fig|6666666.229902.peg.1 CDS CP003099.1 76 294 1 + 219 hypothetical protein - none -
fig|6666666.229902.peg.2 CDS CP003099.1 903 619 -3 - 285 hypothetical protein - none -
fig|6666666.229902.peg.3 CDS CP003099.1 1067 900 -2 - 168 hypothetical protein - none -
fig|6666666.229902.peg.4 CDS CP003099.1 1327 1461 1 + 135 hypothetical protein - none -
fig|6666666.229902.peg.5 CDS CP003099.1 1486 1776 1 + 291 Chromosome (plasmid) partitioning protein ParA Bacterial Cell Division;
Bacterial Cytoskeleton;
Cell Division Subsystem including YidCD;
RNA modification and chromosome partitioning cluster
fig|6666666.229902.peg.6 CDS CP003099.1 1865 2128 2 + 264 Chromosome (plasmid) partitioning protein ParA Bacterial Cell Division;
Bacterial Cytoskeleton;
Cell Division Subsystem including YidCD;
RNA modification and chromosome partitioning cluster
fig|6666666.229902.peg.7 CDS CP003099.1 2121 2360 3 + 240 hypothetical protein - none -
fig|6666666.229902.peg.8 CDS CP003099.1 2499 2702 3 + 204 filamentation induced by cAMP protein Fic-like protein - none -
fig|6666666.229902.peg.9 CDS CP003099.1 3336 2869 -3 - 468 Type II secretory pathway, component PulJ - none -
fig|6666666.229902.peg.10 CDS CP003099.1 4410 3943 -3 - 468 18K peptidoglycan-associated outer membrane lipoprotein; Peptidoglycan-associated lipoprotein precursor; Outer membrane protein P6; OmpA/MotB precursor Ton and Tol transport systems
fig|6666666.229902.peg.11 CDS CP003099.1 5705 4425 -2 - 1281 tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins Ton and Tol transport systems
fig|6666666.229902.peg.12 CDS CP003099.1 6948 5740 -3 - 1209 TolA protein Ton and Tol transport systems
fig|6666666.229902.peg.13 CDS CP003099.1 7387 6965 -1 - 423 Tol biopolymer transport system, TolR protein Ton and Tol transport systems
fig|6666666.229902.peg.14 CDS CP003099.1 8162 7473 -2 - 690 MotA/TolQ/ExbB proton channel family protein Ton and Tol transport systems
fig|6666666.229902.peg.15 CDS CP003099.1 8596 8192 -1 - 405 4-hydroxybenzoyl-CoA thioesterase family active site Ton and Tol transport systems
fig|6666666.229902.peg.16 CDS CP003099.1 8661 8780 3 + 120 hypothetical protein - none -
fig|6666666.229902.peg.17 CDS CP003099.1 10241 9105 -2 - 1137 Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229902.peg.18 CDS CP003099.1 10741 10256 -1 - 486 Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229902.peg.19 CDS CP003099.1 11738 10794 -2 - 945 Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229902.peg.20 CDS CP003099.1 12274 12585 1 + 312 Chromosome segregation ATPases - none -
fig|6666666.229902.peg.21 CDS CP003099.1 13652 12639 -2 - 1014 Holliday junction DNA helicase RuvB RuvABC plus a hypothetical
fig|6666666.229902.peg.22 CDS CP003099.1 14281 13667 -1 - 615 Holliday junction DNA helicase RuvA RuvABC plus a hypothetical
fig|6666666.229902.peg.23 CDS CP003099.1 14917 14345 -1 - 573 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) RuvABC plus a hypothetical
fig|6666666.229902.peg.24 CDS CP003099.1 15383 14973 -2 - 411 excinuclease ABC subunit A - none -
fig|6666666.229902.peg.25 CDS CP003099.1 16135 15395 -1 - 741 FIG000859: hypothetical protein YebC Riboflavin, FMN and FAD metabolism in plants;
RuvABC plus a hypothetical
fig|6666666.229902.peg.26 CDS CP003099.1 16540 16169 -1 - 372 Dihydroneopterin triphosphate pyrophosphohydrolase type 2 (nudB) Folate Biosynthesis
fig|6666666.229902.peg.27 CDS CP003099.1 17989 16721 -1 - 1269 Mn2+ and Fe2+ transporters of the NRAMP family - none -
fig|6666666.229902.peg.28 CDS CP003099.1 18207 18347 3 + 141 hypothetical protein - none -
fig|6666666.229902.peg.29 CDS CP003099.1 20159 18381 -2 - 1779 Aspartyl-tRNA synthetase (EC 6.1.1.12) tRNA aminoacylation, Asp and Asn
fig|6666666.229902.peg.30 CDS CP003099.1 20367 20894 3 + 528 membrane protein, putative - none -
fig|6666666.229902.peg.31 CDS CP003099.1 20966 21691 2 + 726 tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229902.peg.32 CDS CP003099.1 23359 21770 -1 - 1590 FIG00362583: hypothetical protein - none -
fig|6666666.229902.peg.33 CDS CP003099.1 23670 23347 -3 - 324 FIG00362583: hypothetical protein - none -
fig|6666666.229902.peg.34 CDS CP003099.1 24047 23652 -2 - 396 FIG00362583: hypothetical protein - none -
fig|6666666.229902.peg.35 CDS CP003099.1 24334 24053 -1 - 282 FIG00362583: hypothetical protein - none -
fig|6666666.229902.peg.36 CDS CP003099.1 25559 24477 -2 - 1083 Glycerol-3-phosphate transporter - none -
fig|6666666.229902.peg.37 CDS CP003099.1 25809 25570 -3 - 240 Glycerol-3-phosphate transporter - none -
fig|6666666.229902.peg.38 CDS CP003099.1 26210 28162 2 + 1953 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229902.peg.39 CDS CP003099.1 28321 28728 1 + 408 Lactoylglutathione lyase (EC 4.4.1.5) Glutathione: Non-redox reactions;
Methylglyoxal Metabolism
fig|6666666.229902.peg.40 CDS CP003099.1 28815 29468 3 + 654 Ribonuclease T (EC 3.1.13.-) tRNA processing
fig|6666666.229902.peg.41 CDS CP003099.1 29820 31172 3 + 1353 Histidine permease YuiF - none -
fig|6666666.229902.peg.42 CDS CP003099.1 31236 31802 3 + 567 Primosomal replication protein N@1@1 - none -
fig|6666666.229902.peg.43 CDS CP003099.1 33283 31859 -1 - 1425 tRNA-i(6)A37 methylthiotransferase Methylthiotransferases;
tRNA-methylthiotransferase containing cluster;
tRNA modification Archaea;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229902.peg.44 CDS CP003099.1 33391 33519 1 + 129 hypothetical protein - none -
fig|6666666.229902.peg.45 CDS CP003099.1 33627 33770 3 + 144 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-) CBSS-87626.3.peg.3639;
Ubiquinone Biosynthesis
fig|6666666.229902.peg.46 CDS CP003099.1 35215 34484 -1 - 732 FIG053235: Diacylglucosamine hydrolase like Llipid A biosynthesis cluster
fig|6666666.229902.peg.47 CDS CP003099.1 36188 35217 -2 - 972 Octaprenyl diphosphate synthase (EC 2.5.1.90) Isoprenoinds for Quinones;
Polyprenyl Diphosphate Biosynthesis
fig|6666666.229902.peg.48 CDS CP003099.1 36454 36765 1 + 312 LSU ribosomal protein L21p CBSS-176279.3.peg.868
fig|6666666.229902.peg.49 CDS CP003099.1 36786 37043 3 + 258 LSU ribosomal protein L27p CBSS-176279.3.peg.868
fig|6666666.229902.peg.50 CDS CP003099.1 37115 38047 2 + 933 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229902.peg.51 CDS CP003099.1 38125 39042 1 + 918 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229902.peg.52 CDS CP003099.1 39079 40260 1 + 1182 GTP-binding protein Obg CBSS-176279.3.peg.868;
Universal GTPases
fig|6666666.229902.peg.53 CDS CP003099.1 40376 40257 -2 - 120 tmRNA-binding protein SmpB Heat shock dnaK gene cluster extended;
Translation termination factors bacterial
fig|6666666.229902.peg.54 CDS CP003099.1 40809 40363 -3 - 447 tmRNA-binding protein SmpB Heat shock dnaK gene cluster extended;
Translation termination factors bacterial
fig|6666666.229902.peg.55 CDS CP003099.1 41154 41017 -3 - 138 hypothetical protein - none -
fig|6666666.229902.peg.56 CDS CP003099.1 41177 42802 2 + 1626 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229902.peg.57 CDS CP003099.1 42903 43823 3 + 921 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229902.peg.58 CDS CP003099.1 43833 44771 3 + 939 Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229902.peg.59 CDS CP003099.1 44781 45764 3 + 984 Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229902.peg.60 CDS CP003099.1 45761 46759 2 + 999 Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229902.peg.61 CDS CP003099.1 47572 46865 -1 - 708 Aerobic respiration control protein arcA - none -
fig|6666666.229902.peg.62 CDS CP003099.1 47974 47834 -1 - 141 LSU ribosomal protein L36p - none -
fig|6666666.229902.peg.63 CDS CP003099.1 48250 47984 -1 - 267 LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-independent - none -
fig|6666666.229902.peg.64 CDS CP003099.1 49031 48462 -2 - 570 Lysine decarboxylase family - none -
fig|6666666.229902.peg.65 CDS CP003099.1 49174 50964 1 + 1791 Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8) Biogenesis of c-type cytochromes;
Periplasmic disulfide interchange
fig|6666666.229902.peg.66 CDS CP003099.1 51043 51432 1 + 390 INTEGRAL MEMBRANE PROTEIN (Rhomboid family) - none -
fig|6666666.229902.peg.67 CDS CP003099.1 52256 51831 -2 - 426 Ribonuclease E (EC 3.1.26.12) RNA processing and degradation, bacterial;
Ribosome biogenesis bacterial
fig|6666666.229902.peg.68 CDS CP003099.1 54712 52253 -1 - 2460 Ribonuclease E (EC 3.1.26.12) RNA processing and degradation, bacterial;
Ribosome biogenesis bacterial
fig|6666666.229902.peg.69 CDS CP003099.1 54955 55077 1 + 123 hypothetical protein - none -
fig|6666666.229902.peg.70 CDS CP003099.1 55187 56146 2 + 960 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) RNA pseudouridine syntheses;
Ribosome biogenesis bacterial
fig|6666666.229902.peg.71 CDS CP003099.1 56561 56346 -2 - 216 Thioredoxin - none -
fig|6666666.229902.peg.72 CDS CP003099.1 57763 56768 -1 - 996 D-lactate dehydrogenase (EC 1.1.1.28) Fermentations: Lactate;
Fermentations: Mixed acid
fig|6666666.229902.peg.73 CDS CP003099.1 58917 57787 -3 - 1131 Cystathionine gamma-synthase (EC 2.5.1.48) Methionine Biosynthesis
fig|6666666.229902.peg.74 CDS CP003099.1 59897 60610 2 + 714 Peptidoglycan hydrolase VirB1, involved in T-DNA transfer - none -
fig|6666666.229902.peg.75 CDS CP003099.1 60711 61601 3 + 891 Forms the bulk of type IV secretion complex that spans outer membrane and periplasm (VirB9) - none -
fig|6666666.229902.peg.76 CDS CP003099.1 61612 62883 1 + 1272 Inner membrane protein forms channel for type IV secretion of T-DNA complex (VirB10) - none -
fig|6666666.229902.peg.77 CDS CP003099.1 62883 63938 3 + 1056 ATPase required for both assembly of type IV secretion complex and secretion of T-DNA complex, VirB11 - none -
fig|6666666.229902.peg.78 CDS CP003099.1 63940 64065 1 + 126 hypothetical protein - none -
fig|6666666.229902.peg.79 CDS CP003099.1 66024 66200 3 + 177 hypothetical protein - none -
fig|6666666.229902.peg.80 CDS CP003099.1 67105 67464 1 + 360 hypothetical protein - none -
fig|6666666.229902.peg.81 CDS CP003099.1 69444 68299 -3 - 1146 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) Proline Synthesis
fig|6666666.229902.peg.82 CDS CP003099.1 70226 69567 -2 - 660 putative membrane protein - none -
fig|6666666.229902.peg.83 CDS CP003099.1 70423 70307 -1 - 117 hypothetical protein - none -
fig|6666666.229902.peg.84 CDS CP003099.1 70438 71244 1 + 807 Permeases of the drug/metabolite transporter (DMT) superfamily - none -
fig|6666666.229902.peg.85 CDS CP003099.1 72513 71506 -3 - 1008 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) Cluster Ytf and putative sugar transporter;
Glycolysis and Gluconeogenesis;
Putative sugar ABC transporter (ytf cluster)
fig|6666666.229902.peg.86 CDS CP003099.1 72671 74044 2 + 1374 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (EC 6.3.2.-) Peptidoglycan biosynthesis--gjo;
Recycling of Peptidoglycan Amino Acids
fig|6666666.229902.peg.87 CDS CP003099.1 74424 75542 3 + 1119 Membrane-bound lytic murein transglycosylase A precursor (EC 3.2.1.-) Murein Hydrolases
fig|6666666.229902.peg.88 CDS CP003099.1 75542 76312 2 + 771 HesA/MoeB/ThiF family protein related to EC-YgdL - none -
fig|6666666.229902.peg.89 CDS CP003099.1 76412 77431 2 + 1020 Zinc ABC transporter, periplasmic-binding protein ZnuA - none -
fig|6666666.229902.peg.90 CDS CP003099.1 77559 78371 3 + 813 Outer membrane lipoprotein e (P4) / NMN 5@1-nucleotidase, extracellular (EC 3.1.3.5) NAD and NADP cofactor biosynthesis global
fig|6666666.229902.peg.91 CDS CP003099.1 78941 78450 -2 - 492 FIG001943: hypothetical protein YajQ Broadly distributed proteins not in subsystems
fig|6666666.229902.peg.92 CDS CP003099.1 79896 78952 -3 - 945 Phosphoserine phosphatase (EC 3.1.3.3) Glycine and Serine Utilization;
Serine Biosynthesis;
Serine Biosynthesis
fig|6666666.229902.peg.93 CDS CP003099.1 79972 80649 1 + 678 Lipoate-protein ligase A Lipoic acid metabolism
fig|6666666.229902.peg.94 CDS CP003099.1 80725 80606 -1 - 120 hypothetical protein - none -
fig|6666666.229902.peg.95 CDS CP003099.1 81022 80759 -1 - 264 SSU ribosomal protein S20p - none -
fig|6666666.229902.peg.96 CDS CP003099.1 81290 82867 2 + 1578 Proposed peptidoglycan lipid II flippase MurJ Peptidoglycan lipid II flippase
fig|6666666.229902.peg.97 CDS CP003099.1 82945 83871 1 + 927 Riboflavin kinase (EC 2.7.1.26) / FMN adenylyltransferase (EC 2.7.7.2) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin, FMN and FAD metabolism in plants;
riboflavin to FAD;
riboflavin to FAD
fig|6666666.229902.peg.98 CDS CP003099.1 84085 84255 1 + 171 FIG01055344: hypothetical protein - none -
fig|6666666.229902.peg.99 CDS CP003099.1 84288 87110 3 + 2823 Isoleucyl-tRNA synthetase (EC 6.1.1.5) tRNA aminoacylation, Ile
fig|6666666.229902.peg.100 CDS CP003099.1 87223 87684 1 + 462 Lipoprotein signal peptidase (EC 3.4.23.36) Lipoprotein Biosynthesis;
Signal peptidase
fig|6666666.229902.peg.101 CDS CP003099.1 87684 88628 3 + 945 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.229902.peg.102 CDS CP003099.1 90391 89093 -1 - 1299 Cell division trigger factor (EC 5.2.1.8) Bacterial Cell Division
fig|6666666.229902.peg.103 CDS CP003099.1 91448 90555 -2 - 894 Tyrosine recombinase XerD - none -
fig|6666666.229902.peg.104 CDS CP003099.1 92611 91451 -1 - 1161 Probable 3-phenylpropionic acid transporter - none -
fig|6666666.229902.peg.105 CDS CP003099.1 92724 92611 -3 - 114 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) A Hypothetical Protein Related to Proline Metabolism;
CBSS-630.2.peg.3360;
Proline Synthesis
fig|6666666.229902.peg.106 CDS CP003099.1 93167 92709 -2 - 459 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) A Hypothetical Protein Related to Proline Metabolism;
CBSS-630.2.peg.3360;
Proline Synthesis
fig|6666666.229902.peg.107 CDS CP003099.1 93230 94135 2 + 906 DNA recombination-dependent growth factor C DNA repair, bacterial
fig|6666666.229902.peg.108 CDS CP003099.1 94600 94226 -1 - 375 opacity associated protein - none -
fig|6666666.229902.peg.109 CDS CP003099.1 95975 94662 -2 - 1314 Cell envelope opacity-associated protein A - none -
fig|6666666.229902.peg.110 CDS CP003099.1 97177 96146 -1 - 1032 Lysyl-lysine 2,3-aminomutase Translation elongation factor P lysylation
fig|6666666.229902.peg.111 CDS CP003099.1 97242 97763 3 + 522 Translation elongation factor P Translation elongation factor P lysylation;
Translation elongation factors bacterial
fig|6666666.229902.peg.112 CDS CP003099.1 98091 99467 3 + 1377 Tryptophanase (EC 4.1.99.1) - none -
fig|6666666.229902.peg.113 CDS CP003099.1 99629 100843 2 + 1215 Tyrosine-specific transport protein - none -
fig|6666666.229902.peg.114 CDS CP003099.1 101289 100909 -3 - 381 YheO-like PAS domain - none -
fig|6666666.229902.peg.115 CDS CP003099.1 101586 101374 -3 - 213 YheO-like PAS domain - none -
fig|6666666.229902.peg.116 CDS CP003099.1 102155 101649 -2 - 507 Arabinose efflux permease - none -
fig|6666666.229902.peg.117 CDS CP003099.1 102879 102148 -3 - 732 UDP-2,3-diacylglucosamine diphosphatase (EC 3.6.1.54) KDO2-Lipid A biosynthesis;
Llipid A biosynthesis cluster
fig|6666666.229902.peg.118 CDS CP003099.1 102990 103733 3 + 744 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229902.peg.119 CDS CP003099.1 103741 104592 1 + 852 Putative cell division protein precursor - none -
fig|6666666.229902.peg.120 CDS CP003099.1 104583 104759 3 + 177 Putative cell division protein precursor - none -
fig|6666666.229902.peg.121 CDS CP003099.1 104731 105150 1 + 420 Putative cell division protein precursor - none -
fig|6666666.229902.peg.122 CDS CP003099.1 106084 105221 -1 - 864 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229902.peg.123 CDS CP003099.1 106966 106226 -1 - 741 Pyruvate formate-lyase activating enzyme (EC 1.97.1.4) Fermentations: Mixed acid
fig|6666666.229902.peg.124 CDS CP003099.1 109423 107111 -1 - 2313 Pyruvate formate-lyase (EC 2.3.1.54) Butanol Biosynthesis;
Fermentations: Mixed acid
fig|6666666.229902.peg.125 CDS CP003099.1 110343 109522 -3 - 822 Formate efflux transporter (TC 2.A.44 family) Fermentations: Mixed acid
fig|6666666.229902.peg.126 CDS CP003099.1 110683 111033 1 + 351 Bis(5@1-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17) pyrimidine conversions
fig|6666666.229902.peg.127 CDS CP003099.1 111034 111387 1 + 354 Predicted periplasmic lipoprotein - none -
fig|6666666.229902.peg.128 CDS CP003099.1 111389 112435 2 + 1047 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) Murein Hydrolases;
Recycling of Peptidoglycan Amino Sugars
fig|6666666.229902.peg.129 CDS CP003099.1 112437 113579 3 + 1143 23S rRNA (Uracil-5-) -methyltransferase rumB (EC 2.1.1.-) RNA methylation
fig|6666666.229902.peg.130 CDS CP003099.1 114644 113679 -2 - 966 6-phosphofructokinase (EC 2.7.1.11) D-Tagatose and Galactitol Utilization;
Glycolysis and Gluconeogenesis
fig|6666666.229902.peg.131 CDS CP003099.1 115266 114706 -3 - 561 Cobalt-zinc-cadmium resistance protein Cobalt-zinc-cadmium resistance
fig|6666666.229902.peg.132 CDS CP003099.1 115628 115290 -2 - 339 Cobalt-zinc-cadmium resistance protein Cobalt-zinc-cadmium resistance
fig|6666666.229902.peg.133 CDS CP003099.1 116194 115628 -1 - 567 FIG00696199: hypothetical protein - none -
fig|6666666.229902.peg.134 CDS CP003099.1 116975 116196 -2 - 780 UPF0246 protein YaaA - none -
fig|6666666.229902.peg.135 CDS CP003099.1 117665 116997 -2 - 669 Uracil-DNA glycosylase, family 1 DNA Repair Base Excision;
Uracil-DNA glycosylase
fig|6666666.229902.peg.136 CDS CP003099.1 117950 118333 2 + 384 Pyruvate formate-lyase (EC 2.3.1.54) Butanol Biosynthesis;
Fermentations: Mixed acid
fig|6666666.229902.peg.137 CDS CP003099.1 118497 120293 3 + 1797 Translation elongation factor LepA Heat shock dnaK gene cluster extended;
Translation elongation factors bacterial;
Universal GTPases
fig|6666666.229902.peg.138 CDS CP003099.1 120304 121326 1 + 1023 Signal peptidase I (EC 3.4.21.89) CBSS-176299.4.peg.1292;
Signal peptidase
fig|6666666.229902.peg.139 CDS CP003099.1 121333 122013 1 + 681 Ribonuclease III (EC 3.1.26.3) CBSS-176299.4.peg.1292;
RNA processing and degradation, bacterial
fig|6666666.229902.peg.140 CDS CP003099.1 122010 122918 3 + 909 GTP-binding protein Era Bacterial Cell Division;
CBSS-176299.4.peg.1292;
Glycyl-tRNA synthetase containing cluster;
Universal GTPases;
tRNA modification Archaea
fig|6666666.229902.peg.141 CDS CP003099.1 124377 123022 -3 - 1356 GTPase and tRNA-U34 5-formylation enzyme TrmE Cell Division Subsystem including YidCD;
RNA modification and chromosome partitioning cluster;
RNA modification cluster;
Universal GTPases;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229902.peg.142 CDS CP003099.1 126094 124505 -1 - 1590 Inner membrane protein translocase component YidC, long form CTP synthase (EC 6.3.4.2) cluster;
Cell Division Subsystem including YidCD;
RNA modification cluster
fig|6666666.229902.peg.143 CDS CP003099.1 126399 126136 -3 - 264 Protein YidD Cell Division Subsystem including YidCD;
RNA modification cluster
fig|6666666.229902.peg.144 CDS CP003099.1 126689 126354 -2 - 336 Ribonuclease P protein component (EC 3.1.26.5) Cell Division Subsystem including YidCD;
RNA modification cluster;
tRNA processing
fig|6666666.229902.peg.145 CDS CP003099.1 126869 126735 -2 - 135 LSU ribosomal protein L34p Cell Division Subsystem including YidCD;
RNA modification cluster
fig|6666666.229902.peg.146 CDS CP003099.1 127286 128647 2 + 1362 Chromosomal replication initiator protein DnaA Cell Division Subsystem including YidCD;
DNA replication cluster 1
fig|6666666.229902.peg.147 CDS CP003099.1 128655 129758 3 + 1104 DNA polymerase III beta subunit (EC 2.7.7.7) Cell Division Subsystem including YidCD;
DNA replication cluster 1
fig|6666666.229902.peg.148 CDS CP003099.1 129762 130838 3 + 1077 DNA recombination and repair protein RecF Cell Division Subsystem including YidCD;
DNA repair, bacterial RecFOR pathway;
DNA replication cluster 1
fig|6666666.229902.peg.149 CDS CP003099.1 131640 130885 -3 - 756 Ubiquinone/menaquinone biosynthesis methyltransferase UbiE (EC 2.1.1.-) Menaquinone and Phylloquinone Biosynthesis;
Ubiquinone Biosynthesis
fig|6666666.229902.peg.150 CDS CP003099.1 131828 132403 2 + 576 Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1) Oxidative stress;
Protection from Reactive Oxygen Species
fig|6666666.229902.peg.151 CDS CP003099.1 132470 132844 2 + 375 Mobile element protein - none -
fig|6666666.229902.peg.152 CDS CP003099.1 132841 133647 1 + 807 Mobile element protein - none -
fig|6666666.229902.peg.153 CDS CP003099.1 134108 133857 -2 - 252 Transcriptional regulator, XRE family - none -
fig|6666666.229902.peg.154 CDS CP003099.1 134259 135896 3 + 1638 NAD-dependent malic enzyme (EC 1.1.1.38) Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229902.peg.155 CDS CP003099.1 137315 136116 -2 - 1200 NAD(FAD)-utilizing dehydrogenases - none -
fig|6666666.229902.peg.156 CDS CP003099.1 138361 137312 -1 - 1050 Cytochrome c-type heme lyase subunit nrfF, nitrite reductase complex assembly - none -
fig|6666666.229902.peg.157 CDS CP003099.1 138888 138358 -3 - 531 Putative thiol:disulfide oxidoreductase, nitrite reductase complex assembly - none -
fig|6666666.229902.peg.158 CDS CP003099.1 140791 138881 -1 - 1911 Cytochrome c-type heme lyase subunit nrfE, nitrite reductase complex assembly - none -
fig|6666666.229902.peg.159 CDS CP003099.1 140931 141161 3 + 231 hypothetical protein - none -
fig|6666666.229902.peg.160 CDS CP003099.1 141347 141132 -2 - 216 hypothetical protein - none -
fig|6666666.229902.peg.161 CDS CP003099.1 142344 141379 -3 - 966 NrfD protein - none -
fig|6666666.229902.peg.162 CDS CP003099.1 142964 142341 -2 - 624 NrfC protein - none -
fig|6666666.229902.peg.163 CDS CP003099.1 143680 143015 -1 - 666 Cytochrome c-type protein NrfB precursor - none -
fig|6666666.229902.peg.164 CDS CP003099.1 145277 143754 -2 - 1524 Cytochrome c552 precursor (EC 1.7.2.2) Soluble cytochromes and functionally related electron carriers
fig|6666666.229902.peg.165 CDS CP003099.1 146143 145853 -1 - 291 hypothetical protein - none -
fig|6666666.229902.peg.166 CDS CP003099.1 146634 146161 -3 - 474 Parvulin-like peptidyl-prolyl isomerase - none -
fig|6666666.229902.peg.167 CDS CP003099.1 146784 146662 -3 - 123 hypothetical protein - none -
fig|6666666.229902.peg.168 CDS CP003099.1 147842 146919 -2 - 924 Cytochrome c heme lyase subunit CcmH Biogenesis of c-type cytochromes;
Copper homeostasis
fig|6666666.229902.peg.169 CDS CP003099.1 148294 147842 -1 - 453 Cytochrome c heme lyase subunit CcmL Biogenesis of c-type cytochromes
fig|6666666.229902.peg.170 CDS CP003099.1 148269 148409 3 + 141 Electron transport complex protein RnfE Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229902.peg.171 CDS CP003099.1 148937 148392 -2 - 546 Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase Biogenesis of c-type cytochromes;
Periplasmic disulfide interchange
fig|6666666.229902.peg.172 CDS CP003099.1 150924 148966 -3 - 1959 Cytochrome c heme lyase subunit CcmF Biogenesis of c-type cytochromes;
Copper homeostasis
fig|6666666.229902.peg.173 CDS CP003099.1 151442 150924 -2 - 519 Cytochrome c-type biogenesis protein CcmE, heme chaperone Biogenesis of c-type cytochromes
fig|6666666.229902.peg.174 CDS CP003099.1 151645 151439 -1 - 207 Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE Biogenesis of c-type cytochromes
fig|6666666.229902.peg.175 CDS CP003099.1 152400 151663 -3 - 738 Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE Biogenesis of c-type cytochromes
fig|6666666.229902.peg.176 CDS CP003099.1 153076 152411 -1 - 666 ABC transporter involved in cytochrome c biogenesis, CcmB subunit Biogenesis of c-type cytochromes
fig|6666666.229902.peg.177 CDS CP003099.1 153716 153081 -2 - 636 ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA Biogenesis of c-type cytochromes
fig|6666666.229902.peg.178 CDS CP003099.1 154032 153865 -3 - 168 hypothetical protein - none -
fig|6666666.229902.peg.179 CDS CP003099.1 155080 153983 -1 - 1098 Bicyclomycin resistance protein - none -
fig|6666666.229902.peg.180 CDS CP003099.1 155786 155085 -2 - 702 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses
fig|6666666.229902.peg.181 CDS CP003099.1 155828 156010 2 + 183 hypothetical protein - none -
fig|6666666.229902.peg.182 CDS CP003099.1 156003 158267 3 + 2265 NADP-dependent malic enzyme (EC 1.1.1.40) Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229902.peg.183 CDS CP003099.1 158411 159055 2 + 645 Manganese superoxide dismutase (EC 1.15.1.1) Oxidative stress;
Protection from Reactive Oxygen Species
fig|6666666.229902.peg.184 CDS CP003099.1 159466 160257 1 + 792 putative lipoprotein - none -
fig|6666666.229902.peg.185 CDS CP003099.1 161288 160461 -2 - 828 YpfJ protein, zinc metalloprotease superfamily Broadly distributed proteins not in subsystems
fig|6666666.229902.peg.186 CDS CP003099.1 161428 161871 1 + 444 FIG00904084: hypothetical protein - none -
fig|6666666.229902.peg.187 CDS CP003099.1 162557 161961 -2 - 597 Acyl-phosphate:glycerol-3-phosphate O-acyltransferase PlsY Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229902.peg.188 CDS CP003099.1 162654 163007 3 + 354 Dihydroneopterin aldolase (EC 4.1.2.25) Folate Biosynthesis;
Folate biosynthesis cluster
fig|6666666.229902.peg.189 CDS CP003099.1 163028 164458 2 + 1431 Transglycosylase, Slt family - none -
fig|6666666.229902.peg.190 CDS CP003099.1 164469 164615 3 + 147 hypothetical protein - none -
fig|6666666.229902.peg.191 CDS CP003099.1 165197 164658 -2 - 540 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation Biogenesis of c-type cytochromes;
Periplasmic disulfide interchange
fig|6666666.229902.peg.192 CDS CP003099.1 166765 165221 -1 - 1545 Na+/H+ antiporter NhaB - none -
fig|6666666.229902.peg.193 CDS CP003099.1 166960 167733 1 + 774 Transcriptional regulator for fatty acid degradation FadR, GntR family - none -
fig|6666666.229902.peg.194 CDS CP003099.1 169025 167811 -2 - 1215 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229902.peg.195 CDS CP003099.1 169142 170446 2 + 1305 Menaquinone-specific isochorismate synthase (EC 5.4.4.2) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229902.peg.196 CDS CP003099.1 170437 172143 1 + 1707 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase (EC 2.2.1.9) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229902.peg.197 CDS CP003099.1 172196 172945 2 + 750 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase (EC 4.2.99.20) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229902.peg.198 CDS CP003099.1 173041 173310 1 + 270 SSU ribosomal protein S15p (S13e) - none -
fig|6666666.229902.peg.199 CDS CP003099.1 173518 174672 1 + 1155 S-adenosylmethionine synthetase (EC 2.5.1.6) Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229902.peg.200 CDS CP003099.1 174741 175241 3 + 501 Protein sprT - none -
fig|6666666.229902.peg.201 CDS CP003099.1 175398 176639 3 + 1242 Serine transporter Glycine and Serine Utilization;
Pyruvate Alanine Serine Interconversions
fig|6666666.229902.peg.202 CDS CP003099.1 176732 178096 2 + 1365 L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17) Glycine and Serine Utilization;
Glycine and Serine Utilization;
Pyruvate Alanine Serine Interconversions;
Pyruvate Alanine Serine Interconversions
fig|6666666.229902.peg.203 CDS CP003099.1 179280 178231 -3 - 1050 L-asparaginase (EC 3.5.1.1) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229902.peg.204 CDS CP003099.1 179575 180714 1 + 1140 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) CBSS-498211.3.peg.1415;
Conserved gene cluster associated with Met-tRNA formyltransferase;
RNA methylation
fig|6666666.229902.peg.205 CDS CP003099.1 180736 181287 1 + 552 Type IV pilus biogenesis protein PilF CBSS-498211.3.peg.1415
fig|6666666.229902.peg.206 CDS CP003099.1 181431 182486 3 + 1056 FIG021952: putative membrane protein CBSS-498211.3.peg.1415
fig|6666666.229902.peg.207 CDS CP003099.1 182498 183601 2 + 1104 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (EC 1.17.7.1) CBSS-498211.3.peg.1415;
CBSS-83331.1.peg.3039;
Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.229902.peg.208 CDS CP003099.1 183623 184900 2 + 1278 Histidyl-tRNA synthetase (EC 6.1.1.21) CBSS-498211.3.peg.1415;
tRNA aminoacylation, His
fig|6666666.229902.peg.209 CDS CP003099.1 184911 185525 3 + 615 Mlr7403 protein CBSS-290633.1.peg.1906;
CBSS-498211.3.peg.1415
fig|6666666.229902.peg.210 CDS CP003099.1 185578 186030 1 + 453 Putative protein-S-isoprenylcysteine methyltransferase - none -
fig|6666666.229902.peg.211 CDS CP003099.1 186740 186036 -2 - 705 Chromosomal replication initiator protein DnaA Cell Division Subsystem including YidCD;
DNA replication cluster 1
fig|6666666.229902.peg.212 CDS CP003099.1 186726 186863 3 + 138 hypothetical protein - none -
fig|6666666.229902.peg.213 CDS CP003099.1 188112 186835 -3 - 1278 Uracil permease De Novo Pyrimidine Synthesis
fig|6666666.229902.peg.214 CDS CP003099.1 188862 188236 -3 - 627 Uracil phosphoribosyltransferase (EC 2.4.2.9) De Novo Pyrimidine Synthesis;
pyrimidine conversions
fig|6666666.229902.peg.215 CDS CP003099.1 190709 188997 -2 - 1713 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase
fig|6666666.229902.peg.216 CDS CP003099.1 193250 190977 -2 - 2274 Glutathione biosynthesis bifunctional protein gshF (EC 6.3.2.2)(EC 6.3.2.3) Glutathione: Biosynthesis and gamma-glutamyl cycle
fig|6666666.229902.peg.217 CDS CP003099.1 193481 195082 2 + 1602 Dca - none -
fig|6666666.229902.peg.218 CDS CP003099.1 195339 195905 3 + 567 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent;
cAMP signaling in bacteria
fig|6666666.229902.peg.219 CDS CP003099.1 195915 197156 3 + 1242 ATP-dependent Clp protease ATP-binding subunit ClpX Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229902.peg.220 CDS CP003099.1 197542 197219 -1 - 324 FIG074102: hypothetical protein - none -
fig|6666666.229902.peg.221 CDS CP003099.1 197699 197535 -2 - 165 Phage-related protein - none -
fig|6666666.229902.peg.222 CDS CP003099.1 198847 198002 -1 - 846 membrane protein, putative - none -
fig|6666666.229902.peg.223 CDS CP003099.1 201076 198917 -1 - 2160 Copper-translocating P-type ATPase (EC 3.6.3.4) Copper Transport System;
Copper homeostasis
fig|6666666.229902.peg.224 CDS CP003099.1 201375 201163 -3 - 213 Copper chaperone Copper homeostasis
fig|6666666.229902.peg.225 CDS CP003099.1 201470 201856 2 + 387 Cu(I)-responsive transcriptional regulator Copper homeostasis
fig|6666666.229902.peg.226 CDS CP003099.1 202196 203419 2 + 1224 Type I restriction-modification system, DNA-methyltransferase subunit M (EC 2.1.1.72) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229902.peg.227 CDS CP003099.1 203567 204535 2 + 969 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229902.peg.228 CDS CP003099.1 204561 205385 3 + 825 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229902.peg.229 CDS CP003099.1 205387 206343 1 + 957 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229902.peg.230 CDS CP003099.1 207506 206670 -2 - 837 COG1720: Uncharacterized conserved protein tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229902.peg.231 CDS CP003099.1 207619 208539 1 + 921 1,4-dihydroxy-2-naphthoate polyprenyltransferase (EC 2.5.1.74) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229902.peg.232 CDS CP003099.1 208590 209090 3 + 501 Ribonuclease E inhibitor RraA RNA processing and degradation, bacterial
fig|6666666.229902.peg.233 CDS CP003099.1 209279 210661 2 + 1383 Arsenic efflux pump protein Arsenic resistance
fig|6666666.229902.peg.234 CDS CP003099.1 211264 210731 -1 - 534 FIG138315: Putative alpha helix protein Putative TldE-TldD proteolytic complex
fig|6666666.229902.peg.235 CDS CP003099.1 211385 212746 2 + 1362 TldE protein, part of TldE/TldD proteolytic complex Putative TldE-TldD proteolytic complex
fig|6666666.229902.peg.236 CDS CP003099.1 212985 213524 3 + 540 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) Cell division-ribosomal stress proteins cluster;
Folate biosynthesis cluster;
Purine conversions
fig|6666666.229902.peg.237 CDS CP003099.1 214733 213594 -2 - 1140 Glycerate kinase (EC 2.7.1.31) D-galactarate, D-glucarate and D-glycerate catabolism;
D-galactarate, D-glucarate and D-glycerate catabolism - gjo;
Glycerate metabolism;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Glycine and Serine Utilization;
Serine-glyoxylate cycle
fig|6666666.229902.peg.238 CDS CP003099.1 215917 214730 -1 - 1188 D-glycerate transporter (predicted) D-galactarate, D-glucarate and D-glycerate catabolism;
D-galactarate, D-glucarate and D-glycerate catabolism - gjo;
Glycerate metabolism
fig|6666666.229902.peg.239 CDS CP003099.1 217238 216135 -2 - 1104 Sugar diacid utilization regulator SdaR D-galactarate, D-glucarate and D-glycerate catabolism;
D-galactarate, D-glucarate and D-glycerate catabolism - gjo
fig|6666666.229902.peg.240 CDS CP003099.1 217551 217330 -3 - 222 Mobile element protein - none -
fig|6666666.229902.peg.241 CDS CP003099.1 217543 218154 1 + 612 UDP-glucose dehydrogenase (EC 1.1.1.22) - none -
fig|6666666.229902.peg.242 CDS CP003099.1 220040 218238 -2 - 1803 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) - none -
fig|6666666.229902.peg.243 CDS CP003099.1 221054 220152 -2 - 903 Lipoprotein nlpI precursor - none -
fig|6666666.229902.peg.244 CDS CP003099.1 223097 221139 -2 - 1959 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) Bacterial RNA-metabolizing Zn-dependent hydrolases;
Polyadenylation bacterial
fig|6666666.229902.peg.245 CDS CP003099.1 223371 223087 -3 - 285 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) Bacterial RNA-metabolizing Zn-dependent hydrolases;
Polyadenylation bacterial
fig|6666666.229902.peg.246 CDS CP003099.1 223563 224033 3 + 471 Putative sugar isomerase involved in processing of exogenous sialic acid Sialic Acid Metabolism
fig|6666666.229902.peg.247 CDS CP003099.1 225161 224508 -2 - 654 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD Recycling of Peptidoglycan Amino Acids
fig|6666666.229902.peg.248 CDS CP003099.1 225184 225636 1 + 453 Type IV pilin PilA Type IV pilus
fig|6666666.229902.peg.249 CDS CP003099.1 225663 225887 3 + 225 Type IV fimbrial assembly, ATPase PilB Type IV pilus
fig|6666666.229902.peg.250 CDS CP003099.1 225853 226221 1 + 369 Type IV fimbrial assembly, ATPase PilB Type IV pilus
fig|6666666.229902.peg.251 CDS CP003099.1 226202 227068 2 + 867 Type IV fimbrial assembly, ATPase PilB Type IV pilus
fig|6666666.229902.peg.252 CDS CP003099.1 227061 228284 3 + 1224 Type II secretory pathway, component PulF / Type IV fimbrial assembly protein PilC Type IV pilus
fig|6666666.229902.peg.253 CDS CP003099.1 228284 228805 2 + 522 Leader peptidase (Prepilin peptidase) (EC 3.4.23.43) / N-methyltransferase (EC 2.1.1.-) Type IV pilus;
Type IV pilus
fig|6666666.229902.peg.254 CDS CP003099.1 228790 228969 1 + 180 Leader peptidase (Prepilin peptidase) (EC 3.4.23.43) / N-methyltransferase (EC 2.1.1.-) Type IV pilus;
Type IV pilus
fig|6666666.229902.peg.255 CDS CP003099.1 229019 229642 2 + 624 Dephospho-CoA kinase (EC 2.7.1.24) Coenzyme A Biosynthesis
fig|6666666.229902.peg.256 CDS CP003099.1 229632 229814 3 + 183 FIG003276: zinc-binding protein - none -
fig|6666666.229902.peg.257 CDS CP003099.1 229843 230115 1 + 273 FIG00904058: hypothetical protein - none -
fig|6666666.229902.peg.258 CDS CP003099.1 230512 231885 1 + 1374 Sodium/glycine symporter GlyP - none -
fig|6666666.229902.peg.259 CDS CP003099.1 232112 232249 2 + 138 Ribosome hibernation protein YfiA Ribosome activity modulation
fig|6666666.229902.peg.260 CDS CP003099.1 232321 232437 1 + 117 Ribosome hibernation protein YfiA Ribosome activity modulation
fig|6666666.229902.peg.261 CDS CP003099.1 232892 233140 2 + 249 unknown - none -
fig|6666666.229902.peg.262 CDS CP003099.1 234054 233749 -3 - 306 DNA-binding protein Fis DNA structural proteins, bacterial
fig|6666666.229902.peg.263 CDS CP003099.1 235097 234048 -2 - 1050 tRNA dihydrouridine synthase B (EC 1.-.-.-) tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229902.peg.264 CDS CP003099.1 236225 235341 -2 - 885 Ribosomal protein L11 methyltransferase (EC 2.1.1.-) Heat shock dnaK gene cluster extended;
Ribosome biogenesis bacterial
fig|6666666.229902.peg.265 CDS CP003099.1 236780 236238 -2 - 543 Protein involved in cell division - none -
fig|6666666.229902.peg.266 CDS CP003099.1 238235 236799 -2 - 1437 Pantothenate:Na+ symporter (TC 2.A.21.1.1) CBSS-221988.1.peg.1679;
Coenzyme A Biosynthesis
fig|6666666.229902.peg.267 CDS CP003099.1 238504 238232 -1 - 273 FIG003021: Membrane protein CBSS-221988.1.peg.1679
fig|6666666.229902.peg.268 CDS CP003099.1 239916 238528 -3 - 1389 FOG: TPR repeat - none -
fig|6666666.229902.peg.269 CDS CP003099.1 240649 240035 -1 - 615 Periplasmic protein TonB, links inner and outer membranes - none -
fig|6666666.229902.peg.270 CDS CP003099.1 240942 241076 3 + 135 hypothetical protein - none -
fig|6666666.229902.peg.271 CDS CP003099.1 242443 241097 -1 - 1347 Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14) CBSS-221988.1.peg.1679;
Fatty Acid Biosynthesis FASII
fig|6666666.229902.peg.272 CDS CP003099.1 242953 242486 -1 - 468 Biotin carboxyl carrier protein of acetyl-CoA carboxylase CBSS-221988.1.peg.1679;
Fatty Acid Biosynthesis FASII
fig|6666666.229902.peg.273 CDS CP003099.1 242970 243122 3 + 153 hypothetical protein - none -
fig|6666666.229902.peg.274 CDS CP003099.1 243553 243077 -1 - 477 3-dehydroquinate dehydratase II (EC 4.2.1.10) CBSS-221988.1.peg.1679;
Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate);
Quinate degradation
fig|6666666.229902.peg.275 CDS CP003099.1 244653 243652 -3 - 1002 O-succinylbenzoate synthase (EC 4.2.1.113) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo;
Muconate lactonizing enzyme family
fig|6666666.229902.peg.276 CDS CP003099.1 244963 244634 -1 - 330 Nucleotidyltransferase (EC 2.7.7.-) - none -
fig|6666666.229902.peg.277 CDS CP003099.1 245364 244945 -3 - 420 Nucleotidyltransferase substrate binding protein, HI0074 - none -
fig|6666666.229902.peg.278 CDS CP003099.1 246261 245404 -3 - 858 Naphthoate synthase (EC 4.1.3.36) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229902.peg.279 CDS CP003099.1 247140 246373 -3 - 768 Triosephosphate isomerase (EC 5.3.1.1) CBSS-331978.3.peg.2915;
Glycolysis and Gluconeogenesis
fig|6666666.229902.peg.280 CDS CP003099.1 247313 247756 2 + 444 Histone acetyltransferase HPA2 and related acetyltransferases CBSS-216591.1.peg.168
fig|6666666.229902.peg.281 CDS CP003099.1 249197 247830 -2 - 1368 Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22) Heme and Siroheme Biosynthesis
fig|6666666.229902.peg.282 CDS CP003099.1 249650 249216 -2 - 435 Periplasmic/membrane protein associated with DUF414 - none -
fig|6666666.229902.peg.283 CDS CP003099.1 250223 249663 -2 - 561 Protein of unknown function DUF414 - none -
fig|6666666.229902.peg.284 CDS CP003099.1 250851 250324 -3 - 528 tRNA-specific adenosine-34 deaminase (EC 3.5.4.-) tRNA modification Bacteria;
tRNA processing;
tRNAmodification position 34
fig|6666666.229902.peg.285 CDS CP003099.1 252028 251177 -1 - 852 Thymidylate synthase (EC 2.1.1.45) Folate Biosynthesis;
pyrimidine conversions
fig|6666666.229902.peg.286 CDS CP003099.1 252822 252025 -3 - 798 Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-) Lipoprotein Biosynthesis
fig|6666666.229902.peg.287 CDS CP003099.1 253628 252831 -2 - 798 Protein of unknown function DUF81 - none -
fig|6666666.229902.peg.288 CDS CP003099.1 254230 253631 -1 - 600 Adenosine (5@1)-pentaphospho-(5@1@1)-adenosine pyrophosphohydrolase (EC 3.6.1.-) CBSS-224911.1.peg.435;
CBSS-364106.7.peg.3204;
Nudix proteins (nucleoside triphosphate hydrolases);
Phosphoglycerate mutase protein family
fig|6666666.229902.peg.289 CDS CP003099.1 254450 254869 2 + 420 Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229902.peg.290 CDS CP003099.1 254880 256388 3 + 1509 Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229902.peg.291 CDS CP003099.1 256385 257281 2 + 897 Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229902.peg.292 CDS CP003099.1 257371 258243 1 + 873 Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229902.peg.293 CDS CP003099.1 258243 258374 3 + 132 hypothetical protein - none -
fig|6666666.229902.peg.294 CDS CP003099.1 258326 259258 2 + 933 Ribokinase (EC 2.7.1.15) D-ribose utilization;
Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.229902.peg.295 CDS CP003099.1 259565 259356 -2 - 210 Cold shock protein CspG Cold shock, CspA family of proteins
fig|6666666.229902.peg.296 CDS CP003099.1 261456 260011 -3 - 1446 Glutamyl-tRNA synthetase (EC 6.1.1.17) Heme and Siroheme Biosynthesis;
tRNA aminoacylation, Glu and Gln
fig|6666666.229902.peg.297 CDS CP003099.1 261927 262715 3 + 789 Mannosyltransferase OCH1 and related enzymes - none -
fig|6666666.229902.peg.298 CDS CP003099.1 262828 264204 1 + 1377 Argininosuccinate lyase (EC 4.3.2.1) - none -
fig|6666666.229902.peg.299 CDS CP003099.1 264505 265854 1 + 1350 NADP-specific glutamate dehydrogenase (EC 1.4.1.4) Arginine and Ornithine Degradation;
Glutamate dehydrogenases;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Proline Synthesis
fig|6666666.229902.peg.300 CDS CP003099.1 266342 267796 2 + 1455 Catalase (EC 1.11.1.6) Oxidative stress;
Protection from Reactive Oxygen Species
fig|6666666.229902.peg.301 CDS CP003099.1 268627 268469 -1 - 159 hypothetical protein - none -
fig|6666666.229902.peg.302 CDS CP003099.1 268597 268731 1 + 135 hypothetical protein - none -
fig|6666666.229902.peg.303 CDS CP003099.1 272399 268923 -2 - 3477 DNA polymerase III alpha subunit (EC 2.7.7.7) - none -
fig|6666666.229902.peg.304 CDS CP003099.1 272364 272543 3 + 180 hypothetical protein - none -
fig|6666666.229902.peg.305 CDS CP003099.1 272598 274385 3 + 1788 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) Biotin biosynthesis;
Biotin synthesis cluster
fig|6666666.229902.peg.306 CDS CP003099.1 274402 274518 1 + 117 hypothetical protein - none -
fig|6666666.229902.peg.307 CDS CP003099.1 275175 280628 3 + 5454 Autotransporter adhesin - none -
fig|6666666.229902.peg.308 CDS CP003099.1 280882 283008 1 + 2127 Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) Ribonucleotide reduction
fig|6666666.229902.peg.309 CDS CP003099.1 283189 283308 1 + 120 hypothetical protein - none -
fig|6666666.229902.peg.310 CDS CP003099.1 283616 284083 2 + 468 Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) Ribonucleotide reduction
fig|6666666.229902.peg.311 CDS CP003099.1 284898 284110 -3 - 789 Putative deoxyribonuclease YjjV Deoxyribose and Deoxynucleoside Catabolism;
YcfH
fig|6666666.229902.peg.312 CDS CP003099.1 285182 284901 -2 - 282 hypothetical protein - none -
fig|6666666.229902.peg.313 CDS CP003099.1 285330 285175 -3 - 156 hypothetical protein - none -
fig|6666666.229902.peg.314 CDS CP003099.1 285936 285424 -3 - 513 Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase;
Queuosine-Archaeosine Biosynthesis
fig|6666666.229902.peg.315 CDS CP003099.1 286006 287415 1 + 1410 Cysteinyl-tRNA synthetase (EC 6.1.1.16) tRNA aminoacylation, Cys
fig|6666666.229902.peg.316 CDS CP003099.1 288525 287563 -3 - 963 Lipoate synthase Lipoic acid metabolism;
Lipoic acid synthesis cluster
fig|6666666.229902.peg.317 CDS CP003099.1 289228 288590 -1 - 639 Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase Lipoic acid metabolism;
Lipoic acid synthesis cluster
fig|6666666.229902.peg.318 CDS CP003099.1 289573 289274 -1 - 300 Proposed lipoate regulatory protein YbeD Lipoic acid metabolism;
Lipoic acid synthesis cluster
fig|6666666.229902.peg.319 CDS CP003099.1 290836 289646 -1 - 1191 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) Metallocarboxypeptidases (EC 3.4.17.-);
Murein Hydrolases;
Peptidoglycan Biosynthesis
fig|6666666.229902.peg.320 CDS CP003099.1 291724 290867 -1 - 858 Rare lipoprotein A precursor Peptidoglycan Biosynthesis
fig|6666666.229902.peg.321 CDS CP003099.1 292894 291773 -1 - 1122 Rod shape-determining protein RodA Bacterial Cytoskeleton;
Peptidoglycan Biosynthesis
fig|6666666.229902.peg.322 CDS CP003099.1 294842 292881 -2 - 1962 Penicillin-binding protein 2 (PBP-2) 16S rRNA modification within P site of ribosome;
CBSS-83331.1.peg.3039;
Peptidoglycan Biosynthesis
fig|6666666.229902.peg.323 CDS CP003099.1 295391 294855 -2 - 537 LSU m3Psi1915 methyltransferase RlmH RNA methylation;
Ribosome biogenesis bacterial;
tRNA modification Bacteria
fig|6666666.229902.peg.324 CDS CP003099.1 295591 295382 -1 - 210 Iojap protein - none -
fig|6666666.229902.peg.325 CDS CP003099.1 297014 295758 -2 - 1257 ATP-dependent RNA helicase RhlB - none -
fig|6666666.229902.peg.326 CDS CP003099.1 297314 298576 2 + 1263 Transcription termination factor Rho Transcription factors bacterial
fig|6666666.229902.peg.327 CDS CP003099.1 299941 298700 -1 - 1242 Major facilitator superfamily (MFS) transport protein - none -
fig|6666666.229902.peg.328 CDS CP003099.1 300028 300141 1 + 114 hypothetical protein - none -
fig|6666666.229902.peg.329 CDS CP003099.1 300406 300176 -1 - 231 Acyl carrier protein Fatty Acid Biosynthesis FASII;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229902.peg.330 CDS CP003099.1 301408 300680 -1 - 729 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) Fatty Acid Biosynthesis FASII
fig|6666666.229902.peg.331 CDS CP003099.1 302371 301433 -1 - 939 Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39) Fatty Acid Biosynthesis FASII
fig|6666666.229902.peg.332 CDS CP003099.1 303428 302478 -2 - 951 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) Fatty Acid Biosynthesis FASII
fig|6666666.229902.peg.333 CDS CP003099.1 303615 303475 -3 - 141 Phosphate:acyl-ACP acyltransferase PlsX Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229902.peg.334 CDS CP003099.1 304493 303612 -2 - 882 Phosphate:acyl-ACP acyltransferase PlsX Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229902.peg.335 CDS CP003099.1 304690 304520 -1 - 171 LSU ribosomal protein L32p - none -
fig|6666666.229902.peg.336 CDS CP003099.1 305231 304707 -2 - 525 COG1399 protein, clustered with ribosomal protein L32p - none -
fig|6666666.229902.peg.337 CDS CP003099.1 305944 305303 -1 - 642 Dethiobiotin synthetase (EC 6.3.3.3) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229902.peg.338 CDS CP003099.1 306684 305944 -3 - 741 Biotin synthesis protein BioC Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229902.peg.339 CDS CP003099.1 307352 306702 -2 - 651 Biotin synthesis protein BioG Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229902.peg.340 CDS CP003099.1 308508 307333 -3 - 1176 8-amino-7-oxononanoate synthase (EC 2.3.1.47) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229902.peg.341 CDS CP003099.1 309790 308501 -1 - 1290 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229902.peg.342 CDS CP003099.1 310013 310882 2 + 870 Phosphatidylserine decarboxylase (EC 4.1.1.65) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229902.peg.343 CDS CP003099.1 310908 311540 3 + 633 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase
fig|6666666.229902.peg.344 CDS CP003099.1 312005 311604 -2 - 402 Glutamate 5-kinase (EC 2.7.2.11) Proline Synthesis
fig|6666666.229902.peg.345 CDS CP003099.1 312247 312035 -1 - 213 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA Proline Synthesis;
Proline Synthesis
fig|6666666.229902.peg.346 CDS CP003099.1 312407 312228 -2 - 180 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA Proline Synthesis;
Proline Synthesis
fig|6666666.229902.peg.347 CDS CP003099.1 312558 313343 3 + 786 FIG023911: putative membrane protein CBSS-316275.9.peg.382
fig|6666666.229902.peg.348 CDS CP003099.1 313345 313809 1 + 465 FIG001826: putative inner membrane protein CBSS-316275.9.peg.382
fig|6666666.229902.peg.349 CDS CP003099.1 313849 314334 1 + 486 Dihydrofolate reductase (EC 1.5.1.3) 5-FCL-like protein;
Folate Biosynthesis
fig|6666666.229902.peg.350 CDS CP003099.1 315764 314454 -2 - 1311 Magnesium and cobalt efflux protein CorC CBSS-56780.10.peg.1536;
Copper homeostasis: copper tolerance;
Glycyl-tRNA synthetase containing cluster;
Magnesium transport;
tRNA-methylthiotransferase containing cluster
fig|6666666.229902.peg.351 CDS CP003099.1 315718 315858 1 + 141 hypothetical protein - none -
fig|6666666.229902.peg.352 CDS CP003099.1 316379 315855 -2 - 525 FIG00696143: hypothetical protein - none -
fig|6666666.229902.peg.353 CDS CP003099.1 317193 316411 -3 - 783 Putative deoxyribonuclease YcfH YcfH
fig|6666666.229902.peg.354 CDS CP003099.1 318180 317197 -3 - 984 DNA polymerase III delta prime subunit (EC 2.7.7.7) - none -
fig|6666666.229902.peg.355 CDS CP003099.1 318809 318177 -2 - 633 Thymidylate kinase (EC 2.7.4.9) pyrimidine conversions
fig|6666666.229902.peg.356 CDS CP003099.1 319854 318811 -3 - 1044 FIG004453: protein YceG like CBSS-323097.3.peg.2594;
Cluster containing Alanyl-tRNA synthetase;
tRNA modification Bacteria
fig|6666666.229902.peg.357 CDS CP003099.1 320331 319993 -3 - 339 Nitrogen regulatory protein P-II Ammonia assimilation
fig|6666666.229902.peg.358 CDS CP003099.1 321165 320407 -3 - 759 Transcriptional regulators of sugar metabolism - none -
fig|6666666.229902.peg.359 CDS CP003099.1 321358 322263 1 + 906 D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) Polyhydroxybutyrate metabolism
fig|6666666.229902.peg.360 CDS CP003099.1 322266 323510 3 + 1245 Predicted pyridoxine biosynthesis protein (probably from glycolaldehide) - none -
fig|6666666.229902.peg.361 CDS CP003099.1 323507 324139 2 + 633 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases - none -
fig|6666666.229902.peg.362 CDS CP003099.1 324142 324918 1 + 777 Hydroxypyruvate isomerase (EC 5.3.1.22) Glycerate metabolism
fig|6666666.229902.peg.363 CDS CP003099.1 325007 326359 2 + 1353 Low-affinity gluconate/H+ symporter GntU D-gluconate and ketogluconates metabolism
fig|6666666.229902.peg.364 CDS CP003099.1 326384 327724 2 + 1341 FIG00782214: hypothetical protein - none -
fig|6666666.229902.peg.365 CDS CP003099.1 327742 328434 1 + 693 Metal-dependent hydrolase - none -
fig|6666666.229902.peg.366 CDS CP003099.1 328482 329606 3 + 1125 Lysophospholipase (EC 3.1.1.5) Triacylglycerol metabolism
fig|6666666.229902.peg.367 CDS CP003099.1 329567 330274 2 + 708 Lysophospholipase (EC 3.1.1.5) Triacylglycerol metabolism
fig|6666666.229902.peg.368 CDS CP003099.1 330470 331288 2 + 819 HMP-PP hydrolase (pyridoxal phosphatase) Cof, detected in genetic screen for thiamin metabolic genes (PMID:15292217) - none -
fig|6666666.229902.peg.369 CDS CP003099.1 334094 331494 -2 - 2601 DNA mismatch repair protein MutS DNA repair, bacterial MutL-MutS system;
DNA repair system including RecA, MutS and a hypothetical protein
fig|6666666.229902.peg.370 CDS CP003099.1 335225 334179 -2 - 1047 hypothetical protein - none -
fig|6666666.229902.peg.371 CDS CP003099.1 336167 335475 -2 - 693 rRNA small subunit methyltransferase J - none -
fig|6666666.229902.peg.372 CDS CP003099.1 337266 336169 -3 - 1098 tRNA (uracil(54)-C5)-methyltransferase (EC 2.1.1.35) RNA methylation;
tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229902.peg.373 CDS CP003099.1 337665 337336 -3 - 330 Protein yifE - none -
fig|6666666.229902.peg.374 CDS CP003099.1 338342 337725 -2 - 618 Periplasmic thiol:disulfide interchange protein DsbA Biogenesis of c-type cytochromes;
Periplasmic disulfide interchange
fig|6666666.229902.peg.375 CDS CP003099.1 338627 338361 -2 - 267 Protein yihD - none -
fig|6666666.229902.peg.376 CDS CP003099.1 338711 339295 2 + 585 Molybdopterin-guanine dinucleotide biosynthesis protein MobA Molybdenum cofactor biosynthesis;
ar-431-EC Molybdopterin-guanine dinucleotide biosynthesis
fig|6666666.229902.peg.377 CDS CP003099.1 339394 339924 1 + 531 ATPases involved in chromosome partitioning - none -
fig|6666666.229902.peg.378 CDS CP003099.1 340036 341565 1 + 1530 Fructose-specific phosphocarrier protein HPr (EC 2.7.1.69) / PTS system, fructose-specific IIA component (EC 2.7.1.69) Fructose utilization;
Fructose utilization
fig|6666666.229902.peg.379 CDS CP003099.1 341568 342509 3 + 942 1-phosphofructokinase (EC 2.7.1.56) Fructose utilization
fig|6666666.229902.peg.380 CDS CP003099.1 342514 344178 1 + 1665 PTS system, fructose-specific IIB component (EC 2.7.1.69) / PTS system, fructose-specific IIC component (EC 2.7.1.69) Fructose utilization;
Fructose utilization
fig|6666666.229902.peg.381 CDS CP003099.1 344200 344478 1 + 279 hypothetical protein - none -
fig|6666666.229902.peg.382 CDS CP003099.1 344513 344644 2 + 132 hypothetical protein - none -
fig|6666666.229902.peg.383 CDS CP003099.1 345195 344674 -3 - 522 LysR family regulatory protein CidR Murein hydrolase regulation and cell death
fig|6666666.229902.peg.384 CDS CP003099.1 345210 345761 3 + 552 NAD(P)H oxidoreductase YRKL (EC 1.6.99.-) @ Putative NADPH-quinone reductase (modulator of drug activity B) @ Flavodoxin 2 Flavodoxin;
Flavodoxin
fig|6666666.229902.peg.385 CDS CP003099.1 345801 346139 3 + 339 hypothetical protein - none -
fig|6666666.229902.peg.386 CDS CP003099.1 346285 346989 1 + 705 hypothetical protein - none -
fig|6666666.229902.peg.387 CDS CP003099.1 347430 347840 3 + 411 Preprotein translocase subunit SecE (TC 3.A.5.1.1) LSU ribosomal proteins cluster
fig|6666666.229902.peg.388 CDS CP003099.1 347842 348405 1 + 564 Transcription antitermination protein NusG LSU ribosomal proteins cluster;
Transcription factors bacterial
fig|6666666.229902.peg.389 CDS CP003099.1 348548 348976 2 + 429 LSU ribosomal protein L11p (L12e) LSU ribosomal proteins cluster
fig|6666666.229902.peg.390 CDS CP003099.1 348981 349670 3 + 690 LSU ribosomal protein L1p (L10Ae) LSU ribosomal proteins cluster
fig|6666666.229902.peg.391 CDS CP003099.1 349685 349861 2 + 177 hypothetical protein - none -
fig|6666666.229902.peg.392 CDS CP003099.1 350032 350523 1 + 492 LSU ribosomal protein L10p (P0) LSU ribosomal proteins cluster
fig|6666666.229902.peg.393 CDS CP003099.1 350575 350946 1 + 372 LSU ribosomal protein L7/L12 (P1/P2) LSU ribosomal proteins cluster
fig|6666666.229902.peg.394 CDS CP003099.1 351217 355245 1 + 4029 DNA-directed RNA polymerase beta subunit (EC 2.7.7.6) Mycobacterium virulence operon involved in DNA transcription;
RNA polymerase bacterial
fig|6666666.229902.peg.395 CDS CP003099.1 355348 359616 1 + 4269 DNA-directed RNA polymerase beta@1 subunit (EC 2.7.7.6) Mycobacterium virulence operon involved in DNA transcription;
RNA polymerase bacterial
fig|6666666.229902.peg.396 CDS CP003099.1 360637 360380 -1 - 258 SSU ribosomal protein S17p (S11e) - none -
fig|6666666.229902.peg.397 CDS CP003099.1 360828 360637 -3 - 192 LSU ribosomal protein L29p (L35e) - none -
fig|6666666.229902.peg.398 CDS CP003099.1 361238 360828 -2 - 411 LSU ribosomal protein L16p (L10e) - none -
fig|6666666.229902.peg.399 CDS CP003099.1 361959 361252 -3 - 708 SSU ribosomal protein S3p (S3e) - none -
fig|6666666.229902.peg.400 CDS CP003099.1 362308 361976 -1 - 333 LSU ribosomal protein L22p (L17e) - none -
fig|6666666.229902.peg.401 CDS CP003099.1 362465 362319 -2 - 147 SSU ribosomal protein S19p (S15e) - none -
fig|6666666.229902.peg.402 CDS CP003099.1 363441 362620 -3 - 822 LSU ribosomal protein L2p (L8e) - none -
fig|6666666.229902.peg.403 CDS CP003099.1 363764 363462 -2 - 303 LSU ribosomal protein L23p (L23Ae) - none -
fig|6666666.229902.peg.404 CDS CP003099.1 364363 363761 -1 - 603 LSU ribosomal protein L4p (L1e) - none -
fig|6666666.229902.peg.405 CDS CP003099.1 365005 364379 -1 - 627 LSU ribosomal protein L3p (L3e) - none -
fig|6666666.229902.peg.406 CDS CP003099.1 365333 365022 -2 - 312 SSU ribosomal protein S10p (S20e) - none -
fig|6666666.229902.peg.407 CDS CP003099.1 366479 365583 -2 - 897 Transcriptional regulators, LysR family - none -
fig|6666666.229902.peg.408 CDS CP003099.1 366816 367406 3 + 591 Acetyl-CoA:acetoacetyl-CoA transferase, alpha subunit (EC 2.8.3.8) - none -
fig|6666666.229902.peg.409 CDS CP003099.1 367418 368083 2 + 666 Acetyl-CoA:acetoacetyl-CoA transferase, beta subunit (EC 2.8.3.8) - none -
fig|6666666.229902.peg.410 CDS CP003099.1 368086 369429 1 + 1344 Short chain fatty acids transporter Polyhydroxybutyrate metabolism
fig|6666666.229902.peg.411 CDS CP003099.1 369447 370628 3 + 1182 Acetyl-CoA acetyltransferase (EC 2.3.1.9) Butanol Biosynthesis;
Isoprenoid Biosynthesis;
Polyhydroxybutyrate metabolism;
Serine-glyoxylate cycle
fig|6666666.229902.peg.412 CDS CP003099.1 371193 370726 -3 - 468 Transcriptional regulator, AsnC family - none -
fig|6666666.229902.peg.413 CDS CP003099.1 372813 371284 -3 - 1530 Arginine/ornithine antiporter ArcD Arginine Deiminase Pathway;
Arginine and Ornithine Degradation;
Polyamine Metabolism
fig|6666666.229902.peg.414 CDS CP003099.1 373862 372930 -2 - 933 Carbamate kinase (EC 2.7.2.2) Arginine Deiminase Pathway;
Arginine and Ornithine Degradation;
Polyamine Metabolism
fig|6666666.229902.peg.415 CDS CP003099.1 374876 373872 -2 - 1005 Ornithine carbamoyltransferase (EC 2.1.3.3) Arginine Deiminase Pathway;
Arginine and Ornithine Degradation
fig|6666666.229902.peg.416 CDS CP003099.1 375119 376510 2 + 1392 Chloride channel protein - none -
fig|6666666.229902.peg.417 CDS CP003099.1 376513 377496 1 + 984 tRNA dihydrouridine synthase A - none -
fig|6666666.229902.peg.418 CDS CP003099.1 378502 377552 -1 - 951 Aspartate--ammonia ligase (EC 6.3.1.1) CBSS-262728.1.peg.1737;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229902.peg.419 CDS CP003099.1 378707 379159 2 + 453 Regulatory protein AsnC CBSS-262728.1.peg.1737
fig|6666666.229902.peg.420 CDS CP003099.1 379193 379951 2 + 759 Uridine phosphorylase (EC 2.4.2.3) pyrimidine conversions
fig|6666666.229902.peg.421 CDS CP003099.1 381149 380088 -2 - 1062 Putative permease PerM (= YfgO) - none -
fig|6666666.229902.peg.422 CDS CP003099.1 381223 381573 1 + 351 Arsenate reductase (EC 1.20.4.1) Anaerobic respiratory reductases;
Arsenic resistance;
Transcription repair cluster
fig|6666666.229902.peg.423 CDS CP003099.1 382039 381677 -1 - 363 FIG00696564: hypothetical protein - none -
fig|6666666.229902.peg.424 CDS CP003099.1 382274 381990 -2 - 285 hypothetical protein - none -
fig|6666666.229902.peg.425 CDS CP003099.1 382483 383814 1 + 1332 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase Methylthiotransferases;
Ribosomal protein S12p Asp methylthiotransferase
fig|6666666.229902.peg.426 CDS CP003099.1 383939 384343 2 + 405 Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48) LMPTP YfkJ cluster;
Protein deglycation
fig|6666666.229902.peg.427 CDS CP003099.1 384470 384688 2 + 219 hypothetical protein - none -
fig|6666666.229902.peg.428 CDS CP003099.1 385356 384760 -3 - 597 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) G3E family of P-loop GTPases (metallocenter biosynthesis);
Peptidyl-prolyl cis-trans isomerase;
Potassium homeostasis
fig|6666666.229902.peg.429 CDS CP003099.1 386170 385451 -1 - 720 probable periplasmic protein NMA1059 - none -
fig|6666666.229902.peg.430 CDS CP003099.1 386655 386221 -3 - 435 Ribonuclease E inhibitor RraB RNA processing and degradation, bacterial
fig|6666666.229902.peg.431 CDS CP003099.1 387145 386750 -1 - 396 Large-conductance mechanosensitive channel Potassium homeostasis
fig|6666666.229902.peg.432 CDS CP003099.1 388631 387255 -2 - 1377 Trk system potassium uptake protein TrkA Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Hyperosmotic potassium uptake;
Potassium homeostasis;
Potassium homeostasis
fig|6666666.229902.peg.433 CDS CP003099.1 390010 388655 -1 - 1356 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) - none -
fig|6666666.229902.peg.434 CDS CP003099.1 390966 390010 -3 - 957 Methionyl-tRNA formyltransferase (EC 2.1.2.9) Conserved gene cluster associated with Met-tRNA formyltransferase;
Translation initiation factors bacterial
fig|6666666.229902.peg.435 CDS CP003099.1 391544 391032 -2 - 513 Peptide deformylase (EC 3.5.1.88) Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Translation termination factors bacterial
fig|6666666.229902.peg.437 CDS CP003099.1 397713 397279 -3 - 435 D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase (EC 3.1.1.-) Capsular heptose biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.229902.peg.438 CDS CP003099.1 397835 397719 -2 - 117 D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase (EC 3.1.1.-) Capsular heptose biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.229902.peg.439 CDS CP003099.1 398032 399069 1 + 1038 Methionine ABC transporter ATP-binding protein Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229902.peg.440 CDS CP003099.1 399059 399736 2 + 678 Methionine ABC transporter permease protein Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229902.peg.441 CDS CP003099.1 399771 400613 3 + 843 Methionine ABC transporter substrate-binding protein Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229902.peg.442 CDS CP003099.1 400719 401216 3 + 498 Phospholipid-binding protein - none -
fig|6666666.229902.peg.443 CDS CP003099.1 401335 401811 1 + 477 tRNA (cytidine(34)-2@1-O)-methyltransferase (EC 2.1.1.207) Biotin synthesis cluster;
RNA methylation
fig|6666666.229902.peg.444 CDS CP003099.1 402782 401907 -2 - 876 Membrane protein LAPB - none -
fig|6666666.229902.peg.445 CDS CP003099.1 402905 402792 -2 - 114 hypothetical protein - none -
fig|6666666.229902.peg.446 CDS CP003099.1 402915 403529 3 + 615 GTP-binding protein EngB Universal GTPases
fig|6666666.229902.peg.447 CDS CP003099.1 403644 404510 3 + 867 MG(2+) CHELATASE FAMILY PROTEIN CBSS-203122.12.peg.188
fig|6666666.229902.peg.448 CDS CP003099.1 404612 406360 2 + 1749 hypothetical protein - none -
fig|6666666.229902.peg.449 CDS CP003099.1 406948 408195 1 + 1248 Ribokinase (EC 2.7.1.15) D-ribose utilization;
Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.229902.peg.450 CDS CP003099.1 410259 409432 -3 - 828 Thermostable 8-oxoguanine DNA glycosylase - none -
fig|6666666.229902.peg.451 CDS CP003099.1 411207 417182 3 + 5976 VgrG protein - none -
fig|6666666.229902.peg.452 CDS CP003099.1 417186 417701 3 + 516 hypothetical protein - none -
fig|6666666.229902.peg.453 CDS CP003099.1 418279 418404 1 + 126 hypothetical protein - none -
fig|6666666.229902.peg.454 CDS CP003099.1 419335 418523 -1 - 813 Bll0873 protein - none -
fig|6666666.229902.peg.455 CDS CP003099.1 420218 419370 -2 - 849 Chromosome (plasmid) partitioning protein ParB Bacterial Cytoskeleton;
Cell Division Subsystem including YidCD;
RNA modification and chromosome partitioning cluster
fig|6666666.229902.peg.456 CDS CP003099.1 421739 420678 -2 - 1062 Recombinase - none -
fig|6666666.229902.peg.457 CDS CP003099.1 423982 422567 -1 - 1416 FIGfam110555 CBSS-203122.12.peg.188
fig|6666666.229902.peg.458 CDS CP003099.1 425097 423979 -3 - 1119 Mll9366 protein CBSS-203122.12.peg.188
fig|6666666.229902.peg.459 CDS CP003099.1 425948 425055 -2 - 894 TniB NTP-binding protein CBSS-203122.12.peg.188
fig|6666666.229902.peg.460 CDS CP003099.1 427867 425948 -1 - 1920 TniA putative transposase CBSS-203122.12.peg.188
fig|6666666.229902.peg.461 CDS CP003099.1 428522 427860 -2 - 663 FIGfam050825 CBSS-203122.12.peg.188
fig|6666666.229902.peg.462 CDS CP003099.1 428658 429362 3 + 705 MG(2+) CHELATASE FAMILY PROTEIN / ComM-related protein CBSS-203122.12.peg.188;
CBSS-203122.12.peg.188
fig|6666666.229902.peg.463 CDS CP003099.1 430201 429374 -1 - 828 Putative periplasmic protein YibQ, distant homology with nucleoside diphosphatase and polysaccharide deacetylase CBSS-224911.1.peg.435;
Phosphoglycerate mutase protein family
fig|6666666.229902.peg.464 CDS CP003099.1 431415 430198 -3 - 1218 Periplasmic septal ring factor with murein hydrolase activity EnvC/YibP CBSS-224911.1.peg.435;
Glutaredoxins;
Phosphoglycerate mutase protein family
fig|6666666.229902.peg.465 CDS CP003099.1 433324 431666 -1 - 1659 Phosphoglucosamine mutase (EC 5.4.2.10) Sialic Acid Metabolism;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229902.peg.466 CDS CP003099.1 433605 433483 -3 - 123 hypothetical protein - none -
fig|6666666.229902.peg.467 CDS CP003099.1 433697 434056 2 + 360 Phosphoglycerate mutase (EC 5.4.2.1) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis;
Phosphoglycerate mutase protein family
fig|6666666.229902.peg.468 CDS CP003099.1 434053 434307 1 + 255 Phosphoglycerate mutase (EC 5.4.2.1) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis;
Phosphoglycerate mutase protein family
fig|6666666.229902.peg.469 CDS CP003099.1 434886 434392 -3 - 495 Protein yfbU - none -
fig|6666666.229902.peg.470 CDS CP003099.1 435680 434904 -2 - 777 Nucleoside ABC transporter, periplasmic nucleoside-binding protein - none -
fig|6666666.229902.peg.471 CDS CP003099.1 437329 435746 -1 - 1584 Nickel ABC transporter, periplasmic nickel-binding protein NikA (TC 3.A.1.5.3) Transport of Nickel and Cobalt
fig|6666666.229902.peg.472 CDS CP003099.1 438726 437395 -3 - 1332 ATP-dependent hsl protease ATP-binding subunit HslU Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229902.peg.473 CDS CP003099.1 439274 438747 -2 - 528 ATP-dependent protease HslV (EC 3.4.25.-) Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229902.peg.474 CDS CP003099.1 439489 440196 1 + 708 NMN phosphatase (EC 3.1.3.5); Class B acid phosphatase precursor (EC 3.1.3.2) NAD and NADP cofactor biosynthesis global
fig|6666666.229902.peg.475 CDS CP003099.1 440895 440578 -3 - 318 hypothetical protein - none -
fig|6666666.229902.peg.476 CDS CP003099.1 442418 441174 -2 - 1245 Tryptophan-specific transport protein - none -
fig|6666666.229902.peg.477 CDS CP003099.1 442580 443107 2 + 528 Inorganic pyrophosphatase (EC 3.6.1.1) Phosphate metabolism
fig|6666666.229902.peg.478 CDS CP003099.1 443183 443956 2 + 774 Zn-dependent protease with chaperone function - none -
fig|6666666.229902.peg.479 CDS CP003099.1 444636 445280 3 + 645 3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster;
riboflavin to FAD
fig|6666666.229902.peg.480 CDS CP003099.1 446371 445367 -1 - 1005 Tryptophanyl-tRNA synthetase (EC 6.1.1.2) tRNA aminoacylation, Trp
fig|6666666.229902.peg.481 CDS CP003099.1 447907 446546 -1 - 1362 Signal recognition particle receptor protein FtsY (=alpha subunit) (TC 3.A.5.1.1) Bacterial Cell Division;
Bacterial signal recognition particle (SRP);
Universal GTPases
fig|6666666.229902.peg.482 CDS CP003099.1 447995 448579 2 + 585 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) CBSS-266117.6.peg.1260;
CBSS-269801.1.peg.1715;
RNA methylation
fig|6666666.229902.peg.483 CDS CP003099.1 448866 449831 3 + 966 PTS system, mannose-specific IIA component (EC 2.7.1.69) / PTS system, mannose-specific IIB component (EC 2.7.1.69) Mannose Metabolism;
Mannose Metabolism;
Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229902.peg.484 CDS CP003099.1 449849 450646 2 + 798 PTS system, mannose-specific IIC component - none -
fig|6666666.229902.peg.485 CDS CP003099.1 450660 451496 3 + 837 PTS system, mannose-specific IID component (EC 2.7.1.69) Mannose Metabolism;
Sialic Acid Metabolism
fig|6666666.229902.peg.486 CDS CP003099.1 451606 452781 1 + 1176 Cof protein - none -
fig|6666666.229902.peg.487 CDS CP003099.1 453073 454323 1 + 1251 Nucleoside permease NupC - none -
fig|6666666.229902.peg.488 CDS CP003099.1 454449 455168 3 + 720 Purine nucleoside phosphorylase (EC 2.4.2.1) Adenosyl nucleosidases;
Deoxyribose and Deoxynucleoside Catabolism;
Purine conversions;
pyrimidine conversions
fig|6666666.229902.peg.489 CDS CP003099.1 455186 455329 2 + 144 hypothetical protein - none -
fig|6666666.229902.peg.490 CDS CP003099.1 455737 457857 1 + 2121 Biofilm PGA outer membrane secretin PgaA Biofilm Adhesin Biosynthesis
fig|6666666.229902.peg.491 CDS CP003099.1 457873 459300 1 + 1428 Biofilm PGA synthesis deacetylase PgaB (EC 3.-) Biofilm Adhesin Biosynthesis
fig|6666666.229902.peg.492 CDS CP003099.1 459312 459788 3 + 477 Biofilm PGA synthesis deacetylase PgaB (EC 3.-) Biofilm Adhesin Biosynthesis
fig|6666666.229902.peg.493 CDS CP003099.1 459797 461032 2 + 1236 Biofilm PGA synthesis N-glycosyltransferase PgaC (EC 2.4.-.-) Biofilm Adhesin Biosynthesis
fig|6666666.229902.peg.494 CDS CP003099.1 461035 461328 1 + 294 AagD - none -
fig|6666666.229902.peg.495 CDS CP003099.1 461431 461291 -1 - 141 hypothetical protein - none -
fig|6666666.229902.peg.496 CDS CP003099.1 462771 461446 -3 - 1326 Hexose phosphate uptake regulatory protein UhpC - none -
fig|6666666.229902.peg.497 CDS CP003099.1 462942 463574 3 + 633 Pyridoxamine 5@1-phosphate oxidase (EC 1.4.3.5) Pyridoxin (Vitamin B6) Biosynthesis
fig|6666666.229902.peg.498 CDS CP003099.1 464306 463662 -2 - 645 hypothetical protein - none -
fig|6666666.229902.peg.499 CDS CP003099.1 466219 464819 -1 - 1401 USG protein - none -
fig|6666666.229902.peg.500 CDS CP003099.1 467579 466278 -2 - 1302 Predicted ATPase (AAA+ superfamily) - none -
fig|6666666.229902.peg.501 CDS CP003099.1 469381 468050 -1 - 1332 ATP-dependent RNA helicase SrmB - none -
fig|6666666.229902.peg.502 CDS CP003099.1 469368 469496 3 + 129 hypothetical protein - none -
fig|6666666.229902.peg.503 CDS CP003099.1 469480 470178 1 + 699 tRNA (adenine37-N(6))-methyltransferase TrmN6 (EC 2.1.1.223) RNA methylation
fig|6666666.229902.peg.504 CDS CP003099.1 470942 470253 -2 - 690 Ribosyl nicotinamide transporter, PnuC-like NAD and NADP cofactor biosynthesis global
fig|6666666.229902.peg.505 CDS CP003099.1 471323 471982 2 + 660 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses;
Ribosome biogenesis bacterial;
tRNA modification Bacteria
fig|6666666.229902.peg.506 CDS CP003099.1 472004 472174 2 + 171 hypothetical protein - none -
fig|6666666.229902.peg.507 CDS CP003099.1 472805 472299 -2 - 507 S-ribosylhomocysteine lyase (EC 4.4.1.21) / Autoinducer-2 production protein LuxS Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon);
Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229902.peg.508 CDS CP003099.1 473504 473019 -2 - 486 Putative membrane protein - none -
fig|6666666.229902.peg.509 CDS CP003099.1 474112 473507 -1 - 606 Galactoside O-acetyltransferase (EC 2.3.1.18) Lactose utilization
fig|6666666.229902.peg.510 CDS CP003099.1 474714 474112 -3 - 603 Putative phosphatase YqaB 2-phosphoglycolate salvage
fig|6666666.229902.peg.511 CDS CP003099.1 474843 475223 3 + 381 FIG00782409: hypothetical protein - none -
fig|6666666.229902.peg.512 CDS CP003099.1 477753 475738 -3 - 2016 ATP-dependent DNA helicase Rep DNA repair, bacterial UvrD and related helicases
fig|6666666.229902.peg.513 CDS CP003099.1 477993 477763 -3 - 231 FIG00696102: hypothetical protein - none -
fig|6666666.229902.peg.514 CDS CP003099.1 478660 478097 -1 - 564 Outer membrane protein 18/16 - none -
fig|6666666.229902.peg.515 CDS CP003099.1 478877 481678 2 + 2802 DNA polymerase I (EC 2.7.7.7) DNA Repair Base Excision
fig|6666666.229902.peg.516 CDS CP003099.1 481693 481815 1 + 123 hypothetical protein - none -
fig|6666666.229902.peg.517 CDS CP003099.1 482065 482412 1 + 348 hypothetical protein - none -
fig|6666666.229902.peg.518 CDS CP003099.1 483279 482518 -3 - 762 5@1-nucleotidase (EC 3.1.3.5); NAD pyrophosphatase, periplasmic (EC 3.6.1.22) Purine conversions;
pyrimidine conversions
fig|6666666.229902.peg.519 CDS CP003099.1 484220 483276 -2 - 945 5@1-nucleotidase (EC 3.1.3.5); NAD pyrophosphatase, periplasmic (EC 3.6.1.22) Purine conversions;
pyrimidine conversions
fig|6666666.229902.peg.520 CDS CP003099.1 485157 484357 -3 - 801 Protein HI0205 precursor - none -
fig|6666666.229902.peg.521 CDS CP003099.1 485389 485270 -1 - 120 hypothetical protein - none -
fig|6666666.229902.peg.522 CDS CP003099.1 485411 486337 2 + 927 ADP-L-glycero-D-manno-heptose-6-epimerase (EC 5.1.3.20) LOS core oligosaccharide biosynthesis
fig|6666666.229902.peg.523 CDS CP003099.1 486507 487634 3 + 1128 Fic family protein - none -
fig|6666666.229902.peg.524 CDS CP003099.1 487654 488697 1 + 1044 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) LOS core oligosaccharide biosynthesis
fig|6666666.229902.peg.525 CDS CP003099.1 488815 489891 1 + 1077 Glutathionylspermidine synthase (EC 6.3.1.8) / Glutathionylspermidine amidohydrolase (EC 3.5.1.78) Glutathionylspermidine and Trypanothione;
Glutathionylspermidine and Trypanothione
fig|6666666.229902.peg.526 CDS CP003099.1 489930 490709 3 + 780 Glutathionylspermidine synthase (EC 6.3.1.8) / Glutathionylspermidine amidohydrolase (EC 3.5.1.78) Glutathionylspermidine and Trypanothione;
Glutathionylspermidine and Trypanothione
fig|6666666.229902.peg.527 CDS CP003099.1 491430 490795 -3 - 636 Cytochrome c-type protein NapC - none -
fig|6666666.229902.peg.528 CDS CP003099.1 491893 491444 -1 - 450 Nitrate reductase cytochrome c550-type subunit - none -
fig|6666666.229902.peg.529 CDS CP003099.1 492812 491931 -2 - 882 Polyferredoxin NapH (periplasmic nitrate reductase) - none -
fig|6666666.229902.peg.530 CDS CP003099.1 493651 492812 -1 - 840 Ferredoxin-type protein NapG (periplasmic nitrate reductase) - none -
fig|6666666.229902.peg.531 CDS CP003099.1 496185 493699 -3 - 2487 Periplasmic nitrate reductase precursor (EC 1.7.99.4) - none -
fig|6666666.229902.peg.532 CDS CP003099.1 496503 496219 -3 - 285 Periplasmic nitrate reductase component NapD - none -
fig|6666666.229902.peg.533 CDS CP003099.1 496733 496569 -2 - 165 hypothetical protein - none -
fig|6666666.229902.peg.534 CDS CP003099.1 496779 498482 3 + 1704 Nitrate/nitrite sensor protein (EC 2.7.3.-) - none -
fig|6666666.229902.peg.535 CDS CP003099.1 498497 499522 2 + 1026 UDP-N-acetylenolpyruvoylglucosamine reductase (EC 1.1.1.158) Peptidoglycan Biosynthesis;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229902.peg.536 CDS CP003099.1 499538 499852 2 + 315 Uncharacterized protein conserved in bacteria - none -
fig|6666666.229902.peg.537 CDS CP003099.1 500037 500885 3 + 849 RNA polymerase sigma factor RpoH Heat shock dnaK gene cluster extended;
Transcription initiation, bacterial sigma factors
fig|6666666.229902.peg.538 CDS CP003099.1 501218 500952 -2 - 267 DNA transformation protein TfoX CBSS-83333.1.peg.946;
Orphan regulatory proteins
fig|6666666.229902.peg.539 CDS CP003099.1 501286 501158 -1 - 129 DNA transformation protein TfoX CBSS-83333.1.peg.946;
Orphan regulatory proteins
fig|6666666.229902.peg.540 CDS CP003099.1 501749 501624 -2 - 126 hypothetical protein - none -
fig|6666666.229902.peg.541 CDS CP003099.1 504058 502874 -1 - 1185 Translation elongation factor Tu Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Translation elongation factors bacterial;
Universal GTPases
fig|6666666.229902.peg.542 CDS CP003099.1 506224 504122 -1 - 2103 Translation elongation factor G Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Translation elongation factor G family;
Translation elongation factors bacterial;
Universal GTPases
fig|6666666.229902.peg.543 CDS CP003099.1 506809 506339 -1 - 471 SSU ribosomal protein S7p (S5e) Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins)
fig|6666666.229902.peg.544 CDS CP003099.1 507099 506962 -3 - 138 SSU ribosomal protein S12p (S23e) Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Ribosomal protein S12p Asp methylthiotransferase
fig|6666666.229902.peg.545 CDS CP003099.1 507394 507278 -1 - 117 SSU ribosomal protein S12p (S23e) Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Ribosomal protein S12p Asp methylthiotransferase
fig|6666666.229902.peg.546 CDS CP003099.1 507857 507558 -2 - 300 Ketol-acid reductoisomerase (EC 1.1.1.86) Coenzyme A Biosynthesis
fig|6666666.229902.peg.547 CDS CP003099.1 508498 508683 1 + 186 HTH-type transcriptional regulator IlvY Alanine biosynthesis;
LysR-family proteins in Escherichia coli;
LysR-family proteins in Salmonella enterica Typhimurium
fig|6666666.229902.peg.548 CDS CP003099.1 508716 509597 3 + 882 Protein rarD - none -
fig|6666666.229902.peg.549 CDS CP003099.1 510392 509592 -2 - 801 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) Chorismate Synthesis;
Cluster containing Alanyl-tRNA synthetase;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229902.peg.550 CDS CP003099.1 510947 510396 -2 - 552 TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA - none -
fig|6666666.229902.peg.551 CDS CP003099.1 511596 510952 -3 - 645 Similar to C-terminal Zn-finger domain of DNA topoisomerase I Conserved gene cluster associated with Met-tRNA formyltransferase;
DNA topoisomerases, Type I, ATP-independent
fig|6666666.229902.peg.552 CDS CP003099.1 511644 513257 3 + 1614 DNA recombination protein RmuC DNA repair, bacterial
fig|6666666.229902.peg.553 CDS CP003099.1 513381 513929 3 + 549 FIG00903983: hypothetical protein - none -
fig|6666666.229902.peg.554 CDS CP003099.1 513941 514267 2 + 327 Thiosulfate sulfurtransferase GlpE (EC 2.8.1.1) Single-Rhodanese-domain proteins
fig|6666666.229902.peg.555 CDS CP003099.1 514593 514279 -3 - 315 Uncharacterized protein PM1437 - none -
fig|6666666.229902.peg.556 CDS CP003099.1 514636 515511 1 + 876 GlpG protein (membrane protein of glp regulon) - none -
fig|6666666.229902.peg.557 CDS CP003099.1 515573 516328 2 + 756 Glycerol-3-phosphate regulon repressor GlpR - none -
fig|6666666.229902.peg.558 CDS CP003099.1 516694 519396 1 + 2703 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229902.peg.559 CDS CP003099.1 521802 519985 -3 - 1818 ABC transporter ATP-binding protein - none -
fig|6666666.229902.peg.560 CDS CP003099.1 521926 523584 1 + 1659 Mediator of hyperadherence YidE - none -
fig|6666666.229902.peg.561 CDS CP003099.1 523683 523552 -3 - 132 hypothetical protein - none -
fig|6666666.229902.peg.562 CDS CP003099.1 523741 524454 1 + 714 Uridine monophosphate kinase (EC 2.7.4.22) CBSS-312309.3.peg.1965;
Ribosome recycling related cluster
fig|6666666.229902.peg.563 CDS CP003099.1 524508 524663 3 + 156 hypothetical protein - none -
fig|6666666.229902.peg.564 CDS CP003099.1 524676 525233 3 + 558 Ribosome recycling factor Ribosome recycling related cluster;
Translation termination factors bacterial
fig|6666666.229902.peg.565 CDS CP003099.1 525262 526545 1 + 1284 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.267) CBSS-83331.1.peg.3039;
Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.229902.peg.566 CDS CP003099.1 526567 527286 1 + 720 Undecaprenyl diphosphate synthase (EC 2.5.1.31) CBSS-83331.1.peg.3039;
Isoprenoid Biosynthesis;
Isoprenoinds for Quinones;
Polyprenyl Diphosphate Biosynthesis
fig|6666666.229902.peg.567 CDS CP003099.1 527301 528170 3 + 870 Phosphatidate cytidylyltransferase (EC 2.7.7.41) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229902.peg.568 CDS CP003099.1 528179 529513 2 + 1335 Membrane-associated zinc metalloprotease - none -
fig|6666666.229902.peg.569 CDS CP003099.1 529532 531943 2 + 2412 Outer membrane protein assembly factor YaeT precursor Lipopolysaccharide assembly;
Llipid A biosynthesis cluster
fig|6666666.229902.peg.570 CDS CP003099.1 532046 532621 2 + 576 Outer membrane chaperone Skp (OmpH) precursor @ Outer membrane protein H precursor Lipopolysaccharide assembly;
Llipid A biosynthesis cluster;
Periplasmic Stress Response
fig|6666666.229902.peg.571 CDS CP003099.1 532621 533637 1 + 1017 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC 2.3.1.191) - none -
fig|6666666.229902.peg.572 CDS CP003099.1 533779 534189 1 + 411 3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabZ form (EC 4.2.1.59) Fatty Acid Biosynthesis FASII;
Llipid A biosynthesis cluster
fig|6666666.229902.peg.573 CDS CP003099.1 534210 534998 3 + 789 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase (EC 2.3.1.129) KDO2-Lipid A biosynthesis;
Llipid A biosynthesis cluster
fig|6666666.229902.peg.574 CDS CP003099.1 535083 536267 3 + 1185 Lipid-A-disaccharide synthase (EC 2.4.1.182) KDO2-Lipid A biosynthesis;
Llipid A biosynthesis cluster
fig|6666666.229902.peg.575 CDS CP003099.1 536260 536859 1 + 600 Ribonuclease HII (EC 3.1.26.4) Conserved gene cluster associated with Met-tRNA formyltransferase;
Ribonuclease H
fig|6666666.229902.peg.576 CDS CP003099.1 536899 538767 1 + 1869 Putative transport protein - none -
fig|6666666.229902.peg.577 CDS CP003099.1 538778 539386 2 + 609 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229902.peg.578 CDS CP003099.1 539397 539618 3 + 222 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229902.peg.579 CDS CP003099.1 539647 540228 1 + 582 Molybdopterin biosynthesis molybdochelatase MogA Molybdenum cofactor biosynthesis
fig|6666666.229902.peg.580 CDS CP003099.1 540907 540791 -1 - 117 hypothetical protein - none -
fig|6666666.229902.peg.582 CDS CP003099.1 547510 548463 1 + 954 Transaldolase (EC 2.2.1.2) Fructose utilization;
Pentose phosphate pathway
fig|6666666.229902.peg.583 CDS CP003099.1 548596 550593 1 + 1998 Transketolase (EC 2.2.1.1) Pentose phosphate pathway
fig|6666666.229902.peg.584 CDS CP003099.1 551054 550665 -2 - 390 Endoribonuclease L-PSP - none -
fig|6666666.229902.peg.585 CDS CP003099.1 551589 551131 -3 - 459 Regulatory protein RecX DNA repair system including RecA, MutS and a hypothetical protein;
RecA and RecX
fig|6666666.229902.peg.586 CDS CP003099.1 552729 551671 -3 - 1059 RecA protein DNA repair, bacterial;
DNA repair, bacterial RecFOR pathway;
DNA repair system including RecA, MutS and a hypothetical protein;
RecA and RecX
fig|6666666.229902.peg.587 CDS CP003099.1 553341 552877 -3 - 465 Glutathione-regulated potassium-efflux system ATP-binding protein Potassium homeostasis
fig|6666666.229902.peg.588 CDS CP003099.1 554764 553313 -1 - 1452 Glutathione-regulated potassium-efflux system ATP-binding protein Potassium homeostasis
fig|6666666.229902.peg.589 CDS CP003099.1 554845 555462 1 + 618 Multiple antibiotic resistance protein marC - none -
fig|6666666.229902.peg.590 CDS CP003099.1 555568 558303 1 + 2736 Putative uncharacterized protein ydbH - none -
fig|6666666.229902.peg.591 CDS CP003099.1 558300 558530 3 + 231 hypothetical protein - none -
fig|6666666.229902.peg.592 CDS CP003099.1 559330 559887 1 + 558 Integrase - none -
fig|6666666.229902.peg.593 CDS CP003099.1 560030 560389 2 + 360 Mobile element protein - none -
fig|6666666.229902.peg.594 CDS CP003099.1 560876 561547 2 + 672 Deoxyribose-phosphate aldolase (EC 4.1.2.4) Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.229902.peg.595 CDS CP003099.1 561575 562324 2 + 750 Deoxyribose operon repressor, DeoR family Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.229902.peg.596 CDS CP003099.1 562462 563553 1 + 1092 Putative exported protein precursor - none -
fig|6666666.229902.peg.597 CDS CP003099.1 565073 563703 -2 - 1371 N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23) / Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157) Peptidoglycan Biosynthesis;
Peptidoglycan Biosynthesis;
Sialic Acid Metabolism;
Sialic Acid Metabolism;
Transcription repair cluster;
Transcription repair cluster;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229902.peg.598 CDS CP003099.1 565159 566289 1 + 1131 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) Recycling of Peptidoglycan Amino Sugars
fig|6666666.229902.peg.599 CDS CP003099.1 566286 567200 3 + 915 N-acetylmuramic acid 6-phosphate etherase - none -
fig|6666666.229902.peg.600 CDS CP003099.1 568585 568439 -1 - 147 hypothetical protein - none -
fig|6666666.229902.peg.601 CDS CP003099.1 569142 570506 3 + 1365 lipoprotein, putative - none -
fig|6666666.229902.peg.602 CDS CP003099.1 570631 571926 1 + 1296 Glycine/D-amino acid oxidases (deaminating) - none -
fig|6666666.229902.peg.603 CDS CP003099.1 572052 572831 3 + 780 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain - none -
fig|6666666.229902.peg.604 CDS CP003099.1 572815 573537 1 + 723 L-Cystine ABC transporter, permease protein TcyB - none -
fig|6666666.229902.peg.605 CDS CP003099.1 573547 574314 1 + 768 ABC-type polar amino acid transport system, ATPase component CBSS-326442.4.peg.1852
fig|6666666.229902.peg.606 CDS CP003099.1 574606 574319 -1 - 288 tRNA 5-methylaminomethyl-2-thiouridine synthase TusB Sulfite reduction-associated complex DsrMKJOP and co-clustering genes;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.229902.peg.607 CDS CP003099.1 574971 574609 -3 - 363 tRNA 5-methylaminomethyl-2-thiouridine synthase TusC CBSS-326442.4.peg.1852;
Sulfite reduction-associated complex DsrMKJOP and co-clustering genes;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.229902.peg.608 CDS CP003099.1 575345 574968 -2 - 378 tRNA 5-methylaminomethyl-2-thiouridine synthase TusD CBSS-326442.4.peg.1852;
Sulfite reduction-associated complex DsrMKJOP and co-clustering genes;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.229902.peg.609 CDS CP003099.1 576017 575349 -2 - 669 YheO-like PAS domain - none -
fig|6666666.229902.peg.610 CDS CP003099.1 576822 576097 -3 - 726 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase;
Potassium homeostasis
fig|6666666.229902.peg.611 CDS CP003099.1 576917 577132 2 + 216 Protein SlyX - none -
fig|6666666.229902.peg.612 CDS CP003099.1 577921 577193 -1 - 729 Peroxiredoxin family protein/glutaredoxin - none -
fig|6666666.229902.peg.613 CDS CP003099.1 578080 578979 1 + 900 Hydrogen peroxide-inducible genes activator LysR-family proteins in Escherichia coli;
LysR-family proteins in Salmonella enterica Typhimurium;
Oxidative stress;
Thioredoxin-disulfide reductase
fig|6666666.229902.peg.614 CDS CP003099.1 578991 579611 3 + 621 Unsaturated fatty acid biosythesis repressor FabR, TetR family - none -
fig|6666666.229902.peg.615 CDS CP003099.1 581357 579723 -2 - 1635 ABC transporter ATP-binding protein - none -
fig|6666666.229902.peg.616 CDS CP003099.1 583122 581374 -3 - 1749 Transport ATP-binding protein CydD Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229902.peg.617 CDS CP003099.1 584612 583290 -2 - 1323 Anaerobic C4-dicarboxylate membrane transporter DcuA - none -
fig|6666666.229902.peg.618 CDS CP003099.1 584958 585380 3 + 423 FIG136845: Rhodanese-related sulfurtransferase Glutaredoxin 3 containing cluster
fig|6666666.229902.peg.619 CDS CP003099.1 585396 585908 3 + 513 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) Glutaredoxin 3 containing cluster
fig|6666666.229902.peg.620 CDS CP003099.1 585986 586999 2 + 1014 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) Glutaredoxin 3 containing cluster;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229902.peg.621 CDS CP003099.1 587002 587799 1 + 798 Serine acetyltransferase (EC 2.3.1.30) Cysteine Biosynthesis;
Methionine Biosynthesis
fig|6666666.229902.peg.622 CDS CP003099.1 589452 588439 -3 - 1014 Fructose-1,6-bisphosphatase, GlpX type (EC 3.1.3.11) Glycolysis and Gluconeogenesis
fig|6666666.229902.peg.623 CDS CP003099.1 589648 589866 1 + 219 FIG074102: hypothetical protein - none -
fig|6666666.229902.peg.624 CDS CP003099.1 589923 590366 3 + 444 Flavoprotein MioC Flavodoxin
fig|6666666.229902.peg.625 CDS CP003099.1 590809 592698 1 + 1890 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA Cell Division Subsystem including YidCD;
RNA modification and chromosome partitioning cluster;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229902.peg.626 CDS CP003099.1 593727 592969 -3 - 759 NADPH:quinone oxidoreductase 2 NADPH:quinone oxidoreductase 2
fig|6666666.229902.peg.627 CDS CP003099.1 593978 594340 2 + 363 Redox-sensing transcriptional regulator QorR NADPH:quinone oxidoreductase 2
fig|6666666.229902.peg.628 CDS CP003099.1 594333 595043 3 + 711 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB Cell Division Subsystem including YidCD;
RNA methylation;
RNA modification and chromosome partitioning cluster
fig|6666666.229902.peg.629 CDS CP003099.1 595127 595504 2 + 378 FIG048548: ATP synthase protein I2 - none -
fig|6666666.229902.peg.630 CDS CP003099.1 595529 596317 2 + 789 ATP synthase F0 sector subunit a - none -
fig|6666666.229902.peg.631 CDS CP003099.1 596371 596625 1 + 255 ATP synthase F0 sector subunit c (EC 3.6.3.14) - none -
fig|6666666.229902.peg.632 CDS CP003099.1 596675 597145 2 + 471 ATP synthase F0 sector subunit b - none -
fig|6666666.229902.peg.633 CDS CP003099.1 597159 597707 3 + 549 ATP synthase delta chain (EC 3.6.3.14) - none -
fig|6666666.229902.peg.634 CDS CP003099.1 597720 599261 3 + 1542 ATP synthase alpha chain (EC 3.6.3.14) - none -
fig|6666666.229902.peg.635 CDS CP003099.1 599277 600146 3 + 870 ATP synthase gamma chain (EC 3.6.3.14) - none -
fig|6666666.229902.peg.636 CDS CP003099.1 600163 601536 1 + 1374 ATP synthase beta chain (EC 3.6.3.14) - none -
fig|6666666.229902.peg.637 CDS CP003099.1 601578 602006 3 + 429 ATP synthase epsilon chain (EC 3.6.3.14) - none -
fig|6666666.229902.peg.638 CDS CP003099.1 603113 602067 -2 - 1047 ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1) Polyamine Metabolism
fig|6666666.229902.peg.639 CDS CP003099.1 603118 603261 1 + 144 hypothetical protein - none -
fig|6666666.229902.peg.640 CDS CP003099.1 603419 605548 2 + 2130 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229902.peg.641 CDS CP003099.1 605613 606395 3 + 783 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229902.peg.642 CDS CP003099.1 606444 607433 3 + 990 Putative DNA-binding protein in cluster with Type I restriction-modification system Restriction-Modification System
fig|6666666.229902.peg.643 CDS CP003099.1 607642 608772 1 + 1131 Type I restriction-modification system, specificity subunit S (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229902.peg.644 CDS CP003099.1 608873 610477 2 + 1605 Type I restriction-modification system, DNA-methyltransferase subunit M (EC 2.1.1.72) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229902.peg.645 CDS CP003099.1 611494 610658 -1 - 837 PTS system, mannose-specific IID component - none -
fig|6666666.229902.peg.646 CDS CP003099.1 612313 611510 -1 - 804 PTS system, mannose-specific IIC component - none -
fig|6666666.229902.peg.647 CDS CP003099.1 613323 612325 -3 - 999 PTS system, mannose-specific IIA component (EC 2.7.1.69) / PTS system, mannose-specific IIB component (EC 2.7.1.69) Mannose Metabolism;
Mannose Metabolism;
Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229902.peg.648 CDS CP003099.1 613472 613588 2 + 117 hypothetical protein - none -
fig|6666666.229902.peg.649 CDS CP003099.1 613609 615066 1 + 1458 Permeases of the major facilitator superfamily - none -
fig|6666666.229902.peg.650 CDS CP003099.1 616265 615093 -2 - 1173 Xylose activator XylR (AraC family) Xylose utilization
fig|6666666.229902.peg.651 CDS CP003099.1 616254 616376 3 + 123 hypothetical protein - none -
fig|6666666.229902.peg.652 CDS CP003099.1 617726 616380 -2 - 1347 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229902.peg.653 CDS CP003099.1 618975 617779 -3 - 1197 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229902.peg.654 CDS CP003099.1 620191 619064 -1 - 1128 Xylose ABC transporter, permease protein XylH Xylose utilization
fig|6666666.229902.peg.655 CDS CP003099.1 621706 620195 -1 - 1512 D-xylose transport ATP-binding protein XylG Xylose utilization
fig|6666666.229902.peg.656 CDS CP003099.1 622677 621766 -3 - 912 Xylose ABC transporter, periplasmic xylose-binding protein XylF Xylose utilization
fig|6666666.229902.peg.657 CDS CP003099.1 623018 624337 2 + 1320 Xylose isomerase (EC 5.3.1.5) Xylose utilization
fig|6666666.229902.peg.658 CDS CP003099.1 624387 625859 3 + 1473 Xylulose kinase (EC 2.7.1.17) Xylose utilization
fig|6666666.229902.peg.659 CDS CP003099.1 626501 626674 2 + 174 hypothetical protein - none -
fig|6666666.229902.peg.660 CDS CP003099.1 626671 627477 1 + 807 Mobile element protein - none -
fig|6666666.229902.peg.661 CDS CP003099.1 628884 627517 -3 - 1368 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229902.peg.662 CDS CP003099.1 629069 630145 2 + 1077 hypothetical tRNA/rRNA methyltransferase yfiF [EC:2.1.1.-] RNA methylation;
tRNA modification Bacteria
fig|6666666.229902.peg.663 CDS CP003099.1 630432 630211 -3 - 222 4Fe-4S ferredoxin, iron-sulfur binding - none -
fig|6666666.229902.peg.664 CDS CP003099.1 630539 631234 2 + 696 Probable ribonuclease HI0526 precursor - none -
fig|6666666.229902.peg.665 CDS CP003099.1 631347 632510 3 + 1164 Phosphoglycerate kinase (EC 2.7.2.3) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis
fig|6666666.229902.peg.666 CDS CP003099.1 632575 633654 1 + 1080 Fructose-bisphosphate aldolase class II (EC 4.1.2.13) Glycolysis and Gluconeogenesis
fig|6666666.229902.peg.667 CDS CP003099.1 633828 633667 -3 - 162 hypothetical protein - none -
fig|6666666.229902.peg.668 CDS CP003099.1 633862 635004 1 + 1143 O-antigen ligase LOS core oligosaccharide biosynthesis
fig|6666666.229902.peg.669 CDS CP003099.1 634997 635920 2 + 924 Lysophospholipase L2 (EC 3.1.1.5) Triacylglycerol metabolism
fig|6666666.229902.peg.670 CDS CP003099.1 636776 635958 -2 - 819 Cof protein, HD superfamily hydrolase Housecleaning nucleoside triphosphate pyrophosphatases
fig|6666666.229902.peg.671 CDS CP003099.1 637063 637947 1 + 885 Acetolactate synthase large subunit (EC 2.2.1.6) - none -
fig|6666666.229902.peg.672 CDS CP003099.1 638021 638428 2 + 408 Threonine dehydratase biosynthetic (EC 4.3.1.19) - none -
fig|6666666.229902.peg.673 CDS CP003099.1 638479 638895 1 + 417 Threonine dehydratase biosynthetic (EC 4.3.1.19) - none -
fig|6666666.229902.peg.674 CDS CP003099.1 639964 639029 -1 - 936 Cell division protein FtsX Bacterial Cell Division
fig|6666666.229902.peg.675 CDS CP003099.1 640623 639973 -3 - 651 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) Bacterial Cell Division
fig|6666666.229902.peg.676 CDS CP003099.1 641577 640903 -3 - 675 Phosphoglycolate phosphatase (EC 3.1.3.18) 2-phosphoglycolate salvage;
Glycolate, glyoxylate interconversions
fig|6666666.229902.peg.677 CDS CP003099.1 642254 641580 -2 - 675 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) Conserved gene cluster associated with Met-tRNA formyltransferase;
Pentose phosphate pathway;
Riboflavin synthesis cluster
fig|6666666.229902.peg.678 CDS CP003099.1 642406 642684 1 + 279 Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage Bacterial Cell Division;
Bacterial Cytoskeleton;
Cell division-ribosomal stress proteins cluster;
Stationary phase repair cluster
fig|6666666.229902.peg.679 CDS CP003099.1 642684 643379 3 + 696 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC 2.7.7.60) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis;
Stationary phase repair cluster
fig|6666666.229902.peg.680 CDS CP003099.1 643376 643855 2 + 480 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis;
Stationary phase repair cluster
fig|6666666.229902.peg.681 CDS CP003099.1 643852 644862 1 + 1011 tRNA pseudouridine 13 synthase (EC 4.2.1.-) Stationary phase repair cluster;
tRNA modification Archaea;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229902.peg.682 CDS CP003099.1 644895 645635 3 + 741 5-nucleotidase SurE (EC 3.1.3.5) @ Exopolyphosphatase (EC 3.6.1.11) Housecleaning nucleoside triphosphate pyrophosphatases;
Phosphate metabolism;
Polyphosphate;
Stationary phase repair cluster
fig|6666666.229902.peg.683 CDS CP003099.1 645663 646238 3 + 576 FIG139438: lipoprotein B Stationary phase repair cluster
fig|6666666.229902.peg.684 CDS CP003099.1 646253 646444 2 + 192 Cobalamin biosynthesis protein CobN and related Mg-chelatases - none -
fig|6666666.229902.peg.685 CDS CP003099.1 646461 647630 3 + 1170 Lipoprotein NlpD Stationary phase repair cluster
fig|6666666.229902.peg.686 CDS CP003099.1 648054 647875 -3 - 180 hypothetical protein - none -
fig|6666666.229902.peg.687 CDS CP003099.1 649088 648327 -2 - 762 Lipopolysaccharide biosynthesis glycosyltransferase - none -
fig|6666666.229902.peg.688 CDS CP003099.1 649187 650470 2 + 1284 3-deoxy-D-manno-octulosonic-acid transferase (EC 2.-.-.-) KDO2-Lipid A biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.229902.peg.689 CDS CP003099.1 650471 650956 2 + 486 Phosphopantetheine adenylyltransferase (EC 2.7.7.3) CBSS-266117.6.peg.1260;
CBSS-269801.1.peg.1715;
Coenzyme A Biosynthesis
fig|6666666.229902.peg.690 CDS CP003099.1 651743 651018 -2 - 726 3-deoxy-D-manno-octulosonic acid kinase (EC 2.7.1.-) - none -
fig|6666666.229902.peg.691 CDS CP003099.1 651832 652875 1 + 1044 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) LOS core oligosaccharide biosynthesis
fig|6666666.229902.peg.692 CDS CP003099.1 653313 652972 -3 - 342 Possible carboxymuconolactone decarboxylase family protein (EC 4.1.1.44) - none -
fig|6666666.229902.peg.693 CDS CP003099.1 653417 654334 2 + 918 transcriptional regulator MtrA - none -
fig|6666666.229902.peg.694 CDS CP003099.1 654422 656266 2 + 1845 Lipid A export ATP-binding/permease protein MsbA - none -
fig|6666666.229902.peg.695 CDS CP003099.1 658745 656307 -2 - 2439 Glycerol-3-phosphate acyltransferase (EC 2.3.1.15) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229902.peg.696 CDS CP003099.1 658953 659576 3 + 624 SOS-response repressor and protease LexA (EC 3.4.21.88) DNA repair, bacterial
fig|6666666.229902.peg.697 CDS CP003099.1 659728 660105 1 + 378 SSU ribosomal protein S6p Primosomal replication protein N clusters with ribosomal proteins
fig|6666666.229902.peg.698 CDS CP003099.1 660092 660418 2 + 327 Primosomal replication protein N Primosomal replication protein N clusters with ribosomal proteins
fig|6666666.229902.peg.699 CDS CP003099.1 660431 660661 2 + 231 SSU ribosomal protein S18p @ SSU ribosomal protein S18p, zinc-independent Primosomal replication protein N clusters with ribosomal proteins
fig|6666666.229902.peg.700 CDS CP003099.1 660677 661126 2 + 450 LSU ribosomal protein L9p Primosomal replication protein N clusters with ribosomal proteins
fig|6666666.229902.peg.701 CDS CP003099.1 661346 662464 2 + 1119 Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake CBSS-272943.3.peg.1367;
Conserved gene cluster associated with Met-tRNA formyltransferase;
YrdC-YciO-Sua5 protein family
fig|6666666.229902.peg.702 CDS CP003099.1 663602 662505 -2 - 1098 Glycerophosphoryl diester phosphodiesterase, periplasmic (EC 3.1.4.46) - none -
fig|6666666.229902.peg.703 CDS CP003099.1 665278 663836 -1 - 1443 Glycerol-3-phosphate transporter - none -
fig|6666666.229902.peg.704 CDS CP003099.1 665468 665298 -2 - 171 hypothetical protein - none -
fig|6666666.229902.peg.705 CDS CP003099.1 666348 665611 -3 - 738 23S rRNA (guanosine-2@1-O-) -methyltransferase rlmB (EC 2.1.1.-) RNA methylation
fig|6666666.229902.peg.706 CDS CP003099.1 668751 666478 -3 - 2274 3@1-to-5@1 exoribonuclease RNase R RNA processing and degradation, bacterial
fig|6666666.229902.peg.707 CDS CP003099.1 669001 670056 1 + 1056 Rod shape-determining protein MreB Bacterial Cell Division;
Bacterial Cytoskeleton
fig|6666666.229902.peg.708 CDS CP003099.1 670126 671199 1 + 1074 Rod shape-determining protein MreC Bacterial Cell Division;
Bacterial Cytoskeleton;
CBSS-354.1.peg.2917
fig|6666666.229902.peg.709 CDS CP003099.1 671199 671687 3 + 489 Rod shape-determining protein MreD Bacterial Cell Division;
Bacterial Cytoskeleton;
CBSS-354.1.peg.2917
fig|6666666.229902.peg.710 CDS CP003099.1 672147 671797 -3 - 351 LSU ribosomal protein L19p - none -
fig|6666666.229902.peg.711 CDS CP003099.1 672922 672173 -1 - 750 tRNA (Guanine37-N1) -methyltransferase (EC 2.1.1.31) RNA methylation;
Ribosome biogenesis bacterial;
tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229902.peg.712 CDS CP003099.1 673515 672988 -3 - 528 16S rRNA processing protein RimM Ribosome biogenesis bacterial
fig|6666666.229902.peg.713 CDS CP003099.1 673789 673541 -1 - 249 SSU ribosomal protein S16p - none -
fig|6666666.229902.peg.714 CDS CP003099.1 673975 674130 1 + 156 hypothetical protein - none -
fig|6666666.229902.peg.715 CDS CP003099.1 675586 674285 -1 - 1302 Xaa-Pro aminopeptidase (EC 3.4.11.9) Aminopeptidases (EC 3.4.11.-);
CBSS-87626.3.peg.3639
fig|6666666.229902.peg.716 CDS CP003099.1 676149 675601 -3 - 549 FIG001590: Putative conserved exported protein precursor CBSS-87626.3.peg.3639
fig|6666666.229902.peg.717 CDS CP003099.1 676308 676634 3 + 327 Z-ring-associated protein ZapA Bacterial Cytoskeleton
fig|6666666.229902.peg.718 CDS CP003099.1 676928 677503 2 + 576 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) 5-FCL-like protein;
Folate Biosynthesis;
One-carbon metabolism by tetrahydropterines;
Serine-glyoxylate cycle
fig|6666666.229902.peg.719 CDS CP003099.1 678327 677539 -3 - 789 Probable component of the lipoprotein assembly complex (forms a complex with YaeT, YfgL, and NlpB) Lipopolysaccharide assembly
fig|6666666.229902.peg.720 CDS CP003099.1 678434 679408 2 + 975 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) RNA pseudouridine syntheses;
Ribosome biogenesis bacterial
fig|6666666.229902.peg.721 CDS CP003099.1 679410 680147 3 + 738 COG1496: Uncharacterized conserved protein - none -
fig|6666666.229902.peg.722 CDS CP003099.1 680778 680317 -3 - 462 Phosphoglycerol transferase I (EC 2.7.8.20) Synthesis of osmoregulated periplasmic glucans
fig|6666666.229902.peg.723 CDS CP003099.1 682112 680775 -2 - 1338 Phosphoglycerol transferase I (EC 2.7.8.20) Synthesis of osmoregulated periplasmic glucans
fig|6666666.229902.peg.724 CDS CP003099.1 683012 682353 -2 - 660 Oxygen-insensitive NAD(P)H nitroreductase (EC 1.-.-.-) / Dihydropteridine reductase (EC 1.5.1.34) - none -
fig|6666666.229902.peg.725 CDS CP003099.1 683422 683129 -1 - 294 COG1872 - none -
fig|6666666.229902.peg.726 CDS CP003099.1 684007 683447 -1 - 561 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) CBSS-630.2.peg.3360
fig|6666666.229902.peg.727 CDS CP003099.1 684241 684023 -1 - 219 Magnesium and cobalt transport protein CorA Magnesium transport
fig|6666666.229902.peg.728 CDS CP003099.1 684969 684262 -3 - 708 Magnesium and cobalt transport protein CorA Magnesium transport
fig|6666666.229902.peg.729 CDS CP003099.1 686423 685623 -2 - 801 Orf2 - none -
fig|6666666.229902.peg.730 CDS CP003099.1 689675 686577 -2 - 3099 RND multidrug efflux transporter; Acriflavin resistance protein Multidrug Resistance Efflux Pumps
fig|6666666.229902.peg.731 CDS CP003099.1 691476 689689 -3 - 1788 Probable Co/Zn/Cd efflux system membrane fusion protein Cobalt-zinc-cadmium resistance
fig|6666666.229902.peg.732 CDS CP003099.1 692488 691676 -1 - 813 Cell division protein - none -
fig|6666666.229902.peg.733 CDS CP003099.1 694796 692598 -2 - 2199 Helicase PriA essential for oriC/DnaA-independent DNA replication Conserved gene cluster associated with Met-tRNA formyltransferase
fig|6666666.229902.peg.734 CDS CP003099.1 695024 695770 2 + 747 Involved in lipopolysaccharide biosynthesis - none -
fig|6666666.229902.peg.735 CDS CP003099.1 696588 695893 -3 - 696 putative capsular polysaccharide synthesis protein - none -
fig|6666666.229902.peg.736 CDS CP003099.1 697751 697020 -2 - 732 Lipooligosaccharide biosynthesis protein lex-1 (EC 2.-.-.-) - none -
fig|6666666.229902.peg.737 CDS CP003099.1 698008 698220 1 + 213 LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-dependent - none -
fig|6666666.229902.peg.738 CDS CP003099.1 698283 698975 3 + 693 Beta-1,4-galactosyltransferase LOS core oligosaccharide biosynthesis
fig|6666666.229902.peg.739 CDS CP003099.1 698976 699998 3 + 1023 COG0859: ADP-heptose:LPS heptosyltransferase - none -
fig|6666666.229902.peg.740 CDS CP003099.1 700077 700409 3 + 333 COG0859: ADP-heptose:LPS heptosyltransferase - none -
fig|6666666.229902.peg.741 CDS CP003099.1 700472 701059 2 + 588 COG0859: ADP-heptose:LPS heptosyltransferase - none -
fig|6666666.229902.peg.742 CDS CP003099.1 701919 701062 -3 - 858 Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) DNA Repair Base Excision
fig|6666666.229902.peg.743 CDS CP003099.1 702129 701959 -3 - 171 LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-independent - none -
fig|6666666.229902.peg.744 CDS CP003099.1 702314 702141 -2 - 174 LSU ribosomal protein L28p - none -
fig|6666666.229902.peg.745 CDS CP003099.1 703245 702586 -3 - 660 DNA repair protein RadC DNA repair, bacterial
fig|6666666.229902.peg.746 CDS CP003099.1 703423 704622 1 + 1200 Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) / Phosphopantothenoylcysteine synthetase (EC 6.3.2.5) Coenzyme A Biosynthesis;
Coenzyme A Biosynthesis
fig|6666666.229902.peg.747 CDS CP003099.1 704691 705146 3 + 456 Deoxyuridine 5@1-triphosphate nucleotidohydrolase (EC 3.6.1.23) Housecleaning nucleoside triphosphate pyrophosphatases;
Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229902.peg.748 CDS CP003099.1 705146 705745 2 + 600 Transcriptional regulator SlmA, TetR family - none -
fig|6666666.229902.peg.749 CDS CP003099.1 705769 705987 1 + 219 FIG00696234: hypothetical protein - none -
fig|6666666.229902.peg.750 CDS CP003099.1 706025 706669 2 + 645 Cyclic AMP receptor protein cAMP signaling in bacteria
fig|6666666.229902.peg.751 CDS CP003099.1 708172 706802 -1 - 1371 Glutathione reductase (EC 1.8.1.7) Glutathione: Redox cycle
fig|6666666.229902.peg.752 CDS CP003099.1 709112 708267 -2 - 846 Protein involved in catabolism of external DNA DNA processing cluster;
DNA uptake cluster
fig|6666666.229902.peg.753 CDS CP003099.1 711774 709207 -3 - 2568 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) DNA uptake cluster;
Peptidoglycan Biosynthesis;
Type IV pilus
fig|6666666.229902.peg.754 CDS CP003099.1 711908 712717 2 + 810 Type IV pilus biogenesis protein PilM; Competence protein A DNA uptake cluster;
Type IV pilus
fig|6666666.229902.peg.755 CDS CP003099.1 712728 713246 3 + 519 Type IV pilus biogenesis protein PilN; Competence protein B DNA uptake cluster;
Type IV pilus
fig|6666666.229902.peg.756 CDS CP003099.1 713243 713767 2 + 525 Competence protein C; Chromosome segregation ATPases DNA uptake cluster
fig|6666666.229902.peg.757 CDS CP003099.1 713767 714159 1 + 393 Type IV pilus biogenesis protein PilQ; Competence protein D DNA uptake cluster;
Type IV pilus
fig|6666666.229902.peg.758 CDS CP003099.1 714179 715588 2 + 1410 Type IV pilus biogenesis protein PilQ; Competence protein E DNA uptake cluster;
Type IV pilus
fig|6666666.229902.peg.759 CDS CP003099.1 715802 716329 2 + 528 Shikimate kinase I (EC 2.7.1.71) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229902.peg.760 CDS CP003099.1 716353 717441 1 + 1089 3-dehydroquinate synthase (EC 4.2.3.4) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate);
Type IV pilus
fig|6666666.229902.peg.761 CDS CP003099.1 717444 718298 3 + 855 Methyl-directed repair DNA adenine methylase (EC 2.1.1.72) DNA repair, bacterial
fig|6666666.229902.peg.762 CDS CP003099.1 718883 718404 -2 - 480 Single-stranded DNA-binding protein DNA repair, bacterial;
DNA repair, bacterial RecFOR pathway
fig|6666666.229902.peg.763 CDS CP003099.1 719053 721884 1 + 2832 Excinuclease ABC subunit A DNA repair, UvrABC system
fig|6666666.229902.peg.764 CDS CP003099.1 722157 722330 3 + 174 hypothetical protein - none -
fig|6666666.229902.peg.765 CDS CP003099.1 722327 723133 2 + 807 Mobile element protein - none -
fig|6666666.229902.peg.766 CDS CP003099.1 723550 724407 1 + 858 Methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5) / Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9) 5-FCL-like protein;
One-carbon metabolism by tetrahydropterines;
One-carbon metabolism by tetrahydropterines;
Serine-glyoxylate cycle;
Serine-glyoxylate cycle
fig|6666666.229902.peg.767 CDS CP003099.1 726139 724496 -1 - 1644 Heat shock protein 60 family chaperone GroEL GroEL GroES
fig|6666666.229902.peg.768 CDS CP003099.1 726550 726260 -1 - 291 Heat shock protein 60 family co-chaperone GroES GroEL GroES
fig|6666666.229902.peg.769 CDS CP003099.1 727119 726637 -3 - 483 FxsA protein - none -
fig|6666666.229902.peg.770 CDS CP003099.1 727348 727734 1 + 387 Aspartate ammonia-lyase (EC 4.3.1.1) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229902.peg.771 CDS CP003099.1 727685 728767 2 + 1083 Aspartate ammonia-lyase (EC 4.3.1.1) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229902.peg.772 CDS CP003099.1 728949 729986 3 + 1038 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) LOS core oligosaccharide biosynthesis
fig|6666666.229902.peg.773 CDS CP003099.1 730155 729958 -3 - 198 hypothetical protein - none -
fig|6666666.229902.peg.774 CDS CP003099.1 730348 730202 -1 - 147 Integral membrane protein - none -
fig|6666666.229902.peg.775 CDS CP003099.1 731477 730893 -2 - 585 Hydrolase, haloacid dehalogenase-like family - none -
fig|6666666.229902.peg.776 CDS CP003099.1 732202 731573 -1 - 630 Mobile element protein - none -
fig|6666666.229902.peg.777 CDS CP003099.1 732597 732737 3 + 141 hypothetical protein - none -
fig|6666666.229902.peg.778 CDS CP003099.1 733626 733381 -3 - 246 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229902.peg.779 CDS CP003099.1 733931 733704 -2 - 228 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229902.peg.781 CDS CP003099.1 740298 739786 -3 - 513 Protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-) Heme and Siroheme Biosynthesis;
Transport system clustering with HemG
fig|6666666.229902.peg.782 CDS CP003099.1 741761 740298 -2 - 1464 Potassium uptake protein TrkH Hyperosmotic potassium uptake;
Potassium homeostasis;
Potassium homeostasis;
Transport system clustering with HemG
fig|6666666.229902.peg.783 CDS CP003099.1 742299 742027 -3 - 273 FIG000605: protein co-occurring with transport systems (COG1739) Transport system clustering with HemG
fig|6666666.229902.peg.784 CDS CP003099.1 742387 742632 1 + 246 tRNA 5-methylaminomethyl-2-thiouridine synthase TusA mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.229902.peg.785 CDS CP003099.1 742952 744223 2 + 1272 Nicotinamide-nucleotide adenylyltransferase, NadR family (EC 2.7.7.1) / Ribosylnicotinamide kinase (EC 2.7.1.22) NAD and NADP cofactor biosynthesis global;
NAD and NADP cofactor biosynthesis global
fig|6666666.229902.peg.786 CDS CP003099.1 744239 744922 2 + 684 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases - none -
fig|6666666.229902.peg.787 CDS CP003099.1 745052 746281 2 + 1230 Tyrosine-specific transport protein - none -
fig|6666666.229902.peg.788 CDS CP003099.1 747692 747303 -2 - 390 LSU ribosomal protein L17p - none -
fig|6666666.229902.peg.789 CDS CP003099.1 748723 747734 -1 - 990 DNA-directed RNA polymerase alpha subunit (EC 2.7.7.6) RNA polymerase bacterial
fig|6666666.229902.peg.790 CDS CP003099.1 749371 748859 -1 - 513 SSU ribosomal protein S4p (S9e) - none -
fig|6666666.229902.peg.791 CDS CP003099.1 749790 749401 -3 - 390 SSU ribosomal protein S11p (S14e) - none -
fig|6666666.229902.peg.792 CDS CP003099.1 750162 749806 -3 - 357 SSU ribosomal protein S13p (S18e) - none -
fig|6666666.229902.peg.793 CDS CP003099.1 750417 750304 -3 - 114 LSU ribosomal protein L36p - none -
fig|6666666.229902.peg.794 CDS CP003099.1 751768 750443 -1 - 1326 Preprotein translocase secY subunit (TC 3.A.5.1.1) - none -
fig|6666666.229902.peg.795 CDS CP003099.1 752206 751772 -1 - 435 LSU ribosomal protein L15p (L27Ae) - none -
fig|6666666.229902.peg.796 CDS CP003099.1 752896 752396 -1 - 501 SSU ribosomal protein S5p (S2e) - none -
fig|6666666.229902.peg.797 CDS CP003099.1 753217 752912 -1 - 306 LSU ribosomal protein L18p (L5e) - none -
fig|6666666.229902.peg.798 CDS CP003099.1 753812 753279 -2 - 534 LSU ribosomal protein L6p (L9e) - none -
fig|6666666.229902.peg.799 CDS CP003099.1 754220 753828 -2 - 393 SSU ribosomal protein S8p (S15Ae) - none -
fig|6666666.229902.peg.800 CDS CP003099.1 755003 754575 -2 - 429 LSU ribosomal protein L5p (L11e) - none -
fig|6666666.229902.peg.801 CDS CP003099.1 755443 755132 -1 - 312 LSU ribosomal protein L24p (L26e) - none -
fig|6666666.229902.peg.802 CDS CP003099.1 758474 756840 -2 - 1635 CTP synthase (EC 6.3.4.2) CTP synthase (EC 6.3.4.2) cluster;
pyrimidine conversions
fig|6666666.229902.peg.803 CDS CP003099.1 758588 760003 2 + 1416 Branched-chain amino acid transport system carrier protein - none -
fig|6666666.229902.peg.804 CDS CP003099.1 760152 760313 3 + 162 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) / Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) Riboflavin synthesis cluster
fig|6666666.229902.peg.805 CDS CP003099.1 761084 760500 -2 - 585 NfuA Fe-S protein maturation Biotin biosynthesis Experimental;
DNA uptake cluster
fig|6666666.229902.peg.806 CDS CP003099.1 761887 761201 -1 - 687 Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy Biotin biosynthesis Experimental;
Biotin synthesis cluster;
CBSS-216591.1.peg.168
fig|6666666.229902.peg.807 CDS CP003099.1 762033 762845 3 + 813 HMP-PP hydrolase (pyridoxal phosphatase) Cof, detected in genetic screen for thiamin metabolic genes (PMID:15292217) - none -
fig|6666666.229902.peg.808 CDS CP003099.1 763059 764138 3 + 1080 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch;
Threonine and Homoserine Biosynthesis
fig|6666666.229902.peg.809 CDS CP003099.1 764792 764211 -2 - 582 Late competence protein ComEA, DNA receptor - none -
fig|6666666.229902.peg.810 CDS CP003099.1 765057 767627 3 + 2571 ClpB protein Protein chaperones;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229902.peg.811 CDS CP003099.1 767756 767637 -2 - 120 hypothetical protein - none -
fig|6666666.229902.peg.812 CDS CP003099.1 768229 767729 -1 - 501 hypothetical protein - none -
fig|6666666.229902.peg.813 CDS CP003099.1 768412 769440 1 + 1029 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) - none -
fig|6666666.229902.peg.814 CDS CP003099.1 769440 769619 3 + 180 hypothetical protein - none -
fig|6666666.229902.peg.815 CDS CP003099.1 769698 770522 3 + 825 Diaminopimelate epimerase (EC 5.1.1.7) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229902.peg.816 CDS CP003099.1 770532 771422 3 + 891 Tyrosine recombinase XerC - none -
fig|6666666.229902.peg.817 CDS CP003099.1 771436 772149 1 + 714 Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5@1-phosphoribitylamino)uracil phosphatase Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants
fig|6666666.229902.peg.818 CDS CP003099.1 772675 772250 -1 - 426 Excinuclease ATPase subunit - none -
fig|6666666.229902.peg.819 CDS CP003099.1 772703 772963 2 + 261 hypothetical protein - none -
fig|6666666.229902.peg.820 CDS CP003099.1 773055 773798 3 + 744 3-oxoacyl-[ACP] synthase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229902.peg.821 CDS CP003099.1 773783 774571 2 + 789 FIG018329: 1-acyl-sn-glycerol-3-phosphate acyltransferase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229902.peg.822 CDS CP003099.1 774549 774812 3 + 264 Acyl carrier protein (ACP1) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229902.peg.823 CDS CP003099.1 774815 775066 2 + 252 Acyl carrier protein (ACP2) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229902.peg.824 CDS CP003099.1 775066 776733 1 + 1668 FIGfam138462: Acyl-CoA synthetase, AMP-(fatty) acid ligase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229902.peg.825 CDS CP003099.1 776758 777303 1 + 546 FIG017861: hypothetical protein Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229902.peg.826 CDS CP003099.1 777300 778661 3 + 1362 FIGfam138462: Acyl-CoA synthetase, AMP-(fatty) acid ligase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229902.peg.827 CDS CP003099.1 778661 779383 2 + 723 FIG143263: Glycosyl transferase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229902.peg.828 CDS CP003099.1 779380 780306 1 + 927 Lysophospholipid acyltransferase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229902.peg.829 CDS CP003099.1 780303 780749 3 + 447 FIG002571: 4-hydroxybenzoyl-CoA thioesterase domain protein Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229902.peg.830 CDS CP003099.1 780746 781330 2 + 585 FIG027190: Putative transmembrane protein Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229902.peg.831 CDS CP003099.1 781337 783610 2 + 2274 FIG021862: membrane protein, exporter Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229902.peg.832 CDS CP003099.1 783740 784219 2 + 480 FIG085779: Lipoprotein Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229902.peg.833 CDS CP003099.1 784228 785451 1 + 1224 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) FabV like Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229902.peg.834 CDS CP003099.1 785444 785887 2 + 444 3-hydroxydecanoyl-[ACP] dehydratase (EC 4.2.1.60) Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229902.peg.835 CDS CP003099.1 785937 786665 3 + 729 3-oxoacyl-[ACP] reductase (EC 1.1.1.100) Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229902.peg.836 CDS CP003099.1 786685 787929 1 + 1245 FIG138576: 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229902.peg.837 CDS CP003099.1 789795 788341 -3 - 1455 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) D-gluconate and ketogluconates metabolism;
Pentose phosphate pathway
fig|6666666.229902.peg.838 CDS CP003099.1 789816 789962 3 + 147 hypothetical protein - none -
fig|6666666.229902.peg.839 CDS CP003099.1 790811 790353 -2 - 459 Uncharacterized virulence-associated protein D - none -
fig|6666666.229902.peg.840 CDS CP003099.1 791145 790891 -3 - 255 Glutaredoxin-related protein Glutaredoxins
fig|6666666.229902.peg.841 CDS CP003099.1 791850 791158 -3 - 693 Aspartate racemase (EC 5.1.1.13) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229902.peg.842 CDS CP003099.1 792393 791965 -3 - 429 FIG00848466: hypothetical protein - none -
fig|6666666.229902.peg.843 CDS CP003099.1 793418 792720 -2 - 699 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type Entner-Doudoroff Pathway;
Pentose phosphate pathway
fig|6666666.229902.peg.844 CDS CP003099.1 795155 793671 -2 - 1485 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) Entner-Doudoroff Pathway;
Pentose phosphate pathway
fig|6666666.229902.peg.845 CDS CP003099.1 796046 795237 -2 - 810 3@1(2@1),5@1-bisphosphate nucleotidase (EC 3.1.3.7) - none -
fig|6666666.229902.peg.846 CDS CP003099.1 796512 796084 -3 - 429 hypothetical protein - none -
fig|6666666.229902.peg.847 CDS CP003099.1 798580 796574 -1 - 2007 oligopeptide transporter - none -
fig|6666666.229902.peg.848 CDS CP003099.1 798949 799575 1 + 627 membrane protein ykgB - none -
fig|6666666.229902.peg.849 CDS CP003099.1 799645 800481 1 + 837 Transcriptional regulator, AraC family - none -
fig|6666666.229902.peg.850 CDS CP003099.1 801119 800529 -2 - 591 ADP compounds hydrolase NudE (EC 3.6.1.-) Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229902.peg.851 CDS CP003099.1 801158 801817 2 + 660 FIG001957: putative hydrolase CBSS-584.1.peg.3382
fig|6666666.229902.peg.852 CDS CP003099.1 801830 802246 2 + 417 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) CBSS-584.1.peg.3382;
Cell division-ribosomal stress proteins cluster;
DNA replication cluster 1;
Heat shock dnaK gene cluster extended
fig|6666666.229902.peg.853 CDS CP003099.1 802314 803186 3 + 873 33 kDa chaperonin (Heat shock protein 33) (HSP33) CBSS-584.1.peg.3382
fig|6666666.229902.peg.854 CDS CP003099.1 803589 803867 3 + 279 Twin-arginine translocation protein TatA Cluster-based Subsystem Grouping Hypotheticals - perhaps Proteosome Related;
Twin-arginine translocation system
fig|6666666.229902.peg.855 CDS CP003099.1 803849 804478 2 + 630 Twin-arginine translocation protein TatB Twin-arginine translocation system
fig|6666666.229902.peg.856 CDS CP003099.1 804516 805280 3 + 765 Twin-arginine translocation protein TatC Cluster-based Subsystem Grouping Hypotheticals - perhaps Proteosome Related;
Twin-arginine translocation system
fig|6666666.229902.peg.857 CDS CP003099.1 805299 806321 3 + 1023 Porphobilinogen synthase (EC 4.2.1.24) Heme and Siroheme Biosynthesis
fig|6666666.229902.peg.858 CDS CP003099.1 808614 806533 -3 - 2082 Glycyl-tRNA synthetase beta chain (EC 6.1.1.14) Glycyl-tRNA synthetase;
Glycyl-tRNA synthetase containing cluster;
tRNA aminoacylation, Gly
fig|6666666.229902.peg.859 CDS CP003099.1 809400 808696 -3 - 705 hypothetical protein - none -
fig|6666666.229902.peg.860 CDS CP003099.1 809781 809491 -3 - 291 ISSo9, nucleotidyltransferase domain protein - none -
fig|6666666.229902.peg.861 CDS CP003099.1 810209 809949 -2 - 261 Glutaredoxin-related protein Glutaredoxins
fig|6666666.229902.peg.862 CDS CP003099.1 811164 810259 -3 - 906 Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14) Glycyl-tRNA synthetase;
Glycyl-tRNA synthetase containing cluster;
tRNA aminoacylation, Gly
fig|6666666.229902.peg.863 CDS CP003099.1 811517 811356 -2 - 162 Ferredoxin-type protein NapF (periplasmic nitrate reductase) - none -
fig|6666666.229902.peg.864 CDS CP003099.1 812145 811531 -3 - 615 Putative oxidoreductase component of anaerobic dehydrogenases; Functional role page for Chaperone protein TorD - none -
fig|6666666.229902.peg.865 CDS CP003099.1 813032 812193 -2 - 840 Anaerobic dimethyl sulfoxide reductase chain C (EC 1.8.5.3) - none -
fig|6666666.229902.peg.866 CDS CP003099.1 813651 813034 -3 - 618 Anaerobic dimethyl sulfoxide reductase chain B (EC 1.8.5.3) - none -
fig|6666666.229902.peg.867 CDS CP003099.1 816082 813662 -1 - 2421 Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-) Anaerobic respiratory reductases
fig|6666666.229902.peg.868 CDS CP003099.1 816357 816217 -3 - 141 hypothetical protein - none -
fig|6666666.229902.peg.869 CDS CP003099.1 817292 817143 -2 - 150 hypothetical protein - none -
fig|6666666.229902.peg.870 CDS CP003099.1 818585 817701 -2 - 885 cell filamentation-like protein - none -
fig|6666666.229902.peg.871 CDS CP003099.1 818739 818599 -3 - 141 cell filamentation-like protein - none -
fig|6666666.229902.peg.872 CDS CP003099.1 819009 818830 -3 - 180 hypothetical protein - none -
fig|6666666.229902.peg.873 CDS CP003099.1 819592 819338 -1 - 255 hypothetical protein - none -
fig|6666666.229902.peg.874 CDS CP003099.1 821607 820849 -3 - 759 Ferric siderophore transport system, periplasmic binding protein TonB Hemin transport system;
Ton and Tol transport systems
fig|6666666.229902.peg.875 CDS CP003099.1 822063 821617 -3 - 447 Biopolymer transport protein ExbD/TolR Ton and Tol transport systems
fig|6666666.229902.peg.876 CDS CP003099.1 822537 822067 -3 - 471 Ferric siderophore transport system, biopolymer transport protein ExbB Ton and Tol transport systems
fig|6666666.229902.peg.877 CDS CP003099.1 823974 822712 -3 - 1263 Magnesium and cobalt efflux protein CorC CBSS-56780.10.peg.1536;
Copper homeostasis: copper tolerance;
Glycyl-tRNA synthetase containing cluster;
Magnesium transport;
tRNA-methylthiotransferase containing cluster
fig|6666666.229902.peg.878 CDS CP003099.1 824639 824049 -2 - 591 FIG001154: CcsA-related protein - none -
fig|6666666.229902.peg.879 CDS CP003099.1 824845 824723 -1 - 123 FIG001154: CcsA-related protein - none -
fig|6666666.229902.peg.880 CDS CP003099.1 824999 826378 2 + 1380 Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1) Bacterial signal recognition particle (SRP);
Universal GTPases
fig|6666666.229902.peg.881 CDS CP003099.1 826664 826530 -2 - 135 hypothetical protein - none -
fig|6666666.229902.peg.882 CDS CP003099.1 827847 827017 -3 - 831 S-formylglutathione hydrolase (EC 3.1.2.12) Glutathione-dependent pathway of formaldehyde detoxification
fig|6666666.229902.peg.883 CDS CP003099.1 828986 827862 -2 - 1125 S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) Glutathione-dependent pathway of formaldehyde detoxification
fig|6666666.229902.peg.884 CDS CP003099.1 829124 829396 2 + 273 Transcriptional regulator, MerR family Cobalt-zinc-cadmium resistance
fig|6666666.229902.peg.885 CDS CP003099.1 829400 829531 2 + 132 Transcriptional regulator, MerR family Cobalt-zinc-cadmium resistance
fig|6666666.229902.peg.886 CDS CP003099.1 830298 829645 -3 - 654 Sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140) - none -
fig|6666666.229902.peg.887 CDS CP003099.1 830645 830385 -2 - 261 hypothetical protein - none -
fig|6666666.229902.peg.888 CDS CP003099.1 831981 830614 -3 - 1368 Adenylosuccinate lyase (EC 4.3.2.2) CBSS-354.1.peg.876;
Purine conversions
fig|6666666.229902.peg.889 CDS CP003099.1 832616 832005 -2 - 612 FIG002903: a protein of unknown function perhaps involved in purine metabolism CBSS-354.1.peg.876
fig|6666666.229902.peg.890 CDS CP003099.1 832729 833139 1 + 411 Copper metallochaperone, bacterial analog of Cox17 protein Biogenesis of cytochrome c oxidases
fig|6666666.229902.peg.891 CDS CP003099.1 833278 833814 1 + 537 Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR De Novo Pyrimidine Synthesis;
De Novo Pyrimidine Synthesis;
pyrimidine conversions
fig|6666666.229902.peg.892 CDS CP003099.1 833879 834811 2 + 933 Survival protein SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA) (EC 5.2.1.8) Lipopolysaccharide assembly;
Peptidyl-prolyl cis-trans isomerase;
Periplasmic Stress Response
fig|6666666.229902.peg.893 CDS CP003099.1 834889 835752 1 + 864 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase (EC 2.1.1.182) RNA methylation;
Ribosome biogenesis bacterial
fig|6666666.229902.peg.894 CDS CP003099.1 835768 836595 1 + 828 Bis(5@1-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) - none -
fig|6666666.229902.peg.895 CDS CP003099.1 836686 837105 1 + 420 nucleotidyltransferase substrate binding protein, HI0074 family - none -
fig|6666666.229902.peg.896 CDS CP003099.1 837089 837382 2 + 294 nucleotidyltransferase - none -
fig|6666666.229902.peg.897 CDS CP003099.1 837410 837967 2 + 558 FIG00696423: hypothetical protein - none -
fig|6666666.229902.peg.898 CDS CP003099.1 837922 838038 1 + 117 hypothetical protein - none -
fig|6666666.229902.peg.899 CDS CP003099.1 838010 838180 2 + 171 hypothetical protein - none -
fig|6666666.229902.peg.900 CDS CP003099.1 838158 840746 3 + 2589 Leucyl-tRNA synthetase (EC 6.1.1.4) CBSS-208964.1.peg.3988;
tRNA aminoacylation, Leu
fig|6666666.229902.peg.901 CDS CP003099.1 840899 840771 -2 - 129 hypothetical protein - none -
fig|6666666.229902.peg.902 CDS CP003099.1 840888 841391 3 + 504 LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B) CBSS-208964.1.peg.3988;
KDO2-Lipid A biosynthesis;
Lipopolysaccharide assembly
fig|6666666.229902.peg.903 CDS CP003099.1 841391 842425 2 + 1035 DNA polymerase III delta subunit (EC 2.7.7.7) CBSS-208964.1.peg.3988
fig|6666666.229902.peg.904 CDS CP003099.1 843321 842917 -3 - 405 Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-) Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229902.peg.905 CDS CP003099.1 846160 843398 -1 - 2763 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) - none -
fig|6666666.229902.peg.906 CDS CP003099.1 846487 846170 -1 - 318 hypothetical protein - none -
fig|6666666.229902.peg.907 CDS CP003099.1 846612 846484 -3 - 129 hypothetical protein - none -
fig|6666666.229902.peg.908 CDS CP003099.1 846579 846890 3 + 312 Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives DNA replication cluster 1
fig|6666666.229902.peg.909 CDS CP003099.1 846918 847421 3 + 504 Mercuric resistance operon regulatory protein - none -
fig|6666666.229902.peg.910 CDS CP003099.1 848304 847498 -3 - 807 Mobile element protein - none -
fig|6666666.229902.peg.911 CDS CP003099.1 848474 848301 -2 - 174 hypothetical protein - none -
fig|6666666.229902.peg.912 CDS CP003099.1 849102 848746 -3 - 357 Diacylglycerol kinase (EC 2.7.1.107) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Riboflavin synthesis cluster
fig|6666666.229902.peg.913 CDS CP003099.1 851357 849126 -2 - 2232 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I CBSS-176299.4.peg.1292;
Stringent Response, (p)ppGpp metabolism
fig|6666666.229902.peg.914 CDS CP003099.1 852683 851367 -2 - 1317 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) RNA methylation
fig|6666666.229902.peg.915 CDS CP003099.1 853371 852685 -3 - 687 DNA recombination and repair protein RecO CBSS-176299.4.peg.1292;
DNA repair, bacterial RecFOR pathway;
Glycyl-tRNA synthetase containing cluster
fig|6666666.229902.peg.916 CDS CP003099.1 854516 853668 -2 - 849 Translation elongation factor Ts CBSS-312309.3.peg.1965;
Ribosome recycling related cluster;
Translation elongation factors bacterial
fig|6666666.229902.peg.917 CDS CP003099.1 855393 854671 -3 - 723 SSU ribosomal protein S2p (SAe) CBSS-312309.3.peg.1965;
Ribosome recycling related cluster
fig|6666666.229902.peg.918 CDS CP003099.1 855857 855468 -2 - 390 Patatin-like phospholipase - none -
fig|6666666.229902.peg.919 CDS CP003099.1 856863 855976 -3 - 888 Folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress - none -
fig|6666666.229902.peg.920 CDS CP003099.1 857754 856891 -3 - 864 Protein YicC CBSS-323097.3.peg.2594
fig|6666666.229902.peg.921 CDS CP003099.1 857872 858588 1 + 717 Ribonuclease PH (EC 2.7.7.56) Heat shock dnaK gene cluster extended;
tRNA processing
fig|6666666.229902.peg.922 CDS CP003099.1 858598 859242 1 + 645 Orotate phosphoribosyltransferase (EC 2.4.2.10) De Novo Pyrimidine Synthesis
fig|6666666.229902.peg.923 CDS CP003099.1 859324 860199 1 + 876 DnaJ-like protein DjlA - none -
fig|6666666.229902.peg.924 CDS CP003099.1 860203 860427 1 + 225 tRNA-dihydrouridine synthase C (EC 1.-.-.-) Murein hydrolase regulation and cell death;
tRNA modification Bacteria
fig|6666666.229902.peg.925 CDS CP003099.1 860431 860865 1 + 435 tRNA-dihydrouridine synthase C (EC 1.-.-.-) Murein hydrolase regulation and cell death;
tRNA modification Bacteria
fig|6666666.229902.peg.926 CDS CP003099.1 860865 861170 3 + 306 tRNA-dihydrouridine synthase C (EC 1.-.-.-) Murein hydrolase regulation and cell death;
tRNA modification Bacteria
fig|6666666.229902.peg.927 CDS CP003099.1 862249 861191 -1 - 1059 Ferric iron ABC transporter, ATP-binding protein Iron acquisition in Streptococcus
fig|6666666.229902.peg.928 CDS CP003099.1 863785 862265 -1 - 1521 Ferric iron ABC transporter, permease protein Iron acquisition in Streptococcus
fig|6666666.229902.peg.929 CDS CP003099.1 864864 863866 -3 - 999 Ferric iron ABC transporter, iron-binding protein Iron acquisition in Streptococcus
fig|6666666.229902.peg.930 CDS CP003099.1 865424 865083 -2 - 342 FIG002060: uncharacterized protein YggL CBSS-83333.1.peg.2911
fig|6666666.229902.peg.931 CDS CP003099.1 866222 865455 -2 - 768 tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33) CBSS-83333.1.peg.2911;
RNA methylation;
tRNA modification Bacteria
fig|6666666.229902.peg.932 CDS CP003099.1 866388 867578 3 + 1191 A/G-specific adenine glycosylase (EC 3.2.2.-) DNA repair, bacterial
fig|6666666.229902.peg.933 CDS CP003099.1 867556 867834 1 + 279 FIG001341: Probable Fe(2+)-trafficking protein YggX Heat shock dnaK gene cluster extended
fig|6666666.229902.peg.934 CDS CP003099.1 867837 868916 3 + 1080 Membrane-bound lytic murein transglycosylase C precursor (EC 3.2.1.-) Murein Hydrolases
fig|6666666.229902.peg.935 CDS CP003099.1 870028 869435 -1 - 594 Hypothetical lipoprotein YajG precursor CBSS-339671.5.peg.589
fig|6666666.229902.peg.936 CDS CP003099.1 870132 870443 3 + 312 Cell division protein BolA Bacterial Cell Division;
CBSS-339671.5.peg.589
fig|6666666.229902.peg.937 CDS CP003099.1 870453 870569 3 + 117 hypothetical protein - none -
fig|6666666.229902.peg.938 CDS CP003099.1 870607 870774 1 + 168 hypothetical protein - none -
fig|6666666.229902.peg.939 CDS CP003099.1 870799 872139 1 + 1341 Na(+)-translocating NADH-quinone reductase subunit A (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229902.peg.940 CDS CP003099.1 872142 873377 3 + 1236 Na(+)-translocating NADH-quinone reductase subunit B (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229902.peg.941 CDS CP003099.1 873370 874155 1 + 786 Na(+)-translocating NADH-quinone reductase subunit C (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229902.peg.942 CDS CP003099.1 874155 874784 3 + 630 Na(+)-translocating NADH-quinone reductase subunit D (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229902.peg.943 CDS CP003099.1 874788 875384 3 + 597 Na(+)-translocating NADH-quinone reductase subunit E (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229902.peg.944 CDS CP003099.1 875396 876631 2 + 1236 Na(+)-translocating NADH-quinone reductase subunit F (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229902.peg.945 CDS CP003099.1 876636 876785 3 + 150 hypothetical protein - none -
fig|6666666.229902.peg.946 CDS CP003099.1 876782 877870 2 + 1089 Thiamin biosynthesis lipoprotein ApbE - none -
fig|6666666.229902.peg.947 CDS CP003099.1 877949 878206 2 + 258 Probable exported or periplasmic protein in ApbE locus Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229902.peg.948 CDS CP003099.1 878467 879618 1 + 1152 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) CBSS-354.1.peg.876;
RNA methylation;
Riboflavin, FMN and FAD metabolism in plants;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229902.peg.949 CDS CP003099.1 880071 880187 3 + 117 hypothetical protein - none -
fig|6666666.229902.peg.950 CDS CP003099.1 880256 881566 2 + 1311 Enolase (EC 4.2.1.11) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis;
Serine-glyoxylate cycle
fig|6666666.229902.peg.951 CDS CP003099.1 882081 881662 -3 - 420 Putative Holliday junction resolvase YggF Cluster containing Alanyl-tRNA synthetase;
Cluster containing Glutathione synthetase
fig|6666666.229902.peg.952 CDS CP003099.1 882638 882081 -2 - 558 UPF0301 protein YqgE Cluster containing Glutathione synthetase
fig|6666666.229902.peg.953 CDS CP003099.1 883290 882655 -3 - 636 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) Cluster containing Glutathione synthetase;
Heat shock dnaK gene cluster extended;
RNA methylation
fig|6666666.229902.peg.954 CDS CP003099.1 883388 883519 2 + 132 hypothetical protein - none -
fig|6666666.229902.peg.955 CDS CP003099.1 883697 883476 -2 - 222 Methionine repressor MetJ Methionine Biosynthesis
fig|6666666.229902.peg.956 CDS CP003099.1 884834 883947 -2 - 888 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) - none -
fig|6666666.229902.peg.957 CDS CP003099.1 886274 884910 -2 - 1365 Phosphomannomutase (EC 5.4.2.8) Mannose Metabolism
fig|6666666.229902.peg.958 CDS CP003099.1 886488 886306 -3 - 183 Carbon storage regulator Carbon Starvation;
Carbon storage regulator
fig|6666666.229902.peg.959 CDS CP003099.1 889235 886611 -2 - 2625 Alanyl-tRNA synthetase (EC 6.1.1.7) Cluster containing Alanyl-tRNA synthetase;
tRNA aminoacylation, Ala
fig|6666666.229902.peg.960 CDS CP003099.1 889692 889435 -3 - 258 Universal stress protein A Universal stress protein family
fig|6666666.229902.peg.961 CDS CP003099.1 889978 890835 1 + 858 Nucleoside triphosphate pyrophosphohydrolase MazG (EC 3.6.1.8) Nucleoside triphosphate pyrophosphohydrolase MazG
fig|6666666.229902.peg.962 CDS CP003099.1 891922 890933 -1 - 990 Cytosine deaminase (EC 3.5.4.1) CBSS-326442.4.peg.1852;
Creatine and Creatinine Degradation;
pyrimidine conversions
fig|6666666.229902.peg.963 CDS CP003099.1 893920 892181 -1 - 1740 FIG001881: hydrolase of alkaline phosphatase superfamily CBSS-211586.1.peg.1979
fig|6666666.229902.peg.964 CDS CP003099.1 894149 893925 -2 - 225 FIG002927: hypothetical protein CBSS-211586.1.peg.1979
fig|6666666.229902.peg.965 CDS CP003099.1 894276 895301 3 + 1026 Nucleoid-associated protein NdpA CBSS-211586.1.peg.1979
fig|6666666.229902.peg.966 CDS CP003099.1 895367 895780 2 + 414 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex Lipopolysaccharide assembly
fig|6666666.229902.peg.967 CDS CP003099.1 895822 896517 1 + 696 Copper-sensing two-component system response regulator CpxR Orphan regulatory proteins
fig|6666666.229902.peg.968 CDS CP003099.1 896562 897950 3 + 1389 Copper sensory histidine kinase CpxA Orphan regulatory proteins
fig|6666666.229902.peg.969 CDS CP003099.1 899214 898006 -3 - 1209 Sodium/glutamate symport protein - none -
fig|6666666.229902.peg.970 CDS CP003099.1 899814 899380 -3 - 435 D-tyrosyl-tRNA(Tyr) deacylase (EC 3.6.1.n1) - none -
fig|6666666.229902.peg.971 CDS CP003099.1 900641 899811 -2 - 831 Ribonuclease BN (EC 3.1.-.-) - none -
fig|6666666.229902.peg.972 CDS CP003099.1 901111 900638 -1 - 474 UPF0225 protein YchJ Broadly distributed proteins not in subsystems
fig|6666666.229902.peg.973 CDS CP003099.1 901782 901114 -3 - 669 Uncharacterized protein conserved in bacteria - none -
fig|6666666.229902.peg.974 CDS CP003099.1 901908 903407 3 + 1500 ATPase component BioM of energizing module of biotin ECF transporter Biotin biosynthesis;
Biotin synthesis cluster;
ECF class transporters
fig|6666666.229902.peg.975 CDS CP003099.1 903796 904560 1 + 765 putative tetracenomycin polyketide synthesis O-methyltransferase - none -
fig|6666666.229902.peg.976 CDS CP003099.1 905531 904638 -2 - 894 Transcriptional regulator, LysR family - none -
fig|6666666.229902.peg.977 CDS CP003099.1 905890 906735 1 + 846 oxidoreductase of aldo/keto reductase family, subgroup 1 - none -
fig|6666666.229902.peg.978 CDS CP003099.1 906799 907779 1 + 981 Aldo-keto reductase - none -
fig|6666666.229902.peg.979 CDS CP003099.1 908005 908304 1 + 300 Carboxylesterase type B - none -
fig|6666666.229902.peg.980 CDS CP003099.1 908258 909061 2 + 804 Carboxylesterase type B - none -
fig|6666666.229902.peg.981 CDS CP003099.1 909329 909661 2 + 333 Carboxylesterase type B - none -
fig|6666666.229902.peg.982 CDS CP003099.1 909797 910906 2 + 1110 Putative exported protein precursor - none -
fig|6666666.229902.peg.983 CDS CP003099.1 911935 911045 -1 - 891 Transcriptional regulator, LysR family - none -
fig|6666666.229902.peg.984 CDS CP003099.1 912035 913099 2 + 1065 FIG01220323: hypothetical protein - none -
fig|6666666.229902.peg.985 CDS CP003099.1 915087 913252 -3 - 1836 Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) Sialic Acid Metabolism;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229902.peg.986 CDS CP003099.1 915939 915142 -3 - 798 Transcriptional regulator of glmS gene, DeoR family - none -
fig|6666666.229902.peg.987 CDS CP003099.1 916214 916065 -2 - 150 DNA-binding protein HU-alpha DNA structural proteins, bacterial;
DNA uptake cluster
fig|6666666.229902.peg.988 CDS CP003099.1 917093 916503 -2 - 591 FIG01200173: hypothetical protein - none -
fig|6666666.229902.peg.989 CDS CP003099.1 918175 917111 -1 - 1065 Uroporphyrinogen III decarboxylase (EC 4.1.1.37) Heme and Siroheme Biosynthesis
fig|6666666.229902.peg.990 CDS CP003099.1 918972 918172 -3 - 801 NADH pyrophosphatase (EC 3.6.1.22) DNA uptake cluster;
Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229902.peg.991 CDS CP003099.1 919754 919110 -2 - 645 converved hypothetical protein - none -
fig|6666666.229902.peg.992 CDS CP003099.1 920012 921628 2 + 1617 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) CBSS-584.1.peg.3382;
Pyruvate metabolism I: anaplerotic reactions, PEP;
Serine-glyoxylate cycle
fig|6666666.229902.peg.993 CDS CP003099.1 923240 921693 -2 - 1548 Exopolyphosphatase (EC 3.6.1.11) Phosphate metabolism;
Polyphosphate
fig|6666666.229902.peg.994 CDS CP003099.1 927121 923243 -1 - 3879 Uncharacterized protein YtfN Cluster Ytf and putative sugar transporter;
Putative sugar ABC transporter (ytf cluster)
fig|6666666.229902.peg.995 CDS CP003099.1 929008 927149 -1 - 1860 Uncharacterized protein YtfM precursor Cluster Ytf and putative sugar transporter;
Putative sugar ABC transporter (ytf cluster)
fig|6666666.229902.peg.996 CDS CP003099.1 929704 929075 -1 - 630 Nitrate/nitrite response regulator protein - none -
fig|6666666.229902.peg.997 CDS CP003099.1 932215 929714 -1 - 2502 Adenylate cyclase (EC 4.6.1.1) cAMP signaling in bacteria
fig|6666666.229902.peg.998 CDS CP003099.1 932314 933297 1 + 984 Porphobilinogen deaminase (EC 2.5.1.61) Heme and Siroheme Biosynthesis
fig|6666666.229902.peg.999 CDS CP003099.1 933310 934056 1 + 747 Uroporphyrinogen-III synthase (EC 4.2.1.75) Heme and Siroheme Biosynthesis
fig|6666666.229902.peg.1000 CDS CP003099.1 934087 935472 1 + 1386 Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) Heme and Siroheme Biosynthesis
fig|6666666.229902.peg.1001 CDS CP003099.1 935485 936753 1 + 1269 Uncharacterized protein EC-HemY, likely associated with heme metabolism based on gene clustering with hemC, hemD in Proteobacteria (unrelated to HemY-type PPO in GramPositives) - none -
fig|6666666.229902.peg.1002 CDS CP003099.1 937531 936794 -1 - 738 Putative preQ0 transporter Queuosine-Archaeosine Biosynthesis
fig|6666666.229902.peg.1003 CDS CP003099.1 937837 938073 1 + 237 hypothetical protein - none -
fig|6666666.229902.peg.1004 CDS CP003099.1 938259 938846 3 + 588 DNA-directed RNA polymerase specialized sigma subunit, sigma24-like - none -
fig|6666666.229902.peg.1005 CDS CP003099.1 938861 939052 2 + 192 hypothetical protein - none -
fig|6666666.229902.peg.1006 CDS CP003099.1 939617 939135 -2 - 483 Transcription elongation factor GreB CBSS-243265.1.peg.198;
Transcription factors bacterial
fig|6666666.229902.peg.1007 CDS CP003099.1 939828 939962 3 + 135 Transcription accessory protein (S1 RNA-binding domain) CBSS-243265.1.peg.198;
Cell division-ribosomal stress proteins cluster;
Transcription factors bacterial
fig|6666666.229902.peg.1008 CDS CP003099.1 942430 940961 -1 - 1470 Sodium-dependent transporter - none -
fig|6666666.229902.peg.1009 CDS CP003099.1 942540 942752 3 + 213 hypothetical protein - none -
fig|6666666.229902.peg.1010 CDS CP003099.1 942767 943426 2 + 660 RuBisCO operon transcriptional regulator CO2 uptake, carboxysome
fig|6666666.229902.peg.1011 CDS CP003099.1 943643 945958 2 + 2316 Transcription accessory protein (S1 RNA-binding domain) CBSS-243265.1.peg.198;
Cell division-ribosomal stress proteins cluster;
Transcription factors bacterial
fig|6666666.229902.peg.1012 CDS CP003099.1 947463 946006 -3 - 1458 L-xylulose/3-keto-L-gulonate kinase (EC 2.7.1.-) L-ascorbate utilization (and related gene clusters)
fig|6666666.229902.peg.1013 CDS CP003099.1 948497 947469 -2 - 1029 Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229902.peg.1014 CDS CP003099.1 948391 948516 1 + 126 hypothetical protein - none -
fig|6666666.229902.peg.1015 CDS CP003099.1 950000 948513 -2 - 1488 Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229902.peg.1016 CDS CP003099.1 950163 951104 3 + 942 Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229902.peg.1017 CDS CP003099.1 952358 951174 -2 - 1185 Translation elongation factor Tu Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Translation elongation factors bacterial;
Universal GTPases
fig|6666666.229902.peg.1018 CDS CP003099.1 953091 954005 3 + 915 Pantothenate kinase (EC 2.7.1.33) Coenzyme A Biosynthesis
fig|6666666.229902.peg.1019 CDS CP003099.1 956479 954059 -1 - 2421 DNA gyrase subunit B (EC 5.99.1.3) Cell Division Subsystem including YidCD;
DNA gyrase subunits;
DNA replication cluster 1;
DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.229902.peg.1020 CDS CP003099.1 958465 956576 -1 - 1890 ATP-dependent DNA helicase RecQ DNA repair, bacterial RecFOR pathway
fig|6666666.229902.peg.1021 CDS CP003099.1 958776 958462 -3 - 315 Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly Biogenesis of cytochrome c oxidases
fig|6666666.229902.peg.1022 CDS CP003099.1 958899 959018 3 + 120 hypothetical protein - none -
fig|6666666.229902.peg.1023 CDS CP003099.1 959036 960286 2 + 1251 Diaminopimelate decarboxylase (EC 4.1.1.20) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229902.peg.1024 CDS CP003099.1 960944 960339 -2 - 606 probable integral membrane protein Cj0014c - none -
fig|6666666.229902.peg.1025 CDS CP003099.1 961143 961703 3 + 561 DNA-3-methyladenine glycosylase (EC 3.2.2.20) CBSS-326442.4.peg.1852;
DNA Repair Base Excision
fig|6666666.229902.peg.1026 CDS CP003099.1 961769 964111 2 + 2343 Outer membrane protein Imp, required for envelope biogenesis / Organic solvent tolerance protein precursor Lipopolysaccharide assembly
fig|6666666.229902.peg.1027 CDS CP003099.1 964665 964201 -3 - 465 Xanthine-guanine phosphoribosyltransferase (EC 2.4.2.22) Purine conversions
fig|6666666.229902.peg.1028 CDS CP003099.1 964780 966240 1 + 1461 Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3) Dipeptidases (EC 3.4.13.-);
Recycling of Peptidoglycan Amino Acids
fig|6666666.229902.peg.1029 CDS CP003099.1 967075 966320 -1 - 756 Short chain dehydrogenase - none -
fig|6666666.229902.peg.1030 CDS CP003099.1 967681 967169 -1 - 513 Molybdopterin-guanine dinucleotide biosynthesis protein MobB Molybdenum cofactor biosynthesis;
ar-431-EC Molybdopterin-guanine dinucleotide biosynthesis
fig|6666666.229902.peg.1031 CDS CP003099.1 968199 967762 -3 - 438 Sigma factor RpoE regulatory protein RseC Transcription initiation, bacterial sigma factors
fig|6666666.229902.peg.1032 CDS CP003099.1 969171 968209 -3 - 963 Sigma factor RpoE negative regulatory protein RseB precursor Periplasmic Stress Response;
Transcription initiation, bacterial sigma factors
fig|6666666.229902.peg.1033 CDS CP003099.1 969838 969254 -1 - 585 Sigma factor RpoE negative regulatory protein RseA Periplasmic Stress Response;
Transcription initiation, bacterial sigma factors
fig|6666666.229902.peg.1034 CDS CP003099.1 970452 969877 -3 - 576 RNA polymerase sigma factor RpoE Transcription initiation, bacterial sigma factors
fig|6666666.229902.peg.1035 CDS CP003099.1 970839 970585 -3 - 255 YgfY COG2938 - none -
fig|6666666.229902.peg.1036 CDS CP003099.1 971067 970879 -3 - 189 Ethidium bromide-methyl viologen resistance protein EmrE - none -
fig|6666666.229902.peg.1037 CDS CP003099.1 972867 971152 -3 - 1716 Prolyl-tRNA synthetase (EC 6.1.1.15), bacterial type tRNA aminoacylation, Pro
fig|6666666.229902.peg.1038 CDS CP003099.1 973011 974405 3 + 1395 L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1) Selenocysteine metabolism
fig|6666666.229902.peg.1039 CDS CP003099.1 974402 976261 2 + 1860 Selenocysteine-specific translation elongation factor Selenocysteine metabolism
fig|6666666.229902.peg.1040 CDS CP003099.1 976307 977209 2 + 903 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit - none -
fig|6666666.229902.peg.1041 CDS CP003099.1 977559 977248 -3 - 312 Membrane protein, MgtC/SapB family - none -
fig|6666666.229902.peg.1042 CDS CP003099.1 977975 977700 -2 - 276 tRNA pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses;
tRNA modification Archaea;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229902.peg.1043 CDS CP003099.1 978389 979891 2 + 1503 Sodium-dependent transporter - none -
fig|6666666.229902.peg.1044 CDS CP003099.1 980715 980831 3 + 117 hypothetical protein - none -
fig|6666666.229902.peg.1045 CDS CP003099.1 980875 981111 1 + 237 Mobile element protein - none -
fig|6666666.229902.peg.1046 CDS CP003099.1 983727 982087 -3 - 1641 Protein TadG, associated with Flp pilus assembly Widespread colonization island
fig|6666666.229902.peg.1047 CDS CP003099.1 984060 983743 -3 - 318 Flp pilus assembly surface protein TadF, ATP/GTP-binding motif Widespread colonization island
fig|6666666.229902.peg.1048 CDS CP003099.1 985742 984981 -2 - 762 Flp pilus assembly protein TadD, contains TPR repeat Widespread colonization island
fig|6666666.229902.peg.1049 CDS CP003099.1 986598 985732 -3 - 867 Type II/IV secretion system protein TadC, associated with Flp pilus assembly Widespread colonization island
fig|6666666.229902.peg.1050 CDS CP003099.1 987260 986595 -2 - 666 Flp pilus assembly protein TadB Widespread colonization island
fig|6666666.229902.peg.1051 CDS CP003099.1 988761 987481 -3 - 1281 Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily Widespread colonization island
fig|6666666.229902.peg.1052 CDS CP003099.1 989899 988775 -1 - 1125 Type II/IV secretion system ATPase TadZ/CpaE, associated with Flp pilus assembly Widespread colonization island
fig|6666666.229902.peg.1053 CDS CP003099.1 990418 989915 -1 - 504 Flp pilus assembly protein RcpB Widespread colonization island
fig|6666666.229902.peg.1054 CDS CP003099.1 991797 990415 -3 - 1383 Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly Widespread colonization island
fig|6666666.229902.peg.1055 CDS CP003099.1 992623 991799 -1 - 825 Flp pilus assembly protein RcpC/CpaB Widespread colonization island
fig|6666666.229902.peg.1056 CDS CP003099.1 993001 992675 -1 - 327 Type IV prepilin peptidase TadV/CpaA Widespread colonization island
fig|6666666.229902.peg.1057 CDS CP003099.1 993570 993421 -3 - 150 Flp pilus assembly protein, pilin Flp Widespread colonization island
fig|6666666.229902.peg.1058 CDS CP003099.1 994401 994865 3 + 465 Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly CBSS-56780.10.peg.1536;
Glycyl-tRNA synthetase containing cluster;
tRNA-methylthiotransferase containing cluster
fig|6666666.229902.peg.1059 CDS CP003099.1 995035 995736 1 + 702 unknown - none -
fig|6666666.229902.peg.1060 CDS CP003099.1 995740 997665 1 + 1926 Predicted P-loop ATPase fused to an acetyltransferase COG1444 tRNA modification Archaea;
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229902.peg.1061 CDS CP003099.1 997703 997876 2 + 174 hypothetical protein - none -
fig|6666666.229902.peg.1062 CDS CP003099.1 998268 1001789 3 + 3522 Transcription-repair coupling factor Cell division-ribosomal stress proteins cluster;
Transcription factors bacterial;
Transcription repair cluster
fig|6666666.229902.peg.1063 CDS CP003099.1 1001891 1002475 2 + 585 Phosphoheptose isomerase 1 (EC 5.3.1.-) Capsular heptose biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.229902.peg.1064 CDS CP003099.1 1002616 1003350 1 + 735 Arginine ABC transporter, ATP-binding protein ArtP Arginine and Ornithine Degradation
fig|6666666.229902.peg.1065 CDS CP003099.1 1003371 1004090 3 + 720 Arginine ABC transporter, periplasmic arginine-binding protein ArtI Arginine and Ornithine Degradation
fig|6666666.229902.peg.1066 CDS CP003099.1 1004095 1004757 1 + 663 Arginine ABC transporter, permease protein ArtQ Arginine and Ornithine Degradation
fig|6666666.229902.peg.1067 CDS CP003099.1 1004760 1005443 3 + 684 Arginine ABC transporter, permease protein ArtM Arginine and Ornithine Degradation
fig|6666666.229902.peg.1068 CDS CP003099.1 1005800 1005678 -2 - 123 hypothetical protein - none -
fig|6666666.229902.peg.1069 CDS CP003099.1 1005983 1007581 2 + 1599 Carbon starvation protein A Carbon Starvation
fig|6666666.229902.peg.1070 CDS CP003099.1 1007844 1008302 3 + 459 Cell division protein MraZ 16S rRNA modification within P site of ribosome;
Bacterial Cell Division;
Bacterial Cytoskeleton
fig|6666666.229902.peg.1071 CDS CP003099.1 1008412 1009380 1 + 969 rRNA small subunit methyltransferase H 16S rRNA modification within P site of ribosome;
Bacterial Cell Division
fig|6666666.229902.peg.1072 CDS CP003099.1 1009380 1009697 3 + 318 Cell division protein FtsL 16S rRNA modification within P site of ribosome;
Bacterial Cell Division;
Bacterial Cytoskeleton;
Stationary phase repair cluster
fig|6666666.229902.peg.1073 CDS CP003099.1 1009715 1011490 2 + 1776 Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129) 16S rRNA modification within P site of ribosome;
Bacterial Cell Division;
Bacterial Cytoskeleton;
CBSS-83331.1.peg.3039;
Peptidoglycan Biosynthesis
fig|6666666.229902.peg.1074 CDS CP003099.1 1011555 1013021 3 + 1467 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo
fig|6666666.229902.peg.1075 CDS CP003099.1 1013028 1014407 3 + 1380 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase (EC 6.3.2.10) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo
fig|6666666.229902.peg.1076 CDS CP003099.1 1014401 1015486 2 + 1086 Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC 2.7.8.13) Peptidoglycan Biosynthesis
fig|6666666.229902.peg.1077 CDS CP003099.1 1015513 1016817 1 + 1305 UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC 6.3.2.9) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo
fig|6666666.229902.peg.1078 CDS CP003099.1 1016832 1018022 3 + 1191 Cell division protein FtsW Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ
fig|6666666.229902.peg.1079 CDS CP003099.1 1018063 1019127 1 + 1065 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) Peptidoglycan Biosynthesis;
cell division core of larger cluster
fig|6666666.229902.peg.1080 CDS CP003099.1 1019198 1020628 2 + 1431 UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo;
cell division cluster containing FtsQ
fig|6666666.229902.peg.1081 CDS CP003099.1 1020641 1021570 2 + 930 D-alanine--D-alanine ligase (EC 6.3.2.4) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo;
cell division cluster containing FtsQ
fig|6666666.229902.peg.1082 CDS CP003099.1 1021567 1022334 1 + 768 Cell division protein FtsQ Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ;
cell division core of larger cluster
fig|6666666.229902.peg.1083 CDS CP003099.1 1022359 1023639 1 + 1281 Cell division protein FtsA Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ;
cell division core of larger cluster
fig|6666666.229902.peg.1084 CDS CP003099.1 1023723 1025006 3 + 1284 Cell division protein FtsZ (EC 3.4.24.-) Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ;
cell division core of larger cluster
fig|6666666.229902.peg.1085 CDS CP003099.1 1025044 1025961 1 + 918 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC 3.5.1.108) KDO2-Lipid A biosynthesis
fig|6666666.229902.peg.1086 CDS CP003099.1 1026159 1027319 3 + 1161 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) Chorismate Synthesis;
Chorismate Synthesis;
Phenylalanine and Tyrosine Branches from Chorismate;
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229902.peg.1087 CDS CP003099.1 1027453 1029333 1 + 1881 Chaperone protein HtpG Protein chaperones
fig|6666666.229902.peg.1088 CDS CP003099.1 1029399 1029743 3 + 345 FIG138056: a glutathione-dependent thiol reductase A Glutathione-dependent Thiol Reductase Associated with a Step in Lysine Biosynthesis;
CBSS-584.1.peg.1352
fig|6666666.229902.peg.1089 CDS CP003099.1 1029880 1031013 1 + 1134 N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18) A Glutathione-dependent Thiol Reductase Associated with a Step in Lysine Biosynthesis;
CBSS-584.1.peg.1352;
Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229902.peg.1090 CDS CP003099.1 1031015 1031695 2 + 681 FIG009095: D,D-carboxypeptidase family protein CBSS-584.1.peg.1352
fig|6666666.229902.peg.1091 CDS CP003099.1 1031940 1032563 3 + 624 ADP-ribose pyrophosphatase (EC 3.6.1.13) CBSS-216591.1.peg.168;
NAD and NADP cofactor biosynthesis global;
Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229902.peg.1092 CDS CP003099.1 1032614 1033438 2 + 825 3@1,5@1-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17) cAMP signaling in bacteria
fig|6666666.229902.peg.1093 CDS CP003099.1 1033538 1033717 2 + 180 hypothetical protein - none -
fig|6666666.229902.peg.1094 CDS CP003099.1 1034773 1033949 -1 - 825 FIG00711691: hypothetical protein - none -
fig|6666666.229902.peg.1095 CDS CP003099.1 1035210 1034746 -3 - 465 FIG00710847: hypothetical protein - none -
fig|6666666.229902.peg.1096 CDS CP003099.1 1035394 1035531 1 + 138 Queuosine Biosynthesis QueC ATPase Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229902.peg.1097 CDS CP003099.1 1035565 1036263 1 + 699 Queuosine Biosynthesis QueC ATPase Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229902.peg.1098 CDS CP003099.1 1036388 1037491 2 + 1104 ATPase component BioM of energizing module of biotin ECF transporter Biotin biosynthesis;
Biotin synthesis cluster;
ECF class transporters
fig|6666666.229902.peg.1099 CDS CP003099.1 1037467 1037601 1 + 135 ATPase component BioM of energizing module of biotin ECF transporter Biotin biosynthesis;
Biotin synthesis cluster;
ECF class transporters
fig|6666666.229902.peg.1100 CDS CP003099.1 1038708 1037680 -3 - 1029 Alcohol dehydrogenase (EC 1.1.1.1) 5-FCL-like protein;
Butanol Biosynthesis;
Fermentations: Mixed acid;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229902.peg.1101 CDS CP003099.1 1038979 1041126 1 + 2148 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) RNA methylation
fig|6666666.229902.peg.1102 CDS CP003099.1 1041567 1041223 -3 - 345 Fumarate reductase subunit D Succinate dehydrogenase
fig|6666666.229902.peg.1103 CDS CP003099.1 1041969 1041577 -3 - 393 Fumarate reductase subunit C Succinate dehydrogenase
fig|6666666.229902.peg.1104 CDS CP003099.1 1042751 1041981 -2 - 771 Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) 5-FCL-like protein;
Serine-glyoxylate cycle;
Succinate dehydrogenase;
TCA Cycle
fig|6666666.229902.peg.1105 CDS CP003099.1 1044564 1042756 -3 - 1809 Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) Serine-glyoxylate cycle;
Succinate dehydrogenase;
TCA Cycle
fig|6666666.229902.peg.1106 CDS CP003099.1 1044808 1044620 -1 - 189 hypothetical protein - none -
fig|6666666.229902.peg.1107 CDS CP003099.1 1044872 1045174 2 + 303 Translation elongation factor P Lys34:lysine transferase Translation elongation factor P lysylation
fig|6666666.229902.peg.1108 CDS CP003099.1 1045164 1045844 3 + 681 Translation elongation factor P Lys34:lysine transferase Translation elongation factor P lysylation
fig|6666666.229902.peg.1109 CDS CP003099.1 1046677 1045910 -1 - 768 Iron(III) dicitrate transport ATP-binding protein FecE (TC 3.A.1.14.1) - none -
fig|6666666.229902.peg.1110 CDS CP003099.1 1047660 1046677 -3 - 984 Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1) - none -
fig|6666666.229902.peg.1111 CDS CP003099.1 1048649 1047660 -2 - 990 Iron(III) dicitrate transport system permease protein FecC (TC 3.A.1.14.1) - none -
fig|6666666.229902.peg.1112 CDS CP003099.1 1049542 1048649 -1 - 894 Iron(III) dicitrate transport system, periplasmic iron-binding protein FecB (TC 3.A.1.14.1) - none -
fig|6666666.229902.peg.1113 CDS CP003099.1 1050683 1049613 -2 - 1071 Phosphoesterase (EC 3.1.-.-) - none -
fig|6666666.229902.peg.1114 CDS CP003099.1 1050754 1051197 1 + 444 FIG000557: hypothetical protein co-occurring with RecR DNA processing cluster
fig|6666666.229902.peg.1115 CDS CP003099.1 1051282 1051884 1 + 603 Recombination protein RecR DNA processing cluster;
DNA repair, bacterial RecFOR pathway
fig|6666666.229902.peg.1116 CDS CP003099.1 1051916 1053853 2 + 1938 DNA topoisomerase III (EC 5.99.1.2) DNA processing cluster;
DNA topoisomerases, Type I, ATP-independent
fig|6666666.229902.peg.1117 CDS CP003099.1 1053867 1053998 3 + 132 hypothetical protein - none -
fig|6666666.229902.peg.1118 CDS CP003099.1 1054026 1054364 3 + 339 Preprotein translocase subunit SecG (TC 3.A.5.1.1) CBSS-331978.3.peg.2915;
Murein hydrolase regulation and cell death
fig|6666666.229902.peg.1119 CDS CP003099.1 1054621 1054803 1 + 183 hypothetical protein - none -
fig|6666666.229902.peg.1120 CDS CP003099.1 1055833 1055060 -1 - 774 Monofunctional biosynthetic peptidoglycan transglycosylase (EC 2.4.2.-) Peptidoglycan Biosynthesis
fig|6666666.229902.peg.1121 CDS CP003099.1 1056119 1055811 -2 - 309 Transcriptional repressor protein TrpR Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate);
Tryptophan synthesis
fig|6666666.229902.peg.1122 CDS CP003099.1 1058368 1056152 -1 - 2217 Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) Murein Hydrolases
fig|6666666.229902.peg.1123 CDS CP003099.1 1059190 1058894 -1 - 297 YciL protein Broadly distributed proteins not in subsystems;
CBSS-211586.9.peg.2729
fig|6666666.229902.peg.1124 CDS CP003099.1 1059663 1059193 -3 - 471 Acyl-CoA thioesterase YciA, involved in membrane biogenesis CBSS-211586.9.peg.2729;
Intracellular septation in Enterobacteria
fig|6666666.229902.peg.1125 CDS CP003099.1 1060218 1059667 -3 - 552 Intracellular septation protein IspA CBSS-211586.9.peg.2729;
Intracellular septation in Enterobacteria
fig|6666666.229902.peg.1126 CDS CP003099.1 1060715 1060224 -2 - 492 Membrane protein involved in the export of O-antigen and teichoic acid - none -
fig|6666666.229902.peg.1127 CDS CP003099.1 1061165 1061019 -2 - 147 hypothetical protein - none -
fig|6666666.229902.peg.1128 CDS CP003099.1 1061251 1061898 1 + 648 Outer membrane protein W precursor - none -
fig|6666666.229902.peg.1129 CDS CP003099.1 1063592 1061916 -2 - 1677 DNA repair protein RecN DNA repair, bacterial
fig|6666666.229902.peg.1130 CDS CP003099.1 1064583 1063666 -3 - 918 NAD kinase (EC 2.7.1.23) NAD and NADP cofactor biosynthesis global
fig|6666666.229902.peg.1131 CDS CP003099.1 1064756 1064628 -2 - 129 hypothetical protein - none -
fig|6666666.229902.peg.1132 CDS CP003099.1 1064724 1065302 3 + 579 Heat shock protein GrpE GroEL GroES;
Heat shock dnaK gene cluster extended;
Protein chaperones
fig|6666666.229902.peg.1133 CDS CP003099.1 1067231 1065588 -2 - 1644 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229902.peg.1134 CDS CP003099.1 1068483 1067191 -3 - 1293 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229902.peg.1135 CDS CP003099.1 1070691 1068673 -3 - 2019 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) CBSS-354.1.peg.876;
RNA methylation;
Riboflavin, FMN and FAD metabolism in plants;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229902.peg.1136 CDS CP003099.1 1070861 1072081 2 + 1221 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41) Fatty Acid Biosynthesis FASII
fig|6666666.229902.peg.1137 CDS CP003099.1 1072196 1072062 -2 - 135 hypothetical protein - none -
fig|6666666.229902.peg.1138 CDS CP003099.1 1072222 1074069 1 + 1848 Aerobic respiration control sensor protein arcB (EC 2.7.3.-) - none -
fig|6666666.229902.peg.1139 CDS CP003099.1 1075153 1074143 -1 - 1011 Galactose/methyl galactoside ABC transport system, permease protein MglC (TC 3.A.1.2.3) Lactose and Galactose Uptake and Utilization
fig|6666666.229902.peg.1140 CDS CP003099.1 1076254 1075172 -1 - 1083 Galactose/methyl galactoside ABC transport system, ATP-binding protein MglA (EC 3.6.3.17) Lactose and Galactose Uptake and Utilization
fig|6666666.229902.peg.1141 CDS CP003099.1 1076709 1076362 -3 - 348 Galactose/methyl galactoside ABC transport system, ATP-binding protein MglA (EC 3.6.3.17) Lactose and Galactose Uptake and Utilization
fig|6666666.229902.peg.1142 CDS CP003099.1 1077752 1076784 -2 - 969 Galactose/methyl galactoside ABC transport system, D-galactose-binding periplasmic protein MglB (TC 3.A.1.2.3) Bacterial Chemotaxis;
Lactose and Galactose Uptake and Utilization
fig|6666666.229902.peg.1143 CDS CP003099.1 1079003 1077990 -2 - 1014 Galactose operon repressor, GalR-LacI family of transcriptional regulators Lactose and Galactose Uptake and Utilization
fig|6666666.229902.peg.1144 CDS CP003099.1 1079255 1080298 2 + 1044 Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10) Lactose and Galactose Uptake and Utilization
fig|6666666.229902.peg.1145 CDS CP003099.1 1080365 1081519 2 + 1155 Galactokinase (EC 2.7.1.6) Lactose and Galactose Uptake and Utilization
fig|6666666.229902.peg.1146 CDS CP003099.1 1081513 1082544 1 + 1032 Aldose 1-epimerase (EC 5.1.3.3) Lactose and Galactose Uptake and Utilization;
Maltose and Maltodextrin Utilization
fig|6666666.229902.peg.1147 CDS CP003099.1 1084309 1082855 -1 - 1455 Putative ATP /GTP binding protein - none -
fig|6666666.229902.peg.1148 CDS CP003099.1 1086021 1084588 -3 - 1434 2-oxoglutarate/malate translocator - none -
fig|6666666.229902.peg.1149 CDS CP003099.1 1087291 1086008 -1 - 1284 2-(5@1@1-triphosphoribosyl)-3@1-dephosphocoenzyme-A synthase (EC 2.7.8.25) Citrate Metabolism, Transport, and Regulation
fig|6666666.229902.peg.1150 CDS CP003099.1 1089115 1087613 -1 - 1503 Citrate lyase alpha chain (EC 4.1.3.6) Citrate Metabolism, Transport, and Regulation
fig|6666666.229902.peg.1151 CDS CP003099.1 1090005 1089130 -3 - 876 Citrate lyase beta chain (EC 4.1.3.6) Citrate Metabolism, Transport, and Regulation
fig|6666666.229902.peg.1152 CDS CP003099.1 1090289 1090002 -2 - 288 Citrate lyase gamma chain, acyl carrier protein (EC 4.1.3.6) Citrate Metabolism, Transport, and Regulation;
TCA Cycle
fig|6666666.229902.peg.1153 CDS CP003099.1 1091336 1090329 -2 - 1008 [Citrate [pro-3S]-lyase] ligase (EC 6.2.1.22) Citrate Metabolism, Transport, and Regulation
fig|6666666.229902.peg.1154 CDS CP003099.1 1091556 1091422 -3 - 135 hypothetical protein - none -
fig|6666666.229902.peg.1155 CDS CP003099.1 1091582 1092478 2 + 897 Magnesium and cobalt efflux protein CorC CBSS-56780.10.peg.1536;
Copper homeostasis: copper tolerance;
Glycyl-tRNA synthetase containing cluster;
Magnesium transport;
tRNA-methylthiotransferase containing cluster
fig|6666666.229902.peg.1156 CDS CP003099.1 1092870 1094414 3 + 1545 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE Copper homeostasis: copper tolerance;
Lipoprotein Biosynthesis;
tRNA-methylthiotransferase containing cluster;
tRNA-methylthiotransferase containing cluster
fig|6666666.229902.peg.1157 CDS CP003099.1 1094695 1094477 -1 - 219 Translation initiation factor 1 Translation initiation factors bacterial
fig|6666666.229902.peg.1158 CDS CP003099.1 1094750 1094872 2 + 123 hypothetical protein - none -
fig|6666666.229902.peg.1159 CDS CP003099.1 1094915 1096222 2 + 1308 Peptidase B (EC 3.4.11.23) Aminopeptidases (EC 3.4.11.-)
fig|6666666.229902.peg.1160 CDS CP003099.1 1096234 1096659 1 + 426 Nucleoside diphosphate kinase (EC 2.7.4.6) CBSS-498211.3.peg.1415;
Purine conversions;
pyrimidine conversions
fig|6666666.229902.peg.1161 CDS CP003099.1 1096795 1097940 1 + 1146 Beta-hexosaminidase (EC 3.2.1.52) Chitin and N-acetylglucosamine utilization
fig|6666666.229902.peg.1162 CDS CP003099.1 1099141 1098029 -1 - 1113 Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like Scaffold proteins for [4Fe-4S] cluster assembly (MRP family)
fig|6666666.229902.peg.1163 CDS CP003099.1 1099314 1101374 3 + 2061 Methionyl-tRNA synthetase (EC 6.1.1.10) Scaffold proteins for [4Fe-4S] cluster assembly (MRP family);
tRNA aminoacylation, Met
fig|6666666.229902.peg.1164 CDS CP003099.1 1101702 1101508 -3 - 195 Believed to be involved in assembly of Fe-S clusters tRNA modification Bacteria
fig|6666666.229902.peg.1165 CDS CP003099.1 1102043 1101702 -2 - 342 Ferredoxin, 2Fe-2S Alanine biosynthesis;
Soluble cytochromes and functionally related electron carriers;
tRNA modification Bacteria
fig|6666666.229902.peg.1166 CDS CP003099.1 1103914 1102055 -1 - 1860 Chaperone protein HscA Alanine biosynthesis;
Protein chaperones;
tRNA modification Bacteria
fig|6666666.229902.peg.1167 CDS CP003099.1 1104456 1103935 -3 - 522 Chaperone protein HscB Protein chaperones;
tRNA modification Bacteria
fig|6666666.229902.peg.1168 CDS CP003099.1 1104791 1104468 -2 - 324 Iron binding protein IscA for iron-sulfur cluster assembly Alanine biosynthesis;
tRNA modification Bacteria
fig|6666666.229902.peg.1169 CDS CP003099.1 1105306 1104923 -1 - 384 Iron-sulfur cluster assembly scaffold protein IscU Alanine biosynthesis;
tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229902.peg.1170 CDS CP003099.1 1106580 1105366 -3 - 1215 Cysteine desulfurase (EC 2.8.1.7), IscS subfamily Alanine biosynthesis;
Thiamin biosynthesis;
mnm5U34 biosynthesis bacteria;
tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229902.peg.1171 CDS CP003099.1 1107107 1106634 -2 - 474 Iron-sulfur cluster regulator IscR Alanine biosynthesis;
Rrf2 family transcriptional regulators
fig|6666666.229902.peg.1172 CDS CP003099.1 1107909 1107169 -3 - 741 tRNA:Cm32/Um32 methyltransferase RNA methylation;
tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229902.peg.1173 CDS CP003099.1 1108060 1108860 1 + 801 Inositol-1-monophosphatase (EC 3.1.3.25) - none -
fig|6666666.229902.peg.1174 CDS CP003099.1 1111023 1109044 -3 - 1980 unknown - none -
fig|6666666.229902.peg.1175 CDS CP003099.1 1112348 1111302 -2 - 1047 Fe(3+) ions import ATP-binding protein fbpC (EC 3.6.3.30) - none -
fig|6666666.229902.peg.1176 CDS CP003099.1 1114421 1112364 -2 - 2058 Ferric iron ABC transporter, permease protein Iron acquisition in Streptococcus
fig|6666666.229902.peg.1177 CDS CP003099.1 1115201 1114449 -2 - 753 Ferric iron ABC transporter, iron-binding protein Iron acquisition in Streptococcus
fig|6666666.229902.peg.1178 CDS CP003099.1 1116693 1115653 -3 - 1041 Ferric iron ABC transporter, iron-binding protein Iron acquisition in Streptococcus
fig|6666666.229902.peg.1179 CDS CP003099.1 1117002 1117652 3 + 651 Uridine kinase (EC 2.7.1.48) [C1] pyrimidine conversions
fig|6666666.229902.peg.1180 CDS CP003099.1 1117662 1118246 3 + 585 Deoxycytidine triphosphate deaminase (EC 3.5.4.13) pyrimidine conversions
fig|6666666.229902.peg.1181 CDS CP003099.1 1118247 1119449 3 + 1203 FIG00696476: hypothetical protein - none -
fig|6666666.229902.peg.1182 CDS CP003099.1 1119451 1120647 1 + 1197 Sugar efflux transporter SotB - none -
fig|6666666.229902.peg.1183 CDS CP003099.1 1122249 1120717 -3 - 1533 GTP-binding protein EngA CBSS-290633.1.peg.1906;
CBSS-498211.3.peg.1415;
Universal GTPases
fig|6666666.229902.peg.1184 CDS CP003099.1 1122537 1123520 3 + 984 DnaJ-class molecular chaperone CbpA Protein chaperones
fig|6666666.229902.peg.1185 CDS CP003099.1 1123543 1123833 1 + 291 hypothetical protein - none -
fig|6666666.229902.peg.1186 CDS CP003099.1 1125196 1123898 -1 - 1299 Adenylosuccinate synthetase (EC 6.3.4.4) Purine conversions
fig|6666666.229902.peg.1187 CDS CP003099.1 1126249 1125284 -1 - 966 tRNA (5-methoxyuridine) 34 synthase tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229902.peg.1188 CDS CP003099.1 1127783 1126263 -2 - 1521 Proline/sodium symporter PutP (TC 2.A.21.2.1) @ Propionate/sodium symporter - none -
fig|6666666.229902.peg.1189 CDS CP003099.1 1127922 1129397 3 + 1476 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) Bacterial Cell Division;
CBSS-354.1.peg.2917;
RNA processing and degradation, bacterial
fig|6666666.229902.peg.1190 CDS CP003099.1 1129514 1130161 2 + 648 Glutaredoxin 2 Glutaredoxins;
Glutathione: Redox cycle
fig|6666666.229902.peg.1191 CDS CP003099.1 1130177 1130875 2 + 699 NAD-dependent protein deacetylase of SIR2 family Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229902.peg.1192 CDS CP003099.1 1130948 1131322 2 + 375 Mobile element protein - none -
fig|6666666.229902.peg.1193 CDS CP003099.1 1131935 1131801 -2 - 135 hypothetical protein - none -
fig|6666666.229902.peg.1194 CDS CP003099.1 1132626 1131937 -3 - 690 Inner membrane protein forms channel for type IV secretion of T-DNA complex, VirB8 - none -
fig|6666666.229902.peg.1195 CDS CP003099.1 1133840 1132839 -2 - 1002 Integral inner membrane protein of type IV secretion complex (VirB6) - none -
fig|6666666.229902.peg.1196 CDS CP003099.1 1134076 1133852 -1 - 225 hypothetical protein - none -
fig|6666666.229902.peg.1197 CDS CP003099.1 1134424 1134098 -1 - 327 hypothetical protein - none -
fig|6666666.229902.peg.1198 CDS CP003099.1 1134873 1134544 -3 - 330 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes - none -
fig|6666666.229902.peg.1199 CDS CP003099.1 1135227 1135346 3 + 120 Haemophilus-specific protein, uncharacterized - none -
fig|6666666.229902.peg.1200 CDS CP003099.1 1135660 1135839 1 + 180 hypothetical protein - none -
fig|6666666.229902.peg.1201 CDS CP003099.1 1136410 1136664 1 + 255 hypothetical protein - none -
fig|6666666.229902.peg.1202 CDS CP003099.1 1136667 1137011 3 + 345 Programmed cell death toxin MazF - none -
fig|6666666.229902.peg.1203 CDS CP003099.1 1137095 1137361 2 + 267 Virulence plasmid protein - none -
fig|6666666.229902.peg.1204 CDS CP003099.1 1137577 1138245 1 + 669 Cytolethal distending toxin subunit A Cytolethal distending toxin of Campylobacter jejuni;
Cytolethal distending toxins
fig|6666666.229902.peg.1205 CDS CP003099.1 1138260 1139111 3 + 852 Cytolethal distending toxin subunit B Cytolethal distending toxin of Campylobacter jejuni;
Cytolethal distending toxins
fig|6666666.229902.peg.1206 CDS CP003099.1 1139122 1139682 1 + 561 Cytolethal distending toxin subunit C Cytolethal distending toxin of Campylobacter jejuni;
Cytolethal distending toxins
fig|6666666.229902.peg.1207 CDS CP003099.1 1141466 1141206 -2 - 261 FIG141751: hypothetical protein in PFGI-1-like cluster - none -
fig|6666666.229902.peg.1208 CDS CP003099.1 1142256 1141480 -3 - 777 Chromosome partitioning ATPase in PFGI-1-like cluster, ParA-like - none -
fig|6666666.229902.peg.1209 CDS CP003099.1 1143199 1142783 -1 - 417 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229902.peg.1210 CDS CP003099.1 1143339 1143208 -3 - 132 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229902.peg.1211 CDS CP003099.1 1143594 1144784 3 + 1191 Cystathionine beta-lyase (EC 4.4.1.8) Methionine Biosynthesis
fig|6666666.229902.peg.1212 CDS CP003099.1 1144998 1146050 3 + 1053 Outer membrane protein P2 precursor - none -
fig|6666666.229902.peg.1213 CDS CP003099.1 1146194 1146451 2 + 258 hypothetical protein - none -
fig|6666666.229902.peg.1214 CDS CP003099.1 1146451 1146798 1 + 348 Programmed cell death toxin ChpB - none -
fig|6666666.229902.peg.1215 CDS CP003099.1 1148001 1146874 -3 - 1128 Chaperone protein DnaJ GroEL GroES;
Heat shock dnaK gene cluster extended;
Protein chaperones
fig|6666666.229902.peg.1216 CDS CP003099.1 1149562 1148435 -1 - 1128 Chaperone protein DnaK GroEL GroES;
Heat shock dnaK gene cluster extended;
Protein chaperones
fig|6666666.229902.peg.1217 CDS CP003099.1 1150335 1149550 -3 - 786 Chaperone protein DnaK GroEL GroES;
Heat shock dnaK gene cluster extended;
Protein chaperones
fig|6666666.229902.peg.1218 CDS CP003099.1 1150621 1152054 1 + 1434 Putative GTP-binding protein YdgA - none -
fig|6666666.229902.peg.1219 CDS CP003099.1 1154147 1152414 -2 - 1734 Arginyl-tRNA synthetase (EC 6.1.1.19) tRNA aminoacylation, Arg
fig|6666666.229902.peg.1220 CDS CP003099.1 1154244 1154831 3 + 588 Protein yecM - none -
fig|6666666.229902.peg.1221 CDS CP003099.1 1154873 1155328 2 + 456 Outer membrane lipoprotein - none -
fig|6666666.229902.peg.1222 CDS CP003099.1 1155467 1156549 2 + 1083 Peptide chain release factor 1 A Gammaproteobacteria Cluster Relating to Translation;
CBSS-216600.3.peg.802;
Translation termination factors bacterial;
YrdC-YciO-Sua5 protein family
fig|6666666.229902.peg.1223 CDS CP003099.1 1156589 1157488 2 + 900 Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2 A Gammaproteobacteria Cluster Relating to Translation;
CBSS-216600.3.peg.802;
Translation termination factors bacterial;
YrdC-YciO-Sua5 protein family
fig|6666666.229902.peg.1224 CDS CP003099.1 1157498 1158352 2 + 855 2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase (EC 2.5.1.55) A Gammaproteobacteria Cluster Relating to Translation;
KDO2-Lipid A biosynthesis
fig|6666666.229902.peg.1225 CDS CP003099.1 1158532 1159041 1 + 510 probable lipoprotein NlpC - none -
fig|6666666.229902.peg.1226 CDS CP003099.1 1159689 1159438 -3 - 252 Protein YcgL CBSS-243277.1.peg.4359
fig|6666666.229902.peg.1227 CDS CP003099.1 1159773 1160435 3 + 663 Septum site-determining protein MinC Bacterial Cell Division;
Bacterial Cytoskeleton;
Septum site-determining cluster Min
fig|6666666.229902.peg.1228 CDS CP003099.1 1161003 1160548 -3 - 456 FIG00696317: hypothetical protein - none -
fig|6666666.229902.peg.1229 CDS CP003099.1 1161693 1161226 -3 - 468 Phosphohistidine phosphatase SixA - none -
fig|6666666.229902.peg.1230 CDS CP003099.1 1163043 1161706 -3 - 1338 Phosphoglucosamine mutase (EC 5.4.2.10) Sialic Acid Metabolism;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229902.peg.1231 CDS CP003099.1 1163899 1163072 -1 - 828 Dihydropteroate synthase (EC 2.5.1.15) Folate Biosynthesis;
Folate biosynthesis cluster
fig|6666666.229902.peg.1232 CDS CP003099.1 1165010 1164069 -2 - 942 DNA polymerase IV (EC 2.7.7.7) DNA repair, bacterial
fig|6666666.229902.peg.1233 CDS CP003099.1 1165678 1165034 -1 - 645 Mobile element protein - none -
fig|6666666.229902.peg.1234 CDS CP003099.1 1165914 1166180 3 + 267 hypothetical protein - none -
fig|6666666.229902.peg.1235 CDS CP003099.1 1166182 1166919 1 + 738 Zeta toxin - none -
fig|6666666.229902.peg.1236 CDS CP003099.1 1167702 1167956 3 + 255 Mobile element protein - none -
fig|6666666.229902.peg.1237 CDS CP003099.1 1169628 1168162 -3 - 1467 Inosine-5@1-monophosphate dehydrogenase (EC 1.1.1.205) Purine conversions;
Purine salvage cluster
fig|6666666.229902.peg.1238 CDS CP003099.1 1169770 1170702 1 + 933 Biotin operon repressor / Biotin-protein ligase (EC 6.3.4.15) Biotin biosynthesis;
Biotin biosynthesis;
Biotin synthesis cluster;
Biotin synthesis cluster
fig|6666666.229902.peg.1239 CDS CP003099.1 1170789 1170992 3 + 204 Osmotically inducible lipoprotein B precursor Osmotic stress cluster
fig|6666666.229902.peg.1241 CDS CP003099.1 1177846 1177028 -1 - 819 Peptide transport system ATP-binding protein SapF - none -
fig|6666666.229902.peg.1242 CDS CP003099.1 1178902 1177850 -1 - 1053 Peptide transport system ATP-binding protein SapD - none -
fig|6666666.229902.peg.1243 CDS CP003099.1 1179797 1178910 -2 - 888 Peptide transport system permease protein SapC - none -
fig|6666666.229902.peg.1244 CDS CP003099.1 1180671 1179787 -3 - 885 Peptide transport system permease protein SapB - none -
fig|6666666.229902.peg.1245 CDS CP003099.1 1182383 1180752 -2 - 1632 Peptide transport periplasmic protein sapA (TC 3.A.1.5.5) - none -
fig|6666666.229902.peg.1246 CDS CP003099.1 1182649 1184064 1 + 1416 Conserved protein YcjX with nucleoside triphosphate hydrolase domain A conserved operon linked to TyrR and possibly involved in virulence
fig|6666666.229902.peg.1247 CDS CP003099.1 1184078 1185157 2 + 1080 Membrane protein YcjF A conserved operon linked to TyrR and possibly involved in virulence
fig|6666666.229902.peg.1248 CDS CP003099.1 1185241 1186200 1 + 960 Transcriptional repressor protein TyrR Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate);
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229902.peg.1249 CDS CP003099.1 1186331 1186197 -2 - 135 hypothetical protein - none -
fig|6666666.229902.peg.1250 CDS CP003099.1 1186565 1186416 -2 - 150 GTP-binding protein HflX Hfl operon;
Universal GTPases
fig|6666666.229902.peg.1251 CDS CP003099.1 1186876 1186580 -1 - 297 RNA-binding protein Hfq Hfl operon;
Polyadenylation bacterial
fig|6666666.229902.peg.1252 CDS CP003099.1 1187940 1186996 -3 - 945 tRNA dimethylallyltransferase (EC 2.5.1.75) tRNA modification Bacteria;
tRNA processing
fig|6666666.229902.peg.1253 CDS CP003099.1 1189805 1187955 -2 - 1851 DNA mismatch repair protein MutL DNA repair, bacterial MutL-MutS system
fig|6666666.229902.peg.1254 CDS CP003099.1 1191292 1189805 -1 - 1488 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) Murein Hydrolases;
Recycling of Peptidoglycan Amino Acids
fig|6666666.229902.peg.1255 CDS CP003099.1 1191783 1191289 -3 - 495 TsaE protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA Scaffold proteins for [4Fe-4S] cluster assembly (MRP family);
YjeE;
YrdC-YciO-Sua5 protein family
fig|6666666.229902.peg.1256 CDS CP003099.1 1191758 1191886 2 + 129 hypothetical protein - none -
fig|6666666.229902.peg.1257 CDS CP003099.1 1193733 1191940 -3 - 1794 Mlr4739 protein - none -
fig|6666666.229902.peg.1258 CDS CP003099.1 1194816 1194625 -3 - 192 RfbJ protein - none -
fig|6666666.229902.peg.1259 CDS CP003099.1 1196554 1195046 -1 - 1509 conserved domain protein - none -
fig|6666666.229902.peg.1260 CDS CP003099.1 1197158 1196541 -2 - 618 Glycerate kinase (EC 2.7.1.31) D-galactarate, D-glucarate and D-glycerate catabolism;
D-galactarate, D-glucarate and D-glycerate catabolism - gjo;
Glycerate metabolism;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Glycine and Serine Utilization;
Serine-glyoxylate cycle
fig|6666666.229902.peg.1261 CDS CP003099.1 1197681 1197187 -3 - 495 Dca - none -
fig|6666666.229902.peg.1262 CDS CP003099.1 1198811 1197909 -2 - 903 Dca - none -
fig|6666666.229902.peg.1263 CDS CP003099.1 1199767 1199219 -1 - 549 3@1-to-5@1 oligoribonuclease (orn) RNA processing and degradation, bacterial
fig|6666666.229902.peg.1264 CDS CP003099.1 1199838 1200878 3 + 1041 Ribosome small subunit-stimulated GTPase EngC Universal GTPases
fig|6666666.229902.peg.1265 CDS CP003099.1 1201099 1201356 1 + 258 Phosphotransferase system, phosphocarrier protein HPr Fructose utilization;
Mannitol Utilization
fig|6666666.229902.peg.1266 CDS CP003099.1 1201470 1203197 3 + 1728 Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) Fructose utilization;
Mannitol Utilization
fig|6666666.229902.peg.1267 CDS CP003099.1 1203258 1203758 3 + 501 PTS system, glucose-specific IIA component - none -
fig|6666666.229902.peg.1268 CDS CP003099.1 1205923 1203884 -1 - 2040 Oligopeptidase A (EC 3.4.24.70) Protein degradation
fig|6666666.229902.peg.1269 CDS CP003099.1 1206065 1206430 2 + 366 FIG039061: hypothetical protein related to heme utilization - none -
fig|6666666.229902.peg.1270 CDS CP003099.1 1206486 1207337 3 + 852 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229902.peg.1271 CDS CP003099.1 1207466 1207326 -2 - 141 hypothetical protein - none -
fig|6666666.229902.peg.1272 CDS CP003099.1 1207465 1208025 1 + 561 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229902.peg.1273 CDS CP003099.1 1208887 1208300 -1 - 588 Aminodeoxychorismate lyase (EC 4.1.3.38) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Folate Biosynthesis;
Tryptophan synthesis
fig|6666666.229902.peg.1274 CDS CP003099.1 1209864 1208890 -3 - 975 Para-aminobenzoate synthase, aminase component (EC 2.6.1.85) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Folate Biosynthesis;
Tryptophan synthesis
fig|6666666.229902.peg.1275 CDS CP003099.1 1209966 1210532 3 + 567 Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Folate Biosynthesis;
Tryptophan synthesis
fig|6666666.229902.peg.1276 CDS CP003099.1 1210688 1211632 2 + 945 Hydroxypyruvate reductase (EC 1.1.1.81) Glycerate metabolism;
Glycolate, glyoxylate interconversions
fig|6666666.229902.peg.1277 CDS CP003099.1 1212175 1213359 1 + 1185 Lipoprotein releasing system transmembrane protein LolC Lipopolysaccharide assembly;
Lipoprotein sorting system
fig|6666666.229902.peg.1278 CDS CP003099.1 1213374 1214060 3 + 687 Lipoprotein releasing system ATP-binding protein LolD Lipopolysaccharide assembly;
Lipoprotein sorting system
fig|6666666.229902.peg.1279 CDS CP003099.1 1214060 1215310 2 + 1251 Lipoprotein releasing system transmembrane protein LolE Lipopolysaccharide assembly;
Lipoprotein sorting system
fig|6666666.229902.peg.1280 CDS CP003099.1 1215411 1216490 3 + 1080 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha (EC 2.5.1.54) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229902.peg.1281 CDS CP003099.1 1216621 1216499 -1 - 123 hypothetical protein - none -
fig|6666666.229902.peg.1282 CDS CP003099.1 1216636 1218042 1 + 1407 Replicative DNA helicase (EC 3.6.1.-) - none -
fig|6666666.229902.peg.1283 CDS CP003099.1 1218067 1219149 1 + 1083 Alanine racemase (EC 5.1.1.1) ## biosynthetic Alanine biosynthesis;
Pyruvate Alanine Serine Interconversions
fig|6666666.229902.peg.1284 CDS CP003099.1 1219165 1220814 1 + 1650 Glucose-6-phosphate isomerase (EC 5.3.1.9) Glycolysis and Gluconeogenesis
fig|6666666.229902.peg.1285 CDS CP003099.1 1220954 1221427 2 + 474 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster
fig|6666666.229902.peg.1286 CDS CP003099.1 1221434 1221859 2 + 426 Transcription termination protein NusB Riboflavin synthesis cluster;
Transcription factors bacterial
fig|6666666.229902.peg.1287 CDS CP003099.1 1221878 1222861 2 + 984 Thiamine-monophosphate kinase (EC 2.7.4.16) 5-FCL-like protein;
Riboflavin synthesis cluster;
Thiamin biosynthesis
fig|6666666.229902.peg.1288 CDS CP003099.1 1222871 1223362 2 + 492 Phosphatidylglycerophosphatase A (EC 3.1.3.27) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Riboflavin synthesis cluster
fig|6666666.229902.peg.1289 CDS CP003099.1 1223371 1223994 1 + 624 L-lysine permease - none -
fig|6666666.229902.peg.1290 CDS CP003099.1 1224016 1224828 1 + 813 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229902.peg.1291 CDS CP003099.1 1225243 1224995 -1 - 249 Ferredoxin Soluble cytochromes and functionally related electron carriers
fig|6666666.229902.peg.1292 CDS CP003099.1 1225580 1225311 -2 - 270 hypothetical protein - none -
fig|6666666.229902.peg.1293 CDS CP003099.1 1226732 1225602 -2 - 1131 Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) Ribonucleotide reduction
fig|6666666.229902.peg.1294 CDS CP003099.1 1229915 1227645 -2 - 2271 Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) Ribonucleotide reduction
fig|6666666.229902.peg.1295 CDS CP003099.1 1231690 1230218 -1 - 1473 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229902.peg.1296 CDS CP003099.1 1231828 1231950 1 + 123 hypothetical protein - none -
fig|6666666.229902.peg.1297 CDS CP003099.1 1231961 1232989 2 + 1029 Ferric iron ABC transporter, iron-binding protein Iron acquisition in Streptococcus
fig|6666666.229902.peg.1298 CDS CP003099.1 1233041 1235074 2 + 2034 Ferric iron ABC transporter, permease protein Iron acquisition in Streptococcus
fig|6666666.229902.peg.1299 CDS CP003099.1 1235058 1236098 3 + 1041 Sulfate and thiosulfate import ATP-binding protein CysA (EC 3.6.3.25) Cysteine Biosynthesis;
Uptake of selenate and selenite
fig|6666666.229902.peg.1300 CDS CP003099.1 1238208 1236157 -3 - 2052 Periplasmic alpha-amylase (EC 3.2.1.1) Maltose and Maltodextrin Utilization
fig|6666666.229902.peg.1301 CDS CP003099.1 1239193 1238303 -1 - 891 Maltose/maltodextrin ABC transporter, permease protein MalG Maltose and Maltodextrin Utilization
fig|6666666.229902.peg.1302 CDS CP003099.1 1240759 1239215 -1 - 1545 Maltose/maltodextrin ABC transporter, permease protein MalF Maltose and Maltodextrin Utilization
fig|6666666.229902.peg.1303 CDS CP003099.1 1240914 1240783 -3 - 132 hypothetical protein - none -
fig|6666666.229902.peg.1304 CDS CP003099.1 1242073 1240883 -1 - 1191 Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein MalE Alpha-Amylase locus in Streptocococcus;
Bacterial Chemotaxis;
Maltose and Maltodextrin Utilization
fig|6666666.229902.peg.1305 CDS CP003099.1 1242530 1243648 2 + 1119 Maltose/maltodextrin transport ATP-binding protein MalK (EC 3.6.3.19) Maltose and Maltodextrin Utilization
fig|6666666.229902.peg.1306 CDS CP003099.1 1243725 1245008 3 + 1284 Maltoporin (maltose/maltodextrin high-affinity receptor, phage lambda receptor protein) Maltose and Maltodextrin Utilization
fig|6666666.229902.peg.1307 CDS CP003099.1 1245094 1245993 1 + 900 Maltose operon periplasmic protein MalM Maltose and Maltodextrin Utilization
fig|6666666.229902.peg.1308 CDS CP003099.1 1246064 1246195 2 + 132 hypothetical protein - none -
fig|6666666.229902.peg.1309 CDS CP003099.1 1247102 1246371 -2 - 732 Molybdopterin biosynthesis protein MoeB Molybdenum cofactor biosynthesis
fig|6666666.229902.peg.1310 CDS CP003099.1 1248332 1247118 -2 - 1215 Molybdopterin biosynthesis protein MoeA Molybdenum cofactor biosynthesis
fig|6666666.229902.peg.1311 CDS CP003099.1 1248461 1249117 2 + 657 GTP cyclohydrolase I (EC 3.5.4.16) type 1 Folate Biosynthesis;
Folate biosynthesis cluster;
Molybdenum cofactor biosynthesis;
Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229902.peg.1312 CDS CP003099.1 1250655 1249213 -3 - 1443 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) Metallocarboxypeptidases (EC 3.4.17.-);
Murein Hydrolases;
Peptidoglycan Biosynthesis
fig|6666666.229902.peg.1313 CDS CP003099.1 1250816 1251292 2 + 477 Transcription elongation factor GreA Transcription factors bacterial
fig|6666666.229902.peg.1314 CDS CP003099.1 1251667 1251365 -1 - 303 FIG004454: RNA binding protein - none -
fig|6666666.229902.peg.1315 CDS CP003099.1 1251835 1252134 1 + 300 Phage-related protein - none -
fig|6666666.229902.peg.1316 CDS CP003099.1 1252131 1252427 3 + 297 FIG045511: hypothetical antitoxin (to FIG022160: hypothetical toxin) - none -
fig|6666666.229902.peg.1317 CDS CP003099.1 1253074 1252460 -1 - 615 Riboflavin synthase eubacterial/eukaryotic (EC 2.5.1.9) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster;
riboflavin to FAD
fig|6666666.229902.peg.1318 CDS CP003099.1 1253101 1254498 1 + 1398 Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps Multidrug Resistance Efflux Pumps;
Riboflavin, FMN and FAD metabolism in plants
fig|6666666.229902.peg.1319 CDS CP003099.1 1255281 1254802 -3 - 480 Cys-tRNA(Pro) deacylase YbaK tRNA aminoacylation, Pro
fig|6666666.229902.peg.1320 CDS CP003099.1 1255342 1256145 1 + 804 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch;
Threonine and Homoserine Biosynthesis
fig|6666666.229902.peg.1321 CDS CP003099.1 1256130 1256579 3 + 450 Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229902.peg.1322 CDS CP003099.1 1256548 1257351 1 + 804 Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229902.peg.1323 CDS CP003099.1 1257354 1257968 3 + 615 ABC transporter ATP-binding protein - none -
fig|6666666.229902.peg.1324 CDS CP003099.1 1257965 1258825 2 + 861 Molybdenum transport system protein ModD Molybdenum cofactor biosynthesis
fig|6666666.229902.peg.1325 CDS CP003099.1 1258894 1259040 1 + 147 hypothetical protein - none -
fig|6666666.229902.peg.1326 CDS CP003099.1 1259117 1260565 2 + 1449 TldD protein, part of TldE/TldD proteolytic complex CBSS-354.1.peg.2917;
Putative TldE-TldD proteolytic complex
fig|6666666.229902.peg.1327 CDS CP003099.1 1260616 1266387 1 + 5772 FIG00904191: hypothetical protein - none -
fig|6666666.229902.peg.1328 CDS CP003099.1 1266520 1267569 1 + 1050 Putative membrane protein YeiH - none -
fig|6666666.229902.peg.1329 CDS CP003099.1 1267737 1270046 3 + 2310 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) DNA uptake cluster;
Peptidoglycan Biosynthesis;
Type IV pilus
fig|6666666.229902.peg.1330 CDS CP003099.1 1270830 1270156 -3 - 675 3-keto-L-gulonate 6-phosphate decarboxylase L-ascorbate utilization (and related gene clusters)
fig|6666666.229902.peg.1331 CDS CP003099.1 1271368 1270907 -1 - 462 Ascorbate-specific PTS system, EIIA component (EC 2.7.1.-) L-ascorbate utilization (and related gene clusters)
fig|6666666.229902.peg.1332 CDS CP003099.1 1273195 1271423 -1 - 1773 Ascorbate-specific PTS system, EIIC component L-ascorbate utilization (and related gene clusters)
fig|6666666.229902.peg.1333 CDS CP003099.1 1273541 1274632 2 + 1092 Probable L-ascorbate-6-phosphate lactonase UlaG (EC 3.1.1.-) (L-ascorbate utilization protein G) L-ascorbate utilization (and related gene clusters)
fig|6666666.229902.peg.1334 CDS CP003099.1 1274723 1275472 2 + 750 Ascorbate utilization transcriptional regulator UlaR, HTH-type L-ascorbate utilization (and related gene clusters)
fig|6666666.229902.peg.1335 CDS CP003099.1 1275513 1276373 3 + 861 L-xylulose 5-phosphate 3-epimerase (EC 5.1.3.-) L-ascorbate utilization (and related gene clusters)
fig|6666666.229902.peg.1336 CDS CP003099.1 1276608 1277063 3 + 456 L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) L-ascorbate utilization (and related gene clusters)
fig|6666666.229902.peg.1337 CDS CP003099.1 1278360 1277146 -3 - 1215 Tyrosine-specific transport protein - none -
fig|6666666.229902.peg.1338 CDS CP003099.1 1278655 1278849 1 + 195 Beta-galactosidase (EC 3.2.1.23) Galactosylceramide and Sulfatide metabolism;
Lactose and Galactose Uptake and Utilization;
Lactose utilization
fig|6666666.229902.peg.1339 CDS CP003099.1 1279448 1279113 -2 - 336 Glutaredoxin 1 Glutaredoxins;
Glutathione: Redox cycle
fig|6666666.229902.peg.1340 CDS CP003099.1 1279503 1280237 3 + 735 Oxygen-insensitive NADPH nitroreductase (EC 1.-.-.-) - none -
fig|6666666.229902.peg.1341 CDS CP003099.1 1280256 1281161 3 + 906 Ribosomal protein S6 glutaminyl transferase Ribosome biogenesis bacterial
fig|6666666.229902.peg.1342 CDS CP003099.1 1281214 1281405 1 + 192 hypothetical protein - none -
fig|6666666.229902.peg.1343 CDS CP003099.1 1281687 1281457 -3 - 231 FIG026291: Hypothetical periplasmic protein - none -
fig|6666666.229902.peg.1344 CDS CP003099.1 1282063 1281677 -1 - 387 FIG026291: Hypothetical periplasmic protein - none -
fig|6666666.229902.peg.1345 CDS CP003099.1 1283561 1282167 -2 - 1395 Fumarate hydratase class II (EC 4.2.1.2) TCA Cycle
fig|6666666.229902.peg.1346 CDS CP003099.1 1283771 1284220 2 + 450 DNA polymerase III chi subunit (EC 2.7.7.7) CBSS-208964.1.peg.3826
fig|6666666.229902.peg.1347 CDS CP003099.1 1284259 1284387 1 + 129 RNA-binding domain protein - none -
fig|6666666.229902.peg.1348 CDS CP003099.1 1284415 1284552 1 + 138 RNA-binding domain protein - none -
fig|6666666.229902.peg.1349 CDS CP003099.1 1285281 1288127 3 + 2847 Valyl-tRNA synthetase (EC 6.1.1.9) CBSS-208964.1.peg.3826;
tRNA aminoacylation, Val
fig|6666666.229902.peg.1350 CDS CP003099.1 1288194 1289087 3 + 894 hypothetical protein - none -
fig|6666666.229902.peg.1351 CDS CP003099.1 1289206 1289084 -1 - 123 HipA protein Persister Cells
fig|6666666.229902.peg.1352 CDS CP003099.1 1289322 1289206 -3 - 117 HipA protein Persister Cells
fig|6666666.229902.peg.1353 CDS CP003099.1 1289654 1289316 -2 - 339 HipA protein Persister Cells
fig|6666666.229902.peg.1354 CDS CP003099.1 1289985 1289704 -3 - 282 HipB protein Persister Cells
fig|6666666.229902.peg.1355 CDS CP003099.1 1291643 1290129 -2 - 1515 Inner membrane component of tripartite multidrug resistance system Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria
fig|6666666.229902.peg.1356 CDS CP003099.1 1292642 1291656 -2 - 987 Membrane fusion component of tripartite multidrug resistance system Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria
fig|6666666.229902.peg.1357 CDS CP003099.1 1292757 1292894 3 + 138 hypothetical protein - none -
fig|6666666.229902.peg.1358 CDS CP003099.1 1293023 1293505 2 + 483 Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1) Oxidative stress;
Oxidative stress;
Oxidative stress
fig|6666666.229902.peg.1359 CDS CP003099.1 1295603 1293624 -2 - 1980 Exoribonuclease II (EC 3.1.13.1) RNA processing and degradation, bacterial
fig|6666666.229902.peg.1360 CDS CP003099.1 1296465 1295677 -3 - 789 Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9) Fatty Acid Biosynthesis FASII
fig|6666666.229902.peg.1361 CDS CP003099.1 1297413 1296556 -3 - 858 FIG137478: Hypothetical protein YbgI - none -
fig|6666666.229902.peg.1362 CDS CP003099.1 1298210 1297536 -2 - 675 Queuosine Biosynthesis QueE Radical SAM Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229902.peg.1363 CDS CP003099.1 1298596 1298171 -1 - 426 6-carboxytetrahydropterin synthase (EC 4.1.2.50) @ Queuosine biosynthesis QueD, PTPS-I Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229902.peg.1364 CDS CP003099.1 1300294 1298786 -1 - 1509 Lysyl-tRNA synthetase (class II) (EC 6.1.1.6) tRNA aminoacylation, Lys
fig|6666666.229902.peg.1365 CDS CP003099.1 1301253 1300351 -3 - 903 Peptide chain release factor 2; programmed frameshift-containing Programmed frameshift;
Programmed frameshift;
Translation termination factors bacterial
fig|6666666.229902.peg.1366 CDS CP003099.1 1301533 1301372 -1 - 162 hypothetical protein - none -
fig|6666666.229902.peg.1367 CDS CP003099.1 1301617 1302300 1 + 684 Thiol:disulfide interchange protein DsbC Periplasmic disulfide interchange
fig|6666666.229902.peg.1368 CDS CP003099.1 1302313 1304034 1 + 1722 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) DNA Repair Base Excision;
DNA repair, bacterial RecFOR pathway
fig|6666666.229902.peg.1369 CDS CP003099.1 1304067 1304714 3 + 648 Thiol-disulfide isomerase and thioredoxins - none -
fig|6666666.229902.peg.1370 CDS CP003099.1 1304731 1305423 1 + 693 5@1-methylthioadenosine nucleosidase (EC 3.2.2.16) / S-adenosylhomocysteine nucleosidase (EC 3.2.2.9) Adenosyl nucleosidases;
Adenosyl nucleosidases;
Methionine Biosynthesis;
Methionine Degradation;
Polyamine Metabolism
fig|6666666.229902.peg.1371 CDS CP003099.1 1305603 1306298 3 + 696 Additional periplasmic component NikK of nickel ECF transporter Transport of Nickel and Cobalt
fig|6666666.229902.peg.1372 CDS CP003099.1 1306305 1306808 3 + 504 Additional component NikL of nickel ECF transporter Transport of Nickel and Cobalt
fig|6666666.229902.peg.1373 CDS CP003099.1 1306808 1307461 2 + 654 Substrate-specific component NikM of nickel ECF transporter ECF class transporters;
Transport of Nickel and Cobalt
fig|6666666.229902.peg.1374 CDS CP003099.1 1307458 1308153 1 + 696 Transmembrane component NikQ of energizing module of nickel ECF transporter ECF class transporters;
Transport of Nickel and Cobalt
fig|6666666.229902.peg.1375 CDS CP003099.1 1308119 1308742 2 + 624 ATPase component NikO of energizing module of nickel ECF transporter ECF class transporters;
Transport of Nickel and Cobalt
fig|6666666.229902.peg.1376 CDS CP003099.1 1308821 1309630 2 + 810 [NiFe] hydrogenase nickel incorporation-associated protein HypB G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229902.peg.1377 CDS CP003099.1 1309657 1310769 1 + 1113 [NiFe] hydrogenase metallocenter assembly protein HypD G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229902.peg.1378 CDS CP003099.1 1310769 1311782 3 + 1014 [NiFe] hydrogenase metallocenter assembly protein HypE G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229902.peg.1379 CDS CP003099.1 1311804 1311956 3 + 153 hypothetical protein - none -
fig|6666666.229902.peg.1380 CDS CP003099.1 1314561 1313746 -3 - 816 Shikimate 5-dehydrogenase I gamma (EC 1.1.1.25) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229902.peg.1381 CDS CP003099.1 1315595 1314711 -2 - 885 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) 5-FCL-like protein;
Methionine Biosynthesis;
One-carbon metabolism by tetrahydropterines;
Serine-glyoxylate cycle
fig|6666666.229902.peg.1382 CDS CP003099.1 1316837 1315770 -2 - 1068 FIG000906: Predicted Permease CBSS-208964.1.peg.3826
fig|6666666.229902.peg.1383 CDS CP003099.1 1317960 1316842 -3 - 1119 FIG000988: Predicted permease CBSS-208964.1.peg.3826
fig|6666666.229902.peg.1384 CDS CP003099.1 1318097 1319587 2 + 1491 Cytosol aminopeptidase PepA (EC 3.4.11.1) Aminopeptidases (EC 3.4.11.-);
CBSS-208964.1.peg.3826;
Dehydrogenase complexes
fig|6666666.229902.peg.1385 CDS CP003099.1 1320793 1319732 -1 - 1062 Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229902.peg.1386 CDS CP003099.1 1321508 1320780 -2 - 729 Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229902.peg.1387 CDS CP003099.1 1322351 1321587 -2 - 765 Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229902.peg.1388 CDS CP003099.1 1322578 1323357 1 + 780 DNA-binding domain of ModE / Molybdate-binding domain of ModE Molybdenum cofactor biosynthesis;
Molybdenum cofactor biosynthesis
fig|6666666.229902.peg.1389 CDS CP003099.1 1323578 1324921 2 + 1344 Arsenic efflux pump protein Arsenic resistance
fig|6666666.229902.peg.1390 CDS CP003099.1 1325584 1324988 -1 - 597 Nucleotidase YfbR, HD superfamily Housecleaning nucleoside triphosphate pyrophosphatases
fig|6666666.229902.peg.1391 CDS CP003099.1 1326621 1325593 -3 - 1029 Outer membrane stress sensor protease DegS Periplasmic Stress Response;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229902.peg.1392 CDS CP003099.1 1327754 1326630 -2 - 1125 Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster;
Riboflavin synthesis cluster
fig|6666666.229902.peg.1393 CDS CP003099.1 1328206 1327754 -1 - 453 Ribonucleotide reductase transcriptional regulator NrdR Ribonucleotide reduction
fig|6666666.229902.peg.1394 CDS CP003099.1 1329384 1328323 -3 - 1062 LSU rRNA 2@1-O-methyl-C2498 methyltransferase RlmM RNA methylation
fig|6666666.229902.peg.1395 CDS CP003099.1 1330309 1329404 -1 - 906 Glycine cleavage system transcriptional activator GcvA LysR-family proteins in Escherichia coli;
Orphan regulatory proteins
fig|6666666.229902.peg.1396 CDS CP003099.1 1330771 1331790 1 + 1020 Branched-chain amino acid aminotransferase (EC 2.6.1.42) Alanine biosynthesis;
Pyruvate Alanine Serine Interconversions
fig|6666666.229902.peg.1397 CDS CP003099.1 1332159 1332899 3 + 741 FIG00698611: hypothetical protein - none -
fig|6666666.229902.peg.1398 CDS CP003099.1 1333990 1333055 -1 - 936 Malate dehydrogenase (EC 1.1.1.37) Serine-glyoxylate cycle;
TCA Cycle
fig|6666666.229902.peg.1399 CDS CP003099.1 1334243 1334710 2 + 468 Arginine pathway regulatory protein ArgR, repressor of arg regulon Arginine Deiminase Pathway;
Arginine and Ornithine Degradation
fig|6666666.229902.peg.1400 CDS CP003099.1 1334734 1335621 1 + 888 Cell division inhibitor CBSS-83333.1.peg.946;
Persister Cells
fig|6666666.229902.peg.1401 CDS CP003099.1 1335812 1336393 2 + 582 Electron transport complex protein RnfA Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229902.peg.1402 CDS CP003099.1 1336393 1336983 1 + 591 Electron transport complex protein RnfB Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229902.peg.1403 CDS CP003099.1 1336984 1338936 1 + 1953 Electron transport complex protein RnfC Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229902.peg.1404 CDS CP003099.1 1339005 1339154 3 + 150 Electron transport complex protein RnfD Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229902.peg.1405 CDS CP003099.1 1339148 1340026 2 + 879 Electron transport complex protein RnfD Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229902.peg.1406 CDS CP003099.1 1340033 1340653 2 + 621 Electron transport complex protein RnfG Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229902.peg.1407 CDS CP003099.1 1340646 1341431 3 + 786 Electron transport complex protein RnfE Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229902.peg.1408 CDS CP003099.1 1341579 1342214 3 + 636 Endonuclease III (EC 4.2.99.18) DNA Repair Base Excision
fig|6666666.229902.peg.1409 CDS CP003099.1 1342239 1343516 3 + 1278 sodium-dependent transporter - none -
fig|6666666.229902.peg.1410 CDS CP003099.1 1344785 1344000 -2 - 786 Zinc ABC transporter, inner membrane permease protein ZnuB - none -
fig|6666666.229902.peg.1411 CDS CP003099.1 1345570 1344797 -1 - 774 Zinc ABC transporter, ATP-binding protein ZnuC - none -
fig|6666666.229902.peg.1412 CDS CP003099.1 1345759 1347291 1 + 1533 Cell wall endopeptidase, family M23/M37 Glutaredoxins
fig|6666666.229902.peg.1413 CDS CP003099.1 1348157 1347399 -2 - 759 Iron(III) dicitrate transport ATP-binding protein FecE (TC 3.A.1.14.1) - none -
fig|6666666.229902.peg.1414 CDS CP003099.1 1349110 1348169 -1 - 942 Ferric vibriobactin, enterobactin transport system, permease protein VctG (TC 3.A.1.14.6) - none -
fig|6666666.229902.peg.1415 CDS CP003099.1 1350065 1349100 -2 - 966 Ferric anguibactin transport system permease protein fatD - none -
fig|6666666.229902.peg.1416 CDS CP003099.1 1351024 1350125 -1 - 900 Iron compound ABC uptake transporter substrate-binding protein PiuA - none -
fig|6666666.229902.peg.1417 CDS CP003099.1 1351279 1351097 -1 - 183 hypothetical protein - none -
fig|6666666.229902.peg.1418 CDS CP003099.1 1351256 1352209 2 + 954 2@1,3@1-cyclic-nucleotide 2@1-phosphodiesterase (EC 3.1.4.16) Purine conversions;
pyrimidine conversions
fig|6666666.229902.peg.1419 CDS CP003099.1 1352213 1353229 2 + 1017 2@1,3@1-cyclic-nucleotide 2@1-phosphodiesterase (EC 3.1.4.16) Purine conversions;
pyrimidine conversions
fig|6666666.229902.peg.1420 CDS CP003099.1 1354220 1353303 -2 - 918 formate dehydrogenase formation protein FdhE Formate hydrogenase
fig|6666666.229902.peg.1421 CDS CP003099.1 1354478 1354344 -2 - 135 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229902.peg.1422 CDS CP003099.1 1354603 1355019 1 + 417 Protein ygiW precursor - none -
fig|6666666.229902.peg.1423 CDS CP003099.1 1355153 1355485 2 + 333 Phage FAD/FMN-containing dehydrogenase - none -
fig|6666666.229902.peg.1424 CDS CP003099.1 1355498 1355743 2 + 246 hypothetical protein - none -
fig|6666666.229902.peg.1425 CDS CP003099.1 1355821 1355952 1 + 132 hypothetical protein - none -
fig|6666666.229902.peg.1426 CDS CP003099.1 1355952 1358732 3 + 2781 FIG00696772: hypothetical protein - none -
fig|6666666.229902.peg.1427 CDS CP003099.1 1358907 1359755 3 + 849 FIG00697497: hypothetical protein - none -
fig|6666666.229902.peg.1428 CDS CP003099.1 1360240 1360359 1 + 120 Two-component system response regulator QseB Orphan regulatory proteins
fig|6666666.229902.peg.1429 CDS CP003099.1 1360346 1361722 2 + 1377 Sensory histidine kinase QseC Orphan regulatory proteins
fig|6666666.229902.peg.1430 CDS CP003099.1 1363576 1361807 -1 - 1770 Gamma-glutamyltranspeptidase (EC 2.3.2.2) Glutathione: Biosynthesis and gamma-glutamyl cycle
fig|6666666.229902.peg.1431 CDS CP003099.1 1364054 1363809 -2 - 246 FIG00696862: hypothetical protein - none -
fig|6666666.229902.peg.1432 CDS CP003099.1 1365581 1364244 -2 - 1338 Argininosuccinate synthase (EC 6.3.4.5) - none -
fig|6666666.229902.peg.1433 CDS CP003099.1 1366503 1365676 -3 - 828 Nucleoside-diphosphate-sugar epimerases - none -
fig|6666666.229902.peg.1434 CDS CP003099.1 1366860 1368443 3 + 1584 Peptide chain release factor 3 Translation termination factors bacterial
fig|6666666.229902.peg.1435 CDS CP003099.1 1368631 1368981 1 + 351 YPPCP.09C homologue - none -
fig|6666666.229902.peg.1436 CDS CP003099.1 1368978 1369277 3 + 300 Putative transcriptional regulator - none -
fig|6666666.229902.peg.1437 CDS CP003099.1 1372246 1369313 -1 - 2934 Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42) Ammonia assimilation;
CBSS-316057.3.peg.3521
fig|6666666.229902.peg.1438 CDS CP003099.1 1372668 1374368 3 + 1701 CRISPR-associated protein Cas3@1@1 CRISPRs
fig|6666666.229902.peg.1439 CDS CP003099.1 1374331 1374786 1 + 456 CRISPR-associated protein, Csd2/Csh2 family - none -
fig|6666666.229902.peg.1440 CDS CP003099.1 1375030 1377450 1 + 2421 CRISPR-associated RecB family exonuclease Cas4 / CRISPR-associated protein Cas1 CRISPRs
fig|6666666.229902.peg.1441 CDS CP003099.1 1377573 1378517 3 + 945 CRISPR-associated protein Cas1 CRISPRs
fig|6666666.229902.peg.1442 CDS CP003099.1 1378521 1378814 3 + 294 CRISPR-associated protein Cas2 CRISPRs
fig|6666666.229902.peg.1443 CDS CP003099.1 1379645 1379869 2 + 225 Phosphomethylpyrimidine kinase (EC 2.7.4.7) 5-FCL-like protein;
Thiamin biosynthesis
fig|6666666.229902.peg.1444 CDS CP003099.1 1380067 1381071 1 + 1005 Thiamin ABC transporter, substrate-binding component Thiamin biosynthesis
fig|6666666.229902.peg.1445 CDS CP003099.1 1381080 1382708 3 + 1629 Thiamin ABC transporter, transmembrane component Thiamin biosynthesis
fig|6666666.229902.peg.1446 CDS CP003099.1 1382692 1383339 1 + 648 Thiamin ABC transporter, ATPase component / Thiamine transport ATP-binding protein thiQ Thiamin biosynthesis
fig|6666666.229902.peg.1447 CDS CP003099.1 1383384 1384388 3 + 1005 Biotin synthase (EC 2.8.1.6) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229902.peg.1448 CDS CP003099.1 1385868 1384486 -3 - 1383 Outer membrane stress sensor protease DegQ, serine protease Periplasmic Stress Response;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229902.peg.1449 CDS CP003099.1 1385931 1386101 3 + 171 hypothetical protein - none -
fig|6666666.229902.peg.1450 CDS CP003099.1 1386469 1386059 -1 - 411 probable membrane protein YPO3565 - none -
fig|6666666.229902.peg.1451 CDS CP003099.1 1387014 1386640 -3 - 375 FIG00696060: hypothetical protein - none -
fig|6666666.229902.peg.1452 CDS CP003099.1 1388403 1387021 -3 - 1383 FIG00696060: hypothetical protein - none -
fig|6666666.229902.peg.1453 CDS CP003099.1 1389699 1388494 -3 - 1206 Mannose-6-phosphate isomerase (EC 5.3.1.8) Mannose Metabolism
fig|6666666.229902.peg.1454 CDS CP003099.1 1389875 1390213 2 + 339 FIG00904093: hypothetical protein - none -
fig|6666666.229902.peg.1455 CDS CP003099.1 1390401 1391894 3 + 1494 PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69) Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism;
Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229902.peg.1456 CDS CP003099.1 1392650 1391952 -2 - 699 FIG005121: SAM-dependent methyltransferase (EC 2.1.1.-) CBSS-228410.1.peg.134;
CBSS-342610.3.peg.1536;
Glutathione: Non-redox reactions
fig|6666666.229902.peg.1457 CDS CP003099.1 1392671 1393372 2 + 702 Hydroxyacylglutathione hydrolase (EC 3.1.2.6) CBSS-228410.1.peg.134;
CBSS-342610.3.peg.1536;
Glutathione: Non-redox reactions;
Methylglyoxal Metabolism
fig|6666666.229902.peg.1458 CDS CP003099.1 1393557 1394861 3 + 1305 Glutamyl-tRNA reductase (EC 1.2.1.70) A Gammaproteobacteria Cluster Relating to Translation;
Heme and Siroheme Biosynthesis
fig|6666666.229902.peg.1459 CDS CP003099.1 1394968 1396146 1 + 1179 N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family Chitin and N-acetylglucosamine utilization
fig|6666666.229902.peg.1460 CDS CP003099.1 1397527 1396883 -1 - 645 Adenylate kinase (EC 2.7.4.3) Purine conversions
fig|6666666.229902.peg.1461 CDS CP003099.1 1398841 1397660 -1 - 1182 AmpG permease Recycling of Peptidoglycan Amino Acids
fig|6666666.229902.peg.1462 CDS CP003099.1 1399297 1398956 -1 - 342 [NiFe] hydrogenase nickel incorporation protein HybF NiFe hydrogenase maturation
fig|6666666.229902.peg.1463 CDS CP003099.1 1400319 1399303 -3 - 1017 UDP-glucose 4-epimerase (EC 5.1.3.2) Lactose and Galactose Uptake and Utilization;
Rhamnose containing glycans
fig|6666666.229902.peg.1464 CDS CP003099.1 1400513 1400899 2 + 387 Integral membrane protein - none -
fig|6666666.229902.peg.1465 CDS CP003099.1 1400899 1401051 1 + 153 hypothetical protein - none -
fig|6666666.229902.peg.1466 CDS CP003099.1 1401024 1402355 3 + 1332 Guanine-hypoxanthine permease Purine Utilization
fig|6666666.229902.peg.1467 CDS CP003099.1 1403729 1402383 -2 - 1347 tRNA(Ile)-lysidine synthetase (EC 6.3.4.19) Cell division-ribosomal stress proteins cluster;
Folate biosynthesis cluster;
tRNA modification Bacteria;
tRNA processing;
tRNAmodification position 34
fig|6666666.229902.peg.1468 CDS CP003099.1 1404618 1403761 -3 - 858 Pyridoxal kinase (EC 2.7.1.35) Pyridoxin (Vitamin B6) Biosynthesis
fig|6666666.229902.peg.1469 CDS CP003099.1 1405634 1404681 -2 - 954 Acetyl-coenzyme A carboxyl transferase alpha chain (EC 6.4.1.2) Fatty Acid Biosynthesis FASII
fig|6666666.229902.peg.1470 CDS CP003099.1 1407415 1408365 1 + 951 hypothetical protein - none -
fig|6666666.229902.peg.1471 CDS CP003099.1 1409046 1408870 -3 - 177 hypothetical protein - none -
fig|6666666.229902.peg.1472 CDS CP003099.1 1409190 1409065 -3 - 126 hypothetical protein - none -
fig|6666666.229902.peg.1473 CDS CP003099.1 1409444 1409247 -2 - 198 Phage protein - none -
fig|6666666.229902.peg.1474 CDS CP003099.1 1410186 1409530 -3 - 657 Phage Rha protein - none -
fig|6666666.229902.peg.1475 CDS CP003099.1 1410854 1410630 -2 - 225 hypothetical protein - none -
fig|6666666.229902.peg.1476 CDS CP003099.1 1411275 1410919 -3 - 357 hypothetical protein - none -
fig|6666666.229902.peg.1477 CDS CP003099.1 1411881 1412324 3 + 444 Orf33 - none -
fig|6666666.229902.peg.1478 CDS CP003099.1 1412593 1412889 1 + 297 Phage protein - none -
fig|6666666.229902.peg.1479 CDS CP003099.1 1412997 1413194 3 + 198 Phage protein - none -
fig|6666666.229902.peg.1480 CDS CP003099.1 1413341 1413466 2 + 126 hypothetical protein - none -
fig|6666666.229902.peg.1481 CDS CP003099.1 1413536 1413961 2 + 426 FIG00643583: hypothetical protein - none -
fig|6666666.229902.peg.1482 CDS CP003099.1 1413958 1414317 1 + 360 phage-related protein - none -
fig|6666666.229902.peg.1483 CDS CP003099.1 1414762 1414343 -1 - 420 hypothetical protein - none -
fig|6666666.229902.peg.1484 CDS CP003099.1 1414996 1414814 -1 - 183 hypothetical protein - none -
fig|6666666.229902.peg.1485 CDS CP003099.1 1415252 1415383 2 + 132 hypothetical protein - none -
fig|6666666.229902.peg.1486 CDS CP003099.1 1415498 1416664 2 + 1167 Phage tail fibers Phage tail fiber proteins
fig|6666666.229902.peg.1487 CDS CP003099.1 1416664 1417275 1 + 612 Phage tail fibers Phage tail fiber proteins
fig|6666666.229902.peg.1488 CDS CP003099.1 1418261 1417428 -2 - 834 Integrase - none -
fig|6666666.229902.peg.1489 CDS CP003099.1 1420011 1418452 -3 - 1560 GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2) Purine conversions
fig|6666666.229902.peg.1490 CDS CP003099.1 1420309 1420043 -1 - 267 YafQ toxin protein Toxin-antitoxin replicon stabilization systems
fig|6666666.229902.peg.1491 CDS CP003099.1 1420593 1420321 -3 - 273 DNA-damage-inducible protein J DNA repair, bacterial;
Toxin-antitoxin replicon stabilization systems
fig|6666666.229902.peg.1492 CDS CP003099.1 1420818 1420633 -3 - 186 hypothetical protein - none -
fig|6666666.229902.peg.1493 CDS CP003099.1 1422200 1420848 -2 - 1353 C4-dicarboxylate transporter DcuC (TC 2.A.61.1.1) Citrate Metabolism, Transport, and Regulation
fig|6666666.229902.peg.1494 CDS CP003099.1 1422639 1423094 3 + 456 FIG000325: clustered with transcription termination protein NusA NusA-TFII Cluster;
Transcription factors bacterial
fig|6666666.229902.peg.1495 CDS CP003099.1 1423118 1424614 2 + 1497 Transcription termination protein NusA NusA-TFII Cluster;
Transcription factors bacterial
fig|6666666.229902.peg.1496 CDS CP003099.1 1424630 1427122 2 + 2493 Translation initiation factor 2 CBSS-138119.3.peg.2719;
NusA-TFII Cluster;
Translation initiation factors bacterial;
Universal GTPases
fig|6666666.229902.peg.1497 CDS CP003099.1 1427238 1427789 3 + 552 Type III restriction-modification system methylation subunit (EC 2.1.1.72) Restriction-Modification System
fig|6666666.229902.peg.1498 CDS CP003099.1 1427786 1428862 2 + 1077 Type III restriction-modification system methylation subunit (EC 2.1.1.72) Restriction-Modification System
fig|6666666.229902.peg.1499 CDS CP003099.1 1429017 1430165 3 + 1149 Type III restriction-modification system methylation subunit (EC 2.1.1.72) Restriction-Modification System
fig|6666666.229902.peg.1500 CDS CP003099.1 1430267 1432279 2 + 2013 FIG00698532: hypothetical protein - none -
fig|6666666.229902.peg.1501 CDS CP003099.1 1432276 1433613 1 + 1338 helicase domain protein - none -
fig|6666666.229902.peg.1502 CDS CP003099.1 1433591 1434535 2 + 945 helicase domain protein - none -
fig|6666666.229902.peg.1503 CDS CP003099.1 1434622 1435008 1 + 387 Ribosome-binding factor A CBSS-138119.3.peg.2719;
NusA-TFII Cluster;
Translation initiation factors bacterial
fig|6666666.229902.peg.1504 CDS CP003099.1 1435008 1435925 3 + 918 tRNA pseudouridine synthase B (EC 4.2.1.70) CBSS-138119.3.peg.2719;
RNA pseudouridine syntheses;
Riboflavin, FMN and FAD metabolism in plants;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229902.peg.1505 CDS CP003099.1 1436119 1435967 -1 - 153 hypothetical protein - none -
fig|6666666.229902.peg.1506 CDS CP003099.1 1436823 1436212 -3 - 612 hypothetical protein - none -
fig|6666666.229902.peg.1507 CDS CP003099.1 1438137 1436950 -3 - 1188 Tyrosyl-tRNA synthetase (EC 6.1.1.1) tRNA aminoacylation, Tyr
fig|6666666.229902.peg.1508 CDS CP003099.1 1438806 1438384 -3 - 423 Sugar/maltose fermentation stimulation protein homolog Fermentations: Mixed acid
fig|6666666.229902.peg.1509 CDS CP003099.1 1439108 1438779 -2 - 330 Sugar/maltose fermentation stimulation protein homolog Fermentations: Mixed acid
fig|6666666.229902.peg.1510 CDS CP003099.1 1439399 1440934 2 + 1536 NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2) Phosphate metabolism
fig|6666666.229902.peg.1511 CDS CP003099.1 1440945 1442369 3 + 1425 NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) Phosphate metabolism
fig|6666666.229902.peg.1512 CDS CP003099.1 1442386 1442520 1 + 135 hypothetical protein - none -
fig|6666666.229902.peg.1513 CDS CP003099.1 1443381 1444235 3 + 855 filamentation induced by cAMP protein Fic-like protein - none -
fig|6666666.229902.peg.1514 CDS CP003099.1 1444769 1445848 2 + 1080 Selenide,water dikinase (EC 2.7.9.3) Selenocysteine metabolism;
tRNA modification Bacteria
fig|6666666.229902.peg.1515 CDS CP003099.1 1446203 1447156 2 + 954 Putative ABC transporter of substrate X, ATP-binding subunit ABC transporter of unknown substrate X
fig|6666666.229902.peg.1516 CDS CP003099.1 1447153 1448022 1 + 870 Putative ABC transporter of substrate X, permease subunit I ABC transporter of unknown substrate X
fig|6666666.229902.peg.1517 CDS CP003099.1 1448019 1448792 3 + 774 Putative ABC transporter of substrate X, permease subunit II ABC transporter of unknown substrate X
fig|6666666.229902.peg.1518 CDS CP003099.1 1448812 1449903 1 + 1092 Possible ABC transporter, periplasmic substrate X binding protein precursor ABC transporter of unknown substrate X
fig|6666666.229902.peg.1519 CDS CP003099.1 1450094 1449954 -2 - 141 Autoinducer 2 (AI-2) ABC transport system, periplasmic AI-2 binding protein LsrB Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229902.peg.1520 CDS CP003099.1 1452119 1450290 -2 - 1830 Excinuclease ABC subunit C DNA repair, UvrABC system
fig|6666666.229902.peg.1521 CDS CP003099.1 1453031 1452258 -2 - 774 3-deoxy-manno-octulosonate cytidylyltransferase (EC 2.7.7.38) KDO2-Lipid A biosynthesis;
KDO2-Lipid A biosynthesis cluster 2
fig|6666666.229902.peg.1522 CDS CP003099.1 1453212 1453033 -3 - 180 FIG002473: Protein YcaR in KDO2-Lipid A biosynthesis cluster Broadly distributed proteins not in subsystems;
KDO2-Lipid A biosynthesis cluster 2
fig|6666666.229902.peg.1523 CDS CP003099.1 1454208 1453234 -3 - 975 Tetraacyldisaccharide 4@1-kinase (EC 2.7.1.130) KDO2-Lipid A biosynthesis;
KDO2-Lipid A biosynthesis cluster 2
fig|6666666.229902.peg.1524 CDS CP003099.1 1455975 1454227 -3 - 1749 Lipid A export ATP-binding/permease protein MsbA (EC 3.6.3.25) KDO2-Lipid A biosynthesis;
KDO2-Lipid A biosynthesis cluster 2
fig|6666666.229902.peg.1525 CDS CP003099.1 1458250 1456022 -1 - 2229 DNA internalization-related competence protein ComEC/Rec2 KDO2-Lipid A biosynthesis;
KDO2-Lipid A biosynthesis cluster 2
fig|6666666.229902.peg.1526 CDS CP003099.1 1458743 1459180 2 + 438 C4-type zinc finger protein, DksA/TraR family - none -
fig|6666666.229902.peg.1527 CDS CP003099.1 1459194 1459487 3 + 294 Poly(A) polymerase (EC 2.7.7.19) Polyadenylation bacterial
fig|6666666.229902.peg.1528 CDS CP003099.1 1459484 1460761 2 + 1278 Poly(A) polymerase (EC 2.7.7.19) Polyadenylation bacterial
fig|6666666.229902.peg.1529 CDS CP003099.1 1460754 1461254 3 + 501 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) Folate Biosynthesis;
Folate biosynthesis cluster
fig|6666666.229902.peg.1530 CDS CP003099.1 1461471 1461325 -3 - 147 hypothetical protein - none -
fig|6666666.229902.peg.1531 CDS CP003099.1 1461686 1461552 -2 - 135 hypothetical protein - none -
fig|6666666.229902.peg.1532 CDS CP003099.1 1464167 1462032 -2 - 2136 Phosphate acetyltransferase (EC 2.3.1.8) Fermentations: Lactate;
Fermentations: Mixed acid;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229902.peg.1533 CDS CP003099.1 1465439 1464237 -2 - 1203 Acetate kinase (EC 2.7.2.1) Fermentations: Lactate;
Fermentations: Mixed acid;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229902.peg.1534 CDS CP003099.1 1465707 1466150 3 + 444 FIG00638298: membrane protein YfbV - none -
fig|6666666.229902.peg.1535 CDS CP003099.1 1466329 1466871 1 + 543 Colicin V production protein - none -
fig|6666666.229902.peg.1536 CDS CP003099.1 1466993 1466868 -2 - 126 hypothetical protein - none -
fig|6666666.229902.peg.1537 CDS CP003099.1 1469090 1467015 -2 - 2076 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) Glycogen metabolism;
Glycogen metabolism cluster;
Maltose and Maltodextrin Utilization;
Maltose utilization cluster
fig|6666666.229902.peg.1538 CDS CP003099.1 1471590 1469200 -3 - 2391 Maltodextrin phosphorylase (EC 2.4.1.1) Glycogen metabolism;
Maltose and Maltodextrin Utilization;
Maltose utilization cluster
fig|6666666.229902.peg.1539 CDS CP003099.1 1471763 1474477 2 + 2715 Transcriptional activator of maltose regulon, MalT Maltose and Maltodextrin Utilization;
Maltose utilization cluster
fig|6666666.229902.peg.1540 CDS CP003099.1 1475427 1474630 -3 - 798 Tellurite resistance protein TehB Tellurite resistance: Chromosomal determinants
fig|6666666.229902.peg.1541 CDS CP003099.1 1475882 1478539 2 + 2658 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) 5-FCL-like protein;
Dehydrogenase complexes;
Methionine Degradation;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229902.peg.1542 CDS CP003099.1 1478568 1480238 3 + 1671 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) 5-FCL-like protein;
Dehydrogenase complexes;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229902.peg.1543 CDS CP003099.1 1480275 1481756 3 + 1482 Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4) 5-FCL-like protein;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate;
TCA Cycle;
TCA Cycle
fig|6666666.229902.peg.1544 CDS CP003099.1 1482738 1482184 -3 - 555 FIG002003: Protein YdjA - none -
fig|6666666.229902.peg.1545 CDS CP003099.1 1482862 1484742 1 + 1881 Signal peptide peptidase SppA (EC 3.4.21.-) - none -
fig|6666666.229902.peg.1546 CDS CP003099.1 1484782 1484988 1 + 207 Chorismate mutase I (EC 5.4.99.5) / Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) Chorismate Synthesis;
Chorismate Synthesis;
Phenylalanine and Tyrosine Branches from Chorismate;
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229902.peg.1547 CDS CP003099.1 1484967 1485131 3 + 165 Chorismate mutase I (EC 5.4.99.5) / Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) Chorismate Synthesis;
Chorismate Synthesis;
Phenylalanine and Tyrosine Branches from Chorismate;
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229902.peg.1548 CDS CP003099.1 1485086 1485904 2 + 819 Chorismate mutase I (EC 5.4.99.5) / Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) Chorismate Synthesis;
Chorismate Synthesis;
Phenylalanine and Tyrosine Branches from Chorismate;
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229902.peg.1549 CDS CP003099.1 1485978 1486601 3 + 624 Hypothetical YciO protein, TsaC/YrdC paralog YrdC-YciO-Sua5 protein family
fig|6666666.229902.peg.1550 CDS CP003099.1 1486656 1487624 3 + 969 Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70) RNA pseudouridine syntheses
fig|6666666.229902.peg.1551 CDS CP003099.1 1487655 1488617 3 + 963 Cys regulon transcriptional activator CysB Cysteine Biosynthesis;
LysR-family proteins in Escherichia coli
fig|6666666.229902.peg.1552 CDS CP003099.1 1488710 1489537 2 + 828 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229902.peg.1553 CDS CP003099.1 1489972 1489652 -1 - 321 putative cytoplasmic protein - none -
fig|6666666.229902.peg.1554 CDS CP003099.1 1490140 1490006 -1 - 135 hypothetical protein - none -
fig|6666666.229902.peg.1555 CDS CP003099.1 1491441 1490443 -3 - 999 Purine nucleotide synthesis repressor Purine nucleotide synthesis regulator
fig|6666666.229902.peg.1556 CDS CP003099.1 1492772 1491747 -2 - 1026 Homoserine O-acetyltransferase (EC 2.3.1.31) Methionine Biosynthesis
fig|6666666.229902.peg.1557 CDS CP003099.1 1493042 1493755 2 + 714 SanA protein - none -
fig|6666666.229902.peg.1558 CDS CP003099.1 1494725 1493739 -2 - 987 Fructose repressor FruR, LacI family Fructose utilization
fig|6666666.229902.peg.1559 CDS CP003099.1 1495561 1495818 1 + 258 FIG00699498: hypothetical protein - none -
fig|6666666.229902.peg.1560 CDS CP003099.1 1495973 1495854 -2 - 120 FIG00697497: hypothetical protein - none -
fig|6666666.229902.peg.1561 CDS CP003099.1 1497313 1496990 -1 - 324 Thiol:disulfide oxidoreductase associated with MetSO reductase Peptide methionine sulfoxide reductase
fig|6666666.229902.peg.1562 CDS CP003099.1 1498127 1497486 -2 - 642 Cytochrome c-type biogenesis protein CcdA homolog, associated with MetSO reductase Peptide methionine sulfoxide reductase
fig|6666666.229902.peg.1563 CDS CP003099.1 1499201 1498131 -2 - 1071 Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11) / Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) Cluster Ytf and putative sugar transporter;
Peptide methionine sulfoxide reductase;
Peptide methionine sulfoxide reductase;
Putative sugar ABC transporter (ytf cluster)
fig|6666666.229902.peg.1564 CDS CP003099.1 1499417 1500109 2 + 693 Carbonic anhydrase (EC 4.2.1.1) - none -
fig|6666666.229902.peg.1565 CDS CP003099.1 1500802 1500215 -1 - 588 21 kDa hemolysin precursor CBSS-160492.1.peg.550
fig|6666666.229902.peg.1566 CDS CP003099.1 1501451 1500867 -2 - 585 Phosphoheptose isomerase (EC 5.3.1.-) CBSS-160492.1.peg.550;
Capsular heptose biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.229902.peg.1567 CDS CP003099.1 1501832 1501464 -2 - 369 Predicted endonuclease distantly related to archaeal Holliday junction resolvase CBSS-160492.1.peg.550
fig|6666666.229902.peg.1568 CDS CP003099.1 1503551 1501833 -2 - 1719 LppC putative lipoprotein CBSS-160492.1.peg.550
fig|6666666.229902.peg.1569 CDS CP003099.1 1503628 1504476 1 + 849 rRNA small subunit methyltransferase I 16S rRNA modification within P site of ribosome;
CBSS-160492.1.peg.550;
Heat shock dnaK gene cluster extended
fig|6666666.229902.peg.1570 CDS CP003099.1 1504746 1506335 3 + 1590 Glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Respiratory dehydrogenases 1
fig|6666666.229902.peg.1571 CDS CP003099.1 1506512 1507315 2 + 804 NADH dehydrogenase (EC 1.6.99.3) Respiratory dehydrogenases 1;
Riboflavin synthesis cluster
fig|6666666.229902.peg.1572 CDS CP003099.1 1507312 1507848 1 + 537 NADH dehydrogenase (EC 1.6.99.3) Respiratory dehydrogenases 1;
Riboflavin synthesis cluster
fig|6666666.229902.peg.1573 CDS CP003099.1 1508540 1507950 -2 - 591 FMN-dependent NADH-azoreductase - none -
fig|6666666.229902.peg.1574 CDS CP003099.1 1508732 1509790 2 + 1059 Possible protease sohB (EC 3.4.21.-) - none -
fig|6666666.229902.peg.1575 CDS CP003099.1 1509979 1510803 1 + 825 Outer membrane protein A precursor Osmoregulation
fig|6666666.229902.peg.1576 CDS CP003099.1 1511736 1510861 -3 - 876 Ribulosamine/erythrulosamine 3-kinase potentially involved in protein deglycation Protein deglycation
fig|6666666.229902.peg.1577 CDS CP003099.1 1511977 1513908 1 + 1932 Threonyl-tRNA synthetase (EC 6.1.1.3) tRNA aminoacylation, Thr
fig|6666666.229902.peg.1578 CDS CP003099.1 1514179 1514532 1 + 354 Type III restriction-modification system methylation subunit (EC 2.1.1.72) Restriction-Modification System
fig|6666666.229902.peg.1579 CDS CP003099.1 1514510 1514995 2 + 486 Type III restriction-modification system restriction subunit (EC 3.1.21.5) - none -
fig|6666666.229902.peg.1580 CDS CP003099.1 1515068 1515745 2 + 678 Type III restriction-modification system restriction subunit (EC 3.1.21.5) - none -
fig|6666666.229902.peg.1581 CDS CP003099.1 1515847 1515734 -1 - 114 hypothetical protein - none -
fig|6666666.229902.peg.1582 CDS CP003099.1 1516641 1515862 -3 - 780 Ferredoxin--NADP(+) reductase (EC 1.18.1.2) Biogenesis of cytochrome c oxidases
fig|6666666.229902.peg.1583 CDS CP003099.1 1517016 1517495 3 + 480 Translation initiation factor 3 Translation initiation factors bacterial
fig|6666666.229902.peg.1584 CDS CP003099.1 1517639 1517496 -2 - 144 hypothetical protein - none -
fig|6666666.229902.peg.1585 CDS CP003099.1 1517970 1518323 3 + 354 LSU ribosomal protein L20p - none -
fig|6666666.229902.peg.1586 CDS CP003099.1 1518485 1518372 -2 - 114 hypothetical protein - none -
fig|6666666.229902.peg.1587 CDS CP003099.1 1519923 1519804 -3 - 120 hypothetical protein - none -
fig|6666666.229902.peg.1588 CDS CP003099.1 1520014 1520964 1 + 951 Tagatose 1,6-bisphosphate aldolase (EC 4.1.2.40) - none -
fig|6666666.229902.peg.1589 CDS CP003099.1 1520982 1522274 3 + 1293 Tagatose-6-phosphate kinase GatZ (EC 2.7.1.144) D-Tagatose and Galactitol Utilization
fig|6666666.229902.peg.1590 CDS CP003099.1 1522252 1522701 1 + 450 PTS system, galactitol-specific IIA component (EC 2.7.1.69) D-Tagatose and Galactitol Utilization
fig|6666666.229902.peg.1591 CDS CP003099.1 1522720 1523004 1 + 285 PTS system, galactitol-specific IIB component (EC 2.7.1.69) D-Tagatose and Galactitol Utilization
fig|6666666.229902.peg.1592 CDS CP003099.1 1523010 1524374 3 + 1365 PTS system, galactitol-specific IIC component (EC 2.7.1.69) D-Tagatose and Galactitol Utilization
fig|6666666.229902.peg.1593 CDS CP003099.1 1524397 1525440 1 + 1044 Galactitol-1-phosphate 5-dehydrogenase (EC 1.1.1.251) D-Tagatose and Galactitol Utilization
fig|6666666.229902.peg.1594 CDS CP003099.1 1525508 1526242 2 + 735 Galactitol utilization operon repressor D-Tagatose and Galactitol Utilization
fig|6666666.229902.peg.1595 CDS CP003099.1 1528235 1526385 -2 - 1851 1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis;
Pyridoxin (Vitamin B6) Biosynthesis;
Thiamin biosynthesis
fig|6666666.229902.peg.1596 CDS CP003099.1 1529210 1528320 -2 - 891 Octaprenyl diphosphate synthase (EC 2.5.1.90) / Dimethylallyltransferase (EC 2.5.1.1) / (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10) / Geranylgeranyl diphosphate synthase (EC 2.5.1.29) Isoprenoid Biosynthesis;
Isoprenoid Biosynthesis;
Isoprenoid Biosynthesis: Interconversions;
Isoprenoinds for Quinones;
Isoprenoinds for Quinones;
Isoprenoinds for Quinones;
Isoprenoinds for Quinones;
Polyprenyl Diphosphate Biosynthesis;
Polyprenyl Diphosphate Biosynthesis;
Polyprenyl Diphosphate Biosynthesis
fig|6666666.229902.peg.1597 CDS CP003099.1 1529466 1529221 -3 - 246 Exodeoxyribonuclease VII small subunit (EC 3.1.11.6) DNA repair, bacterial;
Purine salvage cluster
fig|6666666.229902.peg.1598 CDS CP003099.1 1529691 1530587 3 + 897 Acetyl-coenzyme A carboxyl transferase beta chain (EC 6.4.1.2) Fatty Acid Biosynthesis FASII
fig|6666666.229902.peg.1599 CDS CP003099.1 1530610 1531956 1 + 1347 Dihydrofolate synthase (EC 6.3.2.12) @ Folylpolyglutamate synthase (EC 6.3.2.17) Folate Biosynthesis;
Folate Biosynthesis
fig|6666666.229902.peg.1600 CDS CP003099.1 1532654 1532013 -2 - 642 Hypothetical, related to broad specificity phosphatases COG0406 CBSS-196164.1.peg.461
fig|6666666.229902.peg.1601 CDS CP003099.1 1534173 1532716 -3 - 1458 Cardiolipin synthetase (EC 2.7.8.-) Cardiolipin synthesis;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229902.peg.1602 CDS CP003099.1 1535095 1534187 -1 - 909 Putative surface protein - none -
fig|6666666.229902.peg.1603 CDS CP003099.1 1535214 1535909 3 + 696 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses;
Ribosome biogenesis bacterial;
tRNA modification Bacteria
fig|6666666.229902.peg.1604 CDS CP003099.1 1535947 1536810 1 + 864 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229902.peg.1605 CDS CP003099.1 1536893 1537216 2 + 324 Alkylphosphonate utilization operon protein PhnA - none -
fig|6666666.229902.peg.1606 CDS CP003099.1 1538613 1538023 -3 - 591 hypothetical protein - none -
fig|6666666.229902.peg.1607 CDS CP003099.1 1538960 1538697 -2 - 264 hypothetical protein - none -
fig|6666666.229902.peg.1608 CDS CP003099.1 1539529 1539798 1 + 270 hypothetical protein - none -
fig|6666666.229902.peg.1609 CDS CP003099.1 1540428 1540691 3 + 264 Esterase/lipase - none -
fig|6666666.229902.peg.1610 CDS CP003099.1 1540688 1541806 2 + 1119 Esterase/lipase - none -
fig|6666666.229902.peg.1611 CDS CP003099.1 1543451 1542051 -2 - 1401 RND efflux system, outer membrane lipoprotein CmeC Multidrug Resistance Efflux Pumps
fig|6666666.229902.peg.1612 CDS CP003099.1 1543961 1543527 -2 - 435 Macrolide export ATP-binding/permease protein MacB (EC 3.6.3.-) Multidrug Resistance Efflux Pumps
fig|6666666.229902.peg.1613 CDS CP003099.1 1545460 1543958 -1 - 1503 Macrolide export ATP-binding/permease protein MacB (EC 3.6.3.-) Multidrug Resistance Efflux Pumps
fig|6666666.229902.peg.1614 CDS CP003099.1 1546664 1545480 -2 - 1185 Macrolide-specific efflux protein MacA Multidrug Resistance Efflux Pumps
fig|6666666.229902.peg.1615 CDS CP003099.1 1546865 1548556 2 + 1692 Glutaminyl-tRNA synthetase (EC 6.1.1.18) tRNA aminoacylation, Glu and Gln
fig|6666666.229902.peg.1616 CDS CP003099.1 1548628 1549062 1 + 435 YcgN (Fragment) CBSS-243277.1.peg.4359
fig|6666666.229902.peg.1617 CDS CP003099.1 1549162 1549722 1 + 561 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) Glycogen metabolism;
Glycogen metabolism cluster;
Maltose and Maltodextrin Utilization;
Maltose utilization cluster
fig|6666666.229902.peg.1618 CDS CP003099.1 1549719 1551914 3 + 2196 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) Glycogen metabolism;
Glycogen metabolism cluster
fig|6666666.229902.peg.1619 CDS CP003099.1 1551911 1553920 2 + 2010 Glycogen debranching enzyme (EC 3.2.1.-) Glycogen metabolism;
Glycogen metabolism cluster
fig|6666666.229902.peg.1620 CDS CP003099.1 1553947 1555257 1 + 1311 Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27) Glycogen metabolism;
Glycogen metabolism cluster
fig|6666666.229902.peg.1621 CDS CP003099.1 1555238 1555375 2 + 138 Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27) Glycogen metabolism;
Glycogen metabolism cluster
fig|6666666.229902.peg.1622 CDS CP003099.1 1555459 1556898 1 + 1440 Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21) Glycogen metabolism;
Glycogen metabolism cluster
fig|6666666.229902.peg.1623 CDS CP003099.1 1557022 1559487 1 + 2466 Glycogen phosphorylase (EC 2.4.1.1) Glycogen metabolism;
Glycogen metabolism cluster;
Maltose and Maltodextrin Utilization
fig|6666666.229902.peg.1624 CDS CP003099.1 1560211 1559606 -1 - 606 DedA protein DedA family of inner membrane proteins;
Uptake of selenate and selenite
fig|6666666.229902.peg.1625 CDS CP003099.1 1560425 1560712 2 + 288 LSU ribosomal protein L25p Transcription repair cluster
fig|6666666.229902.peg.1626 CDS CP003099.1 1560860 1561468 2 + 609 lipoprotein HlpB - none -
fig|6666666.229902.peg.1627 CDS CP003099.1 1561616 1562497 2 + 882 Murein-DD-endopeptidase (EC 3.4.99.-) Peptidoglycan Biosynthesis
fig|6666666.229902.peg.1628 CDS CP003099.1 1562675 1564003 2 + 1329 Chromosome partition protein MukF DNA structural proteins, bacterial;
MukBEF Chromosome Condensation
fig|6666666.229902.peg.1629 CDS CP003099.1 1564031 1564168 2 + 138 hypothetical protein - none -
fig|6666666.229902.peg.1630 CDS CP003099.1 1564183 1564389 1 + 207 Putative 2-acylglycerophosphoethanolamine acyltransferase / acyl-acyl carrier protein synthetase (EC 6.2.1.20) - none -
fig|6666666.229902.peg.1631 CDS CP003099.1 1564439 1564846 2 + 408 Putative 2-acylglycerophosphoethanolamine acyltransferase / acyl-acyl carrier protein synthetase (EC 6.2.1.20) - none -
fig|6666666.229902.peg.1632 CDS CP003099.1 1564864 1567641 1 + 2778 Putative 2-acylglycerophosphoethanolamine acyltransferase / acyl-acyl carrier protein synthetase (EC 6.2.1.20) - none -
fig|6666666.229902.peg.1633 CDS CP003099.1 1567662 1567904 3 + 243 Chromosome partition protein MukE DNA structural proteins, bacterial;
MukBEF Chromosome Condensation
fig|6666666.229902.peg.1634 CDS CP003099.1 1567934 1568401 2 + 468 Chromosome partition protein MukE DNA structural proteins, bacterial;
MukBEF Chromosome Condensation
fig|6666666.229902.peg.1635 CDS CP003099.1 1568401 1568907 1 + 507 Chromosome partition protein MukB DNA structural proteins, bacterial;
MukBEF Chromosome Condensation
fig|6666666.229902.peg.1636 CDS CP003099.1 1568921 1572892 2 + 3972 Chromosome partition protein MukB DNA structural proteins, bacterial;
MukBEF Chromosome Condensation
fig|6666666.229902.peg.1637 CDS CP003099.1 1572968 1573822 2 + 855 Integral membrane protein - none -
fig|6666666.229902.peg.1638 CDS CP003099.1 1574015 1575277 2 + 1263 Exodeoxyribonuclease I (EC 3.1.11.1) DNA Repair Base Excision
fig|6666666.229902.peg.1639 CDS CP003099.1 1575525 1575698 3 + 174 hypothetical protein - none -
fig|6666666.229902.peg.1640 CDS CP003099.1 1575741 1576007 3 + 267 Mobile element protein - none -
fig|6666666.229902.peg.1641 CDS CP003099.1 1575994 1576503 1 + 510 Mobile element protein - none -
fig|6666666.229902.peg.1642 CDS CP003099.1 1576823 1577440 2 + 618 FIG00698503: hypothetical protein - none -
fig|6666666.229902.peg.1643 CDS CP003099.1 1577568 1577858 3 + 291 FIG00698722: hypothetical protein - none -
fig|6666666.229902.peg.1644 CDS CP003099.1 1578679 1579164 1 + 486 Ferritin-like protein 2 - none -
fig|6666666.229902.peg.1645 CDS CP003099.1 1579180 1579677 1 + 498 Ferritin-like protein 2 - none -
fig|6666666.229902.peg.1646 CDS CP003099.1 1579909 1579739 -1 - 171 hypothetical protein - none -
fig|6666666.229902.peg.1647 CDS CP003099.1 1580018 1580791 2 + 774 Fumarate and nitrate reduction regulatory protein Oxidative stress
fig|6666666.229902.peg.1648 CDS CP003099.1 1580910 1581842 3 + 933 Universal stress protein E Universal stress protein family
fig|6666666.229902.peg.1649 CDS CP003099.1 1581969 1582805 3 + 837 ABC-type Co2+ transport system, periplasmic component - none -
fig|6666666.229902.peg.1650 CDS CP003099.1 1585445 1582839 -2 - 2607 DNA topoisomerase I (EC 5.99.1.2) CBSS-272943.3.peg.1367;
Conserved gene cluster associated with Met-tRNA formyltransferase;
DNA topoisomerases, Type I, ATP-independent
fig|6666666.229902.peg.1651 CDS CP003099.1 1586519 1585683 -2 - 837 COG0613, Predicted metal-dependent phosphoesterases (PHP family) YrdC-YciO-Sua5 protein family;
tRNA modification Bacteria
fig|6666666.229902.peg.1652 CDS CP003099.1 1587552 1586533 -3 - 1020 Dihydroorotate dehydrogenase (EC 1.3.3.1) De Novo Pyrimidine Synthesis
fig|6666666.229902.peg.1653 CDS CP003099.1 1590234 1587625 -3 - 2610 Membrane alanine aminopeptidase N (EC 3.4.11.2) Aminopeptidases (EC 3.4.11.-)
fig|6666666.229902.peg.1654 CDS CP003099.1 1590656 1591846 2 + 1191 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229902.peg.1655 CDS CP003099.1 1592460 1591897 -3 - 564 Transcriptional regulator, TetR family - none -
fig|6666666.229902.peg.1656 CDS CP003099.1 1592608 1593588 1 + 981 HlyD family secretion protein - none -
fig|6666666.229902.peg.1657 CDS CP003099.1 1593591 1596335 3 + 2745 ABC-type multidrug transport system, permease component - none -
fig|6666666.229902.peg.1658 CDS CP003099.1 1596337 1597464 1 + 1128 ABC-type multidrug transport system, permease component - none -
fig|6666666.229902.peg.1659 CDS CP003099.1 1597484 1598902 2 + 1419 Outer membrane component of tripartite multidrug resistance system Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria
fig|6666666.229902.peg.1660 CDS CP003099.1 1598880 1599011 3 + 132 hypothetical protein - none -
fig|6666666.229902.peg.1661 CDS CP003099.1 1599030 1599482 3 + 453 Vitamin B12 ABC transporter, permease component BtuC - none -
fig|6666666.229902.peg.1662 CDS CP003099.1 1599525 1600049 3 + 525 Vitamin B12 ABC transporter, permease component BtuC - none -
fig|6666666.229902.peg.1663 CDS CP003099.1 1600049 1600843 2 + 795 Glutathione synthetase (EC 6.3.2.3) Cluster containing Glutathione synthetase;
Glutathione: Biosynthesis and gamma-glutamyl cycle;
Heat shock dnaK gene cluster extended
fig|6666666.229902.peg.1664 CDS CP003099.1 1600856 1601890 2 + 1035 FIG00362752: hypothetical protein - none -
fig|6666666.229902.peg.1665 CDS CP003099.1 1601972 1602181 2 + 210 Molybdate-binding domain of ModE Molybdenum cofactor biosynthesis
fig|6666666.229902.peg.1666 CDS CP003099.1 1603808 1602300 -2 - 1509 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins Ton and Tol transport systems
fig|6666666.229902.peg.1667 CDS CP003099.1 1604696 1603836 -2 - 861 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins Ton and Tol transport systems
fig|6666666.229902.peg.1668 CDS CP003099.1 1605540 1604791 -3 - 750 ABC transporter ATP-binding protein - none -
fig|6666666.229902.peg.1669 CDS CP003099.1 1606550 1605537 -2 - 1014 Vitamin B12 ABC transporter, permease component BtuC - none -
fig|6666666.229902.peg.1670 CDS CP003099.1 1606834 1606550 -1 - 285 ABC transporter, solute-binding protein - none -
fig|6666666.229902.peg.1671 CDS CP003099.1 1606808 1608574 2 + 1767 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins Ton and Tol transport systems
fig|6666666.229902.peg.1672 CDS CP003099.1 1609080 1608664 -3 - 417 putative membrane protein - none -
fig|6666666.229902.peg.1673 CDS CP003099.1 1609221 1610186 3 + 966 tRNA(Cytosine32)-2-thiocytidine synthetase CBSS-326442.4.peg.1852;
tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229902.peg.1674 CDS CP003099.1 1610769 1610281 -3 - 489 Probable lipoprotein nlpC precursor - none -
fig|6666666.229902.peg.1675 CDS CP003099.1 1611117 1610821 -3 - 297 Integration host factor alpha subunit DNA structural proteins, bacterial
fig|6666666.229902.peg.1676 CDS CP003099.1 1613511 1611121 -3 - 2391 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) tRNA aminoacylation, Phe
fig|6666666.229902.peg.1677 CDS CP003099.1 1614520 1613531 -1 - 990 Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20) tRNA aminoacylation, Phe
fig|6666666.229902.peg.1678 CDS CP003099.1 1615735 1614860 -1 - 876 Probable protease htpX homolog - none -
fig|6666666.229902.peg.1679 CDS CP003099.1 1616418 1617353 3 + 936 Arabinose 5-phosphate isomerase (EC 5.3.1.13) KDO2-Lipid A biosynthesis
fig|6666666.229902.peg.1680 CDS CP003099.1 1617353 1617907 2 + 555 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC 3.1.3.45) KDO2-Lipid A biosynthesis
fig|6666666.229902.peg.1681 CDS CP003099.1 1618075 1619622 1 + 1548 Anthranilate synthase, aminase component (EC 4.1.3.27) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229902.peg.1682 CDS CP003099.1 1619633 1620223 2 + 591 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229902.peg.1683 CDS CP003099.1 1620297 1620689 3 + 393 putative - none -
fig|6666666.229902.peg.1684 CDS CP003099.1 1620701 1621702 2 + 1002 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) Auxin biosynthesis;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229902.peg.1685 CDS CP003099.1 1621797 1622075 3 + 279 HigB toxin protein Toxin-antitoxin replicon stabilization systems
fig|6666666.229902.peg.1686 CDS CP003099.1 1622091 1622363 3 + 273 HigA protein (antitoxin to HigB) Toxin-antitoxin replicon stabilization systems
fig|6666666.229902.peg.1687 CDS CP003099.1 1622372 1623802 2 + 1431 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24) Auxin biosynthesis;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis;
Tryptophan synthesis
fig|6666666.229902.peg.1688 CDS CP003099.1 1624065 1624226 3 + 162 Hydrogenase-2 operon protein hybE - none -
fig|6666666.229902.peg.1689 CDS CP003099.1 1624256 1624531 2 + 276 [NiFe] hydrogenase metallocenter assembly protein HybG G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229902.peg.1690 CDS CP003099.1 1624895 1624776 -2 - 120 hypothetical protein - none -
fig|6666666.229902.peg.1691 CDS CP003099.1 1625407 1625523 1 + 117 hypothetical protein - none -
fig|6666666.229902.peg.1692 CDS CP003099.1 1625557 1625823 1 + 267 Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3) Na+ translocating decarboxylases and related biotin-dependent enzymes;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229902.peg.1693 CDS CP003099.1 1625839 1627635 1 + 1797 Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3) Na+ translocating decarboxylases and related biotin-dependent enzymes;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229902.peg.1694 CDS CP003099.1 1627646 1628950 2 + 1305 Oxaloacetate decarboxylase beta chain (EC 4.1.1.3) Na+ translocating decarboxylases and related biotin-dependent enzymes;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229902.peg.1695 CDS CP003099.1 1630805 1629354 -2 - 1452 Outer membrane receptor for lactoferrin or transferrin, TonB-dependent protein A - none -
fig|6666666.229902.peg.1696 CDS CP003099.1 1631797 1630853 -1 - 945 Outer membrane receptor for lactoferrin or transferrin, TonB-dependent protein A - none -
fig|6666666.229902.peg.1697 CDS CP003099.1 1632428 1632297 -2 - 132 hypothetical protein - none -
fig|6666666.229902.peg.1698 CDS CP003099.1 1632461 1633228 2 + 768 3-hydroxypropionate dehydrogenase (EC 1.1.1.298) - none -
fig|6666666.229902.peg.1699 CDS CP003099.1 1633238 1634431 2 + 1194 Tryptophan synthase beta chain (EC 4.2.1.20) Auxin biosynthesis;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229902.peg.1700 CDS CP003099.1 1634434 1635240 1 + 807 Tryptophan synthase alpha chain (EC 4.2.1.20) Auxin biosynthesis;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229902.peg.1701 CDS CP003099.1 1635515 1637200 2 + 1686 Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) Ribonucleotide reduction
fig|6666666.229902.peg.1702 CDS CP003099.1 1637190 1638320 3 + 1131 Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) Ribonucleotide reduction
fig|6666666.229902.peg.1703 CDS CP003099.1 1638606 1640012 3 + 1407 Pyruvate kinase (EC 2.7.1.40) Entner-Doudoroff Pathway;
Glycerate metabolism;
Glycolysis and Gluconeogenesis;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229902.peg.1704 CDS CP003099.1 1640418 1640116 -3 - 303 Autoinducer 2 (AI-2) modifying protein LsrG Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229902.peg.1705 CDS CP003099.1 1641329 1640451 -2 - 879 Autoinducer 2 (AI-2) aldolase LsrF (EC 4.2.1.-) Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229902.peg.1706 CDS CP003099.1 1642450 1641353 -1 - 1098 Autoinducer 2 (AI-2) ABC transport system, periplasmic AI-2 binding protein LsrB Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229902.peg.1707 CDS CP003099.1 1643479 1642559 -1 - 921 Autoinducer 2 (AI-2) ABC transport system, membrane channel protein LsrD Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229902.peg.1708 CDS CP003099.1 1644524 1643493 -2 - 1032 Autoinducer 2 (AI-2) ABC transport system, membrane channel protein LsrC Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229902.peg.1709 CDS CP003099.1 1644818 1644534 -2 - 285 Autoinducer 2 (AI-2) ABC transport system, fused AI2 transporter subunits and ATP-binding component Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229902.peg.1710 CDS CP003099.1 1645835 1644855 -2 - 981 Autoinducer 2 (AI-2) ABC transport system, fused AI2 transporter subunits and ATP-binding component Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229902.peg.1711 CDS CP003099.1 1645980 1645822 -3 - 159 Autoinducer 2 (AI-2) ABC transport system, fused AI2 transporter subunits and ATP-binding component Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229902.peg.1712 CDS CP003099.1 1646294 1647259 2 + 966 LsrR, transcriptional repressor of lsr operon Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229902.peg.1713 CDS CP003099.1 1647309 1648883 3 + 1575 Autoinducer 2 (AI-2) kinase LsrK (EC 2.7.1.-) Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229902.peg.1714 CDS CP003099.1 1649700 1648972 -3 - 729 Dethiobiotin synthetase (EC 6.3.3.3) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229902.peg.1715 CDS CP003099.1 1651006 1649777 -1 - 1230 Mlc, transcriptional repressor of MalT (the transcriptional activator of maltose regulon) and manXYZ operon Maltose and Maltodextrin Utilization
fig|6666666.229902.peg.1716 CDS CP003099.1 1651202 1652605 2 + 1404 Asparaginyl-tRNA synthetase (EC 6.1.1.22) tRNA aminoacylation, Asp and Asn;
tRNA modification Archaea
fig|6666666.229902.peg.1717 CDS CP003099.1 1653229 1652768 -1 - 462 Stringent starvation protein B Carbon Starvation
fig|6666666.229902.peg.1718 CDS CP003099.1 1653882 1653241 -3 - 642 Stringent starvation protein A Carbon Starvation
fig|6666666.229902.peg.1719 CDS CP003099.1 1654536 1654123 -3 - 414 Molybdenum cofactor biosynthesis protein MoaE Molybdenum cofactor biosynthesis;
ar-104-EC Molybdenum cofactor biosynthesis moaABCDE
fig|6666666.229902.peg.1720 CDS CP003099.1 1654785 1654537 -3 - 249 Molybdenum cofactor biosynthesis protein MoaD Molybdenum cofactor biosynthesis;
ar-104-EC Molybdenum cofactor biosynthesis moaABCDE
fig|6666666.229902.peg.1721 CDS CP003099.1 1655306 1654785 -2 - 522 Molybdenum cofactor biosynthesis protein MoaC Molybdenum cofactor biosynthesis;
ar-104-EC Molybdenum cofactor biosynthesis moaABCDE
fig|6666666.229902.peg.1722 CDS CP003099.1 1656332 1655319 -2 - 1014 Molybdenum cofactor biosynthesis protein MoaA Molybdenum cofactor biosynthesis;
ar-104-EC Molybdenum cofactor biosynthesis moaABCDE
fig|6666666.229902.peg.1723 CDS CP003099.1 1656690 1657658 3 + 969 FIG002813: LPPG:FO 2-phospho-L-lactate transferase like, CofD-like - none -
fig|6666666.229902.peg.1724 CDS CP003099.1 1658397 1657723 -3 - 675 Putative DNA-binding protein in cluster with Type I restriction-modification system Restriction-Modification System
fig|6666666.229902.peg.1725 CDS CP003099.1 1658897 1659601 2 + 705 Alpha-aspartyl dipeptidase Peptidase E (EC 3.4.13.21) Dipeptidases (EC 3.4.13.-)
fig|6666666.229902.peg.1726 CDS CP003099.1 1661142 1659685 -3 - 1458 tRNA S(4)U 4-thiouridine synthase (former ThiI) / Rhodanese-like domain required for thiamine synthesis Thiamin biosynthesis;
Thiamin biosynthesis;
tRNA modification Archaea;
tRNA modification Archaea;
tRNA modification Bacteria;
tRNA modification Bacteria
fig|6666666.229902.peg.1727 CDS CP003099.1 1661486 1662547 2 + 1062 Cytochrome c-type protein TorY - none -
fig|6666666.229902.peg.1728 CDS CP003099.1 1662608 1665088 2 + 2481 Trimethylamine-N-oxide reductase (EC 1.6.6.9) - none -
fig|6666666.229902.peg.1729 CDS CP003099.1 1665177 1665040 -3 - 138 hypothetical protein - none -
fig|6666666.229902.peg.1730 CDS CP003099.1 1665937 1665158 -1 - 780 Protein of unknown function DUF419 - none -
fig|6666666.229902.peg.1731 CDS CP003099.1 1666167 1667624 3 + 1458 2-oxoglutarate/malate translocator - none -
fig|6666666.229902.peg.1732 CDS CP003099.1 1667839 1668093 1 + 255 RelB/StbD replicon stabilization protein (antitoxin to RelE/StbE) Toxin-antitoxin replicon stabilization systems
fig|6666666.229902.peg.1733 CDS CP003099.1 1668090 1668242 3 + 153 StbE replicon stabilization toxin - none -
fig|6666666.229902.peg.1734 CDS CP003099.1 1668226 1668372 1 + 147 RelE/StbE replicon stabilization toxin Toxin-antitoxin replicon stabilization systems
fig|6666666.229902.peg.1735 CDS CP003099.1 1669170 1668385 -3 - 786 tRNA pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses;
tRNA modification Archaea;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229902.peg.1736 CDS CP003099.1 1669723 1669331 -1 - 393 SSU ribosomal protein S9p (S16e) - none -
fig|6666666.229902.peg.1737 CDS CP003099.1 1670168 1669740 -2 - 429 LSU ribosomal protein L13p (L13Ae) - none -
fig|6666666.229902.peg.1738 CDS CP003099.1 1670658 1670410 -3 - 249 hypothetical protein - none -
fig|6666666.229902.peg.1739 CDS CP003099.1 1671005 1670658 -2 - 348 hypothetical protein - none -
fig|6666666.229902.peg.1740 CDS CP003099.1 1672997 1671018 -2 - 1980 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) DNA repair, bacterial RecBCD pathway
fig|6666666.229902.peg.1741 CDS CP003099.1 1675762 1672997 -1 - 2766 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) DNA repair, bacterial RecBCD pathway
fig|6666666.229902.peg.1742 CDS CP003099.1 1676672 1675851 -2 - 822 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) DNA repair, bacterial RecBCD pathway
fig|6666666.229902.peg.1743 CDS CP003099.1 1677099 1676743 -3 - 357 DsrE-related protein - none -
fig|6666666.229902.peg.1744 CDS CP003099.1 1678052 1677522 -2 - 531 3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabA form (EC 4.2.1.59) Fatty Acid Biosynthesis FASII
fig|6666666.229902.peg.1745 CDS CP003099.1 1679979 1678195 -3 - 1785 ATP-dependent protease La (EC 3.4.21.53) Type II Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229902.peg.1746 CDS CP003099.1 1680126 1680572 3 + 447 Macrodomain Ter protein YcbG - none -
fig|6666666.229902.peg.1747 CDS CP003099.1 1680838 1680638 -1 - 201 Cold shock protein CspD Cold shock, CspA family of proteins
fig|6666666.229902.peg.1748 CDS CP003099.1 1681203 1681039 -3 - 165 hypothetical protein - none -
fig|6666666.229902.peg.1749 CDS CP003099.1 1681970 1681257 -2 - 714 tRNA pseudouridine synthase C (EC 4.2.1.70) RNA pseudouridine syntheses;
tRNA modification Bacteria
fig|6666666.229902.peg.1750 CDS CP003099.1 1682308 1681967 -1 - 342 Hypothetical protein YqcC (clustered with tRNA pseudouridine synthase C) - none -
fig|6666666.229902.peg.1751 CDS CP003099.1 1682388 1683170 3 + 783 Zn-ribbon-containing, possibly nucleic-acid-binding protein - none -
fig|6666666.229902.peg.1752 CDS CP003099.1 1683179 1684138 2 + 960 NADPH dependent preQ0 reductase (EC 1.7.1.13) - none -
fig|6666666.229902.peg.1753 CDS CP003099.1 1685103 1684930 -3 - 174 Phosphoglycerate transport system transcriptional regulatory protein PgtA Phosphoglycerate transport system
fig|6666666.229902.peg.1754 CDS CP003099.1 1685312 1685109 -2 - 204 Phosphoglycerate transport system transcriptional regulatory protein PgtA Phosphoglycerate transport system
fig|6666666.229902.peg.1755 CDS CP003099.1 1685790 1685305 -3 - 486 Phosphoglycerate transport system sensor protein PgtB (EC 2.7.3.-) Phosphoglycerate transport system
fig|6666666.229902.peg.1756 CDS CP003099.1 1686995 1685787 -2 - 1209 Phosphoglycerate transport system sensor protein PgtB (EC 2.7.3.-) Phosphoglycerate transport system
fig|6666666.229902.peg.1757 CDS CP003099.1 1688536 1687001 -1 - 1536 Phosphoglycerate transport regulatory protein PgtC Phosphoglycerate transport system
fig|6666666.229902.peg.1758 CDS CP003099.1 1688910 1689908 3 + 999 ABC-type Fe3+ transport system, periplasmic component - none -
fig|6666666.229902.peg.1759 CDS CP003099.1 1689930 1690553 3 + 624 Thiamin ABC transporter, ATPase component Thiamin biosynthesis
fig|6666666.229902.peg.1760 CDS CP003099.1 1690567 1691010 1 + 444 Thiamin ABC transporter, ATPase component Thiamin biosynthesis
fig|6666666.229902.peg.1761 CDS CP003099.1 1691013 1692707 3 + 1695 Ferric iron ABC transporter, permease protein Iron acquisition in Streptococcus
fig|6666666.229902.peg.1762 CDS CP003099.1 1692729 1693787 3 + 1059 Ferric iron ABC transporter, ATP-binding protein Iron acquisition in Streptococcus
fig|6666666.229902.peg.1763 CDS CP003099.1 1694451 1693915 -3 - 537 Putative transporting ATPase - none -
fig|6666666.229902.peg.1764 CDS CP003099.1 1696501 1694615 -1 - 1887 Cell division protein FtsH (EC 3.4.24.-) Bacterial Cell Division;
Cell division-ribosomal stress proteins cluster;
Folate biosynthesis cluster
fig|6666666.229902.peg.1765 CDS CP003099.1 1697237 1696608 -2 - 630 Cell division protein FtsJ / Ribosomal RNA large subunit methyltransferase E (EC 2.1.1.-) ## LSU rRNA Um2552 Bacterial Cell Division;
RNA methylation
fig|6666666.229902.peg.1766 CDS CP003099.1 1698112 1697372 -1 - 741 Formyltetrahydrofolate deformylase (EC 3.5.1.10) 5-FCL-like protein;
One-carbon metabolism by tetrahydropterines
fig|6666666.229902.peg.1767 CDS CP003099.1 1698689 1698291 -2 - 399 DNA-binding protein H-NS - none -
fig|6666666.229902.peg.1768 CDS CP003099.1 1699131 1700663 3 + 1533 Na+/H+ antiporter - none -
fig|6666666.229902.peg.1770 CDS CP003099.1 1707750 1706923 -3 - 828 Glutamate racemase (EC 5.1.1.3) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Peptidoglycan Biosynthesis
fig|6666666.229902.peg.1771 CDS CP003099.1 1708278 1707781 -3 - 498 Chorismate--pyruvate lyase (EC 4.1.3.40) Ubiquinone Biosynthesis
fig|6666666.229902.peg.1772 CDS CP003099.1 1710352 1708271 -1 - 2082 ATP-dependent DNA helicase RecG (EC 3.6.1.-) - none -
fig|6666666.229902.peg.1773 CDS CP003099.1 1712476 1710353 -1 - 2124 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II / Guanosine-3@1,5@1-bis(diphosphate) 3@1-pyrophosphohydrolase (EC 3.1.7.2) CBSS-176299.4.peg.1292;
CBSS-176299.4.peg.1292;
Stringent Response, (p)ppGpp metabolism;
Stringent Response, (p)ppGpp metabolism
fig|6666666.229902.peg.1774 CDS CP003099.1 1712788 1712522 -1 - 267 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) CBSS-176299.4.peg.1292;
RNA polymerase bacterial
fig|6666666.229902.peg.1775 CDS CP003099.1 1713484 1712846 -1 - 639 Guanylate kinase (EC 2.7.4.8) CBSS-323097.3.peg.2594;
Purine conversions
fig|6666666.229902.peg.1776 CDS CP003099.1 1713497 1713646 2 + 150 hypothetical protein - none -
fig|6666666.229902.peg.1777 CDS CP003099.1 1713726 1714730 3 + 1005 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis;
Pyridoxin (Vitamin B6) Biosynthesis
fig|6666666.229902.peg.1778 CDS CP003099.1 1715240 1714824 -2 - 417 conserved hypothetical protein; possible membrane protein - none -
fig|6666666.229902.peg.1779 CDS CP003099.1 1715361 1715699 3 + 339 Putative oligoketide cyclase/lipid transport protein, similarity with yeast ubiquinone-binding protein YOL008W - none -
fig|6666666.229902.peg.1780 CDS CP003099.1 1715733 1716026 3 + 294 UPF0125 protein yfjF - none -
fig|6666666.229902.peg.1781 CDS CP003099.1 1716059 1717252 2 + 1194 FIG074102: hypothetical protein - none -
fig|6666666.229902.peg.1782 CDS CP003099.1 1717259 1718593 2 + 1335 Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) DNA repair, bacterial;
Purine salvage cluster
fig|6666666.229902.peg.1783 CDS CP003099.1 1719453 1718599 -3 - 855 FIG000506: Predicted P-loop-containing kinase - none -
fig|6666666.229902.peg.1784 CDS CP003099.1 1720002 1719481 -3 - 522 PTS IIA-like nitrogen-regulatory protein PtsN - none -
fig|6666666.229902.peg.1785 CDS CP003099.1 1720731 1720006 -3 - 726 Lipopolysaccharide ABC transporter, ATP-binding protein LptB KDO2-Lipid A biosynthesis;
Lipopolysaccharide assembly
fig|6666666.229902.peg.1786 CDS CP003099.1 1721255 1720737 -2 - 519 LptA, protein essential for LPS transport across the periplasm KDO2-Lipid A biosynthesis;
Lipopolysaccharide assembly
fig|6666666.229902.peg.1787 CDS CP003099.1 1721811 1721236 -3 - 576 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters Lipopolysaccharide assembly
fig|6666666.229902.peg.1788 CDS CP003099.1 1722095 1722892 2 + 798 Uncharacterized ABC transporter, ATP-binding protein YrbF CBSS-12149.1.peg.3301;
Lipopolysaccharide assembly
fig|6666666.229902.peg.1789 CDS CP003099.1 1722886 1723671 1 + 786 Uncharacterized ABC transporter, permease component YrbE CBSS-12149.1.peg.3301;
Lipopolysaccharide assembly
fig|6666666.229902.peg.1790 CDS CP003099.1 1723694 1724203 2 + 510 Uncharacterized ABC transporter, periplasmic component YrbD CBSS-12149.1.peg.3301;
Lipopolysaccharide assembly
fig|6666666.229902.peg.1791 CDS CP003099.1 1724232 1724873 3 + 642 Uncharacterized ABC transporter, auxiliary component YrbC CBSS-12149.1.peg.3301;
Lipopolysaccharide assembly
fig|6666666.229902.peg.1792 CDS CP003099.1 1724967 1725236 3 + 270 Uncharacterized protein YrbB CBSS-12149.1.peg.3301
fig|6666666.229902.peg.1793 CDS CP003099.1 1725236 1725493 2 + 258 YrbA protein Broadly distributed proteins not in subsystems;
CBSS-12149.1.peg.3301
fig|6666666.229902.peg.1794 CDS CP003099.1 1725510 1726781 3 + 1272 UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7) CBSS-12149.1.peg.3301;
Peptidoglycan Biosynthesis;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229902.peg.1795 CDS CP003099.1 1727532 1728479 3 + 948 Putative secretion ATPase - none -
fig|6666666.229902.peg.1796 CDS CP003099.1 1730675 1730385 -2 - 291 FIG00696346: hypothetical protein - none -
fig|6666666.229902.peg.1797 CDS CP003099.1 1730878 1732308 1 + 1431 Long-chain fatty acid transport protein - none -
fig|6666666.229902.peg.1798 CDS CP003099.1 1732385 1732924 2 + 540 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) DNA repair, bacterial
fig|6666666.229902.peg.1799 CDS CP003099.1 1732921 1733589 1 + 669 DNA mismatch repair endonuclease MutH DNA repair, bacterial
fig|6666666.229902.peg.1800 CDS CP003099.1 1733654 1734379 2 + 726 Integral membrane protein TerC - none -
fig|6666666.229902.peg.1801 CDS CP003099.1 1734671 1734844 2 + 174 hypothetical protein - none -
fig|6666666.229902.peg.1802 CDS CP003099.1 1734841 1735200 1 + 360 Mobile element protein - none -
fig|6666666.229902.peg.1803 CDS CP003099.1 1735241 1735648 2 + 408 Mobile element protein - none -
fig|6666666.229902.peg.1804 CDS CP003099.1 1737030 1735744 -3 - 1287 Glutamine synthetase type I (EC 6.3.1.2) Ammonia assimilation;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Glutamine synthetases;
Peptidoglycan Biosynthesis
fig|6666666.229902.peg.1805 CDS CP003099.1 1737155 1737030 -2 - 126 Glutamine synthetase type I (EC 6.3.1.2) Ammonia assimilation;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Glutamine synthetases;
Peptidoglycan Biosynthesis
fig|6666666.229902.peg.1806 CDS CP003099.1 1737318 1737202 -3 - 117 hypothetical protein - none -
fig|6666666.229902.peg.1807 CDS CP003099.1 1737542 1739395 2 + 1854 GTP-binding protein TypA/BipA Universal GTPases
fig|6666666.229902.peg.1808 CDS CP003099.1 1739505 1739392 -3 - 114 hypothetical protein - none -
fig|6666666.229902.peg.1809 CDS CP003099.1 1739620 1740624 1 + 1005 TolA protein Ton and Tol transport systems
fig|6666666.229902.peg.1810 CDS CP003099.1 1740726 1742009 3 + 1284 Immunoglobulin A1 protease / autotransporter domain, T5aSS type secretion Autotransporter proteins;
Autotransporter proteins
fig|6666666.229902.peg.1811 CDS CP003099.1 1742279 1742073 -2 - 207 Thiol peroxidase, Bcp-type (EC 1.11.1.15) CBSS-316057.3.peg.3521;
Thioredoxin-disulfide reductase
fig|6666666.229902.peg.1812 CDS CP003099.1 1742440 1742303 -1 - 138 Thiol peroxidase, Bcp-type (EC 1.11.1.15) CBSS-316057.3.peg.3521;
Thioredoxin-disulfide reductase
fig|6666666.229902.peg.1813 CDS CP003099.1 1742538 1742413 -3 - 126 Thiol peroxidase, Bcp-type (EC 1.11.1.15) CBSS-316057.3.peg.3521;
Thioredoxin-disulfide reductase
fig|6666666.229902.peg.1814 CDS CP003099.1 1742695 1743588 1 + 894 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229902.peg.1815 CDS CP003099.1 1743702 1744406 3 + 705 Outer membrane protein NlpB, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and YfgL); Lipoprotein-34 precursor Lipopolysaccharide assembly
fig|6666666.229902.peg.1816 CDS CP003099.1 1744537 1744695 1 + 159 Outer membrane protein NlpB, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and YfgL); Lipoprotein-34 precursor Lipopolysaccharide assembly
fig|6666666.229902.peg.1817 CDS CP003099.1 1744830 1746341 3 + 1512 L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1) / Osmotic adaptation Choline and Betaine Uptake and Betaine Biosynthesis
fig|6666666.229902.peg.1818 CDS CP003099.1 1746656 1747492 2 + 837 L-proline glycine betaine ABC transport system permease protein ProV (TC 3.A.1.12.1) Choline and Betaine Uptake and Betaine Biosynthesis
fig|6666666.229902.peg.1819 CDS CP003099.1 1748240 1747545 -2 - 696 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC A Hypothetical Protein Related to Proline Metabolism;
CBSS-630.2.peg.3360
fig|6666666.229902.peg.1820 CDS CP003099.1 1749621 1748233 -3 - 1389 Nicotinamide phosphoribosyltransferase (EC 2.4.2.12) NAD and NADP cofactor biosynthesis global
fig|6666666.229902.peg.1821 CDS CP003099.1 1749760 1749900 1 + 141 hypothetical protein - none -
fig|6666666.229902.peg.1822 CDS CP003099.1 1749981 1752026 3 + 2046 Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) CBSS-216591.1.peg.168;
Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch;
Methionine Biosynthesis;
Threonine and Homoserine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229902.peg.1823 CDS CP003099.1 1752061 1752429 1 + 369 Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) CBSS-216591.1.peg.168;
Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch;
Methionine Biosynthesis;
Threonine and Homoserine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229902.peg.1824 CDS CP003099.1 1752442 1753386 1 + 945 Homoserine kinase (EC 2.7.1.39) CBSS-269482.1.peg.1294;
Methionine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229902.peg.1825 CDS CP003099.1 1753414 1753854 1 + 441 hypothetical protein - none -
fig|6666666.229902.peg.1826 CDS CP003099.1 1753910 1755184 2 + 1275 Threonine synthase (EC 4.2.3.1) Threonine and Homoserine Biosynthesis
fig|6666666.229902.peg.1827 CDS CP003099.1 1755219 1755962 3 + 744 4@1-phosphopantetheinyl transferase (EC 2.7.8.-) Fatty Acid Biosynthesis FASII
fig|6666666.229902.peg.1828 CDS CP003099.1 1756283 1756152 -2 - 132 hypothetical protein - none -
fig|6666666.229902.peg.1829 CDS CP003099.1 1756245 1757312 3 + 1068 HflK protein Hfl operon;
Scaffold proteins for [4Fe-4S] cluster assembly (MRP family)
fig|6666666.229902.peg.1830 CDS CP003099.1 1757312 1758199 2 + 888 HflC protein Hfl operon;
Scaffold proteins for [4Fe-4S] cluster assembly (MRP family)
fig|6666666.229902.peg.1831 CDS CP003099.1 1758488 1758333 -2 - 156 hypothetical protein - none -
fig|6666666.229902.peg.1832 CDS CP003099.1 1758490 1758819 1 + 330 DNA uptake protein and related DNA-binding proteins - none -
fig|6666666.229902.peg.1833 CDS CP003099.1 1758845 1759525 2 + 681 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) Heat shock dnaK gene cluster extended;
Housecleaning nucleoside triphosphate pyrophosphatases
fig|6666666.229902.peg.1834 CDS CP003099.1 1759564 1759887 1 + 324 PlcB, ORFX, ORFP, ORFB, ORFA, ldh gene - none -
fig|6666666.229902.peg.1835 CDS CP003099.1 1759887 1761056 3 + 1170 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB CBSS-630.2.peg.3360;
Heat shock dnaK gene cluster extended;
Heme and Siroheme Biosynthesis;
Queuosine-Archaeosine Biosynthesis
fig|6666666.229902.peg.1836 CDS CP003099.1 1761155 1761811 2 + 657 Ribose 5-phosphate isomerase A (EC 5.3.1.6) D-ribose utilization;
Pentose phosphate pathway
fig|6666666.229902.peg.1837 CDS CP003099.1 1761830 1763062 2 + 1233 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) Glycine and Serine Utilization;
Pyridoxin (Vitamin B6) Biosynthesis;
Serine Biosynthesis
fig|6666666.229902.peg.1838 CDS CP003099.1 1763071 1763190 1 + 120 hypothetical protein - none -
fig|6666666.229902.peg.1839 CDS CP003099.1 1763372 1764418 2 + 1047 iron chelatin ABC transporter periplasmic-binding protein - none -
fig|6666666.229902.peg.1840 CDS CP003099.1 1765145 1764504 -2 - 642 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) D-Galacturonate and D-Glucuronate Utilization;
Entner-Doudoroff Pathway
fig|6666666.229902.peg.1841 CDS CP003099.1 1766557 1765154 -1 - 1404 Uronate isomerase (EC 5.3.1.12) D-Galacturonate and D-Glucuronate Utilization
fig|6666666.229902.peg.1842 CDS CP003099.1 1767412 1766567 -1 - 846 D-mannonate oxidoreductase (EC 1.1.1.57) D-Galacturonate and D-Glucuronate Utilization
fig|6666666.229902.peg.1843 CDS CP003099.1 1768368 1767424 -3 - 945 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) D-Galacturonate and D-Glucuronate Utilization;
D-gluconate and ketogluconates metabolism;
Entner-Doudoroff Pathway
fig|6666666.229902.peg.1844 CDS CP003099.1 1769415 1768423 -3 - 993 TRAP-type C4-dicarboxylate transport system, periplasmic component TRAP Transporter collection
fig|6666666.229902.peg.1845 CDS CP003099.1 1770128 1771429 2 + 1302 TRAP-type C4-dicarboxylate transport system, large permease component TRAP Transporter collection
fig|6666666.229902.peg.1846 CDS CP003099.1 1771453 1773648 1 + 2196 Alpha-glucosidase (EC 3.2.1.20) D-Galacturonate and D-Glucuronate Utilization;
Maltose and Maltodextrin Utilization
fig|6666666.229902.peg.1847 CDS CP003099.1 1773842 1774597 2 + 756 Hexuronate utilization operon transcriptional repressor ExuR D-Galacturonate and D-Glucuronate Utilization
fig|6666666.229902.peg.1848 CDS CP003099.1 1774617 1775801 3 + 1185 Mannonate dehydratase (EC 4.2.1.8) D-Galacturonate and D-Glucuronate Utilization
fig|6666666.229902.peg.1849 CDS CP003099.1 1775994 1776128 3 + 135 hypothetical protein - none -
fig|6666666.229902.peg.1850 CDS CP003099.1 1776148 1776393 1 + 246 hypothetical protein - none -
fig|6666666.229902.peg.1851 CDS CP003099.1 1779489 1777735 -3 - 1755 Putative sulfate permease - none -
fig|6666666.229902.peg.1852 CDS CP003099.1 1779921 1782338 3 + 2418 ATP-dependent protease La (EC 3.4.21.53) Type I Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229902.peg.1853 CDS CP003099.1 1784250 1782400 -3 - 1851 RNA polymerase sigma factor RpoD CBSS-349161.4.peg.2417;
Macromolecular synthesis operon;
Transcription initiation, bacterial sigma factors
fig|6666666.229902.peg.1854 CDS CP003099.1 1786083 1784326 -3 - 1758 DNA primase (EC 2.7.7.-) CBSS-349161.4.peg.2417;
Macromolecular synthesis operon
fig|6666666.229902.peg.1855 CDS CP003099.1 1786420 1786205 -1 - 216 SSU ribosomal protein S21p Macromolecular synthesis operon
fig|6666666.229902.peg.1856 CDS CP003099.1 1786455 1786622 3 + 168 hypothetical protein - none -
fig|6666666.229902.peg.1857 CDS CP003099.1 1786645 1787673 1 + 1029 TsaD/Kae1/Qri7 protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Macromolecular synthesis operon;
YgjD and YeaZ;
YrdC-YciO-Sua5 protein family
fig|6666666.229902.peg.1858 CDS CP003099.1 1787738 1787971 2 + 234 unknown - none -
fig|6666666.229902.peg.1859 CDS CP003099.1 1787974 1788552 1 + 579 Thymidine kinase (EC 2.7.1.21) pyrimidine conversions
fig|6666666.229902.peg.1860 CDS CP003099.1 1790632 1788620 -1 - 2013 DNA ligase (EC 6.5.1.2) DNA Repair Base Excision
fig|6666666.229902.peg.1861 CDS CP003099.1 1791771 1790734 -3 - 1038 Cell division protein ZipA Bacterial Cytoskeleton
fig|6666666.229902.peg.1862 CDS CP003099.1 1791911 1792735 2 + 825 Sulfate transporter, CysZ-type Cysteine Biosynthesis
fig|6666666.229902.peg.1863 CDS CP003099.1 1792836 1793783 3 + 948 Cysteine synthase (EC 2.5.1.47) Cysteine Biosynthesis;
Methionine Biosynthesis
fig|6666666.229902.peg.1864 CDS CP003099.1 1793861 1793748 -2 - 114 hypothetical protein - none -
fig|6666666.229902.peg.1865 CDS CP003099.1 1794149 1794003 -2 - 147 hypothetical protein - none -
fig|6666666.229902.peg.1866 CDS CP003099.1 1794802 1794221 -1 - 582 Hypothetical protein VC0266 (sugar utilization related?) VC0266
fig|6666666.229902.peg.1867 CDS CP003099.1 1796202 1795111 -3 - 1092 GTP-binding and nucleic acid-binding protein YchF Universal GTPases
fig|6666666.229902.peg.1868 CDS CP003099.1 1797074 1796391 -2 - 684 Peptidyl-tRNA hydrolase (EC 3.1.1.29) Cell division-ribosomal stress proteins cluster;
Sporulation-associated proteins with broader functions;
Transcription repair cluster;
Translation termination factors bacterial
fig|6666666.229902.peg.1869 CDS CP003099.1 1797440 1797982 2 + 543 Mobile element protein - none -
fig|6666666.229902.peg.1871 CDS CP003099.1 1805614 1804541 -1 - 1074 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) - none -
fig|6666666.229902.peg.1872 CDS CP003099.1 1805743 1807026 1 + 1284 Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8) CBSS-196164.1.peg.461;
Heme and Siroheme Biosynthesis
fig|6666666.229902.peg.1873 CDS CP003099.1 1809692 1807179 -2 - 2514 [Protein-PII] uridylyltransferase (EC 2.7.7.59) Ammonia assimilation;
CBSS-312309.3.peg.1965
fig|6666666.229902.peg.1874 CDS CP003099.1 1810558 1809758 -1 - 801 Methionine aminopeptidase (EC 3.4.11.18) CBSS-312309.3.peg.1965;
Translation termination factors bacterial
fig|6666666.229902.peg.1875 CDS CP003099.1 1810692 1811033 3 + 342 probable iron binding protein from the HesB_IscA_SufA family - none -
fig|6666666.229902.peg.1876 CDS CP003099.1 1811035 1811250 1 + 216 hypothetical protein - none -
fig|6666666.229902.peg.1877 CDS CP003099.1 1811296 1813689 1 + 2394 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) DNA uptake cluster;
Peptidoglycan Biosynthesis;
Type IV pilus
fig|6666666.229902.peg.1878 CDS CP003099.1 1813988 1815895 2 + 1908 High-affinity Fe2+/Pb2+ permease precursor Iron transport system including ABC transporter
fig|6666666.229902.peg.1879 CDS CP003099.1 1815938 1816459 2 + 522 Periplasmic protein p19 involved in high-affinity Fe2+ transport Iron transport system including ABC transporter
fig|6666666.229902.peg.1880 CDS CP003099.1 1816597 1818027 1 + 1431 Fe2+ ABC transporter, substrate binding protein Iron transport system including ABC transporter
fig|6666666.229902.peg.1881 CDS CP003099.1 1818030 1819355 3 + 1326 Cell division protein FtsX Bacterial Cell Division
fig|6666666.229902.peg.1882 CDS CP003099.1 1819366 1820481 1 + 1116 Cell division protein FtsX Bacterial Cell Division
fig|6666666.229902.peg.1883 CDS CP003099.1 1820483 1821154 2 + 672 Fe2+ ABC transporter, ATP-binding subunit Iron transport system including ABC transporter
fig|6666666.229902.peg.1884 CDS CP003099.1 1821144 1821635 3 + 492 Possible periplasmic thiredoxin Iron transport system including ABC transporter
fig|6666666.229902.peg.1885 CDS CP003099.1 1821642 1821953 3 + 312 Cytochrome C553 (soluble cytochrome f) Iron transport system including ABC transporter;
Soluble cytochromes and functionally related electron carriers
fig|6666666.229902.peg.1886 CDS CP003099.1 1822042 1822164 1 + 123 hypothetical protein - none -
fig|6666666.229902.peg.1887 CDS CP003099.1 1822281 1822946 3 + 666 Phosphoglycolate phosphatase (EC 3.1.3.18) 2-phosphoglycolate salvage;
Glycolate, glyoxylate interconversions
fig|6666666.229902.peg.1888 CDS CP003099.1 1823110 1822952 -1 - 159 hypothetical protein - none -
fig|6666666.229902.peg.1889 CDS CP003099.1 1824286 1823138 -1 - 1149 Mobile element protein - none -
fig|6666666.229902.peg.1890 CDS CP003099.1 1825696 1824695 -1 - 1002 Related to membrane proteins - none -
fig|6666666.229902.peg.1891 CDS CP003099.1 1829795 1825746 -2 - 4050 HrpA-like helicases - none -
fig|6666666.229902.peg.1892 CDS CP003099.1 1830181 1829792 -1 - 390 COG2363 - none -
fig|6666666.229902.peg.1893 CDS CP003099.1 1830634 1830182 -1 - 453 putative membrane protein - none -
fig|6666666.229902.peg.1894 CDS CP003099.1 1830636 1830749 3 + 114 hypothetical protein - none -
fig|6666666.229902.peg.1895 CDS CP003099.1 1831088 1830759 -2 - 330 Glutaredoxin-related protein Glutaredoxins
fig|6666666.229902.peg.1896 CDS CP003099.1 1832470 1831430 -1 - 1041 Outer membrane protein A precursor Osmoregulation
fig|6666666.229902.peg.1897 CDS CP003099.1 1832955 1834916 3 + 1962 Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD Glycolate, glyoxylate interconversions
fig|6666666.229902.peg.1898 CDS CP003099.1 1834913 1836007 2 + 1095 Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD Glycolate, glyoxylate interconversions
fig|6666666.229902.peg.1899 CDS CP003099.1 1836017 1836439 2 + 423 FIG017415: ydiI hotdog fold superfamily - none -
fig|6666666.229902.peg.1900 CDS CP003099.1 1836432 1837496 3 + 1065 Ferrochelatase, protoheme ferro-lyase (EC 4.99.1.1) Heme and Siroheme Biosynthesis
fig|6666666.229902.peg.1901 CDS CP003099.1 1837537 1838037 1 + 501 Thiol peroxidase, Tpx-type (EC 1.11.1.15) Thioredoxin-disulfide reductase
fig|6666666.229902.peg.1902 CDS CP003099.1 1839387 1838242 -3 - 1146 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism
fig|6666666.229902.peg.1903 CDS CP003099.1 1839835 1839443 -1 - 393 Glucosamine-6-phosphate deaminase (EC 3.5.99.6) Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism
fig|6666666.229902.peg.1904 CDS CP003099.1 1840245 1839787 -3 - 459 Glucosamine-6-phosphate deaminase (EC 3.5.99.6) Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism
fig|6666666.229902.peg.1905 CDS CP003099.1 1841278 1840400 -1 - 879 N-acetylneuraminate lyase (EC 4.1.3.3) Sialic Acid Metabolism
fig|6666666.229902.peg.1906 CDS CP003099.1 1842157 1841288 -1 - 870 Sialic acid utilization regulator, RpiR family Sialic Acid Metabolism
fig|6666666.229902.peg.1907 CDS CP003099.1 1843054 1842167 -1 - 888 N-acetylmannosamine kinase (EC 2.7.1.60) Sialic Acid Metabolism
fig|6666666.229902.peg.1908 CDS CP003099.1 1843769 1843068 -2 - 702 N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9) Sialic Acid Metabolism
fig|6666666.229902.peg.1909 CDS CP003099.1 1844010 1844996 3 + 987 TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein Sialic Acid Metabolism
fig|6666666.229902.peg.1910 CDS CP003099.1 1845060 1846910 3 + 1851 TRAP-type transport system, large permease component, predicted N-acetylneuraminate transporter / TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229902.peg.1911 CDS CP003099.1 1847049 1848179 3 + 1131 Sialic acid-induced transmembrane protein YjhT(NanM), possible mutarotase Sialic Acid Metabolism
fig|6666666.229902.peg.1912 CDS CP003099.1 1848428 1849894 2 + 1467 PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69) Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism;
Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229902.peg.1913 CDS CP003099.1 1851639 1850569 -3 - 1071 Outer membrane protein A precursor Osmoregulation
fig|6666666.229902.peg.1914 CDS CP003099.1 1853903 1851861 -2 - 2043 Excinuclease ABC subunit B DNA repair, UvrABC system
fig|6666666.229902.peg.1915 CDS CP003099.1 1855546 1854515 -1 - 1032 putative membrane protein - none -
fig|6666666.229902.peg.1916 CDS CP003099.1 1856226 1855561 -3 - 666 putative exported protein - none -
fig|6666666.229902.peg.1917 CDS CP003099.1 1856561 1858273 2 + 1713 ABC transporter ATP-binding protein - none -
fig|6666666.229902.peg.1918 CDS CP003099.1 1859264 1858377 -2 - 888 putative adhesin/invasin - none -
fig|6666666.229902.peg.1919 CDS CP003099.1 1859767 1861665 1 + 1899 Topoisomerase IV subunit B (EC 5.99.1.-) DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.229902.peg.1920 CDS CP003099.1 1862072 1862248 2 + 177 hypothetical protein - none -
fig|6666666.229902.peg.1921 CDS CP003099.1 1862256 1863713 3 + 1458 Topoisomerase IV subunit A (EC 5.99.1.-) DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.229902.peg.1922 CDS CP003099.1 1863713 1864510 2 + 798 Topoisomerase IV subunit A (EC 5.99.1.-) DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.229902.peg.1923 CDS CP003099.1 1864794 1865399 3 + 606 Glutathione S-transferase (EC 2.5.1.18) Glutathione: Non-redox reactions
fig|6666666.229902.peg.1924 CDS CP003099.1 1866165 1865455 -3 - 711 hypothetical protein - none -
fig|6666666.229902.peg.1925 CDS CP003099.1 1866848 1866171 -2 - 678 FIG00904286: hypothetical protein - none -
fig|6666666.229902.peg.1926 CDS CP003099.1 1866989 1867342 2 + 354 Bona fide RidA/YjgF/TdcF/RutC subgroup - none -
fig|6666666.229902.peg.1927 CDS CP003099.1 1868154 1867384 -3 - 771 hypothetical protein - none -
fig|6666666.229902.peg.1928 CDS CP003099.1 1868929 1868249 -1 - 681 hypothetical protein - none -
fig|6666666.229902.peg.1929 CDS CP003099.1 1869885 1868932 -3 - 954 Glycosyltransferase - none -
fig|6666666.229902.peg.1930 CDS CP003099.1 1870917 1870027 -3 - 891 hypothetical protein - none -
fig|6666666.229902.peg.1931 CDS CP003099.1 1871606 1870920 -2 - 687 DNA polymerase III subunits gamma and tau (EC 2.7.7.7) DNA processing cluster
fig|6666666.229902.peg.1932 CDS CP003099.1 1872966 1871569 -3 - 1398 DNA polymerase III subunits gamma and tau (EC 2.7.7.7) DNA processing cluster
fig|6666666.229902.peg.1933 CDS CP003099.1 1873610 1872999 -2 - 612 Adenine phosphoribosyltransferase (EC 2.4.2.7) Purine conversions;
cAMP signaling in bacteria
fig|6666666.229902.peg.1934 CDS CP003099.1 1874588 1873632 -2 - 957 Lipid A biosynthesis (KDO) 2-(lauroyl)-lipid IVA acyltransferase (EC 2.3.1.-) KDO2-Lipid A biosynthesis
fig|6666666.229902.peg.1935 CDS CP003099.1 1875470 1874703 -2 - 768 Putative membrane protein YfcA - none -
fig|6666666.229902.peg.1936 CDS CP003099.1 1876346 1875474 -2 - 873 Murein endopeptidase - none -
fig|6666666.229902.peg.1937 CDS CP003099.1 1877441 1876368 -2 - 1074 Chorismate synthase (EC 4.2.3.5) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229902.peg.1938 CDS CP003099.1 1880786 1877463 -2 - 3324 Potassium efflux system KefA protein / Small-conductance mechanosensitive channel Potassium homeostasis
fig|6666666.229902.peg.1939 CDS CP003099.1 1882210 1880795 -1 - 1416 O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229902.peg.1940 CDS CP003099.1 1882833 1882216 -3 - 618 SeqA protein, negative modulator of initiation of replication - none -
fig|6666666.229902.peg.1941 CDS CP003099.1 1882920 1883720 3 + 801 Esterase ybfF (EC 3.1.-.-) - none -
fig|6666666.229902.peg.1942 CDS CP003099.1 1884140 1884664 2 + 525 Flavodoxin 1 Flavodoxin
fig|6666666.229902.peg.1943 CDS CP003099.1 1884683 1885174 2 + 492 Ferric uptake regulation protein FUR Bacterial RNA-metabolizing Zn-dependent hydrolases;
Oxidative stress
fig|6666666.229902.peg.1944 CDS CP003099.1 1885290 1887953 3 + 2664 DNA gyrase subunit A (EC 5.99.1.3) Cell Division Subsystem including YidCD;
DNA gyrase subunits;
DNA replication cluster 1;
DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.229902.peg.1945 CDS CP003099.1 1888021 1888371 1 + 351 FIG00782386: hypothetical protein - none -
fig|6666666.229902.peg.1946 CDS CP003099.1 1888722 1888405 -3 - 318 Translation initiation factor SUI1-related protein Translation initiation factors bacterial
fig|6666666.229902.peg.1947 CDS CP003099.1 1889420 1888728 -2 - 693 Orotidine 5@1-phosphate decarboxylase (EC 4.1.1.23) De Novo Pyrimidine Synthesis;
Riboflavin synthesis cluster
fig|6666666.229902.peg.1948 CDS CP003099.1 1890640 1889450 -1 - 1191 Heat shock (predicted periplasmic) protein YciM, precursor Osmotic stress cluster
fig|6666666.229902.peg.1949 CDS CP003099.1 1890921 1890640 -3 - 282 Inner membrane protein yciS - none -
fig|6666666.229902.peg.1950 CDS CP003099.1 1891323 1891036 -3 - 288 Integration host factor beta subunit DNA structural proteins, bacterial
fig|6666666.229902.peg.1951 CDS CP003099.1 1893031 1891385 -1 - 1647 SSU ribosomal protein S1p Cell division-ribosomal stress proteins cluster
fig|6666666.229902.peg.1952 CDS CP003099.1 1893806 1893129 -2 - 678 Cytidylate kinase (EC 2.7.4.25) pyrimidine conversions
fig|6666666.229902.peg.1953 CDS CP003099.1 1894683 1893799 -3 - 885 Membrane protein LAPB - none -
fig|6666666.229902.peg.1954 CDS CP003099.1 1894985 1897351 2 + 2367 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229902.peg.1955 CDS CP003099.1 1897429 1900203 1 + 2775 Probable zinc protease pqqL (EC 3.4.99.-) - none -
fig|6666666.229902.peg.1956 CDS CP003099.1 1900601 1900269 -2 - 333 Branched-chain amino acid transport protein azlD - none -
fig|6666666.229902.peg.1957 CDS CP003099.1 1901330 1900602 -2 - 729 Branched-chain amino acid transport protein AzlC - none -
fig|6666666.229902.peg.1958 CDS CP003099.1 1902267 1901335 -3 - 933 Transcriptional activator MetR LysR-family proteins in Escherichia coli;
LysR-family proteins in Salmonella enterica Typhimurium;
Methionine Biosynthesis
fig|6666666.229902.peg.1959 CDS CP003099.1 1902567 1904840 3 + 2274 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) Methionine Biosynthesis
fig|6666666.229902.peg.1960 CDS CP003099.1 1905801 1905133 -3 - 669 Superfamily II DNA/RNA helicases, SNF2 family - none -
fig|6666666.229902.peg.1961 CDS CP003099.1 1906524 1905820 -3 - 705 helicase (Snf2/Rad54 family) - none -
fig|6666666.229902.peg.1962 CDS CP003099.1 1908043 1906694 -1 - 1350 Type III restriction-modification system methylation subunit (EC 2.1.1.72) Restriction-Modification System
fig|6666666.229902.peg.1963 CDS CP003099.1 1908319 1908140 -1 - 180 CRISPR-associated helicase Cas3 CRISPRs
fig|6666666.229902.peg.1964 CDS CP003099.1 1908714 1908860 3 + 147 hypothetical protein - none -
fig|6666666.229902.peg.1965 CDS CP003099.1 1908871 1909533 1 + 663 Putative TEGT family carrier/transport protein CBSS-326442.4.peg.1852
fig|6666666.229902.peg.1966 CDS CP003099.1 1909553 1909948 2 + 396 tRNA 2-thiouridine synthesizing protein E (EC 2.8.1.-) CBSS-326442.4.peg.1852;
Lipoic acid synthesis cluster;
Sulfite reduction-associated complex DsrMKJOP and co-clustering genes
fig|6666666.229902.peg.1967 CDS CP003099.1 1910047 1910928 1 + 882 Manganese ABC transporter, periplasmic-binding protein SitA - none -
fig|6666666.229902.peg.1968 CDS CP003099.1 1910928 1911818 3 + 891 Manganese ABC transporter, ATP-binding protein SitB - none -
fig|6666666.229902.peg.1969 CDS CP003099.1 1911818 1912675 2 + 858 Manganese ABC transporter, inner membrane permease protein SitC - none -
fig|6666666.229902.peg.1970 CDS CP003099.1 1912672 1913520 1 + 849 Manganese ABC transporter, inner membrane permease protein SitD - none -
fig|6666666.229902.peg.1971 CDS CP003099.1 1913767 1913495 -1 - 273 Acylphosphate phosphohydrolase (EC 3.6.1.7), putative Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229902.peg.1972 CDS CP003099.1 1913912 1914586 2 + 675 UPF0319 protein YccT precursor CBSS-83333.1.peg.946
fig|6666666.229902.peg.1973 CDS CP003099.1 1914649 1914822 1 + 174 Methylglyoxal synthase (EC 4.2.3.3) CBSS-83333.1.peg.946;
Methylglyoxal Metabolism
fig|6666666.229902.peg.1974 CDS CP003099.1 1914923 1915036 2 + 114 Methylglyoxal synthase (EC 4.2.3.3) CBSS-83333.1.peg.946;
Methylglyoxal Metabolism
fig|6666666.229902.peg.1975 CDS CP003099.1 1915097 1915570 2 + 474 Inner membrane protein YccF CBSS-83333.1.peg.946
fig|6666666.229902.peg.1976 CDS CP003099.1 1915579 1917720 1 + 2142 Putative efflux (PET) family inner membrane protein YccS CBSS-83333.1.peg.946
fig|6666666.229902.peg.1977 CDS CP003099.1 1918223 1917717 -2 - 507 FIG001674: hypothetical protein - none -
fig|6666666.229902.peg.1978 CDS CP003099.1 1918286 1919236 2 + 951 Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p YrdC-YciO-Sua5 protein family
fig|6666666.229902.peg.1979 CDS CP003099.1 1920347 1919403 -2 - 945 Transketolase, C-terminal section (EC 2.2.1.1) Pentose phosphate pathway
fig|6666666.229902.peg.1980 CDS CP003099.1 1921161 1920337 -3 - 825 Transketolase, N-terminal section (EC 2.2.1.1) Pentose phosphate pathway
fig|6666666.229902.peg.1981 CDS CP003099.1 1922015 1921167 -2 - 849 FIG00732228: membrane protein - none -
fig|6666666.229902.peg.1982 CDS CP003099.1 1922379 1921996 -3 - 384 FIG00732228: membrane protein - none -
fig|6666666.229902.peg.1983 CDS CP003099.1 1922525 1922388 -2 - 138 FIG00732228: membrane protein - none -
fig|6666666.229902.peg.1984 CDS CP003099.1 1922811 1922542 -3 - 270 Putative sugar phosphotransferase component II B - none -
fig|6666666.229902.peg.1985 CDS CP003099.1 1923974 1923042 -2 - 933 FIG00781545: hypothetical protein - none -
fig|6666666.229902.peg.1986 CDS CP003099.1 1926242 1924242 -2 - 2001 ABC transporter ATP-binding protein - none -
fig|6666666.229902.peg.1987 CDS CP003099.1 1927636 1926284 -1 - 1353 Putative dNTP triphosphohydrolase, associated with nucleotidase YfbR Purine conversions;
dNTP triphosphohydrolase protein family
fig|6666666.229902.peg.1988 CDS CP003099.1 1928330 1927638 -2 - 693 LrgA-associated membrane protein LrgB Murein hydrolase regulation and cell death
fig|6666666.229902.peg.1989 CDS CP003099.1 1928689 1928330 -1 - 360 Antiholin-like protein LrgA Murein hydrolase regulation and cell death
fig|6666666.229902.peg.1990 CDS CP003099.1 1929159 1929659 3 + 501 Micrococcal nuclease (thermonuclease) homologs - none -
fig|6666666.229902.peg.1991 CDS CP003099.1 1929665 1930861 2 + 1197 Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA Alanine biosynthesis;
mnm5U34 biosynthesis bacteria;
tRNA modification Archaea
fig|6666666.229902.peg.1992 CDS CP003099.1 1930858 1931238 1 + 381 Cysteine desulfurase CsdA-CsdE, sulfur acceptor protein CsdE - none -
fig|6666666.229902.peg.1993 CDS CP003099.1 1932712 1931282 -1 - 1431 ADP-heptose synthase (EC 2.7.-.-) / D-glycero-beta-D-manno-heptose 7-phosphate kinase LOS core oligosaccharide biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.229902.peg.1994 CDS CP003099.1 1932826 1933761 1 + 936 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) KDO2-Lipid A biosynthesis
fig|6666666.229902.peg.1995 CDS CP003099.1 1934382 1933819 -3 - 564 Putative oxidoreductase component of anaerobic dehydrogenases; Functional role page for Chaperone protein TorD - none -
fig|6666666.229902.peg.1996 CDS CP003099.1 1934993 1934382 -2 - 612 NAD(P)H oxidoreductase YRKL (EC 1.6.99.-) @ Putative NADPH-quinone reductase (modulator of drug activity B) @ Flavodoxin 2 Flavodoxin;
Flavodoxin
fig|6666666.229902.peg.1997 CDS CP003099.1 1935448 1935002 -1 - 447 Putative activity regulator of membrane protease YbbK - none -
fig|6666666.229902.peg.1998 CDS CP003099.1 1936398 1935472 -3 - 927 Putative stomatin/prohibitin-family membrane protease subunit YbbK - none -
fig|6666666.229902.peg.1999 CDS CP003099.1 1937739 1936981 -3 - 759 probable glucanotransferase (endo alpha-1,4 polygalactosaminidase related protein) - none -
fig|6666666.229902.peg.2000 CDS CP003099.1 1939541 1940923 2 + 1383 Cytochrome c551 peroxidase (EC 1.11.1.5) Protection from Reactive Oxygen Species
fig|6666666.229902.peg.2001 CDS CP003099.1 1942168 1941011 -1 - 1158 Ribonuclease D (EC 3.1.26.3) tRNA processing
fig|6666666.229902.peg.2002 CDS CP003099.1 1943927 1942251 -2 - 1677 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) Biotin biosynthesis;
Biotin synthesis cluster
fig|6666666.229902.peg.2003 CDS CP003099.1 1944527 1943970 -2 - 558 Starvation lipoprotein Slp paralog Carbon Starvation
fig|6666666.229902.peg.2004 CDS CP003099.1 1945281 1944559 -3 - 723 TsaB protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Ribosome biogenesis bacterial;
YgjD and YeaZ;
YjeE;
YrdC-YciO-Sua5 protein family
fig|6666666.229902.peg.2005 CDS CP003099.1 1947221 1945284 -2 - 1938 DinG family ATP-dependent helicase YoaA DNA repair, bacterial DinG and relatives
fig|6666666.229902.peg.2006 CDS CP003099.1 1947297 1948115 3 + 819 Aldose 1-epimerase - none -
fig|6666666.229902.peg.2007 CDS CP003099.1 1948525 1949382 1 + 858 FIG000875: Thioredoxin domain-containing protein EC-YbbN - none -
fig|6666666.229902.peg.2008 CDS CP003099.1 1949442 1950395 3 + 954 Thioredoxin reductase (EC 1.8.1.9) Thioredoxin-disulfide reductase;
pyrimidine conversions
fig|6666666.229902.peg.2009 CDS CP003099.1 1950501 1952264 3 + 1764 Transport ATP-binding protein CydD Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229902.peg.2010 CDS CP003099.1 1952264 1953997 2 + 1734 Transport ATP-binding protein CydC Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229902.peg.2011 CDS CP003099.1 1954261 1955127 1 + 867 Acyl-CoA thioesterase II (EC 3.1.2.-) Acyl-CoA thioesterase II
fig|6666666.229902.peg.2012 CDS CP003099.1 1955418 1955290 -3 - 129 hypothetical protein - none -
fig|6666666.229902.peg.2013 CDS CP003099.1 1956200 1955415 -2 - 786 serine/threonine protein kinase - none -
fig|6666666.229902.peg.2014 CDS CP003099.1 1956781 1956221 -1 - 561 unknown - none -
fig|6666666.229902.peg.2015 CDS CP003099.1 1956943 1957527 1 + 585 Putative lipoprotein yceB precursor - none -
fig|6666666.229902.peg.2016 CDS CP003099.1 1958498 1957584 -2 - 915 ROK family Glucokinase with ambiguous substrate specificity - none -
fig|6666666.229902.peg.2017 CDS CP003099.1 1959217 1958549 -1 - 669 Phosphatidylglycerophosphatase B (EC 3.1.3.27) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Osmotic stress cluster
fig|6666666.229902.peg.2018 CDS CP003099.1 1959366 1960019 3 + 654 GTP cyclohydrolase II (EC 3.5.4.25) Molybdenum cofactor biosynthesis;
Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster
fig|6666666.229902.peg.2019 CDS CP003099.1 1960298 1961038 2 + 741 FIG00698611: hypothetical protein - none -
fig|6666666.229902.peg.2020 CDS CP003099.1 1961703 1961200 -3 - 504 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229902.peg.2021 CDS CP003099.1 1962206 1961664 -2 - 543 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229902.peg.2022 CDS CP003099.1 1963025 1962231 -2 - 795 DNA for glycosyltransferase, lytic transglycosylase, dTDP-4-rhamnose reductase Rhamnose containing glycans
fig|6666666.229902.peg.2023 CDS CP003099.1 1963828 1963025 -1 - 804 Exodeoxyribonuclease III (EC 3.1.11.2) DNA repair, bacterial
fig|6666666.229902.peg.2024 CDS CP003099.1 1964097 1963972 -3 - 126 hypothetical protein - none -
fig|6666666.229902.peg.2025 CDS CP003099.1 1965787 1964369 -1 - 1419 Undecaprenyl-phosphate galactosephosphotransferase (EC 2.7.8.6) - none -
fig|6666666.229902.peg.2026 CDS CP003099.1 1966706 1965750 -2 - 957 O antigen biosynthesis rhamnosyltransferase rfbN (EC 2.4.1.-) - none -
fig|6666666.229902.peg.2027 CDS CP003099.1 1967087 1966716 -2 - 372 Alpha-L-Rha alpha-1,3-L-rhamnosyltransferase (EC 2.4.1.-) Rhamnose containing glycans
fig|6666666.229902.peg.2028 CDS CP003099.1 1967368 1967150 -1 - 219 Alpha-L-Rha alpha-1,3-L-rhamnosyltransferase (EC 2.4.1.-) Rhamnose containing glycans
fig|6666666.229902.peg.2029 CDS CP003099.1 1967583 1967416 -3 - 168 Alpha-L-Rha alpha-1,3-L-rhamnosyltransferase (EC 2.4.1.-) Rhamnose containing glycans
fig|6666666.229902.peg.2030 CDS CP003099.1 1968659 1967955 -2 - 705 Glycosyltransferase involved in cell wall biogenesis (EC 2.4.-.-) - none -
fig|6666666.229902.peg.2031 CDS CP003099.1 1970379 1969039 -3 - 1341 membrane protein, related to Actinobacillus protein (1944168) - none -
fig|6666666.229902.peg.2032 CDS CP003099.1 1970551 1970366 -1 - 186 hypothetical protein - none -
fig|6666666.229902.peg.2033 CDS CP003099.1 1972287 1971031 -3 - 1257 DNA for glycosyltransferase, lytic transglycosylase, dTDP-4-rhamnose reductase Rhamnose containing glycans
fig|6666666.229902.peg.2034 CDS CP003099.1 1973258 1972287 -2 - 972 O antigen biosynthesis rhamnosyltransferase rfbN (EC 2.4.1.-) - none -
fig|6666666.229902.peg.2035 CDS CP003099.1 1973881 1973255 -1 - 627 Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40) Rhamnose containing glycans
fig|6666666.229902.peg.2036 CDS CP003099.1 1974784 1974059 -1 - 726 O-antigen export system permease protein RfbD - none -
fig|6666666.229902.peg.2037 CDS CP003099.1 1975357 1974818 -1 - 540 dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) Capsular heptose biosynthesis;
Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229902.peg.2038 CDS CP003099.1 1976238 1975360 -3 - 879 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229902.peg.2039 CDS CP003099.1 1977015 1976239 -3 - 777 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229902.peg.2040 CDS CP003099.1 1978256 1977189 -2 - 1068 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229902.peg.2041 CDS CP003099.1 1979456 1978326 -2 - 1131 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) Murein Hydrolases;
Peptidoglycan Biosynthesis
fig|6666666.229902.peg.2042 CDS CP003099.1 1980267 1979458 -3 - 810 Glucosyl-3-phosphoglycerate synthase (EC 2.4.1.266) - none -
fig|6666666.229902.peg.2043 CDS CP003099.1 1981217 1980336 -2 - 882 Glycosyltransferase - none -
fig|6666666.229902.peg.2044 CDS CP003099.1 1982410 1981217 -1 - 1194 DNA for glycosyltransferase, lytic transglycosylase, dTDP-4-rhamnose reductase Rhamnose containing glycans
fig|6666666.229902.peg.2045 CDS CP003099.1 1983195 1982419 -3 - 777 Lipopolysaccharide core biosynthesis glycosyltransferase WadA - none -
fig|6666666.229902.peg.2046 CDS CP003099.1 1983326 1984849 2 + 1524 putative flippase - none -
fig|6666666.229902.peg.2047 CDS CP003099.1 1984846 1985802 1 + 957 Polysaccharide polymerization protein - none -
fig|6666666.229902.peg.2048 CDS CP003099.1 1985911 1986162 1 + 252 YefM protein (antitoxin to YoeB) Toxin-antitoxin replicon stabilization systems
fig|6666666.229902.peg.2049 CDS CP003099.1 1986159 1986413 3 + 255 YoeB toxin protein Toxin-antitoxin replicon stabilization systems
fig|6666666.229902.peg.2050 CDS CP003099.1 1986426 1987169 3 + 744 Probable transmembrane protein - none -
fig|6666666.229902.peg.2051 CDS CP003099.1 1987182 1987334 3 + 153 hypothetical protein - none -
fig|6666666.229902.peg.2052 CDS CP003099.1 1987345 1988172 1 + 828 DNA ligase (ATP) (EC 6.5.1.1) DNA ligases
fig|6666666.229902.peg.2053 CDS CP003099.1 1989699 1988305 -3 - 1395 ATP-dependent DNA helicase UvrD/PcrA DNA repair, bacterial UvrD and related helicases
fig|6666666.229902.peg.2054 CDS CP003099.1 1990480 1989686 -1 - 795 ATP-dependent DNA helicase UvrD/PcrA DNA repair, bacterial UvrD and related helicases
fig|6666666.229902.peg.2055 CDS CP003099.1 1991283 1990654 -3 - 630 Low-affinity gluconate/H+ symporter GntU D-gluconate and ketogluconates metabolism
fig|6666666.229902.peg.2056 CDS CP003099.1 1992004 1991276 -1 - 729 Low-affinity gluconate/H+ symporter GntU D-gluconate and ketogluconates metabolism
fig|6666666.229902.peg.2057 CDS CP003099.1 1992222 1992386 3 + 165 Gluconokinase (EC 2.7.1.12) D-gluconate and ketogluconates metabolism;
Entner-Doudoroff Pathway
fig|6666666.229902.peg.2058 CDS CP003099.1 1992361 1992741 1 + 381 Gluconokinase (EC 2.7.1.12) D-gluconate and ketogluconates metabolism;
Entner-Doudoroff Pathway
fig|6666666.229902.peg.2059 CDS CP003099.1 1992860 1992738 -2 - 123 hypothetical protein - none -
fig|6666666.229902.peg.2060 CDS CP003099.1 1993809 1992811 -3 - 999 Gluconate utilization system Gnt-I transcriptional repressor D-gluconate and ketogluconates metabolism
fig|6666666.229902.peg.2061 CDS CP003099.1 1994565 1993858 -3 - 708 Formate dehydrogenase chain D (EC 1.2.1.2) Formate hydrogenase
fig|6666666.229902.peg.2062 CDS CP003099.1 1994902 1998012 1 + 3111 Formate dehydrogenase N alpha subunit (EC 1.2.1.2) @ selenocysteine-containing Formate dehydrogenase;
Formate hydrogenase
fig|6666666.229902.peg.2063 CDS CP003099.1 1998110 1998940 2 + 831 Formate dehydrogenase O beta subunit (EC 1.2.1.2) Formate dehydrogenase;
Formate hydrogenase
fig|6666666.229902.peg.2064 CDS CP003099.1 1998933 1999646 3 + 714 Formate dehydrogenase -O, gamma subunit (EC 1.2.1.2) Anaerobic respiratory reductases;
Formate hydrogenase
fig|6666666.229902.peg.2065 CDS CP003099.1 2002498 2000213 -1 - 2286 [NiFe] hydrogenase metallocenter assembly protein HypF G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229902.peg.2066 CDS CP003099.1 2002794 2003393 3 + 600 Hydrogenase-4 component A - none -
fig|6666666.229902.peg.2067 CDS CP003099.1 2003426 2005447 2 + 2022 Hydrogenase-4 component B (EC 1.-.-.-) / Formate hydrogenlyase subunit 3 Formate hydrogenase;
Formate hydrogenase
fig|6666666.229902.peg.2068 CDS CP003099.1 2005458 2006420 3 + 963 Hydrogenase-4 component C - none -
fig|6666666.229902.peg.2069 CDS CP003099.1 2006433 2007878 3 + 1446 Hydrogenase-4 component D - none -
fig|6666666.229902.peg.2070 CDS CP003099.1 2007889 2008527 1 + 639 Hydrogenase-4 component E (EC 1.-.-.-) Formate hydrogenase
fig|6666666.229902.peg.2071 CDS CP003099.1 2008532 2010070 2 + 1539 Hydrogenase-4 component F - none -
fig|6666666.229902.peg.2072 CDS CP003099.1 2010089 2011819 2 + 1731 Formate hydrogenlyase subunit 5 Formate hydrogenase
fig|6666666.229902.peg.2073 CDS CP003099.1 2011833 2012429 3 + 597 Formate hydrogenlyase complex 3 iron-sulfur protein; Formate hydrogenlyase subunit 6; Ni,Fe-hydrogenase III medium subunit Formate hydrogenase
fig|6666666.229902.peg.2074 CDS CP003099.1 2012477 2013253 2 + 777 Formate hydrogenlyase subunit 7 Formate hydrogenase
fig|6666666.229902.peg.2075 CDS CP003099.1 2013388 2013792 1 + 405 Formate hydrogenlyase transcriptional activator Formate hydrogenase
fig|6666666.229902.peg.2076 CDS CP003099.1 2013782 2014243 2 + 462 Hydrogenase 3 maturation protease (EC 3.4.-.-) - none -
fig|6666666.229902.peg.2077 CDS CP003099.1 2014772 2016994 2 + 2223 Formate dehydrogenase H (EC 1.2.1.2) @ selenocysteine-containing Formate dehydrogenase
fig|6666666.229902.peg.2080 CDS CP003099.1 2018037 2017165 -3 - 873 Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) Serine-glyoxylate cycle;
TCA Cycle
fig|6666666.229902.peg.2081 CDS CP003099.1 2019217 2018048 -1 - 1170 Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) Serine-glyoxylate cycle;
TCA Cycle
fig|6666666.229902.peg.2082 CDS CP003099.1 2019414 2019274 -3 - 141 hypothetical protein - none -
fig|6666666.229902.peg.2083 CDS CP003099.1 2020627 2019404 -1 - 1224 Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61) Dehydrogenase complexes;
TCA Cycle
fig|6666666.229902.peg.2084 CDS CP003099.1 2023560 2020753 -3 - 2808 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) Dehydrogenase complexes;
TCA Cycle
fig|6666666.229902.peg.2085 CDS CP003099.1 2023645 2023767 1 + 123 hypothetical protein - none -
fig|6666666.229902.peg.2086 CDS CP003099.1 2024474 2023836 -2 - 639 Hypothetical metal-binding enzyme, YcbL homolog CBSS-228400.4.peg.1623
fig|6666666.229902.peg.2087 CDS CP003099.1 2025112 2024552 -1 - 561 FIG001587: exported protein CBSS-228400.4.peg.1623
fig|6666666.229902.peg.2088 CDS CP003099.1 2026475 2025177 -2 - 1299 L,D-transpeptidase YcbB CBSS-228400.4.peg.1623
fig|6666666.229902.peg.2089 CDS CP003099.1 2026684 2026436 -1 - 249 L,D-transpeptidase YcbB CBSS-228400.4.peg.1623
fig|6666666.229902.peg.2090 CDS CP003099.1 2028819 2026762 -3 - 2058 Tail-specific protease precursor (EC 3.4.21.102) - none -
fig|6666666.229902.peg.2091 CDS CP003099.1 2029501 2028893 -1 - 609 ProQ: influences osmotic activation of compatible solute ProP - none -
fig|6666666.229902.peg.2092 CDS CP003099.1 2029719 2031002 3 + 1284 Paraquat-inducible protein A Oxidative stress
fig|6666666.229902.peg.2093 CDS CP003099.1 2030965 2033622 1 + 2658 Paraquat-inducible protein B Oxidative stress
fig|6666666.229902.peg.2094 CDS CP003099.1 2033898 2033698 -3 - 201 Tripeptide aminopeptidase (EC 3.4.11.4) - none -
fig|6666666.229902.peg.2095 CDS CP003099.1 2034941 2033871 -2 - 1071 Tripeptide aminopeptidase (EC 3.4.11.4) - none -
fig|6666666.229902.peg.2096 CDS CP003099.1 2035205 2036323 2 + 1119 Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) Polyamine Metabolism
fig|6666666.229902.peg.2097 CDS CP003099.1 2036307 2037167 3 + 861 Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) Polyamine Metabolism
fig|6666666.229902.peg.2098 CDS CP003099.1 2037167 2037940 2 + 774 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) Polyamine Metabolism
fig|6666666.229902.peg.2099 CDS CP003099.1 2038071 2039168 3 + 1098 ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1) Polyamine Metabolism
fig|6666666.229902.peg.2100 CDS CP003099.1 2039290 2040186 1 + 897 Cytidine deaminase (EC 3.5.4.5) Murein hydrolase regulation and cell death;
pyrimidine conversions;
tRNA modification Bacteria
fig|6666666.229902.peg.2101 CDS CP003099.1 2040284 2040171 -2 - 114 hypothetical protein - none -
fig|6666666.229902.peg.2102 CDS CP003099.1 2041581 2040265 -3 - 1317 Seryl-tRNA synthetase (EC 6.1.1.11) CBSS-326442.4.peg.1852;
Glycine and Serine Utilization;
tRNA aminoacylation, Ser
fig|6666666.229902.peg.2103 CDS CP003099.1 2041889 2043556 2 + 1668 C4-dicarboxylate transporter DcuB - none -
fig|6666666.229902.peg.2104 CDS CP003099.1 2043646 2043792 1 + 147 hypothetical protein - none -
fig|6666666.229902.peg.2105 CDS CP003099.1 2045392 2044052 -1 - 1341 FIG065221: Holliday junction DNA helicase CBSS-83333.1.peg.876
fig|6666666.229902.peg.2106 CDS CP003099.1 2046022 2045405 -1 - 618 Outer membrane lipoprotein carrier protein LolA CBSS-83333.1.peg.876;
Lipopolysaccharide assembly;
Lipoprotein sorting system
fig|6666666.229902.peg.2107 CDS CP003099.1 2048859 2046115 -3 - 2745 Cell division protein FtsK Bacterial Cell Division;
Bacterial Cytoskeleton;
Bacterial RNA-metabolizing Zn-dependent hydrolases;
CBSS-83333.1.peg.876
fig|6666666.229902.peg.2108 CDS CP003099.1 2049342 2048863 -3 - 480 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229902.peg.2109 CDS CP003099.1 2051254 2049881 -1 - 1374 DNA repair protein RadA DNA repair, bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229902.peg.2110 CDS CP003099.1 2052411 2051257 -3 - 1155 Adenylate cyclase (EC 4.6.1.1) cAMP signaling in bacteria
fig|6666666.229902.peg.2111 CDS CP003099.1 2052576 2053256 3 + 681 Phosphate transport regulator (distant homolog of PhoU) Phosphate metabolism
fig|6666666.229902.peg.2112 CDS CP003099.1 2053282 2054547 1 + 1266 Probable low-affinity inorganic phosphate transporter Phosphate metabolism
fig|6666666.229902.peg.2113 CDS CP003099.1 2054616 2055227 3 + 612 SH3 domain protein - none -
fig|6666666.229902.peg.2114 CDS CP003099.1 2055227 2056531 2 + 1305 tRNA nucleotidyltransferase (EC 2.7.7.21) (EC 2.7.7.25) Polyadenylation bacterial;
tRNA nucleotidyltransferase
fig|6666666.229902.peg.2115 CDS CP003099.1 2056566 2057189 3 + 624 Outer membrane lipoprotein LolB precursor - none -
fig|6666666.229902.peg.2116 CDS CP003099.1 2057189 2058100 2 + 912 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148) A Gammaproteobacteria Cluster Relating to Translation;
Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.229902.peg.2117 CDS CP003099.1 2058141 2059091 3 + 951 Ribose-phosphate pyrophosphokinase (EC 2.7.6.1) A Gammaproteobacteria Cluster Relating to Translation;
Pentose phosphate pathway;
Transcription repair cluster
fig|6666666.229902.peg.2118 CDS CP003099.1 2059268 2059414 2 + 147 hypothetical protein - none -
fig|6666666.229902.peg.2119 CDS CP003099.1 2059723 2060868 1 + 1146 L-lactate dehydrogenase (EC 1.1.2.3) Lactate utilization;
Respiratory dehydrogenases 1
fig|6666666.229902.peg.2120 CDS CP003099.1 2061111 2062700 3 + 1590 L-lactate permease Lactate utilization
fig|6666666.229902.peg.2121 CDS CP003099.1 2063187 2062855 -3 - 333 UPF0265 protein YeeX Broadly distributed proteins not in subsystems
fig|6666666.229902.peg.2122 CDS CP003099.1 2063212 2063328 1 + 117 hypothetical protein - none -
fig|6666666.229902.peg.2123 CDS CP003099.1 2063387 2064004 2 + 618 Phosphoserine aminotransferase (EC 2.6.1.52) Glycine and Serine Utilization;
Pyridoxin (Vitamin B6) Biosynthesis;
Serine Biosynthesis
fig|6666666.229902.peg.2124 CDS CP003099.1 2064001 2064468 1 + 468 Phosphoserine aminotransferase (EC 2.6.1.52) Glycine and Serine Utilization;
Pyridoxin (Vitamin B6) Biosynthesis;
Serine Biosynthesis
fig|6666666.229902.peg.2125 CDS CP003099.1 2064495 2065640 3 + 1146 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) @ Histidinol-phosphate aminotransferase (EC 2.6.1.9) Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229902.peg.2126 CDS CP003099.1 2065651 2066982 1 + 1332 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229902.peg.2127 CDS CP003099.1 2067537 2067070 -3 - 468 Ribonuclease HI (EC 3.1.26.4) CBSS-228410.1.peg.134;
CBSS-342610.3.peg.1536;
Ribonuclease H
fig|6666666.229902.peg.2128 CDS CP003099.1 2067605 2068366 2 + 762 DNA polymerase III epsilon subunit (EC 2.7.7.7) CBSS-228410.1.peg.134;
CBSS-342610.3.peg.1536
fig|6666666.229902.peg.2129 CDS CP003099.1 2068817 2069071 2 + 255 RelB/StbD replicon stabilization protein (antitoxin to RelE/StbE) Toxin-antitoxin replicon stabilization systems
fig|6666666.229902.peg.2130 CDS CP003099.1 2069061 2069351 3 + 291 RelE/StbE replicon stabilization toxin Toxin-antitoxin replicon stabilization systems
fig|6666666.229902.peg.2131 CDS CP003099.1 2069749 2069408 -1 - 342 conserved hypothetical protein - none -
fig|6666666.229902.peg.2132 CDS CP003099.1 2070177 2070542 3 + 366 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) Ammonia assimilation;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229902.peg.2133 CDS CP003099.1 2070713 2072101 2 + 1389 Putative protease - none -
fig|6666666.229902.peg.2134 CDS CP003099.1 2072398 2073489 1 + 1092 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) CBSS-211586.1.peg.2832;
Queuosine-Archaeosine Biosynthesis;
Scaffold proteins for [4Fe-4S] cluster assembly (MRP family);
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229902.peg.2135 CDS CP003099.1 2073949 2073533 -1 - 417 Periplasmic aromatic amino acid aminotransferase beta precursor (EC 2.6.1.57) Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229902.peg.2136 CDS CP003099.1 2074671 2073991 -3 - 681 Periplasmic aromatic amino acid aminotransferase beta precursor (EC 2.6.1.57) Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229902.peg.2137 CDS CP003099.1 2075144 2076295 2 + 1152 tRNA-guanine transglycosylase (EC 2.4.2.29) CBSS-211586.1.peg.2832;
Queuosine-Archaeosine Biosynthesis;
Scaffold proteins for [4Fe-4S] cluster assembly (MRP family);
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229902.peg.2138 CDS CP003099.1 2076429 2076569 3 + 141 hypothetical protein - none -
fig|6666666.229902.peg.2139 CDS CP003099.1 2076586 2076885 1 + 300 Preprotein translocase subunit YajC (TC 3.A.5.1.1) CBSS-211586.1.peg.2832
fig|6666666.229902.peg.2140 CDS CP003099.1 2076949 2078766 1 + 1818 Protein-export membrane protein SecD (TC 3.A.5.1.1) CBSS-211586.1.peg.2832
fig|6666666.229902.peg.2141 CDS CP003099.1 2078783 2079748 2 + 966 Protein-export membrane protein SecF (TC 3.A.5.1.1) CBSS-211586.1.peg.2832
fig|6666666.229902.peg.2142 CDS CP003099.1 2079968 2082595 2 + 2628 Iron siderophore receptor protein - none -
fig|6666666.229902.peg.2143 CDS CP003099.1 2082842 2082666 -2 - 177 hypothetical protein - none -
fig|6666666.229902.peg.2144 CDS CP003099.1 2082945 2085566 3 + 2622 Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) 5-FCL-like protein;
Butanol Biosynthesis;
Butanol Biosynthesis;
Fermentations: Lactate;
Fermentations: Mixed acid;
Fermentations: Mixed acid;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229902.peg.2145 CDS CP003099.1 2086602 2085649 -3 - 954 Inositol transport system permease protein Inositol catabolism
fig|6666666.229902.peg.2146 CDS CP003099.1 2088158 2086653 -2 - 1506 Inositol transport system ATP-binding protein Inositol catabolism
fig|6666666.229902.peg.2147 CDS CP003099.1 2089159 2088227 -1 - 933 Inositol transport system sugar-binding protein Inositol catabolism
fig|6666666.229902.peg.2148 CDS CP003099.1 2090181 2089243 -3 - 939 Inositol transport system sugar-binding protein Inositol catabolism
fig|6666666.229902.peg.2149 CDS CP003099.1 2091620 2090481 -2 - 1140 Myo-inositol 2-dehydrogenase 2 (EC 1.1.1.18) Inositol catabolism
fig|6666666.229902.peg.2150 CDS CP003099.1 2093219 2091711 -2 - 1509 Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27) Inositol catabolism
fig|6666666.229902.peg.2151 CDS CP003099.1 2094800 2093457 -2 - 1344 putative hexose phosphate transport protein - none -
fig|6666666.229902.peg.2152 CDS CP003099.1 2095621 2094818 -1 - 804 Inositol-1-monophosphatase (EC 3.1.3.25) - none -
fig|6666666.229902.peg.2153 CDS CP003099.1 2095885 2096715 1 + 831 5-deoxy-glucuronate isomerase (EC 5.3.1.-) Inositol catabolism
fig|6666666.229902.peg.2154 CDS CP003099.1 2096801 2096670 -2 - 132 hypothetical protein - none -
fig|6666666.229902.peg.2155 CDS CP003099.1 2096844 2097683 3 + 840 Predicted transcriptional regulator of the myo-inositol catabolic operon Inositol catabolism
fig|6666666.229902.peg.2156 CDS CP003099.1 2099636 2097723 -2 - 1914 5-keto-2-deoxygluconokinase (EC 2.7.1.92) / uncharacterized domain Inositol catabolism;
Inositol catabolism
fig|6666666.229902.peg.2157 CDS CP003099.1 2099943 2101889 3 + 1947 Epi-inositol hydrolase (EC 3.7.1.-) Inositol catabolism
fig|6666666.229902.peg.2158 CDS CP003099.1 2101945 2102253 1 + 309 Inosose dehydratase (EC 4.2.1.44) Inositol catabolism
fig|6666666.229902.peg.2159 CDS CP003099.1 2102238 2102840 3 + 603 Inosose dehydratase (EC 4.2.1.44) Inositol catabolism
fig|6666666.229902.peg.2160 CDS CP003099.1 2102843 2103853 2 + 1011 Myo-inositol 2-dehydrogenase 1 (EC 1.1.1.18) Inositol catabolism
fig|6666666.229902.peg.2161 CDS CP003099.1 2104470 2103958 -3 - 513 Mannitol operon repressor Mannitol Utilization
fig|6666666.229902.peg.2162 CDS CP003099.1 2105693 2104545 -2 - 1149 Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17) Mannitol Utilization
fig|6666666.229902.peg.2163 CDS CP003099.1 2107651 2105771 -1 - 1881 PTS system, mannitol-specific IIC component (EC 2.7.1.69) / PTS system, mannitol-specific IIB component (EC 2.7.1.69) / PTS system, mannitol-specific IIA component (EC 2.7.1.69) Mannitol Utilization;
Mannitol Utilization;
Mannitol Utilization
fig|6666666.229902.peg.2164 CDS CP003099.1 2109494 2108061 -2 - 1434 RTX toxin transporter, determinant D # Leukotoxin secretion protein D - none -
fig|6666666.229902.peg.2165 CDS CP003099.1 2111632 2109509 -1 - 2124 Methionine ABC transporter ATP-binding protein Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229902.peg.2166 CDS CP003099.1 2114868 2111701 -3 - 3168 bifunctional hemolysin-adenylate cyclase precursor cAMP signaling in bacteria
fig|6666666.229902.peg.2167 CDS CP003099.1 2115387 2114881 -3 - 507 RTX toxin activating lysine-acyltransferase (EC 2.3.1.-) - none -
fig|6666666.229902.peg.2168 CDS CP003099.1 2117754 2116492 -3 - 1263 Serine hydroxymethyltransferase (EC 2.1.2.1) 5-FCL-like protein;
Glycine Biosynthesis;
Glycine and Serine Utilization;
Serine-glyoxylate cycle;
Serine Biosynthesis;
YrdC-YciO-Sua5 protein family
fig|6666666.229902.peg.2169 CDS CP003099.1 2118432 2118061 -3 - 372 hypothetical protein - none -
fig|6666666.229902.peg.2170 CDS CP003099.1 2118961 2118812 -1 - 150 hypothetical protein - none -
fig|6666666.229902.peg.2171 CDS CP003099.1 2120052 2119048 -3 - 1005 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) RNA methylation
fig|6666666.229902.peg.2172 CDS CP003099.1 2120108 2120557 2 + 450 DNA polymerase III psi subunit (EC 2.7.7.7) - none -
fig|6666666.229902.peg.2173 CDS CP003099.1 2120567 2121010 2 + 444 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Ribosome biogenesis bacterial;
YrdC-YciO-Sua5 protein family
fig|6666666.229902.peg.2174 CDS CP003099.1 2124428 2121012 -2 - 3417 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) DNA repair, bacterial RecBCD pathway
fig|6666666.229902.peg.2175 CDS CP003099.1 2124742 2124440 -1 - 303 FIG00696353: hypothetical protein - none -
fig|6666666.229902.peg.2176 CDS CP003099.1 2125319 2124717 -2 - 603 FIG00696574: hypothetical protein - none -
fig|6666666.229902.peg.2177 CDS CP003099.1 2125325 2125558 2 + 234 hypothetical protein - none -
fig|6666666.229902.peg.2178 CDS CP003099.1 2125838 2128342 2 + 2505 ATPase provides energy for both assembly of type IV secretion complex and secretion of T-DNA complex (VirB4) - none -
fig|6666666.229902.peg.2179 CDS CP003099.1 2128353 2129084 3 + 732 Minor pilin of type IV secretion complex, VirB5 - none -
fig|6666666.229902.peg.2180 CDS CP003099.1 2129098 2129325 1 + 228 hypothetical protein - none -
fig|6666666.229902.peg.2181 CDS CP003099.1 2129335 2130336 1 + 1002 Inner membrane protein of type IV secretion of T-DNA complex, VirB6 - none -
fig|6666666.229902.peg.2182 CDS CP003099.1 2130405 2130548 3 + 144 hypothetical protein - none -
fig|6666666.229902.peg.2183 CDS CP003099.1 2130545 2131231 2 + 687 Inner membrane protein forms channel for type IV secretion of T-DNA complex, VirB8 - none -
fig|6666666.229902.peg.2184 CDS CP003099.1 2131478 2132092 2 + 615 Outer membrane and periplasm component of type IV secretion of T-DNA complex, has secretin-like domain, VirB9 - none -
fig|6666666.229902.peg.2185 CDS CP003099.1 2132102 2133211 2 + 1110 Inner membrane protein forms channel for type IV secretion of T-DNA complex (VirB10) - none -
fig|6666666.229902.peg.2186 CDS CP003099.1 2133224 2134255 2 + 1032 ATPase provides energy for both assembly of type IV secretion complex and secretion of T-DNA complex (VirB11) - none -
fig|6666666.229902.peg.2187 CDS CP003099.1 2134255 2135994 1 + 1740 Coupling protein VirD4, ATPase required for T-DNA transfer - none -
fig|6666666.229902.peg.2188 CDS CP003099.1 2136040 2136477 1 + 438 hypothetical protein - none -
fig|6666666.229902.rna.1 RNA CP003099.1 3525 3452 -3 - 74 tRNA-Lys-CTT - none -
fig|6666666.229902.rna.2 RNA CP003099.1 3626 3554 -2 - 73 tRNA-Lys-TTT - none -
fig|6666666.229902.rna.3 RNA CP003099.1 3728 3656 -2 - 73 tRNA-Lys-TTT - none -
fig|6666666.229902.rna.4 RNA CP003099.1 51779 51693 -2 - 87 tRNA-Ser-TGA - none -
fig|6666666.229902.rna.5 RNA CP003099.1 59133 59205 3 + 73 tRNA-Gly-GCC tRNAs
fig|6666666.229902.rna.6 RNA CP003099.1 59217 59287 3 + 71 tRNA-Cys-GCA tRNAs
fig|6666666.229902.rna.7 RNA CP003099.1 74183 74110 -2 - 74 tRNA-Met-CAT - none -
fig|6666666.229902.rna.8 RNA CP003099.1 259932 259860 -3 - 73 tRNA-Ala-GGC tRNAs
fig|6666666.229902.rna.9 RNA CP003099.1 261742 261814 1 + 73 tRNA-Val-TAC - none -
fig|6666666.229902.rna.10 RNA CP003099.1 391772 391654 -2 - 119 5S RNA - none -
fig|6666666.229902.rna.11 RNA CP003099.1 395074 392033 -1 - 3042 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA - none -
fig|6666666.229902.rna.12 RNA CP003099.1 396996 395457 -3 - 1540 Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA - none -
fig|6666666.229902.rna.13 RNA CP003099.1 475371 475298 -3 - 74 tRNA-Arg-ACG tRNAs
fig|6666666.229902.rna.14 RNA CP003099.1 475502 475429 -2 - 74 tRNA-Arg-ACG tRNAs
fig|6666666.229902.rna.15 RNA CP003099.1 475613 475523 -2 - 91 tRNA-Ser-GCT - none -
fig|6666666.229902.rna.16 RNA CP003099.1 541764 541646 -3 - 119 5S RNA - none -
fig|6666666.229902.rna.17 RNA CP003099.1 545066 542024 -2 - 3043 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA - none -
fig|6666666.229902.rna.18 RNA CP003099.1 545348 545276 -2 - 73 tRNA-Glu-TTC - none -
fig|6666666.229902.rna.19 RNA CP003099.1 546987 545448 -3 - 1540 Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA - none -
fig|6666666.229902.rna.20 RNA CP003099.1 625934 626024 2 + 91 tRNA-SeC(p)-TCA - none -
fig|6666666.229902.rna.21 RNA CP003099.1 723283 723210 -1 - 74 tRNA-Arg-TCT - none -
fig|6666666.229902.rna.22 RNA CP003099.1 723393 723320 -3 - 74 tRNA-Pro-TGG - none -
fig|6666666.229902.rna.23 RNA CP003099.1 734225 734107 -2 - 119 5S RNA - none -
fig|6666666.229902.rna.24 RNA CP003099.1 737527 734485 -1 - 3043 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA - none -
fig|6666666.229902.rna.25 RNA CP003099.1 737809 737737 -1 - 73 tRNA-Glu-TTC - none -
fig|6666666.229902.rna.26 RNA CP003099.1 739448 737909 -2 - 1540 Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA - none -
fig|6666666.229902.rna.27 RNA CP003099.1 869122 869194 1 + 73 tRNA-Phe-GAA tRNAs
fig|6666666.229902.rna.28 RNA CP003099.1 869202 869274 3 + 73 tRNA-Asn-GTT - none -
fig|6666666.229902.rna.29 RNA CP003099.1 952527 952455 -3 - 73 tRNA-Thr-GGT - none -
fig|6666666.229902.rna.30 RNA CP003099.1 952605 952534 -3 - 72 tRNA-Gly-TCC - none -
fig|6666666.229902.rna.31 RNA CP003099.1 952730 952649 -2 - 82 tRNA-Tyr-GTA - none -
fig|6666666.229902.rna.32 RNA CP003099.1 952836 952764 -3 - 73 tRNA-Thr-TGT - none -
fig|6666666.229902.rna.33 RNA CP003099.1 981817 981744 -1 - 74 tRNA-Met-CAT - none -
fig|6666666.229902.rna.34 RNA CP003099.1 1054380 1054462 3 + 83 tRNA-Leu-GAG tRNAs
fig|6666666.229902.rna.35 RNA CP003099.1 1082644 1082727 1 + 84 tRNA-Leu-CAG tRNAs
fig|6666666.229902.rna.36 RNA CP003099.1 1142406 1142334 -3 - 73 tRNA-Lys-TTT - none -
fig|6666666.229902.rna.37 RNA CP003099.1 1142545 1142462 -1 - 84 tRNA-Leu-TAA - none -
fig|6666666.229902.rna.38 RNA CP003099.1 1142622 1142550 -3 - 73 tRNA-Gly-GCC tRNAs
fig|6666666.229902.rna.39 RNA CP003099.1 1171391 1172930 2 + 1540 Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA - none -
fig|6666666.229902.rna.40 RNA CP003099.1 1173014 1173087 2 + 74 tRNA-Ile-GAT - none -
fig|6666666.229902.rna.41 RNA CP003099.1 1173140 1173212 2 + 73 tRNA-Ala-TGC - none -
fig|6666666.229902.rna.42 RNA CP003099.1 1173495 1176537 3 + 3043 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA - none -
fig|6666666.229902.rna.43 RNA CP003099.1 1176797 1176915 2 + 119 5S RNA - none -
fig|6666666.229902.rna.44 RNA CP003099.1 1199120 1199048 -2 - 73 tRNA-Gly-GCC tRNAs
fig|6666666.229902.rna.45 RNA CP003099.1 1396383 1396456 3 + 74 tRNA-Met-CAT - none -
fig|6666666.229902.rna.46 RNA CP003099.1 1396465 1396546 1 + 82 tRNA-Leu-TAG - none -
fig|6666666.229902.rna.47 RNA CP003099.1 1396579 1396650 1 + 72 tRNA-Gln-TTG - none -
fig|6666666.229902.rna.48 RNA CP003099.1 1396691 1396762 2 + 72 tRNA-Gln-TTG - none -
fig|6666666.229902.rna.49 RNA CP003099.1 1422407 1422480 2 + 74 tRNA-Met-CAT - none -
fig|6666666.229902.rna.50 RNA CP003099.1 1677339 1677266 -3 - 74 tRNA-Val-GAC tRNAs
fig|6666666.229902.rna.51 RNA CP003099.1 1701230 1701112 -2 - 119 5S RNA - none -
fig|6666666.229902.rna.52 RNA CP003099.1 1704533 1701491 -2 - 3043 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA - none -
fig|6666666.229902.rna.53 RNA CP003099.1 1704888 1704816 -3 - 73 tRNA-Ala-TGC - none -
fig|6666666.229902.rna.54 RNA CP003099.1 1705014 1704941 -3 - 74 tRNA-Ile-GAT - none -
fig|6666666.229902.rna.55 RNA CP003099.1 1706637 1705098 -3 - 1540 Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA - none -
fig|6666666.229902.rna.56 RNA CP003099.1 1779644 1779730 2 + 87 tRNA-Ser-GGA tRNAs
fig|6666666.229902.rna.57 RNA CP003099.1 1798346 1798274 -2 - 73 tRNA-Trp-CCA tRNAs
fig|6666666.229902.rna.58 RNA CP003099.1 1798456 1798384 -1 - 73 tRNA-Undet-??? - none -
fig|6666666.229902.rna.59 RNA CP003099.1 1801825 1798783 -1 - 3043 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA - none -
fig|6666666.229902.rna.60 RNA CP003099.1 1802180 1802108 -2 - 73 tRNA-Ala-TGC - none -
fig|6666666.229902.rna.61 RNA CP003099.1 1802306 1802233 -2 - 74 tRNA-Ile-GAT - none -
fig|6666666.229902.rna.62 RNA CP003099.1 1803929 1802390 -2 - 1540 Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA - none -
fig|6666666.229902.rna.63 RNA CP003099.1 1804190 1804117 -2 - 74 tRNA-Pro-TGG - none -
fig|6666666.229902.rna.64 RNA CP003099.1 1804268 1804196 -2 - 73 tRNA-His-GTG - none -
fig|6666666.229902.rna.65 RNA CP003099.1 1804376 1804303 -2 - 74 tRNA-Arg-CCG tRNAs
fig|6666666.229902.rna.66 RNA CP003099.1 1854307 1854379 1 + 73 tRNA-Asn-GTT - none -
fig|6666666.229902.rna.67 RNA CP003099.1 1928982 1929064 3 + 83 tRNA-Leu-CAA tRNAs
fig|6666666.229902.rna.68 RNA CP003099.1 2068459 2068532 1 + 74 tRNA-Asp-GTC - none -
fig|6666666.229902.rna.69 RNA CP003099.1 2068558 2068631 1 + 74 tRNA-Asp-GTC - none -