2 - 405 Formate hydrogenlyase transcriptional activator Formate hydrogenase
fig|6666666.229901.peg.1558 CDS AJMG02000024.1 35806 35030 -1 - 777 Formate hydrogenlyase subunit 7 Formate hydrogenase
fig|6666666.229901.peg.1559 CDS AJMG02000024.1 36450 35803 -3 - 648 Formate hydrogenlyase complex 3 iron-sulfur protein; Formate hydrogenlyase subunit 6; Ni,Fe-hydrogenase III medium subunit Formate hydrogenase
fig|6666666.229901.peg.1560 CDS AJMG02000024.1 38194 36464 -1 - 1731 Formate hydrogenlyase subunit 5 Formate hydrogenase
fig|6666666.229901.peg.1561 CDS AJMG02000024.1 39752 38214 -2 - 1539 Hydrogenase-4 component F - none -
fig|6666666.229901.peg.1562 CDS AJMG02000024.1 40395 39757 -3 - 639 Hydrogenase-4 component E (EC 1.-.-.-) Formate hydrogenase
fig|6666666.229901.peg.1563 CDS AJMG02000024.1 41851 40406 -1 - 1446 Hydrogenase-4 component D - none -
fig|6666666.229901.peg.1564 CDS AJMG02000024.1 42826 41864 -1 - 963 Hydrogenase-4 component C - none -
fig|6666666.229901.peg.1565 CDS AJMG02000024.1 44858 42837 -2 - 2022 Hydrogenase-4 component B (EC 1.-.-.-) / Formate hydrogenlyase subunit 3 Formate hydrogenase;
Formate hydrogenase
fig|6666666.229901.peg.1566 CDS AJMG02000024.1 45490 44891 -1 - 600 Hydrogenase-4 component A - none -
fig|6666666.229901.peg.1567 CDS AJMG02000024.1 46599 48071 3 + 1473 [NiFe] hydrogenase metallocenter assembly protein HypF G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229901.peg.1568 CDS AJMG02000024.1 48542 48426 -2 - 117 hypothetical protein - none -
fig|6666666.229901.peg.1569 CDS AJMG02000024.1 49412 48699 -2 - 714 Formate dehydrogenase -O, gamma subunit (EC 1.2.1.2) Anaerobic respiratory reductases;
Formate hydrogenase
fig|6666666.229901.peg.1570 CDS AJMG02000024.1 50235 49405 -3 - 831 Formate dehydrogenase O beta subunit (EC 1.2.1.2) Formate dehydrogenase;
Formate hydrogenase
fig|6666666.229901.peg.1571 CDS AJMG02000024.1 53128 50333 -1 - 2796 Formate dehydrogenase N alpha subunit (EC 1.2.1.2) @ selenocysteine-containing Formate dehydrogenase;
Formate hydrogenase
fig|6666666.229901.peg.1572 CDS AJMG02000024.1 53357 53205 -2 - 153 Formate dehydrogenase O alpha subunit (EC 1.2.1.2) @ selenocysteine-containing Formate dehydrogenase;
Formate hydrogenase;
Selenocysteine metabolism
fig|6666666.229901.peg.1573 CDS AJMG02000024.1 53665 54489 1 + 825 Formate dehydrogenase chain D (EC 1.2.1.2) Formate hydrogenase
fig|6666666.229901.peg.1574 CDS AJMG02000024.1 54538 55536 1 + 999 Gluconate utilization system Gnt-I transcriptional repressor D-gluconate and ketogluconates metabolism
fig|6666666.229901.peg.1575 CDS AJMG02000024.1 55487 55609 2 + 123 hypothetical protein - none -
fig|6666666.229901.peg.1576 CDS AJMG02000024.1 56124 55606 -3 - 519 Gluconokinase (EC 2.7.1.12) D-gluconate and ketogluconates metabolism
fig|6666666.229901.peg.1577 CDS AJMG02000024.1 56342 57691 2 + 1350 Low-affinity gluconate/H+ symporter GntU D-gluconate and ketogluconates metabolism
fig|6666666.229901.peg.1578 CDS AJMG02000024.1 57859 60033 1 + 2175 ATP-dependent DNA helicase UvrD/PcrA DNA repair, bacterial UvrD and related helicases
fig|6666666.229901.peg.1579 CDS AJMG02000024.1 60876 60166 -3 - 711 DNA ligase (ATP) (EC 6.5.1.1) DNA ligases
fig|6666666.229901.peg.1580 CDS AJMG02000024.1 61197 61036 -3 - 162 hypothetical protein - none -
fig|6666666.229901.peg.1581 CDS AJMG02000024.1 61913 61170 -2 - 744 Probable transmembrane protein - none -
fig|6666666.229901.peg.1582 CDS AJMG02000024.1 62180 61926 -2 - 255 YoeB toxin protein Toxin-antitoxin replicon stabilization systems
fig|6666666.229901.peg.1583 CDS AJMG02000024.1 62428 62177 -1 - 252 YefM protein (antitoxin to YoeB) Toxin-antitoxin replicon stabilization systems
fig|6666666.229901.peg.1584 CDS AJMG02000024.1 63493 62537 -1 - 957 Polysaccharide polymerization protein - none -
fig|6666666.229901.peg.1585 CDS AJMG02000024.1 65049 63490 -3 - 1560 putative flippase - none -
fig|6666666.229901.peg.1586 CDS AJMG02000024.1 65180 65956 2 + 777 Lipopolysaccharide core biosynthesis glycosyltransferase WadA - none -
fig|6666666.229901.peg.1587 CDS AJMG02000024.1 65965 67158 1 + 1194 DNA for glycosyltransferase, lytic transglycosylase, dTDP-4-rhamnose reductase Rhamnose containing glycans
fig|6666666.229901.peg.1588 CDS AJMG02000024.1 67158 68039 3 + 882 Glycosyltransferase - none -
fig|6666666.229901.peg.1589 CDS AJMG02000024.1 68108 68917 2 + 810 Glucosyl-3-phosphoglycerate synthase (EC 2.4.1.266) - none -
fig|6666666.229901.peg.1590 CDS AJMG02000024.1 69067 68906 -1 - 162 hypothetical protein - none -
fig|6666666.229901.peg.1591 CDS AJMG02000024.1 68919 70049 3 + 1131 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) Murein Hydrolases;
Peptidoglycan Biosynthesis
fig|6666666.229901.peg.1592 CDS AJMG02000024.1 70120 71187 1 + 1068 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229901.peg.1593 CDS AJMG02000024.1 71265 72137 3 + 873 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229901.peg.1594 CDS AJMG02000024.1 72139 73023 1 + 885 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229901.peg.1595 CDS AJMG02000024.1 73026 73568 3 + 543 dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) Capsular heptose biosynthesis;
Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229901.peg.1596 CDS AJMG02000024.1 73580 74365 2 + 786 O-antigen export system permease protein RfbD - none -
fig|6666666.229901.peg.1597 CDS AJMG02000024.1 74464 75114 1 + 651 Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40) Rhamnose containing glycans
fig|6666666.229901.peg.1598 CDS AJMG02000024.1 75122 77020 2 + 1899 Alpha-L-Rha alpha-1,2-L-rhamnosyltransferase/alpha-L-Rha alpha-1,3-L- rhamnosyltransferase (EC 2.4.1.-) Rhamnose containing glycans
fig|6666666.229901.peg.1599 CDS AJMG02000024.1 77025 77837 3 + 813 UDP-glucose 4-epimerase (EC 5.1.3.2) Lactose and Galactose Uptake and Utilization;
Rhamnose containing glycans
fig|6666666.229901.peg.1600 CDS AJMG02000024.1 77841 78875 3 + 1035 Exopolysaccharide production protein ExoZ - none -
fig|6666666.229901.peg.1601 CDS AJMG02000024.1 78933 79805 3 + 873 Alpha-L-Rha alpha-1,3-L-rhamnosyltransferase (EC 2.4.1.-) Rhamnose containing glycans
fig|6666666.229901.peg.1602 CDS AJMG02000024.1 79815 80771 3 + 957 O antigen biosynthesis rhamnosyltransferase rfbN (EC 2.4.1.-) - none -
fig|6666666.229901.peg.1603 CDS AJMG02000024.1 80734 82152 1 + 1419 Undecaprenyl-phosphate galactosephosphotransferase (EC 2.7.8.6) - none -
fig|6666666.229901.peg.1604 CDS AJMG02000024.1 82693 83496 1 + 804 Exodeoxyribonuclease III (EC 3.1.11.2) DNA repair, bacterial
fig|6666666.229901.peg.1605 CDS AJMG02000024.1 83496 84290 3 + 795 DNA for glycosyltransferase, lytic transglycosylase, dTDP-4-rhamnose reductase Rhamnose containing glycans
fig|6666666.229901.peg.1606 CDS AJMG02000024.1 84315 84857 3 + 543 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229901.peg.1607 CDS AJMG02000024.1 84818 85342 2 + 525 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229901.peg.1608 CDS AJMG02000024.1 86244 85504 -3 - 741 FIG00698611: hypothetical protein - none -
fig|6666666.229901.peg.1609 CDS AJMG02000024.1 87176 86523 -2 - 654 GTP cyclohydrolase II (EC 3.5.4.25) Molybdenum cofactor biosynthesis;
Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster
fig|6666666.229901.peg.1610 CDS AJMG02000024.1 87265 87993 1 + 729 Phosphatidylglycerophosphatase B (EC 3.1.3.27) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Osmotic stress cluster
fig|6666666.229901.peg.1611 CDS AJMG02000024.1 88043 88957 2 + 915 ROK family Glucokinase with ambiguous substrate specificity - none -
fig|6666666.229901.peg.1612 CDS AJMG02000024.1 89346 89083 -3 - 264 Mobile element protein - none -
fig|6666666.229901.peg.1613 CDS AJMG02000024.1 90317 89733 -2 - 585 Putative lipoprotein yceB precursor - none -
fig|6666666.229901.peg.1614 CDS AJMG02000024.1 90405 91040 3 + 636 unknown - none -
fig|6666666.229901.peg.1615 CDS AJMG02000024.1 91061 91846 2 + 786 serine/threonine protein kinase - none -
fig|6666666.229901.peg.1616 CDS AJMG02000024.1 91843 91971 1 + 129 hypothetical protein - none -
fig|6666666.229901.peg.1617 CDS AJMG02000024.1 94087 92354 -1 - 1734 Transport ATP-binding protein CydC Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229901.peg.1618 CDS AJMG02000024.1 95850 94087 -3 - 1764 Transport ATP-binding protein CydD Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229901.peg.1619 CDS AJMG02000024.1 96909 95956 -3 - 954 Thioredoxin reductase (EC 1.8.1.9) Thioredoxin-disulfide reductase;
pyrimidine conversions
fig|6666666.229901.peg.1620 CDS AJMG02000024.1 97826 96969 -2 - 858 FIG000875: Thioredoxin domain-containing protein EC-YbbN - none -
fig|6666666.229901.peg.1621 CDS AJMG02000024.1 99054 98236 -3 - 819 Aldose 1-epimerase - none -
fig|6666666.229901.peg.1622 CDS AJMG02000024.1 99130 101067 1 + 1938 DinG family ATP-dependent helicase YoaA DNA repair, bacterial DinG and relatives
fig|6666666.229901.peg.1623 CDS AJMG02000024.1 101070 101792 3 + 723 TsaB protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Ribosome biogenesis bacterial;
YgjD and YeaZ;
YjeE;
YrdC-YciO-Sua5 protein family
fig|6666666.229901.peg.1624 CDS AJMG02000024.1 101825 102382 2 + 558 Starvation lipoprotein Slp paralog Carbon Starvation
fig|6666666.229901.peg.1625 CDS AJMG02000024.1 102425 104101 2 + 1677 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) Biotin biosynthesis;
Biotin synthesis cluster
fig|6666666.229901.peg.1626 CDS AJMG02000024.1 104184 105341 3 + 1158 Ribonuclease D (EC 3.1.26.3) tRNA processing
fig|6666666.229901.peg.1627 CDS AJMG02000024.1 106811 105429 -2 - 1383 Cytochrome c551 peroxidase (EC 1.11.1.5) Protection from Reactive Oxygen Species
fig|6666666.229901.peg.1628 CDS AJMG02000024.1 108613 109434 1 + 822 probable glucanotransferase (endo alpha-1,4 polygalactosaminidase related protein) - none -
fig|6666666.229901.peg.1629 CDS AJMG02000024.1 109956 110882 3 + 927 Putative stomatin/prohibitin-family membrane protease subunit YbbK - none -
fig|6666666.229901.peg.1630 CDS AJMG02000024.1 110906 111352 2 + 447 Putative activity regulator of membrane protease YbbK - none -
fig|6666666.229901.peg.1631 CDS AJMG02000024.1 111361 111972 1 + 612 NAD(P)H oxidoreductase YRKL (EC 1.6.99.-) @ Putative NADPH-quinone reductase (modulator of drug activity B) @ Flavodoxin 2 Flavodoxin;
Flavodoxin
fig|6666666.229901.peg.1632 CDS AJMG02000024.1 111972 112535 3 + 564 Putative oxidoreductase component of anaerobic dehydrogenases; Functional role page for Chaperone protein TorD - none -
fig|6666666.229901.peg.1633 CDS AJMG02000024.1 113528 112593 -2 - 936 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) - none -
fig|6666666.229901.peg.1634 CDS AJMG02000024.1 113642 115072 2 + 1431 ADP-heptose synthase (EC 2.7.-.-) / D-glycero-beta-D-manno-heptose 7-phosphate kinase LOS core oligosaccharide biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.229901.peg.1635 CDS AJMG02000024.1 115496 115116 -2 - 381 Cysteine desulfurase CsdA-CsdE, sulfur acceptor protein CsdE - none -
fig|6666666.229901.peg.1636 CDS AJMG02000024.1 116008 115493 -1 - 516 Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA Alanine biosynthesis;
mnm5U34 biosynthesis bacteria
fig|6666666.229901.peg.1637 CDS AJMG02000024.1 116158 116271 1 + 114 hypothetical protein - none -
fig|6666666.229901.peg.1638 CDS AJMG02000024.1 117175 116675 -1 - 501 Micrococcal nuclease (thermonuclease) homologs - none -
fig|6666666.229901.peg.1639 CDS AJMG02000024.1 117645 118004 3 + 360 Antiholin-like protein LrgA Murein hydrolase regulation and cell death
fig|6666666.229901.peg.1640 CDS AJMG02000024.1 118004 118696 2 + 693 LrgA-associated membrane protein LrgB Murein hydrolase regulation and cell death
fig|6666666.229901.peg.1641 CDS AJMG02000024.1 118698 120050 3 + 1353 Deoxyguanosinetriphosphate triphosphohydrolase (EC 3.1.5.1) - none -
fig|6666666.229901.peg.1642 CDS AJMG02000024.1 120092 122035 2 + 1944 ABC transporter ATP-binding protein - none -
fig|6666666.229901.peg.1643 CDS AJMG02000024.1 122296 123294 1 + 999 FIG00781545: hypothetical protein - none -
fig|6666666.229901.peg.1644 CDS AJMG02000024.1 123524 123793 2 + 270 Putative sugar phosphotransferase component II B - none -
fig|6666666.229901.peg.1645 CDS AJMG02000024.1 123810 123947 3 + 138 FIG00732228: membrane protein - none -
fig|6666666.229901.peg.1646 CDS AJMG02000024.1 123956 125164 2 + 1209 FIG00732228: membrane protein - none -
fig|6666666.229901.peg.1647 CDS AJMG02000024.1 125174 125998 2 + 825 Transketolase, N-terminal section (EC 2.2.1.1) Pentose phosphate pathway
fig|6666666.229901.peg.1648 CDS AJMG02000024.1 125988 126932 3 + 945 Transketolase, C-terminal section (EC 2.2.1.1) Pentose phosphate pathway
fig|6666666.229901.peg.1649 CDS AJMG02000024.1 128049 127099 -3 - 951 Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p YrdC-YciO-Sua5 protein family
fig|6666666.229901.peg.1650 CDS AJMG02000024.1 128112 128618 3 + 507 FIG001674: hypothetical protein - none -
fig|6666666.229901.peg.1651 CDS AJMG02000024.1 130756 128615 -1 - 2142 Putative efflux (PET) family inner membrane protein YccS CBSS-83333.1.peg.946
fig|6666666.229901.peg.1652 CDS AJMG02000024.1 131238 130765 -3 - 474 Inner membrane protein YccF CBSS-83333.1.peg.946
fig|6666666.229901.peg.1653 CDS AJMG02000024.1 131696 131238 -2 - 459 Methylglyoxal synthase (EC 4.2.3.3) CBSS-83333.1.peg.946;
Methylglyoxal Metabolism
fig|6666666.229901.peg.1654 CDS AJMG02000024.1 132433 131759 -1 - 675 UPF0319 protein YccT precursor CBSS-83333.1.peg.946
fig|6666666.229901.peg.1655 CDS AJMG02000024.1 132578 132850 2 + 273 Acylphosphate phosphohydrolase (EC 3.6.1.7), putative Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229901.peg.1656 CDS AJMG02000024.1 133673 132825 -2 - 849 Manganese ABC transporter, inner membrane permease protein SitD - none -
fig|6666666.229901.peg.1657 CDS AJMG02000024.1 134527 133670 -1 - 858 Manganese ABC transporter, inner membrane permease protein SitC - none -
fig|6666666.229901.peg.1658 CDS AJMG02000024.1 135417 134527 -3 - 891 Manganese ABC transporter, ATP-binding protein SitB - none -
fig|6666666.229901.peg.1659 CDS AJMG02000024.1 136298 135417 -2 - 882 Manganese ABC transporter, periplasmic-binding protein SitA - none -
fig|6666666.229901.peg.1660 CDS AJMG02000024.1 136725 136396 -3 - 330 tRNA 2-thiouridine synthesizing protein E (EC 2.8.1.-) CBSS-326442.4.peg.1852;
Lipoic acid synthesis cluster;
Sulfite reduction-associated complex DsrMKJOP and co-clustering genes
fig|6666666.229901.peg.1661 CDS AJMG02000024.1 137473 136811 -1 - 663 Putative TEGT family carrier/transport protein CBSS-326442.4.peg.1852
fig|6666666.229901.peg.1662 CDS AJMG02000024.1 138027 138206 3 + 180 CRISPR-associated helicase Cas3 CRISPRs
fig|6666666.229901.peg.1663 CDS AJMG02000024.1 138423 141179 3 + 2757 helicase (Snf2/Rad54 family) - none -
fig|6666666.229901.peg.1664 CDS AJMG02000024.1 141468 142166 3 + 699 Putative cytoplasmic protein - none -
fig|6666666.229901.peg.1665 CDS AJMG02000024.1 142147 142338 1 + 192 FIG074102: hypothetical protein - none -
fig|6666666.229901.peg.1666 CDS AJMG02000024.1 145146 142873 -3 - 2274 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) Methionine Biosynthesis
fig|6666666.229901.peg.1667 CDS AJMG02000024.1 145446 146378 3 + 933 Transcriptional activator MetR LysR-family proteins in Escherichia coli;
LysR-family proteins in Salmonella enterica Typhimurium;
Methionine Biosynthesis
fig|6666666.229901.peg.1668 CDS AJMG02000024.1 146383 146502 1 + 120 hypothetical protein - none -
fig|6666666.229901.peg.1669 CDS AJMG02000024.1 146499 147110 3 + 612 Branched-chain amino acid transport protein AzlC - none -
fig|6666666.229901.peg.1670 CDS AJMG02000024.1 147111 147443 3 + 333 Branched-chain amino acid transport protein azlD - none -
fig|6666666.229901.peg.1671 CDS AJMG02000024.1 150284 147510 -2 - 2775 Probable zinc protease pqqL (EC 3.4.99.-) - none -
fig|6666666.229901.peg.1672 CDS AJMG02000024.1 152728 150362 -1 - 2367 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229901.peg.1673 CDS AJMG02000024.1 153030 153914 3 + 885 Membrane protein LAPB - none -
fig|6666666.229901.peg.1674 CDS AJMG02000024.1 153907 154584 1 + 678 Cytidylate kinase (EC 2.7.4.25) pyrimidine conversions
fig|6666666.229901.peg.1675 CDS AJMG02000024.1 154682 156328 2 + 1647 SSU ribosomal protein S1p Cell division-ribosomal stress proteins cluster;
Ribosome SSU bacterial
fig|6666666.229901.peg.1676 CDS AJMG02000024.1 156390 156677 3 + 288 Integration host factor beta subunit DNA structural proteins, bacterial
fig|6666666.229901.peg.1677 CDS AJMG02000024.1 156776 157072 2 + 297 Inner membrane protein yciS - none -
fig|6666666.229901.peg.1678 CDS AJMG02000024.1 157072 158262 1 + 1191 Heat shock (predicted periplasmic) protein YciM, precursor Osmotic stress cluster
fig|6666666.229901.peg.1679 CDS AJMG02000024.1 158292 158984 3 + 693 Orotidine 5@1-phosphate decarboxylase (EC 4.1.1.23) De Novo Pyrimidine Synthesis;
Riboflavin synthesis cluster
fig|6666666.229901.peg.1680 CDS AJMG02000024.1 158990 159307 2 + 318 Translation initiation factor SUI1-related protein Translation initiation factors bacterial
fig|6666666.229901.peg.1681 CDS AJMG02000024.1 159691 159341 -1 - 351 FIG00782386: hypothetical protein - none -
fig|6666666.229901.peg.1682 CDS AJMG02000024.1 162422 159759 -2 - 2664 DNA gyrase subunit A (EC 5.99.1.3) Cell Division Subsystem including YidCD;
DNA gyrase subunits;
DNA replication cluster 1;
DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.229901.peg.1683 CDS AJMG02000024.1 163030 162590 -1 - 441 Ferric uptake regulation protein FUR Bacterial RNA-metabolizing Zn-dependent hydrolases;
Oxidative stress
fig|6666666.229901.peg.1684 CDS AJMG02000024.1 163573 163049 -1 - 525 Flavodoxin 1 Flavodoxin
fig|6666666.229901.peg.1685 CDS AJMG02000024.1 164805 164005 -3 - 801 Esterase ybfF (EC 3.1.-.-) - none -
fig|6666666.229901.peg.1686 CDS AJMG02000024.1 164892 165509 3 + 618 SeqA protein, negative modulator of initiation of replication - none -
fig|6666666.229901.peg.1687 CDS AJMG02000024.1 165515 166930 2 + 1416 O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229901.peg.1688 CDS AJMG02000024.1 166939 170262 1 + 3324 Potassium efflux system KefA protein / Small-conductance mechanosensitive channel Potassium homeostasis
fig|6666666.229901.peg.1689 CDS AJMG02000024.1 170284 171357 1 + 1074 Chorismate synthase (EC 4.2.3.5) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229901.peg.1690 CDS AJMG02000024.1 171379 172251 1 + 873 Murein endopeptidase - none -
fig|6666666.229901.peg.1691 CDS AJMG02000024.1 172255 173022 1 + 768 Putative membrane protein YfcA - none -
fig|6666666.229901.peg.1692 CDS AJMG02000024.1 173138 174094 2 + 957 Lipid A biosynthesis (KDO) 2-(lauroyl)-lipid IVA acyltransferase (EC 2.3.1.-) - none -
fig|6666666.229901.peg.1693 CDS AJMG02000024.1 174116 174727 2 + 612 Adenine phosphoribosyltransferase (EC 2.4.2.7) Purine conversions;
cAMP signaling in bacteria
fig|6666666.229901.peg.1694 CDS AJMG02000024.1 174760 176805 1 + 2046 DNA polymerase III subunits gamma and tau (EC 2.7.7.7) DNA processing cluster
fig|6666666.229901.peg.1695 CDS AJMG02000024.1 176808 177698 3 + 891 hypothetical protein - none -
fig|6666666.229901.peg.1696 CDS AJMG02000024.1 178024 178794 1 + 771 Glycosyltransferase - none -
fig|6666666.229901.peg.1697 CDS AJMG02000024.1 179468 180313 2 + 846 hypothetical protein - none -
fig|6666666.229901.peg.1698 CDS AJMG02000024.1 180736 180383 -1 - 354 Bona fide RidA/YjgF/TdcF/RutC subgroup - none -
fig|6666666.229901.peg.1699 CDS AJMG02000024.1 180877 181554 1 + 678 FIG00904286: hypothetical protein - none -
fig|6666666.229901.peg.1700 CDS AJMG02000024.1 181560 182270 3 + 711 hypothetical protein - none -
fig|6666666.229901.peg.1701 CDS AJMG02000024.1 182932 182321 -1 - 612 Glutathione S-transferase (EC 2.5.1.18) Glutathione: Non-redox reactions
fig|6666666.229901.peg.1702 CDS AJMG02000024.1 185471 183216 -2 - 2256 Topoisomerase IV subunit A (EC 5.99.1.-) DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.229901.peg.1703 CDS AJMG02000024.1 185655 185479 -3 - 177 hypothetical protein - none -
fig|6666666.229901.peg.1704 CDS AJMG02000024.1 187906 186008 -1 - 1899 Topoisomerase IV subunit B (EC 5.99.1.-) DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.229901.peg.1705 CDS AJMG02000024.1 188409 189296 3 + 888 putative adhesin/invasin - none -
fig|6666666.229901.peg.1706 CDS AJMG02000024.1 191046 189400 -3 - 1647 ABC transporter ATP-binding protein - none -
fig|6666666.229901.peg.1707 CDS AJMG02000024.1 191449 192114 1 + 666 putative exported protein - none -
fig|6666666.229901.peg.1708 CDS AJMG02000024.1 192129 193160 3 + 1032 putative membrane protein - none -
fig|6666666.229901.peg.1709 CDS AJMG02000024.1 193772 195814 2 + 2043 Excinuclease ABC subunit B DNA repair, UvrABC system
fig|6666666.229901.peg.1710 CDS AJMG02000024.1 196041 197111 3 + 1071 Outer membrane protein A precursor Osmoregulation
fig|6666666.229901.peg.1711 CDS AJMG02000024.1 199253 197787 -2 - 1467 PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69) Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism;
Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229901.peg.1712 CDS AJMG02000024.1 200633 199503 -2 - 1131 Sialic acid-induced transmembrane protein YjhT(NanM), possible mutarotase Sialic Acid Metabolism
fig|6666666.229901.peg.1713 CDS AJMG02000024.1 202622 200772 -2 - 1851 TRAP-type transport system, large permease component, predicted N-acetylneuraminate transporter / TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229901.peg.1714 CDS AJMG02000024.1 203672 202686 -2 - 987 TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein Sialic Acid Metabolism
fig|6666666.229901.peg.1715 CDS AJMG02000024.1 203913 204614 3 + 702 N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9) Sialic Acid Metabolism
fig|6666666.229901.peg.1716 CDS AJMG02000024.1 204628 205515 1 + 888 N-acetylmannosamine kinase (EC 2.7.1.60) Sialic Acid Metabolism
fig|6666666.229901.peg.1717 CDS AJMG02000024.1 205525 206394 1 + 870 Sialic acid utilization regulator, RpiR family Sialic Acid Metabolism
fig|6666666.229901.peg.1718 CDS AJMG02000024.1 206404 207282 1 + 879 N-acetylneuraminate lyase (EC 4.1.3.3) Sialic Acid Metabolism
fig|6666666.229901.peg.1719 CDS AJMG02000024.1 207437 208240 2 + 804 Glucosamine-6-phosphate deaminase (EC 3.5.99.6) Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism
fig|6666666.229901.peg.1720 CDS AJMG02000024.1 208296 209441 3 + 1146 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism
fig|6666666.229901.peg.1721 CDS AJMG02000024.1 210146 209646 -2 - 501 Thiol peroxidase, Tpx-type (EC 1.11.1.15) Thioredoxin-disulfide reductase
fig|6666666.229901.peg.1722 CDS AJMG02000024.1 211251 210187 -3 - 1065 Ferrochelatase, protoheme ferro-lyase (EC 4.99.1.1) Heme and Siroheme Biosynthesis
fig|6666666.229901.peg.1723 CDS AJMG02000024.1 211666 211244 -1 - 423 FIG017415: ydiI hotdog fold superfamily - none -
fig|6666666.229901.peg.1724 CDS AJMG02000024.1 214729 211676 -1 - 3054 Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD Glycolate, glyoxylate interconversions
fig|6666666.229901.peg.1725 CDS AJMG02000024.1 215215 216252 1 + 1038 Outer membrane protein A precursor Osmoregulation
fig|6666666.229901.peg.1726 CDS AJMG02000024.1 216594 216923 3 + 330 Glutaredoxin-related protein Glutaredoxins
fig|6666666.229901.peg.1727 CDS AJMG02000024.1 217048 217500 1 + 453 putative membrane protein - none -
fig|6666666.229901.peg.1728 CDS AJMG02000024.1 217501 217890 1 + 390 COG2363 - none -
fig|6666666.229901.peg.1729 CDS AJMG02000024.1 217887 221798 3 + 3912 HrpA-like helicases - none -
fig|6666666.229901.peg.1730 CDS AJMG02000024.1 222106 223158 1 + 1053 putative inner membrane protein - none -
fig|6666666.229901.peg.1731 CDS AJMG02000024.1 223258 224406 1 + 1149 Mobile element protein - none -
fig|6666666.229901.peg.1732 CDS AJMG02000024.1 224434 224592 1 + 159 hypothetical protein - none -
fig|6666666.229901.peg.1733 CDS AJMG02000024.1 225263 224598 -2 - 666 Phosphoglycolate phosphatase (EC 3.1.3.18) 2-phosphoglycolate salvage;
Glycolate, glyoxylate interconversions
fig|6666666.229901.peg.1734 CDS AJMG02000024.1 225902 225591 -2 - 312 Cytochrome C553 (soluble cytochrome f) Iron transport system including ABC transporter;
Soluble cytochromes and functionally related electron carriers
fig|6666666.229901.peg.1735 CDS AJMG02000024.1 226400 225909 -2 - 492 Possible periplasmic thiredoxin Iron transport system including ABC transporter
fig|6666666.229901.peg.1736 CDS AJMG02000024.1 227061 226390 -3 - 672 Fe2+ ABC transporter, ATP-binding subunit Iron transport system including ABC transporter
fig|6666666.229901.peg.1737 CDS AJMG02000024.1 228178 227063 -1 - 1116 Fe2+ ABC transporter, permease protein 2 Iron transport system including ABC transporter
fig|6666666.229901.peg.1738 CDS AJMG02000024.1 229514 228189 -2 - 1326 Cell division protein FtsX Bacterial Cell Division
fig|6666666.229901.peg.1739 CDS AJMG02000024.1 230947 229517 -1 - 1431 Fe2+ ABC transporter, substrate binding protein Iron transport system including ABC transporter
fig|6666666.229901.peg.1740 CDS AJMG02000024.1 231607 231086 -1 - 522 Periplasmic protein p19 involved in high-affinity Fe2+ transport Iron transport system including ABC transporter
fig|6666666.229901.peg.1741 CDS AJMG02000024.1 233557 231650 -1 - 1908 High-affinity Fe2+/Pb2+ permease precursor Iron transport system including ABC transporter
fig|6666666.229901.peg.1742 CDS AJMG02000024.1 236249 233856 -2 - 2394 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) DNA uptake cluster;
Peptidoglycan Biosynthesis;
Type IV pilus
fig|6666666.229901.peg.1743 CDS AJMG02000024.1 236507 236295 -2 - 213 hypothetical protein - none -
fig|6666666.229901.peg.1744 CDS AJMG02000024.1 236850 236509 -3 - 342 probable iron binding protein from the HesB_IscA_SufA family - none -
fig|6666666.229901.peg.1745 CDS AJMG02000024.1 236984 237784 2 + 801 Methionine aminopeptidase (EC 3.4.11.18) CBSS-312309.3.peg.1965;
Translation termination factors bacterial
fig|6666666.229901.peg.1746 CDS AJMG02000024.1 238567 240441 1 + 1875 [Protein-PII] uridylyltransferase (EC 2.7.7.59) Ammonia assimilation;
CBSS-312309.3.peg.1965
fig|6666666.229901.peg.1747 CDS AJMG02000024.1 241800 240517 -3 - 1284 Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8) CBSS-196164.1.peg.461;
Heme and Siroheme Biosynthesis
fig|6666666.229901.peg.1748 CDS AJMG02000024.1 241929 243002 3 + 1074 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) - none -
fig|6666666.229901.peg.1749 CDS AJMG02000025.1 1231 1374 1 + 144 hypothetical protein - none -
fig|6666666.229901.peg.1750 CDS AJMG02000025.1 2281 4515 1 + 2235 DNA internalization-related competence protein ComEC/Rec2 - none -
fig|6666666.229901.peg.1751 CDS AJMG02000025.1 4562 6310 2 + 1749 Lipid A export ATP-binding/permease protein MsbA - none -
fig|6666666.229901.peg.1752 CDS AJMG02000025.1 6329 7303 2 + 975 Tetraacyldisaccharide 4@1-kinase (EC 2.7.1.130) - none -
fig|6666666.229901.peg.1753 CDS AJMG02000025.1 7325 7504 2 + 180 FIG002473: Protein YcaR in KDO2-Lipid A biosynthesis cluster Broadly distributed proteins not in subsystems
fig|6666666.229901.peg.1754 CDS AJMG02000025.1 7506 8279 3 + 774 3-deoxy-manno-octulosonate cytidylyltransferase (EC 2.7.7.38) - none -
fig|6666666.229901.peg.1755 CDS AJMG02000025.1 8418 10247 3 + 1830 Excinuclease ABC subunit C DNA repair, UvrABC system
fig|6666666.229901.peg.1756 CDS AJMG02000025.1 11723 10632 -2 - 1092 Possible ABC transporter, periplasmic substrate X binding protein precursor ABC transporter of unknown substrate X
fig|6666666.229901.peg.1757 CDS AJMG02000025.1 12594 11743 -3 - 852 Putative ABC transporter of substrate X, permease subunit II ABC transporter of unknown substrate X
fig|6666666.229901.peg.1758 CDS AJMG02000025.1 13460 12591 -2 - 870 Putative ABC transporter of substrate X, permease subunit I ABC transporter of unknown substrate X
fig|6666666.229901.peg.1759 CDS AJMG02000025.1 14527 13457 -1 - 1071 Putative ABC transporter of substrate X, ATP-binding subunit ABC transporter of unknown substrate X
fig|6666666.229901.peg.1760 CDS AJMG02000025.1 15874 14765 -1 - 1110 Selenide,water dikinase (EC 2.7.9.3) Selenocysteine metabolism;
tRNA modification Bacteria
fig|6666666.229901.peg.1761 CDS AJMG02000025.1 17234 16386 -2 - 849 filamentation induced by cAMP protein Fic-like protein - none -
fig|6666666.229901.peg.1762 CDS AJMG02000025.1 17703 17864 3 + 162 hypothetical protein - none -
fig|6666666.229901.peg.1763 CDS AJMG02000025.1 18077 17835 -2 - 243 DNA-damage-inducible protein d - none -
fig|6666666.229901.peg.1764 CDS AJMG02000025.1 19682 18258 -2 - 1425 NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) Phosphate metabolism
fig|6666666.229901.peg.1765 CDS AJMG02000025.1 21228 19693 -3 - 1536 NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2) Phosphate metabolism
fig|6666666.229901.peg.1766 CDS AJMG02000025.1 21523 22248 1 + 726 Sugar/maltose fermentation stimulation protein homolog Fermentations: Mixed acid
fig|6666666.229901.peg.1767 CDS AJMG02000025.1 22496 23683 2 + 1188 Tyrosyl-tRNA synthetase (EC 6.1.1.1) tRNA aminoacylation, Tyr
fig|6666666.229901.peg.1768 CDS AJMG02000025.1 24513 24665 3 + 153 hypothetical protein - none -
fig|6666666.229901.peg.1769 CDS AJMG02000025.1 25624 24707 -1 - 918 tRNA pseudouridine synthase B (EC 4.2.1.70) CBSS-138119.3.peg.2719;
RNA pseudouridine syntheses;
Riboflavin, FMN and FAD metabolism in plants;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229901.peg.1770 CDS AJMG02000025.1 26010 25624 -3 - 387 Ribosome-binding factor A CBSS-138119.3.peg.2719;
NusA-TFII Cluster;
Translation initiation factors bacterial
fig|6666666.229901.peg.1771 CDS AJMG02000025.1 29031 26542 -3 - 2490 Translation initiation factor 2 CBSS-138119.3.peg.2719;
NusA-TFII Cluster;
Translation initiation factors bacterial;
Universal GTPases
fig|6666666.229901.peg.1772 CDS AJMG02000025.1 30543 29047 -3 - 1497 Transcription termination protein NusA NusA-TFII Cluster;
Transcription factors bacterial
fig|6666666.229901.peg.1773 CDS AJMG02000025.1 31022 30567 -2 - 456 FIG000325: clustered with transcription termination protein NusA NusA-TFII Cluster;
Transcription factors bacterial
fig|6666666.229901.peg.1774 CDS AJMG02000025.1 31288 32811 1 + 1524 C4-dicarboxylate transporter DcuC (TC 2.A.61.1.1) Citrate Metabolism, Transport, and Regulation
fig|6666666.229901.peg.1775 CDS AJMG02000025.1 32841 33026 3 + 186 hypothetical protein - none -
fig|6666666.229901.peg.1776 CDS AJMG02000025.1 33066 33338 3 + 273 DNA-damage-inducible protein J DNA repair, bacterial;
Toxin-antitoxin replicon stabilization systems
fig|6666666.229901.peg.1777 CDS AJMG02000025.1 33350 33616 2 + 267 YafQ toxin protein Toxin-antitoxin replicon stabilization systems
fig|6666666.229901.peg.1778 CDS AJMG02000025.1 33648 35207 3 + 1560 GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2) Purine conversions
fig|6666666.229901.peg.1779 CDS AJMG02000025.1 35388 36146 3 + 759 Integrase - none -
fig|6666666.229901.peg.1780 CDS AJMG02000025.1 36754 36143 -1 - 612 Phage tail fibers Phage tail fiber proteins
fig|6666666.229901.peg.1781 CDS AJMG02000025.1 37992 36754 -3 - 1239 Phage tail fibers Phage tail fiber proteins
fig|6666666.229901.peg.1782 CDS AJMG02000025.1 38331 38203 -3 - 129 hypothetical protein - none -
fig|6666666.229901.peg.1783 CDS AJMG02000025.1 39454 38303 -1 - 1152 Family of unknown function (DUF450) family - none -
fig|6666666.229901.peg.1784 CDS AJMG02000025.1 39941 40360 2 + 420 hypothetical protein - none -
fig|6666666.229901.peg.1785 CDS AJMG02000025.1 40745 40386 -2 - 360 phage-related protein - none -
fig|6666666.229901.peg.1786 CDS AJMG02000025.1 41016 41192 3 + 177 hypothetical protein - none -
fig|6666666.229901.peg.1787 CDS AJMG02000025.1 42643 41693 -1 - 951 hypothetical protein - none -
fig|6666666.229901.peg.1788 CDS AJMG02000025.1 44425 45378 1 + 954 Acetyl-coenzyme A carboxyl transferase alpha chain (EC 6.4.1.2) Fatty Acid Biosynthesis FASII
fig|6666666.229901.peg.1789 CDS AJMG02000025.1 45441 46298 3 + 858 Pyridoxal kinase (EC 2.7.1.35) Pyridoxin (Vitamin B6) Biosynthesis
fig|6666666.229901.peg.1790 CDS AJMG02000025.1 46330 47676 1 + 1347 tRNA(Ile)-lysidine synthetase (EC 6.3.4.19) Cell division-ribosomal stress proteins cluster;
Folate biosynthesis cluster;
tRNA modification Bacteria;
tRNA processing;
tRNAmodification position 34
fig|6666666.229901.peg.1791 CDS AJMG02000025.1 47829 47704 -3 - 126 Guanine-hypoxanthine permease Purine Utilization
fig|6666666.229901.peg.1792 CDS AJMG02000025.1 48724 47783 -1 - 942 Guanine-hypoxanthine permease Purine Utilization
fig|6666666.229901.peg.1793 CDS AJMG02000025.1 49235 48849 -2 - 387 Integral membrane protein - none -
fig|6666666.229901.peg.1794 CDS AJMG02000025.1 49429 50445 1 + 1017 UDP-glucose 4-epimerase (EC 5.1.3.2) Lactose and Galactose Uptake and Utilization;
Rhamnose containing glycans
fig|6666666.229901.peg.1795 CDS AJMG02000025.1 50451 50792 3 + 342 [NiFe] hydrogenase nickel incorporation protein HybF NiFe hydrogenase maturation
fig|6666666.229901.peg.1796 CDS AJMG02000025.1 50799 52088 3 + 1290 AmpG permease Recycling of Peptidoglycan Amino Acids
fig|6666666.229901.peg.1797 CDS AJMG02000025.1 52221 52865 3 + 645 Adenylate kinase (EC 2.7.4.3) Purine conversions
fig|6666666.229901.peg.1798 CDS AJMG02000025.1 54780 53602 -3 - 1179 N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family Chitin and N-acetylglucosamine utilization
fig|6666666.229901.peg.1799 CDS AJMG02000025.1 56191 54887 -1 - 1305 Glutamyl-tRNA reductase (EC 1.2.1.70) A Gammaproteobacteria Cluster Relating to Translation;
Heme and Siroheme Biosynthesis
fig|6666666.229901.peg.1800 CDS AJMG02000025.1 57077 56376 -2 - 702 Hydroxyacylglutathione hydrolase (EC 3.1.2.6) CBSS-228410.1.peg.134;
CBSS-342610.3.peg.1536;
Glutathione: Non-redox reactions;
Methylglyoxal Metabolism
fig|6666666.229901.peg.1801 CDS AJMG02000025.1 57098 57796 2 + 699 FIG005121: SAM-dependent methyltransferase (EC 2.1.1.-) CBSS-228410.1.peg.134;
CBSS-342610.3.peg.1536;
Glutathione: Non-redox reactions
fig|6666666.229901.peg.1802 CDS AJMG02000025.1 59347 57854 -1 - 1494 PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69) Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism;
Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229901.peg.1803 CDS AJMG02000025.1 59874 59536 -3 - 339 FIG00904093: hypothetical protein - none -
fig|6666666.229901.peg.1804 CDS AJMG02000025.1 60050 61255 2 + 1206 Mannose-6-phosphate isomerase (EC 5.3.1.8) Mannose Metabolism
fig|6666666.229901.peg.1805 CDS AJMG02000025.1 61346 63109 2 + 1764 FIG00696060: hypothetical protein - none -
fig|6666666.229901.peg.1806 CDS AJMG02000025.1 63280 63654 1 + 375 probable membrane protein YPO3565 - none -
fig|6666666.229901.peg.1807 CDS AJMG02000025.1 63818 63651 -2 - 168 hypothetical protein - none -
fig|6666666.229901.peg.1808 CDS AJMG02000025.1 63881 65263 2 + 1383 Outer membrane stress sensor protease DegQ, serine protease Periplasmic Stress Response;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229901.peg.1809 CDS AJMG02000025.1 66365 65361 -2 - 1005 Biotin synthase (EC 2.8.1.6) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229901.peg.1810 CDS AJMG02000025.1 67057 66410 -1 - 648 Thiamin ABC transporter, ATPase component / Thiamine transport ATP-binding protein thiQ Thiamin biosynthesis
fig|6666666.229901.peg.1811 CDS AJMG02000025.1 68612 67041 -2 - 1572 Thiamin ABC transporter, transmembrane component Thiamin biosynthesis
fig|6666666.229901.peg.1812 CDS AJMG02000025.1 69682 68678 -1 - 1005 Thiamin ABC transporter, substrate-binding component Thiamin biosynthesis
fig|6666666.229901.peg.1813 CDS AJMG02000025.1 70084 69704 -1 - 381 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) - none -
fig|6666666.229901.peg.1814 CDS AJMG02000025.1 71069 70776 -2 - 294 CRISPR-associated protein Cas2 CRISPRs
fig|6666666.229901.peg.1815 CDS AJMG02000025.1 72017 71073 -2 - 945 CRISPR-associated protein Cas1 CRISPRs
fig|6666666.229901.peg.1816 CDS AJMG02000025.1 73894 72140 -1 - 1755 predicted ATP-dependent endonuclease, OLD family - none -
fig|6666666.229901.peg.1817 CDS AJMG02000025.1 74390 73884 -2 - 507 CRISPR-associated RecB family exonuclease Cas4 / CRISPR-associated protein Cas1 CRISPRs
fig|6666666.229901.peg.1818 CDS AJMG02000025.1 77202 74896 -3 - 2307 CRISPR-associated protein Cas3@1@1 CRISPRs
fig|6666666.229901.peg.1819 CDS AJMG02000025.1 77624 80557 2 + 2934 Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42) Ammonia assimilation;
CBSS-316057.3.peg.3521
fig|6666666.229901.peg.1820 CDS AJMG02000025.1 80892 80593 -3 - 300 Putative transcriptional regulator - none -
fig|6666666.229901.peg.1821 CDS AJMG02000025.1 81239 80889 -2 - 351 YPPCP.09C homologue - none -
fig|6666666.229901.peg.1822 CDS AJMG02000025.1 83009 81426 -2 - 1584 Peptide chain release factor 3 Translation termination factors bacterial
fig|6666666.229901.peg.1823 CDS AJMG02000025.1 83079 83195 3 + 117 hypothetical protein - none -
fig|6666666.229901.peg.1824 CDS AJMG02000025.1 83366 84193 2 + 828 Nucleoside-diphosphate-sugar epimerases - none -
fig|6666666.229901.peg.1825 CDS AJMG02000025.1 84288 85625 3 + 1338 Argininosuccinate synthase (EC 6.3.4.5) - none -
fig|6666666.229901.peg.1826 CDS AJMG02000025.1 85819 86064 1 + 246 FIG00696862: hypothetical protein - none -
fig|6666666.229901.peg.1827 CDS AJMG02000025.1 86297 88066 2 + 1770 Gamma-glutamyltranspeptidase (EC 2.3.2.2) Glutathione: Biosynthesis and gamma-glutamyl cycle
fig|6666666.229901.peg.1828 CDS AJMG02000025.1 89586 88192 -3 - 1395 Sensory histidine kinase QseC Orphan regulatory proteins
fig|6666666.229901.peg.1829 CDS AJMG02000025.1 90226 89555 -1 - 672 Two-component system response regulator QseB Orphan regulatory proteins
fig|6666666.229901.peg.1830 CDS AJMG02000025.1 90780 90364 -3 - 417 Protein ygiW precursor - none -
fig|6666666.229901.peg.1831 CDS AJMG02000025.1 91205 92065 2 + 861 formate dehydrogenase formation protein FdhE Formate hydrogenase
fig|6666666.229901.peg.1832 CDS AJMG02000025.1 94115 92139 -2 - 1977 2@1,3@1-cyclic-nucleotide 2@1-phosphodiesterase (EC 3.1.4.16) Purine conversions;
pyrimidine conversions
fig|6666666.229901.peg.1833 CDS AJMG02000025.1 94344 95243 3 + 900 Iron compound ABC uptake transporter substrate-binding protein PiuA - none -
fig|6666666.229901.peg.1834 CDS AJMG02000025.1 95303 96268 2 + 966 Ferric anguibactin transport system permease protein fatD - none -
fig|6666666.229901.peg.1835 CDS AJMG02000025.1 96276 97199 3 + 924 Ferric vibriobactin, enterobactin transport system, permease protein VctG (TC 3.A.1.14.6) - none -
fig|6666666.229901.peg.1836 CDS AJMG02000025.1 97211 97969 2 + 759 Iron(III) dicitrate transport ATP-binding protein FecE (TC 3.A.1.14.1) - none -
fig|6666666.229901.peg.1837 CDS AJMG02000025.1 99609 98077 -3 - 1533 Cell wall endopeptidase, family M23/M37 Glutaredoxins
fig|6666666.229901.peg.1838 CDS AJMG02000025.1 99798 100571 3 + 774 Zinc ABC transporter, ATP-binding protein ZnuC - none -
fig|6666666.229901.peg.1839 CDS AJMG02000025.1 100583 101368 2 + 786 Zinc ABC transporter, inner membrane permease protein ZnuB - none -
fig|6666666.229901.peg.1840 CDS AJMG02000025.1 103130 101763 -2 - 1368 sodium-dependent transporter - none -
fig|6666666.229901.peg.1841 CDS AJMG02000025.1 103790 103155 -2 - 636 Endonuclease III (EC 4.2.99.18) DNA Repair Base Excision
fig|6666666.229901.peg.1842 CDS AJMG02000025.1 104722 103937 -1 - 786 Electron transport complex protein RnfE Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229901.peg.1843 CDS AJMG02000025.1 105335 104715 -2 - 621 Electron transport complex protein RnfG Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229901.peg.1844 CDS AJMG02000025.1 106421 105342 -2 - 1080 Electron transport complex protein RnfD Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229901.peg.1845 CDS AJMG02000025.1 108552 106432 -3 - 2121 Electron transport complex protein RnfC Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229901.peg.1846 CDS AJMG02000025.1 109143 108553 -3 - 591 Electron transport complex protein RnfB Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229901.peg.1847 CDS AJMG02000025.1 109724 109143 -2 - 582 Electron transport complex protein RnfA Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229901.peg.1848 CDS AJMG02000025.1 110802 109915 -3 - 888 Cell division inhibitor CBSS-83333.1.peg.946;
Persister Cells
fig|6666666.229901.peg.1849 CDS AJMG02000025.1 111293 110826 -2 - 468 Arginine pathway regulatory protein ArgR, repressor of arg regulon Arginine Deiminase Pathway;
Arginine and Ornithine Degradation
fig|6666666.229901.peg.1850 CDS AJMG02000025.1 111549 112484 3 + 936 Malate dehydrogenase (EC 1.1.1.37) - none -
fig|6666666.229901.peg.1851 CDS AJMG02000025.1 113380 112640 -1 - 741 FIG00698611: hypothetical protein - none -
fig|6666666.229901.peg.1852 CDS AJMG02000025.1 114767 113748 -2 - 1020 Branched-chain amino acid aminotransferase (EC 2.6.1.42) Alanine biosynthesis;
Pyruvate Alanine Serine Interconversions
fig|6666666.229901.peg.1853 CDS AJMG02000025.1 115229 116134 2 + 906 Glycine cleavage system transcriptional activator GcvA LysR-family proteins in Escherichia coli;
Orphan regulatory proteins
fig|6666666.229901.peg.1854 CDS AJMG02000025.1 116154 117215 3 + 1062 LSU rRNA 2@1-O-methyl-C2498 methyltransferase RlmM RNA methylation
fig|6666666.229901.peg.1855 CDS AJMG02000025.1 117332 117784 2 + 453 Ribonucleotide reductase transcriptional regulator NrdR Ribonucleotide reduction
fig|6666666.229901.peg.1856 CDS AJMG02000025.1 117784 118908 1 + 1125 Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster;
Riboflavin synthesis cluster
fig|6666666.229901.peg.1857 CDS AJMG02000025.1 118917 119945 3 + 1029 Outer membrane stress sensor protease DegS Periplasmic Stress Response;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229901.peg.1858 CDS AJMG02000025.1 119954 120550 2 + 597 Nucleotidase YfbR, HD superfamily Housecleaning nucleoside triphosphate pyrophosphatases
fig|6666666.229901.peg.1859 CDS AJMG02000025.1 121960 120617 -1 - 1344 Arsenic efflux pump protein Arsenic resistance
fig|6666666.229901.peg.1860 CDS AJMG02000025.1 122960 122181 -2 - 780 DNA-binding domain of ModE / Molybdate-binding domain of ModE Molybdenum cofactor biosynthesis;
Molybdenum cofactor biosynthesis
fig|6666666.229901.peg.1861 CDS AJMG02000025.1 123187 123951 1 + 765 Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229901.peg.1862 CDS AJMG02000025.1 124029 124757 3 + 729 Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229901.peg.1863 CDS AJMG02000025.1 124744 125805 1 + 1062 Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229901.peg.1864 CDS AJMG02000025.1 127440 125950 -3 - 1491 Cytosol aminopeptidase PepA (EC 3.4.11.1) Aminopeptidases (EC 3.4.11.-);
CBSS-208964.1.peg.3826;
Dehydrogenase complexes
fig|6666666.229901.peg.1865 CDS AJMG02000025.1 127577 128695 2 + 1119 FIG000988: Predicted permease CBSS-208964.1.peg.3826
fig|6666666.229901.peg.1866 CDS AJMG02000025.1 128700 129767 3 + 1068 FIG000906: Predicted Permease CBSS-208964.1.peg.3826
fig|6666666.229901.peg.1867 CDS AJMG02000025.1 129942 130826 3 + 885 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) 5-FCL-like protein;
Methionine Biosynthesis;
One-carbon metabolism by tetrahydropterines
fig|6666666.229901.peg.1868 CDS AJMG02000025.1 130976 131791 2 + 816 Shikimate 5-dehydrogenase I gamma (EC 1.1.1.25) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229901.peg.1869 CDS AJMG02000025.1 133734 133582 -3 - 153 hypothetical protein - none -
fig|6666666.229901.peg.1870 CDS AJMG02000025.1 134769 133756 -3 - 1014 [NiFe] hydrogenase metallocenter assembly protein HypE G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229901.peg.1871 CDS AJMG02000025.1 135881 134769 -2 - 1113 [NiFe] hydrogenase metallocenter assembly protein HypD G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229901.peg.1872 CDS AJMG02000025.1 136717 135908 -1 - 810 [NiFe] hydrogenase nickel incorporation-associated protein HypB G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229901.peg.1873 CDS AJMG02000025.1 137419 136796 -1 - 624 ATPase component NikO of energizing module of nickel ECF transporter ECF class transporters;
Transport of Nickel and Cobalt
fig|6666666.229901.peg.1874 CDS AJMG02000025.1 138081 137416 -3 - 666 Transmembrane component NikQ of energizing module of nickel ECF transporter ECF class transporters;
Transport of Nickel and Cobalt
fig|6666666.229901.peg.1875 CDS AJMG02000025.1 138731 138078 -2 - 654 Substrate-specific component NikM of nickel ECF transporter ECF class transporters;
Transport of Nickel and Cobalt
fig|6666666.229901.peg.1876 CDS AJMG02000025.1 139234 138731 -1 - 504 Additional component NikL of nickel ECF transporter Transport of Nickel and Cobalt
fig|6666666.229901.peg.1877 CDS AJMG02000025.1 139936 139241 -1 - 696 Additional periplasmic component NikK of nickel ECF transporter Transport of Nickel and Cobalt
fig|6666666.229901.peg.1878 CDS AJMG02000025.1 140807 140115 -2 - 693 5@1-methylthioadenosine nucleosidase (EC 3.2.2.16) / S-adenosylhomocysteine nucleosidase (EC 3.2.2.9) Adenosyl nucleosidases;
Adenosyl nucleosidases;
Methionine Biosynthesis;
Methionine Degradation;
Polyamine Metabolism
fig|6666666.229901.peg.1879 CDS AJMG02000025.1 141471 140824 -3 - 648 Thiol-disulfide isomerase and thioredoxins - none -
fig|6666666.229901.peg.1880 CDS AJMG02000025.1 143225 141504 -2 - 1722 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) DNA Repair Base Excision;
DNA repair, bacterial RecFOR pathway
fig|6666666.229901.peg.1881 CDS AJMG02000025.1 143921 143238 -2 - 684 Thiol:disulfide interchange protein DsbC Periplasmic disulfide interchange
fig|6666666.229901.peg.1882 CDS AJMG02000025.1 144005 144166 2 + 162 hypothetical protein - none -
fig|6666666.229901.peg.1883 CDS AJMG02000025.1 144285 145187 3 + 903 Peptide chain release factor 2; programmed frameshift-containing Programmed frameshift;
Programmed frameshift;
Translation termination factors bacterial
fig|6666666.229901.peg.1884 CDS AJMG02000025.1 145244 146752 2 + 1509 Lysyl-tRNA synthetase (class II) (EC 6.1.1.6) tRNA aminoacylation, Lys
fig|6666666.229901.peg.1885 CDS AJMG02000025.1 146942 147367 2 + 426 6-carboxytetrahydropterin synthase (EC 4.1.2.50) @ Queuosine biosynthesis QueD, PTPS-I Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229901.peg.1886 CDS AJMG02000025.1 147328 148002 1 + 675 Queuosine Biosynthesis QueE Radical SAM Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229901.peg.1887 CDS AJMG02000025.1 148227 148982 3 + 756 FIG137478: Hypothetical protein YbgI - none -
fig|6666666.229901.peg.1888 CDS AJMG02000025.1 149073 149861 3 + 789 Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9) Fatty Acid Biosynthesis FASII
fig|6666666.229901.peg.1889 CDS AJMG02000025.1 149934 151913 3 + 1980 Exoribonuclease II (EC 3.1.13.1) RNA processing and degradation, bacterial
fig|6666666.229901.peg.1890 CDS AJMG02000025.1 152514 152032 -3 - 483 Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1) Oxidative stress;
Oxidative stress;
Oxidative stress
fig|6666666.229901.peg.1891 CDS AJMG02000025.1 152723 153883 2 + 1161 Membrane fusion component of tripartite multidrug resistance system Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria
fig|6666666.229901.peg.1892 CDS AJMG02000025.1 153893 155410 2 + 1518 Inner membrane component of tripartite multidrug resistance system Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria
fig|6666666.229901.peg.1893 CDS AJMG02000025.1 155554 155835 1 + 282 HipB protein Persister Cells
fig|6666666.229901.peg.1894 CDS AJMG02000025.1 155885 156223 2 + 339 HipA protein Persister Cells
fig|6666666.229901.peg.1895 CDS AJMG02000025.1 156217 156333 1 + 117 HipA protein Persister Cells
fig|6666666.229901.peg.1896 CDS AJMG02000025.1 157345 156452 -1 - 894 hypothetical protein - none -
fig|6666666.229901.peg.1897 CDS AJMG02000025.1 160276 157412 -1 - 2865 Valyl-tRNA synthetase (EC 6.1.1.9) CBSS-208964.1.peg.3826;
tRNA aminoacylation, Val
fig|6666666.229901.peg.1898 CDS AJMG02000025.1 161124 160975 -3 - 150 RNA-binding domain protein - none -
fig|6666666.229901.peg.1899 CDS AJMG02000025.1 161280 161152 -3 - 129 RNA-binding domain protein - none -
fig|6666666.229901.peg.1900 CDS AJMG02000025.1 161768 161319 -2 - 450 DNA polymerase III chi subunit (EC 2.7.7.7) CBSS-208964.1.peg.3826
fig|6666666.229901.peg.1901 CDS AJMG02000025.1 161978 163372 2 + 1395 Fumarate hydratase class II (EC 4.2.1.2) - none -
fig|6666666.229901.peg.1902 CDS AJMG02000025.1 163477 164082 1 + 606 FIG026291: Hypothetical periplasmic protein - none -
fig|6666666.229901.peg.1903 CDS AJMG02000025.1 164325 164134 -3 - 192 hypothetical protein - none -
fig|6666666.229901.peg.1904 CDS AJMG02000025.1 165283 164378 -1 - 906 Ribosomal protein S6 glutaminyl transferase Ribosome biogenesis bacterial
fig|6666666.229901.peg.1905 CDS AJMG02000025.1 166036 165302 -1 - 735 Oxygen-insensitive NADPH nitroreductase (EC 1.-.-.-) - none -
fig|6666666.229901.peg.1906 CDS AJMG02000025.1 166163 166426 2 + 264 Glutaredoxin 1 Glutaredoxins;
Glutathione: Redox cycle
fig|6666666.229901.peg.1907 CDS AJMG02000025.1 166875 166681 -3 - 195 Beta-galactosidase (EC 3.2.1.23) Galactosylceramide and Sulfatide metabolism;
Lactose and Galactose Uptake and Utilization;
Lactose utilization
fig|6666666.229901.peg.1908 CDS AJMG02000025.1 167170 168384 1 + 1215 Tyrosine-specific transport protein - none -
fig|6666666.229901.peg.1909 CDS AJMG02000025.1 169162 168467 -1 - 696 L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) L-ascorbate utilization (and related gene clusters)
fig|6666666.229901.peg.1910 CDS AJMG02000025.1 170016 169156 -3 - 861 L-xylulose 5-phosphate 3-epimerase (EC 5.1.3.-) L-ascorbate utilization (and related gene clusters)
fig|6666666.229901.peg.1911 CDS AJMG02000025.1 170806 170057 -1 - 750 Ascorbate utilization transcriptional regulator UlaR, HTH-type L-ascorbate utilization (and related gene clusters)
fig|6666666.229901.peg.1912 CDS AJMG02000025.1 171989 170898 -2 - 1092 Probable L-ascorbate-6-phosphate lactonase UlaG (EC 3.1.1.-) (L-ascorbate utilization protein G) L-ascorbate utilization (and related gene clusters)
fig|6666666.229901.peg.1913 CDS AJMG02000025.1 172337 174109 2 + 1773 Ascorbate-specific PTS system, EIIC component L-ascorbate utilization (and related gene clusters)
fig|6666666.229901.peg.1914 CDS AJMG02000025.1 174164 174625 2 + 462 Ascorbate-specific PTS system, EIIA component (EC 2.7.1.-) L-ascorbate utilization (and related gene clusters)
fig|6666666.229901.peg.1915 CDS AJMG02000025.1 174702 175376 3 + 675 3-keto-L-gulonate 6-phosphate decarboxylase L-ascorbate utilization (and related gene clusters)
fig|6666666.229901.peg.1916 CDS AJMG02000025.1 177843 175486 -3 - 2358 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) DNA uptake cluster;
Peptidoglycan Biosynthesis;
Type IV pilus
fig|6666666.229901.peg.1917 CDS AJMG02000025.1 179012 177963 -2 - 1050 Putative membrane protein YeiH - none -
fig|6666666.229901.peg.1918 CDS AJMG02000025.1 184913 179142 -2 - 5772 FIG00904191: hypothetical protein - none -
fig|6666666.229901.peg.1919 CDS AJMG02000025.1 186412 184964 -1 - 1449 TldD protein, part of TldE/TldD proteolytic complex CBSS-354.1.peg.2917;
Putative TldE-TldD proteolytic complex
fig|6666666.229901.peg.1920 CDS AJMG02000025.1 186635 186489 -2 - 147 hypothetical protein - none -
fig|6666666.229901.peg.1921 CDS AJMG02000025.1 187568 186708 -2 - 861 Molybdenum transport system protein ModD Molybdenum cofactor biosynthesis
fig|6666666.229901.peg.1922 CDS AJMG02000025.1 187912 187565 -1 - 348 ABC transporter ATP-binding protein - none -
fig|6666666.229901.peg.1923 CDS AJMG02000025.1 188175 187915 -3 - 261 ABC transporter ATP-binding protein - none -
fig|6666666.229901.peg.1924 CDS AJMG02000025.1 188531 188178 -2 - 354 Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229901.peg.1925 CDS AJMG02000025.1 189741 188947 -3 - 795 possible DNA-binding protein - none -
fig|6666666.229901.peg.1926 CDS AJMG02000025.1 189862 190128 1 + 267 FIG00697940: hypothetical protein - none -
fig|6666666.229901.peg.1927 CDS AJMG02000025.1 191299 190151 -1 - 1149 ATPase provides energy for both assembly of type IV secretion complex and secretion of T-DNA complex (VirB4) - none -
fig|6666666.229901.peg.1928 CDS AJMG02000027.1 351 491 3 + 141 hypothetical protein - none -
fig|6666666.229901.peg.1929 CDS AJMG02000027.1 1251 1135 -3 - 117 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229901.peg.1930 CDS AJMG02000027.1 1685 1458 -2 - 228 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229901.peg.1931 CDS AJMG02000028.1 1512 85 -3 - 1428 Exodeoxyribonuclease I (EC 3.1.11.1) DNA Repair Base Excision
fig|6666666.229901.peg.1932 CDS AJMG02000028.1 2396 1524 -2 - 873 Integral membrane protein - none -
fig|6666666.229901.peg.1933 CDS AJMG02000028.1 3545 2472 -2 - 1074 Chromosome partition protein MukB DNA structural proteins, bacterial;
MukBEF Chromosome Condensation
fig|6666666.229901.peg.1934 CDS AJMG02000028.1 9017 8277 -2 - 741 Chromosome partition protein MukE DNA structural proteins, bacterial;
MukBEF Chromosome Condensation
fig|6666666.229901.peg.1935 CDS AJMG02000028.1 9226 9038 -1 - 189 hypothetical protein - none -
fig|6666666.229901.peg.1936 CDS AJMG02000028.1 12495 9217 -3 - 3279 Putative 2-acylglycerophosphoethanolamine acyltransferase / acyl-acyl carrier protein synthetase (EC 6.2.1.20) - none -
fig|6666666.229901.peg.1937 CDS AJMG02000028.1 12494 12610 2 + 117 hypothetical protein - none -
fig|6666666.229901.peg.1938 CDS AJMG02000028.1 13994 12666 -2 - 1329 Chromosome partition protein MukF DNA structural proteins, bacterial;
MukBEF Chromosome Condensation
fig|6666666.229901.peg.1939 CDS AJMG02000028.1 15052 14174 -1 - 879 Murein-DD-endopeptidase (EC 3.4.99.-) Peptidoglycan Biosynthesis
fig|6666666.229901.peg.1940 CDS AJMG02000028.1 15829 15227 -1 - 603 lipoprotein HlpB - none -
fig|6666666.229901.peg.1941 CDS AJMG02000028.1 16265 15978 -2 - 288 LSU ribosomal protein L25p Ribosome LSU bacterial;
Transcription repair cluster
fig|6666666.229901.peg.1942 CDS AJMG02000028.1 16479 17084 3 + 606 DedA protein DedA family of inner membrane proteins;
Uptake of selenate and selenite
fig|6666666.229901.peg.1943 CDS AJMG02000028.1 17038 17178 1 + 141 hypothetical protein - none -
fig|6666666.229901.peg.1944 CDS AJMG02000028.1 19668 17203 -3 - 2466 Glycogen phosphorylase (EC 2.4.1.1) Glycogen metabolism;
Glycogen metabolism cluster;
Maltose and Maltodextrin Utilization
fig|6666666.229901.peg.1945 CDS AJMG02000028.1 21231 19792 -3 - 1440 Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21) Glycogen metabolism;
Glycogen metabolism cluster
fig|6666666.229901.peg.1946 CDS AJMG02000028.1 22743 21433 -3 - 1311 Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27) Glycogen metabolism;
Glycogen metabolism cluster
fig|6666666.229901.peg.1947 CDS AJMG02000028.1 24779 22770 -2 - 2010 Glycogen debranching enzyme (EC 3.2.1.-) Glycogen metabolism;
Glycogen metabolism cluster
fig|6666666.229901.peg.1948 CDS AJMG02000028.1 26971 24776 -1 - 2196 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) Glycogen metabolism;
Glycogen metabolism cluster
fig|6666666.229901.peg.1949 CDS AJMG02000028.1 27528 26968 -3 - 561 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) Glycogen metabolism;
Glycogen metabolism cluster;
Maltose and Maltodextrin Utilization;
Maltose utilization cluster
fig|6666666.229901.peg.1950 CDS AJMG02000028.1 28062 27628 -3 - 435 YcgN (Fragment) CBSS-243277.1.peg.4359
fig|6666666.229901.peg.1951 CDS AJMG02000028.1 29825 28134 -2 - 1692 Glutaminyl-tRNA synthetase (EC 6.1.1.18) tRNA aminoacylation, Glu and Gln
fig|6666666.229901.peg.1952 CDS AJMG02000028.1 30026 31210 2 + 1185 Macrolide-specific efflux protein MacA Multidrug Resistance Efflux Pumps
fig|6666666.229901.peg.1953 CDS AJMG02000028.1 31230 33164 3 + 1935 Macrolide export ATP-binding/permease protein MacB (EC 3.6.3.-) Multidrug Resistance Efflux Pumps
fig|6666666.229901.peg.1954 CDS AJMG02000028.1 33241 34614 1 + 1374 RND efflux system, outer membrane lipoprotein CmeC Multidrug Resistance Efflux Pumps
fig|6666666.229901.peg.1955 CDS AJMG02000028.1 36428 34887 -2 - 1542 Esterase/lipase - none -
fig|6666666.229901.peg.1956 CDS AJMG02000028.1 37325 37056 -2 - 270 hypothetical protein - none -
fig|6666666.229901.peg.1957 CDS AJMG02000028.1 37892 39283 2 + 1392 hypothetical protein - none -
fig|6666666.229901.peg.1958 CDS AJMG02000028.1 39962 39639 -2 - 324 Alkylphosphonate utilization operon protein PhnA - none -
fig|6666666.229901.peg.1959 CDS AJMG02000028.1 40908 40045 -3 - 864 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229901.peg.1960 CDS AJMG02000028.1 41420 40953 -2 - 468 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses;
Ribosome biogenesis bacterial;
tRNA modification Bacteria
fig|6666666.229901.peg.1961 CDS AJMG02000028.1 41631 41428 -3 - 204 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses;
Ribosome biogenesis bacterial;
tRNA modification Bacteria
fig|6666666.229901.peg.1962 CDS AJMG02000028.1 41762 42658 2 + 897 Putative surface protein - none -
fig|6666666.229901.peg.1963 CDS AJMG02000028.1 42684 44141 3 + 1458 Cardiolipin synthetase (EC 2.7.8.-) Cardiolipin synthesis;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229901.peg.1964 CDS AJMG02000028.1 44203 44844 1 + 642 Hypothetical, related to broad specificity phosphatases COG0406 CBSS-196164.1.peg.461
fig|6666666.229901.peg.1965 CDS AJMG02000028.1 46247 44901 -2 - 1347 Dihydrofolate synthase (EC 6.3.2.12) @ Folylpolyglutamate synthase (EC 6.3.2.17) Folate Biosynthesis;
Folate Biosynthesis
fig|6666666.229901.peg.1966 CDS AJMG02000028.1 47166 46270 -3 - 897 Acetyl-coenzyme A carboxyl transferase beta chain (EC 6.4.1.2) Fatty Acid Biosynthesis FASII
fig|6666666.229901.peg.1967 CDS AJMG02000028.1 47391 47636 3 + 246 Exodeoxyribonuclease VII small subunit (EC 3.1.11.6) DNA repair, bacterial;
Purine salvage cluster
fig|6666666.229901.peg.1968 CDS AJMG02000028.1 47647 48537 1 + 891 Octaprenyl diphosphate synthase (EC 2.5.1.90) / Dimethylallyltransferase (EC 2.5.1.1) / (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10) / Geranylgeranyl diphosphate synthase (EC 2.5.1.29) Isoprenoid Biosynthesis;
Isoprenoid Biosynthesis;
Isoprenoid Biosynthesis: Interconversions;
Isoprenoinds for Quinones;
Isoprenoinds for Quinones;
Isoprenoinds for Quinones;
Isoprenoinds for Quinones;
Polyprenyl Diphosphate Biosynthesis;
Polyprenyl Diphosphate Biosynthesis;
Polyprenyl Diphosphate Biosynthesis
fig|6666666.229901.peg.1969 CDS AJMG02000028.1 48622 50472 1 + 1851 1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis;
Pyridoxin (Vitamin B6) Biosynthesis;
Thiamin biosynthesis
fig|6666666.229901.peg.1970 CDS AJMG02000028.1 51350 50592 -2 - 759 Galactitol utilization operon repressor - none -
fig|6666666.229901.peg.1971 CDS AJMG02000028.1 51813 51511 -3 - 303 Tagatose-6-phosphate kinase GatZ (EC 2.7.1.144) - none -
fig|6666666.229901.peg.1972 CDS AJMG02000028.1 52133 51810 -2 - 324 Tagatose 1,6-diphosphate aldolase (EC 4.1.2.40) Lactose and Galactose Uptake and Utilization
fig|6666666.229901.peg.1973 CDS AJMG02000028.1 52224 52343 3 + 120 hypothetical protein - none -
fig|6666666.229901.peg.1974 CDS AJMG02000028.1 53512 53625 1 + 114 hypothetical protein - none -
fig|6666666.229901.peg.1975 CDS AJMG02000028.1 54027 53674 -3 - 354 LSU ribosomal protein L20p Ribosome LSU bacterial
fig|6666666.229901.peg.1976 CDS AJMG02000028.1 54358 54501 1 + 144 hypothetical protein - none -
fig|6666666.229901.peg.1977 CDS AJMG02000028.1 54981 54502 -3 - 480 Translation initiation factor 3 Translation initiation factors bacterial
fig|6666666.229901.peg.1978 CDS AJMG02000028.1 55356 56135 3 + 780 Ferredoxin--NADP(+) reductase (EC 1.18.1.2) Biogenesis of cytochrome c oxidases
fig|6666666.229901.peg.1979 CDS AJMG02000028.1 56250 56113 -3 - 138 hypothetical protein - none -
fig|6666666.229901.peg.1980 CDS AJMG02000028.1 56551 56252 -1 - 300 Type III restriction-modification system restriction subunit (EC 3.1.21.5) - none -
fig|6666666.229901.peg.1981 CDS AJMG02000028.1 57282 56554 -3 - 729 Type III restriction-modification system restriction subunit (EC 3.1.21.5) - none -
fig|6666666.229901.peg.1982 CDS AJMG02000028.1 57773 57327 -2 - 447 Type III restriction-modification system methylation subunit (EC 2.1.1.72) Restriction-Modification System
fig|6666666.229901.peg.1983 CDS AJMG02000028.1 59950 58019 -1 - 1932 Threonyl-tRNA synthetase (EC 6.1.1.3) tRNA aminoacylation, Thr
fig|6666666.229901.peg.1984 CDS AJMG02000028.1 60191 61066 2 + 876 Ribulosamine/erythrulosamine 3-kinase potentially involved in protein deglycation Protein deglycation
fig|6666666.229901.peg.1985 CDS AJMG02000028.1 61946 61125 -2 - 822 Outer membrane protein A precursor Osmoregulation
fig|6666666.229901.peg.1986 CDS AJMG02000028.1 63194 62136 -2 - 1059 Possible protease sohB (EC 3.4.21.-) - none -
fig|6666666.229901.peg.1987 CDS AJMG02000028.1 63387 63977 3 + 591 FMN-dependent NADH-azoreductase - none -
fig|6666666.229901.peg.1988 CDS AJMG02000028.1 65417 64080 -2 - 1338 NADH dehydrogenase (EC 1.6.99.3) Respiratory dehydrogenases 1;
Riboflavin synthesis cluster
fig|6666666.229901.peg.1989 CDS AJMG02000028.1 67183 65594 -1 - 1590 Glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Respiratory dehydrogenases 1
fig|6666666.229901.peg.1990 CDS AJMG02000028.1 68301 67453 -3 - 849 rRNA small subunit methyltransferase I 16S rRNA modification within P site of ribosome;
CBSS-160492.1.peg.550;
Heat shock dnaK gene cluster extended
fig|6666666.229901.peg.1991 CDS AJMG02000028.1 68378 70102 2 + 1725 LppC putative lipoprotein CBSS-160492.1.peg.550
fig|6666666.229901.peg.1992 CDS AJMG02000028.1 70103 70471 2 + 369 Predicted endonuclease distantly related to archaeal Holliday junction resolvase CBSS-160492.1.peg.550
fig|6666666.229901.peg.1993 CDS AJMG02000028.1 70484 71068 2 + 585 Phosphoheptose isomerase (EC 5.3.1.-) CBSS-160492.1.peg.550;
Capsular heptose biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.229901.peg.1994 CDS AJMG02000028.1 71133 71720 3 + 588 21 kDa hemolysin precursor CBSS-160492.1.peg.550
fig|6666666.229901.peg.1995 CDS AJMG02000028.1 72518 71826 -2 - 693 Carbonic anhydrase (EC 4.2.1.1) - none -
fig|6666666.229901.peg.1996 CDS AJMG02000028.1 72734 73804 2 + 1071 Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11) / Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) Cluster Ytf and putative sugar transporter;
Peptide methionine sulfoxide reductase;
Peptide methionine sulfoxide reductase;
Putative sugar ABC transporter (ytf cluster)
fig|6666666.229901.peg.1997 CDS AJMG02000028.1 73808 74449 2 + 642 Cytochrome c-type biogenesis protein CcdA homolog, associated with MetSO reductase Peptide methionine sulfoxide reductase
fig|6666666.229901.peg.1998 CDS AJMG02000028.1 74464 74946 1 + 483 Thiol:disulfide oxidoreductase associated with MetSO reductase Peptide methionine sulfoxide reductase
fig|6666666.229901.peg.1999 CDS AJMG02000028.1 75963 76082 3 + 120 FIG00697497: hypothetical protein - none -
fig|6666666.229901.peg.2000 CDS AJMG02000028.1 76375 76118 -1 - 258 FIG00699498: hypothetical protein - none -
fig|6666666.229901.peg.2001 CDS AJMG02000028.1 77210 78196 2 + 987 Fructose repressor FruR, LacI family Fructose utilization
fig|6666666.229901.peg.2002 CDS AJMG02000028.1 78893 78180 -2 - 714 SanA protein - none -
fig|6666666.229901.peg.2003 CDS AJMG02000028.1 79086 80189 3 + 1104 Homoserine O-acetyltransferase (EC 2.3.1.31) Methionine Biosynthesis
fig|6666666.229901.peg.2004 CDS AJMG02000028.1 80495 81493 2 + 999 Purine nucleotide synthesis repressor Purine nucleotide synthesis regulator
fig|6666666.229901.peg.2005 CDS AJMG02000028.1 81796 81930 1 + 135 hypothetical protein - none -
fig|6666666.229901.peg.2006 CDS AJMG02000028.1 81964 82284 1 + 321 putative cytoplasmic protein - none -
fig|6666666.229901.peg.2007 CDS AJMG02000028.1 83226 82399 -3 - 828 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229901.peg.2008 CDS AJMG02000028.1 84282 83311 -3 - 972 Cys regulon transcriptional activator CysB Cysteine Biosynthesis;
LysR-family proteins in Escherichia coli
fig|6666666.229901.peg.2009 CDS AJMG02000028.1 85280 84294 -2 - 987 Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70) RNA pseudouridine syntheses
fig|6666666.229901.peg.2010 CDS AJMG02000028.1 85958 85335 -2 - 624 Hypothetical YciO protein, TsaC/YrdC paralog YrdC-YciO-Sua5 protein family
fig|6666666.229901.peg.2011 CDS AJMG02000028.1 87156 86032 -3 - 1125 Chorismate mutase I (EC 5.4.99.5) / Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) Chorismate Synthesis;
Chorismate Synthesis;
Phenylalanine and Tyrosine Branches from Chorismate;
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229901.peg.2012 CDS AJMG02000028.1 89077 87197 -1 - 1881 Signal peptide peptidase SppA (EC 3.4.21.-) - none -
fig|6666666.229901.peg.2013 CDS AJMG02000028.1 89201 89755 2 + 555 FIG002003: Protein YdjA - none -
fig|6666666.229901.peg.2014 CDS AJMG02000028.1 89980 90099 1 + 120 hypothetical protein - none -
fig|6666666.229901.peg.2015 CDS AJMG02000028.1 91666 90185 -1 - 1482 Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4) 5-FCL-like protein;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229901.peg.2016 CDS AJMG02000028.1 93373 91703 -1 - 1671 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) 5-FCL-like protein;
Dehydrogenase complexes;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229901.peg.2017 CDS AJMG02000028.1 96059 93402 -2 - 2658 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) 5-FCL-like protein;
Dehydrogenase complexes;
Methionine Degradation;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229901.peg.2018 CDS AJMG02000028.1 96453 97313 3 + 861 Tellurite resistance protein TehB Tellurite resistance: Chromosomal determinants
fig|6666666.229901.peg.2019 CDS AJMG02000028.1 100180 97466 -1 - 2715 Transcriptional activator of maltose regulon, MalT Maltose and Maltodextrin Utilization;
Maltose utilization cluster
fig|6666666.229901.peg.2020 CDS AJMG02000028.1 100349 102739 2 + 2391 Maltodextrin phosphorylase (EC 2.4.1.1) Glycogen metabolism;
Maltose and Maltodextrin Utilization;
Maltose utilization cluster
fig|6666666.229901.peg.2021 CDS AJMG02000028.1 102842 104917 2 + 2076 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) Glycogen metabolism;
Glycogen metabolism cluster;
Maltose and Maltodextrin Utilization;
Maltose utilization cluster
fig|6666666.229901.peg.2022 CDS AJMG02000028.1 104939 105064 2 + 126 hypothetical protein - none -
fig|6666666.229901.peg.2023 CDS AJMG02000028.1 105603 105061 -3 - 543 Colicin V production protein - none -
fig|6666666.229901.peg.2024 CDS AJMG02000028.1 106225 105782 -1 - 444 FIG00638298: membrane protein YfbV - none -
fig|6666666.229901.peg.2025 CDS AJMG02000028.1 153072 154133 3 + 1062 Acetate kinase (EC 2.7.2.1) Fermentations: Lactate;
Fermentations: Mixed acid;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229901.peg.2026 CDS AJMG02000028.1 154203 156338 3 + 2136 Phosphate acetyltransferase (EC 2.3.1.8) Fermentations: Lactate;
Fermentations: Mixed acid;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229901.peg.2027 CDS AJMG02000028.1 156685 157047 1 + 363 hypothetical protein - none -
fig|6666666.229901.peg.2028 CDS AJMG02000028.1 157618 157118 -1 - 501 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) Folate Biosynthesis;
Folate biosynthesis cluster
fig|6666666.229901.peg.2029 CDS AJMG02000028.1 157961 157611 -2 - 351 Poly(A) polymerase (EC 2.7.7.19) Polyadenylation bacterial
fig|6666666.229901.rna.1 RNA AJMG02000001.1 62260 62346 1 + 87 tRNA-Ser-GGA tRNAs
fig|6666666.229901.rna.2 RNA AJMG02000001.1 80965 80893 -1 - 73 tRNA-Trp-CCA tRNAs
fig|6666666.229901.rna.3 RNA AJMG02000001.1 81076 81003 -1 - 74 tRNA-Asp-GTC - none -
fig|6666666.229901.rna.4 RNA AJMG02000001.1 81202 81083 -1 - 120 5S RNA - none -
fig|6666666.229901.rna.5 RNA AJMG02000002.1 189 3231 3 + 3043 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA - none -
fig|6666666.229901.rna.6 RNA AJMG02000002.1 3486 3601 3 + 116 5S RNA - none -
fig|6666666.229901.rna.7 RNA AJMG02000003.1 20488 20560 1 + 73 tRNA-Phe-GAA tRNAs
fig|6666666.229901.rna.8 RNA AJMG02000003.1 20568 20640 3 + 73 tRNA-Asn-GTT - none -
fig|6666666.229901.rna.9 RNA AJMG02000004.1 7927 7844 -1 - 84 tRNA-Leu-CAG tRNAs
fig|6666666.229901.rna.10 RNA AJMG02000004.1 37670 37588 -2 - 83 tRNA-Leu-GAG tRNAs
fig|6666666.229901.rna.11 RNA AJMG02000004.1 109735 109808 1 + 74 tRNA-Met-CAT - none -
fig|6666666.229901.rna.12 RNA AJMG02000004.1 138713 138785 2 + 73 tRNA-Thr-TGT - none -
fig|6666666.229901.rna.13 RNA AJMG02000004.1 138819 138900 3 + 82 tRNA-Tyr-GTA - none -
fig|6666666.229901.rna.14 RNA AJMG02000004.1 138944 139015 2 + 72 tRNA-Gly-TCC - none -
fig|6666666.229901.rna.15 RNA AJMG02000004.1 139022 139094 2 + 73 tRNA-Thr-GGT - none -
fig|6666666.229901.rna.16 RNA AJMG02000005.1 48648 48576 -3 - 73 tRNA-Lys-TTT - none -
fig|6666666.229901.rna.17 RNA AJMG02000005.1 48787 48704 -1 - 84 tRNA-Leu-TAA - none -
fig|6666666.229901.rna.18 RNA AJMG02000005.1 48864 48792 -3 - 73 tRNA-Gly-GCC tRNAs
fig|6666666.229901.rna.19 RNA AJMG02000006.1 79714 79804 1 + 91 tRNA-SeC(p)-TCA - none -
fig|6666666.229901.rna.20 RNA AJMG02000007.1 161 1700 2 + 1540 Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA - none -
fig|6666666.229901.rna.21 RNA AJMG02000008.1 27298 27388 1 + 91 tRNA-Ser-GCT - none -
fig|6666666.229901.rna.22 RNA AJMG02000008.1 27409 27482 1 + 74 tRNA-Arg-ACG tRNAs
fig|6666666.229901.rna.23 RNA AJMG02000008.1 27540 27613 3 + 74 tRNA-Arg-ACG tRNAs
fig|6666666.229901.rna.24 RNA AJMG02000012.1 111870 111798 -3 - 73 tRNA-Ala-GGC tRNAs
fig|6666666.229901.rna.25 RNA AJMG02000012.1 113680 113752 1 + 73 tRNA-Val-TAC - none -
fig|6666666.229901.rna.26 RNA AJMG02000012.1 113794 113866 1 + 73 tRNA-Val-TAC - none -
fig|6666666.229901.rna.27 RNA AJMG02000012.1 113897 113969 2 + 73 tRNA-Val-TAC - none -
fig|6666666.229901.rna.28 RNA AJMG02000016.1 5140 5067 -1 - 74 tRNA-Met-CAT - none -
fig|6666666.229901.rna.29 RNA AJMG02000019.1 20029 20102 1 + 74 tRNA-Asp-GTC - none -
fig|6666666.229901.rna.30 RNA AJMG02000019.1 20128 20201 1 + 74 tRNA-Asp-GTC - none -
fig|6666666.229901.rna.31 RNA AJMG02000019.1 62212 62139 -1 - 74 tRNA-Lys-CTT - none -
fig|6666666.229901.rna.32 RNA AJMG02000019.1 62313 62241 -3 - 73 tRNA-Lys-TTT - none -
fig|6666666.229901.rna.33 RNA AJMG02000019.1 62415 62343 -3 - 73 tRNA-Lys-TTT - none -
fig|6666666.229901.rna.34 RNA AJMG02000019.1 156445 156359 -1 - 87 tRNA-Ser-TGA - none -
fig|6666666.229901.rna.35 RNA AJMG02000019.1 163800 163872 3 + 73 tRNA-Gly-GCC tRNAs
fig|6666666.229901.rna.36 RNA AJMG02000019.1 163884 163954 3 + 71 tRNA-Cys-GCA tRNAs
fig|6666666.229901.rna.37 RNA AJMG02000020.1 22230 22158 -3 - 73 tRNA-Gly-GCC tRNAs
fig|6666666.229901.rna.38 RNA AJMG02000021.1 8214 8287 3 + 74 tRNA-Pro-TGG - none -
fig|6666666.229901.rna.39 RNA AJMG02000021.1 8324 8397 2 + 74 tRNA-Arg-TCT - none -
fig|6666666.229901.rna.40 RNA AJMG02000023.1 21858 21931 3 + 74 tRNA-Val-GAC tRNAs
fig|6666666.229901.rna.41 RNA AJMG02000024.1 117352 117270 -1 - 83 tRNA-Leu-CAA tRNAs
fig|6666666.229901.rna.42 RNA AJMG02000024.1 193368 193296 -3 - 73 tRNA-Asn-GTT - none -
fig|6666666.229901.rna.43 RNA AJMG02000024.1 243169 243242 1 + 74 tRNA-Arg-CCG tRNAs
fig|6666666.229901.rna.44 RNA AJMG02000024.1 243277 243349 1 + 73 tRNA-His-GTG - none -
fig|6666666.229901.rna.45 RNA AJMG02000024.1 243355 243428 1 + 74 tRNA-Pro-TGG - none -
fig|6666666.229901.rna.46 RNA AJMG02000025.1 31254 31181 -3 - 74 tRNA-Met-CAT - none -
fig|6666666.229901.rna.47 RNA AJMG02000025.1 53057 52986 -2 - 72 tRNA-Gln-TTG - none -
fig|6666666.229901.rna.48 RNA AJMG02000025.1 53169 53098 -3 - 72 tRNA-Gln-TTG - none -
fig|6666666.229901.rna.49 RNA AJMG02000025.1 53283 53202 -3 - 82 tRNA-Leu-TAG - none -
fig|6666666.229901.rna.50 RNA AJMG02000025.1 53365 53292 -1 - 74 tRNA-Met-CAT - none -
fig|6666666.229901.rna.51 RNA AJMG02000026.1 96 169 3 + 74 tRNA-Ile-GAT - none -
fig|6666666.229901.rna.52 RNA AJMG02000026.1 222 294 3 + 73 tRNA-Ala-TGC - none -