fig|6666666.229910.peg.1 CDS CP007502.1 1 1362 1 + 1362 Chromosomal replication initiator protein DnaA Cell Division Subsystem including YidCD;
DNA replication cluster 1
fig|6666666.229910.peg.2 CDS CP007502.1 1370 2473 2 + 1104 DNA polymerase III beta subunit (EC 2.7.7.7) Cell Division Subsystem including YidCD;
DNA replication cluster 1
fig|6666666.229910.peg.3 CDS CP007502.1 2477 3553 2 + 1077 DNA recombination and repair protein RecF Cell Division Subsystem including YidCD;
DNA repair, bacterial RecFOR pathway;
DNA replication cluster 1
fig|6666666.229910.peg.4 CDS CP007502.1 4355 3600 -2 - 756 Ubiquinone/menaquinone biosynthesis methyltransferase UbiE (EC 2.1.1.-) Menaquinone and Phylloquinone Biosynthesis;
Ubiquinone Biosynthesis
fig|6666666.229910.peg.5 CDS CP007502.1 4543 5118 1 + 576 Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1) Oxidative stress;
Protection from Reactive Oxygen Species
fig|6666666.229910.peg.6 CDS CP007502.1 5385 5558 3 + 174 hypothetical protein - none -
fig|6666666.229910.peg.7 CDS CP007502.1 5732 5857 2 + 126 Mobile element protein - none -
fig|6666666.229910.peg.8 CDS CP007502.1 5851 6360 1 + 510 Mobile element protein - none -
fig|6666666.229910.peg.9 CDS CP007502.1 6821 6570 -2 - 252 Transcriptional regulator, XRE family - none -
fig|6666666.229910.peg.10 CDS CP007502.1 6972 8396 3 + 1425 NAD-dependent malic enzyme (EC 1.1.1.38) Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229910.peg.11 CDS CP007502.1 8499 10334 3 + 1836 hypothetical protein - none -
fig|6666666.229910.peg.12 CDS CP007502.1 10572 10709 3 + 138 hypothetical protein - none -
fig|6666666.229910.peg.13 CDS CP007502.1 10690 11820 1 + 1131 hypothetical protein - none -
fig|6666666.229910.peg.14 CDS CP007502.1 11839 12885 1 + 1047 putative phage protein - none -
fig|6666666.229910.peg.15 CDS CP007502.1 12939 14549 3 + 1611 putative phage protein - none -
fig|6666666.229910.peg.16 CDS CP007502.1 14812 17679 1 + 2868 DNA helicase IV CBSS-83333.1.peg.946;
DNA repair, bacterial UvrD and related helicases
fig|6666666.229910.peg.17 CDS CP007502.1 17709 18947 3 + 1239 hypothetical protein - none -
fig|6666666.229910.peg.18 CDS CP007502.1 19151 19363 2 + 213 Transcriptional regulator, MerR family Cobalt-zinc-cadmium resistance
fig|6666666.229910.peg.19 CDS CP007502.1 19375 20049 1 + 675 hypothetical protein - none -
fig|6666666.229910.peg.20 CDS CP007502.1 20602 20129 -1 - 474 hypothetical protein - none -
fig|6666666.229910.peg.21 CDS CP007502.1 23353 20732 -1 - 2622 FIG00647261: hypothetical protein - none -
fig|6666666.229910.peg.22 CDS CP007502.1 25003 23363 -1 - 1641 Type III restriction-modification system methylation subunit (EC 2.1.1.72) Restriction-Modification System
fig|6666666.229910.peg.23 CDS CP007502.1 25228 25016 -1 - 213 hypothetical protein - none -
fig|6666666.229910.peg.24 CDS CP007502.1 25681 25418 -1 - 264 FIGfam110555 CBSS-203122.12.peg.188
fig|6666666.229910.peg.25 CDS CP007502.1 26553 25780 -3 - 774 Mll9366 protein CBSS-203122.12.peg.188
fig|6666666.229910.peg.26 CDS CP007502.1 27404 26511 -2 - 894 TniB NTP-binding protein CBSS-203122.12.peg.188
fig|6666666.229910.peg.27 CDS CP007502.1 29314 27404 -1 - 1911 TniA putative transposase CBSS-203122.12.peg.188
fig|6666666.229910.peg.28 CDS CP007502.1 29840 29307 -2 - 534 FIGfam050825 CBSS-203122.12.peg.188
fig|6666666.229910.peg.29 CDS CP007502.1 30452 30078 -2 - 375 Predicted flavoproteins - none -
fig|6666666.229910.peg.30 CDS CP007502.1 31498 30449 -1 - 1050 Cytochrome c-type heme lyase subunit nrfF, nitrite reductase complex assembly - none -
fig|6666666.229910.peg.31 CDS CP007502.1 32025 31495 -3 - 531 Putative thiol:disulfide oxidoreductase, nitrite reductase complex assembly - none -
fig|6666666.229910.peg.32 CDS CP007502.1 33928 32018 -1 - 1911 Cytochrome c-type heme lyase subunit nrfE, nitrite reductase complex assembly - none -
fig|6666666.229910.peg.33 CDS CP007502.1 33950 34318 2 + 369 hypothetical protein - none -
fig|6666666.229910.peg.34 CDS CP007502.1 35480 34515 -2 - 966 NrfD protein - none -
fig|6666666.229910.peg.35 CDS CP007502.1 36100 35477 -1 - 624 NrfC protein - none -
fig|6666666.229910.peg.36 CDS CP007502.1 36816 36151 -3 - 666 Cytochrome c-type protein NrfB precursor - none -
fig|6666666.229910.peg.37 CDS CP007502.1 38413 36890 -1 - 1524 Cytochrome c552 precursor (EC 1.7.2.2) Soluble cytochromes and functionally related electron carriers
fig|6666666.229910.peg.38 CDS CP007502.1 39280 38990 -1 - 291 hypothetical protein - none -
fig|6666666.229910.peg.39 CDS CP007502.1 39921 39298 -3 - 624 Parvulin-like peptidyl-prolyl isomerase - none -
fig|6666666.229910.peg.40 CDS CP007502.1 40979 40056 -2 - 924 Cytochrome c heme lyase subunit CcmH Biogenesis of c-type cytochromes;
Copper homeostasis
fig|6666666.229910.peg.41 CDS CP007502.1 41431 40979 -1 - 453 Cytochrome c heme lyase subunit CcmL Biogenesis of c-type cytochromes
fig|6666666.229910.peg.42 CDS CP007502.1 42075 41530 -3 - 546 Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase Biogenesis of c-type cytochromes;
Periplasmic disulfide interchange
fig|6666666.229910.peg.43 CDS CP007502.1 44062 42104 -1 - 1959 Cytochrome c heme lyase subunit CcmF Biogenesis of c-type cytochromes;
Copper homeostasis
fig|6666666.229910.peg.44 CDS CP007502.1 44580 44062 -3 - 519 Cytochrome c-type biogenesis protein CcmE, heme chaperone Biogenesis of c-type cytochromes
fig|6666666.229910.peg.45 CDS CP007502.1 44783 44577 -2 - 207 Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE Biogenesis of c-type cytochromes
fig|6666666.229910.peg.46 CDS CP007502.1 45538 44801 -1 - 738 Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE Biogenesis of c-type cytochromes
fig|6666666.229910.peg.47 CDS CP007502.1 46214 45549 -2 - 666 ABC transporter involved in cytochrome c biogenesis, CcmB subunit Biogenesis of c-type cytochromes
fig|6666666.229910.peg.48 CDS CP007502.1 46854 46219 -3 - 636 ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA Biogenesis of c-type cytochromes
fig|6666666.229910.peg.49 CDS CP007502.1 48219 47026 -3 - 1194 Bicyclomycin resistance protein - none -
fig|6666666.229910.peg.50 CDS CP007502.1 48925 48224 -1 - 702 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses
fig|6666666.229910.peg.51 CDS CP007502.1 48967 49149 1 + 183 hypothetical protein - none -
fig|6666666.229910.peg.52 CDS CP007502.1 49142 51406 2 + 2265 NADP-dependent malic enzyme (EC 1.1.1.40) Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229910.peg.53 CDS CP007502.1 51550 52194 1 + 645 Manganese superoxide dismutase (EC 1.15.1.1) Oxidative stress;
Protection from Reactive Oxygen Species
fig|6666666.229910.peg.54 CDS CP007502.1 52605 53396 3 + 792 putative lipoprotein - none -
fig|6666666.229910.peg.55 CDS CP007502.1 54427 53600 -1 - 828 YpfJ protein, zinc metalloprotease superfamily Broadly distributed proteins not in subsystems
fig|6666666.229910.peg.56 CDS CP007502.1 54567 55010 3 + 444 FIG00904084: hypothetical protein - none -
fig|6666666.229910.peg.57 CDS CP007502.1 55696 55100 -1 - 597 Acyl-phosphate:glycerol-3-phosphate O-acyltransferase PlsY Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229910.peg.58 CDS CP007502.1 55793 56146 2 + 354 Dihydroneopterin aldolase (EC 4.1.2.25) Folate Biosynthesis;
Folate biosynthesis cluster
fig|6666666.229910.peg.59 CDS CP007502.1 56167 57597 1 + 1431 Transglycosylase, Slt family - none -
fig|6666666.229910.peg.60 CDS CP007502.1 57608 57754 2 + 147 hypothetical protein - none -
fig|6666666.229910.peg.61 CDS CP007502.1 58336 57797 -1 - 540 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation Biogenesis of c-type cytochromes;
Periplasmic disulfide interchange
fig|6666666.229910.peg.62 CDS CP007502.1 59904 58360 -3 - 1545 Na+/H+ antiporter NhaB - none -
fig|6666666.229910.peg.63 CDS CP007502.1 60099 60830 3 + 732 Transcriptional regulator for fatty acid degradation FadR, GntR family - none -
fig|6666666.229910.peg.64 CDS CP007502.1 62165 60951 -2 - 1215 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229910.peg.65 CDS CP007502.1 62282 63586 2 + 1305 Menaquinone-specific isochorismate synthase (EC 5.4.4.2) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229910.peg.66 CDS CP007502.1 63577 65283 1 + 1707 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase (EC 2.2.1.9) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229910.peg.67 CDS CP007502.1 65336 66085 2 + 750 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase (EC 4.2.99.20) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229910.peg.68 CDS CP007502.1 66181 66450 1 + 270 SSU ribosomal protein S15p (S13e) - none -
fig|6666666.229910.peg.69 CDS CP007502.1 66658 67812 1 + 1155 S-adenosylmethionine synthetase (EC 2.5.1.6) Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229910.peg.70 CDS CP007502.1 67881 68381 3 + 501 Protein sprT - none -
fig|6666666.229910.peg.71 CDS CP007502.1 68538 69779 3 + 1242 Serine transporter Glycine and Serine Utilization;
Pyruvate Alanine Serine Interconversions
fig|6666666.229910.peg.72 CDS CP007502.1 69872 71236 2 + 1365 L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17) Glycine and Serine Utilization;
Glycine and Serine Utilization;
Pyruvate Alanine Serine Interconversions;
Pyruvate Alanine Serine Interconversions
fig|6666666.229910.peg.73 CDS CP007502.1 72466 71417 -1 - 1050 L-asparaginase (EC 3.5.1.1) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229910.peg.74 CDS CP007502.1 72761 73900 2 + 1140 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) CBSS-498211.3.peg.1415;
Conserved gene cluster associated with Met-tRNA formyltransferase;
RNA methylation
fig|6666666.229910.peg.75 CDS CP007502.1 73922 74473 2 + 552 Type IV pilus biogenesis protein PilF CBSS-498211.3.peg.1415
fig|6666666.229910.peg.76 CDS CP007502.1 74617 75672 1 + 1056 FIG021952: putative membrane protein CBSS-498211.3.peg.1415
fig|6666666.229910.peg.77 CDS CP007502.1 75684 76787 3 + 1104 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (EC 1.17.7.1) CBSS-498211.3.peg.1415;
CBSS-83331.1.peg.3039;
Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.229910.peg.78 CDS CP007502.1 76809 78086 3 + 1278 Histidyl-tRNA synthetase (EC 6.1.1.21) CBSS-498211.3.peg.1415;
tRNA aminoacylation, His
fig|6666666.229910.peg.79 CDS CP007502.1 78097 78711 1 + 615 Mlr7403 protein CBSS-290633.1.peg.1906;
CBSS-498211.3.peg.1415
fig|6666666.229910.peg.80 CDS CP007502.1 78764 79216 2 + 453 Putative protein-S-isoprenylcysteine methyltransferase - none -
fig|6666666.229910.peg.81 CDS CP007502.1 79926 79222 -3 - 705 Chromosomal replication initiator protein DnaA Cell Division Subsystem including YidCD;
DNA replication cluster 1
fig|6666666.229910.peg.82 CDS CP007502.1 79912 80049 1 + 138 hypothetical protein - none -
fig|6666666.229910.peg.83 CDS CP007502.1 81299 80046 -2 - 1254 Uracil permease De Novo Pyrimidine Synthesis
fig|6666666.229910.peg.84 CDS CP007502.1 82049 81423 -2 - 627 Uracil phosphoribosyltransferase (EC 2.4.2.9) De Novo Pyrimidine Synthesis;
pyrimidine conversions
fig|6666666.229910.peg.85 CDS CP007502.1 84031 82184 -1 - 1848 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase
fig|6666666.229910.peg.86 CDS CP007502.1 86437 84164 -1 - 2274 Glutathione biosynthesis bifunctional protein gshF (EC 6.3.2.2)(EC 6.3.2.3) Glutathione: Biosynthesis and gamma-glutamyl cycle
fig|6666666.229910.peg.87 CDS CP007502.1 86669 88270 2 + 1602 Dca - none -
fig|6666666.229910.peg.88 CDS CP007502.1 88527 89093 3 + 567 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent;
cAMP signaling in bacteria
fig|6666666.229910.peg.89 CDS CP007502.1 89103 90344 3 + 1242 ATP-dependent Clp protease ATP-binding subunit ClpX Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229910.peg.90 CDS CP007502.1 90730 90407 -1 - 324 FIG074102: hypothetical protein - none -
fig|6666666.229910.peg.91 CDS CP007502.1 90887 90723 -2 - 165 Phage-related protein - none -
fig|6666666.229910.peg.92 CDS CP007502.1 92035 91190 -1 - 846 membrane protein, putative - none -
fig|6666666.229910.peg.93 CDS CP007502.1 94267 92108 -1 - 2160 Copper-translocating P-type ATPase (EC 3.6.3.4) Copper Transport System;
Copper homeostasis
fig|6666666.229910.peg.94 CDS CP007502.1 94566 94354 -3 - 213 Copper chaperone Copper homeostasis
fig|6666666.229910.peg.95 CDS CP007502.1 94661 95047 2 + 387 Cu(I)-responsive transcriptional regulator Copper homeostasis
fig|6666666.229910.peg.96 CDS CP007502.1 95359 95075 -1 - 285 COG1720: Uncharacterized conserved protein tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229910.peg.97 CDS CP007502.1 95487 96392 3 + 906 1,4-dihydroxy-2-naphthoate polyprenyltransferase (EC 2.5.1.74) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229910.peg.98 CDS CP007502.1 96443 96943 2 + 501 Ribonuclease E inhibitor RraA RNA processing and degradation, bacterial
fig|6666666.229910.peg.99 CDS CP007502.1 97132 98514 1 + 1383 Arsenic efflux pump protein Arsenic resistance
fig|6666666.229910.peg.100 CDS CP007502.1 99117 98584 -3 - 534 FIG138315: Putative alpha helix protein Putative TldE-TldD proteolytic complex
fig|6666666.229910.peg.101 CDS CP007502.1 99238 100599 1 + 1362 TldE protein, part of TldE/TldD proteolytic complex Putative TldE-TldD proteolytic complex
fig|6666666.229910.peg.102 CDS CP007502.1 100837 101376 1 + 540 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) Cell division-ribosomal stress proteins cluster;
Folate biosynthesis cluster;
Purine conversions
fig|6666666.229910.peg.103 CDS CP007502.1 102585 101446 -3 - 1140 Glycerate kinase (EC 2.7.1.31) D-galactarate, D-glucarate and D-glycerate catabolism;
D-galactarate, D-glucarate and D-glycerate catabolism - gjo;
Glycerate metabolism;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Glycine and Serine Utilization;
Serine-glyoxylate cycle
fig|6666666.229910.peg.104 CDS CP007502.1 103856 102582 -2 - 1275 D-glycerate transporter (predicted) D-galactarate, D-glucarate and D-glycerate catabolism;
D-galactarate, D-glucarate and D-glycerate catabolism - gjo;
Glycerate metabolism
fig|6666666.229910.peg.105 CDS CP007502.1 105091 103988 -1 - 1104 Sugar diacid utilization regulator SdaR D-galactarate, D-glucarate and D-glycerate catabolism;
D-galactarate, D-glucarate and D-glycerate catabolism - gjo
fig|6666666.229910.peg.106 CDS CP007502.1 105404 105183 -2 - 222 Mobile element protein - none -
fig|6666666.229910.peg.107 CDS CP007502.1 105396 106007 3 + 612 UDP-glucose dehydrogenase (EC 1.1.1.22) - none -
fig|6666666.229910.peg.108 CDS CP007502.1 107888 106092 -2 - 1797 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) - none -
fig|6666666.229910.peg.109 CDS CP007502.1 108917 108015 -2 - 903 Lipoprotein nlpI precursor - none -
fig|6666666.229910.peg.110 CDS CP007502.1 111233 109002 -2 - 2232 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) Bacterial RNA-metabolizing Zn-dependent hydrolases;
Polyadenylation bacterial
fig|6666666.229910.peg.111 CDS CP007502.1 111425 111895 2 + 471 Putative sugar isomerase involved in processing of exogenous sialic acid Sialic Acid Metabolism
fig|6666666.229910.peg.112 CDS CP007502.1 112009 111884 -1 - 126 hypothetical protein - none -
fig|6666666.229910.peg.113 CDS CP007502.1 113022 112369 -3 - 654 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD Recycling of Peptidoglycan Amino Acids
fig|6666666.229910.peg.114 CDS CP007502.1 113045 113497 2 + 453 Type IV pilin PilA Type IV pilus
fig|6666666.229910.peg.115 CDS CP007502.1 113524 114933 1 + 1410 Type IV fimbrial assembly, ATPase PilB Type IV pilus
fig|6666666.229910.peg.116 CDS CP007502.1 114926 116149 2 + 1224 Type II secretory pathway, component PulF / Type IV fimbrial assembly protein PilC Type IV pilus
fig|6666666.229910.peg.117 CDS CP007502.1 116149 116835 1 + 687 Leader peptidase (Prepilin peptidase) (EC 3.4.23.43) / N-methyltransferase (EC 2.1.1.-) Type IV pilus;
Type IV pilus
fig|6666666.229910.peg.118 CDS CP007502.1 116885 117508 2 + 624 Dephospho-CoA kinase (EC 2.7.1.24) Coenzyme A Biosynthesis
fig|6666666.229910.peg.119 CDS CP007502.1 117498 117710 3 + 213 FIG003276: zinc-binding protein - none -
fig|6666666.229910.peg.120 CDS CP007502.1 117710 117982 2 + 273 FIG00904058: hypothetical protein - none -
fig|6666666.229910.peg.121 CDS CP007502.1 118379 119752 2 + 1374 Sodium/glycine symporter GlyP - none -
fig|6666666.229910.peg.122 CDS CP007502.1 119980 120303 1 + 324 Ribosome hibernation protein YfiA Ribosome activity modulation
fig|6666666.229910.peg.123 CDS CP007502.1 120758 121006 2 + 249 unknown - none -
fig|6666666.229910.peg.124 CDS CP007502.1 121921 121622 -1 - 300 DNA-binding protein Fis DNA structural proteins, bacterial
fig|6666666.229910.peg.125 CDS CP007502.1 122964 121915 -3 - 1050 tRNA dihydrouridine synthase B (EC 1.-.-.-) tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229910.peg.126 CDS CP007502.1 124093 123209 -1 - 885 Ribosomal protein L11 methyltransferase (EC 2.1.1.-) Heat shock dnaK gene cluster extended;
Ribosome biogenesis bacterial
fig|6666666.229910.peg.127 CDS CP007502.1 124649 124059 -2 - 591 Protein involved in cell division - none -
fig|6666666.229910.peg.128 CDS CP007502.1 126104 124668 -2 - 1437 Pantothenate:Na+ symporter (TC 2.A.21.1.1) CBSS-221988.1.peg.1679;
Coenzyme A Biosynthesis
fig|6666666.229910.peg.129 CDS CP007502.1 126373 126101 -1 - 273 FIG003021: Membrane protein CBSS-221988.1.peg.1679
fig|6666666.229910.peg.130 CDS CP007502.1 127785 126397 -3 - 1389 FOG: TPR repeat - none -
fig|6666666.229910.peg.131 CDS CP007502.1 128840 128706 -2 - 135 hypothetical protein - none -
fig|6666666.229910.peg.132 CDS CP007502.1 130295 128949 -2 - 1347 Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14) CBSS-221988.1.peg.1679;
Fatty Acid Biosynthesis FASII
fig|6666666.229910.peg.133 CDS CP007502.1 130805 130338 -2 - 468 Biotin carboxyl carrier protein of acetyl-CoA carboxylase CBSS-221988.1.peg.1679;
Fatty Acid Biosynthesis FASII
fig|6666666.229910.peg.134 CDS CP007502.1 130822 130974 1 + 153 hypothetical protein - none -
fig|6666666.229910.peg.135 CDS CP007502.1 131405 130929 -2 - 477 3-dehydroquinate dehydratase II (EC 4.2.1.10) CBSS-221988.1.peg.1679;
Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate);
Quinate degradation
fig|6666666.229910.peg.136 CDS CP007502.1 132505 131504 -1 - 1002 O-succinylbenzoate synthase (EC 4.2.1.113) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo;
Muconate lactonizing enzyme family
fig|6666666.229910.peg.137 CDS CP007502.1 132815 132486 -2 - 330 Nucleotidyltransferase (EC 2.7.7.-) - none -
fig|6666666.229910.peg.138 CDS CP007502.1 133216 132797 -1 - 420 Nucleotidyltransferase substrate binding protein, HI0074 - none -
fig|6666666.229910.peg.139 CDS CP007502.1 134113 133256 -1 - 858 Naphthoate synthase (EC 4.1.3.36) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229910.peg.140 CDS CP007502.1 134992 134225 -1 - 768 Triosephosphate isomerase (EC 5.3.1.1) CBSS-331978.3.peg.2915;
Glycolysis and Gluconeogenesis
fig|6666666.229910.peg.141 CDS CP007502.1 135165 135608 3 + 444 Histone acetyltransferase HPA2 and related acetyltransferases CBSS-216591.1.peg.168
fig|6666666.229910.peg.142 CDS CP007502.1 137049 135682 -3 - 1368 Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22) Heme and Siroheme Biosynthesis
fig|6666666.229910.peg.143 CDS CP007502.1 137502 137068 -3 - 435 Periplasmic/membrane protein associated with DUF414 - none -
fig|6666666.229910.peg.144 CDS CP007502.1 138075 137515 -3 - 561 Protein of unknown function DUF414 - none -
fig|6666666.229910.peg.145 CDS CP007502.1 138703 138176 -1 - 528 tRNA-specific adenosine-34 deaminase (EC 3.5.4.-) tRNA modification Bacteria;
tRNA processing;
tRNAmodification position 34
fig|6666666.229910.peg.146 CDS CP007502.1 139880 139029 -2 - 852 Thymidylate synthase (EC 2.1.1.45) Folate Biosynthesis;
pyrimidine conversions
fig|6666666.229910.peg.147 CDS CP007502.1 140674 139877 -1 - 798 Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-) Lipoprotein Biosynthesis
fig|6666666.229910.peg.148 CDS CP007502.1 141480 140683 -3 - 798 Protein of unknown function DUF81 - none -
fig|6666666.229910.peg.149 CDS CP007502.1 142082 141483 -2 - 600 Adenosine (5@1)-pentaphospho-(5@1@1)-adenosine pyrophosphohydrolase (EC 3.6.1.-) CBSS-224911.1.peg.435;
CBSS-364106.7.peg.3204;
Nudix proteins (nucleoside triphosphate hydrolases);
Phosphoglycerate mutase protein family
fig|6666666.229910.peg.150 CDS CP007502.1 142302 142721 3 + 420 Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229910.peg.151 CDS CP007502.1 142732 144240 1 + 1509 Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229910.peg.152 CDS CP007502.1 144237 145133 3 + 897 Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229910.peg.153 CDS CP007502.1 145223 146095 2 + 873 Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229910.peg.154 CDS CP007502.1 146095 146226 1 + 132 hypothetical protein - none -
fig|6666666.229910.peg.155 CDS CP007502.1 146178 147110 3 + 933 Ribokinase (EC 2.7.1.15) D-ribose utilization;
Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.229910.peg.156 CDS CP007502.1 147417 147208 -3 - 210 Cold shock protein CspG Cold shock, CspA family of proteins
fig|6666666.229910.peg.157 CDS CP007502.1 149309 147864 -2 - 1446 Glutamyl-tRNA synthetase (EC 6.1.1.17) Heme and Siroheme Biosynthesis;
tRNA aminoacylation, Glu and Gln
fig|6666666.229910.peg.158 CDS CP007502.1 149997 150785 3 + 789 Mannosyltransferase OCH1 and related enzymes - none -
fig|6666666.229910.peg.159 CDS CP007502.1 150898 152274 1 + 1377 Argininosuccinate lyase (EC 4.3.2.1) - none -
fig|6666666.229910.peg.160 CDS CP007502.1 152576 153928 2 + 1353 NADP-specific glutamate dehydrogenase (EC 1.4.1.4) Arginine and Ornithine Degradation;
Glutamate dehydrogenases;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Proline Synthesis
fig|6666666.229910.peg.161 CDS CP007502.1 154417 155871 1 + 1455 Catalase (EC 1.11.1.6) Oxidative stress;
Protection from Reactive Oxygen Species
fig|6666666.229910.peg.162 CDS CP007502.1 156702 156544 -3 - 159 hypothetical protein - none -
fig|6666666.229910.peg.163 CDS CP007502.1 160476 157000 -3 - 3477 DNA polymerase III alpha subunit (EC 2.7.7.7) - none -
fig|6666666.229910.peg.164 CDS CP007502.1 160441 160620 1 + 180 hypothetical protein - none -
fig|6666666.229910.peg.165 CDS CP007502.1 160675 162462 1 + 1788 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) Biotin biosynthesis;
Biotin synthesis cluster
fig|6666666.229910.peg.166 CDS CP007502.1 162479 162595 2 + 117 hypothetical protein - none -
fig|6666666.229910.peg.167 CDS CP007502.1 163341 168704 3 + 5364 Autotransporter adhesin - none -
fig|6666666.229910.peg.168 CDS CP007502.1 168958 171084 1 + 2127 Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) Ribonucleotide reduction
fig|6666666.229910.peg.169 CDS CP007502.1 171265 171384 1 + 120 hypothetical protein - none -
fig|6666666.229910.peg.170 CDS CP007502.1 171652 171527 -1 - 126 hypothetical protein - none -
fig|6666666.229910.peg.171 CDS CP007502.1 171686 172153 2 + 468 Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) Ribonucleotide reduction
fig|6666666.229910.peg.172 CDS CP007502.1 172968 172180 -3 - 789 Putative deoxyribonuclease YjjV Deoxyribose and Deoxynucleoside Catabolism;
YcfH
fig|6666666.229910.peg.173 CDS CP007502.1 173252 172971 -2 - 282 hypothetical protein - none -
fig|6666666.229910.peg.174 CDS CP007502.1 173400 173245 -3 - 156 hypothetical protein - none -
fig|6666666.229910.peg.175 CDS CP007502.1 174006 173494 -3 - 513 Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase;
Queuosine-Archaeosine Biosynthesis
fig|6666666.229910.peg.176 CDS CP007502.1 174076 175485 1 + 1410 Cysteinyl-tRNA synthetase (EC 6.1.1.16) tRNA aminoacylation, Cys
fig|6666666.229910.peg.177 CDS CP007502.1 176595 175633 -3 - 963 Lipoate synthase Lipoic acid metabolism;
Lipoic acid synthesis cluster
fig|6666666.229910.peg.178 CDS CP007502.1 177298 176660 -1 - 639 Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase Lipoic acid metabolism;
Lipoic acid synthesis cluster
fig|6666666.229910.peg.179 CDS CP007502.1 177643 177344 -1 - 300 Proposed lipoate regulatory protein YbeD Lipoic acid metabolism;
Lipoic acid synthesis cluster
fig|6666666.229910.peg.180 CDS CP007502.1 178906 177716 -1 - 1191 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) Metallocarboxypeptidases (EC 3.4.17.-);
Murein Hydrolases;
Peptidoglycan Biosynthesis
fig|6666666.229910.peg.181 CDS CP007502.1 179794 178937 -1 - 858 Rare lipoprotein A precursor Peptidoglycan Biosynthesis
fig|6666666.229910.peg.182 CDS CP007502.1 180964 179843 -1 - 1122 Rod shape-determining protein RodA Bacterial Cytoskeleton;
Peptidoglycan Biosynthesis
fig|6666666.229910.peg.183 CDS CP007502.1 182912 180951 -2 - 1962 Penicillin-binding protein 2 (PBP-2) 16S rRNA modification within P site of ribosome;
CBSS-83331.1.peg.3039;
Peptidoglycan Biosynthesis
fig|6666666.229910.peg.184 CDS CP007502.1 183461 182925 -2 - 537 LSU m3Psi1915 methyltransferase RlmH RNA methylation;
Ribosome biogenesis bacterial;
tRNA modification Bacteria
fig|6666666.229910.peg.185 CDS CP007502.1 183760 183452 -1 - 309 Iojap protein - none -
fig|6666666.229910.peg.186 CDS CP007502.1 185083 183827 -1 - 1257 ATP-dependent RNA helicase RhlB - none -
fig|6666666.229910.peg.187 CDS CP007502.1 185408 186646 2 + 1239 Transcription termination factor Rho Transcription factors bacterial
fig|6666666.229910.peg.188 CDS CP007502.1 188006 186771 -2 - 1236 Major facilitator superfamily (MFS) transport protein - none -
fig|6666666.229910.peg.189 CDS CP007502.1 188093 188206 2 + 114 hypothetical protein - none -
fig|6666666.229910.peg.190 CDS CP007502.1 188471 188241 -2 - 231 Acyl carrier protein Fatty Acid Biosynthesis FASII;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229910.peg.191 CDS CP007502.1 189473 188745 -2 - 729 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) Fatty Acid Biosynthesis FASII
fig|6666666.229910.peg.192 CDS CP007502.1 190436 189498 -2 - 939 Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39) Fatty Acid Biosynthesis FASII
fig|6666666.229910.peg.193 CDS CP007502.1 191493 190543 -3 - 951 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) Fatty Acid Biosynthesis FASII
fig|6666666.229910.peg.194 CDS CP007502.1 192559 191540 -1 - 1020 Phosphate:acyl-ACP acyltransferase PlsX Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229910.peg.195 CDS CP007502.1 192756 192586 -3 - 171 LSU ribosomal protein L32p - none -
fig|6666666.229910.peg.196 CDS CP007502.1 193297 192773 -1 - 525 COG1399 protein, clustered with ribosomal protein L32p - none -
fig|6666666.229910.peg.197 CDS CP007502.1 194010 193369 -3 - 642 Dethiobiotin synthetase (EC 6.3.3.3) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229910.peg.198 CDS CP007502.1 194774 194010 -2 - 765 Biotin synthesis protein BioC Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229910.peg.199 CDS CP007502.1 195418 194768 -1 - 651 Biotin synthesis protein BioG Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229910.peg.200 CDS CP007502.1 196574 195399 -2 - 1176 8-amino-7-oxononanoate synthase (EC 2.3.1.47) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229910.peg.201 CDS CP007502.1 197856 196567 -3 - 1290 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229910.peg.202 CDS CP007502.1 198079 198948 1 + 870 Phosphatidylserine decarboxylase (EC 4.1.1.65) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229910.peg.203 CDS CP007502.1 198974 199606 2 + 633 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase
fig|6666666.229910.peg.204 CDS CP007502.1 200072 199671 -2 - 402 Glutamate 5-kinase (EC 2.7.2.11) Proline Synthesis
fig|6666666.229910.peg.205 CDS CP007502.1 200314 200102 -1 - 213 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA Proline Synthesis;
Proline Synthesis
fig|6666666.229910.peg.206 CDS CP007502.1 200474 200295 -2 - 180 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA Proline Synthesis;
Proline Synthesis
fig|6666666.229910.peg.207 CDS CP007502.1 200625 201410 3 + 786 FIG023911: putative membrane protein CBSS-316275.9.peg.382
fig|6666666.229910.peg.208 CDS CP007502.1 201412 201876 1 + 465 FIG001826: putative inner membrane protein CBSS-316275.9.peg.382
fig|6666666.229910.peg.209 CDS CP007502.1 201916 202401 1 + 486 Dihydrofolate reductase (EC 1.5.1.3) 5-FCL-like protein;
Folate Biosynthesis
fig|6666666.229910.peg.210 CDS CP007502.1 203831 202521 -2 - 1311 Magnesium and cobalt efflux protein CorC CBSS-56780.10.peg.1536;
Copper homeostasis: copper tolerance;
Glycyl-tRNA synthetase containing cluster;
Magnesium transport;
tRNA-methylthiotransferase containing cluster
fig|6666666.229910.peg.211 CDS CP007502.1 203785 203925 1 + 141 hypothetical protein - none -
fig|6666666.229910.peg.212 CDS CP007502.1 204446 203922 -2 - 525 FIG00696143: hypothetical protein - none -
fig|6666666.229910.peg.213 CDS CP007502.1 205260 204478 -3 - 783 Putative deoxyribonuclease YcfH YcfH
fig|6666666.229910.peg.214 CDS CP007502.1 206247 205264 -3 - 984 DNA polymerase III delta prime subunit (EC 2.7.7.7) - none -
fig|6666666.229910.peg.215 CDS CP007502.1 206876 206244 -2 - 633 Thymidylate kinase (EC 2.7.4.9) pyrimidine conversions
fig|6666666.229910.peg.216 CDS CP007502.1 207921 206878 -3 - 1044 FIG004453: protein YceG like CBSS-323097.3.peg.2594;
Cluster containing Alanyl-tRNA synthetase;
tRNA modification Bacteria
fig|6666666.229910.peg.217 CDS CP007502.1 208398 208060 -3 - 339 Nitrogen regulatory protein P-II Ammonia assimilation
fig|6666666.229910.peg.218 CDS CP007502.1 209232 208474 -3 - 759 Transcriptional regulators of sugar metabolism - none -
fig|6666666.229910.peg.219 CDS CP007502.1 209425 210330 1 + 906 D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) Polyhydroxybutyrate metabolism
fig|6666666.229910.peg.220 CDS CP007502.1 210333 211577 3 + 1245 Predicted pyridoxine biosynthesis protein (probably from glycolaldehide) - none -
fig|6666666.229910.peg.221 CDS CP007502.1 211574 212206 2 + 633 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases - none -
fig|6666666.229910.peg.222 CDS CP007502.1 212209 212985 1 + 777 Hydroxypyruvate isomerase (EC 5.3.1.22) Glycerate metabolism
fig|6666666.229910.peg.223 CDS CP007502.1 213105 212959 -3 - 147 hypothetical protein - none -
fig|6666666.229910.peg.224 CDS CP007502.1 213139 214389 1 + 1251 Lysophospholipase (EC 3.1.1.5) Triacylglycerol metabolism
fig|6666666.229910.peg.225 CDS CP007502.1 214585 215403 1 + 819 HMP-PP hydrolase (pyridoxal phosphatase) Cof, detected in genetic screen for thiamin metabolic genes (PMID:15292217) - none -
fig|6666666.229910.peg.226 CDS CP007502.1 218209 215609 -1 - 2601 DNA mismatch repair protein MutS DNA repair, bacterial MutL-MutS system;
DNA repair system including RecA, MutS and a hypothetical protein
fig|6666666.229910.peg.227 CDS CP007502.1 219109 218294 -1 - 816 hypothetical protein - none -
fig|6666666.229910.peg.228 CDS CP007502.1 219340 219191 -1 - 150 hypothetical protein - none -
fig|6666666.229910.peg.229 CDS CP007502.1 220282 219524 -1 - 759 rRNA small subunit methyltransferase J - none -
fig|6666666.229910.peg.230 CDS CP007502.1 221381 220284 -2 - 1098 tRNA (uracil(54)-C5)-methyltransferase (EC 2.1.1.35) RNA methylation;
tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229910.peg.231 CDS CP007502.1 221780 221451 -2 - 330 Protein yifE - none -
fig|6666666.229910.peg.232 CDS CP007502.1 222457 221840 -1 - 618 Periplasmic thiol:disulfide interchange protein DsbA Biogenesis of c-type cytochromes;
Periplasmic disulfide interchange
fig|6666666.229910.peg.233 CDS CP007502.1 222742 222476 -1 - 267 Protein yihD - none -
fig|6666666.229910.peg.234 CDS CP007502.1 222826 223410 1 + 585 Molybdopterin-guanine dinucleotide biosynthesis protein MobA Molybdenum cofactor biosynthesis;
ar-431-EC Molybdopterin-guanine dinucleotide biosynthesis
fig|6666666.229910.peg.235 CDS CP007502.1 223509 224039 3 + 531 ATPases involved in chromosome partitioning - none -
fig|6666666.229910.peg.236 CDS CP007502.1 224151 225680 3 + 1530 Fructose-specific phosphocarrier protein HPr (EC 2.7.1.69) / PTS system, fructose-specific IIA component (EC 2.7.1.69) Fructose utilization;
Fructose utilization
fig|6666666.229910.peg.237 CDS CP007502.1 225683 226624 2 + 942 1-phosphofructokinase (EC 2.7.1.56) Fructose utilization
fig|6666666.229910.peg.238 CDS CP007502.1 226629 228293 3 + 1665 PTS system, fructose-specific IIB component (EC 2.7.1.69) / PTS system, fructose-specific IIC component (EC 2.7.1.69) Fructose utilization;
Fructose utilization
fig|6666666.229910.peg.239 CDS CP007502.1 228569 228423 -2 - 147 hypothetical protein - none -
fig|6666666.229910.peg.240 CDS CP007502.1 228937 229488 1 + 552 NAD(P)H oxidoreductase YRKL (EC 1.6.99.-) @ Putative NADPH-quinone reductase (modulator of drug activity B) @ Flavodoxin 2 Flavodoxin;
Flavodoxin
fig|6666666.229910.peg.241 CDS CP007502.1 229528 229866 1 + 339 hypothetical protein - none -
fig|6666666.229910.peg.242 CDS CP007502.1 230012 230716 2 + 705 hypothetical protein - none -
fig|6666666.229910.peg.243 CDS CP007502.1 231158 231568 2 + 411 Preprotein translocase subunit SecE (TC 3.A.5.1.1) LSU ribosomal proteins cluster
fig|6666666.229910.peg.244 CDS CP007502.1 231570 232121 3 + 552 Transcription antitermination protein NusG LSU ribosomal proteins cluster;
Transcription factors bacterial
fig|6666666.229910.peg.245 CDS CP007502.1 232277 232705 2 + 429 LSU ribosomal protein L11p (L12e) LSU ribosomal proteins cluster
fig|6666666.229910.peg.246 CDS CP007502.1 232710 233399 3 + 690 LSU ribosomal protein L1p (L10Ae) LSU ribosomal proteins cluster
fig|6666666.229910.peg.247 CDS CP007502.1 233414 233590 2 + 177 hypothetical protein - none -
fig|6666666.229910.peg.248 CDS CP007502.1 233761 234252 1 + 492 LSU ribosomal protein L10p (P0) LSU ribosomal proteins cluster
fig|6666666.229910.peg.249 CDS CP007502.1 234304 234675 1 + 372 LSU ribosomal protein L7/L12 (P1/P2) LSU ribosomal proteins cluster
fig|6666666.229910.peg.250 CDS CP007502.1 234946 238974 1 + 4029 DNA-directed RNA polymerase beta subunit (EC 2.7.7.6) Mycobacterium virulence operon involved in DNA transcription;
RNA polymerase bacterial
fig|6666666.229910.peg.251 CDS CP007502.1 239077 243345 1 + 4269 DNA-directed RNA polymerase beta@1 subunit (EC 2.7.7.6) Mycobacterium virulence operon involved in DNA transcription;
RNA polymerase bacterial
fig|6666666.229910.peg.252 CDS CP007502.1 244369 244112 -1 - 258 SSU ribosomal protein S17p (S11e) - none -
fig|6666666.229910.peg.253 CDS CP007502.1 244560 244369 -3 - 192 LSU ribosomal protein L29p (L35e) - none -
fig|6666666.229910.peg.254 CDS CP007502.1 244970 244560 -2 - 411 LSU ribosomal protein L16p (L10e) - none -
fig|6666666.229910.peg.255 CDS CP007502.1 245691 244984 -3 - 708 SSU ribosomal protein S3p (S3e) - none -
fig|6666666.229910.peg.256 CDS CP007502.1 246040 245708 -1 - 333 LSU ribosomal protein L22p (L17e) - none -
fig|6666666.229910.peg.257 CDS CP007502.1 246260 246051 -2 - 210 SSU ribosomal protein S19p (S15e) - none -
fig|6666666.229910.peg.258 CDS CP007502.1 247173 246352 -3 - 822 LSU ribosomal protein L2p (L8e) - none -
fig|6666666.229910.peg.259 CDS CP007502.1 247496 247194 -2 - 303 LSU ribosomal protein L23p (L23Ae) - none -
fig|6666666.229910.peg.260 CDS CP007502.1 248095 247493 -1 - 603 LSU ribosomal protein L4p (L1e) - none -
fig|6666666.229910.peg.261 CDS CP007502.1 248740 248111 -1 - 630 LSU ribosomal protein L3p (L3e) - none -
fig|6666666.229910.peg.262 CDS CP007502.1 249068 248757 -2 - 312 SSU ribosomal protein S10p (S20e) - none -
fig|6666666.229910.peg.263 CDS CP007502.1 250214 249318 -2 - 897 Transcriptional regulators, LysR family - none -
fig|6666666.229910.peg.264 CDS CP007502.1 250488 251141 3 + 654 Acetyl-CoA:acetoacetyl-CoA transferase, alpha subunit (EC 2.8.3.8) - none -
fig|6666666.229910.peg.265 CDS CP007502.1 251153 251818 2 + 666 Acetyl-CoA:acetoacetyl-CoA transferase, beta subunit (EC 2.8.3.8) - none -
fig|6666666.229910.peg.266 CDS CP007502.1 251821 253164 1 + 1344 Short chain fatty acids transporter Polyhydroxybutyrate metabolism
fig|6666666.229910.peg.267 CDS CP007502.1 253182 254363 3 + 1182 Acetyl-CoA acetyltransferase (EC 2.3.1.9) Butanol Biosynthesis;
Isoprenoid Biosynthesis;
Polyhydroxybutyrate metabolism;
Serine-glyoxylate cycle
fig|6666666.229910.peg.268 CDS CP007502.1 254928 254461 -3 - 468 Transcriptional regulator, AsnC family - none -
fig|6666666.229910.peg.269 CDS CP007502.1 256548 255019 -3 - 1530 Arginine/ornithine antiporter ArcD Arginine Deiminase Pathway;
Arginine and Ornithine Degradation;
Polyamine Metabolism
fig|6666666.229910.peg.270 CDS CP007502.1 257597 256665 -2 - 933 Carbamate kinase (EC 2.7.2.2) Arginine Deiminase Pathway;
Arginine and Ornithine Degradation;
Polyamine Metabolism
fig|6666666.229910.peg.271 CDS CP007502.1 258611 257607 -2 - 1005 Ornithine carbamoyltransferase (EC 2.1.3.3) Arginine Deiminase Pathway;
Arginine and Ornithine Degradation
fig|6666666.229910.peg.272 CDS CP007502.1 258854 260245 2 + 1392 Chloride channel protein - none -
fig|6666666.229910.peg.273 CDS CP007502.1 260248 261231 1 + 984 tRNA dihydrouridine synthase A - none -
fig|6666666.229910.peg.274 CDS CP007502.1 262279 261287 -1 - 993 Aspartate--ammonia ligase (EC 6.3.1.1) CBSS-262728.1.peg.1737;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229910.peg.275 CDS CP007502.1 262445 262897 2 + 453 Regulatory protein AsnC CBSS-262728.1.peg.1737
fig|6666666.229910.peg.276 CDS CP007502.1 262931 263689 2 + 759 Uridine phosphorylase (EC 2.4.2.3) pyrimidine conversions
fig|6666666.229910.peg.277 CDS CP007502.1 264887 263826 -2 - 1062 Putative permease PerM (= YfgO) - none -
fig|6666666.229910.peg.278 CDS CP007502.1 264961 265311 1 + 351 Arsenate reductase (EC 1.20.4.1) Anaerobic respiratory reductases;
Arsenic resistance;
Transcription repair cluster
fig|6666666.229910.peg.279 CDS CP007502.1 265777 265415 -1 - 363 FIG00696564: hypothetical protein - none -
fig|6666666.229910.peg.280 CDS CP007502.1 266012 265728 -2 - 285 hypothetical protein - none -
fig|6666666.229910.peg.281 CDS CP007502.1 266221 267552 1 + 1332 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase Methylthiotransferases;
Ribosomal protein S12p Asp methylthiotransferase
fig|6666666.229910.peg.282 CDS CP007502.1 267677 268081 2 + 405 Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48) LMPTP YfkJ cluster;
Protein deglycation
fig|6666666.229910.peg.283 CDS CP007502.1 268208 268426 2 + 219 hypothetical protein - none -
fig|6666666.229910.peg.284 CDS CP007502.1 269094 268498 -3 - 597 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) G3E family of P-loop GTPases (metallocenter biosynthesis);
Peptidyl-prolyl cis-trans isomerase;
Potassium homeostasis
fig|6666666.229910.peg.285 CDS CP007502.1 269908 269189 -1 - 720 probable periplasmic protein NMA1059 - none -
fig|6666666.229910.peg.286 CDS CP007502.1 270393 269959 -3 - 435 Ribonuclease E inhibitor RraB RNA processing and degradation, bacterial
fig|6666666.229910.peg.287 CDS CP007502.1 270883 270488 -1 - 396 Large-conductance mechanosensitive channel Potassium homeostasis
fig|6666666.229910.peg.288 CDS CP007502.1 272369 270993 -2 - 1377 Trk system potassium uptake protein TrkA Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Hyperosmotic potassium uptake;
Potassium homeostasis;
Potassium homeostasis
fig|6666666.229910.peg.289 CDS CP007502.1 273748 272393 -1 - 1356 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) - none -
fig|6666666.229910.peg.290 CDS CP007502.1 274704 273748 -3 - 957 Methionyl-tRNA formyltransferase (EC 2.1.2.9) Conserved gene cluster associated with Met-tRNA formyltransferase;
Translation initiation factors bacterial
fig|6666666.229910.peg.291 CDS CP007502.1 275282 274770 -2 - 513 Peptide deformylase (EC 3.5.1.88) Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Translation termination factors bacterial
fig|6666666.229910.peg.292 CDS CP007502.1 281593 281036 -1 - 558 D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase (EC 3.1.1.-) Capsular heptose biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.229910.peg.293 CDS CP007502.1 281790 282827 3 + 1038 Methionine ABC transporter ATP-binding protein Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229910.peg.294 CDS CP007502.1 282817 283494 1 + 678 Methionine ABC transporter permease protein Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229910.peg.295 CDS CP007502.1 283529 284371 2 + 843 Methionine ABC transporter substrate-binding protein Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229910.peg.296 CDS CP007502.1 284477 284974 2 + 498 Phospholipid-binding protein - none -
fig|6666666.229910.peg.297 CDS CP007502.1 285093 285569 3 + 477 tRNA (cytidine(34)-2@1-O)-methyltransferase (EC 2.1.1.207) Biotin synthesis cluster;
RNA methylation
fig|6666666.229910.peg.298 CDS CP007502.1 286540 285665 -1 - 876 Membrane protein LAPB - none -
fig|6666666.229910.peg.299 CDS CP007502.1 286663 286550 -1 - 114 hypothetical protein - none -
fig|6666666.229910.peg.300 CDS CP007502.1 286673 287287 2 + 615 GTP-binding protein EngB Universal GTPases
fig|6666666.229910.peg.301 CDS CP007502.1 287402 288136 2 + 735 MG(2+) CHELATASE FAMILY PROTEIN CBSS-203122.12.peg.188
fig|6666666.229910.peg.302 CDS CP007502.1 288370 290019 1 + 1650 hypothetical protein - none -
fig|6666666.229910.peg.303 CDS CP007502.1 290106 289993 -3 - 114 hypothetical protein - none -
fig|6666666.229910.peg.304 CDS CP007502.1 290707 291954 1 + 1248 Ribokinase (EC 2.7.1.15) D-ribose utilization;
Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.229910.peg.305 CDS CP007502.1 294018 293191 -3 - 828 Thermostable 8-oxoguanine DNA glycosylase - none -
fig|6666666.229910.peg.306 CDS CP007502.1 294693 294034 -3 - 660 Methyltransferase - none -
fig|6666666.229910.peg.307 CDS CP007502.1 294965 300940 2 + 5976 FIG00850495: hypothetical protein - none -
fig|6666666.229910.peg.308 CDS CP007502.1 300944 301459 2 + 516 hypothetical protein - none -
fig|6666666.229910.peg.309 CDS CP007502.1 302037 302162 3 + 126 hypothetical protein - none -
fig|6666666.229910.peg.310 CDS CP007502.1 303093 302281 -3 - 813 Bll0873 protein - none -
fig|6666666.229910.peg.311 CDS CP007502.1 303685 303128 -1 - 558 Chromosome (plasmid) partitioning protein ParB Bacterial Cytoskeleton;
Cell Division Subsystem including YidCD;
RNA modification and chromosome partitioning cluster
fig|6666666.229910.peg.312 CDS CP007502.1 305498 303918 -2 - 1581 Recombinase - none -
fig|6666666.229910.peg.313 CDS CP007502.1 307741 306326 -1 - 1416 FIGfam110555 CBSS-203122.12.peg.188
fig|6666666.229910.peg.314 CDS CP007502.1 308856 307738 -3 - 1119 Mll9366 protein CBSS-203122.12.peg.188
fig|6666666.229910.peg.315 CDS CP007502.1 309707 308814 -2 - 894 TniB NTP-binding protein CBSS-203122.12.peg.188
fig|6666666.229910.peg.316 CDS CP007502.1 311626 309707 -1 - 1920 TniA putative transposase CBSS-203122.12.peg.188
fig|6666666.229910.peg.317 CDS CP007502.1 312281 311619 -2 - 663 FIGfam050825 CBSS-203122.12.peg.188
fig|6666666.229910.peg.318 CDS CP007502.1 312417 313121 3 + 705 MG(2+) CHELATASE FAMILY PROTEIN / ComM-related protein CBSS-203122.12.peg.188;
CBSS-203122.12.peg.188
fig|6666666.229910.peg.319 CDS CP007502.1 313960 313133 -1 - 828 Putative periplasmic protein YibQ, distant homology with nucleoside diphosphatase and polysaccharide deacetylase CBSS-224911.1.peg.435;
Phosphoglycerate mutase protein family
fig|6666666.229910.peg.320 CDS CP007502.1 315174 313957 -3 - 1218 Periplasmic septal ring factor with murein hydrolase activity EnvC/YibP CBSS-224911.1.peg.435;
Glutaredoxins;
Phosphoglycerate mutase protein family
fig|6666666.229910.peg.321 CDS CP007502.1 317083 315425 -1 - 1659 Phosphoglucosamine mutase (EC 5.4.2.10) Sialic Acid Metabolism;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229910.peg.322 CDS CP007502.1 317389 318072 1 + 684 Phosphoglycerate mutase (EC 5.4.2.1) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis;
Phosphoglycerate mutase protein family
fig|6666666.229910.peg.323 CDS CP007502.1 318651 318157 -3 - 495 Protein yfbU - none -
fig|6666666.229910.peg.324 CDS CP007502.1 319445 318669 -2 - 777 Nucleoside ABC transporter, periplasmic nucleoside-binding protein - none -
fig|6666666.229910.peg.325 CDS CP007502.1 321094 319511 -1 - 1584 Nickel ABC transporter, periplasmic nickel-binding protein NikA (TC 3.A.1.5.3) Transport of Nickel and Cobalt
fig|6666666.229910.peg.326 CDS CP007502.1 322491 321160 -3 - 1332 ATP-dependent hsl protease ATP-binding subunit HslU Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229910.peg.327 CDS CP007502.1 323039 322512 -2 - 528 ATP-dependent protease HslV (EC 3.4.25.-) Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229910.peg.328 CDS CP007502.1 323254 323961 1 + 708 NMN phosphatase (EC 3.1.3.5); Class B acid phosphatase precursor (EC 3.1.3.2) NAD and NADP cofactor biosynthesis global
fig|6666666.229910.peg.329 CDS CP007502.1 324660 324343 -3 - 318 hypothetical protein - none -
fig|6666666.229910.peg.330 CDS CP007502.1 326184 324940 -3 - 1245 Tryptophan-specific transport protein - none -
fig|6666666.229910.peg.331 CDS CP007502.1 326346 326873 3 + 528 Inorganic pyrophosphatase (EC 3.6.1.1) Phosphate metabolism
fig|6666666.229910.peg.332 CDS CP007502.1 326949 327722 3 + 774 Zn-dependent protease with chaperone function - none -
fig|6666666.229910.peg.333 CDS CP007502.1 328402 329046 1 + 645 3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster;
riboflavin to FAD
fig|6666666.229910.peg.334 CDS CP007502.1 330137 329133 -2 - 1005 Tryptophanyl-tRNA synthetase (EC 6.1.1.2) tRNA aminoacylation, Trp
fig|6666666.229910.peg.335 CDS CP007502.1 331673 330312 -2 - 1362 Signal recognition particle receptor protein FtsY (=alpha subunit) (TC 3.A.5.1.1) Bacterial Cell Division;
Bacterial signal recognition particle (SRP);
Universal GTPases
fig|6666666.229910.peg.336 CDS CP007502.1 331761 332345 3 + 585 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) CBSS-266117.6.peg.1260;
CBSS-269801.1.peg.1715;
RNA methylation
fig|6666666.229910.peg.337 CDS CP007502.1 332632 333597 1 + 966 PTS system, mannose-specific IIB component (EC 2.7.1.69) Mannose Metabolism;
Sialic Acid Metabolism
fig|6666666.229910.peg.338 CDS CP007502.1 333615 334412 3 + 798 PTS system, mannose-specific IIC component - none -
fig|6666666.229910.peg.339 CDS CP007502.1 334426 335262 1 + 837 PTS system, mannose-specific IID component (EC 2.7.1.69) Mannose Metabolism;
Sialic Acid Metabolism
fig|6666666.229910.peg.340 CDS CP007502.1 335372 336547 2 + 1176 Cof protein - none -
fig|6666666.229910.peg.341 CDS CP007502.1 336634 336771 1 + 138 hypothetical protein - none -
fig|6666666.229910.peg.342 CDS CP007502.1 336839 338089 2 + 1251 Na+ dependent nucleoside transporter NupC Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.229910.peg.343 CDS CP007502.1 338215 338934 1 + 720 Purine nucleoside phosphorylase (EC 2.4.2.1) Adenosyl nucleosidases;
Deoxyribose and Deoxynucleoside Catabolism;
Purine conversions;
pyrimidine conversions
fig|6666666.229910.peg.344 CDS CP007502.1 338952 339095 3 + 144 hypothetical protein - none -
fig|6666666.229910.peg.345 CDS CP007502.1 339237 341624 3 + 2388 Biofilm PGA outer membrane secretin PgaA Biofilm Adhesin Biosynthesis
fig|6666666.229910.peg.346 CDS CP007502.1 341640 343556 3 + 1917 Biofilm PGA synthesis deacetylase PgaB (EC 3.-) Biofilm Adhesin Biosynthesis
fig|6666666.229910.peg.347 CDS CP007502.1 343565 344800 2 + 1236 Biofilm PGA synthesis N-glycosyltransferase PgaC (EC 2.4.-.-) Biofilm Adhesin Biosynthesis
fig|6666666.229910.peg.348 CDS CP007502.1 344803 345096 1 + 294 AagD - none -
fig|6666666.229910.peg.349 CDS CP007502.1 345186 345064 -3 - 123 hypothetical protein - none -
fig|6666666.229910.peg.350 CDS CP007502.1 346539 345214 -3 - 1326 Hexose phosphate uptake regulatory protein UhpC - none -
fig|6666666.229910.peg.351 CDS CP007502.1 346710 347342 3 + 633 Pyridoxamine 5@1-phosphate oxidase (EC 1.4.3.5) Pyridoxin (Vitamin B6) Biosynthesis
fig|6666666.229910.peg.352 CDS CP007502.1 348074 347430 -2 - 645 hypothetical protein - none -
fig|6666666.229910.peg.353 CDS CP007502.1 349987 348587 -1 - 1401 USG protein - none -
fig|6666666.229910.peg.354 CDS CP007502.1 351347 350046 -2 - 1302 Predicted ATPase (AAA+ superfamily) - none -
fig|6666666.229910.peg.355 CDS CP007502.1 353149 351818 -1 - 1332 ATP-dependent RNA helicase SrmB - none -
fig|6666666.229910.peg.356 CDS CP007502.1 353136 353264 3 + 129 hypothetical protein - none -
fig|6666666.229910.peg.357 CDS CP007502.1 353248 353946 1 + 699 tRNA (adenine37-N(6))-methyltransferase TrmN6 (EC 2.1.1.223) RNA methylation
fig|6666666.229910.peg.358 CDS CP007502.1 354542 354021 -2 - 522 Ribosyl nicotinamide transporter, PnuC-like NAD and NADP cofactor biosynthesis global
fig|6666666.229910.peg.359 CDS CP007502.1 354709 354548 -1 - 162 Ribosyl nicotinamide transporter, PnuC-like NAD and NADP cofactor biosynthesis global
fig|6666666.229910.peg.360 CDS CP007502.1 355090 355749 1 + 660 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses;
Ribosome biogenesis bacterial;
tRNA modification Bacteria
fig|6666666.229910.peg.361 CDS CP007502.1 355898 355746 -2 - 153 hypothetical protein - none -
fig|6666666.229910.peg.362 CDS CP007502.1 356574 356068 -3 - 507 S-ribosylhomocysteine lyase (EC 4.4.1.21) / Autoinducer-2 production protein LuxS Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon);
Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229910.peg.363 CDS CP007502.1 357273 356788 -3 - 486 Putative membrane protein - none -
fig|6666666.229910.peg.364 CDS CP007502.1 357881 357276 -2 - 606 Galactoside O-acetyltransferase (EC 2.3.1.18) - none -
fig|6666666.229910.peg.365 CDS CP007502.1 358483 357881 -1 - 603 Putative phosphatase YqaB 2-phosphoglycolate salvage
fig|6666666.229910.peg.366 CDS CP007502.1 358612 358992 1 + 381 FIG00782409: hypothetical protein - none -
fig|6666666.229910.peg.367 CDS CP007502.1 361523 359508 -2 - 2016 ATP-dependent DNA helicase Rep DNA repair, bacterial UvrD and related helicases
fig|6666666.229910.peg.368 CDS CP007502.1 361763 361533 -2 - 231 FIG00696102: hypothetical protein - none -
fig|6666666.229910.peg.369 CDS CP007502.1 362430 361867 -3 - 564 Outer membrane protein 18/16 - none -
fig|6666666.229910.peg.370 CDS CP007502.1 362647 365448 1 + 2802 DNA polymerase I (EC 2.7.7.7) DNA Repair Base Excision
fig|6666666.229910.peg.371 CDS CP007502.1 365463 365585 3 + 123 hypothetical protein - none -
fig|6666666.229910.peg.372 CDS CP007502.1 365619 365759 3 + 141 hypothetical protein - none -
fig|6666666.229910.peg.373 CDS CP007502.1 365835 366182 3 + 348 hypothetical protein - none -
fig|6666666.229910.peg.374 CDS CP007502.1 368102 366288 -2 - 1815 5@1-nucleotidase (EC 3.1.3.5); NAD pyrophosphatase, periplasmic (EC 3.6.1.22) Purine conversions;
pyrimidine conversions
fig|6666666.229910.peg.375 CDS CP007502.1 368905 368129 -1 - 777 Protein HI0205 precursor - none -
fig|6666666.229910.peg.376 CDS CP007502.1 369162 369043 -3 - 120 hypothetical protein - none -
fig|6666666.229910.peg.377 CDS CP007502.1 369184 370110 1 + 927 ADP-L-glycero-D-manno-heptose-6-epimerase (EC 5.1.3.20) LOS core oligosaccharide biosynthesis
fig|6666666.229910.peg.378 CDS CP007502.1 370280 371407 2 + 1128 Fic family protein - none -
fig|6666666.229910.peg.379 CDS CP007502.1 371427 372470 3 + 1044 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) LOS core oligosaccharide biosynthesis
fig|6666666.229910.peg.380 CDS CP007502.1 372588 373796 3 + 1209 Glutathionylspermidine synthase (EC 6.3.1.8) / Glutathionylspermidine amidohydrolase (EC 3.5.1.78) Glutathionylspermidine and Trypanothione;
Glutathionylspermidine and Trypanothione
fig|6666666.229910.peg.381 CDS CP007502.1 373747 374478 1 + 732 Glutathionylspermidine synthase (EC 6.3.1.8) / Glutathionylspermidine amidohydrolase (EC 3.5.1.78) Glutathionylspermidine and Trypanothione;
Glutathionylspermidine and Trypanothione
fig|6666666.229910.peg.382 CDS CP007502.1 375199 374564 -1 - 636 Cytochrome c-type protein NapC - none -
fig|6666666.229910.peg.383 CDS CP007502.1 375662 375213 -2 - 450 Nitrate reductase cytochrome c550-type subunit - none -
fig|6666666.229910.peg.384 CDS CP007502.1 376581 375700 -3 - 882 Polyferredoxin NapH (periplasmic nitrate reductase) - none -
fig|6666666.229910.peg.385 CDS CP007502.1 377441 376581 -2 - 861 Ferredoxin-type protein NapG (periplasmic nitrate reductase) - none -
fig|6666666.229910.peg.386 CDS CP007502.1 379954 377468 -1 - 2487 Periplasmic nitrate reductase precursor (EC 1.7.99.4) - none -
fig|6666666.229910.peg.387 CDS CP007502.1 380272 379988 -1 - 285 Periplasmic nitrate reductase component NapD - none -
fig|6666666.229910.peg.388 CDS CP007502.1 380502 380338 -3 - 165 hypothetical protein - none -
fig|6666666.229910.peg.389 CDS CP007502.1 380548 382251 1 + 1704 Nitrate/nitrite sensor protein (EC 2.7.3.-) - none -
fig|6666666.229910.peg.390 CDS CP007502.1 382266 383291 3 + 1026 UDP-N-acetylenolpyruvoylglucosamine reductase (EC 1.1.1.158) Peptidoglycan Biosynthesis;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229910.peg.391 CDS CP007502.1 383307 383621 3 + 315 Uncharacterized protein conserved in bacteria - none -
fig|6666666.229910.peg.392 CDS CP007502.1 383806 384654 1 + 849 RNA polymerase sigma factor RpoH Heat shock dnaK gene cluster extended;
Transcription initiation, bacterial sigma factors
fig|6666666.229910.peg.393 CDS CP007502.1 385248 384721 -3 - 528 DNA transformation protein TfoX CBSS-83333.1.peg.946;
Orphan regulatory proteins
fig|6666666.229910.peg.394 CDS CP007502.1 387828 386644 -3 - 1185 Translation elongation factor Tu Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Translation elongation factors bacterial;
Universal GTPases
fig|6666666.229910.peg.395 CDS CP007502.1 389994 387892 -3 - 2103 Translation elongation factor G Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Translation elongation factor G family;
Translation elongation factors bacterial;
Universal GTPases
fig|6666666.229910.peg.396 CDS CP007502.1 390579 390109 -3 - 471 SSU ribosomal protein S7p (S5e) Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins)
fig|6666666.229910.peg.397 CDS CP007502.1 391106 390732 -2 - 375 SSU ribosomal protein S12p (S23e) Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Ribosomal protein S12p Asp methylthiotransferase
fig|6666666.229910.peg.398 CDS CP007502.1 391627 391328 -1 - 300 Ketol-acid reductoisomerase (EC 1.1.1.86) Coenzyme A Biosynthesis
fig|6666666.229910.peg.399 CDS CP007502.1 392259 392444 3 + 186 HTH-type transcriptional regulator IlvY Alanine biosynthesis;
LysR-family proteins in Escherichia coli;
LysR-family proteins in Salmonella enterica Typhimurium
fig|6666666.229910.peg.400 CDS CP007502.1 392477 393358 2 + 882 Protein rarD - none -
fig|6666666.229910.peg.401 CDS CP007502.1 394153 393353 -1 - 801 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) Chorismate Synthesis;
Cluster containing Alanyl-tRNA synthetase;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229910.peg.402 CDS CP007502.1 394708 394157 -1 - 552 TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA - none -
fig|6666666.229910.peg.403 CDS CP007502.1 395261 394713 -2 - 549 Similar to C-terminal Zn-finger domain of DNA topoisomerase I Conserved gene cluster associated with Met-tRNA formyltransferase;
DNA topoisomerases, Type I, ATP-independent
fig|6666666.229910.peg.404 CDS CP007502.1 395264 397018 2 + 1755 DNA recombination protein RmuC DNA repair, bacterial
fig|6666666.229910.peg.405 CDS CP007502.1 397143 397691 3 + 549 FIG00903983: hypothetical protein - none -
fig|6666666.229910.peg.406 CDS CP007502.1 397703 398029 2 + 327 Thiosulfate sulfurtransferase GlpE (EC 2.8.1.1) Single-Rhodanese-domain proteins
fig|6666666.229910.peg.407 CDS CP007502.1 398355 398041 -3 - 315 Uncharacterized protein PM1437 - none -
fig|6666666.229910.peg.408 CDS CP007502.1 398398 399273 1 + 876 GlpG protein (membrane protein of glp regulon) - none -
fig|6666666.229910.peg.409 CDS CP007502.1 399335 399841 2 + 507 Glycerol-3-phosphate regulon repressor GlpR - none -
fig|6666666.229910.peg.410 CDS CP007502.1 399808 400089 1 + 282 Glycerol-3-phosphate regulon repressor GlpR - none -
fig|6666666.229910.peg.411 CDS CP007502.1 400434 403160 3 + 2727 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229910.peg.412 CDS CP007502.1 405567 403750 -3 - 1818 ABC transporter ATP-binding protein - none -
fig|6666666.229910.peg.413 CDS CP007502.1 405691 407349 1 + 1659 Mediator of hyperadherence YidE - none -
fig|6666666.229910.peg.414 CDS CP007502.1 407448 407317 -3 - 132 hypothetical protein - none -
fig|6666666.229910.peg.415 CDS CP007502.1 407636 408220 2 + 585 Uridine monophosphate kinase (EC 2.7.4.22) CBSS-312309.3.peg.1965;
Ribosome recycling related cluster
fig|6666666.229910.peg.416 CDS CP007502.1 408288 408431 3 + 144 hypothetical protein - none -
fig|6666666.229910.peg.417 CDS CP007502.1 408445 409002 1 + 558 Ribosome recycling factor Ribosome recycling related cluster;
Translation termination factors bacterial
fig|6666666.229910.peg.418 CDS CP007502.1 409031 410314 2 + 1284 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.267) CBSS-83331.1.peg.3039;
Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.229910.peg.419 CDS CP007502.1 410336 411055 2 + 720 Undecaprenyl diphosphate synthase (EC 2.5.1.31) CBSS-83331.1.peg.3039;
Isoprenoid Biosynthesis;
Isoprenoinds for Quinones;
Polyprenyl Diphosphate Biosynthesis
fig|6666666.229910.peg.420 CDS CP007502.1 411070 411939 1 + 870 Phosphatidate cytidylyltransferase (EC 2.7.7.41) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229910.peg.421 CDS CP007502.1 411948 413282 3 + 1335 Membrane-associated zinc metalloprotease - none -
fig|6666666.229910.peg.422 CDS CP007502.1 413301 415712 3 + 2412 Outer membrane protein assembly factor YaeT precursor Lipopolysaccharide assembly;
Llipid A biosynthesis cluster
fig|6666666.229910.peg.423 CDS CP007502.1 415815 416390 3 + 576 Outer membrane chaperone Skp (OmpH) precursor @ Outer membrane protein H precursor Lipopolysaccharide assembly;
Llipid A biosynthesis cluster;
Periplasmic Stress Response
fig|6666666.229910.peg.424 CDS CP007502.1 416390 417412 2 + 1023 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC 2.3.1.191) - none -
fig|6666666.229910.peg.425 CDS CP007502.1 417549 417959 3 + 411 3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabZ form (EC 4.2.1.59) Fatty Acid Biosynthesis FASII;
Llipid A biosynthesis cluster
fig|6666666.229910.peg.426 CDS CP007502.1 417980 418768 2 + 789 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase (EC 2.3.1.129) KDO2-Lipid A biosynthesis;
Llipid A biosynthesis cluster
fig|6666666.229910.peg.427 CDS CP007502.1 418853 420037 2 + 1185 Lipid-A-disaccharide synthase (EC 2.4.1.182) KDO2-Lipid A biosynthesis;
Llipid A biosynthesis cluster
fig|6666666.229910.peg.428 CDS CP007502.1 420030 420629 3 + 600 Ribonuclease HII (EC 3.1.26.4) Conserved gene cluster associated with Met-tRNA formyltransferase;
Ribonuclease H
fig|6666666.229910.peg.429 CDS CP007502.1 420669 422105 3 + 1437 Transporter - none -
fig|6666666.229910.peg.430 CDS CP007502.1 422105 423034 2 + 930 Phosphatidate cytidylyltransferase (EC 2.7.7.41) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229910.peg.431 CDS CP007502.1 423124 423705 1 + 582 Molybdopterin biosynthesis molybdochelatase MogA Molybdenum cofactor biosynthesis
fig|6666666.229910.peg.432 CDS CP007502.1 424384 424268 -1 - 117 hypothetical protein - none -
fig|6666666.229910.peg.433 CDS CP007502.1 430905 430702 -3 - 204 Osmotically inducible lipoprotein B precursor Osmotic stress cluster
fig|6666666.229910.peg.434 CDS CP007502.1 431924 430992 -2 - 933 Biotin operon repressor / Biotin-protein ligase (EC 6.3.4.15) Biotin biosynthesis;
Biotin biosynthesis;
Biotin synthesis cluster;
Biotin synthesis cluster
fig|6666666.229910.peg.435 CDS CP007502.1 432066 433532 3 + 1467 Inosine-5@1-monophosphate dehydrogenase (EC 1.1.1.205) Purine conversions;
Purine salvage cluster
fig|6666666.229910.peg.436 CDS CP007502.1 433827 433991 3 + 165 hypothetical protein - none -
fig|6666666.229910.peg.437 CDS CP007502.1 434713 434264 -1 - 450 ImpA - none -
fig|6666666.229910.peg.438 CDS CP007502.1 435259 435894 1 + 636 DNA polymerase IV (EC 2.7.7.7) DNA repair, bacterial
fig|6666666.229910.peg.439 CDS CP007502.1 436064 436891 2 + 828 Dihydropteroate synthase (EC 2.5.1.15) Folate Biosynthesis;
Folate biosynthesis cluster
fig|6666666.229910.peg.440 CDS CP007502.1 436920 438257 3 + 1338 Phosphoglucosamine mutase (EC 5.4.2.10) Sialic Acid Metabolism;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229910.peg.441 CDS CP007502.1 438270 438737 3 + 468 Phosphohistidine phosphatase SixA - none -
fig|6666666.229910.peg.442 CDS CP007502.1 438961 439506 1 + 546 FIG00696317: hypothetical protein - none -
fig|6666666.229910.peg.443 CDS CP007502.1 440190 439528 -3 - 663 Septum site-determining protein MinC Bacterial Cell Division;
Bacterial Cytoskeleton;
Septum site-determining cluster Min
fig|6666666.229910.peg.444 CDS CP007502.1 440274 440525 3 + 252 Protein YcgL CBSS-243277.1.peg.4359
fig|6666666.229910.peg.445 CDS CP007502.1 441431 440922 -2 - 510 probable lipoprotein NlpC - none -
fig|6666666.229910.peg.446 CDS CP007502.1 442465 441611 -1 - 855 2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase (EC 2.5.1.55) A Gammaproteobacteria Cluster Relating to Translation;
KDO2-Lipid A biosynthesis
fig|6666666.229910.peg.447 CDS CP007502.1 443374 442475 -1 - 900 Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2 A Gammaproteobacteria Cluster Relating to Translation;
CBSS-216600.3.peg.802;
Translation termination factors bacterial;
YrdC-YciO-Sua5 protein family
fig|6666666.229910.peg.448 CDS CP007502.1 444496 443414 -1 - 1083 Peptide chain release factor 1 A Gammaproteobacteria Cluster Relating to Translation;
CBSS-216600.3.peg.802;
Translation termination factors bacterial;
YrdC-YciO-Sua5 protein family
fig|6666666.229910.peg.449 CDS CP007502.1 445090 444635 -1 - 456 Outer membrane lipoprotein - none -
fig|6666666.229910.peg.450 CDS CP007502.1 445719 445132 -3 - 588 Protein yecM - none -
fig|6666666.229910.peg.451 CDS CP007502.1 445816 447549 1 + 1734 Arginyl-tRNA synthetase (EC 6.1.1.19) tRNA aminoacylation, Arg
fig|6666666.229910.peg.452 CDS CP007502.1 449342 447909 -2 - 1434 Putative GTP-binding protein YdgA - none -
fig|6666666.229910.peg.453 CDS CP007502.1 449628 451529 3 + 1902 Chaperone protein DnaK GroEL GroES;
Heat shock dnaK gene cluster extended;
Protein chaperones
fig|6666666.229910.peg.454 CDS CP007502.1 451963 453090 1 + 1128 Chaperone protein DnaJ GroEL GroES;
Heat shock dnaK gene cluster extended;
Protein chaperones
fig|6666666.229910.peg.455 CDS CP007502.1 453395 453168 -2 - 228 Programmed cell death toxin ChpB - none -
fig|6666666.229910.peg.456 CDS CP007502.1 454591 453539 -1 - 1053 Outer membrane protein P2 precursor (OMP P2) - none -
fig|6666666.229910.peg.457 CDS CP007502.1 455677 454805 -1 - 873 Cystathionine beta-lyase (EC 4.4.1.8) Methionine Biosynthesis
fig|6666666.229910.peg.458 CDS CP007502.1 455994 455677 -3 - 318 Cystathionine beta-lyase (EC 4.4.1.8) Methionine Biosynthesis
fig|6666666.229910.peg.459 CDS CP007502.1 456250 456807 1 + 558 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229910.peg.460 CDS CP007502.1 458640 458080 -3 - 561 Cytolethal distending toxin subunit C Cytolethal distending toxin of Campylobacter jejuni;
Cytolethal distending toxins
fig|6666666.229910.peg.461 CDS CP007502.1 459502 458651 -1 - 852 Cytolethal distending toxin subunit B Cytolethal distending toxin of Campylobacter jejuni;
Cytolethal distending toxins
fig|6666666.229910.peg.462 CDS CP007502.1 460185 459517 -3 - 669 Cytolethal distending toxin subunit A Cytolethal distending toxin of Campylobacter jejuni;
Cytolethal distending toxins
fig|6666666.229910.peg.463 CDS CP007502.1 461098 460754 -1 - 345 Programmed cell death toxin MazF - none -
fig|6666666.229910.peg.464 CDS CP007502.1 461355 461101 -3 - 255 hypothetical protein - none -
fig|6666666.229910.peg.465 CDS CP007502.1 462645 461947 -3 - 699 NAD-dependent protein deacetylase of SIR2 family Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229910.peg.466 CDS CP007502.1 463308 462661 -3 - 648 Glutaredoxin 2 Glutaredoxins;
Glutathione: Redox cycle
fig|6666666.229910.peg.467 CDS CP007502.1 464900 463425 -2 - 1476 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) Bacterial Cell Division;
CBSS-354.1.peg.2917;
RNA processing and degradation, bacterial
fig|6666666.229910.peg.468 CDS CP007502.1 465039 466559 3 + 1521 Proline/sodium symporter PutP (TC 2.A.21.2.1) @ Propionate/sodium symporter - none -
fig|6666666.229910.peg.469 CDS CP007502.1 466573 467538 1 + 966 tRNA (5-methoxyuridine) 34 synthase tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229910.peg.470 CDS CP007502.1 467626 468924 1 + 1299 Adenylosuccinate synthetase (EC 6.3.4.4) Purine conversions
fig|6666666.229910.peg.471 CDS CP007502.1 469279 468989 -1 - 291 hypothetical protein - none -
fig|6666666.229910.peg.472 CDS CP007502.1 470285 469302 -2 - 984 DnaJ-class molecular chaperone CbpA Protein chaperones
fig|6666666.229910.peg.473 CDS CP007502.1 470573 472105 2 + 1533 GTP-binding protein EngA CBSS-290633.1.peg.1906;
CBSS-498211.3.peg.1415;
Universal GTPases
fig|6666666.229910.peg.474 CDS CP007502.1 473371 472175 -1 - 1197 Sugar efflux transporter SotB - none -
fig|6666666.229910.peg.475 CDS CP007502.1 474575 473373 -2 - 1203 FIG00696476: hypothetical protein - none -
fig|6666666.229910.peg.476 CDS CP007502.1 475160 474576 -2 - 585 Deoxycytidine triphosphate deaminase (EC 3.5.4.13) pyrimidine conversions
fig|6666666.229910.peg.477 CDS CP007502.1 475820 475170 -2 - 651 Uridine kinase (EC 2.7.1.48) [C1] pyrimidine conversions
fig|6666666.229910.peg.478 CDS CP007502.1 476129 477169 2 + 1041 Ferric iron ABC transporter, iron-binding protein Iron acquisition in Streptococcus
fig|6666666.229910.peg.479 CDS CP007502.1 477622 478374 1 + 753 Ferric iron ABC transporter, iron-binding protein Iron acquisition in Streptococcus
fig|6666666.229910.peg.480 CDS CP007502.1 478402 480459 1 + 2058 Ferric iron ABC transporter, permease protein Iron acquisition in Streptococcus
fig|6666666.229910.peg.481 CDS CP007502.1 480475 481521 1 + 1047 Fe(3+) ions import ATP-binding protein fbpC (EC 3.6.3.30) - none -
fig|6666666.229910.peg.482 CDS CP007502.1 481800 483911 3 + 2112 unknown - none -
fig|6666666.229910.peg.483 CDS CP007502.1 484764 483964 -3 - 801 Inositol-1-monophosphatase (EC 3.1.3.25) - none -
fig|6666666.229910.peg.484 CDS CP007502.1 484915 485655 1 + 741 tRNA:Cm32/Um32 methyltransferase RNA methylation;
tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229910.peg.485 CDS CP007502.1 485717 486190 2 + 474 Iron-sulfur cluster regulator IscR Alanine biosynthesis;
Rrf2 family transcriptional regulators
fig|6666666.229910.peg.486 CDS CP007502.1 486244 487458 1 + 1215 Cysteine desulfurase (EC 2.8.1.7), IscS subfamily Alanine biosynthesis;
Thiamin biosynthesis;
mnm5U34 biosynthesis bacteria;
tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229910.peg.487 CDS CP007502.1 487518 487901 3 + 384 Iron-sulfur cluster assembly scaffold protein IscU Alanine biosynthesis;
tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229910.peg.488 CDS CP007502.1 488033 488356 2 + 324 Iron binding protein IscA for iron-sulfur cluster assembly Alanine biosynthesis;
tRNA modification Bacteria
fig|6666666.229910.peg.489 CDS CP007502.1 488368 488889 1 + 522 Chaperone protein HscB Protein chaperones;
tRNA modification Bacteria
fig|6666666.229910.peg.490 CDS CP007502.1 488910 490760 3 + 1851 Chaperone protein HscA Alanine biosynthesis;
Protein chaperones;
tRNA modification Bacteria
fig|6666666.229910.peg.491 CDS CP007502.1 490772 491113 2 + 342 Ferredoxin, 2Fe-2S Alanine biosynthesis;
Soluble cytochromes and functionally related electron carriers;
tRNA modification Bacteria
fig|6666666.229910.peg.492 CDS CP007502.1 491113 491307 1 + 195 Believed to be involved in assembly of Fe-S clusters tRNA modification Bacteria
fig|6666666.229910.peg.493 CDS CP007502.1 493501 491441 -1 - 2061 Methionyl-tRNA synthetase (EC 6.1.1.10) Scaffold proteins for [4Fe-4S] cluster assembly (MRP family);
tRNA aminoacylation, Met
fig|6666666.229910.peg.494 CDS CP007502.1 493674 494786 3 + 1113 Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like Scaffold proteins for [4Fe-4S] cluster assembly (MRP family)
fig|6666666.229910.peg.495 CDS CP007502.1 494883 494764 -3 - 120 hypothetical protein - none -
fig|6666666.229910.peg.496 CDS CP007502.1 496021 494876 -1 - 1146 Beta-hexosaminidase (EC 3.2.1.52) Chitin and N-acetylglucosamine utilization
fig|6666666.229910.peg.497 CDS CP007502.1 496582 496157 -1 - 426 Nucleoside diphosphate kinase (EC 2.7.4.6) CBSS-498211.3.peg.1415;
Purine conversions;
pyrimidine conversions
fig|6666666.229910.peg.498 CDS CP007502.1 497901 496594 -3 - 1308 Peptidase B (EC 3.4.11.23) Aminopeptidases (EC 3.4.11.-)
fig|6666666.229910.peg.499 CDS CP007502.1 498121 498339 1 + 219 Translation initiation factor 1 Translation initiation factors bacterial
fig|6666666.229910.peg.500 CDS CP007502.1 499946 498402 -2 - 1545 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE Copper homeostasis: copper tolerance;
Lipoprotein Biosynthesis;
tRNA-methylthiotransferase containing cluster;
tRNA-methylthiotransferase containing cluster
fig|6666666.229910.peg.501 CDS CP007502.1 501237 500341 -3 - 897 Magnesium and cobalt efflux protein CorC CBSS-56780.10.peg.1536;
Copper homeostasis: copper tolerance;
Glycyl-tRNA synthetase containing cluster;
Magnesium transport;
tRNA-methylthiotransferase containing cluster
fig|6666666.229910.peg.502 CDS CP007502.1 501317 501445 2 + 129 hypothetical protein - none -
fig|6666666.229910.peg.503 CDS CP007502.1 501483 502490 3 + 1008 [Citrate [pro-3S]-lyase] ligase (EC 6.2.1.22) Citrate Metabolism, Transport, and Regulation
fig|6666666.229910.peg.504 CDS CP007502.1 502530 502817 3 + 288 Citrate lyase gamma chain, acyl carrier protein (EC 4.1.3.6) Citrate Metabolism, Transport, and Regulation;
TCA Cycle
fig|6666666.229910.peg.505 CDS CP007502.1 502814 503689 2 + 876 Citrate lyase beta chain (EC 4.1.3.6) Citrate Metabolism, Transport, and Regulation
fig|6666666.229910.peg.506 CDS CP007502.1 503704 505206 1 + 1503 Citrate lyase alpha chain (EC 4.1.3.6) Citrate Metabolism, Transport, and Regulation
fig|6666666.229910.peg.507 CDS CP007502.1 505484 506812 2 + 1329 2-(5@1@1-triphosphoribosyl)-3@1-dephosphocoenzyme-A synthase (EC 2.7.8.25) Citrate Metabolism, Transport, and Regulation
fig|6666666.229910.peg.508 CDS CP007502.1 506799 508139 3 + 1341 2-oxoglutarate/malate translocator - none -
fig|6666666.229910.peg.509 CDS CP007502.1 508511 510010 2 + 1500 Putative ATP /GTP binding protein - none -
fig|6666666.229910.peg.510 CDS CP007502.1 511306 510275 -1 - 1032 Aldose 1-epimerase (EC 5.1.3.3) Lactose and Galactose Uptake and Utilization;
Maltose and Maltodextrin Utilization
fig|6666666.229910.peg.511 CDS CP007502.1 512454 511300 -3 - 1155 Galactokinase (EC 2.7.1.6) Lactose and Galactose Uptake and Utilization
fig|6666666.229910.peg.512 CDS CP007502.1 513564 512521 -3 - 1044 Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10) Lactose and Galactose Uptake and Utilization
fig|6666666.229910.peg.513 CDS CP007502.1 513816 514829 3 + 1014 Galactose operon repressor, GalR-LacI family of transcriptional regulators Lactose and Galactose Uptake and Utilization
fig|6666666.229910.peg.514 CDS CP007502.1 515044 516036 1 + 993 Galactose/methyl galactoside ABC transport system, D-galactose-binding periplasmic protein MglB (TC 3.A.1.2.3) Bacterial Chemotaxis;
Lactose and Galactose Uptake and Utilization
fig|6666666.229910.peg.515 CDS CP007502.1 516111 517649 3 + 1539 Galactose/methyl galactoside ABC transport system, ATP-binding protein MglA (EC 3.6.3.17) Lactose and Galactose Uptake and Utilization
fig|6666666.229910.peg.516 CDS CP007502.1 517668 518678 3 + 1011 Galactose/methyl galactoside ABC transport system, permease protein MglC (TC 3.A.1.2.3) Lactose and Galactose Uptake and Utilization
fig|6666666.229910.peg.517 CDS CP007502.1 520599 518752 -3 - 1848 Aerobic respiration control sensor protein arcB (EC 2.7.3.-) - none -
fig|6666666.229910.peg.518 CDS CP007502.1 520625 520759 2 + 135 hypothetical protein - none -
fig|6666666.229910.peg.519 CDS CP007502.1 521960 520740 -2 - 1221 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41) Fatty Acid Biosynthesis FASII
fig|6666666.229910.peg.520 CDS CP007502.1 522130 523878 1 + 1749 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) CBSS-354.1.peg.876;
RNA methylation;
Riboflavin, FMN and FAD metabolism in plants;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229910.peg.521 CDS CP007502.1 523859 524149 2 + 291 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) CBSS-354.1.peg.876;
RNA methylation;
Riboflavin, FMN and FAD metabolism in plants;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229910.peg.522 CDS CP007502.1 524339 525076 2 + 738 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229910.peg.523 CDS CP007502.1 525161 526900 2 + 1740 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229910.peg.524 CDS CP007502.1 526988 527410 2 + 423 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229910.peg.525 CDS CP007502.1 528099 527521 -3 - 579 Heat shock protein GrpE GroEL GroES;
Heat shock dnaK gene cluster extended;
Protein chaperones
fig|6666666.229910.peg.526 CDS CP007502.1 528067 528195 1 + 129 hypothetical protein - none -
fig|6666666.229910.peg.527 CDS CP007502.1 528240 529157 3 + 918 NAD kinase (EC 2.7.1.23) NAD and NADP cofactor biosynthesis global
fig|6666666.229910.peg.528 CDS CP007502.1 529231 530907 1 + 1677 DNA repair protein RecN DNA repair, bacterial
fig|6666666.229910.peg.529 CDS CP007502.1 531572 530925 -2 - 648 Outer membrane protein W precursor - none -
fig|6666666.229910.peg.530 CDS CP007502.1 531658 531810 1 + 153 hypothetical protein - none -
fig|6666666.229910.peg.531 CDS CP007502.1 531844 532602 1 + 759 Membrane protein involved in the export of O-antigen and teichoic acid - none -
fig|6666666.229910.peg.532 CDS CP007502.1 532608 533159 3 + 552 Intracellular septation protein IspA CBSS-211586.9.peg.2729;
Intracellular septation in Enterobacteria
fig|6666666.229910.peg.533 CDS CP007502.1 533163 533633 3 + 471 Acyl-CoA thioesterase YciA, involved in membrane biogenesis CBSS-211586.9.peg.2729;
Intracellular septation in Enterobacteria
fig|6666666.229910.peg.534 CDS CP007502.1 533636 533932 2 + 297 YciL protein Broadly distributed proteins not in subsystems;
CBSS-211586.9.peg.2729
fig|6666666.229910.peg.535 CDS CP007502.1 534459 536675 3 + 2217 Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) Murein Hydrolases
fig|6666666.229910.peg.536 CDS CP007502.1 536708 537016 2 + 309 Transcriptional repressor protein TrpR Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate);
Tryptophan synthesis
fig|6666666.229910.peg.537 CDS CP007502.1 536994 537767 3 + 774 Monofunctional biosynthetic peptidoglycan transglycosylase (EC 2.4.2.-) Peptidoglycan Biosynthesis
fig|6666666.229910.peg.538 CDS CP007502.1 538278 538024 -3 - 255 hypothetical protein - none -
fig|6666666.229910.peg.539 CDS CP007502.1 539081 538860 -2 - 222 hypothetical protein - none -
fig|6666666.229910.peg.540 CDS CP007502.1 539353 539162 -1 - 192 hypothetical protein - none -
fig|6666666.229910.peg.541 CDS CP007502.1 539498 539358 -2 - 141 hypothetical protein - none -
fig|6666666.229910.peg.542 CDS CP007502.1 540450 540112 -3 - 339 Preprotein translocase subunit SecG (TC 3.A.5.1.1) CBSS-331978.3.peg.2915;
Murein hydrolase regulation and cell death
fig|6666666.229910.peg.543 CDS CP007502.1 540609 540478 -3 - 132 hypothetical protein - none -
fig|6666666.229910.peg.544 CDS CP007502.1 542560 540623 -1 - 1938 DNA topoisomerase III (EC 5.99.1.2) DNA processing cluster;
DNA topoisomerases, Type I, ATP-independent
fig|6666666.229910.peg.545 CDS CP007502.1 543194 542592 -2 - 603 Recombination protein RecR DNA processing cluster;
DNA repair, bacterial RecFOR pathway
fig|6666666.229910.peg.546 CDS CP007502.1 543722 543279 -2 - 444 FIG000557: hypothetical protein co-occurring with RecR DNA processing cluster
fig|6666666.229910.peg.547 CDS CP007502.1 543668 543823 2 + 156 hypothetical protein - none -
fig|6666666.229910.peg.548 CDS CP007502.1 543793 544863 1 + 1071 Phosphoesterase (EC 3.1.-.-) - none -
fig|6666666.229910.peg.549 CDS CP007502.1 544933 545826 1 + 894 Iron(III) dicitrate transport system, periplasmic iron-binding protein FecB (TC 3.A.1.14.1) - none -
fig|6666666.229910.peg.550 CDS CP007502.1 545826 546815 3 + 990 Iron(III) dicitrate transport system permease protein FecC (TC 3.A.1.14.1) - none -
fig|6666666.229910.peg.551 CDS CP007502.1 546815 547798 2 + 984 Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1) - none -
fig|6666666.229910.peg.552 CDS CP007502.1 547798 548565 1 + 768 Iron(III) dicitrate transport ATP-binding protein FecE (TC 3.A.1.14.1) - none -
fig|6666666.229910.peg.553 CDS CP007502.1 549602 548631 -2 - 972 Translation elongation factor P Lys34:lysine transferase Translation elongation factor P lysylation
fig|6666666.229910.peg.554 CDS CP007502.1 549666 549854 3 + 189 hypothetical protein - none -
fig|6666666.229910.peg.555 CDS CP007502.1 549910 551718 1 + 1809 Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) Serine-glyoxylate cycle;
Succinate dehydrogenase;
TCA Cycle
fig|6666666.229910.peg.556 CDS CP007502.1 551723 552493 2 + 771 Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) 5-FCL-like protein;
Serine-glyoxylate cycle;
Succinate dehydrogenase;
TCA Cycle
fig|6666666.229910.peg.557 CDS CP007502.1 552505 552897 1 + 393 Fumarate reductase subunit C Succinate dehydrogenase
fig|6666666.229910.peg.558 CDS CP007502.1 552907 553251 1 + 345 Fumarate reductase subunit D Succinate dehydrogenase
fig|6666666.229910.peg.559 CDS CP007502.1 555495 553348 -3 - 2148 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) RNA methylation
fig|6666666.229910.peg.560 CDS CP007502.1 555766 556794 1 + 1029 Alcohol dehydrogenase (EC 1.1.1.1) 5-FCL-like protein;
Butanol Biosynthesis;
Fermentations: Mixed acid;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229910.peg.561 CDS CP007502.1 558087 556873 -3 - 1215 ATPase component BioM of energizing module of biotin ECF transporter Biotin biosynthesis;
Biotin synthesis cluster;
ECF class transporters
fig|6666666.229910.peg.562 CDS CP007502.1 558910 558212 -1 - 699 Queuosine Biosynthesis QueC ATPase Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229910.peg.563 CDS CP007502.1 559081 558944 -1 - 138 Queuosine Biosynthesis QueC ATPase Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229910.peg.564 CDS CP007502.1 559265 559729 2 + 465 FIG00710847: hypothetical protein - none -
fig|6666666.229910.peg.565 CDS CP007502.1 559702 560526 1 + 825 FIG00711691: hypothetical protein - none -
fig|6666666.229910.peg.566 CDS CP007502.1 561861 561037 -3 - 825 3@1,5@1-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17) cAMP signaling in bacteria
fig|6666666.229910.peg.567 CDS CP007502.1 562535 561912 -2 - 624 ADP-ribose pyrophosphatase (EC 3.6.1.13) CBSS-216591.1.peg.168;
NAD and NADP cofactor biosynthesis global;
Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229910.peg.568 CDS CP007502.1 563461 562781 -1 - 681 FIG009095: D,D-carboxypeptidase family protein CBSS-584.1.peg.1352
fig|6666666.229910.peg.569 CDS CP007502.1 564596 563463 -2 - 1134 N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18) A Glutathione-dependent Thiol Reductase Associated with a Step in Lysine Biosynthesis;
CBSS-584.1.peg.1352;
Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229910.peg.570 CDS CP007502.1 565077 564733 -3 - 345 FIG138056: a glutathione-dependent thiol reductase A Glutathione-dependent Thiol Reductase Associated with a Step in Lysine Biosynthesis;
CBSS-584.1.peg.1352
fig|6666666.229910.peg.571 CDS CP007502.1 567023 565143 -2 - 1881 Chaperone protein HtpG Protein chaperones
fig|6666666.229910.peg.572 CDS CP007502.1 568317 567157 -3 - 1161 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) Chorismate Synthesis;
Chorismate Synthesis;
Phenylalanine and Tyrosine Branches from Chorismate;
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229910.peg.573 CDS CP007502.1 569432 568515 -2 - 918 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC 3.5.1.108) KDO2-Lipid A biosynthesis
fig|6666666.229910.peg.574 CDS CP007502.1 570753 569470 -3 - 1284 Cell division protein FtsZ (EC 3.4.24.-) Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ;
cell division core of larger cluster
fig|6666666.229910.peg.575 CDS CP007502.1 572081 570837 -2 - 1245 Cell division protein FtsA Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ;
cell division core of larger cluster
fig|6666666.229910.peg.576 CDS CP007502.1 572909 572142 -2 - 768 Cell division protein FtsQ Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ;
cell division core of larger cluster
fig|6666666.229910.peg.577 CDS CP007502.1 573835 572906 -1 - 930 D-alanine--D-alanine ligase (EC 6.3.2.4) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo;
cell division cluster containing FtsQ
fig|6666666.229910.peg.578 CDS CP007502.1 575278 573848 -1 - 1431 UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo;
cell division cluster containing FtsQ
fig|6666666.229910.peg.579 CDS CP007502.1 576413 575349 -2 - 1065 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) Peptidoglycan Biosynthesis;
cell division core of larger cluster
fig|6666666.229910.peg.580 CDS CP007502.1 577644 576454 -3 - 1191 Cell division protein FtsW Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ
fig|6666666.229910.peg.581 CDS CP007502.1 578963 577659 -2 - 1305 UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC 6.3.2.9) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo
fig|6666666.229910.peg.582 CDS CP007502.1 580075 578990 -1 - 1086 Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC 2.7.8.13) Peptidoglycan Biosynthesis
fig|6666666.229910.peg.583 CDS CP007502.1 581448 580069 -3 - 1380 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase (EC 6.3.2.10) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo
fig|6666666.229910.peg.584 CDS CP007502.1 582921 581455 -3 - 1467 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo
fig|6666666.229910.peg.585 CDS CP007502.1 584762 582939 -2 - 1824 Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129) 16S rRNA modification within P site of ribosome;
Bacterial Cell Division;
Bacterial Cytoskeleton;
CBSS-83331.1.peg.3039;
Peptidoglycan Biosynthesis
fig|6666666.229910.peg.586 CDS CP007502.1 585097 584780 -1 - 318 Cell division protein FtsL 16S rRNA modification within P site of ribosome;
Bacterial Cell Division;
Bacterial Cytoskeleton;
Stationary phase repair cluster
fig|6666666.229910.peg.587 CDS CP007502.1 586065 585097 -3 - 969 rRNA small subunit methyltransferase H 16S rRNA modification within P site of ribosome;
Bacterial Cell Division
fig|6666666.229910.peg.588 CDS CP007502.1 586633 586175 -1 - 459 Cell division protein MraZ 16S rRNA modification within P site of ribosome;
Bacterial Cell Division;
Bacterial Cytoskeleton
fig|6666666.229910.peg.589 CDS CP007502.1 588495 586897 -3 - 1599 Carbon starvation protein A Carbon Starvation
fig|6666666.229910.peg.590 CDS CP007502.1 588678 588800 3 + 123 hypothetical protein - none -
fig|6666666.229910.peg.591 CDS CP007502.1 589721 589035 -2 - 687 Arginine ABC transporter, permease protein ArtM Arginine and Ornithine Degradation
fig|6666666.229910.peg.592 CDS CP007502.1 590383 589721 -1 - 663 Arginine ABC transporter, permease protein ArtQ Arginine and Ornithine Degradation
fig|6666666.229910.peg.593 CDS CP007502.1 591107 590388 -2 - 720 Arginine ABC transporter, periplasmic arginine-binding protein ArtI Arginine and Ornithine Degradation
fig|6666666.229910.peg.594 CDS CP007502.1 591862 591128 -1 - 735 Arginine ABC transporter, ATP-binding protein ArtP Arginine and Ornithine Degradation
fig|6666666.229910.peg.595 CDS CP007502.1 592587 592003 -3 - 585 Phosphoheptose isomerase 1 (EC 5.3.1.-) Capsular heptose biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.229910.peg.596 CDS CP007502.1 596210 592689 -2 - 3522 Transcription-repair coupling factor Cell division-ribosomal stress proteins cluster;
Transcription factors bacterial;
Transcription repair cluster
fig|6666666.229910.peg.597 CDS CP007502.1 596775 596602 -3 - 174 hypothetical protein - none -
fig|6666666.229910.peg.598 CDS CP007502.1 598738 596816 -1 - 1923 Predicted P-loop ATPase fused to an acetyltransferase COG1444 tRNA modification Archaea;
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229910.peg.599 CDS CP007502.1 599443 598742 -1 - 702 unknown - none -
fig|6666666.229910.peg.600 CDS CP007502.1 600074 599610 -2 - 465 Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly CBSS-56780.10.peg.1536;
Glycyl-tRNA synthetase containing cluster;
tRNA-methylthiotransferase containing cluster
fig|6666666.229910.peg.601 CDS CP007502.1 600310 600062 -1 - 249 Phosphate starvation-inducible protein PhoH, predicted ATPase CBSS-56780.10.peg.1536;
CBSS-56780.10.peg.1536;
Glycyl-tRNA synthetase containing cluster;
Phosphate metabolism;
Phosphate metabolism;
tRNA-methylthiotransferase containing cluster;
tRNA-methylthiotransferase containing cluster
fig|6666666.229910.peg.602 CDS CP007502.1 600824 601054 2 + 231 Flp pilus assembly protein, pilin Flp Widespread colonization island
fig|6666666.229910.peg.603 CDS CP007502.1 601647 601823 3 + 177 Type IV prepilin peptidase TadV/CpaA Widespread colonization island
fig|6666666.229910.peg.604 CDS CP007502.1 601875 602699 3 + 825 Flp pilus assembly protein RcpC/CpaB Widespread colonization island
fig|6666666.229910.peg.605 CDS CP007502.1 602701 604083 1 + 1383 Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly Widespread colonization island
fig|6666666.229910.peg.606 CDS CP007502.1 604113 604583 3 + 471 Flp pilus assembly protein RcpB Widespread colonization island
fig|6666666.229910.peg.607 CDS CP007502.1 604599 605723 3 + 1125 Type II/IV secretion system ATPase TadZ/CpaE, associated with Flp pilus assembly Widespread colonization island
fig|6666666.229910.peg.608 CDS CP007502.1 605737 607017 1 + 1281 Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily Widespread colonization island
fig|6666666.229910.peg.609 CDS CP007502.1 607017 607904 3 + 888 Flp pilus assembly protein TadB Widespread colonization island
fig|6666666.229910.peg.610 CDS CP007502.1 607901 608767 2 + 867 Type II/IV secretion system protein TadC, associated with Flp pilus assembly Widespread colonization island
fig|6666666.229910.peg.611 CDS CP007502.1 608757 609518 3 + 762 Flp pilus assembly protein TadD, contains TPR repeat Widespread colonization island
fig|6666666.229910.peg.612 CDS CP007502.1 610768 612339 1 + 1572 Protein TadG, associated with Flp pilus assembly Widespread colonization island
fig|6666666.229910.peg.613 CDS CP007502.1 613545 613309 -3 - 237 Mobile element protein - none -
fig|6666666.229910.peg.614 CDS CP007502.1 613705 613589 -1 - 117 hypothetical protein - none -
fig|6666666.229910.peg.615 CDS CP007502.1 616031 614529 -2 - 1503 Sodium-dependent transporter - none -
fig|6666666.229910.peg.616 CDS CP007502.1 616447 616722 1 + 276 tRNA pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses;
tRNA modification Archaea;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229910.peg.617 CDS CP007502.1 616724 616918 2 + 195 hypothetical protein - none -
fig|6666666.229910.peg.618 CDS CP007502.1 616967 617173 2 + 207 Membrane protein, MgtC/SapB family - none -
fig|6666666.229910.peg.619 CDS CP007502.1 618114 617212 -3 - 903 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit - none -
fig|6666666.229910.peg.620 CDS CP007502.1 620019 618160 -3 - 1860 Selenocysteine-specific translation elongation factor Selenocysteine metabolism
fig|6666666.229910.peg.621 CDS CP007502.1 621410 620016 -2 - 1395 L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1) Selenocysteine metabolism
fig|6666666.229910.peg.622 CDS CP007502.1 621554 623269 2 + 1716 Prolyl-tRNA synthetase (EC 6.1.1.15), bacterial type tRNA aminoacylation, Pro
fig|6666666.229910.peg.623 CDS CP007502.1 623354 623542 2 + 189 Ethidium bromide-methyl viologen resistance protein EmrE - none -
fig|6666666.229910.peg.624 CDS CP007502.1 623582 623836 2 + 255 YgfY COG2938 - none -
fig|6666666.229910.peg.625 CDS CP007502.1 623969 624544 2 + 576 RNA polymerase sigma factor RpoE Transcription initiation, bacterial sigma factors
fig|6666666.229910.peg.626 CDS CP007502.1 624583 625167 1 + 585 Sigma factor RpoE negative regulatory protein RseA Periplasmic Stress Response;
Transcription initiation, bacterial sigma factors
fig|6666666.229910.peg.627 CDS CP007502.1 625250 626206 2 + 957 Sigma factor RpoE negative regulatory protein RseB precursor Periplasmic Stress Response;
Transcription initiation, bacterial sigma factors
fig|6666666.229910.peg.628 CDS CP007502.1 626216 626653 2 + 438 Sigma factor RpoE regulatory protein RseC Transcription initiation, bacterial sigma factors
fig|6666666.229910.peg.629 CDS CP007502.1 626734 627246 1 + 513 Molybdopterin-guanine dinucleotide biosynthesis protein MobB Molybdenum cofactor biosynthesis;
ar-431-EC Molybdopterin-guanine dinucleotide biosynthesis
fig|6666666.229910.peg.630 CDS CP007502.1 627340 628095 1 + 756 Short chain dehydrogenase - none -
fig|6666666.229910.peg.631 CDS CP007502.1 629635 628175 -1 - 1461 Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3) Dipeptidases (EC 3.4.13.-);
Recycling of Peptidoglycan Amino Acids
fig|6666666.229910.peg.632 CDS CP007502.1 629750 630214 2 + 465 Xanthine-guanine phosphoribosyltransferase (EC 2.4.2.22) Purine conversions
fig|6666666.229910.peg.633 CDS CP007502.1 632647 630305 -1 - 2343 Outer membrane protein Imp, required for envelope biogenesis / Organic solvent tolerance protein precursor Lipopolysaccharide assembly
fig|6666666.229910.peg.634 CDS CP007502.1 633273 632713 -3 - 561 DNA-3-methyladenine glycosylase (EC 3.2.2.20) CBSS-326442.4.peg.1852;
DNA Repair Base Excision
fig|6666666.229910.peg.635 CDS CP007502.1 633472 634077 1 + 606 probable integral membrane protein Cj0014c - none -
fig|6666666.229910.peg.636 CDS CP007502.1 635380 634130 -1 - 1251 Diaminopimelate decarboxylase (EC 4.1.1.20) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229910.peg.637 CDS CP007502.1 635517 635398 -3 - 120 hypothetical protein - none -
fig|6666666.229910.peg.638 CDS CP007502.1 635640 635954 3 + 315 Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly Biogenesis of cytochrome c oxidases
fig|6666666.229910.peg.639 CDS CP007502.1 635951 637840 2 + 1890 ATP-dependent DNA helicase RecQ DNA repair, bacterial RecFOR pathway
fig|6666666.229910.peg.640 CDS CP007502.1 637937 640357 2 + 2421 DNA gyrase subunit B (EC 5.99.1.3) Cell Division Subsystem including YidCD;
DNA gyrase subunits;
DNA replication cluster 1;
DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.229910.peg.641 CDS CP007502.1 641326 640412 -1 - 915 Pantothenate kinase (EC 2.7.1.33) Coenzyme A Biosynthesis
fig|6666666.229910.peg.642 CDS CP007502.1 642060 643244 3 + 1185 Translation elongation factor Tu Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Translation elongation factors bacterial;
Universal GTPases
fig|6666666.229910.peg.643 CDS CP007502.1 644255 643314 -2 - 942 Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229910.peg.644 CDS CP007502.1 644418 645260 3 + 843 Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229910.peg.645 CDS CP007502.1 645453 645905 3 + 453 Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229910.peg.646 CDS CP007502.1 645921 646391 3 + 471 Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229910.peg.647 CDS CP007502.1 646342 646950 1 + 609 Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229910.peg.648 CDS CP007502.1 646956 647588 3 + 633 L-xylulose/3-keto-L-gulonate kinase (EC 2.7.1.-) L-ascorbate utilization (and related gene clusters)
fig|6666666.229910.peg.649 CDS CP007502.1 647642 648421 2 + 780 L-xylulose/3-keto-L-gulonate kinase (EC 2.7.1.-) L-ascorbate utilization (and related gene clusters)
fig|6666666.229910.peg.650 CDS CP007502.1 650784 648469 -3 - 2316 Transcription accessory protein (S1 RNA-binding domain) CBSS-243265.1.peg.198;
Cell division-ribosomal stress proteins cluster;
Transcription factors bacterial
fig|6666666.229910.peg.651 CDS CP007502.1 651888 651001 -3 - 888 LysR family transcriptional regulator YeiE LysR-family proteins in Escherichia coli
fig|6666666.229910.peg.652 CDS CP007502.1 651998 653467 2 + 1470 Sodium-dependent transporter - none -
fig|6666666.229910.peg.653 CDS CP007502.1 653479 654078 1 + 600 Phosphoglycerate mutase (EC 5.4.2.1) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis;
Phosphoglycerate mutase protein family
fig|6666666.229910.peg.654 CDS CP007502.1 654602 654468 -2 - 135 Transcription accessory protein (S1 RNA-binding domain) CBSS-243265.1.peg.198;
Cell division-ribosomal stress proteins cluster;
Transcription factors bacterial
fig|6666666.229910.peg.655 CDS CP007502.1 654813 655295 3 + 483 Transcription elongation factor GreB CBSS-243265.1.peg.198;
Transcription factors bacterial
fig|6666666.229910.peg.656 CDS CP007502.1 655569 655378 -3 - 192 hypothetical protein - none -
fig|6666666.229910.peg.657 CDS CP007502.1 656171 655584 -2 - 588 DNA-directed RNA polymerase specialized sigma subunit, sigma24-like - none -
fig|6666666.229910.peg.658 CDS CP007502.1 656638 656357 -1 - 282 hypothetical protein - none -
fig|6666666.229910.peg.659 CDS CP007502.1 656900 657637 2 + 738 Putative preQ0 transporter Queuosine-Archaeosine Biosynthesis
fig|6666666.229910.peg.660 CDS CP007502.1 658955 657678 -2 - 1278 Uncharacterized protein EC-HemY, likely associated with heme metabolism based on gene clustering with hemC, hemD in Proteobacteria (unrelated to HemY-type PPO in GramPositives) - none -
fig|6666666.229910.peg.661 CDS CP007502.1 660353 658968 -2 - 1386 Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) Heme and Siroheme Biosynthesis
fig|6666666.229910.peg.662 CDS CP007502.1 661130 660384 -2 - 747 Uroporphyrinogen-III synthase (EC 4.2.1.75) Heme and Siroheme Biosynthesis
fig|6666666.229910.peg.663 CDS CP007502.1 662069 661143 -2 - 927 Porphobilinogen deaminase (EC 2.5.1.61) Heme and Siroheme Biosynthesis
fig|6666666.229910.peg.664 CDS CP007502.1 662225 664726 2 + 2502 Adenylate cyclase (EC 4.6.1.1) cAMP signaling in bacteria
fig|6666666.229910.peg.665 CDS CP007502.1 664736 665365 2 + 630 Nitrate/nitrite response regulator protein - none -
fig|6666666.229910.peg.666 CDS CP007502.1 665432 667291 2 + 1860 Uncharacterized protein YtfM precursor Cluster Ytf and putative sugar transporter;
Putative sugar ABC transporter (ytf cluster)
fig|6666666.229910.peg.667 CDS CP007502.1 667319 671197 2 + 3879 Uncharacterized protein YtfN Cluster Ytf and putative sugar transporter;
Putative sugar ABC transporter (ytf cluster)
fig|6666666.229910.peg.668 CDS CP007502.1 671200 672747 1 + 1548 Exopolyphosphatase (EC 3.6.1.11) Phosphate metabolism;
Polyphosphate
fig|6666666.229910.peg.669 CDS CP007502.1 674428 672812 -1 - 1617 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) CBSS-584.1.peg.3382;
Pyruvate metabolism I: anaplerotic reactions, PEP;
Serine-glyoxylate cycle
fig|6666666.229910.peg.670 CDS CP007502.1 674686 675330 1 + 645 converved hypothetical protein - none -
fig|6666666.229910.peg.671 CDS CP007502.1 675379 676269 1 + 891 NADH pyrophosphatase (EC 3.6.1.22) DNA uptake cluster;
Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229910.peg.672 CDS CP007502.1 676266 677330 3 + 1065 Uroporphyrinogen III decarboxylase (EC 4.1.1.37) Heme and Siroheme Biosynthesis
fig|6666666.229910.peg.673 CDS CP007502.1 677348 677938 2 + 591 FIG01200173: hypothetical protein - none -
fig|6666666.229910.peg.674 CDS CP007502.1 678105 678377 3 + 273 DNA-binding protein HU-alpha DNA structural proteins, bacterial;
DNA uptake cluster
fig|6666666.229910.peg.675 CDS CP007502.1 678503 679300 2 + 798 Transcriptional regulator of glmS gene, DeoR family - none -
fig|6666666.229910.peg.676 CDS CP007502.1 679355 681190 2 + 1836 Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) Sialic Acid Metabolism;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229910.peg.677 CDS CP007502.1 682407 681343 -3 - 1065 FIG01220323: hypothetical protein - none -
fig|6666666.229910.peg.678 CDS CP007502.1 682507 683397 1 + 891 Transcriptional regulator, LysR family - none -
fig|6666666.229910.peg.679 CDS CP007502.1 684645 683536 -3 - 1110 Putative exported protein precursor - none -
fig|6666666.229910.peg.680 CDS CP007502.1 685114 684782 -1 - 333 Carboxylesterase type B - none -
fig|6666666.229910.peg.681 CDS CP007502.1 686437 685382 -1 - 1056 Carboxylesterase type B - none -
fig|6666666.229910.peg.682 CDS CP007502.1 687643 686663 -1 - 981 Aldo-keto reductase - none -
fig|6666666.229910.peg.683 CDS CP007502.1 688552 687707 -1 - 846 oxidoreductase of aldo/keto reductase family, subgroup 1 - none -
fig|6666666.229910.peg.684 CDS CP007502.1 688911 689804 3 + 894 Transcriptional regulator, LysR family - none -
fig|6666666.229910.peg.685 CDS CP007502.1 690646 689882 -1 - 765 putative tetracenomycin polyketide synthesis O-methyltransferase - none -
fig|6666666.229910.peg.686 CDS CP007502.1 692534 691035 -2 - 1500 ATPase component BioM of energizing module of biotin ECF transporter Biotin biosynthesis;
Biotin synthesis cluster;
ECF class transporters
fig|6666666.229910.peg.687 CDS CP007502.1 692660 693328 2 + 669 Uncharacterized protein conserved in bacteria - none -
fig|6666666.229910.peg.688 CDS CP007502.1 693331 693804 1 + 474 UPF0225 protein YchJ Broadly distributed proteins not in subsystems
fig|6666666.229910.peg.689 CDS CP007502.1 693801 694631 3 + 831 Ribonuclease BN (EC 3.1.-.-) - none -
fig|6666666.229910.peg.690 CDS CP007502.1 694628 695062 2 + 435 D-tyrosyl-tRNA(Tyr) deacylase (EC 3.6.1.n1) - none -
fig|6666666.229910.peg.691 CDS CP007502.1 695228 696436 2 + 1209 Sodium/glutamate symport protein - none -
fig|6666666.229910.peg.692 CDS CP007502.1 697880 696492 -2 - 1389 Copper sensory histidine kinase CpxA Orphan regulatory proteins
fig|6666666.229910.peg.693 CDS CP007502.1 698620 697925 -1 - 696 Copper-sensing two-component system response regulator CpxR Orphan regulatory proteins
fig|6666666.229910.peg.694 CDS CP007502.1 699075 698662 -3 - 414 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex Lipopolysaccharide assembly
fig|6666666.229910.peg.695 CDS CP007502.1 700166 699141 -2 - 1026 Nucleoid-associated protein NdpA CBSS-211586.1.peg.1979
fig|6666666.229910.peg.696 CDS CP007502.1 700293 700517 3 + 225 FIG002927: hypothetical protein CBSS-211586.1.peg.1979
fig|6666666.229910.peg.697 CDS CP007502.1 700522 702261 1 + 1740 FIG001881: hydrolase of alkaline phosphatase superfamily CBSS-211586.1.peg.1979
fig|6666666.229910.peg.698 CDS CP007502.1 702520 703509 1 + 990 Cytosine deaminase (EC 3.5.4.1) CBSS-326442.4.peg.1852;
Creatine and Creatinine Degradation;
pyrimidine conversions
fig|6666666.229910.peg.699 CDS CP007502.1 704473 703607 -1 - 867 Nucleoside triphosphate pyrophosphohydrolase MazG (EC 3.6.1.8) Nucleoside triphosphate pyrophosphohydrolase MazG
fig|6666666.229910.peg.700 CDS CP007502.1 704583 705008 3 + 426 Universal stress protein A Universal stress protein family
fig|6666666.229910.peg.701 CDS CP007502.1 705208 707832 1 + 2625 Alanyl-tRNA synthetase (EC 6.1.1.7) Cluster containing Alanyl-tRNA synthetase;
tRNA aminoacylation, Ala
fig|6666666.229910.peg.702 CDS CP007502.1 707955 708137 3 + 183 Carbon storage regulator Carbon Starvation;
Carbon storage regulator
fig|6666666.229910.peg.703 CDS CP007502.1 708169 709533 1 + 1365 Phosphomannomutase (EC 5.4.2.8) Mannose Metabolism
fig|6666666.229910.peg.704 CDS CP007502.1 709609 710496 1 + 888 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) - none -
fig|6666666.229910.peg.705 CDS CP007502.1 710651 710968 2 + 318 Methionine repressor MetJ Methionine Biosynthesis
fig|6666666.229910.peg.706 CDS CP007502.1 711056 710925 -2 - 132 hypothetical protein - none -
fig|6666666.229910.peg.707 CDS CP007502.1 711154 711789 1 + 636 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) Cluster containing Glutathione synthetase;
Heat shock dnaK gene cluster extended;
RNA methylation
fig|6666666.229910.peg.708 CDS CP007502.1 711806 712363 2 + 558 UPF0301 protein YqgE Cluster containing Glutathione synthetase
fig|6666666.229910.peg.709 CDS CP007502.1 712363 712782 1 + 420 Putative Holliday junction resolvase YggF Cluster containing Alanyl-tRNA synthetase;
Cluster containing Glutathione synthetase
fig|6666666.229910.peg.710 CDS CP007502.1 714188 712878 -2 - 1311 Enolase (EC 4.2.1.11) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis;
Serine-glyoxylate cycle
fig|6666666.229910.peg.711 CDS CP007502.1 714373 714257 -1 - 117 hypothetical protein - none -
fig|6666666.229910.peg.712 CDS CP007502.1 715977 714826 -3 - 1152 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) CBSS-354.1.peg.876;
RNA methylation;
Riboflavin, FMN and FAD metabolism in plants;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229910.peg.713 CDS CP007502.1 716495 716238 -2 - 258 Probable exported or periplasmic protein in ApbE locus Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229910.peg.714 CDS CP007502.1 717662 716574 -2 - 1089 Thiamin biosynthesis lipoprotein ApbE - none -
fig|6666666.229910.peg.715 CDS CP007502.1 717808 717659 -1 - 150 hypothetical protein - none -
fig|6666666.229910.peg.716 CDS CP007502.1 719048 717813 -2 - 1236 Na(+)-translocating NADH-quinone reductase subunit F (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229910.peg.717 CDS CP007502.1 719656 719060 -1 - 597 Na(+)-translocating NADH-quinone reductase subunit E (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229910.peg.718 CDS CP007502.1 720289 719660 -1 - 630 Na(+)-translocating NADH-quinone reductase subunit D (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229910.peg.719 CDS CP007502.1 721074 720289 -3 - 786 Na(+)-translocating NADH-quinone reductase subunit C (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229910.peg.720 CDS CP007502.1 722302 721067 -1 - 1236 Na(+)-translocating NADH-quinone reductase subunit B (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229910.peg.721 CDS CP007502.1 723645 722305 -3 - 1341 Na(+)-translocating NADH-quinone reductase subunit A (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229910.peg.722 CDS CP007502.1 723727 723864 1 + 138 hypothetical protein - none -
fig|6666666.229910.peg.723 CDS CP007502.1 723991 723875 -1 - 117 hypothetical protein - none -
fig|6666666.229910.peg.724 CDS CP007502.1 724312 724001 -1 - 312 Cell division protein BolA Bacterial Cell Division;
CBSS-339671.5.peg.589
fig|6666666.229910.peg.725 CDS CP007502.1 724416 725009 3 + 594 Hypothetical lipoprotein YajG precursor CBSS-339671.5.peg.589
fig|6666666.229910.peg.726 CDS CP007502.1 725115 724990 -3 - 126 hypothetical protein - none -
fig|6666666.229910.peg.727 CDS CP007502.1 726589 725510 -1 - 1080 Membrane-bound lytic murein transglycosylase C precursor (EC 3.2.1.-) Murein Hydrolases
fig|6666666.229910.peg.728 CDS CP007502.1 726870 726592 -3 - 279 FIG001341: Probable Fe(2+)-trafficking protein YggX Heat shock dnaK gene cluster extended
fig|6666666.229910.peg.729 CDS CP007502.1 728038 726848 -1 - 1191 A/G-specific adenine glycosylase (EC 3.2.2.-) DNA repair, bacterial
fig|6666666.229910.peg.730 CDS CP007502.1 728204 728971 2 + 768 tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33) CBSS-83333.1.peg.2911;
RNA methylation;
tRNA modification Bacteria
fig|6666666.229910.peg.731 CDS CP007502.1 729002 729343 2 + 342 FIG002060: uncharacterized protein YggL CBSS-83333.1.peg.2911
fig|6666666.229910.peg.732 CDS CP007502.1 729562 730560 1 + 999 Ferric iron ABC transporter, iron-binding protein Iron acquisition in Streptococcus
fig|6666666.229910.peg.733 CDS CP007502.1 730641 732161 3 + 1521 Ferric iron ABC transporter, permease protein Iron acquisition in Streptococcus
fig|6666666.229910.peg.734 CDS CP007502.1 732177 733235 3 + 1059 Ferric iron ABC transporter, ATP-binding protein Iron acquisition in Streptococcus
fig|6666666.229910.peg.735 CDS CP007502.1 733807 733256 -1 - 552 tRNA-dihydrouridine synthase C (EC 1.-.-.-) Murein hydrolase regulation and cell death;
tRNA modification Bacteria
fig|6666666.229910.peg.736 CDS CP007502.1 734000 733815 -2 - 186 tRNA-dihydrouridine synthase C (EC 1.-.-.-) Murein hydrolase regulation and cell death;
tRNA modification Bacteria
fig|6666666.229910.peg.737 CDS CP007502.1 734228 734004 -2 - 225 tRNA-dihydrouridine synthase C (EC 1.-.-.-) Murein hydrolase regulation and cell death;
tRNA modification Bacteria
fig|6666666.229910.peg.738 CDS CP007502.1 735107 734232 -2 - 876 DnaJ-like protein DjlA - none -
fig|6666666.229910.peg.739 CDS CP007502.1 735833 735189 -2 - 645 Orotate phosphoribosyltransferase (EC 2.4.2.10) De Novo Pyrimidine Synthesis
fig|6666666.229910.peg.740 CDS CP007502.1 736559 735843 -2 - 717 Ribonuclease PH (EC 2.7.7.56) Heat shock dnaK gene cluster extended;
tRNA processing
fig|6666666.229910.peg.741 CDS CP007502.1 736677 737540 3 + 864 Protein YicC CBSS-323097.3.peg.2594
fig|6666666.229910.peg.742 CDS CP007502.1 737568 738455 3 + 888 Folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress - none -
fig|6666666.229910.peg.743 CDS CP007502.1 738574 738963 1 + 390 Patatin-like phospholipase - none -
fig|6666666.229910.peg.744 CDS CP007502.1 739038 739760 3 + 723 SSU ribosomal protein S2p (SAe) CBSS-312309.3.peg.1965;
Ribosome recycling related cluster
fig|6666666.229910.peg.745 CDS CP007502.1 739915 740763 1 + 849 Translation elongation factor Ts CBSS-312309.3.peg.1965;
Ribosome recycling related cluster;
Translation elongation factors bacterial
fig|6666666.229910.peg.746 CDS CP007502.1 741060 741746 3 + 687 DNA recombination and repair protein RecO CBSS-176299.4.peg.1292;
DNA repair, bacterial RecFOR pathway;
Glycyl-tRNA synthetase containing cluster
fig|6666666.229910.peg.747 CDS CP007502.1 741748 743064 1 + 1317 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) RNA methylation
fig|6666666.229910.peg.748 CDS CP007502.1 743074 745305 1 + 2232 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I CBSS-176299.4.peg.1292;
Stringent Response, (p)ppGpp metabolism
fig|6666666.229910.peg.749 CDS CP007502.1 745330 745686 1 + 357 Diacylglycerol kinase (EC 2.7.1.107) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Riboflavin synthesis cluster
fig|6666666.229910.peg.750 CDS CP007502.1 745958 746131 2 + 174 hypothetical protein - none -
fig|6666666.229910.peg.751 CDS CP007502.1 746305 746430 1 + 126 Mobile element protein - none -
fig|6666666.229910.peg.752 CDS CP007502.1 746424 746933 3 + 510 Mobile element protein - none -
fig|6666666.229910.peg.753 CDS CP007502.1 747513 747010 -3 - 504 Mercuric resistance operon regulatory protein - none -
fig|6666666.229910.peg.754 CDS CP007502.1 747852 747541 -3 - 312 Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives DNA replication cluster 1
fig|6666666.229910.peg.755 CDS CP007502.1 747819 747947 3 + 129 hypothetical protein - none -
fig|6666666.229910.peg.756 CDS CP007502.1 747944 748252 2 + 309 hypothetical protein - none -
fig|6666666.229910.peg.757 CDS CP007502.1 748271 751033 2 + 2763 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) - none -
fig|6666666.229910.peg.758 CDS CP007502.1 751110 751514 3 + 405 Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-) Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229910.peg.759 CDS CP007502.1 753040 752006 -1 - 1035 DNA polymerase III delta subunit (EC 2.7.7.7) CBSS-208964.1.peg.3988
fig|6666666.229910.peg.760 CDS CP007502.1 753543 753040 -3 - 504 LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B) CBSS-208964.1.peg.3988;
KDO2-Lipid A biosynthesis;
Lipopolysaccharide assembly
fig|6666666.229910.peg.761 CDS CP007502.1 753532 753660 1 + 129 hypothetical protein - none -
fig|6666666.229910.peg.762 CDS CP007502.1 756273 753685 -3 - 2589 Leucyl-tRNA synthetase (EC 6.1.1.4) CBSS-208964.1.peg.3988;
tRNA aminoacylation, Leu
fig|6666666.229910.peg.763 CDS CP007502.1 756421 756251 -1 - 171 hypothetical protein - none -
fig|6666666.229910.peg.764 CDS CP007502.1 756509 756393 -2 - 117 hypothetical protein - none -
fig|6666666.229910.peg.765 CDS CP007502.1 757021 756464 -1 - 558 FIG00696423: hypothetical protein - none -
fig|6666666.229910.peg.766 CDS CP007502.1 757342 757049 -1 - 294 nucleotidyltransferase - none -
fig|6666666.229910.peg.767 CDS CP007502.1 757745 757326 -2 - 420 nucleotidyltransferase substrate binding protein, HI0074 family - none -
fig|6666666.229910.peg.768 CDS CP007502.1 758663 757836 -2 - 828 Bis(5@1-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) - none -
fig|6666666.229910.peg.769 CDS CP007502.1 759542 758679 -2 - 864 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase (EC 2.1.1.182) RNA methylation;
Ribosome biogenesis bacterial
fig|6666666.229910.peg.770 CDS CP007502.1 760552 759620 -1 - 933 Survival protein SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA) (EC 5.2.1.8) Lipopolysaccharide assembly;
Peptidyl-prolyl cis-trans isomerase;
Periplasmic Stress Response
fig|6666666.229910.peg.771 CDS CP007502.1 761153 760617 -2 - 537 Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR De Novo Pyrimidine Synthesis;
De Novo Pyrimidine Synthesis;
pyrimidine conversions
fig|6666666.229910.peg.772 CDS CP007502.1 761702 761292 -2 - 411 Copper metallochaperone, bacterial analog of Cox17 protein Biogenesis of cytochrome c oxidases
fig|6666666.229910.peg.773 CDS CP007502.1 761815 762426 1 + 612 FIG002903: a protein of unknown function perhaps involved in purine metabolism CBSS-354.1.peg.876
fig|6666666.229910.peg.774 CDS CP007502.1 762450 763817 3 + 1368 Adenylosuccinate lyase (EC 4.3.2.2) CBSS-354.1.peg.876;
Purine conversions
fig|6666666.229910.peg.775 CDS CP007502.1 763933 764046 1 + 114 hypothetical protein - none -
fig|6666666.229910.peg.776 CDS CP007502.1 764039 764788 2 + 750 Sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140) - none -
fig|6666666.229910.peg.777 CDS CP007502.1 765033 764902 -3 - 132 Transcriptional regulator, MerR family Cobalt-zinc-cadmium resistance
fig|6666666.229910.peg.778 CDS CP007502.1 765309 765037 -3 - 273 Transcriptional regulator, MerR family Cobalt-zinc-cadmium resistance
fig|6666666.229910.peg.779 CDS CP007502.1 765447 766571 3 + 1125 S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) Glutathione-dependent pathway of formaldehyde detoxification
fig|6666666.229910.peg.780 CDS CP007502.1 766586 767416 2 + 831 S-formylglutathione hydrolase (EC 3.1.2.12) Glutathione-dependent pathway of formaldehyde detoxification
fig|6666666.229910.peg.781 CDS CP007502.1 767769 767903 3 + 135 hypothetical protein - none -
fig|6666666.229910.peg.782 CDS CP007502.1 769435 768056 -1 - 1380 Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1) Bacterial signal recognition particle (SRP);
Universal GTPases
fig|6666666.229910.peg.783 CDS CP007502.1 769589 770383 2 + 795 FIG001154: CcsA-related protein - none -
fig|6666666.229910.peg.784 CDS CP007502.1 770458 771720 1 + 1263 Magnesium and cobalt efflux protein CorC CBSS-56780.10.peg.1536;
Copper homeostasis: copper tolerance;
Glycyl-tRNA synthetase containing cluster;
Magnesium transport;
tRNA-methylthiotransferase containing cluster
fig|6666666.229910.peg.785 CDS CP007502.1 771895 772365 1 + 471 Ferric siderophore transport system, biopolymer transport protein ExbB Ton and Tol transport systems
fig|6666666.229910.peg.786 CDS CP007502.1 772369 772815 1 + 447 Biopolymer transport protein ExbD/TolR Ton and Tol transport systems
fig|6666666.229910.peg.787 CDS CP007502.1 772825 773583 1 + 759 Ferric siderophore transport system, periplasmic binding protein TonB Hemin transport system;
Ton and Tol transport systems
fig|6666666.229910.peg.788 CDS CP007502.1 774832 775086 1 + 255 hypothetical protein - none -
fig|6666666.229910.peg.789 CDS CP007502.1 775415 775594 2 + 180 hypothetical protein - none -
fig|6666666.229910.peg.790 CDS CP007502.1 775575 775970 3 + 396 cell filamentation-like protein - none -
fig|6666666.229910.peg.791 CDS CP007502.1 776304 776104 -3 - 201 hypothetical protein - none -
fig|6666666.229910.peg.792 CDS CP007502.1 777287 777102 -2 - 186 hypothetical protein - none -
fig|6666666.229910.peg.793 CDS CP007502.1 777667 777518 -1 - 150 hypothetical protein - none -
fig|6666666.229910.peg.794 CDS CP007502.1 778425 778565 3 + 141 hypothetical protein - none -
fig|6666666.229910.peg.795 CDS CP007502.1 778700 781120 2 + 2421 Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-) Anaerobic respiratory reductases
fig|6666666.229910.peg.796 CDS CP007502.1 781131 781748 3 + 618 Anaerobic dimethyl sulfoxide reductase chain B (EC 1.8.5.3) - none -
fig|6666666.229910.peg.797 CDS CP007502.1 781750 782589 1 + 840 Anaerobic dimethyl sulfoxide reductase chain C (EC 1.8.5.3) - none -
fig|6666666.229910.peg.798 CDS CP007502.1 782637 783251 3 + 615 Putative oxidoreductase component of anaerobic dehydrogenases; Functional role page for Chaperone protein TorD - none -
fig|6666666.229910.peg.799 CDS CP007502.1 783265 783426 1 + 162 Ferredoxin-type protein NapF (periplasmic nitrate reductase) - none -
fig|6666666.229910.peg.800 CDS CP007502.1 783618 784523 3 + 906 Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14) Glycyl-tRNA synthetase;
Glycyl-tRNA synthetase containing cluster;
tRNA aminoacylation, Gly
fig|6666666.229910.peg.801 CDS CP007502.1 784573 784833 1 + 261 Glutaredoxin-related protein Glutaredoxins
fig|6666666.229910.peg.802 CDS CP007502.1 785000 785290 2 + 291 ISSo9, nucleotidyltransferase domain protein - none -
fig|6666666.229910.peg.803 CDS CP007502.1 785381 786085 2 + 705 hypothetical protein - none -
fig|6666666.229910.peg.804 CDS CP007502.1 786167 788248 2 + 2082 Glycyl-tRNA synthetase beta chain (EC 6.1.1.14) Glycyl-tRNA synthetase;
Glycyl-tRNA synthetase containing cluster;
tRNA aminoacylation, Gly
fig|6666666.229910.peg.805 CDS CP007502.1 789482 788460 -2 - 1023 Porphobilinogen synthase (EC 4.2.1.24) Heme and Siroheme Biosynthesis
fig|6666666.229910.peg.806 CDS CP007502.1 790265 789501 -2 - 765 Twin-arginine translocation protein TatC Cluster-based Subsystem Grouping Hypotheticals - perhaps Proteosome Related;
Twin-arginine translocation system
fig|6666666.229910.peg.807 CDS CP007502.1 790965 790303 -3 - 663 Twin-arginine translocation protein TatB Twin-arginine translocation system
fig|6666666.229910.peg.808 CDS CP007502.1 791193 790969 -3 - 225 Twin-arginine translocation protein TatA Cluster-based Subsystem Grouping Hypotheticals - perhaps Proteosome Related;
Twin-arginine translocation system
fig|6666666.229910.peg.809 CDS CP007502.1 792468 791596 -3 - 873 33 kDa chaperonin (Heat shock protein 33) (HSP33) CBSS-584.1.peg.3382
fig|6666666.229910.peg.810 CDS CP007502.1 792952 792536 -1 - 417 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) CBSS-584.1.peg.3382;
Cell division-ribosomal stress proteins cluster;
DNA replication cluster 1;
Heat shock dnaK gene cluster extended
fig|6666666.229910.peg.811 CDS CP007502.1 793624 792965 -1 - 660 FIG001957: putative hydrolase CBSS-584.1.peg.3382
fig|6666666.229910.peg.812 CDS CP007502.1 793663 794253 1 + 591 ADP compounds hydrolase NudE (EC 3.6.1.-) Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229910.peg.813 CDS CP007502.1 795139 794258 -1 - 882 Transcriptional regulator, AraC family - none -
fig|6666666.229910.peg.814 CDS CP007502.1 795836 795210 -2 - 627 membrane protein ykgB - none -
fig|6666666.229910.peg.815 CDS CP007502.1 796205 798211 2 + 2007 oligopeptide transporter - none -
fig|6666666.229910.peg.816 CDS CP007502.1 798273 798701 3 + 429 hypothetical protein - none -
fig|6666666.229910.peg.817 CDS CP007502.1 798739 799548 1 + 810 3@1(2@1),5@1-bisphosphate nucleotidase (EC 3.1.3.7) - none -
fig|6666666.229910.peg.818 CDS CP007502.1 799571 801130 2 + 1560 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) Entner-Doudoroff Pathway;
Pentose phosphate pathway
fig|6666666.229910.peg.819 CDS CP007502.1 801383 802081 2 + 699 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type Entner-Doudoroff Pathway;
Pentose phosphate pathway
fig|6666666.229910.peg.820 CDS CP007502.1 802408 802671 1 + 264 hypothetical protein - none -
fig|6666666.229910.peg.821 CDS CP007502.1 802951 803643 1 + 693 Aspartate racemase (EC 5.1.1.13) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229910.peg.822 CDS CP007502.1 803656 803910 1 + 255 Glutaredoxin-related protein Glutaredoxins
fig|6666666.229910.peg.823 CDS CP007502.1 803990 804448 2 + 459 Uncharacterized virulence-associated protein D - none -
fig|6666666.229910.peg.824 CDS CP007502.1 804983 804837 -2 - 147 hypothetical protein - none -
fig|6666666.229910.peg.825 CDS CP007502.1 805004 806458 2 + 1455 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) D-gluconate and ketogluconates metabolism;
Pentose phosphate pathway
fig|6666666.229910.peg.826 CDS CP007502.1 808113 806869 -3 - 1245 FIG138576: 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229910.peg.827 CDS CP007502.1 808861 808133 -1 - 729 3-oxoacyl-[ACP] reductase (EC 1.1.1.100) Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229910.peg.828 CDS CP007502.1 809354 808911 -2 - 444 3-hydroxydecanoyl-[ACP] dehydratase (EC 4.2.1.60) Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229910.peg.829 CDS CP007502.1 810570 809347 -3 - 1224 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) FabV like Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229910.peg.830 CDS CP007502.1 811058 810579 -2 - 480 FIG085779: Lipoprotein Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229910.peg.831 CDS CP007502.1 813461 811188 -2 - 2274 FIG021862: membrane protein, exporter Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229910.peg.832 CDS CP007502.1 814052 813468 -2 - 585 FIG027190: Putative transmembrane protein Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229910.peg.833 CDS CP007502.1 814495 814049 -1 - 447 FIG002571: 4-hydroxybenzoyl-CoA thioesterase domain protein Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229910.peg.834 CDS CP007502.1 815418 814492 -3 - 927 Lysophospholipid acyltransferase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229910.peg.835 CDS CP007502.1 816137 815415 -2 - 723 FIG143263: Glycosyl transferase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229910.peg.836 CDS CP007502.1 817498 816137 -1 - 1362 FIGfam138462: Acyl-CoA synthetase, AMP-(fatty) acid ligase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229910.peg.837 CDS CP007502.1 818040 817495 -3 - 546 FIG017861: hypothetical protein Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229910.peg.838 CDS CP007502.1 819732 818065 -3 - 1668 FIGfam138462: Acyl-CoA synthetase, AMP-(fatty) acid ligase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229910.peg.839 CDS CP007502.1 819983 819732 -2 - 252 Acyl carrier protein (ACP2) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229910.peg.840 CDS CP007502.1 820249 819986 -1 - 264 Acyl carrier protein (ACP1) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229910.peg.841 CDS CP007502.1 821015 820227 -2 - 789 FIG018329: 1-acyl-sn-glycerol-3-phosphate acyltransferase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229910.peg.842 CDS CP007502.1 821743 821000 -1 - 744 3-oxoacyl-[ACP] synthase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229910.peg.843 CDS CP007502.1 822096 821773 -3 - 324 hypothetical protein - none -
fig|6666666.229910.peg.844 CDS CP007502.1 822124 822549 1 + 426 Excinuclease ATPase subunit - none -
fig|6666666.229910.peg.845 CDS CP007502.1 823363 822650 -1 - 714 Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5@1-phosphoribitylamino)uracil phosphatase Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants
fig|6666666.229910.peg.846 CDS CP007502.1 824267 823377 -2 - 891 Tyrosine recombinase XerC - none -
fig|6666666.229910.peg.847 CDS CP007502.1 825101 824277 -2 - 825 Diaminopimelate epimerase (EC 5.1.1.7) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229910.peg.848 CDS CP007502.1 825359 825180 -2 - 180 hypothetical protein - none -
fig|6666666.229910.peg.849 CDS CP007502.1 826387 825359 -1 - 1029 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) - none -
fig|6666666.229910.peg.850 CDS CP007502.1 826570 827070 1 + 501 hypothetical protein - none -
fig|6666666.229910.peg.851 CDS CP007502.1 827043 827162 3 + 120 hypothetical protein - none -
fig|6666666.229910.peg.852 CDS CP007502.1 829742 827172 -2 - 2571 ClpB protein Protein chaperones;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229910.peg.853 CDS CP007502.1 830007 830588 3 + 582 Late competence protein ComEA, DNA receptor - none -
fig|6666666.229910.peg.854 CDS CP007502.1 831773 830661 -2 - 1113 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch;
Threonine and Homoserine Biosynthesis
fig|6666666.229910.peg.855 CDS CP007502.1 832769 831957 -2 - 813 HMP-PP hydrolase (pyridoxal phosphatase) Cof, detected in genetic screen for thiamin metabolic genes (PMID:15292217) - none -
fig|6666666.229910.peg.856 CDS CP007502.1 832915 833601 1 + 687 Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy Biotin biosynthesis Experimental;
Biotin synthesis cluster;
CBSS-216591.1.peg.168
fig|6666666.229910.peg.857 CDS CP007502.1 833718 834302 3 + 585 NfuA Fe-S protein maturation Biotin biosynthesis Experimental;
DNA uptake cluster
fig|6666666.229910.peg.858 CDS CP007502.1 834650 834489 -2 - 162 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) / Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) Riboflavin synthesis cluster
fig|6666666.229910.peg.859 CDS CP007502.1 836214 834799 -3 - 1416 Branched-chain amino acid transport system carrier protein - none -
fig|6666666.229910.peg.860 CDS CP007502.1 836328 837962 3 + 1635 CTP synthase (EC 6.3.4.2) CTP synthase (EC 6.3.4.2) cluster;
pyrimidine conversions
fig|6666666.229910.peg.861 CDS CP007502.1 839362 839673 1 + 312 LSU ribosomal protein L24p (L26e) - none -
fig|6666666.229910.peg.862 CDS CP007502.1 839802 840230 3 + 429 LSU ribosomal protein L5p (L11e) - none -
fig|6666666.229910.peg.863 CDS CP007502.1 840585 840977 3 + 393 SSU ribosomal protein S8p (S15Ae) - none -
fig|6666666.229910.peg.864 CDS CP007502.1 840993 841526 3 + 534 LSU ribosomal protein L6p (L9e) - none -
fig|6666666.229910.peg.865 CDS CP007502.1 841588 841893 1 + 306 LSU ribosomal protein L18p (L5e) - none -
fig|6666666.229910.peg.866 CDS CP007502.1 841909 842409 1 + 501 SSU ribosomal protein S5p (S2e) - none -
fig|6666666.229910.peg.867 CDS CP007502.1 842599 843033 1 + 435 LSU ribosomal protein L15p (L27Ae) - none -
fig|6666666.229910.peg.868 CDS CP007502.1 843037 844362 1 + 1326 Preprotein translocase secY subunit (TC 3.A.5.1.1) - none -
fig|6666666.229910.peg.869 CDS CP007502.1 844388 844501 2 + 114 LSU ribosomal protein L36p - none -
fig|6666666.229910.peg.870 CDS CP007502.1 844643 844999 2 + 357 SSU ribosomal protein S13p (S18e) - none -
fig|6666666.229910.peg.871 CDS CP007502.1 845462 845343 -2 - 120 hypothetical protein - none -
fig|6666666.229910.peg.872 CDS CP007502.1 845434 846054 1 + 621 SSU ribosomal protein S4p (S9e) - none -
fig|6666666.229910.peg.873 CDS CP007502.1 846083 847072 2 + 990 DNA-directed RNA polymerase alpha subunit (EC 2.7.7.6) RNA polymerase bacterial
fig|6666666.229910.peg.874 CDS CP007502.1 847114 847503 1 + 390 LSU ribosomal protein L17p - none -
fig|6666666.229910.peg.875 CDS CP007502.1 849741 848512 -3 - 1230 Tyrosine-specific transport protein - none -
fig|6666666.229910.peg.876 CDS CP007502.1 850161 849871 -3 - 291 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases - none -
fig|6666666.229910.peg.877 CDS CP007502.1 850483 850124 -1 - 360 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases - none -
fig|6666666.229910.peg.878 CDS CP007502.1 851840 850569 -2 - 1272 Nicotinamide-nucleotide adenylyltransferase, NadR family (EC 2.7.7.1) / Ribosylnicotinamide kinase (EC 2.7.1.22) NAD and NADP cofactor biosynthesis global;
NAD and NADP cofactor biosynthesis global
fig|6666666.229910.peg.879 CDS CP007502.1 852405 852160 -3 - 246 tRNA 5-methylaminomethyl-2-thiouridine synthase TusA mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.229910.peg.880 CDS CP007502.1 852493 852765 1 + 273 FIG000605: protein co-occurring with transport systems (COG1739) Transport system clustering with HemG
fig|6666666.229910.peg.881 CDS CP007502.1 852796 852936 1 + 141 hypothetical protein - none -
fig|6666666.229910.peg.882 CDS CP007502.1 853031 854494 2 + 1464 Potassium uptake protein TrkH Hyperosmotic potassium uptake;
Potassium homeostasis;
Potassium homeostasis;
Transport system clustering with HemG
fig|6666666.229910.peg.883 CDS CP007502.1 854494 855006 1 + 513 Protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-) Heme and Siroheme Biosynthesis;
Transport system clustering with HemG
fig|6666666.229910.peg.884 CDS CP007502.1 860922 861149 3 + 228 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229910.peg.885 CDS CP007502.1 861227 861472 2 + 246 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229910.peg.886 CDS CP007502.1 862116 862000 -3 - 117 hypothetical protein - none -
fig|6666666.229910.peg.887 CDS CP007502.1 862256 862116 -2 - 141 hypothetical protein - none -
fig|6666666.229910.peg.888 CDS CP007502.1 862651 863280 1 + 630 Mobile element protein - none -
fig|6666666.229910.peg.889 CDS CP007502.1 863376 863960 3 + 585 Hydrolase, haloacid dehalogenase-like family - none -
fig|6666666.229910.peg.890 CDS CP007502.1 864502 864651 1 + 150 Integral membrane protein - none -
fig|6666666.229910.peg.891 CDS CP007502.1 864698 864895 2 + 198 hypothetical protein - none -
fig|6666666.229910.peg.892 CDS CP007502.1 865904 864867 -2 - 1038 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) LOS core oligosaccharide biosynthesis
fig|6666666.229910.peg.893 CDS CP007502.1 867504 866086 -3 - 1419 Aspartate ammonia-lyase (EC 4.3.1.1) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229910.peg.894 CDS CP007502.1 867734 868216 2 + 483 FxsA protein - none -
fig|6666666.229910.peg.895 CDS CP007502.1 868303 868593 1 + 291 Heat shock protein 60 family co-chaperone GroES GroEL GroES
fig|6666666.229910.peg.896 CDS CP007502.1 868714 870357 1 + 1644 Heat shock protein 60 family chaperone GroEL GroEL GroES
fig|6666666.229910.peg.897 CDS CP007502.1 871303 870446 -1 - 858 Methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5) / Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9) 5-FCL-like protein;
One-carbon metabolism by tetrahydropterines;
One-carbon metabolism by tetrahydropterines;
Serine-glyoxylate cycle;
Serine-glyoxylate cycle
fig|6666666.229910.peg.898 CDS CP007502.1 872229 871720 -3 - 510 Mobile element protein - none -
fig|6666666.229910.peg.899 CDS CP007502.1 872348 872223 -2 - 126 Mobile element protein - none -
fig|6666666.229910.peg.900 CDS CP007502.1 872695 872522 -1 - 174 hypothetical protein - none -
fig|6666666.229910.peg.901 CDS CP007502.1 875797 872966 -1 - 2832 Excinuclease ABC subunit A DNA repair, UvrABC system
fig|6666666.229910.peg.902 CDS CP007502.1 875967 876446 3 + 480 Single-stranded DNA-binding protein DNA repair, bacterial;
DNA repair, bacterial RecFOR pathway
fig|6666666.229910.peg.903 CDS CP007502.1 877406 876552 -2 - 855 Methyl-directed repair DNA adenine methylase (EC 2.1.1.72) DNA repair, bacterial
fig|6666666.229910.peg.904 CDS CP007502.1 878497 877409 -1 - 1089 3-dehydroquinate synthase (EC 4.2.3.4) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate);
Type IV pilus
fig|6666666.229910.peg.905 CDS CP007502.1 879048 878521 -3 - 528 Shikimate kinase I (EC 2.7.1.71) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229910.peg.906 CDS CP007502.1 880671 879262 -3 - 1410 Type IV pilus biogenesis protein PilQ; Competence protein E DNA uptake cluster;
Type IV pilus
fig|6666666.229910.peg.907 CDS CP007502.1 881083 880691 -1 - 393 Type IV pilus biogenesis protein PilQ; Competence protein D DNA uptake cluster;
Type IV pilus
fig|6666666.229910.peg.908 CDS CP007502.1 881607 881083 -3 - 525 Competence protein C; Chromosome segregation ATPases DNA uptake cluster
fig|6666666.229910.peg.909 CDS CP007502.1 882122 881604 -2 - 519 Type IV pilus biogenesis protein PilN; Competence protein B DNA uptake cluster;
Type IV pilus
fig|6666666.229910.peg.910 CDS CP007502.1 882942 882133 -3 - 810 Type IV pilus biogenesis protein PilM; Competence protein A DNA uptake cluster;
Type IV pilus
fig|6666666.229910.peg.911 CDS CP007502.1 883076 885643 2 + 2568 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) DNA uptake cluster;
Peptidoglycan Biosynthesis;
Type IV pilus
fig|6666666.229910.peg.912 CDS CP007502.1 885738 886583 3 + 846 Protein involved in catabolism of external DNA DNA processing cluster;
DNA uptake cluster
fig|6666666.229910.peg.913 CDS CP007502.1 886678 888048 1 + 1371 Glutathione reductase (EC 1.8.1.7) Glutathione: Redox cycle
fig|6666666.229910.peg.914 CDS CP007502.1 888825 888181 -3 - 645 Cyclic AMP receptor protein cAMP signaling in bacteria
fig|6666666.229910.peg.915 CDS CP007502.1 889081 888863 -1 - 219 FIG00696234: hypothetical protein - none -
fig|6666666.229910.peg.916 CDS CP007502.1 889704 889105 -3 - 600 Transcriptional regulator SlmA, TetR family - none -
fig|6666666.229910.peg.917 CDS CP007502.1 890159 889704 -2 - 456 Deoxyuridine 5@1-triphosphate nucleotidohydrolase (EC 3.6.1.23) Housecleaning nucleoside triphosphate pyrophosphatases;
Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229910.peg.918 CDS CP007502.1 891427 890228 -1 - 1200 Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) / Phosphopantothenoylcysteine synthetase (EC 6.3.2.5) Coenzyme A Biosynthesis;
Coenzyme A Biosynthesis
fig|6666666.229910.peg.919 CDS CP007502.1 891402 891554 3 + 153 hypothetical protein - none -
fig|6666666.229910.peg.920 CDS CP007502.1 891605 891802 2 + 198 DNA repair protein RadC DNA repair, bacterial
fig|6666666.229910.peg.921 CDS CP007502.1 892473 892219 -3 - 255 hypothetical protein - none -
fig|6666666.229910.peg.922 CDS CP007502.1 893051 893464 2 + 414 transcriptional regulatory protein - none -
fig|6666666.229910.peg.923 CDS CP007502.1 893599 893483 -1 - 117 hypothetical protein - none -
fig|6666666.229910.peg.924 CDS CP007502.1 893714 894178 2 + 465 DNA repair protein RadC DNA repair, bacterial
fig|6666666.229910.peg.925 CDS CP007502.1 894450 894623 3 + 174 LSU ribosomal protein L28p - none -
fig|6666666.229910.peg.926 CDS CP007502.1 894635 894805 2 + 171 LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-independent - none -
fig|6666666.229910.peg.927 CDS CP007502.1 894845 895702 2 + 858 Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) DNA Repair Base Excision
fig|6666666.229910.peg.928 CDS CP007502.1 896757 895705 -3 - 1053 COG0859: ADP-heptose:LPS heptosyltransferase - none -
fig|6666666.229910.peg.929 CDS CP007502.1 897789 896767 -3 - 1023 COG0859: ADP-heptose:LPS heptosyltransferase - none -
fig|6666666.229910.peg.930 CDS CP007502.1 898482 897790 -3 - 693 Beta-1,4-galactosyltransferase LOS core oligosaccharide biosynthesis
fig|6666666.229910.peg.931 CDS CP007502.1 898757 898545 -2 - 213 LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-dependent - none -
fig|6666666.229910.peg.932 CDS CP007502.1 899015 899863 2 + 849 Lipooligosaccharide biosynthesis protein lex-1 (EC 2.-.-.-) - none -
fig|6666666.229910.peg.933 CDS CP007502.1 899872 900876 1 + 1005 putative capsular polysaccharide synthesis protein - none -
fig|6666666.229910.peg.934 CDS CP007502.1 901746 900883 -3 - 864 Involved in lipopolysaccharide biosynthesis - none -
fig|6666666.229910.peg.935 CDS CP007502.1 902103 904172 3 + 2070 Helicase PriA essential for oriC/DnaA-independent DNA replication Conserved gene cluster associated with Met-tRNA formyltransferase
fig|6666666.229910.peg.936 CDS CP007502.1 904282 905094 1 + 813 Cell division protein - none -
fig|6666666.229910.peg.937 CDS CP007502.1 905294 905860 2 + 567 Probable Co/Zn/Cd efflux system membrane fusion protein Cobalt-zinc-cadmium resistance
fig|6666666.229910.peg.938 CDS CP007502.1 905886 907082 3 + 1197 Probable Co/Zn/Cd efflux system membrane fusion protein Cobalt-zinc-cadmium resistance
fig|6666666.229910.peg.939 CDS CP007502.1 907096 910194 1 + 3099 RND multidrug efflux transporter; Acriflavin resistance protein Multidrug Resistance Efflux Pumps
fig|6666666.229910.peg.940 CDS CP007502.1 910348 911148 1 + 801 Orf2 - none -
fig|6666666.229910.peg.941 CDS CP007502.1 911801 912748 2 + 948 Magnesium and cobalt transport protein CorA Magnesium transport
fig|6666666.229910.peg.942 CDS CP007502.1 912764 913324 2 + 561 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) CBSS-630.2.peg.3360
fig|6666666.229910.peg.943 CDS CP007502.1 913349 913642 2 + 294 COG1872 - none -
fig|6666666.229910.peg.944 CDS CP007502.1 913759 914418 1 + 660 Oxygen-insensitive NAD(P)H nitroreductase (EC 1.-.-.-) / Dihydropteridine reductase (EC 1.5.1.34) - none -
fig|6666666.229910.peg.945 CDS CP007502.1 914483 916456 2 + 1974 Phosphoglycerol transferase I (EC 2.7.8.20) Synthesis of osmoregulated periplasmic glucans
fig|6666666.229910.peg.946 CDS CP007502.1 917363 916626 -2 - 738 COG1496: Uncharacterized conserved protein - none -
fig|6666666.229910.peg.947 CDS CP007502.1 918339 917365 -3 - 975 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) RNA pseudouridine syntheses;
Ribosome biogenesis bacterial
fig|6666666.229910.peg.948 CDS CP007502.1 918446 919234 2 + 789 Probable component of the lipoprotein assembly complex (forms a complex with YaeT, YfgL, and NlpB) Lipopolysaccharide assembly
fig|6666666.229910.peg.949 CDS CP007502.1 919845 919270 -3 - 576 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) 5-FCL-like protein;
Folate Biosynthesis;
One-carbon metabolism by tetrahydropterines;
Serine-glyoxylate cycle
fig|6666666.229910.peg.950 CDS CP007502.1 920465 920139 -2 - 327 Z-ring-associated protein ZapA Bacterial Cytoskeleton
fig|6666666.229910.peg.951 CDS CP007502.1 920624 921172 2 + 549 FIG001590: Putative conserved exported protein precursor CBSS-87626.3.peg.3639
fig|6666666.229910.peg.952 CDS CP007502.1 921187 922488 1 + 1302 Xaa-Pro aminopeptidase (EC 3.4.11.9) Aminopeptidases (EC 3.4.11.-);
CBSS-87626.3.peg.3639
fig|6666666.229910.peg.953 CDS CP007502.1 922797 922642 -3 - 156 hypothetical protein - none -
fig|6666666.229910.peg.954 CDS CP007502.1 922983 923231 3 + 249 SSU ribosomal protein S16p - none -
fig|6666666.229910.peg.955 CDS CP007502.1 923257 923784 1 + 528 16S rRNA processing protein RimM Ribosome biogenesis bacterial
fig|6666666.229910.peg.956 CDS CP007502.1 923850 924599 3 + 750 tRNA (Guanine37-N1) -methyltransferase (EC 2.1.1.31) RNA methylation;
Ribosome biogenesis bacterial;
tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229910.peg.957 CDS CP007502.1 924625 924975 1 + 351 LSU ribosomal protein L19p - none -
fig|6666666.229910.peg.958 CDS CP007502.1 925573 925085 -1 - 489 Rod shape-determining protein MreD Bacterial Cell Division;
Bacterial Cytoskeleton;
CBSS-354.1.peg.2917
fig|6666666.229910.peg.959 CDS CP007502.1 926646 925573 -3 - 1074 Rod shape-determining protein MreC Bacterial Cell Division;
Bacterial Cytoskeleton;
CBSS-354.1.peg.2917
fig|6666666.229910.peg.960 CDS CP007502.1 927771 926716 -3 - 1056 Rod shape-determining protein MreB Bacterial Cell Division;
Bacterial Cytoskeleton
fig|6666666.229910.peg.961 CDS CP007502.1 928021 930426 1 + 2406 3@1-to-5@1 exoribonuclease RNase R RNA processing and degradation, bacterial
fig|6666666.229910.peg.962 CDS CP007502.1 930423 931160 3 + 738 23S rRNA (guanosine-2@1-O-) -methyltransferase rlmB (EC 2.1.1.-) RNA methylation
fig|6666666.229910.peg.963 CDS CP007502.1 931303 931473 1 + 171 hypothetical protein - none -
fig|6666666.229910.peg.964 CDS CP007502.1 931493 932935 2 + 1443 Glycerol-3-phosphate transporter - none -
fig|6666666.229910.peg.965 CDS CP007502.1 933169 934251 1 + 1083 Glycerophosphoryl diester phosphodiesterase, periplasmic (EC 3.1.4.46) - none -
fig|6666666.229910.peg.966 CDS CP007502.1 935426 934308 -2 - 1119 Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake CBSS-272943.3.peg.1367;
Conserved gene cluster associated with Met-tRNA formyltransferase;
YrdC-YciO-Sua5 protein family
fig|6666666.229910.peg.967 CDS CP007502.1 936095 935646 -2 - 450 LSU ribosomal protein L9p Primosomal replication protein N clusters with ribosomal proteins
fig|6666666.229910.peg.968 CDS CP007502.1 936341 936111 -2 - 231 SSU ribosomal protein S18p @ SSU ribosomal protein S18p, zinc-independent Primosomal replication protein N clusters with ribosomal proteins
fig|6666666.229910.peg.969 CDS CP007502.1 936680 936354 -2 - 327 Primosomal replication protein N Primosomal replication protein N clusters with ribosomal proteins
fig|6666666.229910.peg.970 CDS CP007502.1 937044 936667 -3 - 378 SSU ribosomal protein S6p Primosomal replication protein N clusters with ribosomal proteins
fig|6666666.229910.peg.971 CDS CP007502.1 937819 937196 -1 - 624 SOS-response repressor and protease LexA (EC 3.4.21.88) DNA repair, bacterial
fig|6666666.229910.peg.972 CDS CP007502.1 938027 940465 2 + 2439 Glycerol-3-phosphate acyltransferase (EC 2.3.1.15) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229910.peg.973 CDS CP007502.1 942350 940506 -2 - 1845 Lipid A export ATP-binding/permease protein MsbA - none -
fig|6666666.229910.peg.974 CDS CP007502.1 943355 942438 -2 - 918 transcriptional regulator MtrA - none -
fig|6666666.229910.peg.975 CDS CP007502.1 943459 943800 1 + 342 Possible carboxymuconolactone decarboxylase family protein (EC 4.1.1.44) - none -
fig|6666666.229910.peg.976 CDS CP007502.1 944940 943897 -3 - 1044 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) LOS core oligosaccharide biosynthesis
fig|6666666.229910.peg.977 CDS CP007502.1 945029 945754 2 + 726 3-deoxy-D-manno-octulosonic acid kinase (EC 2.7.1.-) - none -
fig|6666666.229910.peg.978 CDS CP007502.1 946301 945816 -2 - 486 Phosphopantetheine adenylyltransferase (EC 2.7.7.3) CBSS-266117.6.peg.1260;
CBSS-269801.1.peg.1715;
Coenzyme A Biosynthesis
fig|6666666.229910.peg.979 CDS CP007502.1 947585 946302 -2 - 1284 3-deoxy-D-manno-octulosonic-acid transferase (EC 2.-.-.-) KDO2-Lipid A biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.229910.peg.980 CDS CP007502.1 947684 948445 2 + 762 Lipopolysaccharide biosynthesis glycosyltransferase - none -
fig|6666666.229910.peg.981 CDS CP007502.1 948718 948897 1 + 180 hypothetical protein - none -
fig|6666666.229910.peg.982 CDS CP007502.1 950311 949142 -1 - 1170 Lipoprotein NlpD Stationary phase repair cluster
fig|6666666.229910.peg.983 CDS CP007502.1 950519 950328 -2 - 192 Cobalamin biosynthesis protein CobN and related Mg-chelatases - none -
fig|6666666.229910.peg.984 CDS CP007502.1 951109 950534 -1 - 576 FIG139438: lipoprotein B Stationary phase repair cluster
fig|6666666.229910.peg.985 CDS CP007502.1 951877 951137 -1 - 741 5-nucleotidase SurE (EC 3.1.3.5) @ Exopolyphosphatase (EC 3.6.1.11) Housecleaning nucleoside triphosphate pyrophosphatases;
Phosphate metabolism;
Polyphosphate;
Stationary phase repair cluster
fig|6666666.229910.peg.986 CDS CP007502.1 952920 951910 -3 - 1011 tRNA pseudouridine 13 synthase (EC 4.2.1.-) Stationary phase repair cluster;
tRNA modification Archaea;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229910.peg.987 CDS CP007502.1 953396 952917 -2 - 480 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis;
Stationary phase repair cluster
fig|6666666.229910.peg.988 CDS CP007502.1 954088 953393 -1 - 696 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC 2.7.7.60) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis;
Stationary phase repair cluster
fig|6666666.229910.peg.989 CDS CP007502.1 954366 954088 -3 - 279 Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage Bacterial Cell Division;
Bacterial Cytoskeleton;
Cell division-ribosomal stress proteins cluster;
Stationary phase repair cluster
fig|6666666.229910.peg.990 CDS CP007502.1 954518 955192 2 + 675 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) Conserved gene cluster associated with Met-tRNA formyltransferase;
Pentose phosphate pathway;
Riboflavin synthesis cluster
fig|6666666.229910.peg.991 CDS CP007502.1 955195 955869 1 + 675 Phosphoglycolate phosphatase (EC 3.1.3.18) 2-phosphoglycolate salvage;
Glycolate, glyoxylate interconversions
fig|6666666.229910.peg.992 CDS CP007502.1 956149 956799 1 + 651 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) Bacterial Cell Division
fig|6666666.229910.peg.993 CDS CP007502.1 956808 957743 3 + 936 Cell division protein FtsX Bacterial Cell Division
fig|6666666.229910.peg.994 CDS CP007502.1 958293 957877 -3 - 417 Threonine dehydratase biosynthetic (EC 4.3.1.19) - none -
fig|6666666.229910.peg.995 CDS CP007502.1 958751 958344 -2 - 408 Threonine dehydratase biosynthetic (EC 4.3.1.19) - none -
fig|6666666.229910.peg.996 CDS CP007502.1 959661 958825 -3 - 837 Acetolactate synthase large subunit (EC 2.2.1.6) - none -
fig|6666666.229910.peg.997 CDS CP007502.1 959996 960814 2 + 819 Cof protein, HD superfamily hydrolase Housecleaning nucleoside triphosphate pyrophosphatases
fig|6666666.229910.peg.998 CDS CP007502.1 961775 960852 -2 - 924 Lysophospholipase L2 (EC 3.1.1.5) Triacylglycerol metabolism
fig|6666666.229910.peg.999 CDS CP007502.1 962910 961768 -3 - 1143 O-antigen ligase LOS core oligosaccharide biosynthesis
fig|6666666.229910.peg.1000 CDS CP007502.1 962944 963105 1 + 162 hypothetical protein - none -
fig|6666666.229910.peg.1001 CDS CP007502.1 964197 963118 -3 - 1080 Fructose-bisphosphate aldolase class II (EC 4.1.2.13) Glycolysis and Gluconeogenesis
fig|6666666.229910.peg.1002 CDS CP007502.1 965425 964262 -1 - 1164 Phosphoglycerate kinase (EC 2.7.2.3) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis
fig|6666666.229910.peg.1003 CDS CP007502.1 966233 965538 -2 - 696 Probable ribonuclease HI0526 precursor - none -
fig|6666666.229910.peg.1004 CDS CP007502.1 966340 966561 1 + 222 4Fe-4S ferredoxin, iron-sulfur binding - none -
fig|6666666.229910.peg.1005 CDS CP007502.1 967703 966627 -2 - 1077 hypothetical tRNA/rRNA methyltransferase yfiF [EC:2.1.1.-] RNA methylation;
tRNA modification Bacteria
fig|6666666.229910.peg.1006 CDS CP007502.1 967889 969256 2 + 1368 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229910.peg.1007 CDS CP007502.1 969925 969296 -1 - 630 Mobile element protein - none -
fig|6666666.229910.peg.1008 CDS CP007502.1 970167 970036 -3 - 132 hypothetical protein - none -
fig|6666666.229910.peg.1009 CDS CP007502.1 971611 970706 -1 - 906 FIG00904000: hypothetical protein - none -
fig|6666666.229910.peg.1010 CDS CP007502.1 973544 972072 -2 - 1473 Xylulose kinase (EC 2.7.1.17) Xylose utilization
fig|6666666.229910.peg.1011 CDS CP007502.1 974913 973594 -3 - 1320 Xylose isomerase (EC 5.3.1.5) Xylose utilization
fig|6666666.229910.peg.1012 CDS CP007502.1 975171 976169 3 + 999 Xylose ABC transporter, periplasmic xylose-binding protein XylF Xylose utilization
fig|6666666.229910.peg.1013 CDS CP007502.1 976229 977740 2 + 1512 D-xylose transport ATP-binding protein XylG Xylose utilization
fig|6666666.229910.peg.1014 CDS CP007502.1 977744 978871 2 + 1128 Xylose ABC transporter, permease protein XylH Xylose utilization
fig|6666666.229910.peg.1015 CDS CP007502.1 978960 980156 3 + 1197 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229910.peg.1016 CDS CP007502.1 980209 981555 1 + 1347 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229910.peg.1017 CDS CP007502.1 981681 981559 -3 - 123 hypothetical protein - none -
fig|6666666.229910.peg.1018 CDS CP007502.1 981670 982842 1 + 1173 Xylose activator XylR (AraC family) Xylose utilization
fig|6666666.229910.peg.1019 CDS CP007502.1 984326 982869 -2 - 1458 Permeases of the major facilitator superfamily - none -
fig|6666666.229910.peg.1020 CDS CP007502.1 984463 984347 -1 - 117 hypothetical protein - none -
fig|6666666.229910.peg.1021 CDS CP007502.1 984612 985610 3 + 999 PTS system, mannose-specific IIA component (EC 2.7.1.69) / PTS system, mannose-specific IIB component (EC 2.7.1.69) Mannose Metabolism;
Mannose Metabolism;
Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229910.peg.1022 CDS CP007502.1 985622 986425 2 + 804 PTS system, mannose-specific IIC component (EC 2.7.1.69) Mannose Metabolism;
Sialic Acid Metabolism
fig|6666666.229910.peg.1023 CDS CP007502.1 986534 987277 2 + 744 PTS system, mannose-specific IID component - none -
fig|6666666.229910.peg.1024 CDS CP007502.1 989062 987458 -1 - 1605 Type I restriction-modification system, DNA-methyltransferase subunit M (EC 2.1.1.72) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229910.peg.1025 CDS CP007502.1 990292 989162 -1 - 1131 Type I restriction-modification system, specificity subunit S (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229910.peg.1026 CDS CP007502.1 991490 990501 -2 - 990 Putative DNA-binding protein in cluster with Type I restriction-modification system Restriction-Modification System
fig|6666666.229910.peg.1027 CDS CP007502.1 992321 991539 -2 - 783 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229910.peg.1028 CDS CP007502.1 994539 992386 -3 - 2154 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229910.peg.1029 CDS CP007502.1 994840 994688 -1 - 153 hypothetical protein - none -
fig|6666666.229910.peg.1030 CDS CP007502.1 994845 995891 3 + 1047 ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1) Polyamine Metabolism
fig|6666666.229910.peg.1031 CDS CP007502.1 996380 995952 -2 - 429 ATP synthase epsilon chain (EC 3.6.3.14) - none -
fig|6666666.229910.peg.1032 CDS CP007502.1 997795 996422 -1 - 1374 ATP synthase beta chain (EC 3.6.3.14) - none -
fig|6666666.229910.peg.1033 CDS CP007502.1 998681 997812 -2 - 870 ATP synthase gamma chain (EC 3.6.3.14) - none -
fig|6666666.229910.peg.1034 CDS CP007502.1 1000238 998697 -2 - 1542 ATP synthase alpha chain (EC 3.6.3.14) - none -
fig|6666666.229910.peg.1035 CDS CP007502.1 1000799 1000251 -2 - 549 ATP synthase delta chain (EC 3.6.3.14) - none -
fig|6666666.229910.peg.1036 CDS CP007502.1 1001283 1000813 -3 - 471 ATP synthase F0 sector subunit b - none -
fig|6666666.229910.peg.1037 CDS CP007502.1 1001587 1001333 -1 - 255 ATP synthase F0 sector subunit c (EC 3.6.3.14) - none -
fig|6666666.229910.peg.1038 CDS CP007502.1 1002429 1001641 -3 - 789 ATP synthase F0 sector subunit a - none -
fig|6666666.229910.peg.1039 CDS CP007502.1 1002831 1002454 -3 - 378 FIG048548: ATP synthase protein I2 - none -
fig|6666666.229910.peg.1040 CDS CP007502.1 1003626 1002943 -3 - 684 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB Cell Division Subsystem including YidCD;
RNA methylation;
RNA modification and chromosome partitioning cluster
fig|6666666.229910.peg.1041 CDS CP007502.1 1003981 1003619 -1 - 363 Redox-sensing transcriptional regulator QorR NADPH:quinone oxidoreductase 2
fig|6666666.229910.peg.1042 CDS CP007502.1 1004232 1004990 3 + 759 NADPH:quinone oxidoreductase 2 NADPH:quinone oxidoreductase 2
fig|6666666.229910.peg.1043 CDS CP007502.1 1007151 1005262 -3 - 1890 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA Cell Division Subsystem including YidCD;
RNA modification and chromosome partitioning cluster;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229910.peg.1044 CDS CP007502.1 1008037 1007594 -1 - 444 Flavoprotein MioC Flavodoxin
fig|6666666.229910.peg.1045 CDS CP007502.1 1008312 1008094 -3 - 219 FIG074102: hypothetical protein - none -
fig|6666666.229910.peg.1046 CDS CP007502.1 1008497 1009510 2 + 1014 Fructose-1,6-bisphosphatase, GlpX type (EC 3.1.3.11) Glycolysis and Gluconeogenesis
fig|6666666.229910.peg.1047 CDS CP007502.1 1010948 1010151 -2 - 798 Serine acetyltransferase (EC 2.3.1.30) Cysteine Biosynthesis;
Methionine Biosynthesis
fig|6666666.229910.peg.1048 CDS CP007502.1 1011964 1010951 -1 - 1014 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) Glutaredoxin 3 containing cluster;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229910.peg.1049 CDS CP007502.1 1012554 1012042 -3 - 513 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) Glutaredoxin 3 containing cluster
fig|6666666.229910.peg.1050 CDS CP007502.1 1012992 1012570 -3 - 423 FIG136845: Rhodanese-related sulfurtransferase Glutaredoxin 3 containing cluster
fig|6666666.229910.peg.1051 CDS CP007502.1 1013338 1014660 1 + 1323 Anaerobic C4-dicarboxylate membrane transporter DcuA - none -
fig|6666666.229910.peg.1052 CDS CP007502.1 1014829 1016577 1 + 1749 Transport ATP-binding protein CydD Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229910.peg.1053 CDS CP007502.1 1016594 1018228 2 + 1635 ABC transporter ATP-binding protein - none -
fig|6666666.229910.peg.1054 CDS CP007502.1 1018960 1018340 -1 - 621 Unsaturated fatty acid biosythesis repressor FabR, TetR family - none -
fig|6666666.229910.peg.1055 CDS CP007502.1 1019871 1018972 -3 - 900 Hydrogen peroxide-inducible genes activator LysR-family proteins in Escherichia coli;
LysR-family proteins in Salmonella enterica Typhimurium;
Oxidative stress;
Thioredoxin-disulfide reductase
fig|6666666.229910.peg.1056 CDS CP007502.1 1020030 1020758 3 + 729 Peroxiredoxin family protein/glutaredoxin - none -
fig|6666666.229910.peg.1057 CDS CP007502.1 1021034 1020819 -2 - 216 Protein SlyX - none -
fig|6666666.229910.peg.1058 CDS CP007502.1 1021129 1021854 1 + 726 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase;
Potassium homeostasis
fig|6666666.229910.peg.1059 CDS CP007502.1 1021934 1022602 2 + 669 YheO-like PAS domain - none -
fig|6666666.229910.peg.1060 CDS CP007502.1 1022606 1022983 2 + 378 tRNA 5-methylaminomethyl-2-thiouridine synthase TusD CBSS-326442.4.peg.1852;
Sulfite reduction-associated complex DsrMKJOP and co-clustering genes;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.229910.peg.1061 CDS CP007502.1 1022980 1023342 1 + 363 tRNA 5-methylaminomethyl-2-thiouridine synthase TusC CBSS-326442.4.peg.1852;
Sulfite reduction-associated complex DsrMKJOP and co-clustering genes;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.229910.peg.1062 CDS CP007502.1 1023345 1023632 3 + 288 tRNA 5-methylaminomethyl-2-thiouridine synthase TusB Sulfite reduction-associated complex DsrMKJOP and co-clustering genes;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.229910.peg.1063 CDS CP007502.1 1024404 1023637 -3 - 768 ABC-type polar amino acid transport system, ATPase component CBSS-326442.4.peg.1852
fig|6666666.229910.peg.1064 CDS CP007502.1 1025097 1024414 -3 - 684 ABC-type amino acid transport system, permease component - none -
fig|6666666.229910.peg.1065 CDS CP007502.1 1025899 1025120 -1 - 780 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain - none -
fig|6666666.229910.peg.1066 CDS CP007502.1 1027320 1026025 -3 - 1296 Glycine/D-amino acid oxidases (deaminating) - none -
fig|6666666.229910.peg.1067 CDS CP007502.1 1028809 1027445 -1 - 1365 lipoprotein, putative - none -
fig|6666666.229910.peg.1068 CDS CP007502.1 1029517 1030641 1 + 1125 RelA/SpoT domain protein - none -
fig|6666666.229910.peg.1069 CDS CP007502.1 1031667 1030753 -3 - 915 N-acetylmuramic acid 6-phosphate etherase - none -
fig|6666666.229910.peg.1070 CDS CP007502.1 1032794 1031664 -2 - 1131 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) Recycling of Peptidoglycan Amino Sugars
fig|6666666.229910.peg.1071 CDS CP007502.1 1032934 1034250 1 + 1317 N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23) / Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157) Peptidoglycan Biosynthesis;
Peptidoglycan Biosynthesis;
Sialic Acid Metabolism;
Sialic Acid Metabolism;
Transcription repair cluster;
Transcription repair cluster;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229910.peg.1072 CDS CP007502.1 1035493 1034402 -1 - 1092 Putative exported protein precursor - none -
fig|6666666.229910.peg.1073 CDS CP007502.1 1036380 1035631 -3 - 750 Deoxyribose operon repressor, DeoR family Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.229910.peg.1074 CDS CP007502.1 1037079 1036408 -3 - 672 Deoxyribose-phosphate aldolase (EC 4.1.2.4) Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.229910.peg.1075 CDS CP007502.1 1037940 1037581 -3 - 360 Mobile element protein - none -
fig|6666666.229910.peg.1076 CDS CP007502.1 1038352 1038173 -1 - 180 Integrase - none -
fig|6666666.229910.peg.1077 CDS CP007502.1 1039360 1039130 -1 - 231 hypothetical protein - none -
fig|6666666.229910.peg.1078 CDS CP007502.1 1042092 1039357 -3 - 2736 Putative uncharacterized protein ydbH - none -
fig|6666666.229910.peg.1079 CDS CP007502.1 1042815 1042198 -3 - 618 Multiple antibiotic resistance protein marC - none -
fig|6666666.229910.peg.1080 CDS CP007502.1 1042896 1044386 3 + 1491 Glutathione-regulated potassium-efflux system ATP-binding protein Potassium homeostasis
fig|6666666.229910.peg.1081 CDS CP007502.1 1044358 1044822 1 + 465 Glutathione-regulated potassium-efflux system ATP-binding protein Potassium homeostasis
fig|6666666.229910.peg.1082 CDS CP007502.1 1044970 1046028 1 + 1059 RecA protein DNA repair, bacterial;
DNA repair, bacterial RecFOR pathway;
DNA repair system including RecA, MutS and a hypothetical protein;
RecA and RecX
fig|6666666.229910.peg.1083 CDS CP007502.1 1046110 1046568 1 + 459 Regulatory protein RecX DNA repair system including RecA, MutS and a hypothetical protein;
RecA and RecX
fig|6666666.229910.peg.1084 CDS CP007502.1 1046645 1047034 2 + 390 Endoribonuclease L-PSP - none -
fig|6666666.229910.peg.1085 CDS CP007502.1 1049103 1047106 -3 - 1998 Transketolase (EC 2.2.1.1) Pentose phosphate pathway
fig|6666666.229910.peg.1086 CDS CP007502.1 1050189 1049236 -3 - 954 Transaldolase (EC 2.2.1.2) Fructose utilization;
Pentose phosphate pathway
fig|6666666.229910.peg.1087 CDS CP007502.1 1056992 1056174 -2 - 819 Peptide transport system ATP-binding protein SapF - none -
fig|6666666.229910.peg.1088 CDS CP007502.1 1058048 1056996 -2 - 1053 Peptide transport system ATP-binding protein SapD - none -
fig|6666666.229910.peg.1089 CDS CP007502.1 1058943 1058056 -3 - 888 Peptide transport system permease protein SapC - none -
fig|6666666.229910.peg.1090 CDS CP007502.1 1059898 1058933 -1 - 966 Peptide transport system permease protein SapB - none -
fig|6666666.229910.peg.1091 CDS CP007502.1 1061529 1059898 -3 - 1632 Peptide transport periplasmic protein sapA (TC 3.A.1.5.5) - none -
fig|6666666.229910.peg.1092 CDS CP007502.1 1061795 1063210 2 + 1416 Conserved protein YcjX with nucleoside triphosphate hydrolase domain A conserved operon linked to TyrR and possibly involved in virulence
fig|6666666.229910.peg.1093 CDS CP007502.1 1063224 1064303 3 + 1080 Membrane protein YcjF A conserved operon linked to TyrR and possibly involved in virulence
fig|6666666.229910.peg.1094 CDS CP007502.1 1064387 1065346 2 + 960 Transcriptional repressor protein TyrR Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate);
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229910.peg.1095 CDS CP007502.1 1065477 1065343 -3 - 135 hypothetical protein - none -
fig|6666666.229910.peg.1096 CDS CP007502.1 1065711 1065562 -3 - 150 GTP-binding protein HflX Hfl operon;
Universal GTPases
fig|6666666.229910.peg.1097 CDS CP007502.1 1066025 1065726 -2 - 300 RNA-binding protein Hfq Hfl operon;
Polyadenylation bacterial
fig|6666666.229910.peg.1098 CDS CP007502.1 1067088 1066144 -3 - 945 tRNA dimethylallyltransferase (EC 2.5.1.75) tRNA modification Bacteria;
tRNA processing
fig|6666666.229910.peg.1099 CDS CP007502.1 1068953 1067103 -2 - 1851 DNA mismatch repair protein MutL DNA repair, bacterial MutL-MutS system
fig|6666666.229910.peg.1100 CDS CP007502.1 1070440 1068953 -1 - 1488 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) Murein Hydrolases;
Recycling of Peptidoglycan Amino Acids
fig|6666666.229910.peg.1101 CDS CP007502.1 1070889 1070437 -3 - 453 TsaE protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA Scaffold proteins for [4Fe-4S] cluster assembly (MRP family);
YjeE;
YrdC-YciO-Sua5 protein family
fig|6666666.229910.peg.1102 CDS CP007502.1 1070906 1071034 2 + 129 hypothetical protein - none -
fig|6666666.229910.peg.1103 CDS CP007502.1 1072880 1071087 -2 - 1794 Mlr4739 protein - none -
fig|6666666.229910.peg.1104 CDS CP007502.1 1074188 1073268 -2 - 921 RfbJ protein - none -
fig|6666666.229910.peg.1105 CDS CP007502.1 1075704 1074196 -3 - 1509 putative integral membrane protein - none -
fig|6666666.229910.peg.1106 CDS CP007502.1 1076308 1075691 -1 - 618 Glycerate kinase (EC 2.7.1.31) D-galactarate, D-glucarate and D-glycerate catabolism;
D-galactarate, D-glucarate and D-glycerate catabolism - gjo;
Glycerate metabolism;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Glycine and Serine Utilization;
Serine-glyoxylate cycle
fig|6666666.229910.peg.1107 CDS CP007502.1 1077851 1076337 -2 - 1515 Dca - none -
fig|6666666.229910.peg.1108 CDS CP007502.1 1078918 1078370 -1 - 549 3@1-to-5@1 oligoribonuclease (orn) RNA processing and degradation, bacterial
fig|6666666.229910.peg.1109 CDS CP007502.1 1078989 1080029 3 + 1041 Ribosome small subunit-stimulated GTPase EngC Universal GTPases
fig|6666666.229910.peg.1110 CDS CP007502.1 1080250 1080507 1 + 258 Phosphotransferase system, phosphocarrier protein HPr Fructose utilization
fig|6666666.229910.peg.1111 CDS CP007502.1 1080621 1082348 3 + 1728 Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) Fructose utilization
fig|6666666.229910.peg.1112 CDS CP007502.1 1082409 1082909 3 + 501 PTS system, glucose-specific IIA component - none -
fig|6666666.229910.peg.1113 CDS CP007502.1 1085074 1083035 -1 - 2040 Oligopeptidase A (EC 3.4.24.70) Protein degradation
fig|6666666.229910.peg.1114 CDS CP007502.1 1085216 1085581 2 + 366 FIG039061: hypothetical protein related to heme utilization - none -
fig|6666666.229910.peg.1115 CDS CP007502.1 1085637 1087175 3 + 1539 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229910.peg.1116 CDS CP007502.1 1088037 1087450 -3 - 588 Aminodeoxychorismate lyase (EC 4.1.3.38) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Folate Biosynthesis;
Tryptophan synthesis
fig|6666666.229910.peg.1117 CDS CP007502.1 1089014 1088040 -2 - 975 Para-aminobenzoate synthase, aminase component (EC 2.6.1.85) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Folate Biosynthesis;
Tryptophan synthesis
fig|6666666.229910.peg.1118 CDS CP007502.1 1089116 1089682 2 + 567 Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Folate Biosynthesis;
Tryptophan synthesis
fig|6666666.229910.peg.1119 CDS CP007502.1 1089838 1090782 1 + 945 Hydroxypyruvate reductase (EC 1.1.1.81) Glycerate metabolism;
Glycolate, glyoxylate interconversions
fig|6666666.229910.peg.1120 CDS CP007502.1 1091326 1092510 1 + 1185 Lipoprotein releasing system transmembrane protein LolC Lipopolysaccharide assembly;
Lipoprotein sorting system
fig|6666666.229910.peg.1121 CDS CP007502.1 1092525 1093211 3 + 687 Lipoprotein releasing system ATP-binding protein LolD Lipopolysaccharide assembly;
Lipoprotein sorting system
fig|6666666.229910.peg.1122 CDS CP007502.1 1093211 1094461 2 + 1251 Lipoprotein releasing system transmembrane protein LolE Lipopolysaccharide assembly;
Lipoprotein sorting system
fig|6666666.229910.peg.1123 CDS CP007502.1 1094562 1095641 3 + 1080 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha (EC 2.5.1.54) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229910.peg.1124 CDS CP007502.1 1095772 1095650 -1 - 123 hypothetical protein - none -
fig|6666666.229910.peg.1125 CDS CP007502.1 1095787 1097193 1 + 1407 Replicative DNA helicase (EC 3.6.1.-) - none -
fig|6666666.229910.peg.1126 CDS CP007502.1 1097217 1098299 3 + 1083 Alanine racemase (EC 5.1.1.1) ## biosynthetic Alanine biosynthesis;
Pyruvate Alanine Serine Interconversions
fig|6666666.229910.peg.1127 CDS CP007502.1 1098315 1099964 3 + 1650 Glucose-6-phosphate isomerase (EC 5.3.1.9) Glycolysis and Gluconeogenesis
fig|6666666.229910.peg.1128 CDS CP007502.1 1100104 1100577 1 + 474 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster
fig|6666666.229910.peg.1129 CDS CP007502.1 1100584 1101009 1 + 426 Transcription termination protein NusB Riboflavin synthesis cluster;
Transcription factors bacterial
fig|6666666.229910.peg.1130 CDS CP007502.1 1101028 1102011 1 + 984 Thiamine-monophosphate kinase (EC 2.7.4.16) 5-FCL-like protein;
Riboflavin synthesis cluster;
Thiamin biosynthesis
fig|6666666.229910.peg.1131 CDS CP007502.1 1102021 1102512 1 + 492 Phosphatidylglycerophosphatase A (EC 3.1.3.27) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Riboflavin synthesis cluster
fig|6666666.229910.peg.1132 CDS CP007502.1 1102521 1103144 3 + 624 L-lysine permease - none -
fig|6666666.229910.peg.1133 CDS CP007502.1 1103166 1103978 3 + 813 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229910.peg.1134 CDS CP007502.1 1104393 1104145 -3 - 249 Ferredoxin Soluble cytochromes and functionally related electron carriers
fig|6666666.229910.peg.1135 CDS CP007502.1 1104730 1104461 -1 - 270 hypothetical protein - none -
fig|6666666.229910.peg.1136 CDS CP007502.1 1105882 1104752 -1 - 1131 Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) Ribonucleotide reduction
fig|6666666.229910.peg.1137 CDS CP007502.1 1106740 1106084 -1 - 657 hypothetical protein - none -
fig|6666666.229910.peg.1138 CDS CP007502.1 1109064 1106794 -3 - 2271 Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) Ribonucleotide reduction
fig|6666666.229910.peg.1139 CDS CP007502.1 1110839 1109367 -2 - 1473 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229910.peg.1140 CDS CP007502.1 1110977 1111099 2 + 123 hypothetical protein - none -
fig|6666666.229910.peg.1141 CDS CP007502.1 1111110 1112138 3 + 1029 Ferric iron ABC transporter, iron-binding protein Iron acquisition in Streptococcus
fig|6666666.229910.peg.1142 CDS CP007502.1 1112190 1114223 3 + 2034 Ferric iron ABC transporter, permease protein Iron acquisition in Streptococcus
fig|6666666.229910.peg.1143 CDS CP007502.1 1114207 1115247 1 + 1041 Sulfate and thiosulfate import ATP-binding protein CysA (EC 3.6.3.25) Cysteine Biosynthesis;
Uptake of selenate and selenite
fig|6666666.229910.peg.1144 CDS CP007502.1 1117358 1115307 -2 - 2052 Periplasmic alpha-amylase (EC 3.2.1.1) Maltose and Maltodextrin Utilization
fig|6666666.229910.peg.1145 CDS CP007502.1 1118343 1117453 -3 - 891 Maltose/maltodextrin ABC transporter, permease protein MalG Maltose and Maltodextrin Utilization
fig|6666666.229910.peg.1146 CDS CP007502.1 1119909 1118365 -3 - 1545 Maltose/maltodextrin ABC transporter, permease protein MalF Maltose and Maltodextrin Utilization
fig|6666666.229910.peg.1147 CDS CP007502.1 1120064 1119933 -2 - 132 hypothetical protein - none -
fig|6666666.229910.peg.1148 CDS CP007502.1 1121223 1120033 -3 - 1191 Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein MalE Alpha-Amylase locus in Streptocococcus;
Bacterial Chemotaxis;
Maltose and Maltodextrin Utilization
fig|6666666.229910.peg.1149 CDS CP007502.1 1121680 1122798 1 + 1119 Maltose/maltodextrin transport ATP-binding protein MalK (EC 3.6.3.19) Maltose and Maltodextrin Utilization
fig|6666666.229910.peg.1150 CDS CP007502.1 1122875 1124158 2 + 1284 Maltoporin (maltose/maltodextrin high-affinity receptor, phage lambda receptor protein) Maltose and Maltodextrin Utilization
fig|6666666.229910.peg.1151 CDS CP007502.1 1124244 1125143 3 + 900 Maltose operon periplasmic protein MalM Maltose and Maltodextrin Utilization
fig|6666666.229910.peg.1152 CDS CP007502.1 1125214 1125345 1 + 132 hypothetical protein - none -
fig|6666666.229910.peg.1153 CDS CP007502.1 1126252 1125521 -1 - 732 Molybdopterin biosynthesis protein MoeB Molybdenum cofactor biosynthesis
fig|6666666.229910.peg.1154 CDS CP007502.1 1127482 1126268 -1 - 1215 Molybdopterin biosynthesis protein MoeA Molybdenum cofactor biosynthesis
fig|6666666.229910.peg.1155 CDS CP007502.1 1127611 1128267 1 + 657 GTP cyclohydrolase I (EC 3.5.4.16) type 1 Folate Biosynthesis;
Folate biosynthesis cluster;
Molybdenum cofactor biosynthesis;
Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229910.peg.1156 CDS CP007502.1 1129810 1128368 -1 - 1443 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) Metallocarboxypeptidases (EC 3.4.17.-);
Murein Hydrolases;
Peptidoglycan Biosynthesis
fig|6666666.229910.peg.1157 CDS CP007502.1 1129970 1130446 2 + 477 Transcription elongation factor GreA Transcription factors bacterial
fig|6666666.229910.peg.1158 CDS CP007502.1 1130821 1130519 -1 - 303 FIG004454: RNA binding protein - none -
fig|6666666.229910.peg.1159 CDS CP007502.1 1130989 1131288 1 + 300 Phage-related protein - none -
fig|6666666.229910.peg.1160 CDS CP007502.1 1131285 1131581 3 + 297 FIG045511: hypothetical antitoxin (to FIG022160: hypothetical toxin) - none -
fig|6666666.229910.peg.1161 CDS CP007502.1 1132228 1131614 -1 - 615 Riboflavin synthase eubacterial/eukaryotic (EC 2.5.1.9) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster;
riboflavin to FAD
fig|6666666.229910.peg.1162 CDS CP007502.1 1132255 1133652 1 + 1398 Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps Multidrug Resistance Efflux Pumps;
Riboflavin, FMN and FAD metabolism in plants
fig|6666666.229910.peg.1163 CDS CP007502.1 1134435 1133956 -3 - 480 Cys-tRNA(Pro) deacylase YbaK tRNA aminoacylation, Pro
fig|6666666.229910.peg.1164 CDS CP007502.1 1134496 1135299 1 + 804 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch;
Threonine and Homoserine Biosynthesis
fig|6666666.229910.peg.1165 CDS CP007502.1 1135284 1135733 3 + 450 Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229910.peg.1166 CDS CP007502.1 1135702 1136505 1 + 804 Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229910.peg.1167 CDS CP007502.1 1136508 1137122 3 + 615 ABC transporter ATP-binding protein - none -
fig|6666666.229910.peg.1168 CDS CP007502.1 1137119 1137979 2 + 861 Molybdenum transport system protein ModD Molybdenum cofactor biosynthesis
fig|6666666.229910.peg.1169 CDS CP007502.1 1138276 1139724 1 + 1449 TldD protein, part of TldE/TldD proteolytic complex CBSS-354.1.peg.2917;
Putative TldE-TldD proteolytic complex
fig|6666666.229910.peg.1170 CDS CP007502.1 1139775 1145546 3 + 5772 FIG00904191: hypothetical protein - none -
fig|6666666.229910.peg.1171 CDS CP007502.1 1145679 1146728 3 + 1050 Putative membrane protein YeiH - none -
fig|6666666.229910.peg.1172 CDS CP007502.1 1146848 1149205 2 + 2358 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) DNA uptake cluster;
Peptidoglycan Biosynthesis;
Type IV pilus
fig|6666666.229910.peg.1173 CDS CP007502.1 1149989 1149315 -2 - 675 3-keto-L-gulonate 6-phosphate decarboxylase L-ascorbate utilization (and related gene clusters)
fig|6666666.229910.peg.1174 CDS CP007502.1 1150527 1150066 -3 - 462 Ascorbate-specific PTS system, EIIA component (EC 2.7.1.-) L-ascorbate utilization (and related gene clusters)
fig|6666666.229910.peg.1175 CDS CP007502.1 1152354 1150582 -3 - 1773 Ascorbate-specific PTS system, EIIC component L-ascorbate utilization (and related gene clusters)
fig|6666666.229910.peg.1176 CDS CP007502.1 1152702 1153793 3 + 1092 Probable L-ascorbate-6-phosphate lactonase UlaG (EC 3.1.1.-) (L-ascorbate utilization protein G) L-ascorbate utilization (and related gene clusters)
fig|6666666.229910.peg.1177 CDS CP007502.1 1153885 1154634 1 + 750 Ascorbate utilization transcriptional regulator UlaR, HTH-type L-ascorbate utilization (and related gene clusters)
fig|6666666.229910.peg.1178 CDS CP007502.1 1154675 1155535 2 + 861 L-xylulose 5-phosphate 3-epimerase (EC 5.1.3.-) L-ascorbate utilization (and related gene clusters)
fig|6666666.229910.peg.1179 CDS CP007502.1 1155529 1156224 1 + 696 L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) L-ascorbate utilization (and related gene clusters)
fig|6666666.229910.peg.1180 CDS CP007502.1 1157521 1156307 -1 - 1215 Tyrosine-specific transport protein - none -
fig|6666666.229910.peg.1181 CDS CP007502.1 1158536 1158273 -2 - 264 Glutaredoxin 1 Glutaredoxins;
Glutathione: Redox cycle
fig|6666666.229910.peg.1182 CDS CP007502.1 1158663 1159397 3 + 735 Oxygen-insensitive NADPH nitroreductase (EC 1.-.-.-) - none -
fig|6666666.229910.peg.1183 CDS CP007502.1 1159416 1160321 3 + 906 Ribosomal protein S6 glutaminyl transferase Ribosome biogenesis bacterial
fig|6666666.229910.peg.1184 CDS CP007502.1 1161222 1160617 -3 - 606 FIG026291: Hypothetical periplasmic protein - none -
fig|6666666.229910.peg.1185 CDS CP007502.1 1162720 1161326 -1 - 1395 Fumarate hydratase class II (EC 4.2.1.2) TCA Cycle
fig|6666666.229910.peg.1186 CDS CP007502.1 1162930 1163379 1 + 450 DNA polymerase III chi subunit (EC 2.7.7.7) CBSS-208964.1.peg.3826
fig|6666666.229910.peg.1187 CDS CP007502.1 1163418 1163546 3 + 129 RNA-binding domain protein - none -
fig|6666666.229910.peg.1188 CDS CP007502.1 1163574 1163702 3 + 129 RNA-binding domain protein - none -
fig|6666666.229910.peg.1189 CDS CP007502.1 1164421 1167285 1 + 2865 Valyl-tRNA synthetase (EC 6.1.1.9) CBSS-208964.1.peg.3826;
tRNA aminoacylation, Val
fig|6666666.229910.peg.1190 CDS CP007502.1 1167352 1168245 1 + 894 hypothetical protein - none -
fig|6666666.229910.peg.1191 CDS CP007502.1 1168364 1168242 -2 - 123 HipA protein Persister Cells
fig|6666666.229910.peg.1192 CDS CP007502.1 1168477 1168364 -1 - 114 HipA protein Persister Cells
fig|6666666.229910.peg.1193 CDS CP007502.1 1168812 1168474 -3 - 339 HipA protein Persister Cells
fig|6666666.229910.peg.1194 CDS CP007502.1 1169143 1168862 -1 - 282 HipB protein Persister Cells
fig|6666666.229910.peg.1195 CDS CP007502.1 1170801 1169287 -3 - 1515 Inner membrane component of tripartite multidrug resistance system Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria
fig|6666666.229910.peg.1196 CDS CP007502.1 1171974 1170814 -3 - 1161 Membrane fusion component of tripartite multidrug resistance system Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria
fig|6666666.229910.peg.1197 CDS CP007502.1 1172183 1172665 2 + 483 Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1) Oxidative stress;
Oxidative stress;
Oxidative stress
fig|6666666.229910.peg.1198 CDS CP007502.1 1174763 1172784 -2 - 1980 Exoribonuclease II (EC 3.1.13.1) RNA processing and degradation, bacterial
fig|6666666.229910.peg.1199 CDS CP007502.1 1175624 1174836 -2 - 789 Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9) Fatty Acid Biosynthesis FASII
fig|6666666.229910.peg.1200 CDS CP007502.1 1176572 1175715 -2 - 858 FIG137478: Hypothetical protein YbgI - none -
fig|6666666.229910.peg.1201 CDS CP007502.1 1177369 1176695 -1 - 675 Queuosine Biosynthesis QueE Radical SAM Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229910.peg.1202 CDS CP007502.1 1177755 1177330 -3 - 426 6-carboxytetrahydropterin synthase (EC 4.1.2.50) @ Queuosine biosynthesis QueD, PTPS-I Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229910.peg.1203 CDS CP007502.1 1179453 1177945 -3 - 1509 Lysyl-tRNA synthetase (class II) (EC 6.1.1.6) tRNA aminoacylation, Lys
fig|6666666.229910.peg.1204 CDS CP007502.1 1180412 1179510 -2 - 903 Peptide chain release factor 2; programmed frameshift-containing Programmed frameshift;
Programmed frameshift;
Translation termination factors bacterial
fig|6666666.229910.peg.1205 CDS CP007502.1 1180692 1180531 -3 - 162 hypothetical protein - none -
fig|6666666.229910.peg.1206 CDS CP007502.1 1180776 1181459 3 + 684 Thiol:disulfide interchange protein DsbC Periplasmic disulfide interchange
fig|6666666.229910.peg.1207 CDS CP007502.1 1181472 1183193 3 + 1722 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) DNA Repair Base Excision;
DNA repair, bacterial RecFOR pathway
fig|6666666.229910.peg.1208 CDS CP007502.1 1183226 1183873 2 + 648 Thiol-disulfide isomerase and thioredoxins - none -
fig|6666666.229910.peg.1209 CDS CP007502.1 1183890 1184582 3 + 693 5@1-methylthioadenosine nucleosidase (EC 3.2.2.16) / S-adenosylhomocysteine nucleosidase (EC 3.2.2.9) Adenosyl nucleosidases;
Adenosyl nucleosidases;
Methionine Biosynthesis;
Methionine Degradation;
Polyamine Metabolism
fig|6666666.229910.peg.1210 CDS CP007502.1 1184760 1185455 3 + 696 Additional periplasmic component NikK of nickel ECF transporter Transport of Nickel and Cobalt
fig|6666666.229910.peg.1211 CDS CP007502.1 1185462 1185965 3 + 504 Additional component NikL of nickel ECF transporter Transport of Nickel and Cobalt
fig|6666666.229910.peg.1212 CDS CP007502.1 1185965 1186618 2 + 654 Substrate-specific component NikM of nickel ECF transporter ECF class transporters;
Transport of Nickel and Cobalt
fig|6666666.229910.peg.1213 CDS CP007502.1 1186615 1187280 1 + 666 Transmembrane component NikQ of energizing module of nickel ECF transporter ECF class transporters;
Transport of Nickel and Cobalt
fig|6666666.229910.peg.1214 CDS CP007502.1 1187277 1187900 3 + 624 ATPase component NikO of energizing module of nickel ECF transporter ECF class transporters;
Transport of Nickel and Cobalt
fig|6666666.229910.peg.1215 CDS CP007502.1 1187979 1188788 3 + 810 [NiFe] hydrogenase nickel incorporation-associated protein HypB G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229910.peg.1216 CDS CP007502.1 1188815 1189927 2 + 1113 [NiFe] hydrogenase metallocenter assembly protein HypD G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229910.peg.1217 CDS CP007502.1 1189927 1190478 1 + 552 [NiFe] hydrogenase metallocenter assembly protein HypE G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229910.peg.1218 CDS CP007502.1 1192061 1192699 2 + 639 transposase - none -
fig|6666666.229910.peg.1219 CDS CP007502.1 1193385 1193248 -3 - 138 hypothetical protein - none -
fig|6666666.229910.peg.1220 CDS CP007502.1 1195002 1194187 -3 - 816 Shikimate 5-dehydrogenase I gamma (EC 1.1.1.25) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229910.peg.1221 CDS CP007502.1 1196036 1195152 -2 - 885 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) 5-FCL-like protein;
Methionine Biosynthesis;
One-carbon metabolism by tetrahydropterines;
Serine-glyoxylate cycle
fig|6666666.229910.peg.1222 CDS CP007502.1 1197278 1196211 -2 - 1068 FIG000906: Predicted Permease CBSS-208964.1.peg.3826
fig|6666666.229910.peg.1223 CDS CP007502.1 1198401 1197283 -3 - 1119 FIG000988: Predicted permease CBSS-208964.1.peg.3826
fig|6666666.229910.peg.1224 CDS CP007502.1 1198538 1200028 2 + 1491 Cytosol aminopeptidase PepA (EC 3.4.11.1) Aminopeptidases (EC 3.4.11.-);
CBSS-208964.1.peg.3826;
Dehydrogenase complexes
fig|6666666.229910.peg.1225 CDS CP007502.1 1201234 1200173 -1 - 1062 Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229910.peg.1226 CDS CP007502.1 1201949 1201221 -2 - 729 Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229910.peg.1227 CDS CP007502.1 1202792 1202028 -2 - 765 Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229910.peg.1228 CDS CP007502.1 1203019 1203798 1 + 780 DNA-binding domain of ModE / Molybdate-binding domain of ModE Molybdenum cofactor biosynthesis;
Molybdenum cofactor biosynthesis
fig|6666666.229910.peg.1229 CDS CP007502.1 1204019 1205362 2 + 1344 Arsenic efflux pump protein Arsenic resistance
fig|6666666.229910.peg.1230 CDS CP007502.1 1206025 1205429 -1 - 597 Nucleotidase YfbR, HD superfamily Housecleaning nucleoside triphosphate pyrophosphatases
fig|6666666.229910.peg.1231 CDS CP007502.1 1207062 1206034 -3 - 1029 Outer membrane stress sensor protease DegS Periplasmic Stress Response;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229910.peg.1232 CDS CP007502.1 1208195 1207071 -2 - 1125 Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster;
Riboflavin synthesis cluster
fig|6666666.229910.peg.1233 CDS CP007502.1 1208647 1208195 -1 - 453 Ribonucleotide reductase transcriptional regulator NrdR Ribonucleotide reduction
fig|6666666.229910.peg.1234 CDS CP007502.1 1209825 1208764 -3 - 1062 LSU rRNA 2@1-O-methyl-C2498 methyltransferase RlmM RNA methylation
fig|6666666.229910.peg.1235 CDS CP007502.1 1210750 1209845 -1 - 906 Glycine cleavage system transcriptional activator GcvA LysR-family proteins in Escherichia coli;
Orphan regulatory proteins
fig|6666666.229910.peg.1236 CDS CP007502.1 1211212 1212231 1 + 1020 Branched-chain amino acid aminotransferase (EC 2.6.1.42) Alanine biosynthesis;
Pyruvate Alanine Serine Interconversions
fig|6666666.229910.peg.1237 CDS CP007502.1 1212599 1213339 2 + 741 FIG00698611: hypothetical protein - none -
fig|6666666.229910.peg.1238 CDS CP007502.1 1214430 1213495 -3 - 936 Malate dehydrogenase (EC 1.1.1.37) Serine-glyoxylate cycle;
TCA Cycle
fig|6666666.229910.peg.1239 CDS CP007502.1 1214686 1215153 1 + 468 Arginine pathway regulatory protein ArgR, repressor of arg regulon Arginine Deiminase Pathway;
Arginine and Ornithine Degradation
fig|6666666.229910.peg.1240 CDS CP007502.1 1215177 1216064 3 + 888 Cell division inhibitor CBSS-83333.1.peg.946;
Persister Cells
fig|6666666.229910.peg.1241 CDS CP007502.1 1216255 1216836 1 + 582 Electron transport complex protein RnfA Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229910.peg.1242 CDS CP007502.1 1216836 1217426 3 + 591 Electron transport complex protein RnfB Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229910.peg.1243 CDS CP007502.1 1217427 1219379 3 + 1953 Electron transport complex protein RnfC Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229910.peg.1244 CDS CP007502.1 1219390 1220469 1 + 1080 Electron transport complex protein RnfD Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229910.peg.1245 CDS CP007502.1 1220476 1221096 1 + 621 Electron transport complex protein RnfG Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229910.peg.1246 CDS CP007502.1 1221089 1221874 2 + 786 Electron transport complex protein RnfE Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229910.peg.1247 CDS CP007502.1 1222021 1222656 1 + 636 Endonuclease III (EC 4.2.99.18) DNA Repair Base Excision
fig|6666666.229910.peg.1248 CDS CP007502.1 1222681 1224048 1 + 1368 sodium-dependent transporter - none -
fig|6666666.229910.peg.1249 CDS CP007502.1 1225228 1224443 -1 - 786 Zinc ABC transporter, inner membrane permease protein ZnuB - none -
fig|6666666.229910.peg.1250 CDS CP007502.1 1226013 1225240 -3 - 774 Zinc ABC transporter, ATP-binding protein ZnuC - none -
fig|6666666.229910.peg.1251 CDS CP007502.1 1226202 1227734 3 + 1533 Cell wall endopeptidase, family M23/M37 Glutaredoxins
fig|6666666.229910.peg.1252 CDS CP007502.1 1228600 1227842 -1 - 759 Iron(III) dicitrate transport ATP-binding protein FecE (TC 3.A.1.14.1) - none -
fig|6666666.229910.peg.1253 CDS CP007502.1 1229535 1228612 -3 - 924 Ferric vibriobactin, enterobactin transport system, permease protein VctG (TC 3.A.1.14.6) - none -
fig|6666666.229910.peg.1254 CDS CP007502.1 1230508 1229543 -1 - 966 Ferric anguibactin transport system permease protein fatD - none -
fig|6666666.229910.peg.1255 CDS CP007502.1 1231467 1230568 -3 - 900 Iron compound ABC uptake transporter substrate-binding protein PiuA - none -
fig|6666666.229910.peg.1256 CDS CP007502.1 1231722 1231540 -3 - 183 hypothetical protein - none -
fig|6666666.229910.peg.1257 CDS CP007502.1 1231699 1233672 1 + 1974 2@1,3@1-cyclic-nucleotide 2@1-phosphodiesterase (EC 3.1.4.16) Purine conversions;
pyrimidine conversions
fig|6666666.229910.peg.1258 CDS CP007502.1 1234663 1233746 -1 - 918 formate dehydrogenase formation protein FdhE Formate hydrogenase
fig|6666666.229910.peg.1259 CDS CP007502.1 1235036 1235452 2 + 417 Protein ygiW precursor - none -
fig|6666666.229910.peg.1260 CDS CP007502.1 1235590 1236459 1 + 870 Two-component system response regulator QseB Orphan regulatory proteins
fig|6666666.229910.peg.1261 CDS CP007502.1 1236668 1237006 2 + 339 hypothetical protein - none -
fig|6666666.229910.peg.1262 CDS CP007502.1 1237010 1237354 2 + 345 phage-related putative DNA-binding protein - none -
fig|6666666.229910.peg.1263 CDS CP007502.1 1237810 1237926 1 + 117 FIG00697497: hypothetical protein - none -
fig|6666666.229910.peg.1264 CDS CP007502.1 1238411 1238530 2 + 120 Two-component system response regulator QseB Orphan regulatory proteins
fig|6666666.229910.peg.1265 CDS CP007502.1 1238517 1239893 3 + 1377 Sensory histidine kinase QseC Orphan regulatory proteins
fig|6666666.229910.peg.1266 CDS CP007502.1 1241747 1239978 -2 - 1770 Gamma-glutamyltranspeptidase (EC 2.3.2.2) Glutathione: Biosynthesis and gamma-glutamyl cycle
fig|6666666.229910.peg.1267 CDS CP007502.1 1242225 1241980 -3 - 246 FIG00696862: hypothetical protein - none -
fig|6666666.229910.peg.1268 CDS CP007502.1 1243752 1242415 -3 - 1338 Argininosuccinate synthase (EC 6.3.4.5) - none -
fig|6666666.229910.peg.1269 CDS CP007502.1 1244674 1243847 -1 - 828 Nucleoside-diphosphate-sugar epimerases - none -
fig|6666666.229910.peg.1270 CDS CP007502.1 1245031 1246614 1 + 1584 Peptide chain release factor 3 Translation termination factors bacterial
fig|6666666.229910.peg.1271 CDS CP007502.1 1246802 1247152 2 + 351 YPPCP.09C homologue - none -
fig|6666666.229910.peg.1272 CDS CP007502.1 1247149 1247448 1 + 300 Putative transcriptional regulator - none -
fig|6666666.229910.peg.1273 CDS CP007502.1 1250417 1247484 -2 - 2934 Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42) Ammonia assimilation;
CBSS-316057.3.peg.3521
fig|6666666.229910.peg.1274 CDS CP007502.1 1250839 1251600 1 + 762 CRISPR-associated protein Cas3@1@1 CRISPRs
fig|6666666.229910.peg.1275 CDS CP007502.1 1251946 1252170 1 + 225 Phosphomethylpyrimidine kinase (EC 2.7.4.7) 5-FCL-like protein;
Thiamin biosynthesis
fig|6666666.229910.peg.1276 CDS CP007502.1 1252368 1253372 3 + 1005 Thiamin ABC transporter, substrate-binding component Thiamin biosynthesis
fig|6666666.229910.peg.1277 CDS CP007502.1 1253381 1255009 2 + 1629 Thiamin ABC transporter, transmembrane component Thiamin biosynthesis
fig|6666666.229910.peg.1278 CDS CP007502.1 1254993 1255640 3 + 648 Thiamin ABC transporter, ATPase component / Thiamine transport ATP-binding protein thiQ Thiamin biosynthesis
fig|6666666.229910.peg.1279 CDS CP007502.1 1255685 1256689 2 + 1005 Biotin synthase (EC 2.8.1.6) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229910.peg.1280 CDS CP007502.1 1258169 1256787 -2 - 1383 Outer membrane stress sensor protease DegQ, serine protease Periplasmic Stress Response;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229910.peg.1281 CDS CP007502.1 1258232 1258402 2 + 171 hypothetical protein - none -
fig|6666666.229910.peg.1282 CDS CP007502.1 1258770 1258360 -3 - 411 probable membrane protein YPO3565 - none -
fig|6666666.229910.peg.1283 CDS CP007502.1 1260704 1258941 -2 - 1764 FIG00696060: hypothetical protein - none -
fig|6666666.229910.peg.1284 CDS CP007502.1 1262000 1260795 -2 - 1206 Mannose-6-phosphate isomerase (EC 5.3.1.8) Mannose Metabolism
fig|6666666.229910.peg.1285 CDS CP007502.1 1262176 1262514 1 + 339 FIG00904093: hypothetical protein - none -
fig|6666666.229910.peg.1286 CDS CP007502.1 1262703 1263569 3 + 867 PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69) Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism;
Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229910.peg.1287 CDS CP007502.1 1263538 1264194 1 + 657 PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69) Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism;
Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229910.peg.1288 CDS CP007502.1 1264950 1264252 -3 - 699 FIG005121: SAM-dependent methyltransferase (EC 2.1.1.-) CBSS-228410.1.peg.134;
CBSS-342610.3.peg.1536;
Glutathione: Non-redox reactions
fig|6666666.229910.peg.1289 CDS CP007502.1 1264971 1265672 3 + 702 Hydroxyacylglutathione hydrolase (EC 3.1.2.6) CBSS-228410.1.peg.134;
CBSS-342610.3.peg.1536;
Glutathione: Non-redox reactions;
Methylglyoxal Metabolism
fig|6666666.229910.peg.1290 CDS CP007502.1 1265857 1267161 1 + 1305 Glutamyl-tRNA reductase (EC 1.2.1.70) A Gammaproteobacteria Cluster Relating to Translation;
Heme and Siroheme Biosynthesis
fig|6666666.229910.peg.1291 CDS CP007502.1 1267223 1268446 2 + 1224 N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family Chitin and N-acetylglucosamine utilization
fig|6666666.229910.peg.1292 CDS CP007502.1 1269825 1269181 -3 - 645 Adenylate kinase (EC 2.7.4.3) Purine conversions
fig|6666666.229910.peg.1293 CDS CP007502.1 1271247 1269958 -3 - 1290 AmpG permease Recycling of Peptidoglycan Amino Acids
fig|6666666.229910.peg.1294 CDS CP007502.1 1271595 1271254 -3 - 342 [NiFe] hydrogenase nickel incorporation protein HybF NiFe hydrogenase maturation
fig|6666666.229910.peg.1295 CDS CP007502.1 1272617 1271601 -2 - 1017 UDP-glucose 4-epimerase (EC 5.1.3.2) Lactose and Galactose Uptake and Utilization;
Rhamnose containing glycans
fig|6666666.229910.peg.1296 CDS CP007502.1 1272811 1273197 1 + 387 Integral membrane protein - none -
fig|6666666.229910.peg.1297 CDS CP007502.1 1273322 1274653 2 + 1332 Guanine-hypoxanthine permease Purine Utilization
fig|6666666.229910.peg.1298 CDS CP007502.1 1276027 1274681 -1 - 1347 tRNA(Ile)-lysidine synthetase (EC 6.3.4.19) Cell division-ribosomal stress proteins cluster;
Folate biosynthesis cluster;
tRNA modification Bacteria;
tRNA processing;
tRNAmodification position 34
fig|6666666.229910.peg.1299 CDS CP007502.1 1276916 1276059 -2 - 858 Pyridoxal kinase (EC 2.7.1.35) Pyridoxin (Vitamin B6) Biosynthesis
fig|6666666.229910.peg.1300 CDS CP007502.1 1277932 1276979 -1 - 954 Acetyl-coenzyme A carboxyl transferase alpha chain (EC 6.4.1.2) Fatty Acid Biosynthesis FASII
fig|6666666.229910.peg.1301 CDS CP007502.1 1279714 1280664 1 + 951 hypothetical protein - none -
fig|6666666.229910.peg.1302 CDS CP007502.1 1281344 1281165 -2 - 180 hypothetical protein - none -
fig|6666666.229910.peg.1303 CDS CP007502.1 1281445 1281582 1 + 138 hypothetical protein - none -
fig|6666666.229910.peg.1304 CDS CP007502.1 1282373 1282645 2 + 273 putative antirepressor protein Ant - none -
fig|6666666.229910.peg.1305 CDS CP007502.1 1282733 1282933 2 + 201 Phage protein - none -
fig|6666666.229910.peg.1306 CDS CP007502.1 1283676 1283134 -3 - 543 Phage Rha protein - none -
fig|6666666.229910.peg.1307 CDS CP007502.1 1284275 1284120 -2 - 156 hypothetical protein - none -
fig|6666666.229910.peg.1308 CDS CP007502.1 1284588 1285112 3 + 525 Phage protein - none -
fig|6666666.229910.peg.1309 CDS CP007502.1 1286351 1285443 -2 - 909 hypothetical protein - none -
fig|6666666.229910.peg.1310 CDS CP007502.1 1287107 1286442 -2 - 666 putative prophage repressor CI - none -
fig|6666666.229910.peg.1311 CDS CP007502.1 1288052 1288165 2 + 114 hypothetical protein - none -
fig|6666666.229910.peg.1312 CDS CP007502.1 1288299 1288171 -3 - 129 hypothetical protein - none -
fig|6666666.229910.peg.1313 CDS CP007502.1 1290231 1288672 -3 - 1560 GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2) Purine conversions
fig|6666666.229910.peg.1314 CDS CP007502.1 1290529 1290263 -1 - 267 YafQ toxin protein Toxin-antitoxin replicon stabilization systems
fig|6666666.229910.peg.1315 CDS CP007502.1 1290813 1290541 -3 - 273 DNA-damage-inducible protein J DNA repair, bacterial;
Toxin-antitoxin replicon stabilization systems
fig|6666666.229910.peg.1316 CDS CP007502.1 1291038 1290853 -3 - 186 hypothetical protein - none -
fig|6666666.229910.peg.1317 CDS CP007502.1 1292420 1291068 -2 - 1353 C4-dicarboxylate transporter DcuC (TC 2.A.61.1.1) Citrate Metabolism, Transport, and Regulation
fig|6666666.229910.peg.1318 CDS CP007502.1 1292859 1293314 3 + 456 FIG000325: clustered with transcription termination protein NusA NusA-TFII Cluster;
Transcription factors bacterial
fig|6666666.229910.peg.1319 CDS CP007502.1 1293338 1294834 2 + 1497 Transcription termination protein NusA NusA-TFII Cluster;
Transcription factors bacterial
fig|6666666.229910.peg.1320 CDS CP007502.1 1294850 1297342 2 + 2493 Translation initiation factor 2 CBSS-138119.3.peg.2719;
NusA-TFII Cluster;
Translation initiation factors bacterial;
Universal GTPases
fig|6666666.229910.peg.1321 CDS CP007502.1 1297627 1299999 1 + 2373 Type III restriction-modification system methylation subunit (EC 2.1.1.72) Restriction-Modification System
fig|6666666.229910.peg.1322 CDS CP007502.1 1300101 1301063 3 + 963 FIG00698532: hypothetical protein - none -
fig|6666666.229910.peg.1323 CDS CP007502.1 1301068 1302054 1 + 987 FIG00698532: hypothetical protein - none -
fig|6666666.229910.peg.1324 CDS CP007502.1 1302051 1304750 3 + 2700 helicase domain protein - none -
fig|6666666.229910.peg.1325 CDS CP007502.1 1304852 1305238 2 + 387 Ribosome-binding factor A CBSS-138119.3.peg.2719;
NusA-TFII Cluster;
Translation initiation factors bacterial
fig|6666666.229910.peg.1326 CDS CP007502.1 1305238 1306155 1 + 918 tRNA pseudouridine synthase B (EC 4.2.1.70) CBSS-138119.3.peg.2719;
RNA pseudouridine syntheses;
Riboflavin, FMN and FAD metabolism in plants;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229910.peg.1327 CDS CP007502.1 1306343 1306197 -2 - 147 hypothetical protein - none -
fig|6666666.229910.peg.1328 CDS CP007502.1 1307053 1306442 -1 - 612 hypothetical protein - none -
fig|6666666.229910.peg.1329 CDS CP007502.1 1308367 1307180 -1 - 1188 Tyrosyl-tRNA synthetase (EC 6.1.1.1) tRNA aminoacylation, Tyr
fig|6666666.229910.peg.1330 CDS CP007502.1 1309340 1308615 -2 - 726 Sugar/maltose fermentation stimulation protein homolog Fermentations: Mixed acid
fig|6666666.229910.peg.1331 CDS CP007502.1 1309633 1311168 1 + 1536 NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2) Phosphate metabolism
fig|6666666.229910.peg.1332 CDS CP007502.1 1311179 1312603 2 + 1425 NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) Phosphate metabolism
fig|6666666.229910.peg.1333 CDS CP007502.1 1312620 1312772 3 + 153 hypothetical protein - none -
fig|6666666.229910.peg.1334 CDS CP007502.1 1313148 1312987 -3 - 162 hypothetical protein - none -
fig|6666666.229910.peg.1335 CDS CP007502.1 1313616 1314464 3 + 849 filamentation induced by cAMP protein Fic-like protein - none -
fig|6666666.229910.peg.1336 CDS CP007502.1 1314976 1316085 1 + 1110 Selenide,water dikinase (EC 2.7.9.3) Selenocysteine metabolism;
tRNA modification Bacteria
fig|6666666.229910.peg.1337 CDS CP007502.1 1316440 1317393 1 + 954 Putative ABC transporter of substrate X, ATP-binding subunit ABC transporter of unknown substrate X
fig|6666666.229910.peg.1338 CDS CP007502.1 1317390 1318259 3 + 870 Putative ABC transporter of substrate X, permease subunit I ABC transporter of unknown substrate X
fig|6666666.229910.peg.1339 CDS CP007502.1 1318256 1319107 2 + 852 Putative ABC transporter of substrate X, permease subunit II ABC transporter of unknown substrate X
fig|6666666.229910.peg.1340 CDS CP007502.1 1319127 1320218 3 + 1092 Possible ABC transporter, periplasmic substrate X binding protein precursor ABC transporter of unknown substrate X
fig|6666666.229910.peg.1341 CDS CP007502.1 1320409 1320269 -1 - 141 Autoinducer 2 (AI-2) ABC transport system, periplasmic AI-2 binding protein LsrB Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229910.peg.1342 CDS CP007502.1 1322434 1320605 -1 - 1830 Excinuclease ABC subunit C DNA repair, UvrABC system
fig|6666666.229910.peg.1343 CDS CP007502.1 1323346 1322573 -1 - 774 3-deoxy-manno-octulosonate cytidylyltransferase (EC 2.7.7.38) KDO2-Lipid A biosynthesis;
KDO2-Lipid A biosynthesis cluster 2
fig|6666666.229910.peg.1344 CDS CP007502.1 1323527 1323348 -2 - 180 FIG002473: Protein YcaR in KDO2-Lipid A biosynthesis cluster Broadly distributed proteins not in subsystems;
KDO2-Lipid A biosynthesis cluster 2
fig|6666666.229910.peg.1345 CDS CP007502.1 1324523 1323549 -2 - 975 Tetraacyldisaccharide 4@1-kinase (EC 2.7.1.130) KDO2-Lipid A biosynthesis;
KDO2-Lipid A biosynthesis cluster 2
fig|6666666.229910.peg.1346 CDS CP007502.1 1326290 1324542 -2 - 1749 Lipid A export ATP-binding/permease protein MsbA (EC 3.6.3.25) KDO2-Lipid A biosynthesis;
KDO2-Lipid A biosynthesis cluster 2
fig|6666666.229910.peg.1347 CDS CP007502.1 1328571 1326337 -3 - 2235 DNA internalization-related competence protein ComEC/Rec2 KDO2-Lipid A biosynthesis;
KDO2-Lipid A biosynthesis cluster 2
fig|6666666.229910.peg.1348 CDS CP007502.1 1329064 1329501 1 + 438 C4-type zinc finger protein, DksA/TraR family - none -
fig|6666666.229910.peg.1349 CDS CP007502.1 1329618 1331084 3 + 1467 Poly(A) polymerase (EC 2.7.7.19) Polyadenylation bacterial
fig|6666666.229910.peg.1350 CDS CP007502.1 1331077 1331577 1 + 501 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) Folate Biosynthesis;
Folate biosynthesis cluster
fig|6666666.229910.peg.1351 CDS CP007502.1 1331794 1331648 -1 - 147 hypothetical protein - none -
fig|6666666.229910.peg.1352 CDS CP007502.1 1332009 1331875 -3 - 135 hypothetical protein - none -
fig|6666666.229910.peg.1353 CDS CP007502.1 1334491 1332356 -1 - 2136 Phosphate acetyltransferase (EC 2.3.1.8) Fermentations: Lactate;
Fermentations: Mixed acid;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229910.peg.1354 CDS CP007502.1 1335763 1334561 -1 - 1203 Acetate kinase (EC 2.7.2.1) Fermentations: Lactate;
Fermentations: Mixed acid;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229910.peg.1355 CDS CP007502.1 1336031 1336474 2 + 444 FIG00638298: membrane protein YfbV - none -
fig|6666666.229910.peg.1356 CDS CP007502.1 1336653 1337195 3 + 543 Colicin V production protein - none -
fig|6666666.229910.peg.1357 CDS CP007502.1 1337317 1337192 -1 - 126 hypothetical protein - none -
fig|6666666.229910.peg.1358 CDS CP007502.1 1339414 1337339 -1 - 2076 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) Glycogen metabolism;
Glycogen metabolism cluster;
Maltose and Maltodextrin Utilization;
Maltose utilization cluster
fig|6666666.229910.peg.1359 CDS CP007502.1 1341914 1339524 -2 - 2391 Maltodextrin phosphorylase (EC 2.4.1.1) Glycogen metabolism;
Maltose and Maltodextrin Utilization;
Maltose utilization cluster
fig|6666666.229910.peg.1360 CDS CP007502.1 1342087 1344801 1 + 2715 Transcriptional activator of maltose regulon, MalT Maltose and Maltodextrin Utilization;
Maltose utilization cluster
fig|6666666.229910.peg.1361 CDS CP007502.1 1345829 1344954 -2 - 876 Tellurite resistance protein TehB Tellurite resistance: Chromosomal determinants
fig|6666666.229910.peg.1362 CDS CP007502.1 1346207 1348864 2 + 2658 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) 5-FCL-like protein;
Dehydrogenase complexes;
Methionine Degradation;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229910.peg.1363 CDS CP007502.1 1348893 1350563 3 + 1671 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) 5-FCL-like protein;
Dehydrogenase complexes;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229910.peg.1364 CDS CP007502.1 1350600 1352081 3 + 1482 Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4) 5-FCL-like protein;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate;
TCA Cycle;
TCA Cycle
fig|6666666.229910.peg.1365 CDS CP007502.1 1353063 1352509 -3 - 555 FIG002003: Protein YdjA - none -
fig|6666666.229910.peg.1366 CDS CP007502.1 1353187 1355067 1 + 1881 Signal peptide peptidase SppA (EC 3.4.21.-) - none -
fig|6666666.229910.peg.1367 CDS CP007502.1 1355108 1355314 2 + 207 Chorismate mutase I (EC 5.4.99.5) / Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) Chorismate Synthesis;
Chorismate Synthesis;
Phenylalanine and Tyrosine Branches from Chorismate;
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229910.peg.1368 CDS CP007502.1 1355293 1355457 1 + 165 Chorismate mutase I (EC 5.4.99.5) / Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) Chorismate Synthesis;
Chorismate Synthesis;
Phenylalanine and Tyrosine Branches from Chorismate;
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229910.peg.1369 CDS CP007502.1 1355412 1356230 3 + 819 Chorismate mutase I (EC 5.4.99.5) / Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) Chorismate Synthesis;
Chorismate Synthesis;
Phenylalanine and Tyrosine Branches from Chorismate;
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229910.peg.1370 CDS CP007502.1 1356304 1356927 1 + 624 Hypothetical YciO protein, TsaC/YrdC paralog YrdC-YciO-Sua5 protein family
fig|6666666.229910.peg.1371 CDS CP007502.1 1356982 1357950 1 + 969 Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70) RNA pseudouridine syntheses
fig|6666666.229910.peg.1372 CDS CP007502.1 1357981 1358952 1 + 972 Cys regulon transcriptional activator CysB Cysteine Biosynthesis;
LysR-family proteins in Escherichia coli
fig|6666666.229910.peg.1373 CDS CP007502.1 1359037 1359864 1 + 828 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229910.peg.1374 CDS CP007502.1 1360299 1359979 -3 - 321 putative cytoplasmic protein - none -
fig|6666666.229910.peg.1375 CDS CP007502.1 1360467 1360333 -3 - 135 hypothetical protein - none -
fig|6666666.229910.peg.1376 CDS CP007502.1 1361768 1360770 -2 - 999 Purine nucleotide synthesis repressor Purine nucleotide synthesis regulator
fig|6666666.229910.peg.1377 CDS CP007502.1 1363177 1362074 -1 - 1104 Homoserine O-acetyltransferase (EC 2.3.1.31) Methionine Biosynthesis
fig|6666666.229910.peg.1378 CDS CP007502.1 1363370 1364083 2 + 714 SanA protein - none -
fig|6666666.229910.peg.1379 CDS CP007502.1 1365053 1364067 -2 - 987 Fructose repressor FruR, LacI family Fructose utilization
fig|6666666.229910.peg.1380 CDS CP007502.1 1365888 1366145 3 + 258 FIG00699498: hypothetical protein - none -
fig|6666666.229910.peg.1381 CDS CP007502.1 1366300 1366181 -1 - 120 FIG00697497: hypothetical protein - none -
fig|6666666.229910.peg.1382 CDS CP007502.1 1367799 1367317 -3 - 483 Thiol:disulfide oxidoreductase associated with MetSO reductase Peptide methionine sulfoxide reductase
fig|6666666.229910.peg.1383 CDS CP007502.1 1368455 1367814 -2 - 642 Cytochrome c-type biogenesis protein CcdA homolog, associated with MetSO reductase Peptide methionine sulfoxide reductase
fig|6666666.229910.peg.1384 CDS CP007502.1 1369529 1368459 -2 - 1071 Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11) / Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) Cluster Ytf and putative sugar transporter;
Peptide methionine sulfoxide reductase;
Peptide methionine sulfoxide reductase;
Putative sugar ABC transporter (ytf cluster)
fig|6666666.229910.peg.1385 CDS CP007502.1 1369745 1370437 2 + 693 Carbonic anhydrase (EC 4.2.1.1) - none -
fig|6666666.229910.peg.1386 CDS CP007502.1 1371064 1370543 -1 - 522 21 kDa hemolysin precursor CBSS-160492.1.peg.550
fig|6666666.229910.peg.1387 CDS CP007502.1 1371780 1371196 -3 - 585 Phosphoheptose isomerase (EC 5.3.1.-) CBSS-160492.1.peg.550;
Capsular heptose biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.229910.peg.1388 CDS CP007502.1 1372161 1371793 -3 - 369 Predicted endonuclease distantly related to archaeal Holliday junction resolvase CBSS-160492.1.peg.550
fig|6666666.229910.peg.1389 CDS CP007502.1 1373880 1372162 -3 - 1719 LppC putative lipoprotein CBSS-160492.1.peg.550
fig|6666666.229910.peg.1390 CDS CP007502.1 1373957 1374805 2 + 849 rRNA small subunit methyltransferase I 16S rRNA modification within P site of ribosome;
CBSS-160492.1.peg.550;
Heat shock dnaK gene cluster extended
fig|6666666.229910.peg.1391 CDS CP007502.1 1375075 1376664 1 + 1590 Glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Respiratory dehydrogenases 1
fig|6666666.229910.peg.1392 CDS CP007502.1 1376841 1378178 3 + 1338 NADH dehydrogenase (EC 1.6.99.3) Respiratory dehydrogenases 1;
Riboflavin synthesis cluster
fig|6666666.229910.peg.1393 CDS CP007502.1 1378871 1378281 -2 - 591 FMN-dependent NADH-azoreductase - none -
fig|6666666.229910.peg.1394 CDS CP007502.1 1379064 1380122 3 + 1059 Possible protease sohB (EC 3.4.21.-) - none -
fig|6666666.229910.peg.1395 CDS CP007502.1 1380312 1381136 3 + 825 Outer membrane protein A precursor Osmoregulation
fig|6666666.229910.peg.1396 CDS CP007502.1 1382070 1381195 -3 - 876 Ribulosamine/erythrulosamine 3-kinase potentially involved in protein deglycation Protein deglycation
fig|6666666.229910.peg.1397 CDS CP007502.1 1382311 1384242 1 + 1932 Threonyl-tRNA synthetase (EC 6.1.1.3) tRNA aminoacylation, Thr
fig|6666666.229910.peg.1398 CDS CP007502.1 1384478 1385218 2 + 741 Type III restriction-modification system methylation subunit (EC 2.1.1.72) Restriction-Modification System
fig|6666666.229910.peg.1399 CDS CP007502.1 1385220 1385357 3 + 138 hypothetical protein - none -
fig|6666666.229910.peg.1400 CDS CP007502.1 1386114 1385335 -3 - 780 Ferredoxin--NADP(+) reductase (EC 1.18.1.2) Biogenesis of cytochrome c oxidases
fig|6666666.229910.peg.1401 CDS CP007502.1 1386489 1386968 3 + 480 Translation initiation factor 3 Translation initiation factors bacterial
fig|6666666.229910.peg.1402 CDS CP007502.1 1387112 1386969 -2 - 144 hypothetical protein - none -
fig|6666666.229910.peg.1403 CDS CP007502.1 1387443 1387796 3 + 354 LSU ribosomal protein L20p - none -
fig|6666666.229910.peg.1404 CDS CP007502.1 1389299 1389180 -2 - 120 hypothetical protein - none -
fig|6666666.229910.peg.1405 CDS CP007502.1 1389390 1390340 3 + 951 Tagatose 1,6-bisphosphate aldolase (EC 4.1.2.40) - none -
fig|6666666.229910.peg.1406 CDS CP007502.1 1390358 1391650 2 + 1293 Tagatose-6-phosphate kinase GatZ (EC 2.7.1.144) D-Tagatose and Galactitol Utilization
fig|6666666.229910.peg.1407 CDS CP007502.1 1391628 1392077 3 + 450 PTS system, galactitol-specific IIA component (EC 2.7.1.69) D-Tagatose and Galactitol Utilization
fig|6666666.229910.peg.1408 CDS CP007502.1 1392096 1392380 3 + 285 PTS system, galactitol-specific IIB component (EC 2.7.1.69) D-Tagatose and Galactitol Utilization
fig|6666666.229910.peg.1409 CDS CP007502.1 1392386 1393750 2 + 1365 PTS system, galactitol-specific IIC component (EC 2.7.1.69) D-Tagatose and Galactitol Utilization
fig|6666666.229910.peg.1410 CDS CP007502.1 1393773 1394816 3 + 1044 Galactitol-1-phosphate 5-dehydrogenase (EC 1.1.1.251) D-Tagatose and Galactitol Utilization
fig|6666666.229910.peg.1411 CDS CP007502.1 1394884 1395642 1 + 759 Galactitol utilization operon repressor D-Tagatose and Galactitol Utilization
fig|6666666.229910.peg.1412 CDS CP007502.1 1397612 1395762 -2 - 1851 1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis;
Pyridoxin (Vitamin B6) Biosynthesis;
Thiamin biosynthesis
fig|6666666.229910.peg.1413 CDS CP007502.1 1398587 1397697 -2 - 891 Octaprenyl diphosphate synthase (EC 2.5.1.90) / Dimethylallyltransferase (EC 2.5.1.1) / (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10) / Geranylgeranyl diphosphate synthase (EC 2.5.1.29) Isoprenoid Biosynthesis;
Isoprenoid Biosynthesis;
Isoprenoid Biosynthesis: Interconversions;
Isoprenoinds for Quinones;
Isoprenoinds for Quinones;
Isoprenoinds for Quinones;
Isoprenoinds for Quinones;
Polyprenyl Diphosphate Biosynthesis;
Polyprenyl Diphosphate Biosynthesis;
Polyprenyl Diphosphate Biosynthesis
fig|6666666.229910.peg.1414 CDS CP007502.1 1398843 1398598 -3 - 246 Exodeoxyribonuclease VII small subunit (EC 3.1.11.6) DNA repair, bacterial;
Purine salvage cluster
fig|6666666.229910.peg.1415 CDS CP007502.1 1399068 1399964 3 + 897 Acetyl-coenzyme A carboxyl transferase beta chain (EC 6.4.1.2) Fatty Acid Biosynthesis FASII
fig|6666666.229910.peg.1416 CDS CP007502.1 1399987 1401333 1 + 1347 Dihydrofolate synthase (EC 6.3.2.12) @ Folylpolyglutamate synthase (EC 6.3.2.17) Folate Biosynthesis;
Folate Biosynthesis
fig|6666666.229910.peg.1417 CDS CP007502.1 1402031 1401390 -2 - 642 Hypothetical, related to broad specificity phosphatases COG0406 CBSS-196164.1.peg.461
fig|6666666.229910.peg.1418 CDS CP007502.1 1403550 1402093 -3 - 1458 Cardiolipin synthetase (EC 2.7.8.-) Cardiolipin synthesis;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229910.peg.1419 CDS CP007502.1 1404472 1403564 -1 - 909 Putative surface protein - none -
fig|6666666.229910.peg.1420 CDS CP007502.1 1404591 1405280 3 + 690 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses;
Ribosome biogenesis bacterial;
tRNA modification Bacteria
fig|6666666.229910.peg.1421 CDS CP007502.1 1405325 1406188 2 + 864 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229910.peg.1422 CDS CP007502.1 1406271 1406594 3 + 324 Alkylphosphonate utilization operon protein PhnA - none -
fig|6666666.229910.peg.1423 CDS CP007502.1 1407562 1406645 -1 - 918 hypothetical protein - none -
fig|6666666.229910.peg.1424 CDS CP007502.1 1408341 1407610 -3 - 732 KAP P-loop domain protein - none -
fig|6666666.229910.peg.1425 CDS CP007502.1 1408897 1409166 1 + 270 hypothetical protein - none -
fig|6666666.229910.peg.1426 CDS CP007502.1 1409794 1410042 1 + 249 Esterase/lipase - none -
fig|6666666.229910.peg.1427 CDS CP007502.1 1410039 1411157 3 + 1119 Esterase/lipase - none -
fig|6666666.229910.peg.1428 CDS CP007502.1 1412804 1411431 -2 - 1374 RND efflux system, outer membrane lipoprotein CmeC Multidrug Resistance Efflux Pumps
fig|6666666.229910.peg.1429 CDS CP007502.1 1414815 1412881 -3 - 1935 Macrolide export ATP-binding/permease protein MacB (EC 3.6.3.-) Multidrug Resistance Efflux Pumps
fig|6666666.229910.peg.1430 CDS CP007502.1 1416019 1414835 -1 - 1185 Macrolide-specific efflux protein MacA Multidrug Resistance Efflux Pumps
fig|6666666.229910.peg.1431 CDS CP007502.1 1416220 1417911 1 + 1692 Glutaminyl-tRNA synthetase (EC 6.1.1.18) tRNA aminoacylation, Glu and Gln
fig|6666666.229910.peg.1432 CDS CP007502.1 1417983 1418417 3 + 435 YcgN (Fragment) CBSS-243277.1.peg.4359
fig|6666666.229910.peg.1433 CDS CP007502.1 1418517 1419077 3 + 561 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) Glycogen metabolism;
Glycogen metabolism cluster;
Maltose and Maltodextrin Utilization;
Maltose utilization cluster
fig|6666666.229910.peg.1434 CDS CP007502.1 1419074 1421269 2 + 2196 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) Glycogen metabolism;
Glycogen metabolism cluster
fig|6666666.229910.peg.1435 CDS CP007502.1 1421266 1422156 1 + 891 Glycogen debranching enzyme (EC 3.2.1.-) Glycogen metabolism;
Glycogen metabolism cluster
fig|6666666.229910.peg.1436 CDS CP007502.1 1422190 1423275 1 + 1086 Glycogen debranching enzyme (EC 3.2.1.-) Glycogen metabolism;
Glycogen metabolism cluster
fig|6666666.229910.peg.1437 CDS CP007502.1 1423302 1424612 3 + 1311 Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27) Glycogen metabolism;
Glycogen metabolism cluster
fig|6666666.229910.peg.1438 CDS CP007502.1 1424814 1426253 3 + 1440 Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21) Glycogen metabolism;
Glycogen metabolism cluster
fig|6666666.229910.peg.1439 CDS CP007502.1 1426376 1428841 2 + 2466 Glycogen phosphorylase (EC 2.4.1.1) Glycogen metabolism;
Glycogen metabolism cluster;
Maltose and Maltodextrin Utilization
fig|6666666.229910.peg.1440 CDS CP007502.1 1429006 1428866 -1 - 141 hypothetical protein - none -
fig|6666666.229910.peg.1441 CDS CP007502.1 1429565 1428960 -2 - 606 DedA protein DedA family of inner membrane proteins;
Uptake of selenate and selenite
fig|6666666.229910.peg.1442 CDS CP007502.1 1429779 1430066 3 + 288 LSU ribosomal protein L25p Transcription repair cluster
fig|6666666.229910.peg.1443 CDS CP007502.1 1430214 1430822 3 + 609 lipoprotein HlpB - none -
fig|6666666.229910.peg.1444 CDS CP007502.1 1430970 1431251 3 + 282 Murein-DD-endopeptidase (EC 3.4.99.-) Peptidoglycan Biosynthesis
fig|6666666.229910.peg.1445 CDS CP007502.1 1431257 1431847 2 + 591 Murein-DD-endopeptidase (EC 3.4.99.-) Peptidoglycan Biosynthesis
fig|6666666.229910.peg.1446 CDS CP007502.1 1432025 1433353 2 + 1329 Chromosome partition protein MukF DNA structural proteins, bacterial;
MukBEF Chromosome Condensation
fig|6666666.229910.peg.1447 CDS CP007502.1 1433381 1433518 2 + 138 hypothetical protein - none -
fig|6666666.229910.peg.1448 CDS CP007502.1 1433533 1436706 1 + 3174 Putative 2-acylglycerophosphoethanolamine acyltransferase / acyl-acyl carrier protein synthetase (EC 6.2.1.20) - none -
fig|6666666.229910.peg.1449 CDS CP007502.1 1436703 1436996 3 + 294 Putative 2-acylglycerophosphoethanolamine acyltransferase / acyl-acyl carrier protein synthetase (EC 6.2.1.20) - none -
fig|6666666.229910.peg.1450 CDS CP007502.1 1437017 1437757 2 + 741 Chromosome partition protein MukE DNA structural proteins, bacterial;
MukBEF Chromosome Condensation
fig|6666666.229910.peg.1451 CDS CP007502.1 1437757 1442247 1 + 4491 Chromosome partition protein MukB DNA structural proteins, bacterial;
MukBEF Chromosome Condensation
fig|6666666.229910.peg.1452 CDS CP007502.1 1442323 1443177 1 + 855 Integral membrane protein - none -
fig|6666666.229910.peg.1453 CDS CP007502.1 1443209 1444633 2 + 1425 Exodeoxyribonuclease I (EC 3.1.11.1) DNA Repair Base Excision
fig|6666666.229910.peg.1454 CDS CP007502.1 1444881 1445054 3 + 174 hypothetical protein - none -
fig|6666666.229910.peg.1455 CDS CP007502.1 1445228 1445353 2 + 126 Mobile element protein - none -
fig|6666666.229910.peg.1456 CDS CP007502.1 1445347 1445856 1 + 510 Mobile element protein - none -
fig|6666666.229910.peg.1457 CDS CP007502.1 1446521 1446643 2 + 123 hypothetical protein - none -
fig|6666666.229910.peg.1458 CDS CP007502.1 1447321 1447806 1 + 486 Ferritin-like protein 2 - none -
fig|6666666.229910.peg.1459 CDS CP007502.1 1447822 1448319 1 + 498 Ferritin-like protein 2 - none -
fig|6666666.229910.peg.1460 CDS CP007502.1 1448551 1448381 -1 - 171 hypothetical protein - none -
fig|6666666.229910.peg.1461 CDS CP007502.1 1448660 1449433 2 + 774 Fumarate and nitrate reduction regulatory protein Oxidative stress
fig|6666666.229910.peg.1462 CDS CP007502.1 1449552 1450484 3 + 933 Universal stress protein E Universal stress protein family
fig|6666666.229910.peg.1463 CDS CP007502.1 1450611 1451447 3 + 837 ABC-type Co2+ transport system, periplasmic component - none -
fig|6666666.229910.peg.1464 CDS CP007502.1 1454138 1451532 -2 - 2607 DNA topoisomerase I (EC 5.99.1.2) CBSS-272943.3.peg.1367;
Conserved gene cluster associated with Met-tRNA formyltransferase;
DNA topoisomerases, Type I, ATP-independent
fig|6666666.229910.peg.1465 CDS CP007502.1 1455212 1454376 -2 - 837 COG0613, Predicted metal-dependent phosphoesterases (PHP family) YrdC-YciO-Sua5 protein family;
tRNA modification Bacteria
fig|6666666.229910.peg.1466 CDS CP007502.1 1456245 1455226 -3 - 1020 Dihydroorotate dehydrogenase (EC 1.3.3.1) De Novo Pyrimidine Synthesis
fig|6666666.229910.peg.1467 CDS CP007502.1 1458927 1456318 -3 - 2610 Membrane alanine aminopeptidase N (EC 3.4.11.2) Aminopeptidases (EC 3.4.11.-)
fig|6666666.229910.peg.1468 CDS CP007502.1 1459349 1460539 2 + 1191 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229910.peg.1469 CDS CP007502.1 1461153 1460590 -3 - 564 Transcriptional regulator, TetR family - none -
fig|6666666.229910.peg.1470 CDS CP007502.1 1461301 1462281 1 + 981 HlyD family secretion protein - none -
fig|6666666.229910.peg.1471 CDS CP007502.1 1462284 1465028 3 + 2745 ABC-type multidrug transport system, permease component - none -
fig|6666666.229910.peg.1472 CDS CP007502.1 1465030 1466157 1 + 1128 ABC-type multidrug transport system, permease component - none -
fig|6666666.229910.peg.1473 CDS CP007502.1 1466177 1467595 2 + 1419 Outer membrane component of tripartite multidrug resistance system Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria
fig|6666666.229910.peg.1474 CDS CP007502.1 1467573 1467704 3 + 132 hypothetical protein - none -
fig|6666666.229910.peg.1475 CDS CP007502.1 1467723 1468742 3 + 1020 Vitamin B12 ABC transporter, permease component BtuC - none -
fig|6666666.229910.peg.1476 CDS CP007502.1 1469070 1469540 3 + 471 Glutathione synthetase (EC 6.3.2.3) Cluster containing Glutathione synthetase;
Glutathione: Biosynthesis and gamma-glutamyl cycle;
Heat shock dnaK gene cluster extended
fig|6666666.229910.peg.1477 CDS CP007502.1 1470702 1470055 -3 - 648 Repressor protein CI - none -
fig|6666666.229910.peg.1478 CDS CP007502.1 1471826 1470993 -2 - 834 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins Ton and Tol transport systems
fig|6666666.229910.peg.1479 CDS CP007502.1 1472670 1471921 -3 - 750 ABC transporter ATP-binding protein - none -
fig|6666666.229910.peg.1480 CDS CP007502.1 1473680 1472667 -2 - 1014 Vitamin B12 ABC transporter, permease component BtuC - none -
fig|6666666.229910.peg.1481 CDS CP007502.1 1474681 1473680 -1 - 1002 ABC transporter, solute-binding protein - none -
fig|6666666.229910.peg.1482 CDS CP007502.1 1474892 1475389 2 + 498 FIG00697418: hypothetical protein - none -
fig|6666666.229910.peg.1483 CDS CP007502.1 1475391 1476368 3 + 978 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins Ton and Tol transport systems
fig|6666666.229910.peg.1484 CDS CP007502.1 1476400 1477380 1 + 981 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins Ton and Tol transport systems
fig|6666666.229910.peg.1485 CDS CP007502.1 1477886 1477470 -2 - 417 putative membrane protein - none -
fig|6666666.229910.peg.1486 CDS CP007502.1 1478027 1478992 2 + 966 tRNA(Cytosine32)-2-thiocytidine synthetase CBSS-326442.4.peg.1852;
tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229910.peg.1487 CDS CP007502.1 1479455 1479087 -2 - 369 Probable lipoprotein nlpC precursor - none -
fig|6666666.229910.peg.1488 CDS CP007502.1 1479923 1479627 -2 - 297 Integration host factor alpha subunit DNA structural proteins, bacterial
fig|6666666.229910.peg.1489 CDS CP007502.1 1482317 1479927 -2 - 2391 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) tRNA aminoacylation, Phe
fig|6666666.229910.peg.1490 CDS CP007502.1 1483326 1482337 -3 - 990 Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20) tRNA aminoacylation, Phe
fig|6666666.229910.peg.1491 CDS CP007502.1 1484541 1483666 -3 - 876 Probable protease htpX homolog - none -
fig|6666666.229910.peg.1492 CDS CP007502.1 1485224 1486159 2 + 936 Arabinose 5-phosphate isomerase (EC 5.3.1.13) KDO2-Lipid A biosynthesis
fig|6666666.229910.peg.1493 CDS CP007502.1 1486159 1486713 1 + 555 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC 3.1.3.45) KDO2-Lipid A biosynthesis
fig|6666666.229910.peg.1494 CDS CP007502.1 1486881 1488428 3 + 1548 Anthranilate synthase, aminase component (EC 4.1.3.27) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229910.peg.1495 CDS CP007502.1 1488439 1489029 1 + 591 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229910.peg.1496 CDS CP007502.1 1489103 1489495 2 + 393 putative - none -
fig|6666666.229910.peg.1497 CDS CP007502.1 1489507 1490508 1 + 1002 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) Auxin biosynthesis;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229910.peg.1498 CDS CP007502.1 1490603 1490881 2 + 279 HigB toxin protein Toxin-antitoxin replicon stabilization systems
fig|6666666.229910.peg.1499 CDS CP007502.1 1490891 1491169 2 + 279 HigA protein (antitoxin to HigB) Toxin-antitoxin replicon stabilization systems
fig|6666666.229910.peg.1500 CDS CP007502.1 1491178 1491930 1 + 753 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24) Auxin biosynthesis;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis;
Tryptophan synthesis
fig|6666666.229910.peg.1501 CDS CP007502.1 1491945 1492604 3 + 660 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24) Auxin biosynthesis;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis;
Tryptophan synthesis
fig|6666666.229910.peg.1502 CDS CP007502.1 1493059 1493334 1 + 276 [NiFe] hydrogenase metallocenter assembly protein HybG G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229910.peg.1503 CDS CP007502.1 1494359 1494625 2 + 267 Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3) Na+ translocating decarboxylases and related biotin-dependent enzymes;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229910.peg.1504 CDS CP007502.1 1494641 1496437 2 + 1797 Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3) Na+ translocating decarboxylases and related biotin-dependent enzymes;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229910.peg.1505 CDS CP007502.1 1496448 1497755 3 + 1308 Oxaloacetate decarboxylase beta chain (EC 4.1.1.3) Na+ translocating decarboxylases and related biotin-dependent enzymes;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229910.peg.1506 CDS CP007502.1 1497823 1497954 1 + 132 hypothetical protein - none -
fig|6666666.229910.peg.1507 CDS CP007502.1 1499337 1498159 -3 - 1179 Outer membrane receptor for lactoferrin or transferrin, TonB-dependent protein A - none -
fig|6666666.229910.peg.1508 CDS CP007502.1 1500603 1499590 -3 - 1014 Outer membrane receptor for lactoferrin or transferrin, TonB-dependent protein A - none -
fig|6666666.229910.peg.1509 CDS CP007502.1 1501322 1501110 -2 - 213 hypothetical protein - none -
fig|6666666.229910.peg.1510 CDS CP007502.1 1501349 1502047 2 + 699 3-hydroxypropionate dehydrogenase (EC 1.1.1.298) - none -
fig|6666666.229910.peg.1511 CDS CP007502.1 1502057 1503250 2 + 1194 Tryptophan synthase beta chain (EC 4.2.1.20) Auxin biosynthesis;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229910.peg.1512 CDS CP007502.1 1503253 1504059 1 + 807 Tryptophan synthase alpha chain (EC 4.2.1.20) Auxin biosynthesis;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229910.peg.1513 CDS CP007502.1 1504334 1506019 2 + 1686 Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) Ribonucleotide reduction
fig|6666666.229910.peg.1514 CDS CP007502.1 1506152 1507141 2 + 990 Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) Ribonucleotide reduction
fig|6666666.229910.peg.1515 CDS CP007502.1 1507427 1508833 2 + 1407 Pyruvate kinase (EC 2.7.1.40) Entner-Doudoroff Pathway;
Glycerate metabolism;
Glycolysis and Gluconeogenesis;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229910.peg.1516 CDS CP007502.1 1509239 1508937 -2 - 303 Autoinducer 2 (AI-2) modifying protein LsrG Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229910.peg.1517 CDS CP007502.1 1509895 1509272 -1 - 624 Autoinducer 2 (AI-2) aldolase LsrF (EC 4.2.1.-) Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229910.peg.1518 CDS CP007502.1 1510146 1509895 -3 - 252 Autoinducer 2 (AI-2) aldolase LsrF (EC 4.2.1.-) Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229910.peg.1519 CDS CP007502.1 1511267 1510170 -2 - 1098 Autoinducer 2 (AI-2) ABC transport system, periplasmic AI-2 binding protein LsrB Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229910.peg.1520 CDS CP007502.1 1512296 1511292 -2 - 1005 Autoinducer 2 (AI-2) ABC transport system, membrane channel protein LsrD Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229910.peg.1521 CDS CP007502.1 1512426 1512310 -3 - 117 Autoinducer 2 (AI-2) ABC transport system, membrane channel protein LsrC Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229910.peg.1522 CDS CP007502.1 1513342 1512419 -1 - 924 Autoinducer 2 (AI-2) ABC transport system, membrane channel protein LsrC Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229910.peg.1523 CDS CP007502.1 1514652 1513339 -3 - 1314 Autoinducer 2 (AI-2) ABC transport system, fused AI2 transporter subunits and ATP-binding component Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229910.peg.1524 CDS CP007502.1 1514866 1514639 -1 - 228 Autoinducer 2 (AI-2) ABC transport system, fused AI2 transporter subunits and ATP-binding component Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229910.peg.1525 CDS CP007502.1 1515109 1516074 1 + 966 LsrR, transcriptional repressor of lsr operon Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229910.peg.1526 CDS CP007502.1 1516124 1517680 2 + 1557 Autoinducer 2 (AI-2) kinase LsrK (EC 2.7.1.-) Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229910.peg.1527 CDS CP007502.1 1518515 1517787 -2 - 729 Dethiobiotin synthetase (EC 6.3.3.3) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229910.peg.1528 CDS CP007502.1 1519821 1518592 -3 - 1230 Mlc, transcriptional repressor of MalT (the transcriptional activator of maltose regulon) and manXYZ operon Maltose and Maltodextrin Utilization
fig|6666666.229910.peg.1529 CDS CP007502.1 1520017 1521420 1 + 1404 Asparaginyl-tRNA synthetase (EC 6.1.1.22) tRNA aminoacylation, Asp and Asn;
tRNA modification Archaea
fig|6666666.229910.peg.1530 CDS CP007502.1 1522044 1521583 -3 - 462 Stringent starvation protein B Carbon Starvation
fig|6666666.229910.peg.1531 CDS CP007502.1 1522697 1522056 -2 - 642 Stringent starvation protein A Carbon Starvation
fig|6666666.229910.peg.1532 CDS CP007502.1 1523352 1522897 -3 - 456 Molybdenum cofactor biosynthesis protein MoaE Molybdenum cofactor biosynthesis;
ar-104-EC Molybdenum cofactor biosynthesis moaABCDE
fig|6666666.229910.peg.1533 CDS CP007502.1 1523601 1523353 -3 - 249 Molybdenum cofactor biosynthesis protein MoaD Molybdenum cofactor biosynthesis;
ar-104-EC Molybdenum cofactor biosynthesis moaABCDE
fig|6666666.229910.peg.1534 CDS CP007502.1 1524122 1523601 -2 - 522 Molybdenum cofactor biosynthesis protein MoaC Molybdenum cofactor biosynthesis;
ar-104-EC Molybdenum cofactor biosynthesis moaABCDE
fig|6666666.229910.peg.1535 CDS CP007502.1 1525148 1524135 -2 - 1014 Molybdenum cofactor biosynthesis protein MoaA Molybdenum cofactor biosynthesis;
ar-104-EC Molybdenum cofactor biosynthesis moaABCDE
fig|6666666.229910.peg.1536 CDS CP007502.1 1525506 1526474 3 + 969 FIG002813: LPPG:FO 2-phospho-L-lactate transferase like, CofD-like - none -
fig|6666666.229910.peg.1537 CDS CP007502.1 1527375 1526539 -3 - 837 Putative DNA-binding protein in cluster with Type I restriction-modification system Restriction-Modification System
fig|6666666.229910.peg.1538 CDS CP007502.1 1527714 1528418 3 + 705 Alpha-aspartyl dipeptidase Peptidase E (EC 3.4.13.21) Dipeptidases (EC 3.4.13.-)
fig|6666666.229910.peg.1539 CDS CP007502.1 1529959 1528502 -1 - 1458 tRNA S(4)U 4-thiouridine synthase (former ThiI) / Rhodanese-like domain required for thiamine synthesis Thiamin biosynthesis;
Thiamin biosynthesis;
tRNA modification Archaea;
tRNA modification Archaea;
tRNA modification Bacteria;
tRNA modification Bacteria
fig|6666666.229910.peg.1540 CDS CP007502.1 1530265 1531365 1 + 1101 Cytochrome c-type protein TorY - none -
fig|6666666.229910.peg.1541 CDS CP007502.1 1531426 1533906 1 + 2481 Trimethylamine-N-oxide reductase (EC 1.6.6.9) - none -
fig|6666666.229910.peg.1542 CDS CP007502.1 1534756 1533977 -1 - 780 Protein of unknown function DUF419 - none -
fig|6666666.229910.peg.1543 CDS CP007502.1 1534986 1536443 3 + 1458 2-oxoglutarate/malate translocator - none -
fig|6666666.229910.peg.1544 CDS CP007502.1 1536658 1536912 1 + 255 RelB/StbD replicon stabilization protein (antitoxin to RelE/StbE) Toxin-antitoxin replicon stabilization systems
fig|6666666.229910.peg.1545 CDS CP007502.1 1536909 1537061 3 + 153 StbE replicon stabilization toxin - none -
fig|6666666.229910.peg.1546 CDS CP007502.1 1537045 1537191 1 + 147 RelE/StbE replicon stabilization toxin Toxin-antitoxin replicon stabilization systems
fig|6666666.229910.peg.1547 CDS CP007502.1 1537989 1537204 -3 - 786 tRNA pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses;
tRNA modification Archaea;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229910.peg.1548 CDS CP007502.1 1538542 1538150 -1 - 393 SSU ribosomal protein S9p (S16e) - none -
fig|6666666.229910.peg.1549 CDS CP007502.1 1538987 1538559 -2 - 429 LSU ribosomal protein L13p (L13Ae) - none -
fig|6666666.229910.peg.1550 CDS CP007502.1 1539825 1539229 -3 - 597 hypothetical protein - none -
fig|6666666.229910.peg.1551 CDS CP007502.1 1541817 1539838 -3 - 1980 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) DNA repair, bacterial RecBCD pathway
fig|6666666.229910.peg.1552 CDS CP007502.1 1545482 1541817 -2 - 3666 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) DNA repair, bacterial RecBCD pathway
fig|6666666.229910.peg.1553 CDS CP007502.1 1545909 1545553 -3 - 357 DsrE-related protein - none -
fig|6666666.229910.peg.1554 CDS CP007502.1 1546864 1546334 -1 - 531 3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabA form (EC 4.2.1.59) Fatty Acid Biosynthesis FASII
fig|6666666.229910.peg.1555 CDS CP007502.1 1548791 1547007 -2 - 1785 ATP-dependent protease La (EC 3.4.21.53) Type II Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229910.peg.1556 CDS CP007502.1 1548938 1549384 2 + 447 Macrodomain Ter protein YcbG - none -
fig|6666666.229910.peg.1557 CDS CP007502.1 1549659 1549450 -3 - 210 Cold shock protein CspD Cold shock, CspA family of proteins
fig|6666666.229910.peg.1558 CDS CP007502.1 1550015 1549866 -2 - 150 hypothetical protein - none -
fig|6666666.229910.peg.1559 CDS CP007502.1 1550782 1550069 -1 - 714 tRNA pseudouridine synthase C (EC 4.2.1.70) RNA pseudouridine syntheses;
tRNA modification Bacteria
fig|6666666.229910.peg.1560 CDS CP007502.1 1551120 1550779 -3 - 342 Hypothetical protein YqcC (clustered with tRNA pseudouridine synthase C) - none -
fig|6666666.229910.peg.1561 CDS CP007502.1 1551188 1551982 2 + 795 Zn-ribbon-containing, possibly nucleic-acid-binding protein - none -
fig|6666666.229910.peg.1562 CDS CP007502.1 1551991 1552830 1 + 840 NADPH dependent preQ0 reductase (EC 1.7.1.13) - none -
fig|6666666.229910.peg.1563 CDS CP007502.1 1552790 1552951 2 + 162 hypothetical protein - none -
fig|6666666.229910.peg.1564 CDS CP007502.1 1553534 1552980 -2 - 555 Phosphoglycerate transport system transcriptional regulatory protein PgtA Phosphoglycerate transport system
fig|6666666.229910.peg.1565 CDS CP007502.1 1553913 1553494 -3 - 420 Phosphoglycerate transport system transcriptional regulatory protein PgtA Phosphoglycerate transport system
fig|6666666.229910.peg.1566 CDS CP007502.1 1554122 1553919 -2 - 204 Phosphoglycerate transport system transcriptional regulatory protein PgtA Phosphoglycerate transport system
fig|6666666.229910.peg.1567 CDS CP007502.1 1556097 1554115 -3 - 1983 Phosphoglycerate transport system sensor protein PgtB (EC 2.7.3.-) Phosphoglycerate transport system
fig|6666666.229910.peg.1568 CDS CP007502.1 1557080 1556094 -2 - 987 Phosphoglycerate transport regulatory protein PgtC Phosphoglycerate transport system
fig|6666666.229910.peg.1569 CDS CP007502.1 1557718 1558599 1 + 882 Ferric iron ABC transporter, ATP-binding protein Iron acquisition in Streptococcus
fig|6666666.229910.peg.1570 CDS CP007502.1 1559263 1558727 -1 - 537 Putative transporting ATPase - none -
fig|6666666.229910.peg.1571 CDS CP007502.1 1561312 1559360 -1 - 1953 Cell division protein FtsH (EC 3.4.24.-) Bacterial Cell Division;
Cell division-ribosomal stress proteins cluster;
Folate biosynthesis cluster
fig|6666666.229910.peg.1572 CDS CP007502.1 1562048 1561419 -2 - 630 Cell division protein FtsJ / Ribosomal RNA large subunit methyltransferase E (EC 2.1.1.-) ## LSU rRNA Um2552 Bacterial Cell Division;
RNA methylation
fig|6666666.229910.peg.1573 CDS CP007502.1 1563007 1562183 -1 - 825 Formyltetrahydrofolate deformylase (EC 3.5.1.10) 5-FCL-like protein;
One-carbon metabolism by tetrahydropterines
fig|6666666.229910.peg.1574 CDS CP007502.1 1563457 1563059 -1 - 399 DNA-binding protein H-NS - none -
fig|6666666.229910.peg.1575 CDS CP007502.1 1563898 1565430 1 + 1533 Na+/H+ antiporter - none -
fig|6666666.229910.peg.1576 CDS CP007502.1 1572312 1571485 -3 - 828 Glutamate racemase (EC 5.1.1.3) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Peptidoglycan Biosynthesis
fig|6666666.229910.peg.1577 CDS CP007502.1 1572840 1572343 -3 - 498 Chorismate--pyruvate lyase (EC 4.1.3.40) Ubiquinone Biosynthesis
fig|6666666.229910.peg.1578 CDS CP007502.1 1574914 1572833 -1 - 2082 ATP-dependent DNA helicase RecG (EC 3.6.1.-) - none -
fig|6666666.229910.peg.1579 CDS CP007502.1 1577038 1574915 -1 - 2124 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II / Guanosine-3@1,5@1-bis(diphosphate) 3@1-pyrophosphohydrolase (EC 3.1.7.2) CBSS-176299.4.peg.1292;
CBSS-176299.4.peg.1292;
Stringent Response, (p)ppGpp metabolism;
Stringent Response, (p)ppGpp metabolism
fig|6666666.229910.peg.1580 CDS CP007502.1 1577350 1577084 -1 - 267 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) CBSS-176299.4.peg.1292;
RNA polymerase bacterial
fig|6666666.229910.peg.1581 CDS CP007502.1 1578118 1577408 -1 - 711 Guanylate kinase (EC 2.7.4.8) CBSS-323097.3.peg.2594;
Purine conversions
fig|6666666.229910.peg.1582 CDS CP007502.1 1578288 1579292 3 + 1005 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis;
Pyridoxin (Vitamin B6) Biosynthesis
fig|6666666.229910.peg.1583 CDS CP007502.1 1579802 1579386 -2 - 417 conserved hypothetical protein; possible membrane protein - none -
fig|6666666.229910.peg.1584 CDS CP007502.1 1579815 1580303 3 + 489 Putative oligoketide cyclase/lipid transport protein, similarity with yeast ubiquinone-binding protein YOL008W - none -
fig|6666666.229910.peg.1585 CDS CP007502.1 1580296 1580589 1 + 294 UPF0125 protein yfjF - none -
fig|6666666.229910.peg.1586 CDS CP007502.1 1580622 1581815 3 + 1194 FIG074102: hypothetical protein - none -
fig|6666666.229910.peg.1587 CDS CP007502.1 1581822 1583156 3 + 1335 Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) DNA repair, bacterial;
Purine salvage cluster
fig|6666666.229910.peg.1588 CDS CP007502.1 1584016 1583162 -1 - 855 FIG000506: Predicted P-loop-containing kinase - none -
fig|6666666.229910.peg.1589 CDS CP007502.1 1584565 1584044 -1 - 522 PTS IIA-like nitrogen-regulatory protein PtsN - none -
fig|6666666.229910.peg.1590 CDS CP007502.1 1585294 1584569 -1 - 726 Lipopolysaccharide ABC transporter, ATP-binding protein LptB KDO2-Lipid A biosynthesis;
Lipopolysaccharide assembly
fig|6666666.229910.peg.1591 CDS CP007502.1 1585818 1585300 -3 - 519 LptA, protein essential for LPS transport across the periplasm KDO2-Lipid A biosynthesis;
Lipopolysaccharide assembly
fig|6666666.229910.peg.1592 CDS CP007502.1 1586374 1585799 -1 - 576 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters Lipopolysaccharide assembly
fig|6666666.229910.peg.1593 CDS CP007502.1 1586658 1587455 3 + 798 Uncharacterized ABC transporter, ATP-binding protein YrbF CBSS-12149.1.peg.3301;
Lipopolysaccharide assembly
fig|6666666.229910.peg.1594 CDS CP007502.1 1587449 1588234 2 + 786 Uncharacterized ABC transporter, permease component YrbE CBSS-12149.1.peg.3301;
Lipopolysaccharide assembly
fig|6666666.229910.peg.1595 CDS CP007502.1 1588257 1588766 3 + 510 Uncharacterized ABC transporter, periplasmic component YrbD CBSS-12149.1.peg.3301;
Lipopolysaccharide assembly
fig|6666666.229910.peg.1596 CDS CP007502.1 1588795 1589436 1 + 642 Uncharacterized ABC transporter, auxiliary component YrbC CBSS-12149.1.peg.3301;
Lipopolysaccharide assembly
fig|6666666.229910.peg.1597 CDS CP007502.1 1589530 1589799 1 + 270 Uncharacterized protein YrbB CBSS-12149.1.peg.3301
fig|6666666.229910.peg.1598 CDS CP007502.1 1589799 1590056 3 + 258 YrbA protein Broadly distributed proteins not in subsystems;
CBSS-12149.1.peg.3301
fig|6666666.229910.peg.1599 CDS CP007502.1 1590073 1591344 1 + 1272 UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7) CBSS-12149.1.peg.3301;
Peptidoglycan Biosynthesis;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229910.peg.1600 CDS CP007502.1 1592095 1593042 1 + 948 Putative secretion ATPase - none -
fig|6666666.229910.peg.1601 CDS CP007502.1 1594452 1593388 -3 - 1065 glycosyl transferase, group 2 family protein - none -
fig|6666666.229910.peg.1602 CDS CP007502.1 1595244 1594954 -3 - 291 FIG00696346: hypothetical protein - none -
fig|6666666.229910.peg.1603 CDS CP007502.1 1595447 1596877 2 + 1431 Long-chain fatty acid transport protein - none -
fig|6666666.229910.peg.1604 CDS CP007502.1 1596954 1597493 3 + 540 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) DNA repair, bacterial
fig|6666666.229910.peg.1605 CDS CP007502.1 1597490 1598158 2 + 669 DNA mismatch repair endonuclease MutH DNA repair, bacterial
fig|6666666.229910.peg.1606 CDS CP007502.1 1598223 1598948 3 + 726 Integral membrane protein TerC - none -
fig|6666666.229910.peg.1607 CDS CP007502.1 1599240 1599404 3 + 165 hypothetical protein - none -
fig|6666666.229910.peg.1608 CDS CP007502.1 1599586 1599711 1 + 126 Mobile element protein - none -
fig|6666666.229910.peg.1609 CDS CP007502.1 1599705 1600214 3 + 510 Mobile element protein - none -
fig|6666666.229910.peg.1610 CDS CP007502.1 1601719 1600310 -1 - 1410 Glutamine synthetase type I (EC 6.3.1.2) Ammonia assimilation;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Glutamine synthetases;
Peptidoglycan Biosynthesis
fig|6666666.229910.peg.1611 CDS CP007502.1 1602106 1603959 1 + 1854 GTP-binding protein TypA/BipA Universal GTPases
fig|6666666.229910.peg.1612 CDS CP007502.1 1604069 1603956 -2 - 114 hypothetical protein - none -
fig|6666666.229910.peg.1613 CDS CP007502.1 1604185 1606845 1 + 2661 TolA protein Ton and Tol transport systems
fig|6666666.229910.peg.1614 CDS CP007502.1 1607373 1606909 -3 - 465 Thiol peroxidase, Bcp-type (EC 1.11.1.15) CBSS-316057.3.peg.3521;
Thioredoxin-disulfide reductase
fig|6666666.229910.peg.1615 CDS CP007502.1 1607531 1608424 2 + 894 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229910.peg.1616 CDS CP007502.1 1608538 1609242 1 + 705 Outer membrane protein NlpB, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and YfgL); Lipoprotein-34 precursor Lipopolysaccharide assembly
fig|6666666.229910.peg.1617 CDS CP007502.1 1609373 1609531 2 + 159 Outer membrane protein NlpB, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and YfgL); Lipoprotein-34 precursor Lipopolysaccharide assembly
fig|6666666.229910.peg.1618 CDS CP007502.1 1609666 1611177 1 + 1512 L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1) / Osmotic adaptation Choline and Betaine Uptake and Betaine Biosynthesis
fig|6666666.229910.peg.1619 CDS CP007502.1 1611492 1612328 3 + 837 L-proline glycine betaine ABC transport system permease protein ProV (TC 3.A.1.12.1) Choline and Betaine Uptake and Betaine Biosynthesis
fig|6666666.229910.peg.1620 CDS CP007502.1 1613068 1612373 -1 - 696 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC A Hypothetical Protein Related to Proline Metabolism;
CBSS-630.2.peg.3360
fig|6666666.229910.peg.1621 CDS CP007502.1 1614449 1613061 -2 - 1389 Nicotinamide phosphoribosyltransferase (EC 2.4.2.12) NAD and NADP cofactor biosynthesis global
fig|6666666.229910.peg.1622 CDS CP007502.1 1614588 1614719 3 + 132 hypothetical protein - none -
fig|6666666.229910.peg.1623 CDS CP007502.1 1614808 1617255 1 + 2448 Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) CBSS-216591.1.peg.168;
Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch;
Methionine Biosynthesis;
Threonine and Homoserine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229910.peg.1624 CDS CP007502.1 1617268 1618212 1 + 945 Homoserine kinase (EC 2.7.1.39) CBSS-269482.1.peg.1294;
Methionine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229910.peg.1625 CDS CP007502.1 1618240 1618680 1 + 441 hypothetical protein - none -
fig|6666666.229910.peg.1626 CDS CP007502.1 1618736 1620010 2 + 1275 Threonine synthase (EC 4.2.3.1) Threonine and Homoserine Biosynthesis
fig|6666666.229910.peg.1627 CDS CP007502.1 1620045 1620788 3 + 744 4@1-phosphopantetheinyl transferase (EC 2.7.8.-) Fatty Acid Biosynthesis FASII
fig|6666666.229910.peg.1628 CDS CP007502.1 1620884 1622137 2 + 1254 HflK protein Hfl operon;
Scaffold proteins for [4Fe-4S] cluster assembly (MRP family)
fig|6666666.229910.peg.1629 CDS CP007502.1 1622137 1623024 1 + 888 HflC protein Hfl operon;
Scaffold proteins for [4Fe-4S] cluster assembly (MRP family)
fig|6666666.229910.peg.1630 CDS CP007502.1 1623312 1623157 -3 - 156 hypothetical protein - none -
fig|6666666.229910.peg.1631 CDS CP007502.1 1623314 1623643 2 + 330 DNA uptake protein and related DNA-binding proteins - none -
fig|6666666.229910.peg.1632 CDS CP007502.1 1623669 1624349 3 + 681 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) Heat shock dnaK gene cluster extended;
Housecleaning nucleoside triphosphate pyrophosphatases
fig|6666666.229910.peg.1633 CDS CP007502.1 1624388 1624711 2 + 324 PlcB, ORFX, ORFP, ORFB, ORFA, ldh gene - none -
fig|6666666.229910.peg.1634 CDS CP007502.1 1624711 1625880 1 + 1170 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB CBSS-630.2.peg.3360;
Heat shock dnaK gene cluster extended;
Heme and Siroheme Biosynthesis;
Queuosine-Archaeosine Biosynthesis
fig|6666666.229910.peg.1635 CDS CP007502.1 1625979 1626635 3 + 657 Ribose 5-phosphate isomerase A (EC 5.3.1.6) D-ribose utilization;
Pentose phosphate pathway
fig|6666666.229910.peg.1636 CDS CP007502.1 1626654 1627805 3 + 1152 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) Glycine and Serine Utilization;
Pyridoxin (Vitamin B6) Biosynthesis;
Serine Biosynthesis
fig|6666666.229910.peg.1637 CDS CP007502.1 1627896 1628015 3 + 120 hypothetical protein - none -
fig|6666666.229910.peg.1638 CDS CP007502.1 1628197 1629243 1 + 1047 iron chelatin ABC transporter periplasmic-binding protein - none -
fig|6666666.229910.peg.1639 CDS CP007502.1 1629970 1629329 -1 - 642 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) D-Galacturonate and D-Glucuronate Utilization;
Entner-Doudoroff Pathway
fig|6666666.229910.peg.1640 CDS CP007502.1 1631382 1629979 -3 - 1404 Uronate isomerase (EC 5.3.1.12) D-Galacturonate and D-Glucuronate Utilization
fig|6666666.229910.peg.1641 CDS CP007502.1 1632237 1631392 -3 - 846 D-mannonate oxidoreductase (EC 1.1.1.57) D-Galacturonate and D-Glucuronate Utilization
fig|6666666.229910.peg.1642 CDS CP007502.1 1633193 1632249 -2 - 945 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) D-Galacturonate and D-Glucuronate Utilization;
D-gluconate and ketogluconates metabolism;
Entner-Doudoroff Pathway
fig|6666666.229910.peg.1643 CDS CP007502.1 1634240 1633248 -2 - 993 TRAP-type C4-dicarboxylate transport system, periplasmic component TRAP Transporter collection
fig|6666666.229910.peg.1644 CDS CP007502.1 1634953 1636254 1 + 1302 TRAP-type C4-dicarboxylate transport system, large permease component TRAP Transporter collection
fig|6666666.229910.peg.1645 CDS CP007502.1 1636278 1638653 3 + 2376 Alpha-glucosidase (EC 3.2.1.20) D-Galacturonate and D-Glucuronate Utilization;
Maltose and Maltodextrin Utilization
fig|6666666.229910.peg.1646 CDS CP007502.1 1638668 1639423 2 + 756 Hexuronate utilization operon transcriptional repressor ExuR D-Galacturonate and D-Glucuronate Utilization
fig|6666666.229910.peg.1647 CDS CP007502.1 1639443 1640627 3 + 1185 Mannonate dehydratase (EC 4.2.1.8) D-Galacturonate and D-Glucuronate Utilization
fig|6666666.229910.peg.1648 CDS CP007502.1 1640665 1641222 1 + 558 hypothetical protein - none -
fig|6666666.229910.peg.1649 CDS CP007502.1 1641652 1642542 1 + 891 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229910.peg.1650 CDS CP007502.1 1644322 1642568 -1 - 1755 Putative sulfate permease - none -
fig|6666666.229910.peg.1651 CDS CP007502.1 1644753 1647170 3 + 2418 ATP-dependent protease La (EC 3.4.21.53) Type I Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229910.peg.1652 CDS CP007502.1 1649082 1647232 -3 - 1851 RNA polymerase sigma factor RpoD CBSS-349161.4.peg.2417;
Macromolecular synthesis operon;
Transcription initiation, bacterial sigma factors
fig|6666666.229910.peg.1653 CDS CP007502.1 1650915 1649158 -3 - 1758 DNA primase (EC 2.7.7.-) CBSS-349161.4.peg.2417;
Macromolecular synthesis operon
fig|6666666.229910.peg.1654 CDS CP007502.1 1651252 1651037 -1 - 216 SSU ribosomal protein S21p Macromolecular synthesis operon
fig|6666666.229910.peg.1655 CDS CP007502.1 1651287 1651454 3 + 168 hypothetical protein - none -
fig|6666666.229910.peg.1656 CDS CP007502.1 1651477 1652505 1 + 1029 TsaD/Kae1/Qri7 protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Macromolecular synthesis operon;
YgjD and YeaZ;
YrdC-YciO-Sua5 protein family
fig|6666666.229910.peg.1657 CDS CP007502.1 1652570 1652803 2 + 234 unknown - none -
fig|6666666.229910.peg.1658 CDS CP007502.1 1652806 1653303 1 + 498 Thymidine kinase (EC 2.7.1.21) pyrimidine conversions
fig|6666666.229910.peg.1659 CDS CP007502.1 1655464 1653452 -1 - 2013 DNA ligase (EC 6.5.1.2) DNA Repair Base Excision
fig|6666666.229910.peg.1660 CDS CP007502.1 1656603 1655566 -3 - 1038 Cell division protein ZipA Bacterial Cytoskeleton
fig|6666666.229910.peg.1661 CDS CP007502.1 1656743 1657567 2 + 825 Sulfate transporter, CysZ-type Cysteine Biosynthesis
fig|6666666.229910.peg.1662 CDS CP007502.1 1657668 1658615 3 + 948 Cysteine synthase (EC 2.5.1.47) Cysteine Biosynthesis;
Methionine Biosynthesis
fig|6666666.229910.peg.1663 CDS CP007502.1 1658693 1658580 -2 - 114 hypothetical protein - none -
fig|6666666.229910.peg.1664 CDS CP007502.1 1658981 1658835 -2 - 147 hypothetical protein - none -
fig|6666666.229910.peg.1665 CDS CP007502.1 1659638 1659057 -2 - 582 Hypothetical protein VC0266 (sugar utilization related?) VC0266
fig|6666666.229910.peg.1666 CDS CP007502.1 1661038 1659947 -1 - 1092 GTP-binding and nucleic acid-binding protein YchF Universal GTPases
fig|6666666.229910.peg.1667 CDS CP007502.1 1661910 1661227 -3 - 684 Peptidyl-tRNA hydrolase (EC 3.1.1.29) Cell division-ribosomal stress proteins cluster;
Sporulation-associated proteins with broader functions;
Transcription repair cluster;
Translation termination factors bacterial
fig|6666666.229910.peg.1668 CDS CP007502.1 1662204 1662731 3 + 528 Mobile element protein - none -
fig|6666666.229910.peg.1669 CDS CP007502.1 1670312 1669239 -2 - 1074 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) - none -
fig|6666666.229910.peg.1670 CDS CP007502.1 1670441 1671724 2 + 1284 Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8) CBSS-196164.1.peg.461;
Heme and Siroheme Biosynthesis
fig|6666666.229910.peg.1671 CDS CP007502.1 1674391 1671800 -1 - 2592 [Protein-PII] uridylyltransferase (EC 2.7.7.59) Ammonia assimilation;
CBSS-312309.3.peg.1965
fig|6666666.229910.peg.1672 CDS CP007502.1 1675257 1674457 -3 - 801 Methionine aminopeptidase (EC 3.4.11.18) CBSS-312309.3.peg.1965;
Translation termination factors bacterial
fig|6666666.229910.peg.1673 CDS CP007502.1 1675391 1675732 2 + 342 probable iron binding protein from the HesB_IscA_SufA family - none -
fig|6666666.229910.peg.1674 CDS CP007502.1 1675734 1675949 3 + 216 hypothetical protein - none -
fig|6666666.229910.peg.1675 CDS CP007502.1 1675995 1678388 3 + 2394 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) DNA uptake cluster;
Peptidoglycan Biosynthesis;
Type IV pilus
fig|6666666.229910.peg.1676 CDS CP007502.1 1678687 1680594 1 + 1908 High-affinity Fe2+/Pb2+ permease precursor Iron transport system including ABC transporter
fig|6666666.229910.peg.1677 CDS CP007502.1 1680637 1681158 1 + 522 Periplasmic protein p19 involved in high-affinity Fe2+ transport Iron transport system including ABC transporter
fig|6666666.229910.peg.1678 CDS CP007502.1 1681297 1682727 1 + 1431 Fe2+ ABC transporter, substrate binding protein Iron transport system including ABC transporter
fig|6666666.229910.peg.1679 CDS CP007502.1 1682730 1684055 3 + 1326 Cell division protein FtsX Bacterial Cell Division
fig|6666666.229910.peg.1680 CDS CP007502.1 1684066 1685181 1 + 1116 Fe2+ ABC transporter, permease protein 2 Iron transport system including ABC transporter
fig|6666666.229910.peg.1681 CDS CP007502.1 1685183 1685854 2 + 672 Fe2+ ABC transporter, ATP-binding subunit Iron transport system including ABC transporter
fig|6666666.229910.peg.1682 CDS CP007502.1 1685844 1686335 3 + 492 Possible periplasmic thiredoxin Iron transport system including ABC transporter
fig|6666666.229910.peg.1683 CDS CP007502.1 1686342 1686653 3 + 312 Cytochrome C553 (soluble cytochrome f) Iron transport system including ABC transporter;
Soluble cytochromes and functionally related electron carriers
fig|6666666.229910.peg.1684 CDS CP007502.1 1686742 1686864 1 + 123 hypothetical protein - none -
fig|6666666.229910.peg.1685 CDS CP007502.1 1686981 1687646 3 + 666 Phosphoglycolate phosphatase (EC 3.1.3.18) 2-phosphoglycolate salvage;
Glycolate, glyoxylate interconversions
fig|6666666.229910.peg.1686 CDS CP007502.1 1687810 1687652 -1 - 159 hypothetical protein - none -
fig|6666666.229910.peg.1687 CDS CP007502.1 1688284 1687838 -1 - 447 ISPg4, transposase - none -
fig|6666666.229910.peg.1688 CDS CP007502.1 1688986 1688294 -1 - 693 hypothetical protein - none -
fig|6666666.229910.peg.1689 CDS CP007502.1 1690394 1689084 -2 - 1311 putative inner membrane protein - none -
fig|6666666.229910.peg.1690 CDS CP007502.1 1694493 1690444 -3 - 4050 HrpA-like helicases - none -
fig|6666666.229910.peg.1691 CDS CP007502.1 1694879 1694490 -2 - 390 COG2363 - none -
fig|6666666.229910.peg.1692 CDS CP007502.1 1695482 1694880 -2 - 603 putative membrane protein - none -
fig|6666666.229910.peg.1693 CDS CP007502.1 1695786 1695457 -3 - 330 Glutaredoxin-related protein Glutaredoxins
fig|6666666.229910.peg.1694 CDS CP007502.1 1697168 1696128 -2 - 1041 Outer membrane protein A precursor Osmoregulation
fig|6666666.229910.peg.1695 CDS CP007502.1 1697653 1700706 1 + 3054 Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD Glycolate, glyoxylate interconversions
fig|6666666.229910.peg.1696 CDS CP007502.1 1700716 1701138 1 + 423 FIG017415: ydiI hotdog fold superfamily - none -
fig|6666666.229910.peg.1697 CDS CP007502.1 1701131 1702195 2 + 1065 Ferrochelatase, protoheme ferro-lyase (EC 4.99.1.1) Heme and Siroheme Biosynthesis
fig|6666666.229910.peg.1698 CDS CP007502.1 1702236 1702736 3 + 501 Thiol peroxidase, Tpx-type (EC 1.11.1.15) Thioredoxin-disulfide reductase
fig|6666666.229910.peg.1699 CDS CP007502.1 1704086 1702941 -2 - 1146 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism
fig|6666666.229910.peg.1700 CDS CP007502.1 1704945 1704142 -3 - 804 Glucosamine-6-phosphate deaminase (EC 3.5.99.6) Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism
fig|6666666.229910.peg.1701 CDS CP007502.1 1705978 1705100 -1 - 879 N-acetylneuraminate lyase (EC 4.1.3.3) Sialic Acid Metabolism
fig|6666666.229910.peg.1702 CDS CP007502.1 1706857 1705988 -1 - 870 Sialic acid utilization regulator, RpiR family Sialic Acid Metabolism
fig|6666666.229910.peg.1703 CDS CP007502.1 1707751 1706867 -1 - 885 N-acetylmannosamine kinase (EC 2.7.1.60) Sialic Acid Metabolism
fig|6666666.229910.peg.1704 CDS CP007502.1 1708469 1707768 -2 - 702 N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9) Sialic Acid Metabolism
fig|6666666.229910.peg.1705 CDS CP007502.1 1708711 1709697 1 + 987 TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein Sialic Acid Metabolism
fig|6666666.229910.peg.1706 CDS CP007502.1 1709761 1711611 1 + 1851 TRAP-type transport system, large permease component, predicted N-acetylneuraminate transporter / TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229910.peg.1707 CDS CP007502.1 1711750 1712880 1 + 1131 Sialic acid-induced transmembrane protein YjhT(NanM), possible mutarotase Sialic Acid Metabolism
fig|6666666.229910.peg.1708 CDS CP007502.1 1713129 1713434 3 + 306 PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69) Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism;
Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229910.peg.1709 CDS CP007502.1 1713459 1714595 3 + 1137 PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69) Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism;
Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229910.peg.1710 CDS CP007502.1 1716341 1715271 -2 - 1071 Outer membrane protein A precursor Osmoregulation
fig|6666666.229910.peg.1711 CDS CP007502.1 1718610 1716568 -3 - 2043 Excinuclease ABC subunit B DNA repair, UvrABC system
fig|6666666.229910.peg.1712 CDS CP007502.1 1720253 1719222 -2 - 1032 putative membrane protein - none -
fig|6666666.229910.peg.1713 CDS CP007502.1 1720933 1720268 -1 - 666 putative exported protein - none -
fig|6666666.229910.peg.1714 CDS CP007502.1 1721337 1722983 3 + 1647 ABC transporter ATP-binding protein - none -
fig|6666666.229910.peg.1715 CDS CP007502.1 1723974 1723087 -3 - 888 putative adhesin/invasin - none -
fig|6666666.229910.peg.1716 CDS CP007502.1 1724477 1726375 2 + 1899 Topoisomerase IV subunit B (EC 5.99.1.-) DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.229910.peg.1717 CDS CP007502.1 1726783 1726959 1 + 177 hypothetical protein - none -
fig|6666666.229910.peg.1718 CDS CP007502.1 1726967 1729222 2 + 2256 Topoisomerase IV subunit A (EC 5.99.1.-) DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.229910.peg.1719 CDS CP007502.1 1729506 1730117 3 + 612 Glutathione S-transferase (EC 2.5.1.18) Glutathione: Non-redox reactions
fig|6666666.229910.peg.1720 CDS CP007502.1 1730878 1730168 -1 - 711 hypothetical protein - none -
fig|6666666.229910.peg.1721 CDS CP007502.1 1731561 1730884 -3 - 678 FIG00904286: hypothetical protein - none -
fig|6666666.229910.peg.1722 CDS CP007502.1 1731702 1732055 3 + 354 Bona fide RidA/YjgF/TdcF/RutC subgroup - none -
fig|6666666.229910.peg.1723 CDS CP007502.1 1732867 1732097 -1 - 771 hypothetical protein - none -
fig|6666666.229910.peg.1724 CDS CP007502.1 1733648 1732962 -2 - 687 hypothetical protein - none -
fig|6666666.229910.peg.1725 CDS CP007502.1 1734604 1733651 -1 - 954 Glycosyltransferase - none -
fig|6666666.229910.peg.1726 CDS CP007502.1 1735638 1734748 -3 - 891 hypothetical protein - none -
fig|6666666.229910.peg.1727 CDS CP007502.1 1737686 1735641 -2 - 2046 DNA polymerase III subunits gamma and tau (EC 2.7.7.7) DNA processing cluster
fig|6666666.229910.peg.1728 CDS CP007502.1 1738330 1737719 -1 - 612 Adenine phosphoribosyltransferase (EC 2.4.2.7) Purine conversions;
cAMP signaling in bacteria
fig|6666666.229910.peg.1729 CDS CP007502.1 1739308 1738352 -1 - 957 Lipid A biosynthesis (KDO) 2-(lauroyl)-lipid IVA acyltransferase (EC 2.3.1.-) KDO2-Lipid A biosynthesis
fig|6666666.229910.peg.1730 CDS CP007502.1 1740191 1739424 -2 - 768 Putative membrane protein YfcA - none -
fig|6666666.229910.peg.1731 CDS CP007502.1 1741067 1740195 -2 - 873 Murein endopeptidase - none -
fig|6666666.229910.peg.1732 CDS CP007502.1 1742162 1741089 -2 - 1074 Chorismate synthase (EC 4.2.3.5) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229910.peg.1733 CDS CP007502.1 1745507 1742184 -2 - 3324 Potassium efflux system KefA protein / Small-conductance mechanosensitive channel Potassium homeostasis
fig|6666666.229910.peg.1734 CDS CP007502.1 1746931 1745516 -1 - 1416 O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229910.peg.1735 CDS CP007502.1 1747554 1746937 -3 - 618 SeqA protein, negative modulator of initiation of replication - none -
fig|6666666.229910.peg.1736 CDS CP007502.1 1747641 1748441 3 + 801 Esterase ybfF (EC 3.1.-.-) - none -
fig|6666666.229910.peg.1737 CDS CP007502.1 1748861 1749385 2 + 525 Flavodoxin 1 Flavodoxin
fig|6666666.229910.peg.1738 CDS CP007502.1 1749404 1749844 2 + 441 Ferric uptake regulation protein FUR Bacterial RNA-metabolizing Zn-dependent hydrolases;
Oxidative stress
fig|6666666.229910.peg.1739 CDS CP007502.1 1750012 1752675 1 + 2664 DNA gyrase subunit A (EC 5.99.1.3) Cell Division Subsystem including YidCD;
DNA gyrase subunits;
DNA replication cluster 1;
DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.229910.peg.1740 CDS CP007502.1 1752743 1753093 2 + 351 FIG00782386: hypothetical protein - none -
fig|6666666.229910.peg.1741 CDS CP007502.1 1753429 1753127 -1 - 303 Translation initiation factor SUI1-related protein Translation initiation factors bacterial
fig|6666666.229910.peg.1742 CDS CP007502.1 1754142 1753450 -3 - 693 Orotidine 5@1-phosphate decarboxylase (EC 4.1.1.23) De Novo Pyrimidine Synthesis;
Riboflavin synthesis cluster
fig|6666666.229910.peg.1743 CDS CP007502.1 1755362 1754172 -2 - 1191 Heat shock (predicted periplasmic) protein YciM, precursor Osmotic stress cluster
fig|6666666.229910.peg.1744 CDS CP007502.1 1755658 1755362 -1 - 297 Inner membrane protein yciS - none -
fig|6666666.229910.peg.1745 CDS CP007502.1 1756044 1755757 -3 - 288 Integration host factor beta subunit DNA structural proteins, bacterial
fig|6666666.229910.peg.1746 CDS CP007502.1 1757752 1756106 -1 - 1647 SSU ribosomal protein S1p Cell division-ribosomal stress proteins cluster
fig|6666666.229910.peg.1747 CDS CP007502.1 1758527 1757850 -2 - 678 Cytidylate kinase (EC 2.7.4.25) pyrimidine conversions
fig|6666666.229910.peg.1748 CDS CP007502.1 1759413 1758520 -3 - 894 Membrane protein LAPB - none -
fig|6666666.229910.peg.1749 CDS CP007502.1 1759706 1762072 2 + 2367 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229910.peg.1750 CDS CP007502.1 1762150 1764045 1 + 1896 Probable zinc protease pqqL (EC 3.4.99.-) - none -
fig|6666666.229910.peg.1751 CDS CP007502.1 1764052 1764924 1 + 873 Probable zinc protease pqqL (EC 3.4.99.-) - none -
fig|6666666.229910.peg.1752 CDS CP007502.1 1765323 1764991 -3 - 333 Branched-chain amino acid transport protein azlD - none -
fig|6666666.229910.peg.1753 CDS CP007502.1 1766052 1765324 -3 - 729 Branched-chain amino acid transport protein AzlC - none -
fig|6666666.229910.peg.1754 CDS CP007502.1 1766989 1766057 -1 - 933 Transcriptional activator MetR LysR-family proteins in Escherichia coli;
LysR-family proteins in Salmonella enterica Typhimurium;
Methionine Biosynthesis
fig|6666666.229910.peg.1755 CDS CP007502.1 1767289 1769562 1 + 2274 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) Methionine Biosynthesis
fig|6666666.229910.peg.1756 CDS CP007502.1 1772704 1769993 -1 - 2712 Type III restriction-modification enzyme helicase subunit - none -
fig|6666666.229910.peg.1757 CDS CP007502.1 1773494 1772838 -2 - 657 Type III restriction-modification system methylation subunit (EC 2.1.1.72) Restriction-Modification System
fig|6666666.229910.peg.1758 CDS CP007502.1 1773858 1773454 -3 - 405 Type III restriction-modification system methylation subunit (EC 2.1.1.72) Restriction-Modification System
fig|6666666.229910.peg.1759 CDS CP007502.1 1774281 1774102 -3 - 180 CRISPR-associated helicase Cas3 CRISPRs
fig|6666666.229910.peg.1760 CDS CP007502.1 1774835 1775497 2 + 663 Putative TEGT family carrier/transport protein CBSS-326442.4.peg.1852
fig|6666666.229910.peg.1761 CDS CP007502.1 1775583 1775912 3 + 330 tRNA 2-thiouridine synthesizing protein E (EC 2.8.1.-) CBSS-326442.4.peg.1852;
Lipoic acid synthesis cluster;
Sulfite reduction-associated complex DsrMKJOP and co-clustering genes
fig|6666666.229910.peg.1762 CDS CP007502.1 1776010 1776891 1 + 882 Manganese ABC transporter, periplasmic-binding protein SitA - none -
fig|6666666.229910.peg.1763 CDS CP007502.1 1776891 1777781 3 + 891 Manganese ABC transporter, ATP-binding protein SitB - none -
fig|6666666.229910.peg.1764 CDS CP007502.1 1777781 1778638 2 + 858 Manganese ABC transporter, inner membrane permease protein SitC - none -
fig|6666666.229910.peg.1765 CDS CP007502.1 1778635 1779483 1 + 849 Manganese ABC transporter, inner membrane permease protein SitD - none -
fig|6666666.229910.peg.1766 CDS CP007502.1 1779730 1779458 -1 - 273 Acylphosphate phosphohydrolase (EC 3.6.1.7), putative Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229910.peg.1767 CDS CP007502.1 1779875 1780549 2 + 675 UPF0319 protein YccT precursor CBSS-83333.1.peg.946
fig|6666666.229910.peg.1768 CDS CP007502.1 1780612 1781070 1 + 459 Methylglyoxal synthase (EC 4.2.3.3) CBSS-83333.1.peg.946;
Methylglyoxal Metabolism
fig|6666666.229910.peg.1769 CDS CP007502.1 1781070 1781543 3 + 474 Inner membrane protein YccF CBSS-83333.1.peg.946
fig|6666666.229910.peg.1770 CDS CP007502.1 1781552 1783693 2 + 2142 Putative efflux (PET) family inner membrane protein YccS CBSS-83333.1.peg.946
fig|6666666.229910.peg.1771 CDS CP007502.1 1784196 1783690 -3 - 507 FIG001674: hypothetical protein - none -
fig|6666666.229910.peg.1772 CDS CP007502.1 1784259 1785209 3 + 951 Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p YrdC-YciO-Sua5 protein family
fig|6666666.229910.peg.1773 CDS CP007502.1 1786320 1785376 -3 - 945 Transketolase, C-terminal section (EC 2.2.1.1) Pentose phosphate pathway
fig|6666666.229910.peg.1774 CDS CP007502.1 1786843 1786310 -1 - 534 Transketolase, N-terminal section (EC 2.2.1.1) Pentose phosphate pathway
fig|6666666.229910.peg.1775 CDS CP007502.1 1788353 1787145 -2 - 1209 FIG00732228: membrane protein - none -
fig|6666666.229910.peg.1776 CDS CP007502.1 1788499 1788362 -1 - 138 FIG00732228: membrane protein - none -
fig|6666666.229910.peg.1777 CDS CP007502.1 1788785 1788516 -2 - 270 Putative sugar phosphotransferase component II B - none -
fig|6666666.229910.peg.1778 CDS CP007502.1 1790285 1789287 -2 - 999 FIG00781545: hypothetical protein - none -
fig|6666666.229910.peg.1779 CDS CP007502.1 1792489 1790546 -1 - 1944 ABC transporter ATP-binding protein - none -
fig|6666666.229910.peg.1780 CDS CP007502.1 1793884 1792532 -1 - 1353 Putative dNTP triphosphohydrolase, associated with nucleotidase YfbR Purine conversions;
dNTP triphosphohydrolase protein family
fig|6666666.229910.peg.1781 CDS CP007502.1 1794578 1793886 -2 - 693 LrgA-associated membrane protein LrgB Murein hydrolase regulation and cell death
fig|6666666.229910.peg.1782 CDS CP007502.1 1794937 1794578 -1 - 360 Antiholin-like protein LrgA Murein hydrolase regulation and cell death
fig|6666666.229910.peg.1783 CDS CP007502.1 1795407 1795907 3 + 501 Micrococcal nuclease (thermonuclease) homologs - none -
fig|6666666.229910.peg.1784 CDS CP007502.1 1795913 1797109 2 + 1197 Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA Alanine biosynthesis;
mnm5U34 biosynthesis bacteria;
tRNA modification Archaea
fig|6666666.229910.peg.1785 CDS CP007502.1 1797106 1797486 1 + 381 Cysteine desulfurase CsdA-CsdE, sulfur acceptor protein CsdE - none -
fig|6666666.229910.peg.1786 CDS CP007502.1 1798960 1797530 -1 - 1431 ADP-heptose synthase (EC 2.7.-.-) / D-glycero-beta-D-manno-heptose 7-phosphate kinase LOS core oligosaccharide biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.229910.peg.1787 CDS CP007502.1 1799074 1800009 1 + 936 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) KDO2-Lipid A biosynthesis
fig|6666666.229910.peg.1788 CDS CP007502.1 1800630 1800067 -3 - 564 Putative oxidoreductase component of anaerobic dehydrogenases; Functional role page for Chaperone protein TorD - none -
fig|6666666.229910.peg.1789 CDS CP007502.1 1801241 1800630 -2 - 612 NAD(P)H oxidoreductase YRKL (EC 1.6.99.-) @ Putative NADPH-quinone reductase (modulator of drug activity B) @ Flavodoxin 2 Flavodoxin;
Flavodoxin
fig|6666666.229910.peg.1790 CDS CP007502.1 1801696 1801250 -1 - 447 Putative activity regulator of membrane protease YbbK - none -
fig|6666666.229910.peg.1791 CDS CP007502.1 1802646 1801720 -3 - 927 Putative stomatin/prohibitin-family membrane protease subunit YbbK - none -
fig|6666666.229910.peg.1792 CDS CP007502.1 1803989 1803168 -2 - 822 probable glucanotransferase (endo alpha-1,4 polygalactosaminidase related protein) - none -
fig|6666666.229910.peg.1793 CDS CP007502.1 1805791 1807173 1 + 1383 Cytochrome c551 peroxidase (EC 1.11.1.5) Protection from Reactive Oxygen Species
fig|6666666.229910.peg.1794 CDS CP007502.1 1808418 1807261 -3 - 1158 Ribonuclease D (EC 3.1.26.3) tRNA processing
fig|6666666.229910.peg.1795 CDS CP007502.1 1810177 1808501 -1 - 1677 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) Biotin biosynthesis;
Biotin synthesis cluster
fig|6666666.229910.peg.1796 CDS CP007502.1 1810777 1810220 -1 - 558 Starvation lipoprotein Slp paralog Carbon Starvation
fig|6666666.229910.peg.1797 CDS CP007502.1 1811531 1810809 -2 - 723 TsaB protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Ribosome biogenesis bacterial;
YgjD and YeaZ;
YjeE;
YrdC-YciO-Sua5 protein family
fig|6666666.229910.peg.1798 CDS CP007502.1 1813471 1811534 -1 - 1938 DinG family ATP-dependent helicase YoaA DNA repair, bacterial DinG and relatives
fig|6666666.229910.peg.1799 CDS CP007502.1 1813547 1814365 2 + 819 Aldose 1-epimerase - none -
fig|6666666.229910.peg.1800 CDS CP007502.1 1814775 1815632 3 + 858 FIG000875: Thioredoxin domain-containing protein EC-YbbN - none -
fig|6666666.229910.peg.1801 CDS CP007502.1 1815692 1816645 2 + 954 Thioredoxin reductase (EC 1.8.1.9) Thioredoxin-disulfide reductase;
pyrimidine conversions
fig|6666666.229910.peg.1802 CDS CP007502.1 1816751 1818514 2 + 1764 Transport ATP-binding protein CydD Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229910.peg.1803 CDS CP007502.1 1818514 1820247 1 + 1734 Transport ATP-binding protein CydC Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229910.peg.1804 CDS CP007502.1 1820511 1821377 3 + 867 Acyl-CoA thioesterase II (EC 3.1.2.-) Acyl-CoA thioesterase II
fig|6666666.229910.peg.1805 CDS CP007502.1 1821654 1821526 -3 - 129 hypothetical protein - none -
fig|6666666.229910.peg.1806 CDS CP007502.1 1822436 1821651 -2 - 786 serine/threonine protein kinase - none -
fig|6666666.229910.peg.1807 CDS CP007502.1 1823017 1822457 -1 - 561 unknown - none -
fig|6666666.229910.peg.1808 CDS CP007502.1 1823180 1823764 2 + 585 Putative lipoprotein yceB precursor - none -
fig|6666666.229910.peg.1809 CDS CP007502.1 1824735 1823821 -3 - 915 ROK family Glucokinase with ambiguous substrate specificity - none -
fig|6666666.229910.peg.1810 CDS CP007502.1 1825454 1824786 -2 - 669 Phosphatidylglycerophosphatase B (EC 3.1.3.27) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Osmotic stress cluster
fig|6666666.229910.peg.1811 CDS CP007502.1 1825603 1826256 1 + 654 GTP cyclohydrolase II (EC 3.5.4.25) Molybdenum cofactor biosynthesis;
Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster
fig|6666666.229910.peg.1812 CDS CP007502.1 1826535 1827275 3 + 741 FIG00698611: hypothetical protein - none -
fig|6666666.229910.peg.1813 CDS CP007502.1 1827940 1827437 -1 - 504 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229910.peg.1814 CDS CP007502.1 1828443 1827901 -3 - 543 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229910.peg.1815 CDS CP007502.1 1829262 1828468 -3 - 795 DNA for glycosyltransferase, lytic transglycosylase, dTDP-4-rhamnose reductase Rhamnose containing glycans
fig|6666666.229910.peg.1816 CDS CP007502.1 1830065 1829262 -2 - 804 Exodeoxyribonuclease III (EC 3.1.11.2) DNA repair, bacterial
fig|6666666.229910.peg.1817 CDS CP007502.1 1830334 1830209 -1 - 126 hypothetical protein - none -
fig|6666666.229910.peg.1818 CDS CP007502.1 1832024 1830606 -2 - 1419 Undecaprenyl-phosphate galactosephosphotransferase (EC 2.7.8.6) - none -
fig|6666666.229910.peg.1819 CDS CP007502.1 1832943 1831987 -3 - 957 O antigen biosynthesis rhamnosyltransferase rfbN (EC 2.4.1.-) - none -
fig|6666666.229910.peg.1820 CDS CP007502.1 1833822 1832953 -3 - 870 Alpha-L-Rha alpha-1,3-L-rhamnosyltransferase (EC 2.4.1.-) Rhamnose containing glycans
fig|6666666.229910.peg.1821 CDS CP007502.1 1834899 1834195 -3 - 705 Glycosyltransferase involved in cell wall biogenesis (EC 2.4.-.-) - none -
fig|6666666.229910.peg.1822 CDS CP007502.1 1836619 1835279 -1 - 1341 membrane protein, related to Actinobacillus protein (1944168) - none -
fig|6666666.229910.peg.1823 CDS CP007502.1 1837298 1836606 -2 - 693 NDP-hexose 4-ketoreductase UrdR - none -
fig|6666666.229910.peg.1824 CDS CP007502.1 1838526 1837270 -3 - 1257 DNA for glycosyltransferase, lytic transglycosylase, dTDP-4-rhamnose reductase Rhamnose containing glycans
fig|6666666.229910.peg.1825 CDS CP007502.1 1839497 1838526 -2 - 972 O antigen biosynthesis rhamnosyltransferase rfbN (EC 2.4.1.-) - none -
fig|6666666.229910.peg.1826 CDS CP007502.1 1840120 1839494 -1 - 627 Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40) Rhamnose containing glycans
fig|6666666.229910.peg.1827 CDS CP007502.1 1841025 1840234 -3 - 792 O-antigen export system permease protein RfbD - none -
fig|6666666.229910.peg.1828 CDS CP007502.1 1841598 1841059 -3 - 540 dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) Capsular heptose biosynthesis;
Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229910.peg.1829 CDS CP007502.1 1842479 1841601 -2 - 879 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229910.peg.1830 CDS CP007502.1 1843256 1842480 -2 - 777 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229910.peg.1831 CDS CP007502.1 1844497 1843430 -1 - 1068 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229910.peg.1832 CDS CP007502.1 1845697 1844567 -1 - 1131 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) Murein Hydrolases;
Peptidoglycan Biosynthesis
fig|6666666.229910.peg.1833 CDS CP007502.1 1846484 1845699 -2 - 786 Glucosyl-3-phosphoglycerate synthase (EC 2.4.1.266) - none -
fig|6666666.229910.peg.1834 CDS CP007502.1 1847458 1846577 -1 - 882 Glycosyltransferase - none -
fig|6666666.229910.peg.1835 CDS CP007502.1 1848651 1847458 -3 - 1194 DNA for glycosyltransferase, lytic transglycosylase, dTDP-4-rhamnose reductase Rhamnose containing glycans
fig|6666666.229910.peg.1836 CDS CP007502.1 1849436 1848660 -2 - 777 Lipopolysaccharide core biosynthesis glycosyltransferase WadA - none -
fig|6666666.229910.peg.1837 CDS CP007502.1 1849567 1851090 1 + 1524 putative flippase - none -
fig|6666666.229910.peg.1838 CDS CP007502.1 1851087 1852043 3 + 957 Polysaccharide polymerization protein - none -
fig|6666666.229910.peg.1839 CDS CP007502.1 1852152 1852403 3 + 252 YefM protein (antitoxin to YoeB) Toxin-antitoxin replicon stabilization systems
fig|6666666.229910.peg.1840 CDS CP007502.1 1852400 1852654 2 + 255 YoeB toxin protein Toxin-antitoxin replicon stabilization systems
fig|6666666.229910.peg.1841 CDS CP007502.1 1852667 1853410 2 + 744 Probable transmembrane protein - none -
fig|6666666.229910.peg.1842 CDS CP007502.1 1853587 1854414 1 + 828 DNA ligase (ATP) (EC 6.5.1.1) DNA ligases
fig|6666666.229910.peg.1843 CDS CP007502.1 1856721 1854547 -3 - 2175 ATP-dependent DNA helicase UvrD/PcrA DNA repair, bacterial UvrD and related helicases
fig|6666666.229910.peg.1844 CDS CP007502.1 1858244 1856895 -2 - 1350 Low-affinity gluconate/H+ symporter GntU D-gluconate and ketogluconates metabolism
fig|6666666.229910.peg.1845 CDS CP007502.1 1858462 1858980 1 + 519 Gluconokinase (EC 2.7.1.12) D-gluconate and ketogluconates metabolism;
Entner-Doudoroff Pathway
fig|6666666.229910.peg.1846 CDS CP007502.1 1859099 1858977 -2 - 123 hypothetical protein - none -
fig|6666666.229910.peg.1847 CDS CP007502.1 1860048 1859050 -3 - 999 Gluconate utilization system Gnt-I transcriptional repressor D-gluconate and ketogluconates metabolism
fig|6666666.229910.peg.1848 CDS CP007502.1 1860909 1860097 -3 - 813 Formate dehydrogenase chain D (EC 1.2.1.2) Formate hydrogenase
fig|6666666.229910.peg.1849 CDS CP007502.1 1861130 1864240 2 + 3111 Formate dehydrogenase N alpha subunit (EC 1.2.1.2) @ selenocysteine-containing Formate dehydrogenase;
Formate hydrogenase
fig|6666666.229910.peg.1850 CDS CP007502.1 1864338 1865168 3 + 831 Formate dehydrogenase O beta subunit (EC 1.2.1.2) Formate dehydrogenase;
Formate hydrogenase
fig|6666666.229910.peg.1851 CDS CP007502.1 1865161 1865586 1 + 426 Formate dehydrogenase -O, gamma subunit (EC 1.2.1.2) Anaerobic respiratory reductases;
Formate hydrogenase
fig|6666666.229910.peg.1852 CDS CP007502.1 1865689 1865874 1 + 186 Formate dehydrogenase -O, gamma subunit (EC 1.2.1.2) Anaerobic respiratory reductases;
Formate hydrogenase
fig|6666666.229910.peg.1853 CDS CP007502.1 1868726 1866441 -2 - 2286 [NiFe] hydrogenase metallocenter assembly protein HypF G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229910.peg.1854 CDS CP007502.1 1869022 1869621 1 + 600 Hydrogenase-4 component A - none -
fig|6666666.229910.peg.1855 CDS CP007502.1 1869654 1871675 3 + 2022 Hydrogenase-4 component B (EC 1.-.-.-) / Formate hydrogenlyase subunit 3 Formate hydrogenase;
Formate hydrogenase
fig|6666666.229910.peg.1856 CDS CP007502.1 1871686 1872648 1 + 963 Hydrogenase-4 component C - none -
fig|6666666.229910.peg.1857 CDS CP007502.1 1872661 1874106 1 + 1446 Hydrogenase-4 component D - none -
fig|6666666.229910.peg.1858 CDS CP007502.1 1874117 1874755 2 + 639 Hydrogenase-4 component E (EC 1.-.-.-) Formate hydrogenase
fig|6666666.229910.peg.1859 CDS CP007502.1 1874760 1876298 3 + 1539 Hydrogenase-4 component F - none -
fig|6666666.229910.peg.1860 CDS CP007502.1 1876317 1878047 3 + 1731 Formate hydrogenlyase subunit 5 Formate hydrogenase
fig|6666666.229910.peg.1861 CDS CP007502.1 1878061 1878708 1 + 648 Formate hydrogenlyase complex 3 iron-sulfur protein; Formate hydrogenlyase subunit 6; Ni,Fe-hydrogenase III medium subunit Formate hydrogenase
fig|6666666.229910.peg.1862 CDS CP007502.1 1878705 1879481 3 + 777 Formate hydrogenlyase subunit 7 Formate hydrogenase
fig|6666666.229910.peg.1863 CDS CP007502.1 1879616 1880020 2 + 405 Formate hydrogenlyase transcriptional activator Formate hydrogenase
fig|6666666.229910.peg.1864 CDS CP007502.1 1880010 1880471 3 + 462 Hydrogenase 3 maturation protease (EC 3.4.-.-) - none -
fig|6666666.229910.peg.1865 CDS CP007502.1 1881000 1883222 3 + 2223 Formate dehydrogenase H (EC 1.2.1.2) @ selenocysteine-containing Formate dehydrogenase
fig|6666666.229910.peg.1868 CDS CP007502.1 1884265 1883393 -1 - 873 Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) Serine-glyoxylate cycle;
TCA Cycle
fig|6666666.229910.peg.1869 CDS CP007502.1 1885445 1884276 -2 - 1170 Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) Serine-glyoxylate cycle;
TCA Cycle
fig|6666666.229910.peg.1870 CDS CP007502.1 1886855 1885632 -2 - 1224 Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61) Dehydrogenase complexes;
TCA Cycle
fig|6666666.229910.peg.1871 CDS CP007502.1 1886857 1886991 1 + 135 hypothetical protein - none -
fig|6666666.229910.peg.1872 CDS CP007502.1 1889787 1886980 -3 - 2808 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) Dehydrogenase complexes;
TCA Cycle
fig|6666666.229910.peg.1873 CDS CP007502.1 1889872 1889994 1 + 123 hypothetical protein - none -
fig|6666666.229910.peg.1874 CDS CP007502.1 1890701 1890063 -2 - 639 Hypothetical metal-binding enzyme, YcbL homolog CBSS-228400.4.peg.1623
fig|6666666.229910.peg.1875 CDS CP007502.1 1891339 1890779 -1 - 561 FIG001587: exported protein CBSS-228400.4.peg.1623
fig|6666666.229910.peg.1876 CDS CP007502.1 1892912 1891404 -2 - 1509 L,D-transpeptidase YcbB CBSS-228400.4.peg.1623
fig|6666666.229910.peg.1877 CDS CP007502.1 1895047 1892990 -1 - 2058 Tail-specific protease precursor (EC 3.4.21.102) - none -
fig|6666666.229910.peg.1878 CDS CP007502.1 1895729 1895121 -2 - 609 ProQ: influences osmotic activation of compatible solute ProP - none -
fig|6666666.229910.peg.1879 CDS CP007502.1 1895947 1897230 1 + 1284 Paraquat-inducible protein A Oxidative stress
fig|6666666.229910.peg.1880 CDS CP007502.1 1897193 1899850 2 + 2658 Paraquat-inducible protein B Oxidative stress
fig|6666666.229910.peg.1881 CDS CP007502.1 1901170 1899926 -1 - 1245 Tripeptide aminopeptidase (EC 3.4.11.4) - none -
fig|6666666.229910.peg.1882 CDS CP007502.1 1901434 1902552 1 + 1119 Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) Polyamine Metabolism
fig|6666666.229910.peg.1883 CDS CP007502.1 1902536 1903396 2 + 861 Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) Polyamine Metabolism
fig|6666666.229910.peg.1884 CDS CP007502.1 1903396 1904169 1 + 774 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) Polyamine Metabolism
fig|6666666.229910.peg.1885 CDS CP007502.1 1904300 1905397 2 + 1098 ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1) Polyamine Metabolism
fig|6666666.229910.peg.1886 CDS CP007502.1 1905519 1906415 3 + 897 Cytidine deaminase (EC 3.5.4.5) Murein hydrolase regulation and cell death;
pyrimidine conversions;
tRNA modification Bacteria
fig|6666666.229910.peg.1887 CDS CP007502.1 1906513 1906400 -1 - 114 hypothetical protein - none -
fig|6666666.229910.peg.1888 CDS CP007502.1 1907810 1906494 -2 - 1317 Seryl-tRNA synthetase (EC 6.1.1.11) CBSS-326442.4.peg.1852;
Glycine and Serine Utilization;
tRNA aminoacylation, Ser
fig|6666666.229910.peg.1889 CDS CP007502.1 1908118 1909785 1 + 1668 C4-dicarboxylate transporter DcuB - none -
fig|6666666.229910.peg.1890 CDS CP007502.1 1911622 1910282 -1 - 1341 FIG065221: Holliday junction DNA helicase CBSS-83333.1.peg.876
fig|6666666.229910.peg.1891 CDS CP007502.1 1912252 1911635 -1 - 618 Outer membrane lipoprotein carrier protein LolA CBSS-83333.1.peg.876;
Lipopolysaccharide assembly;
Lipoprotein sorting system
fig|6666666.229910.peg.1892 CDS CP007502.1 1915089 1912345 -3 - 2745 Cell division protein FtsK Bacterial Cell Division;
Bacterial Cytoskeleton;
Bacterial RNA-metabolizing Zn-dependent hydrolases;
CBSS-83333.1.peg.876
fig|6666666.229910.peg.1893 CDS CP007502.1 1915572 1915093 -3 - 480 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229910.peg.1894 CDS CP007502.1 1917484 1916111 -1 - 1374 DNA repair protein RadA DNA repair, bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229910.peg.1895 CDS CP007502.1 1918641 1917487 -3 - 1155 Adenylate cyclase (EC 4.6.1.1) cAMP signaling in bacteria
fig|6666666.229910.peg.1896 CDS CP007502.1 1918806 1919486 3 + 681 Phosphate transport regulator (distant homolog of PhoU) Phosphate metabolism
fig|6666666.229910.peg.1897 CDS CP007502.1 1919512 1920777 1 + 1266 Probable low-affinity inorganic phosphate transporter Phosphate metabolism
fig|6666666.229910.peg.1898 CDS CP007502.1 1920846 1921457 3 + 612 SH3 domain protein - none -
fig|6666666.229910.peg.1899 CDS CP007502.1 1921457 1922761 2 + 1305 tRNA nucleotidyltransferase (EC 2.7.7.21) (EC 2.7.7.25) Polyadenylation bacterial;
tRNA nucleotidyltransferase
fig|6666666.229910.peg.1900 CDS CP007502.1 1922796 1923419 3 + 624 Outer membrane lipoprotein LolB precursor - none -
fig|6666666.229910.peg.1901 CDS CP007502.1 1923419 1924330 2 + 912 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148) A Gammaproteobacteria Cluster Relating to Translation;
Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.229910.peg.1902 CDS CP007502.1 1924371 1925321 3 + 951 Ribose-phosphate pyrophosphokinase (EC 2.7.6.1) A Gammaproteobacteria Cluster Relating to Translation;
Pentose phosphate pathway;
Transcription repair cluster
fig|6666666.229910.peg.1903 CDS CP007502.1 1925499 1925645 3 + 147 hypothetical protein - none -
fig|6666666.229910.peg.1904 CDS CP007502.1 1925954 1927099 2 + 1146 L-lactate dehydrogenase (EC 1.1.2.3) Lactate utilization;
Respiratory dehydrogenases 1
fig|6666666.229910.peg.1905 CDS CP007502.1 1927342 1928931 1 + 1590 L-lactate permease Lactate utilization
fig|6666666.229910.peg.1906 CDS CP007502.1 1929418 1929086 -1 - 333 UPF0265 protein YeeX Broadly distributed proteins not in subsystems
fig|6666666.229910.peg.1907 CDS CP007502.1 1929617 1930699 2 + 1083 Phosphoserine aminotransferase (EC 2.6.1.52) Glycine and Serine Utilization;
Pyridoxin (Vitamin B6) Biosynthesis;
Serine Biosynthesis
fig|6666666.229910.peg.1908 CDS CP007502.1 1930726 1931871 1 + 1146 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) @ Histidinol-phosphate aminotransferase (EC 2.6.1.9) Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229910.peg.1909 CDS CP007502.1 1931882 1933213 2 + 1332 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229910.peg.1910 CDS CP007502.1 1933768 1933301 -1 - 468 Ribonuclease HI (EC 3.1.26.4) CBSS-228410.1.peg.134;
CBSS-342610.3.peg.1536;
Ribonuclease H
fig|6666666.229910.peg.1911 CDS CP007502.1 1933836 1934540 3 + 705 DNA polymerase III epsilon subunit (EC 2.7.7.7) CBSS-228410.1.peg.134;
CBSS-342610.3.peg.1536
fig|6666666.229910.peg.1912 CDS CP007502.1 1935993 1935850 -3 - 144 conserved hypothetical protein - none -
fig|6666666.229910.peg.1913 CDS CP007502.1 1936472 1936654 2 + 183 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) Ammonia assimilation;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229910.peg.1914 CDS CP007502.1 1936651 1936839 1 + 189 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) Ammonia assimilation;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229910.peg.1915 CDS CP007502.1 1937010 1938398 3 + 1389 Putative protease - none -
fig|6666666.229910.peg.1916 CDS CP007502.1 1938695 1939786 2 + 1092 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) CBSS-211586.1.peg.2832;
Queuosine-Archaeosine Biosynthesis;
Scaffold proteins for [4Fe-4S] cluster assembly (MRP family);
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229910.peg.1917 CDS CP007502.1 1940966 1939830 -2 - 1137 Periplasmic aromatic amino acid aminotransferase beta precursor (EC 2.6.1.57) Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229910.peg.1918 CDS CP007502.1 1941439 1942590 1 + 1152 tRNA-guanine transglycosylase (EC 2.4.2.29) CBSS-211586.1.peg.2832;
Queuosine-Archaeosine Biosynthesis;
Scaffold proteins for [4Fe-4S] cluster assembly (MRP family);
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229910.peg.1919 CDS CP007502.1 1942882 1943181 1 + 300 Preprotein translocase subunit YajC (TC 3.A.5.1.1) CBSS-211586.1.peg.2832
fig|6666666.229910.peg.1920 CDS CP007502.1 1943245 1945062 1 + 1818 Protein-export membrane protein SecD (TC 3.A.5.1.1) CBSS-211586.1.peg.2832
fig|6666666.229910.peg.1921 CDS CP007502.1 1945079 1946044 2 + 966 Protein-export membrane protein SecF (TC 3.A.5.1.1) CBSS-211586.1.peg.2832
fig|6666666.229910.peg.1922 CDS CP007502.1 1946264 1948891 2 + 2628 Iron siderophore receptor protein - none -
fig|6666666.229910.peg.1923 CDS CP007502.1 1949138 1948962 -2 - 177 hypothetical protein - none -
fig|6666666.229910.peg.1924 CDS CP007502.1 1949241 1951862 3 + 2622 Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) 5-FCL-like protein;
Butanol Biosynthesis;
Butanol Biosynthesis;
Fermentations: Lactate;
Fermentations: Mixed acid;
Fermentations: Mixed acid;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229910.peg.1925 CDS CP007502.1 1952898 1951945 -3 - 954 Inositol transport system permease protein Inositol catabolism
fig|6666666.229910.peg.1926 CDS CP007502.1 1954454 1952949 -2 - 1506 Inositol transport system ATP-binding protein Inositol catabolism
fig|6666666.229910.peg.1927 CDS CP007502.1 1955455 1954523 -1 - 933 Inositol transport system sugar-binding protein Inositol catabolism
fig|6666666.229910.peg.1928 CDS CP007502.1 1956477 1955539 -3 - 939 Inositol transport system sugar-binding protein Inositol catabolism
fig|6666666.229910.peg.1929 CDS CP007502.1 1957917 1956778 -3 - 1140 Myo-inositol 2-dehydrogenase 2 (EC 1.1.1.18) Inositol catabolism
fig|6666666.229910.peg.1930 CDS CP007502.1 1959516 1958008 -3 - 1509 Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27) Inositol catabolism
fig|6666666.229910.peg.1931 CDS CP007502.1 1961097 1959754 -3 - 1344 putative hexose phosphate transport protein - none -
fig|6666666.229910.peg.1932 CDS CP007502.1 1961918 1961115 -2 - 804 Inositol-1-monophosphatase (EC 3.1.3.25) - none -
fig|6666666.229910.peg.1933 CDS CP007502.1 1962182 1963012 2 + 831 5-deoxy-glucuronate isomerase (EC 5.3.1.-) Inositol catabolism
fig|6666666.229910.peg.1934 CDS CP007502.1 1963098 1962967 -3 - 132 hypothetical protein - none -
fig|6666666.229910.peg.1935 CDS CP007502.1 1963141 1963980 1 + 840 Predicted transcriptional regulator of the myo-inositol catabolic operon Inositol catabolism
fig|6666666.229910.peg.1936 CDS CP007502.1 1965927 1964020 -3 - 1908 5-keto-2-deoxygluconokinase (EC 2.7.1.92) / uncharacterized domain Inositol catabolism;
Inositol catabolism
fig|6666666.229910.peg.1937 CDS CP007502.1 1966175 1966047 -2 - 129 hypothetical protein - none -
fig|6666666.229910.peg.1938 CDS CP007502.1 1966239 1968185 3 + 1947 Epi-inositol hydrolase (EC 3.7.1.-) Inositol catabolism
fig|6666666.229910.peg.1939 CDS CP007502.1 1968240 1969136 3 + 897 Inosose dehydratase (EC 4.2.1.44) Inositol catabolism
fig|6666666.229910.peg.1940 CDS CP007502.1 1969139 1970149 2 + 1011 Myo-inositol 2-dehydrogenase 1 (EC 1.1.1.18) Inositol catabolism
fig|6666666.229910.peg.1941 CDS CP007502.1 1971852 1970419 -3 - 1434 RTX toxin transporter, determinant D - none -
fig|6666666.229910.peg.1942 CDS CP007502.1 1973990 1971867 -2 - 2124 RTX toxin transporter - none -
fig|6666666.229910.peg.1943 CDS CP007502.1 1977226 1974059 -1 - 3168 bifunctional hemolysin-adenylate cyclase precursor cAMP signaling in bacteria
fig|6666666.229910.peg.1944 CDS CP007502.1 1977745 1977239 -1 - 507 RTX toxin activating lysine-acyltransferase (EC 2.3.1.-) - none -
fig|6666666.229910.peg.1945 CDS CP007502.1 1979584 1978322 -1 - 1263 Serine hydroxymethyltransferase (EC 2.1.2.1) 5-FCL-like protein;
Glycine Biosynthesis;
Glycine and Serine Utilization;
Serine-glyoxylate cycle;
Serine Biosynthesis;
YrdC-YciO-Sua5 protein family
fig|6666666.229910.peg.1946 CDS CP007502.1 1980261 1979719 -3 - 543 hypothetical protein - none -
fig|6666666.229910.peg.1947 CDS CP007502.1 1980637 1980485 -1 - 153 hypothetical protein - none -
fig|6666666.229910.peg.1948 CDS CP007502.1 1980789 1980640 -3 - 150 hypothetical protein - none -
fig|6666666.229910.peg.1949 CDS CP007502.1 1981880 1980876 -2 - 1005 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) RNA methylation
fig|6666666.229910.peg.1950 CDS CP007502.1 1981936 1982385 1 + 450 DNA polymerase III psi subunit (EC 2.7.7.7) - none -
fig|6666666.229910.peg.1951 CDS CP007502.1 1982395 1982838 1 + 444 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Ribosome biogenesis bacterial;
YrdC-YciO-Sua5 protein family
fig|6666666.229910.peg.1952 CDS CP007502.1 1986256 1982840 -1 - 3417 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) DNA repair, bacterial RecBCD pathway
fig|6666666.229910.peg.1953 CDS CP007502.1 1986459 1986268 -3 - 192 FIG00696353: hypothetical protein - none -
fig|6666666.229910.peg.1954 CDS CP007502.1 1987144 1986473 -1 - 672 Type II secretory pathway, component PulJ - none -
fig|6666666.229910.peg.1955 CDS CP007502.1 1987775 1987158 -2 - 618 Type II secretory pathway, pseudopilin PulG - none -
fig|6666666.229910.peg.1956 CDS CP007502.1 1988851 1988384 -1 - 468 18K peptidoglycan-associated outer membrane lipoprotein; Peptidoglycan-associated lipoprotein precursor; Outer membrane protein P6; OmpA/MotB precursor Ton and Tol transport systems
fig|6666666.229910.peg.1957 CDS CP007502.1 1990146 1988866 -3 - 1281 tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins Ton and Tol transport systems
fig|6666666.229910.peg.1958 CDS CP007502.1 1991389 1990181 -1 - 1209 TolA protein Ton and Tol transport systems
fig|6666666.229910.peg.1959 CDS CP007502.1 1991828 1991406 -2 - 423 Tol biopolymer transport system, TolR protein Ton and Tol transport systems
fig|6666666.229910.peg.1960 CDS CP007502.1 1992603 1991914 -3 - 690 MotA/TolQ/ExbB proton channel family protein Ton and Tol transport systems
fig|6666666.229910.peg.1961 CDS CP007502.1 1993037 1992633 -2 - 405 4-hydroxybenzoyl-CoA thioesterase family active site Ton and Tol transport systems
fig|6666666.229910.peg.1962 CDS CP007502.1 1993102 1993221 1 + 120 hypothetical protein - none -
fig|6666666.229910.peg.1963 CDS CP007502.1 1994682 1993546 -3 - 1137 Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229910.peg.1964 CDS CP007502.1 1996166 1994697 -2 - 1470 Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229910.peg.1965 CDS CP007502.1 1996714 1997025 1 + 312 Chromosome segregation ATPases - none -
fig|6666666.229910.peg.1966 CDS CP007502.1 1998098 1997079 -2 - 1020 Holliday junction DNA helicase RuvB RuvABC plus a hypothetical
fig|6666666.229910.peg.1967 CDS CP007502.1 1998721 1998107 -1 - 615 Holliday junction DNA helicase RuvA RuvABC plus a hypothetical
fig|6666666.229910.peg.1968 CDS CP007502.1 1999357 1998785 -1 - 573 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) RuvABC plus a hypothetical
fig|6666666.229910.peg.1969 CDS CP007502.1 1999823 1999413 -2 - 411 excinuclease ABC subunit A - none -
fig|6666666.229910.peg.1970 CDS CP007502.1 2000575 1999835 -1 - 741 FIG000859: hypothetical protein YebC Riboflavin, FMN and FAD metabolism in plants;
RuvABC plus a hypothetical
fig|6666666.229910.peg.1971 CDS CP007502.1 2000980 2000609 -1 - 372 Dihydroneopterin triphosphate pyrophosphohydrolase type 2 (nudB) Folate Biosynthesis
fig|6666666.229910.peg.1972 CDS CP007502.1 2002429 2001161 -1 - 1269 Mn2+ and Fe2+ transporters of the NRAMP family - none -
fig|6666666.229910.peg.1973 CDS CP007502.1 2002647 2002787 3 + 141 hypothetical protein - none -
fig|6666666.229910.peg.1974 CDS CP007502.1 2004599 2002821 -2 - 1779 Aspartyl-tRNA synthetase (EC 6.1.1.12) tRNA aminoacylation, Asp and Asn
fig|6666666.229910.peg.1975 CDS CP007502.1 2004807 2005334 3 + 528 membrane protein, putative - none -
fig|6666666.229910.peg.1976 CDS CP007502.1 2005406 2006131 2 + 726 tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229910.peg.1977 CDS CP007502.1 2007815 2006211 -2 - 1605 FIG00362583: hypothetical protein - none -
fig|6666666.229910.peg.1978 CDS CP007502.1 2008778 2007858 -2 - 921 FIG00362583: hypothetical protein - none -
fig|6666666.229910.peg.1979 CDS CP007502.1 2010252 2008921 -3 - 1332 Glycerol-3-phosphate transporter - none -
fig|6666666.229910.peg.1980 CDS CP007502.1 2010653 2012605 2 + 1953 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229910.peg.1981 CDS CP007502.1 2012764 2013171 1 + 408 Lactoylglutathione lyase (EC 4.4.1.5) Glutathione: Non-redox reactions;
Methylglyoxal Metabolism
fig|6666666.229910.peg.1982 CDS CP007502.1 2013258 2013911 3 + 654 Ribonuclease T (EC 3.1.13.-) tRNA processing
fig|6666666.229910.peg.1983 CDS CP007502.1 2014263 2015615 3 + 1353 Histidine permease YuiF - none -
fig|6666666.229910.peg.1984 CDS CP007502.1 2015679 2016245 3 + 567 Primosomal replication protein N@1@1 - none -
fig|6666666.229910.peg.1985 CDS CP007502.1 2017726 2016302 -1 - 1425 tRNA-i(6)A37 methylthiotransferase Methylthiotransferases;
tRNA-methylthiotransferase containing cluster;
tRNA modification Archaea;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229910.peg.1986 CDS CP007502.1 2017834 2017962 1 + 129 hypothetical protein - none -
fig|6666666.229910.peg.1987 CDS CP007502.1 2018070 2018213 3 + 144 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-) CBSS-87626.3.peg.3639;
Ubiquinone Biosynthesis
fig|6666666.229910.peg.1988 CDS CP007502.1 2019658 2018927 -1 - 732 FIG053235: Diacylglucosamine hydrolase like Llipid A biosynthesis cluster
fig|6666666.229910.peg.1989 CDS CP007502.1 2020649 2019660 -2 - 990 Octaprenyl diphosphate synthase (EC 2.5.1.90) Isoprenoinds for Quinones;
Polyprenyl Diphosphate Biosynthesis
fig|6666666.229910.peg.1990 CDS CP007502.1 2020897 2021208 1 + 312 LSU ribosomal protein L21p CBSS-176279.3.peg.868
fig|6666666.229910.peg.1991 CDS CP007502.1 2021229 2021486 3 + 258 LSU ribosomal protein L27p CBSS-176279.3.peg.868
fig|6666666.229910.peg.1992 CDS CP007502.1 2021558 2022490 2 + 933 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229910.peg.1993 CDS CP007502.1 2022568 2023485 1 + 918 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229910.peg.1994 CDS CP007502.1 2023522 2024697 1 + 1176 GTP-binding protein Obg CBSS-176279.3.peg.868;
Universal GTPases
fig|6666666.229910.peg.1995 CDS CP007502.1 2024813 2024694 -2 - 120 tmRNA-binding protein SmpB Heat shock dnaK gene cluster extended;
Translation termination factors bacterial
fig|6666666.229910.peg.1996 CDS CP007502.1 2025247 2024765 -1 - 483 tmRNA-binding protein SmpB Heat shock dnaK gene cluster extended;
Translation termination factors bacterial
fig|6666666.229910.peg.1997 CDS CP007502.1 2025592 2025455 -1 - 138 hypothetical protein - none -
fig|6666666.229910.peg.1998 CDS CP007502.1 2025615 2026433 3 + 819 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229910.peg.1999 CDS CP007502.1 2026542 2027240 3 + 699 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229910.peg.2000 CDS CP007502.1 2027341 2027607 1 + 267 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229910.peg.2001 CDS CP007502.1 2027738 2028265 2 + 528 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229910.peg.2002 CDS CP007502.1 2028275 2029213 2 + 939 Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229910.peg.2003 CDS CP007502.1 2029223 2030206 2 + 984 Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229910.peg.2004 CDS CP007502.1 2030203 2031201 1 + 999 Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229910.peg.2005 CDS CP007502.1 2032015 2031308 -1 - 708 Aerobic respiration control protein arcA - none -
fig|6666666.229910.peg.2006 CDS CP007502.1 2032417 2032277 -1 - 141 LSU ribosomal protein L36p - none -
fig|6666666.229910.peg.2007 CDS CP007502.1 2032693 2032427 -1 - 267 LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-independent - none -
fig|6666666.229910.peg.2008 CDS CP007502.1 2033474 2032905 -2 - 570 Lysine decarboxylase family - none -
fig|6666666.229910.peg.2009 CDS CP007502.1 2033617 2035407 1 + 1791 Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8) Biogenesis of c-type cytochromes;
Periplasmic disulfide interchange
fig|6666666.229910.peg.2010 CDS CP007502.1 2035509 2035396 -3 - 114 hypothetical protein - none -
fig|6666666.229910.peg.2011 CDS CP007502.1 2035487 2035876 2 + 390 INTEGRAL MEMBRANE PROTEIN (Rhomboid family) - none -
fig|6666666.229910.peg.2012 CDS CP007502.1 2039156 2036274 -2 - 2883 Ribonuclease E (EC 3.1.26.12) RNA processing and degradation, bacterial;
Ribosome biogenesis bacterial
fig|6666666.229910.peg.2013 CDS CP007502.1 2039572 2039432 -1 - 141 hypothetical protein - none -
fig|6666666.229910.peg.2014 CDS CP007502.1 2039631 2040590 3 + 960 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) RNA pseudouridine syntheses;
Ribosome biogenesis bacterial
fig|6666666.229910.peg.2015 CDS CP007502.1 2041004 2040789 -2 - 216 Thioredoxin - none -
fig|6666666.229910.peg.2016 CDS CP007502.1 2042207 2041212 -2 - 996 D-lactate dehydrogenase (EC 1.1.1.28) Fermentations: Lactate;
Fermentations: Mixed acid
fig|6666666.229910.peg.2017 CDS CP007502.1 2043361 2042231 -1 - 1131 Cystathionine gamma-synthase (EC 2.5.1.48) Methionine Biosynthesis
fig|6666666.229910.peg.2018 CDS CP007502.1 2044342 2045364 1 + 1023 ATPase provides energy for both assembly of type IV secretion complex and secretion of T-DNA complex (VirB4) - none -
fig|6666666.229910.peg.2019 CDS CP007502.1 2045534 2045812 2 + 279 hypothetical protein - none -
fig|6666666.229910.peg.2020 CDS CP007502.1 2047507 2046362 -1 - 1146 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) Proline Synthesis
fig|6666666.229910.peg.2021 CDS CP007502.1 2048289 2047630 -3 - 660 putative membrane protein - none -
fig|6666666.229910.peg.2022 CDS CP007502.1 2048486 2048370 -2 - 117 hypothetical protein - none -
fig|6666666.229910.peg.2023 CDS CP007502.1 2048501 2049307 2 + 807 Permeases of the drug/metabolite transporter (DMT) superfamily - none -
fig|6666666.229910.peg.2024 CDS CP007502.1 2050578 2049571 -3 - 1008 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) Cluster Ytf and putative sugar transporter;
Glycolysis and Gluconeogenesis;
Putative sugar ABC transporter (ytf cluster)
fig|6666666.229910.peg.2025 CDS CP007502.1 2050736 2052109 2 + 1374 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (EC 6.3.2.-) Peptidoglycan biosynthesis--gjo;
Recycling of Peptidoglycan Amino Acids
fig|6666666.229910.peg.2026 CDS CP007502.1 2052489 2053607 3 + 1119 Membrane-bound lytic murein transglycosylase A precursor (EC 3.2.1.-) Murein Hydrolases
fig|6666666.229910.peg.2027 CDS CP007502.1 2053607 2054377 2 + 771 HesA/MoeB/ThiF family protein related to EC-YgdL - none -
fig|6666666.229910.peg.2028 CDS CP007502.1 2054477 2055496 2 + 1020 Zinc ABC transporter, periplasmic-binding protein ZnuA - none -
fig|6666666.229910.peg.2029 CDS CP007502.1 2055624 2056436 3 + 813 Outer membrane lipoprotein e (P4) / NMN 5@1-nucleotidase, extracellular (EC 3.1.3.5) NAD and NADP cofactor biosynthesis global
fig|6666666.229910.peg.2030 CDS CP007502.1 2057007 2056516 -3 - 492 FIG001943: hypothetical protein YajQ Broadly distributed proteins not in subsystems
fig|6666666.229910.peg.2031 CDS CP007502.1 2057962 2057018 -1 - 945 Phosphoserine phosphatase (EC 3.1.3.3) Glycine and Serine Utilization;
Serine Biosynthesis;
Serine Biosynthesis
fig|6666666.229910.peg.2032 CDS CP007502.1 2058038 2058715 2 + 678 Lipoate-protein ligase A Lipoic acid metabolism
fig|6666666.229910.peg.2033 CDS CP007502.1 2058791 2058672 -2 - 120 hypothetical protein - none -
fig|6666666.229910.peg.2034 CDS CP007502.1 2059088 2058825 -2 - 264 SSU ribosomal protein S20p - none -
fig|6666666.229910.peg.2035 CDS CP007502.1 2059356 2060933 3 + 1578 Proposed peptidoglycan lipid II flippase MurJ Peptidoglycan lipid II flippase
fig|6666666.229910.peg.2036 CDS CP007502.1 2061011 2061937 2 + 927 Riboflavin kinase (EC 2.7.1.26) / FMN adenylyltransferase (EC 2.7.7.2) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin, FMN and FAD metabolism in plants;
riboflavin to FAD;
riboflavin to FAD
fig|6666666.229910.peg.2037 CDS CP007502.1 2062152 2062316 3 + 165 FIG01055344: hypothetical protein - none -
fig|6666666.229910.peg.2038 CDS CP007502.1 2062354 2065176 1 + 2823 Isoleucyl-tRNA synthetase (EC 6.1.1.5) tRNA aminoacylation, Ile
fig|6666666.229910.peg.2039 CDS CP007502.1 2065256 2065750 2 + 495 Lipoprotein signal peptidase (EC 3.4.23.36) Lipoprotein Biosynthesis;
Signal peptidase
fig|6666666.229910.peg.2040 CDS CP007502.1 2065750 2066694 1 + 945 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.229910.peg.2041 CDS CP007502.1 2068457 2067159 -2 - 1299 Cell division trigger factor (EC 5.2.1.8) Bacterial Cell Division
fig|6666666.229910.peg.2042 CDS CP007502.1 2069514 2068621 -3 - 894 Tyrosine recombinase XerD - none -
fig|6666666.229910.peg.2043 CDS CP007502.1 2070677 2069517 -2 - 1161 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) A Hypothetical Protein Related to Proline Metabolism;
CBSS-630.2.peg.3360;
Proline Synthesis
fig|6666666.229910.peg.2044 CDS CP007502.1 2070916 2070677 -1 - 240 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) A Hypothetical Protein Related to Proline Metabolism;
CBSS-630.2.peg.3360;
Proline Synthesis
fig|6666666.229910.peg.2045 CDS CP007502.1 2071380 2070922 -3 - 459 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) A Hypothetical Protein Related to Proline Metabolism;
CBSS-630.2.peg.3360;
Proline Synthesis
fig|6666666.229910.peg.2046 CDS CP007502.1 2071443 2072348 3 + 906 DNA recombination-dependent growth factor C DNA repair, bacterial
fig|6666666.229910.peg.2047 CDS CP007502.1 2072762 2072439 -2 - 324 opacity associated protein - none -
fig|6666666.229910.peg.2048 CDS CP007502.1 2074188 2072875 -3 - 1314 Cell envelope opacity-associated protein A - none -
fig|6666666.229910.peg.2049 CDS CP007502.1 2075391 2074360 -3 - 1032 Lysyl-lysine 2,3-aminomutase Translation elongation factor P lysylation
fig|6666666.229910.peg.2050 CDS CP007502.1 2075456 2075977 2 + 522 Translation elongation factor P Translation elongation factor P lysylation;
Translation elongation factors bacterial
fig|6666666.229910.peg.2051 CDS CP007502.1 2076307 2076480 1 + 174 Tryptophanase (EC 4.1.99.1) - none -
fig|6666666.229910.peg.2052 CDS CP007502.1 2076609 2077454 3 + 846 Tryptophanase (EC 4.1.99.1) - none -
fig|6666666.229910.peg.2053 CDS CP007502.1 2077521 2077685 3 + 165 Tryptophanase (EC 4.1.99.1) - none -
fig|6666666.229910.peg.2054 CDS CP007502.1 2077847 2079061 2 + 1215 Tyrosine-specific transport protein - none -
fig|6666666.229910.peg.2055 CDS CP007502.1 2079804 2079127 -3 - 678 YheO-like PAS domain - none -
fig|6666666.229910.peg.2056 CDS CP007502.1 2080373 2079867 -2 - 507 Arabinose efflux permease - none -
fig|6666666.229910.peg.2057 CDS CP007502.1 2081097 2080366 -3 - 732 UDP-2,3-diacylglucosamine diphosphatase (EC 3.6.1.54) KDO2-Lipid A biosynthesis;
Llipid A biosynthesis cluster
fig|6666666.229910.peg.2058 CDS CP007502.1 2081208 2081951 3 + 744 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229910.peg.2059 CDS CP007502.1 2081953 2083371 1 + 1419 Putative cell division protein precursor - none -
fig|6666666.229910.peg.2060 CDS CP007502.1 2084305 2083442 -1 - 864 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229910.peg.2061 CDS CP007502.1 2085187 2084447 -1 - 741 Pyruvate formate-lyase activating enzyme (EC 1.97.1.4) Fermentations: Mixed acid
fig|6666666.229910.peg.2062 CDS CP007502.1 2087644 2085332 -1 - 2313 Pyruvate formate-lyase (EC 2.3.1.54) Butanol Biosynthesis;
Fermentations: Mixed acid
fig|6666666.229910.peg.2063 CDS CP007502.1 2088594 2087743 -3 - 852 Formate efflux transporter (TC 2.A.44 family) Fermentations: Mixed acid
fig|6666666.229910.peg.2064 CDS CP007502.1 2088907 2089257 1 + 351 Bis(5@1-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17) pyrimidine conversions
fig|6666666.229910.peg.2065 CDS CP007502.1 2089258 2089611 1 + 354 Predicted periplasmic lipoprotein - none -
fig|6666666.229910.peg.2066 CDS CP007502.1 2089613 2090659 2 + 1047 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) Murein Hydrolases;
Recycling of Peptidoglycan Amino Sugars
fig|6666666.229910.peg.2067 CDS CP007502.1 2090661 2091803 3 + 1143 23S rRNA (Uracil-5-) -methyltransferase rumB (EC 2.1.1.-) RNA methylation
fig|6666666.229910.peg.2068 CDS CP007502.1 2092868 2091903 -2 - 966 6-phosphofructokinase (EC 2.7.1.11) D-Tagatose and Galactitol Utilization;
Glycolysis and Gluconeogenesis
fig|6666666.229910.peg.2069 CDS CP007502.1 2093376 2092930 -3 - 447 Cobalt-zinc-cadmium resistance protein Cobalt-zinc-cadmium resistance
fig|6666666.229910.peg.2070 CDS CP007502.1 2093844 2093506 -3 - 339 Cobalt-zinc-cadmium resistance protein Cobalt-zinc-cadmium resistance
fig|6666666.229910.peg.2071 CDS CP007502.1 2094410 2093844 -2 - 567 FIG00696199: hypothetical protein - none -
fig|6666666.229910.peg.2072 CDS CP007502.1 2095191 2094412 -3 - 780 UPF0246 protein YaaA - none -
fig|6666666.229910.peg.2073 CDS CP007502.1 2095881 2095213 -3 - 669 Uracil-DNA glycosylase, family 1 DNA Repair Base Excision;
Uracil-DNA glycosylase
fig|6666666.229910.peg.2074 CDS CP007502.1 2096167 2096550 1 + 384 Pyruvate formate-lyase (EC 2.3.1.54) Butanol Biosynthesis;
Fermentations: Mixed acid
fig|6666666.229910.peg.2075 CDS CP007502.1 2096714 2098510 2 + 1797 Translation elongation factor LepA Heat shock dnaK gene cluster extended;
Translation elongation factors bacterial;
Universal GTPases
fig|6666666.229910.peg.2076 CDS CP007502.1 2098521 2099543 3 + 1023 Signal peptidase I (EC 3.4.21.89) CBSS-176299.4.peg.1292;
Signal peptidase
fig|6666666.229910.peg.2077 CDS CP007502.1 2099550 2100230 3 + 681 Ribonuclease III (EC 3.1.26.3) CBSS-176299.4.peg.1292;
RNA processing and degradation, bacterial
fig|6666666.229910.peg.2078 CDS CP007502.1 2100227 2101135 2 + 909 GTP-binding protein Era Bacterial Cell Division;
CBSS-176299.4.peg.1292;
Glycyl-tRNA synthetase containing cluster;
Universal GTPases;
tRNA modification Archaea
fig|6666666.229910.peg.2079 CDS CP007502.1 2102594 2101239 -2 - 1356 GTPase and tRNA-U34 5-formylation enzyme TrmE Cell Division Subsystem including YidCD;
RNA modification and chromosome partitioning cluster;
RNA modification cluster;
Universal GTPases;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229910.peg.2080 CDS CP007502.1 2104311 2102722 -3 - 1590 Inner membrane protein translocase component YidC, long form CTP synthase (EC 6.3.4.2) cluster;
Cell Division Subsystem including YidCD;
RNA modification cluster
fig|6666666.229910.peg.2081 CDS CP007502.1 2104616 2104353 -2 - 264 Protein YidD Cell Division Subsystem including YidCD;
RNA modification cluster
fig|6666666.229910.peg.2082 CDS CP007502.1 2104906 2104571 -1 - 336 Ribonuclease P protein component (EC 3.1.26.5) Cell Division Subsystem including YidCD;
RNA modification cluster;
tRNA processing
fig|6666666.229910.peg.2083 CDS CP007502.1 2105086 2104952 -1 - 135 LSU ribosomal protein L34p Cell Division Subsystem including YidCD;
RNA modification cluster
fig|6666666.229910.rna.1 RNA CP007502.1 147785 147713 -2 - 73 tRNA-Ala-GGC tRNAs
fig|6666666.229910.rna.2 RNA CP007502.1 149595 149667 3 + 73 tRNA-Val-TAC - none -
fig|6666666.229910.rna.3 RNA CP007502.1 149709 149781 3 + 73 tRNA-Val-TAC - none -
fig|6666666.229910.rna.4 RNA CP007502.1 149812 149884 1 + 73 tRNA-Val-TAC - none -
fig|6666666.229910.rna.5 RNA CP007502.1 275510 275392 -2 - 119 5S RNA - none -
fig|6666666.229910.rna.6 RNA CP007502.1 278829 275772 -3 - 3058 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA - none -
fig|6666666.229910.rna.7 RNA CP007502.1 279111 279039 -3 - 73 tRNA-Glu-TTC - none -
fig|6666666.229910.rna.8 RNA CP007502.1 280746 279212 -3 - 1535 Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA - none -
fig|6666666.229910.rna.9 RNA CP007502.1 359140 359067 -1 - 74 tRNA-Arg-ACG tRNAs
fig|6666666.229910.rna.10 RNA CP007502.1 359271 359198 -3 - 74 tRNA-Arg-ACG tRNAs
fig|6666666.229910.rna.11 RNA CP007502.1 359382 359292 -3 - 91 tRNA-Ser-GCT - none -
fig|6666666.229910.rna.12 RNA CP007502.1 424895 424777 -2 - 119 5S RNA - none -
fig|6666666.229910.rna.13 RNA CP007502.1 428199 425156 -3 - 3044 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA - none -
fig|6666666.229910.rna.14 RNA CP007502.1 428554 428482 -1 - 73 tRNA-Ala-TGC - none -
fig|6666666.229910.rna.15 RNA CP007502.1 428680 428607 -1 - 74 tRNA-Ile-GAT - none -
fig|6666666.229910.rna.16 RNA CP007502.1 430296 428765 -3 - 1532 Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA - none -
fig|6666666.229910.rna.17 RNA CP007502.1 456968 457040 2 + 73 tRNA-Gly-GCC tRNAs
fig|6666666.229910.rna.18 RNA CP007502.1 457045 457129 1 + 85 tRNA-Leu-TAA - none -
fig|6666666.229910.rna.19 RNA CP007502.1 457185 457257 3 + 73 tRNA-Lys-TTT - none -
fig|6666666.229910.rna.20 RNA CP007502.1 510175 510092 -1 - 84 tRNA-Leu-CAG tRNAs
fig|6666666.229910.rna.21 RNA CP007502.1 540096 540014 -3 - 83 tRNA-Leu-GAG tRNAs
fig|6666666.229910.rna.22 RNA CP007502.1 612609 612682 3 + 74 tRNA-Met-CAT - none -
fig|6666666.229910.rna.23 RNA CP007502.1 641582 641654 2 + 73 tRNA-Thr-TGT - none -
fig|6666666.229910.rna.24 RNA CP007502.1 641688 641769 3 + 82 tRNA-Tyr-GTA - none -
fig|6666666.229910.rna.25 RNA CP007502.1 641813 641884 2 + 72 tRNA-Gly-TCC - none -
fig|6666666.229910.rna.26 RNA CP007502.1 641891 641963 2 + 73 tRNA-Thr-GGT - none -
fig|6666666.229910.rna.27 RNA CP007502.1 725224 725152 -1 - 73 tRNA-Asn-GTT - none -
fig|6666666.229910.rna.28 RNA CP007502.1 725304 725232 -3 - 73 tRNA-Phe-GAA tRNAs
fig|6666666.229910.rna.29 RNA CP007502.1 855350 856885 2 + 1536 Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA - none -
fig|6666666.229910.rna.30 RNA CP007502.1 856986 857058 3 + 73 tRNA-Glu-TTC - none -
fig|6666666.229910.rna.31 RNA CP007502.1 857268 860313 3 + 3046 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA - none -
fig|6666666.229910.rna.32 RNA CP007502.1 860574 860692 3 + 119 5S RNA - none -
fig|6666666.229910.rna.33 RNA CP007502.1 871460 871533 2 + 74 tRNA-Pro-TGG - none -
fig|6666666.229910.rna.34 RNA CP007502.1 871570 871643 1 + 74 tRNA-Arg-TCT - none -
fig|6666666.229910.rna.35 RNA CP007502.1 971997 971907 -3 - 91 tRNA-SeC(p)-TCA - none -
fig|6666666.229910.rna.36 RNA CP007502.1 1050719 1052253 2 + 1535 Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA - none -
fig|6666666.229910.rna.37 RNA CP007502.1 1052354 1052426 2 + 73 tRNA-Glu-TTC - none -
fig|6666666.229910.rna.38 RNA CP007502.1 1052636 1055682 2 + 3047 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA - none -
fig|6666666.229910.rna.39 RNA CP007502.1 1055943 1056061 3 + 119 5S RNA - none -
fig|6666666.229910.rna.40 RNA CP007502.1 1078271 1078199 -2 - 73 tRNA-Gly-GCC tRNAs
fig|6666666.229910.rna.41 RNA CP007502.1 1268683 1268756 1 + 74 tRNA-Met-CAT - none -
fig|6666666.229910.rna.42 RNA CP007502.1 1268765 1268846 2 + 82 tRNA-Leu-TAG - none -
fig|6666666.229910.rna.43 RNA CP007502.1 1268879 1268950 2 + 72 tRNA-Gln-TTG - none -
fig|6666666.229910.rna.44 RNA CP007502.1 1268991 1269062 3 + 72 tRNA-Gln-TTG - none -
fig|6666666.229910.rna.45 RNA CP007502.1 1292627 1292700 2 + 74 tRNA-Met-CAT - none -
fig|6666666.229910.rna.46 RNA CP007502.1 1546150 1546077 -1 - 74 tRNA-Val-GAC tRNAs
fig|6666666.229910.rna.47 RNA CP007502.1 1565783 1565665 -2 - 119 5S RNA - none -
fig|6666666.229910.rna.48 RNA CP007502.1 1569092 1566044 -2 - 3049 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA - none -
fig|6666666.229910.rna.49 RNA CP007502.1 1569447 1569375 -3 - 73 tRNA-Ala-TGC - none -
fig|6666666.229910.rna.50 RNA CP007502.1 1569573 1569500 -3 - 74 tRNA-Ile-GAT - none -
fig|6666666.229910.rna.51 RNA CP007502.1 1571192 1569658 -2 - 1535 Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA - none -
fig|6666666.229910.rna.52 RNA CP007502.1 1644477 1644563 3 + 87 tRNA-Ser-GGA tRNAs
fig|6666666.229910.rna.53 RNA CP007502.1 1662808 1662736 -1 - 73 tRNA-Trp-CCA tRNAs
fig|6666666.229910.rna.54 RNA CP007502.1 1662919 1662846 -1 - 74 tRNA-Asp-GTC - none -
fig|6666666.229910.rna.55 RNA CP007502.1 1663210 1663092 -1 - 119 5S RNA - none -
fig|6666666.229910.rna.56 RNA CP007502.1 1666515 1663471 -3 - 3045 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA - none -
fig|6666666.229910.rna.57 RNA CP007502.1 1666870 1666798 -1 - 73 tRNA-Ala-TGC - none -
fig|6666666.229910.rna.58 RNA CP007502.1 1666997 1666924 -2 - 74 tRNA-Ile-GAT - none -
fig|6666666.229910.rna.59 RNA CP007502.1 1668618 1667084 -3 - 1535 Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA - none -
fig|6666666.229910.rna.60 RNA CP007502.1 1668886 1668813 -1 - 74 tRNA-Pro-TGG - none -
fig|6666666.229910.rna.61 RNA CP007502.1 1668964 1668892 -1 - 73 tRNA-His-GTG - none -
fig|6666666.229910.rna.62 RNA CP007502.1 1669072 1668999 -1 - 74 tRNA-Arg-CCG tRNAs
fig|6666666.229910.rna.63 RNA CP007502.1 1719014 1719086 2 + 73 tRNA-Asn-GTT - none -
fig|6666666.229910.rna.64 RNA CP007502.1 1795230 1795312 3 + 83 tRNA-Leu-CAA tRNAs
fig|6666666.229910.rna.65 RNA CP007502.1 1934692 1934766 1 + 75 tRNA-Undet-??? - none -
fig|6666666.229910.rna.66 RNA CP007502.1 1934792 1934867 2 + 76 tRNA-Asp-GTC - none -
fig|6666666.229910.rna.67 RNA CP007502.1 1987964 1987891 -2 - 74 tRNA-Lys-CTT - none -
fig|6666666.229910.rna.68 RNA CP007502.1 1988065 1987993 -1 - 73 tRNA-Lys-TTT - none -
fig|6666666.229910.rna.69 RNA CP007502.1 1988167 1988095 -1 - 73 tRNA-Lys-TTT - none -
fig|6666666.229910.rna.70 RNA CP007502.1 2036222 2036136 -2 - 87 tRNA-Ser-TGA - none -
fig|6666666.229910.rna.71 RNA CP007502.1 2043578 2043650 2 + 73 tRNA-Gly-GCC tRNAs
fig|6666666.229910.rna.72 RNA CP007502.1 2043662 2043732 2 + 71 tRNA-Cys-GCA tRNAs
fig|6666666.229910.rna.73 RNA CP007502.1 2052248 2052175 -2 - 74 tRNA-Met-CAT - none -