fig|6666666.229911.peg.1 CDS AEJQ02000001.1 132 644 3 + 513 Peptide deformylase (EC 3.5.1.88) Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Translation termination factors bacterial
fig|6666666.229911.peg.2 CDS AEJQ02000001.1 710 1666 2 + 957 Methionyl-tRNA formyltransferase (EC 2.1.2.9) Conserved gene cluster associated with Met-tRNA formyltransferase;
Translation initiation factors bacterial
fig|6666666.229911.peg.3 CDS AEJQ02000001.1 1666 3021 1 + 1356 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) - none -
fig|6666666.229911.peg.4 CDS AEJQ02000001.1 3045 4421 3 + 1377 Trk system potassium uptake protein TrkA Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Hyperosmotic potassium uptake;
Potassium homeostasis;
Potassium homeostasis
fig|6666666.229911.peg.5 CDS AEJQ02000001.1 4531 4926 1 + 396 Large-conductance mechanosensitive channel Potassium homeostasis
fig|6666666.229911.peg.6 CDS AEJQ02000001.1 5021 5455 2 + 435 Ribonuclease E inhibitor RraB RNA processing and degradation, bacterial
fig|6666666.229911.peg.7 CDS AEJQ02000001.1 5506 6225 1 + 720 probable periplasmic protein NMA1059 - none -
fig|6666666.229911.peg.8 CDS AEJQ02000001.1 6320 6916 2 + 597 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) G3E family of P-loop GTPases (metallocenter biosynthesis);
Peptidyl-prolyl cis-trans isomerase;
Potassium homeostasis
fig|6666666.229911.peg.9 CDS AEJQ02000001.1 7206 6988 -3 - 219 hypothetical protein - none -
fig|6666666.229911.peg.10 CDS AEJQ02000001.1 7827 7333 -3 - 495 Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48) LMPTP YfkJ cluster;
Protein deglycation
fig|6666666.229911.peg.11 CDS AEJQ02000001.1 9193 7862 -1 - 1332 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase Methylthiotransferases;
Ribosomal protein S12p Asp methylthiotransferase
fig|6666666.229911.peg.12 CDS AEJQ02000001.1 9402 9686 3 + 285 hypothetical protein - none -
fig|6666666.229911.peg.13 CDS AEJQ02000001.1 9637 9999 1 + 363 FIG00696564: hypothetical protein - none -
fig|6666666.229911.peg.14 CDS AEJQ02000001.1 10453 10103 -1 - 351 Arsenate reductase (EC 1.20.4.1) Anaerobic respiratory reductases;
Arsenic resistance;
Transcription repair cluster
fig|6666666.229911.peg.15 CDS AEJQ02000001.1 10527 11588 3 + 1062 Putative permease PerM (= YfgO) - none -
fig|6666666.229911.peg.16 CDS AEJQ02000001.1 12483 11725 -3 - 759 Uridine phosphorylase (EC 2.4.2.3) pyrimidine conversions
fig|6666666.229911.peg.17 CDS AEJQ02000001.1 12969 12517 -3 - 453 Regulatory protein AsnC CBSS-262728.1.peg.1737
fig|6666666.229911.peg.18 CDS AEJQ02000001.1 13135 14127 1 + 993 Aspartate--ammonia ligase (EC 6.3.1.1) CBSS-262728.1.peg.1737;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229911.peg.19 CDS AEJQ02000001.1 15166 14183 -1 - 984 tRNA dihydrouridine synthase A - none -
fig|6666666.229911.peg.20 CDS AEJQ02000001.1 16443 15169 -3 - 1275 Chloride channel protein - none -
fig|6666666.229911.peg.21 CDS AEJQ02000001.1 16803 17807 3 + 1005 Ornithine carbamoyltransferase (EC 2.1.3.3) Arginine Deiminase Pathway;
Arginine and Ornithine Degradation
fig|6666666.229911.peg.22 CDS AEJQ02000001.1 17817 18749 3 + 933 Carbamate kinase (EC 2.7.2.2) Arginine Deiminase Pathway;
Arginine and Ornithine Degradation;
Polyamine Metabolism
fig|6666666.229911.peg.23 CDS AEJQ02000001.1 19010 20395 2 + 1386 Arginine/ornithine antiporter ArcD Arginine Deiminase Pathway;
Arginine and Ornithine Degradation;
Polyamine Metabolism
fig|6666666.229911.peg.24 CDS AEJQ02000001.1 20486 20953 2 + 468 Transcriptional regulator, AsnC family - none -
fig|6666666.229911.peg.25 CDS AEJQ02000001.1 22232 21051 -2 - 1182 Acetyl-CoA acetyltransferase (EC 2.3.1.9) Butanol Biosynthesis;
Isoprenoid Biosynthesis;
Polyhydroxybutyrate metabolism;
Serine-glyoxylate cycle
fig|6666666.229911.peg.26 CDS AEJQ02000001.1 23593 22250 -1 - 1344 Short chain fatty acids transporter Polyhydroxybutyrate metabolism
fig|6666666.229911.peg.27 CDS AEJQ02000001.1 24261 23596 -3 - 666 Acetyl-CoA:acetoacetyl-CoA transferase, beta subunit (EC 2.8.3.8) - none -
fig|6666666.229911.peg.28 CDS AEJQ02000001.1 24863 24273 -2 - 591 Acetyl-CoA:acetoacetyl-CoA transferase, alpha subunit (EC 2.8.3.8) - none -
fig|6666666.229911.peg.29 CDS AEJQ02000001.1 25200 26096 3 + 897 Transcriptional regulators, LysR family - none -
fig|6666666.229911.peg.30 CDS AEJQ02000001.1 26346 26657 3 + 312 SSU ribosomal protein S10p (S20e) Ribosome SSU bacterial
fig|6666666.229911.peg.31 CDS AEJQ02000001.1 26674 27300 1 + 627 LSU ribosomal protein L3p (L3e) Ribosome LSU bacterial
fig|6666666.229911.peg.32 CDS AEJQ02000001.1 27316 27918 1 + 603 LSU ribosomal protein L4p (L1e) Ribosome LSU bacterial
fig|6666666.229911.peg.33 CDS AEJQ02000001.1 27915 28217 3 + 303 LSU ribosomal protein L23p (L23Ae) Ribosome LSU bacterial
fig|6666666.229911.peg.34 CDS AEJQ02000001.1 28238 29059 2 + 822 LSU ribosomal protein L2p (L8e) Ribosome LSU bacterial
fig|6666666.229911.peg.35 CDS AEJQ02000001.1 29214 29360 3 + 147 SSU ribosomal protein S19p (S15e) Ribosome SSU bacterial
fig|6666666.229911.peg.36 CDS AEJQ02000001.1 29371 29703 1 + 333 LSU ribosomal protein L22p (L17e) Ribosome LSU bacterial
fig|6666666.229911.peg.37 CDS AEJQ02000001.1 29720 30427 2 + 708 SSU ribosomal protein S3p (S3e) Ribosome SSU bacterial
fig|6666666.229911.peg.38 CDS AEJQ02000001.1 30441 30851 3 + 411 LSU ribosomal protein L16p (L10e) Ribosome LSU bacterial
fig|6666666.229911.peg.39 CDS AEJQ02000001.1 30851 31042 2 + 192 LSU ribosomal protein L29p (L35e) Ribosome LSU bacterial
fig|6666666.229911.peg.40 CDS AEJQ02000001.1 31042 31299 1 + 258 SSU ribosomal protein S17p (S11e) Ribosome SSU bacterial
fig|6666666.229911.peg.41 CDS AEJQ02000003.1 632 129 -2 - 504 Mercuric resistance operon regulatory protein - none -
fig|6666666.229911.peg.42 CDS AEJQ02000003.1 971 660 -2 - 312 Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives DNA replication cluster 1
fig|6666666.229911.peg.43 CDS AEJQ02000003.1 938 1066 2 + 129 hypothetical protein - none -
fig|6666666.229911.peg.44 CDS AEJQ02000003.1 1063 1380 1 + 318 hypothetical protein - none -
fig|6666666.229911.peg.45 CDS AEJQ02000003.1 1390 4152 1 + 2763 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) - none -
fig|6666666.229911.peg.46 CDS AEJQ02000003.1 4229 4633 2 + 405 Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-) Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229911.peg.47 CDS AEJQ02000003.1 6159 5125 -3 - 1035 DNA polymerase III delta subunit (EC 2.7.7.7) CBSS-208964.1.peg.3988
fig|6666666.229911.peg.48 CDS AEJQ02000003.1 6662 6159 -2 - 504 LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B) CBSS-208964.1.peg.3988;
KDO2-Lipid A biosynthesis;
Lipopolysaccharide assembly
fig|6666666.229911.peg.49 CDS AEJQ02000003.1 6651 6779 3 + 129 hypothetical protein - none -
fig|6666666.229911.peg.50 CDS AEJQ02000003.1 9392 6804 -2 - 2589 Leucyl-tRNA synthetase (EC 6.1.1.4) CBSS-208964.1.peg.3988;
tRNA aminoacylation, Leu
fig|6666666.229911.peg.51 CDS AEJQ02000003.1 9540 9370 -3 - 171 hypothetical protein - none -
fig|6666666.229911.peg.52 CDS AEJQ02000003.1 9628 9512 -1 - 117 hypothetical protein - none -
fig|6666666.229911.peg.53 CDS AEJQ02000003.1 10140 9583 -3 - 558 FIG00696423: hypothetical protein - none -
fig|6666666.229911.peg.54 CDS AEJQ02000003.1 10461 10168 -3 - 294 nucleotidyltransferase - none -
fig|6666666.229911.peg.55 CDS AEJQ02000003.1 10864 10445 -1 - 420 nucleotidyltransferase substrate binding protein, HI0074 family - none -
fig|6666666.229911.peg.56 CDS AEJQ02000003.1 11782 10955 -1 - 828 Bis(5@1-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) - none -
fig|6666666.229911.peg.57 CDS AEJQ02000003.1 12661 11798 -1 - 864 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase (EC 2.1.1.182) RNA methylation;
Ribosome biogenesis bacterial
fig|6666666.229911.peg.58 CDS AEJQ02000003.1 13671 12739 -3 - 933 Survival protein SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA) (EC 5.2.1.8) Lipopolysaccharide assembly;
Peptidyl-prolyl cis-trans isomerase;
Periplasmic Stress Response
fig|6666666.229911.peg.59 CDS AEJQ02000003.1 14272 13736 -1 - 537 Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR De Novo Pyrimidine Synthesis;
De Novo Pyrimidine Synthesis;
pyrimidine conversions
fig|6666666.229911.peg.60 CDS AEJQ02000003.1 14821 14411 -1 - 411 Copper metallochaperone, bacterial analog of Cox17 protein Biogenesis of cytochrome c oxidases
fig|6666666.229911.peg.61 CDS AEJQ02000003.1 14934 15545 3 + 612 FIG002903: a protein of unknown function perhaps involved in purine metabolism CBSS-354.1.peg.876
fig|6666666.229911.peg.62 CDS AEJQ02000003.1 15569 16936 2 + 1368 Adenylosuccinate lyase (EC 4.3.2.2) CBSS-354.1.peg.876;
Purine conversions
fig|6666666.229911.peg.63 CDS AEJQ02000003.1 17052 17165 3 + 114 hypothetical protein - none -
fig|6666666.229911.peg.64 CDS AEJQ02000003.1 17252 17905 2 + 654 Sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140) - none -
fig|6666666.229911.peg.65 CDS AEJQ02000003.1 18150 18019 -3 - 132 Transcriptional regulator, MerR family Cobalt-zinc-cadmium resistance
fig|6666666.229911.peg.66 CDS AEJQ02000003.1 18426 18154 -3 - 273 Transcriptional regulator, MerR family Cobalt-zinc-cadmium resistance
fig|6666666.229911.peg.67 CDS AEJQ02000003.1 18564 19688 3 + 1125 S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) Glutathione-dependent pathway of formaldehyde detoxification
fig|6666666.229911.peg.68 CDS AEJQ02000003.1 19703 20533 2 + 831 S-formylglutathione hydrolase (EC 3.1.2.12) Glutathione-dependent pathway of formaldehyde detoxification
fig|6666666.229911.peg.69 CDS AEJQ02000003.1 20886 21020 3 + 135 hypothetical protein - none -
fig|6666666.229911.peg.70 CDS AEJQ02000003.1 22552 21173 -1 - 1380 Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1) Bacterial signal recognition particle (SRP)
fig|6666666.229911.peg.71 CDS AEJQ02000003.1 22706 23503 2 + 798 FIG001154: CcsA-related protein - none -
fig|6666666.229911.peg.72 CDS AEJQ02000003.1 23578 24840 1 + 1263 Magnesium and cobalt efflux protein CorC CBSS-56780.10.peg.1536;
Copper homeostasis: copper tolerance;
Glycyl-tRNA synthetase containing cluster;
Magnesium transport;
tRNA-methylthiotransferase containing cluster
fig|6666666.229911.peg.73 CDS AEJQ02000003.1 25015 25485 1 + 471 Ferric siderophore transport system, biopolymer transport protein ExbB Ton and Tol transport systems
fig|6666666.229911.peg.74 CDS AEJQ02000003.1 25489 25935 1 + 447 Biopolymer transport protein ExbD/TolR Ton and Tol transport systems
fig|6666666.229911.peg.75 CDS AEJQ02000003.1 25945 26703 1 + 759 Ferric siderophore transport system, periplasmic binding protein TonB Hemin transport system;
Ton and Tol transport systems
fig|6666666.229911.peg.76 CDS AEJQ02000003.1 27960 28214 3 + 255 hypothetical protein - none -
fig|6666666.229911.peg.77 CDS AEJQ02000003.1 28543 28722 1 + 180 hypothetical protein - none -
fig|6666666.229911.peg.78 CDS AEJQ02000003.1 28703 29851 2 + 1149 cell filamentation-like protein - none -
fig|6666666.229911.peg.79 CDS AEJQ02000003.1 29972 30409 2 + 438 cell filamentation-like protein - none -
fig|6666666.229911.peg.80 CDS AEJQ02000003.1 31194 31334 3 + 141 hypothetical protein - none -
fig|6666666.229911.peg.81 CDS AEJQ02000003.1 31469 33889 2 + 2421 Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-) Anaerobic respiratory reductases
fig|6666666.229911.peg.82 CDS AEJQ02000003.1 33900 34517 3 + 618 Anaerobic dimethyl sulfoxide reductase chain B (EC 1.8.5.3) - none -
fig|6666666.229911.peg.83 CDS AEJQ02000003.1 34519 35358 1 + 840 Anaerobic dimethyl sulfoxide reductase chain C (EC 1.8.5.3) - none -
fig|6666666.229911.peg.84 CDS AEJQ02000003.1 35406 36020 3 + 615 Putative oxidoreductase component of anaerobic dehydrogenases; Functional role page for Chaperone protein TorD - none -
fig|6666666.229911.peg.85 CDS AEJQ02000003.1 36034 36195 1 + 162 Ferredoxin-type protein NapF (periplasmic nitrate reductase) - none -
fig|6666666.229911.peg.86 CDS AEJQ02000003.1 36387 37292 3 + 906 Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14) Glycyl-tRNA synthetase;
Glycyl-tRNA synthetase containing cluster;
tRNA aminoacylation, Gly
fig|6666666.229911.peg.87 CDS AEJQ02000003.1 37342 37602 1 + 261 Glutaredoxin-related protein Glutaredoxins
fig|6666666.229911.peg.88 CDS AEJQ02000003.1 37770 38060 3 + 291 ISSo9, nucleotidyltransferase domain protein - none -
fig|6666666.229911.peg.89 CDS AEJQ02000003.1 38151 38855 3 + 705 hypothetical protein - none -
fig|6666666.229911.peg.90 CDS AEJQ02000003.1 38937 41018 3 + 2082 Glycyl-tRNA synthetase beta chain (EC 6.1.1.14) Glycyl-tRNA synthetase;
Glycyl-tRNA synthetase containing cluster;
tRNA aminoacylation, Gly
fig|6666666.229911.peg.91 CDS AEJQ02000003.1 42252 41230 -3 - 1023 Porphobilinogen synthase (EC 4.2.1.24) Heme and Siroheme Biosynthesis
fig|6666666.229911.peg.92 CDS AEJQ02000003.1 43035 42271 -3 - 765 Twin-arginine translocation protein TatC Cluster-based Subsystem Grouping Hypotheticals - perhaps Proteosome Related;
Twin-arginine translocation system
fig|6666666.229911.peg.93 CDS AEJQ02000003.1 43735 43073 -1 - 663 Twin-arginine translocation protein TatB Twin-arginine translocation system
fig|6666666.229911.peg.94 CDS AEJQ02000003.1 43963 43739 -1 - 225 Twin-arginine translocation protein TatA Cluster-based Subsystem Grouping Hypotheticals - perhaps Proteosome Related;
Twin-arginine translocation system
fig|6666666.229911.peg.95 CDS AEJQ02000003.1 45238 44366 -1 - 873 33 kDa chaperonin (Heat shock protein 33) (HSP33) CBSS-584.1.peg.3382
fig|6666666.229911.peg.96 CDS AEJQ02000003.1 45722 45306 -2 - 417 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) CBSS-584.1.peg.3382;
Cell division-ribosomal stress proteins cluster;
DNA replication cluster 1;
Heat shock dnaK gene cluster extended
fig|6666666.229911.peg.97 CDS AEJQ02000003.1 46394 45735 -2 - 660 FIG001957: putative hydrolase CBSS-584.1.peg.3382
fig|6666666.229911.peg.98 CDS AEJQ02000003.1 46433 47023 2 + 591 ADP compounds hydrolase NudE (EC 3.6.1.-) Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229911.peg.99 CDS AEJQ02000003.1 47909 47028 -2 - 882 Transcriptional regulator, AraC family - none -
fig|6666666.229911.peg.100 CDS AEJQ02000003.1 48605 47979 -2 - 627 membrane protein ykgB - none -
fig|6666666.229911.peg.101 CDS AEJQ02000003.1 48974 50980 2 + 2007 oligopeptide transporter - none -
fig|6666666.229911.peg.102 CDS AEJQ02000003.1 51042 51470 3 + 429 hypothetical protein - none -
fig|6666666.229911.peg.103 CDS AEJQ02000003.1 51508 52317 1 + 810 3@1(2@1),5@1-bisphosphate nucleotidase (EC 3.1.3.7) - none -
fig|6666666.229911.peg.104 CDS AEJQ02000003.1 52399 53883 1 + 1485 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) Entner-Doudoroff Pathway;
Pentose phosphate pathway
fig|6666666.229911.peg.105 CDS AEJQ02000003.1 54136 54834 1 + 699 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type Entner-Doudoroff Pathway;
Pentose phosphate pathway
fig|6666666.229911.peg.106 CDS AEJQ02000003.1 55161 55589 3 + 429 FIG00848466: hypothetical protein - none -
fig|6666666.229911.peg.107 CDS AEJQ02000003.1 55704 56396 3 + 693 Aspartate racemase (EC 5.1.1.13) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229911.peg.108 CDS AEJQ02000003.1 56409 56663 3 + 255 Glutaredoxin-related protein Glutaredoxins
fig|6666666.229911.peg.109 CDS AEJQ02000003.1 56743 57201 1 + 459 Uncharacterized virulence-associated protein D - none -
fig|6666666.229911.peg.110 CDS AEJQ02000003.1 57736 57590 -1 - 147 hypothetical protein - none -
fig|6666666.229911.peg.111 CDS AEJQ02000003.1 57757 59211 1 + 1455 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) D-gluconate and ketogluconates metabolism;
Pentose phosphate pathway
fig|6666666.229911.peg.112 CDS AEJQ02000003.1 60866 59622 -2 - 1245 FIG138576: 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229911.peg.113 CDS AEJQ02000003.1 61614 60886 -3 - 729 3-oxoacyl-[ACP] reductase (EC 1.1.1.100) Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229911.peg.114 CDS AEJQ02000003.1 62107 61664 -1 - 444 3-hydroxydecanoyl-[ACP] dehydratase (EC 4.2.1.60) Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229911.peg.115 CDS AEJQ02000003.1 63323 62100 -2 - 1224 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) FabV like Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229911.peg.116 CDS AEJQ02000003.1 63811 63332 -1 - 480 FIG085779: Lipoprotein Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229911.peg.117 CDS AEJQ02000003.1 66214 63941 -1 - 2274 FIG021862: membrane protein, exporter Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229911.peg.118 CDS AEJQ02000003.1 66805 66221 -1 - 585 FIG027190: Putative transmembrane protein Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229911.peg.119 CDS AEJQ02000003.1 67248 66802 -3 - 447 FIG002571: 4-hydroxybenzoyl-CoA thioesterase domain protein Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229911.peg.120 CDS AEJQ02000003.1 68171 67245 -2 - 927 Lysophospholipid acyltransferase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229911.peg.121 CDS AEJQ02000003.1 68890 68168 -1 - 723 FIG143263: Glycosyl transferase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229911.peg.122 CDS AEJQ02000003.1 70251 68890 -3 - 1362 FIGfam138462: Acyl-CoA synthetase, AMP-(fatty) acid ligase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229911.peg.123 CDS AEJQ02000003.1 70793 70248 -2 - 546 FIG017861: hypothetical protein Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229911.peg.124 CDS AEJQ02000003.1 72485 70818 -2 - 1668 FIGfam138462: Acyl-CoA synthetase, AMP-(fatty) acid ligase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229911.peg.125 CDS AEJQ02000003.1 72736 72485 -1 - 252 Acyl carrier protein (ACP2) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229911.peg.126 CDS AEJQ02000003.1 73002 72739 -3 - 264 Acyl carrier protein (ACP1) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229911.peg.127 CDS AEJQ02000003.1 73768 72980 -1 - 789 FIG018329: 1-acyl-sn-glycerol-3-phosphate acyltransferase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229911.peg.128 CDS AEJQ02000003.1 74496 73753 -3 - 744 3-oxoacyl-[ACP] synthase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229911.peg.129 CDS AEJQ02000003.1 74849 74526 -2 - 324 hypothetical protein - none -
fig|6666666.229911.peg.130 CDS AEJQ02000003.1 74877 75302 3 + 426 Excinuclease ATPase subunit - none -
fig|6666666.229911.peg.131 CDS AEJQ02000003.1 76116 75403 -3 - 714 Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5@1-phosphoribitylamino)uracil phosphatase Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants
fig|6666666.229911.peg.132 CDS AEJQ02000003.1 77020 76130 -1 - 891 Tyrosine recombinase XerC - none -
fig|6666666.229911.peg.133 CDS AEJQ02000003.1 77854 77030 -1 - 825 Diaminopimelate epimerase (EC 5.1.1.7) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229911.peg.134 CDS AEJQ02000003.1 78112 77933 -1 - 180 hypothetical protein - none -
fig|6666666.229911.peg.135 CDS AEJQ02000003.1 79140 78112 -3 - 1029 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) - none -
fig|6666666.229911.peg.136 CDS AEJQ02000003.1 79323 79823 3 + 501 hypothetical protein - none -
fig|6666666.229911.peg.137 CDS AEJQ02000003.1 79796 79915 2 + 120 hypothetical protein - none -
fig|6666666.229911.peg.138 CDS AEJQ02000003.1 82495 79925 -1 - 2571 ClpB protein Protein chaperones;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229911.peg.139 CDS AEJQ02000003.1 82760 83047 2 + 288 Late competence protein ComEA, DNA receptor - none -
fig|6666666.229911.peg.140 CDS AEJQ02000003.1 83116 83340 1 + 225 Late competence protein ComEA, DNA receptor - none -
fig|6666666.229911.peg.141 CDS AEJQ02000003.1 84525 83413 -3 - 1113 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch;
Threonine and Homoserine Biosynthesis
fig|6666666.229911.peg.142 CDS AEJQ02000003.1 85521 84709 -3 - 813 HMP-PP hydrolase (pyridoxal phosphatase) Cof, detected in genetic screen for thiamin metabolic genes (PMID:15292217) - none -
fig|6666666.229911.peg.143 CDS AEJQ02000003.1 85548 85670 3 + 123 hypothetical protein - none -
fig|6666666.229911.peg.144 CDS AEJQ02000003.1 85667 86353 2 + 687 Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy Biotin biosynthesis Experimental;
Biotin synthesis cluster;
CBSS-216591.1.peg.168
fig|6666666.229911.peg.145 CDS AEJQ02000003.1 86470 87054 1 + 585 NfuA Fe-S protein maturation Biotin biosynthesis Experimental;
DNA uptake cluster
fig|6666666.229911.peg.146 CDS AEJQ02000003.1 87402 87241 -3 - 162 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) / Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) Riboflavin synthesis cluster
fig|6666666.229911.peg.147 CDS AEJQ02000003.1 88852 87551 -1 - 1302 Branched-chain amino acid transport system carrier protein - none -
fig|6666666.229911.peg.148 CDS AEJQ02000003.1 89080 90714 1 + 1635 CTP synthase (EC 6.3.4.2) CTP synthase (EC 6.3.4.2) cluster;
pyrimidine conversions
fig|6666666.229911.peg.149 CDS AEJQ02000005.1 1433 66 -2 - 1368 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229911.peg.150 CDS AEJQ02000005.1 1619 2695 2 + 1077 hypothetical tRNA/rRNA methyltransferase yfiF [EC:2.1.1.-] RNA methylation;
tRNA modification Bacteria
fig|6666666.229911.peg.151 CDS AEJQ02000005.1 2982 2761 -3 - 222 4Fe-4S ferredoxin, iron-sulfur binding - none -
fig|6666666.229911.peg.152 CDS AEJQ02000005.1 3089 3784 2 + 696 Probable ribonuclease HI0526 precursor - none -
fig|6666666.229911.peg.153 CDS AEJQ02000005.1 3897 5060 3 + 1164 Phosphoglycerate kinase (EC 2.7.2.3) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis
fig|6666666.229911.peg.154 CDS AEJQ02000005.1 5125 6204 1 + 1080 Fructose-bisphosphate aldolase class II (EC 4.1.2.13) Glycolysis and Gluconeogenesis
fig|6666666.229911.peg.155 CDS AEJQ02000005.1 6378 6217 -3 - 162 hypothetical protein - none -
fig|6666666.229911.peg.156 CDS AEJQ02000005.1 6412 7554 1 + 1143 O-antigen ligase LOS core oligosaccharide biosynthesis
fig|6666666.229911.peg.157 CDS AEJQ02000005.1 7547 8470 2 + 924 Lysophospholipase L2 (EC 3.1.1.5) Triacylglycerol metabolism
fig|6666666.229911.peg.158 CDS AEJQ02000005.1 9326 8508 -2 - 819 Cof protein, HD superfamily hydrolase Housecleaning nucleoside triphosphate pyrophosphatases
fig|6666666.229911.peg.159 CDS AEJQ02000005.1 9613 10497 1 + 885 Acetolactate synthase large subunit (EC 2.2.1.6) - none -
fig|6666666.229911.peg.160 CDS AEJQ02000005.1 10571 10978 2 + 408 Threonine dehydratase biosynthetic (EC 4.3.1.19) - none -
fig|6666666.229911.peg.161 CDS AEJQ02000005.1 11029 11445 1 + 417 Threonine dehydratase biosynthetic (EC 4.3.1.19) - none -
fig|6666666.229911.peg.162 CDS AEJQ02000005.1 12514 11579 -1 - 936 Cell division protein FtsX Bacterial Cell Division
fig|6666666.229911.peg.163 CDS AEJQ02000005.1 13173 12523 -3 - 651 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) Bacterial Cell Division
fig|6666666.229911.peg.164 CDS AEJQ02000005.1 14128 13454 -1 - 675 Phosphoglycolate phosphatase (EC 3.1.3.18) 2-phosphoglycolate salvage;
Glycolate, glyoxylate interconversions
fig|6666666.229911.peg.165 CDS AEJQ02000005.1 14805 14131 -3 - 675 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) Conserved gene cluster associated with Met-tRNA formyltransferase;
Pentose phosphate pathway;
Riboflavin synthesis cluster
fig|6666666.229911.peg.166 CDS AEJQ02000005.1 14957 15235 2 + 279 Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage Bacterial Cell Division;
Bacterial Cytoskeleton;
Cell division-ribosomal stress proteins cluster;
Stationary phase repair cluster
fig|6666666.229911.peg.167 CDS AEJQ02000005.1 15235 15930 1 + 696 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC 2.7.7.60) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis;
Stationary phase repair cluster
fig|6666666.229911.peg.168 CDS AEJQ02000005.1 15927 16406 3 + 480 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis;
Stationary phase repair cluster
fig|6666666.229911.peg.169 CDS AEJQ02000005.1 16403 17413 2 + 1011 tRNA pseudouridine 13 synthase (EC 4.2.1.-) Stationary phase repair cluster;
tRNA modification Archaea;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229911.peg.170 CDS AEJQ02000005.1 17446 18186 1 + 741 5-nucleotidase SurE (EC 3.1.3.5) @ Exopolyphosphatase (EC 3.6.1.11) Housecleaning nucleoside triphosphate pyrophosphatases;
Phosphate metabolism;
Polyphosphate;
Stationary phase repair cluster
fig|6666666.229911.peg.171 CDS AEJQ02000005.1 18214 18789 1 + 576 FIG139438: lipoprotein B Stationary phase repair cluster
fig|6666666.229911.peg.172 CDS AEJQ02000005.1 18804 18995 3 + 192 Cobalamin biosynthesis protein CobN and related Mg-chelatases - none -
fig|6666666.229911.peg.173 CDS AEJQ02000005.1 19012 20181 1 + 1170 Lipoprotein NlpD Stationary phase repair cluster
fig|6666666.229911.peg.174 CDS AEJQ02000005.1 21613 20852 -1 - 762 Lipopolysaccharide biosynthesis glycosyltransferase - none -
fig|6666666.229911.peg.175 CDS AEJQ02000005.1 21712 22995 1 + 1284 3-deoxy-D-manno-octulosonic-acid transferase (EC 2.-.-.-) KDO2-Lipid A biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.229911.peg.176 CDS AEJQ02000005.1 22996 23481 1 + 486 Phosphopantetheine adenylyltransferase (EC 2.7.7.3) CBSS-266117.6.peg.1260;
CBSS-269801.1.peg.1715;
Coenzyme A Biosynthesis
fig|6666666.229911.peg.177 CDS AEJQ02000005.1 24304 23543 -1 - 762 3-deoxy-D-manno-octulosonic acid kinase (EC 2.7.1.-) - none -
fig|6666666.229911.peg.178 CDS AEJQ02000005.1 24357 25400 3 + 1044 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) LOS core oligosaccharide biosynthesis
fig|6666666.229911.peg.179 CDS AEJQ02000005.1 25838 25497 -2 - 342 Possible carboxymuconolactone decarboxylase family protein (EC 4.1.1.44) - none -
fig|6666666.229911.peg.180 CDS AEJQ02000005.1 25942 26859 1 + 918 transcriptional regulator MtrA - none -
fig|6666666.229911.peg.181 CDS AEJQ02000005.1 26947 28791 1 + 1845 Lipid A export ATP-binding/permease protein MsbA - none -
fig|6666666.229911.peg.182 CDS AEJQ02000005.1 31270 28832 -1 - 2439 Glycerol-3-phosphate acyltransferase (EC 2.3.1.15) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229911.peg.183 CDS AEJQ02000005.1 31478 32101 2 + 624 SOS-response repressor and protease LexA (EC 3.4.21.88) DNA repair, bacterial
fig|6666666.229911.peg.184 CDS AEJQ02000005.1 32253 32630 3 + 378 SSU ribosomal protein S6p Primosomal replication protein N clusters with ribosomal proteins;
Ribosome SSU bacterial
fig|6666666.229911.peg.185 CDS AEJQ02000005.1 32617 32943 1 + 327 Primosomal replication protein N Primosomal replication protein N clusters with ribosomal proteins
fig|6666666.229911.peg.186 CDS AEJQ02000005.1 32956 33186 1 + 231 SSU ribosomal protein S18p @ SSU ribosomal protein S18p, zinc-independent Primosomal replication protein N clusters with ribosomal proteins;
Ribosome SSU bacterial;
Ribosome SSU bacterial
fig|6666666.229911.peg.187 CDS AEJQ02000005.1 33202 33651 1 + 450 LSU ribosomal protein L9p Primosomal replication protein N clusters with ribosomal proteins;
Ribosome LSU bacterial
fig|6666666.229911.peg.188 CDS AEJQ02000005.1 33871 34989 1 + 1119 Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake CBSS-272943.3.peg.1367;
Conserved gene cluster associated with Met-tRNA formyltransferase
fig|6666666.229911.peg.189 CDS AEJQ02000005.1 36128 35046 -2 - 1083 Glycerophosphoryl diester phosphodiesterase, periplasmic (EC 3.1.4.46) - none -
fig|6666666.229911.peg.190 CDS AEJQ02000005.1 37804 36362 -1 - 1443 Glycerol-3-phosphate transporter - none -
fig|6666666.229911.peg.191 CDS AEJQ02000005.1 37994 37824 -2 - 171 hypothetical protein - none -
fig|6666666.229911.peg.192 CDS AEJQ02000005.1 38874 38137 -3 - 738 23S rRNA (guanosine-2@1-O-) -methyltransferase rlmB (EC 2.1.1.-) RNA methylation
fig|6666666.229911.peg.193 CDS AEJQ02000005.1 41276 38871 -2 - 2406 3@1-to-5@1 exoribonuclease RNase R RNA processing and degradation, bacterial
fig|6666666.229911.peg.194 CDS AEJQ02000005.1 41526 42581 3 + 1056 Rod shape-determining protein MreB Bacterial Cell Division;
Bacterial Cytoskeleton
fig|6666666.229911.peg.195 CDS AEJQ02000005.1 42651 43724 3 + 1074 Rod shape-determining protein MreC Bacterial Cell Division;
Bacterial Cytoskeleton;
CBSS-354.1.peg.2917
fig|6666666.229911.peg.196 CDS AEJQ02000005.1 43724 44212 2 + 489 Rod shape-determining protein MreD Bacterial Cell Division;
Bacterial Cytoskeleton;
CBSS-354.1.peg.2917
fig|6666666.229911.peg.197 CDS AEJQ02000005.1 44672 44322 -2 - 351 LSU ribosomal protein L19p Ribosome LSU bacterial
fig|6666666.229911.peg.198 CDS AEJQ02000005.1 45447 44698 -3 - 750 tRNA (Guanine37-N1) -methyltransferase (EC 2.1.1.31) RNA methylation;
Ribosome biogenesis bacterial;
tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229911.peg.199 CDS AEJQ02000005.1 46040 45513 -2 - 528 16S rRNA processing protein RimM Ribosome biogenesis bacterial
fig|6666666.229911.peg.200 CDS AEJQ02000005.1 46314 46066 -3 - 249 SSU ribosomal protein S16p Ribosome SSU bacterial
fig|6666666.229911.peg.201 CDS AEJQ02000005.1 46500 46655 3 + 156 hypothetical protein - none -
fig|6666666.229911.peg.202 CDS AEJQ02000005.1 48096 46810 -3 - 1287 Xaa-Pro aminopeptidase (EC 3.4.11.9) Aminopeptidases (EC 3.4.11.-);
CBSS-87626.3.peg.3639
fig|6666666.229911.peg.203 CDS AEJQ02000005.1 48674 48126 -2 - 549 FIG001590: Putative conserved exported protein precursor CBSS-87626.3.peg.3639
fig|6666666.229911.peg.204 CDS AEJQ02000005.1 48833 49159 2 + 327 Z-ring-associated protein ZapA Bacterial Cytoskeleton
fig|6666666.229911.peg.205 CDS AEJQ02000005.1 49453 50028 1 + 576 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) 5-FCL-like protein;
Folate Biosynthesis;
One-carbon metabolism by tetrahydropterines;
Serine-glyoxylate cycle
fig|6666666.229911.peg.206 CDS AEJQ02000005.1 50852 50064 -2 - 789 Probable component of the lipoprotein assembly complex (forms a complex with YaeT, YfgL, and NlpB) Lipopolysaccharide assembly
fig|6666666.229911.peg.207 CDS AEJQ02000005.1 50959 51933 1 + 975 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) RNA pseudouridine syntheses;
Ribosome biogenesis bacterial
fig|6666666.229911.peg.208 CDS AEJQ02000005.1 51935 52672 2 + 738 COG1496: Uncharacterized conserved protein - none -
fig|6666666.229911.peg.209 CDS AEJQ02000005.1 54815 52842 -2 - 1974 Phosphoglycerol transferase I (EC 2.7.8.20) Synthesis of osmoregulated periplasmic glucans
fig|6666666.229911.peg.210 CDS AEJQ02000005.1 55539 54880 -3 - 660 Oxygen-insensitive NAD(P)H nitroreductase (EC 1.-.-.-) / Dihydropteridine reductase (EC 1.5.1.34) - none -
fig|6666666.229911.peg.211 CDS AEJQ02000005.1 55949 55656 -2 - 294 COG1872 - none -
fig|6666666.229911.peg.212 CDS AEJQ02000005.1 56534 55974 -2 - 561 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) CBSS-630.2.peg.3360
fig|6666666.229911.peg.213 CDS AEJQ02000005.1 57497 56550 -2 - 948 Magnesium and cobalt transport protein CorA Magnesium transport
fig|6666666.229911.peg.214 CDS AEJQ02000005.1 58950 58150 -3 - 801 Orf2 - none -
fig|6666666.229911.peg.215 CDS AEJQ02000005.1 59004 59135 3 + 132 hypothetical protein - none -
fig|6666666.229911.peg.216 CDS AEJQ02000005.1 62202 59104 -3 - 3099 RND multidrug efflux transporter; Acriflavin resistance protein Multidrug Resistance Efflux Pumps
fig|6666666.229911.peg.217 CDS AEJQ02000005.1 63412 62216 -1 - 1197 Probable Co/Zn/Cd efflux system membrane fusion protein Cobalt-zinc-cadmium resistance
fig|6666666.229911.peg.218 CDS AEJQ02000005.1 64004 63438 -2 - 567 Probable Co/Zn/Cd efflux system membrane fusion protein Cobalt-zinc-cadmium resistance
fig|6666666.229911.peg.219 CDS AEJQ02000005.1 65016 64204 -3 - 813 Cell division protein - none -
fig|6666666.229911.peg.220 CDS AEJQ02000005.1 67324 65126 -1 - 2199 Helicase PriA essential for oriC/DnaA-independent DNA replication Conserved gene cluster associated with Met-tRNA formyltransferase
fig|6666666.229911.peg.221 CDS AEJQ02000005.1 67552 68415 1 + 864 Involved in lipopolysaccharide biosynthesis - none -
fig|6666666.229911.peg.222 CDS AEJQ02000005.1 69426 68422 -3 - 1005 putative capsular polysaccharide synthesis protein - none -
fig|6666666.229911.peg.223 CDS AEJQ02000005.1 70283 69435 -2 - 849 Lipooligosaccharide biosynthesis protein lex-1 (EC 2.-.-.-) - none -
fig|6666666.229911.peg.224 CDS AEJQ02000005.1 70541 70753 2 + 213 LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-dependent Ribosome LSU bacterial;
Ribosome LSU bacterial
fig|6666666.229911.peg.225 CDS AEJQ02000005.1 70816 71508 1 + 693 Beta-1,4-galactosyltransferase LOS core oligosaccharide biosynthesis
fig|6666666.229911.peg.226 CDS AEJQ02000005.1 71509 72531 1 + 1023 COG0859: ADP-heptose:LPS heptosyltransferase - none -
fig|6666666.229911.peg.227 CDS AEJQ02000005.1 72541 73593 1 + 1053 COG0859: ADP-heptose:LPS heptosyltransferase - none -
fig|6666666.229911.peg.228 CDS AEJQ02000005.1 74453 73596 -2 - 858 Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) DNA Repair Base Excision
fig|6666666.229911.peg.229 CDS AEJQ02000005.1 74663 74493 -2 - 171 LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-independent Ribosome LSU bacterial;
Ribosome LSU bacterial
fig|6666666.229911.peg.230 CDS AEJQ02000005.1 74848 74675 -1 - 174 LSU ribosomal protein L28p Ribosome LSU bacterial
fig|6666666.229911.peg.231 CDS AEJQ02000005.1 75779 75120 -2 - 660 DNA repair protein RadC DNA repair, bacterial
fig|6666666.229911.peg.232 CDS AEJQ02000005.1 75982 75830 -1 - 153 hypothetical protein - none -
fig|6666666.229911.peg.233 CDS AEJQ02000005.1 75957 77156 3 + 1200 Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) / Phosphopantothenoylcysteine synthetase (EC 6.3.2.5) Coenzyme A Biosynthesis;
Coenzyme A Biosynthesis
fig|6666666.229911.peg.234 CDS AEJQ02000005.1 77225 77680 2 + 456 Deoxyuridine 5@1-triphosphate nucleotidohydrolase (EC 3.6.1.23) Housecleaning nucleoside triphosphate pyrophosphatases;
Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229911.peg.235 CDS AEJQ02000005.1 77680 78279 1 + 600 Transcriptional regulator SlmA, TetR family - none -
fig|6666666.229911.peg.236 CDS AEJQ02000005.1 78303 78521 3 + 219 FIG00696234: hypothetical protein - none -
fig|6666666.229911.peg.237 CDS AEJQ02000005.1 78559 79203 1 + 645 Cyclic AMP receptor protein cAMP signaling in bacteria
fig|6666666.229911.peg.238 CDS AEJQ02000005.1 80706 79336 -3 - 1371 Glutathione reductase (EC 1.8.1.7) Glutathione: Redox cycle
fig|6666666.229911.peg.239 CDS AEJQ02000005.1 81646 80801 -1 - 846 Protein involved in catabolism of external DNA DNA processing cluster;
DNA uptake cluster
fig|6666666.229911.peg.240 CDS AEJQ02000005.1 84308 81741 -2 - 2568 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) DNA uptake cluster;
Peptidoglycan Biosynthesis;
Type IV pilus
fig|6666666.229911.peg.241 CDS AEJQ02000005.1 84442 85251 1 + 810 Type IV pilus biogenesis protein PilM; Competence protein A DNA uptake cluster;
Type IV pilus
fig|6666666.229911.peg.242 CDS AEJQ02000005.1 85262 85780 2 + 519 Type IV pilus biogenesis protein PilN; Competence protein B DNA uptake cluster;
Type IV pilus
fig|6666666.229911.peg.243 CDS AEJQ02000005.1 85777 86301 1 + 525 Competence protein C; Chromosome segregation ATPases DNA uptake cluster
fig|6666666.229911.peg.244 CDS AEJQ02000005.1 86301 86693 3 + 393 Type IV pilus biogenesis protein PilQ; Competence protein D DNA uptake cluster;
Type IV pilus
fig|6666666.229911.peg.245 CDS AEJQ02000005.1 86713 88122 1 + 1410 Type IV pilus biogenesis protein PilQ; Competence protein E DNA uptake cluster;
Type IV pilus
fig|6666666.229911.peg.246 CDS AEJQ02000005.1 88336 88863 1 + 528 Shikimate kinase I (EC 2.7.1.71) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229911.peg.247 CDS AEJQ02000005.1 88887 89975 3 + 1089 3-dehydroquinate synthase (EC 4.2.3.4) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate);
Type IV pilus
fig|6666666.229911.peg.248 CDS AEJQ02000005.1 89978 90832 2 + 855 Methyl-directed repair DNA adenine methylase (EC 2.1.1.72) DNA repair, bacterial
fig|6666666.229911.peg.249 CDS AEJQ02000005.1 91417 90938 -1 - 480 Single-stranded DNA-binding protein DNA repair, bacterial;
DNA repair, bacterial RecFOR pathway
fig|6666666.229911.peg.250 CDS AEJQ02000005.1 91587 94418 3 + 2832 Excinuclease ABC subunit A DNA repair, UvrABC system
fig|6666666.229911.peg.251 CDS AEJQ02000006.1 691 443 -1 - 249 hypothetical protein - none -
fig|6666666.229911.peg.252 CDS AEJQ02000006.1 982 770 -1 - 213 hypothetical protein - none -
fig|6666666.229911.peg.253 CDS AEJQ02000006.1 1115 2260 2 + 1146 FIG00698503: hypothetical protein - none -
fig|6666666.229911.peg.254 CDS AEJQ02000006.1 2281 2610 1 + 330 putative single stranded DNA-binding protien - none -
fig|6666666.229911.peg.255 CDS AEJQ02000006.1 3088 3309 1 + 222 hypothetical protein - none -
fig|6666666.229911.peg.256 CDS AEJQ02000006.1 3419 4588 2 + 1170 hypothetical protein - none -
fig|6666666.229911.peg.257 CDS AEJQ02000006.1 4596 4901 3 + 306 putative phage-related membrane protein - none -
fig|6666666.229911.peg.258 CDS AEJQ02000006.1 4909 6039 1 + 1131 putative phage-related secreted protein - none -
fig|6666666.229911.peg.259 CDS AEJQ02000007.1 1082 141 -2 - 942 Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229911.peg.260 CDS AEJQ02000007.1 1245 2732 3 + 1488 Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229911.peg.261 CDS AEJQ02000007.1 2748 3776 3 + 1029 Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229911.peg.262 CDS AEJQ02000007.1 3782 5239 2 + 1458 L-xylulose/3-keto-L-gulonate kinase (EC 2.7.1.-) L-ascorbate utilization (and related gene clusters)
fig|6666666.229911.peg.263 CDS AEJQ02000007.1 7602 5287 -3 - 2316 Transcription accessory protein (S1 RNA-binding domain) CBSS-243265.1.peg.198;
Cell division-ribosomal stress proteins cluster;
Transcription factors bacterial
fig|6666666.229911.peg.264 CDS AEJQ02000007.1 8706 7819 -3 - 888 RuBisCO operon transcriptional regulator CO2 uptake, carboxysome
fig|6666666.229911.peg.265 CDS AEJQ02000007.1 8816 10285 2 + 1470 Sodium-dependent transporter - none -
fig|6666666.229911.peg.266 CDS AEJQ02000007.1 10297 10896 1 + 600 Phosphoglycerate mutase (EC 5.4.2.1) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis;
Phosphoglycerate mutase protein family
fig|6666666.229911.peg.267 CDS AEJQ02000007.1 11420 11286 -2 - 135 Transcription accessory protein (S1 RNA-binding domain) CBSS-243265.1.peg.198;
Cell division-ribosomal stress proteins cluster;
Transcription factors bacterial
fig|6666666.229911.peg.268 CDS AEJQ02000007.1 11631 12113 3 + 483 Transcription elongation factor GreB CBSS-243265.1.peg.198;
Transcription factors bacterial
fig|6666666.229911.peg.269 CDS AEJQ02000007.1 12387 12196 -3 - 192 hypothetical protein - none -
fig|6666666.229911.peg.270 CDS AEJQ02000007.1 12989 12402 -2 - 588 DNA-directed RNA polymerase specialized sigma subunit, sigma24-like - none -
fig|6666666.229911.peg.271 CDS AEJQ02000007.1 13456 13175 -1 - 282 hypothetical protein - none -
fig|6666666.229911.peg.272 CDS AEJQ02000007.1 13718 14455 2 + 738 Putative preQ0 transporter Queuosine-Archaeosine Biosynthesis
fig|6666666.229911.peg.273 CDS AEJQ02000007.1 15773 14496 -2 - 1278 Uncharacterized protein EC-HemY, likely associated with heme metabolism based on gene clustering with hemC, hemD in Proteobacteria (unrelated to HemY-type PPO in GramPositives) - none -
fig|6666666.229911.peg.274 CDS AEJQ02000007.1 17171 15786 -2 - 1386 Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) Heme and Siroheme Biosynthesis
fig|6666666.229911.peg.275 CDS AEJQ02000007.1 17948 17202 -2 - 747 Uroporphyrinogen-III synthase (EC 4.2.1.75) Heme and Siroheme Biosynthesis
fig|6666666.229911.peg.276 CDS AEJQ02000007.1 18887 17961 -2 - 927 Porphobilinogen deaminase (EC 2.5.1.61) Heme and Siroheme Biosynthesis
fig|6666666.229911.peg.277 CDS AEJQ02000007.1 19043 21544 2 + 2502 Adenylate cyclase (EC 4.6.1.1) cAMP signaling in bacteria
fig|6666666.229911.peg.278 CDS AEJQ02000007.1 21554 22183 2 + 630 Nitrate/nitrite response regulator protein - none -
fig|6666666.229911.peg.279 CDS AEJQ02000007.1 22250 24109 2 + 1860 Uncharacterized protein YtfM precursor Cluster Ytf and putative sugar transporter;
Putative sugar ABC transporter (ytf cluster)
fig|6666666.229911.peg.280 CDS AEJQ02000007.1 24137 28015 2 + 3879 Uncharacterized protein YtfN Cluster Ytf and putative sugar transporter;
Putative sugar ABC transporter (ytf cluster)
fig|6666666.229911.peg.281 CDS AEJQ02000007.1 28018 29565 1 + 1548 Exopolyphosphatase (EC 3.6.1.11) Phosphate metabolism;
Polyphosphate
fig|6666666.229911.peg.282 CDS AEJQ02000007.1 31246 29630 -1 - 1617 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) CBSS-584.1.peg.3382;
Pyruvate metabolism I: anaplerotic reactions, PEP;
Serine-glyoxylate cycle
fig|6666666.229911.peg.283 CDS AEJQ02000007.1 31504 32148 1 + 645 converved hypothetical protein - none -
fig|6666666.229911.peg.284 CDS AEJQ02000007.1 32197 33087 1 + 891 NADH pyrophosphatase (EC 3.6.1.22) DNA uptake cluster;
Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229911.peg.285 CDS AEJQ02000007.1 33084 34148 3 + 1065 Uroporphyrinogen III decarboxylase (EC 4.1.1.37) Heme and Siroheme Biosynthesis
fig|6666666.229911.peg.286 CDS AEJQ02000007.1 34166 34756 2 + 591 FIG01200173: hypothetical protein - none -
fig|6666666.229911.peg.287 CDS AEJQ02000007.1 34923 35195 3 + 273 DNA-binding protein HU-alpha DNA structural proteins, bacterial;
DNA uptake cluster
fig|6666666.229911.peg.288 CDS AEJQ02000007.1 35342 36118 2 + 777 Transcriptional regulator of glmS gene, DeoR family - none -
fig|6666666.229911.peg.289 CDS AEJQ02000007.1 36173 38008 2 + 1836 Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) Sialic Acid Metabolism;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229911.peg.290 CDS AEJQ02000007.1 39225 38161 -3 - 1065 FIG01220323: hypothetical protein - none -
fig|6666666.229911.peg.291 CDS AEJQ02000007.1 39325 40215 1 + 891 Transcriptional regulator, LysR family - none -
fig|6666666.229911.peg.292 CDS AEJQ02000007.1 41463 40354 -3 - 1110 Putative exported protein precursor - none -
fig|6666666.229911.peg.293 CDS AEJQ02000007.1 41931 41599 -3 - 333 Carboxylesterase type B - none -
fig|6666666.229911.peg.294 CDS AEJQ02000007.1 43254 42199 -3 - 1056 Carboxylesterase type B - none -
fig|6666666.229911.peg.295 CDS AEJQ02000007.1 44460 43480 -3 - 981 Aldo-keto reductase - none -
fig|6666666.229911.peg.296 CDS AEJQ02000007.1 45369 44524 -3 - 846 oxidoreductase of aldo/keto reductase family, subgroup 1 - none -
fig|6666666.229911.peg.297 CDS AEJQ02000007.1 45728 46621 2 + 894 Transcriptional regulator, LysR family - none -
fig|6666666.229911.peg.298 CDS AEJQ02000007.1 47463 46699 -3 - 765 putative tetracenomycin polyketide synthesis O-methyltransferase - none -
fig|6666666.229911.peg.299 CDS AEJQ02000007.1 49351 47852 -1 - 1500 ATPase component BioM of energizing module of biotin ECF transporter Biotin biosynthesis;
Biotin synthesis cluster;
ECF class transporters
fig|6666666.229911.peg.300 CDS AEJQ02000007.1 49477 50145 1 + 669 Uncharacterized protein conserved in bacteria - none -
fig|6666666.229911.peg.301 CDS AEJQ02000007.1 50148 50621 3 + 474 UPF0225 protein YchJ Broadly distributed proteins not in subsystems
fig|6666666.229911.peg.302 CDS AEJQ02000007.1 50618 51448 2 + 831 Ribonuclease BN (EC 3.1.-.-) - none -
fig|6666666.229911.peg.303 CDS AEJQ02000007.1 51445 51879 1 + 435 D-tyrosyl-tRNA(Tyr) deacylase (EC 3.6.1.n1) - none -
fig|6666666.229911.peg.304 CDS AEJQ02000007.1 52045 53253 1 + 1209 Sodium/glutamate symport protein - none -
fig|6666666.229911.peg.305 CDS AEJQ02000007.1 54697 53309 -1 - 1389 Copper sensory histidine kinase CpxA Orphan regulatory proteins
fig|6666666.229911.peg.306 CDS AEJQ02000007.1 55437 54742 -3 - 696 Copper-sensing two-component system response regulator CpxR Orphan regulatory proteins
fig|6666666.229911.peg.307 CDS AEJQ02000007.1 55892 55479 -2 - 414 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex Lipopolysaccharide assembly
fig|6666666.229911.peg.308 CDS AEJQ02000007.1 56983 55958 -1 - 1026 Nucleoid-associated protein NdpA CBSS-211586.1.peg.1979
fig|6666666.229911.peg.309 CDS AEJQ02000007.1 57110 57334 2 + 225 FIG002927: hypothetical protein CBSS-211586.1.peg.1979
fig|6666666.229911.peg.310 CDS AEJQ02000007.1 57339 59078 3 + 1740 FIG001881: hydrolase of alkaline phosphatase superfamily CBSS-211586.1.peg.1979
fig|6666666.229911.peg.311 CDS AEJQ02000007.1 59337 60326 3 + 990 Cytosine deaminase (EC 3.5.4.1) CBSS-326442.4.peg.1852;
Creatine and Creatinine Degradation;
pyrimidine conversions
fig|6666666.229911.peg.312 CDS AEJQ02000007.1 61290 60424 -3 - 867 Nucleoside triphosphate pyrophosphohydrolase MazG (EC 3.6.1.8) Nucleoside triphosphate pyrophosphohydrolase MazG
fig|6666666.229911.peg.313 CDS AEJQ02000007.1 61400 61825 2 + 426 Universal stress protein A Universal stress protein family
fig|6666666.229911.peg.314 CDS AEJQ02000007.1 62025 64649 3 + 2625 Alanyl-tRNA synthetase (EC 6.1.1.7) Cluster containing Alanyl-tRNA synthetase;
tRNA aminoacylation, Ala
fig|6666666.229911.peg.315 CDS AEJQ02000007.1 64772 64954 2 + 183 Carbon storage regulator Carbon Starvation;
Carbon storage regulator
fig|6666666.229911.peg.316 CDS AEJQ02000007.1 64986 66350 3 + 1365 Phosphomannomutase (EC 5.4.2.8) Mannose Metabolism
fig|6666666.229911.peg.317 CDS AEJQ02000007.1 66426 67313 3 + 888 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) - none -
fig|6666666.229911.peg.318 CDS AEJQ02000007.1 67468 67785 1 + 318 Methionine repressor MetJ Methionine Biosynthesis
fig|6666666.229911.peg.319 CDS AEJQ02000007.1 67873 67742 -1 - 132 hypothetical protein - none -
fig|6666666.229911.peg.320 CDS AEJQ02000007.1 67971 68606 3 + 636 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) Cluster containing Glutathione synthetase;
Heat shock dnaK gene cluster extended;
RNA methylation
fig|6666666.229911.peg.321 CDS AEJQ02000007.1 68623 69180 1 + 558 UPF0301 protein YqgE Cluster containing Glutathione synthetase
fig|6666666.229911.peg.322 CDS AEJQ02000007.1 69180 69599 3 + 420 Putative Holliday junction resolvase YggF Cluster containing Alanyl-tRNA synthetase;
Cluster containing Glutathione synthetase
fig|6666666.229911.peg.323 CDS AEJQ02000007.1 71005 69695 -1 - 1311 Enolase (EC 4.2.1.11) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis;
Serine-glyoxylate cycle
fig|6666666.229911.peg.324 CDS AEJQ02000007.1 71190 71074 -3 - 117 hypothetical protein - none -
fig|6666666.229911.peg.325 CDS AEJQ02000007.1 72794 71643 -2 - 1152 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) CBSS-354.1.peg.876;
RNA methylation;
Riboflavin, FMN and FAD metabolism in plants;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229911.peg.326 CDS AEJQ02000007.1 73312 73055 -1 - 258 Probable exported or periplasmic protein in ApbE locus Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229911.peg.327 CDS AEJQ02000007.1 74479 73391 -1 - 1089 Thiamin biosynthesis lipoprotein ApbE - none -
fig|6666666.229911.peg.328 CDS AEJQ02000007.1 74646 74476 -3 - 171 hypothetical protein - none -
fig|6666666.229911.peg.329 CDS AEJQ02000007.1 75865 74630 -1 - 1236 Na(+)-translocating NADH-quinone reductase subunit F (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229911.peg.330 CDS AEJQ02000007.1 76473 75877 -3 - 597 Na(+)-translocating NADH-quinone reductase subunit E (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229911.peg.331 CDS AEJQ02000007.1 77106 76477 -3 - 630 Na(+)-translocating NADH-quinone reductase subunit D (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229911.peg.332 CDS AEJQ02000007.1 77891 77106 -2 - 786 Na(+)-translocating NADH-quinone reductase subunit C (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229911.peg.333 CDS AEJQ02000007.1 79119 77884 -3 - 1236 Na(+)-translocating NADH-quinone reductase subunit B (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229911.peg.334 CDS AEJQ02000007.1 80462 79122 -2 - 1341 Na(+)-translocating NADH-quinone reductase subunit A (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229911.peg.335 CDS AEJQ02000007.1 80544 80681 3 + 138 hypothetical protein - none -
fig|6666666.229911.peg.336 CDS AEJQ02000007.1 80808 80692 -3 - 117 hypothetical protein - none -
fig|6666666.229911.peg.337 CDS AEJQ02000007.1 81129 80818 -3 - 312 Cell division protein BolA Bacterial Cell Division;
CBSS-339671.5.peg.589
fig|6666666.229911.peg.338 CDS AEJQ02000007.1 81233 81826 2 + 594 Hypothetical lipoprotein YajG precursor CBSS-339671.5.peg.589
fig|6666666.229911.peg.339 CDS AEJQ02000007.1 81932 81807 -2 - 126 hypothetical protein - none -
fig|6666666.229911.peg.340 CDS AEJQ02000007.1 83406 82327 -3 - 1080 Membrane-bound lytic murein transglycosylase C precursor (EC 3.2.1.-) Murein Hydrolases
fig|6666666.229911.peg.341 CDS AEJQ02000007.1 83687 83409 -2 - 279 FIG001341: Probable Fe(2+)-trafficking protein YggX Heat shock dnaK gene cluster extended
fig|6666666.229911.peg.342 CDS AEJQ02000007.1 84855 83665 -3 - 1191 A/G-specific adenine glycosylase (EC 3.2.2.-) DNA repair, bacterial
fig|6666666.229911.peg.343 CDS AEJQ02000007.1 85021 85788 1 + 768 tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33) CBSS-83333.1.peg.2911;
RNA methylation;
tRNA modification Bacteria
fig|6666666.229911.peg.344 CDS AEJQ02000007.1 85819 86160 1 + 342 FIG002060: uncharacterized protein YggL CBSS-83333.1.peg.2911
fig|6666666.229911.peg.345 CDS AEJQ02000007.1 86379 87377 3 + 999 Ferric iron ABC transporter, iron-binding protein Iron acquisition in Streptococcus
fig|6666666.229911.peg.346 CDS AEJQ02000007.1 87458 88978 2 + 1521 Ferric iron ABC transporter, permease protein Iron acquisition in Streptococcus
fig|6666666.229911.peg.347 CDS AEJQ02000007.1 88994 90052 2 + 1059 Ferric iron ABC transporter, ATP-binding protein Iron acquisition in Streptococcus
fig|6666666.229911.peg.348 CDS AEJQ02000007.1 90378 90073 -3 - 306 tRNA-dihydrouridine synthase C (EC 1.-.-.-) Murein hydrolase regulation and cell death;
tRNA modification Bacteria
fig|6666666.229911.peg.349 CDS AEJQ02000007.1 90812 90378 -2 - 435 tRNA-dihydrouridine synthase C (EC 1.-.-.-) Murein hydrolase regulation and cell death;
tRNA modification Bacteria
fig|6666666.229911.peg.350 CDS AEJQ02000007.1 91040 90816 -2 - 225 tRNA-dihydrouridine synthase C (EC 1.-.-.-) Murein hydrolase regulation and cell death;
tRNA modification Bacteria
fig|6666666.229911.peg.351 CDS AEJQ02000007.1 91919 91044 -2 - 876 DnaJ-like protein DjlA - none -
fig|6666666.229911.peg.352 CDS AEJQ02000007.1 92645 92001 -2 - 645 Orotate phosphoribosyltransferase (EC 2.4.2.10) De Novo Pyrimidine Synthesis
fig|6666666.229911.peg.353 CDS AEJQ02000007.1 93371 92655 -2 - 717 Ribonuclease PH (EC 2.7.7.56) Heat shock dnaK gene cluster extended;
tRNA processing
fig|6666666.229911.peg.354 CDS AEJQ02000007.1 93489 94352 3 + 864 Protein YicC CBSS-323097.3.peg.2594
fig|6666666.229911.peg.355 CDS AEJQ02000007.1 94380 95267 3 + 888 Folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress - none -
fig|6666666.229911.peg.356 CDS AEJQ02000007.1 95386 95775 1 + 390 Patatin-like phospholipase - none -
fig|6666666.229911.peg.357 CDS AEJQ02000007.1 95850 96572 3 + 723 SSU ribosomal protein S2p (SAe) CBSS-312309.3.peg.1965;
Ribosome SSU bacterial;
Ribosome recycling related cluster
fig|6666666.229911.peg.358 CDS AEJQ02000007.1 96727 97575 1 + 849 Translation elongation factor Ts CBSS-312309.3.peg.1965;
Ribosome recycling related cluster
fig|6666666.229911.peg.359 CDS AEJQ02000007.1 97872 98558 3 + 687 DNA recombination and repair protein RecO CBSS-176299.4.peg.1292;
DNA repair, bacterial RecFOR pathway;
Glycyl-tRNA synthetase containing cluster
fig|6666666.229911.peg.360 CDS AEJQ02000007.1 98560 99876 1 + 1317 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) RNA methylation
fig|6666666.229911.peg.361 CDS AEJQ02000007.1 99886 102117 1 + 2232 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I CBSS-176299.4.peg.1292;
Stringent Response, (p)ppGpp metabolism
fig|6666666.229911.peg.362 CDS AEJQ02000007.1 102142 102498 1 + 357 Diacylglycerol kinase (EC 2.7.1.107) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Riboflavin synthesis cluster
fig|6666666.229911.peg.363 CDS AEJQ02000008.1 337 954 1 + 618 FIG00698503: hypothetical protein - none -
fig|6666666.229911.peg.364 CDS AEJQ02000009.1 117 452 3 + 336 FIG00698722: hypothetical protein - none -
fig|6666666.229911.peg.365 CDS AEJQ02000009.1 473 595 2 + 123 hypothetical protein - none -
fig|6666666.229911.peg.366 CDS AEJQ02000010.1 961 134 -1 - 828 Glutamate racemase (EC 5.1.1.3) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Peptidoglycan Biosynthesis
fig|6666666.229911.peg.367 CDS AEJQ02000010.1 1489 992 -1 - 498 Chorismate--pyruvate lyase (EC 4.1.3.40) Ubiquinone Biosynthesis
fig|6666666.229911.peg.368 CDS AEJQ02000010.1 3563 1482 -2 - 2082 ATP-dependent DNA helicase RecG (EC 3.6.1.-) - none -
fig|6666666.229911.peg.369 CDS AEJQ02000010.1 5687 3564 -2 - 2124 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II / Guanosine-3@1,5@1-bis(diphosphate) 3@1-pyrophosphohydrolase (EC 3.1.7.2) CBSS-176299.4.peg.1292;
CBSS-176299.4.peg.1292;
Stringent Response, (p)ppGpp metabolism;
Stringent Response, (p)ppGpp metabolism
fig|6666666.229911.peg.370 CDS AEJQ02000010.1 5999 5733 -2 - 267 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) CBSS-176299.4.peg.1292;
RNA polymerase bacterial
fig|6666666.229911.peg.371 CDS AEJQ02000010.1 6695 6057 -2 - 639 Guanylate kinase (EC 2.7.4.8) CBSS-323097.3.peg.2594;
Purine conversions
fig|6666666.229911.peg.372 CDS AEJQ02000010.1 6708 6857 3 + 150 hypothetical protein - none -
fig|6666666.229911.peg.373 CDS AEJQ02000010.1 6937 7941 1 + 1005 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis;
Pyridoxin (Vitamin B6) Biosynthesis
fig|6666666.229911.peg.374 CDS AEJQ02000010.1 8451 8035 -3 - 417 conserved hypothetical protein; possible membrane protein - none -
fig|6666666.229911.peg.375 CDS AEJQ02000010.1 8572 8910 1 + 339 Putative oligoketide cyclase/lipid transport protein, similarity with yeast ubiquinone-binding protein YOL008W - none -
fig|6666666.229911.peg.376 CDS AEJQ02000010.1 8944 9237 1 + 294 UPF0125 protein yfjF - none -
fig|6666666.229911.peg.377 CDS AEJQ02000010.1 9270 10463 3 + 1194 FIG074102: hypothetical protein - none -
fig|6666666.229911.peg.378 CDS AEJQ02000010.1 10470 11795 3 + 1326 Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) DNA repair, bacterial;
Purine salvage cluster
fig|6666666.229911.peg.379 CDS AEJQ02000010.1 12664 11810 -1 - 855 FIG000506: Predicted P-loop-containing kinase - none -
fig|6666666.229911.peg.380 CDS AEJQ02000010.1 13213 12692 -1 - 522 PTS IIA-like nitrogen-regulatory protein PtsN - none -
fig|6666666.229911.peg.381 CDS AEJQ02000010.1 13942 13217 -1 - 726 Lipopolysaccharide ABC transporter, ATP-binding protein LptB KDO2-Lipid A biosynthesis;
Lipopolysaccharide assembly
fig|6666666.229911.peg.382 CDS AEJQ02000010.1 14466 13948 -3 - 519 LptA, protein essential for LPS transport across the periplasm KDO2-Lipid A biosynthesis;
Lipopolysaccharide assembly
fig|6666666.229911.peg.383 CDS AEJQ02000010.1 15022 14447 -1 - 576 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters Lipopolysaccharide assembly
fig|6666666.229911.peg.384 CDS AEJQ02000010.1 15306 16103 3 + 798 Uncharacterized ABC transporter, ATP-binding protein YrbF CBSS-12149.1.peg.3301;
Lipopolysaccharide assembly
fig|6666666.229911.peg.385 CDS AEJQ02000010.1 16097 16882 2 + 786 Uncharacterized ABC transporter, permease component YrbE CBSS-12149.1.peg.3301;
Lipopolysaccharide assembly
fig|6666666.229911.peg.386 CDS AEJQ02000010.1 16905 17414 3 + 510 Uncharacterized ABC transporter, periplasmic component YrbD CBSS-12149.1.peg.3301;
Lipopolysaccharide assembly
fig|6666666.229911.peg.387 CDS AEJQ02000010.1 17443 18084 1 + 642 Uncharacterized ABC transporter, auxiliary component YrbC CBSS-12149.1.peg.3301;
Lipopolysaccharide assembly
fig|6666666.229911.peg.388 CDS AEJQ02000010.1 18178 18447 1 + 270 Uncharacterized protein YrbB CBSS-12149.1.peg.3301
fig|6666666.229911.peg.389 CDS AEJQ02000010.1 18447 18704 3 + 258 YrbA protein Broadly distributed proteins not in subsystems;
CBSS-12149.1.peg.3301
fig|6666666.229911.peg.390 CDS AEJQ02000010.1 18721 19992 1 + 1272 UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7) CBSS-12149.1.peg.3301;
Peptidoglycan Biosynthesis;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229911.peg.391 CDS AEJQ02000010.1 20743 21690 1 + 948 Putative secretion ATPase - none -
fig|6666666.229911.peg.392 CDS AEJQ02000010.1 23100 22036 -3 - 1065 glycosyl transferase, family 2 - none -
fig|6666666.229911.peg.393 CDS AEJQ02000010.1 23892 23602 -3 - 291 FIG00696346: hypothetical protein - none -
fig|6666666.229911.peg.394 CDS AEJQ02000010.1 24095 25525 2 + 1431 Long-chain fatty acid transport protein - none -
fig|6666666.229911.peg.395 CDS AEJQ02000010.1 25602 26141 3 + 540 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) DNA repair, bacterial
fig|6666666.229911.peg.396 CDS AEJQ02000010.1 26138 26806 2 + 669 DNA mismatch repair endonuclease MutH DNA repair, bacterial
fig|6666666.229911.peg.397 CDS AEJQ02000010.1 26871 27596 3 + 726 Integral membrane protein TerC - none -
fig|6666666.229911.peg.398 CDS AEJQ02000011.1 1509 508 -3 - 1002 Integral inner membrane protein of type IV secretion complex (VirB6) - none -
fig|6666666.229911.peg.399 CDS AEJQ02000011.1 1745 1521 -2 - 225 hypothetical protein - none -
fig|6666666.229911.peg.400 CDS AEJQ02000011.1 2093 1767 -2 - 327 hypothetical protein - none -
fig|6666666.229911.peg.401 CDS AEJQ02000011.1 2542 2213 -1 - 330 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes - none -
fig|6666666.229911.peg.402 CDS AEJQ02000011.1 2896 3015 1 + 120 Haemophilus-specific protein, uncharacterized - none -
fig|6666666.229911.peg.403 CDS AEJQ02000011.1 3329 3508 2 + 180 hypothetical protein - none -
fig|6666666.229911.peg.404 CDS AEJQ02000011.1 4336 4680 1 + 345 Programmed cell death toxin MazF - none -
fig|6666666.229911.peg.405 CDS AEJQ02000011.1 5249 5917 2 + 669 Cytolethal distending toxin subunit A Cytolethal distending toxin of Campylobacter jejuni;
Cytolethal distending toxins
fig|6666666.229911.peg.406 CDS AEJQ02000011.1 5932 6783 1 + 852 Cytolethal distending toxin subunit B Cytolethal distending toxin of Campylobacter jejuni;
Cytolethal distending toxins
fig|6666666.229911.peg.407 CDS AEJQ02000011.1 6794 7354 2 + 561 Cytolethal distending toxin subunit C Cytolethal distending toxin of Campylobacter jejuni;
Cytolethal distending toxins
fig|6666666.229911.peg.408 CDS AEJQ02000011.1 9151 8879 -1 - 273 FIG141751: hypothetical protein in PFGI-1-like cluster - none -
fig|6666666.229911.peg.409 CDS AEJQ02000011.1 9941 9165 -2 - 777 Chromosome partitioning ATPase in PFGI-1-like cluster, ParA-like - none -
fig|6666666.229911.peg.410 CDS AEJQ02000011.1 11025 10468 -3 - 558 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229911.peg.411 CDS AEJQ02000011.1 11280 12470 3 + 1191 Cystathionine beta-lyase (EC 4.4.1.8) Methionine Biosynthesis
fig|6666666.229911.peg.412 CDS AEJQ02000011.1 12684 13736 3 + 1053 Outer membrane protein P2 precursor (OMP P2) - none -
fig|6666666.229911.peg.413 CDS AEJQ02000011.1 13880 14137 2 + 258 hypothetical protein - none -
fig|6666666.229911.peg.414 CDS AEJQ02000011.1 14137 14484 1 + 348 Programmed cell death toxin ChpB - none -
fig|6666666.229911.peg.415 CDS AEJQ02000011.1 15689 14562 -2 - 1128 Chaperone protein DnaJ GroEL GroES;
Heat shock dnaK gene cluster extended;
Protein chaperones
fig|6666666.229911.peg.416 CDS AEJQ02000011.1 18026 16125 -2 - 1902 Chaperone protein DnaK GroEL GroES;
Heat shock dnaK gene cluster extended;
Protein chaperones
fig|6666666.229911.peg.417 CDS AEJQ02000011.1 18312 19745 3 + 1434 Putative GTP-binding protein YdgA - none -
fig|6666666.229911.peg.418 CDS AEJQ02000011.1 21838 20105 -1 - 1734 Arginyl-tRNA synthetase (EC 6.1.1.19) tRNA aminoacylation, Arg
fig|6666666.229911.peg.419 CDS AEJQ02000011.1 21935 22522 2 + 588 Protein yecM - none -
fig|6666666.229911.peg.420 CDS AEJQ02000011.1 22564 23019 1 + 456 Outer membrane lipoprotein - none -
fig|6666666.229911.peg.421 CDS AEJQ02000011.1 23159 24241 2 + 1083 Peptide chain release factor 1 A Gammaproteobacteria Cluster Relating to Translation;
CBSS-216600.3.peg.802;
Translation termination factors bacterial
fig|6666666.229911.peg.422 CDS AEJQ02000011.1 24281 25180 2 + 900 Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2 A Gammaproteobacteria Cluster Relating to Translation;
CBSS-216600.3.peg.802;
Translation termination factors bacterial
fig|6666666.229911.peg.423 CDS AEJQ02000011.1 25190 26044 2 + 855 2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase (EC 2.5.1.55) A Gammaproteobacteria Cluster Relating to Translation;
KDO2-Lipid A biosynthesis
fig|6666666.229911.peg.424 CDS AEJQ02000011.1 26224 26733 1 + 510 probable lipoprotein NlpC - none -
fig|6666666.229911.peg.425 CDS AEJQ02000011.1 27381 27130 -3 - 252 Protein YcgL CBSS-243277.1.peg.4359
fig|6666666.229911.peg.426 CDS AEJQ02000011.1 27465 28127 3 + 663 Septum site-determining protein MinC Bacterial Cell Division;
Bacterial Cytoskeleton;
Septum site-determining cluster Min
fig|6666666.229911.peg.427 CDS AEJQ02000011.1 28694 28149 -2 - 546 FIG00696317: hypothetical protein - none -
fig|6666666.229911.peg.428 CDS AEJQ02000011.1 29385 28918 -3 - 468 Phosphohistidine phosphatase SixA - none -
fig|6666666.229911.peg.429 CDS AEJQ02000011.1 30735 29398 -3 - 1338 Phosphoglucosamine mutase (EC 5.4.2.10) Sialic Acid Metabolism;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229911.peg.430 CDS AEJQ02000011.1 31540 30764 -1 - 777 Dihydropteroate synthase (EC 2.5.1.15) Folate Biosynthesis;
Folate biosynthesis cluster
fig|6666666.229911.peg.431 CDS AEJQ02000011.1 32702 31761 -2 - 942 DNA polymerase IV (EC 2.7.7.7) DNA repair, bacterial
fig|6666666.229911.peg.432 CDS AEJQ02000011.1 33370 32726 -1 - 645 Mobile element protein - none -
fig|6666666.229911.peg.433 CDS AEJQ02000011.1 33579 33872 3 + 294 hypothetical protein - none -
fig|6666666.229911.peg.434 CDS AEJQ02000011.1 33874 34611 1 + 738 Zeta toxin - none -
fig|6666666.229911.peg.435 CDS AEJQ02000011.1 35394 35648 3 + 255 Mobile element protein - none -
fig|6666666.229911.peg.436 CDS AEJQ02000011.1 37320 35854 -3 - 1467 Inosine-5@1-monophosphate dehydrogenase (EC 1.1.1.205) Purine conversions;
Purine salvage cluster
fig|6666666.229911.peg.437 CDS AEJQ02000011.1 37462 38394 1 + 933 Biotin operon repressor / Biotin-protein ligase (EC 6.3.4.15) Biotin biosynthesis;
Biotin biosynthesis;
Biotin synthesis cluster;
Biotin synthesis cluster
fig|6666666.229911.peg.438 CDS AEJQ02000012.1 1196 1321 2 + 126 hypothetical protein - none -
fig|6666666.229911.peg.439 CDS AEJQ02000012.1 1468 1995 1 + 528 DNA transformation protein TfoX CBSS-83333.1.peg.946;
Orphan regulatory proteins
fig|6666666.229911.peg.440 CDS AEJQ02000012.1 2910 2062 -3 - 849 RNA polymerase sigma factor RpoH Heat shock dnaK gene cluster extended;
Transcription initiation, bacterial sigma factors
fig|6666666.229911.peg.441 CDS AEJQ02000012.1 3409 3095 -1 - 315 Uncharacterized protein conserved in bacteria - none -
fig|6666666.229911.peg.442 CDS AEJQ02000012.1 4450 3425 -1 - 1026 UDP-N-acetylenolpyruvoylglucosamine reductase (EC 1.1.1.158) Peptidoglycan Biosynthesis;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229911.peg.443 CDS AEJQ02000012.1 6168 4465 -3 - 1704 Nitrate/nitrite sensor protein (EC 2.7.3.-) - none -
fig|6666666.229911.peg.444 CDS AEJQ02000012.1 6214 6378 1 + 165 hypothetical protein - none -
fig|6666666.229911.peg.445 CDS AEJQ02000012.1 6444 6728 3 + 285 Periplasmic nitrate reductase component NapD - none -
fig|6666666.229911.peg.446 CDS AEJQ02000012.1 6762 9248 3 + 2487 Periplasmic nitrate reductase precursor (EC 1.7.99.4) - none -
fig|6666666.229911.peg.447 CDS AEJQ02000012.1 9296 10135 2 + 840 Ferredoxin-type protein NapG (periplasmic nitrate reductase) - none -
fig|6666666.229911.peg.448 CDS AEJQ02000012.1 10135 11016 1 + 882 Polyferredoxin NapH (periplasmic nitrate reductase) - none -
fig|6666666.229911.peg.449 CDS AEJQ02000012.1 11054 11503 2 + 450 Nitrate reductase cytochrome c550-type subunit - none -
fig|6666666.229911.peg.450 CDS AEJQ02000012.1 11517 12152 3 + 636 Cytochrome c-type protein NapC - none -
fig|6666666.229911.peg.451 CDS AEJQ02000012.1 14133 12238 -3 - 1896 Glutathionylspermidine synthase (EC 6.3.1.8) / Glutathionylspermidine amidohydrolase (EC 3.5.1.78) Glutathionylspermidine and Trypanothione;
Glutathionylspermidine and Trypanothione
fig|6666666.229911.peg.452 CDS AEJQ02000012.1 15294 14251 -3 - 1044 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) LOS core oligosaccharide biosynthesis
fig|6666666.229911.peg.453 CDS AEJQ02000012.1 16441 15314 -1 - 1128 Fic family protein - none -
fig|6666666.229911.peg.454 CDS AEJQ02000012.1 17537 16611 -2 - 927 ADP-L-glycero-D-manno-heptose-6-epimerase (EC 5.1.3.20) LOS core oligosaccharide biosynthesis
fig|6666666.229911.peg.455 CDS AEJQ02000012.1 17559 17678 3 + 120 hypothetical protein - none -
fig|6666666.229911.peg.456 CDS AEJQ02000012.1 17816 18592 2 + 777 Protein HI0205 precursor - none -
fig|6666666.229911.peg.457 CDS AEJQ02000012.1 18619 20433 1 + 1815 5@1-nucleotidase (EC 3.1.3.5); NAD pyrophosphatase, periplasmic (EC 3.6.1.22) Purine conversions;
pyrimidine conversions
fig|6666666.229911.peg.458 CDS AEJQ02000012.1 20886 20539 -3 - 348 hypothetical protein - none -
fig|6666666.229911.peg.459 CDS AEJQ02000012.1 21258 21136 -3 - 123 hypothetical protein - none -
fig|6666666.229911.peg.460 CDS AEJQ02000012.1 24074 21273 -2 - 2802 DNA polymerase I (EC 2.7.7.7) DNA Repair Base Excision
fig|6666666.229911.peg.461 CDS AEJQ02000012.1 24291 24854 3 + 564 Outer membrane protein 18/16 - none -
fig|6666666.229911.peg.462 CDS AEJQ02000012.1 24958 25188 1 + 231 FIG00696102: hypothetical protein - none -
fig|6666666.229911.peg.463 CDS AEJQ02000012.1 25198 27213 1 + 2016 ATP-dependent DNA helicase Rep DNA repair, bacterial UvrD and related helicases
fig|6666666.229911.peg.464 CDS AEJQ02000012.1 28112 27732 -2 - 381 FIG00782409: hypothetical protein - none -
fig|6666666.229911.peg.465 CDS AEJQ02000012.1 28241 28843 2 + 603 Putative phosphatase YqaB 2-phosphoglycolate salvage
fig|6666666.229911.peg.466 CDS AEJQ02000012.1 28843 29448 1 + 606 Galactoside O-acetyltransferase (EC 2.3.1.18) Lactose utilization
fig|6666666.229911.peg.467 CDS AEJQ02000012.1 29451 29936 3 + 486 Putative membrane protein - none -
fig|6666666.229911.peg.468 CDS AEJQ02000012.1 30150 30656 3 + 507 S-ribosylhomocysteine lyase (EC 4.4.1.21) / Autoinducer-2 production protein LuxS Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon);
Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229911.peg.469 CDS AEJQ02000012.1 30826 30978 1 + 153 hypothetical protein - none -
fig|6666666.229911.peg.470 CDS AEJQ02000012.1 31634 30975 -2 - 660 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses;
Ribosome biogenesis bacterial;
tRNA modification Bacteria
fig|6666666.229911.peg.471 CDS AEJQ02000012.1 32015 32704 2 + 690 Ribosyl nicotinamide transporter, PnuC-like NAD and NADP cofactor biosynthesis global
fig|6666666.229911.peg.472 CDS AEJQ02000012.1 33477 32779 -3 - 699 tRNA (adenine37-N(6))-methyltransferase TrmN6 (EC 2.1.1.223) RNA methylation
fig|6666666.229911.peg.473 CDS AEJQ02000012.1 33589 33461 -1 - 129 hypothetical protein - none -
fig|6666666.229911.peg.474 CDS AEJQ02000012.1 33576 34907 3 + 1332 ATP-dependent RNA helicase SrmB - none -
fig|6666666.229911.peg.475 CDS AEJQ02000012.1 35378 36679 2 + 1302 Predicted ATPase (AAA+ superfamily) - none -
fig|6666666.229911.peg.476 CDS AEJQ02000012.1 36738 38138 3 + 1401 USG protein - none -
fig|6666666.229911.peg.477 CDS AEJQ02000012.1 38651 39295 2 + 645 hypothetical protein - none -
fig|6666666.229911.peg.478 CDS AEJQ02000012.1 40015 39383 -1 - 633 Pyridoxamine 5@1-phosphate oxidase (EC 1.4.3.5) Pyridoxin (Vitamin B6) Biosynthesis
fig|6666666.229911.peg.479 CDS AEJQ02000012.1 40186 41511 1 + 1326 Hexose phosphate uptake regulatory protein UhpC - none -
fig|6666666.229911.peg.480 CDS AEJQ02000012.1 41526 41666 3 + 141 hypothetical protein - none -
fig|6666666.229911.peg.481 CDS AEJQ02000012.1 41922 41629 -3 - 294 AagD - none -
fig|6666666.229911.peg.482 CDS AEJQ02000012.1 43160 41925 -2 - 1236 Biofilm PGA synthesis N-glycosyltransferase PgaC (EC 2.4.-.-) Biofilm Adhesin Biosynthesis
fig|6666666.229911.peg.483 CDS AEJQ02000012.1 45085 43169 -1 - 1917 Biofilm PGA synthesis deacetylase PgaB (EC 3.-) Biofilm Adhesin Biosynthesis
fig|6666666.229911.peg.484 CDS AEJQ02000012.1 47488 45101 -1 - 2388 Biofilm PGA outer membrane secretin PgaA Biofilm Adhesin Biosynthesis
fig|6666666.229911.peg.485 CDS AEJQ02000012.1 47773 47630 -1 - 144 hypothetical protein - none -
fig|6666666.229911.peg.486 CDS AEJQ02000012.1 49885 48635 -1 - 1251 Nucleoside permease NupC - none -
fig|6666666.229911.peg.487 CDS AEJQ02000012.1 51352 50177 -1 - 1176 Cof protein - none -
fig|6666666.229911.peg.488 CDS AEJQ02000012.1 52298 51462 -2 - 837 PTS system, mannose-specific IID component (EC 2.7.1.69) Mannose Metabolism;
Sialic Acid Metabolism
fig|6666666.229911.peg.489 CDS AEJQ02000012.1 53109 52312 -3 - 798 PTS system, mannose-specific IIC component - none -
fig|6666666.229911.peg.490 CDS AEJQ02000012.1 54092 53127 -2 - 966 PTS system, mannose-specific IIA component (EC 2.7.1.69) / PTS system, mannose-specific IIB component (EC 2.7.1.69) Mannose Metabolism;
Mannose Metabolism;
Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229911.peg.491 CDS AEJQ02000012.1 54963 54379 -3 - 585 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) CBSS-266117.6.peg.1260;
CBSS-269801.1.peg.1715;
RNA methylation
fig|6666666.229911.peg.492 CDS AEJQ02000012.1 55051 56412 1 + 1362 Signal recognition particle receptor protein FtsY (=alpha subunit) (TC 3.A.5.1.1) Bacterial Cell Division;
Bacterial signal recognition particle (SRP)
fig|6666666.229911.peg.493 CDS AEJQ02000012.1 56587 57591 1 + 1005 Tryptophanyl-tRNA synthetase (EC 6.1.1.2) tRNA aminoacylation, Trp
fig|6666666.229911.peg.494 CDS AEJQ02000012.1 58322 57678 -2 - 645 3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster;
riboflavin to FAD
fig|6666666.229911.peg.495 CDS AEJQ02000012.1 59775 59002 -3 - 774 Zn-dependent protease with chaperone function - none -
fig|6666666.229911.peg.496 CDS AEJQ02000012.1 60378 59851 -3 - 528 Inorganic pyrophosphatase (EC 3.6.1.1) Phosphate metabolism
fig|6666666.229911.peg.497 CDS AEJQ02000012.1 60540 61784 3 + 1245 Tryptophan-specific transport protein - none -
fig|6666666.229911.peg.498 CDS AEJQ02000012.1 62063 62380 2 + 318 hypothetical protein - none -
fig|6666666.229911.peg.499 CDS AEJQ02000012.1 63469 62762 -1 - 708 NMN phosphatase (EC 3.1.3.5); Class B acid phosphatase precursor (EC 3.1.3.2) NAD and NADP cofactor biosynthesis global
fig|6666666.229911.peg.500 CDS AEJQ02000012.1 63684 64211 3 + 528 ATP-dependent protease HslV (EC 3.4.25.-) Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229911.peg.501 CDS AEJQ02000012.1 64232 65563 2 + 1332 ATP-dependent hsl protease ATP-binding subunit HslU Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229911.peg.502 CDS AEJQ02000012.1 65629 67212 1 + 1584 Nickel ABC transporter, periplasmic nickel-binding protein NikA (TC 3.A.1.5.3) Transport of Nickel and Cobalt
fig|6666666.229911.peg.503 CDS AEJQ02000012.1 67278 68054 3 + 777 Nucleoside ABC transporter, periplasmic nucleoside-binding protein - none -
fig|6666666.229911.peg.504 CDS AEJQ02000012.1 68072 68566 2 + 495 Protein yfbU - none -
fig|6666666.229911.peg.505 CDS AEJQ02000012.1 69334 68651 -1 - 684 Phosphoglycerate mutase (EC 5.4.2.1) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis;
Phosphoglycerate mutase protein family
fig|6666666.229911.peg.506 CDS AEJQ02000012.1 69640 71298 1 + 1659 Phosphoglucosamine mutase (EC 5.4.2.10) Sialic Acid Metabolism;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229911.peg.507 CDS AEJQ02000012.1 71549 72766 2 + 1218 Periplasmic septal ring factor with murein hydrolase activity EnvC/YibP CBSS-224911.1.peg.435;
Glutaredoxins;
Phosphoglycerate mutase protein family
fig|6666666.229911.peg.508 CDS AEJQ02000012.1 72763 73590 1 + 828 Putative periplasmic protein YibQ, distant homology with nucleoside diphosphatase and polysaccharide deacetylase CBSS-224911.1.peg.435;
Phosphoglycerate mutase protein family
fig|6666666.229911.peg.509 CDS AEJQ02000012.1 74306 73602 -2 - 705 MG(2+) CHELATASE FAMILY PROTEIN / ComM-related protein CBSS-203122.12.peg.188;
CBSS-203122.12.peg.188
fig|6666666.229911.peg.510 CDS AEJQ02000012.1 74442 75104 3 + 663 FIGfam050825 CBSS-203122.12.peg.188
fig|6666666.229911.peg.511 CDS AEJQ02000012.1 75097 77016 1 + 1920 TniA putative transposase CBSS-203122.12.peg.188
fig|6666666.229911.peg.512 CDS AEJQ02000012.1 77016 77909 3 + 894 TniB NTP-binding protein CBSS-203122.12.peg.188
fig|6666666.229911.peg.513 CDS AEJQ02000012.1 77867 78985 2 + 1119 Mll9366 protein CBSS-203122.12.peg.188
fig|6666666.229911.peg.514 CDS AEJQ02000012.1 78982 80397 1 + 1416 FIGfam110555 CBSS-203122.12.peg.188
fig|6666666.229911.peg.515 CDS AEJQ02000012.1 81225 82286 3 + 1062 Recombinase - none -
fig|6666666.229911.peg.516 CDS AEJQ02000012.1 82746 83594 3 + 849 Chromosome (plasmid) partitioning protein ParB Bacterial Cytoskeleton;
Cell Division Subsystem including YidCD;
RNA modification and chromosome partitioning cluster
fig|6666666.229911.peg.517 CDS AEJQ02000012.1 83629 84441 1 + 813 Bll0873 protein - none -
fig|6666666.229911.peg.518 CDS AEJQ02000012.1 85778 85263 -2 - 516 hypothetical protein - none -
fig|6666666.229911.peg.519 CDS AEJQ02000012.1 91757 85782 -2 - 5976 VgrG protein - none -
fig|6666666.229911.peg.520 CDS AEJQ02000012.1 92029 92688 1 + 660 Methyltransferase - none -
fig|6666666.229911.peg.521 CDS AEJQ02000012.1 92704 93531 1 + 828 Thermostable 8-oxoguanine DNA glycosylase - none -
fig|6666666.229911.peg.522 CDS AEJQ02000012.1 96015 94768 -3 - 1248 Ribokinase (EC 2.7.1.15) D-ribose utilization;
Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.229911.peg.523 CDS AEJQ02000012.1 98351 96603 -2 - 1749 hypothetical protein - none -
fig|6666666.229911.peg.524 CDS AEJQ02000012.1 99319 98453 -1 - 867 MG(2+) CHELATASE FAMILY PROTEIN CBSS-203122.12.peg.188
fig|6666666.229911.peg.525 CDS AEJQ02000012.1 100048 99434 -1 - 615 GTP-binding protein EngB - none -
fig|6666666.229911.peg.526 CDS AEJQ02000012.1 100058 100171 2 + 114 hypothetical protein - none -
fig|6666666.229911.peg.527 CDS AEJQ02000012.1 100181 101056 2 + 876 Membrane protein LAPB - none -
fig|6666666.229911.peg.528 CDS AEJQ02000012.1 101628 101152 -3 - 477 tRNA (cytidine(34)-2@1-O)-methyltransferase (EC 2.1.1.207) Biotin synthesis cluster;
RNA methylation
fig|6666666.229911.peg.529 CDS AEJQ02000012.1 102244 101747 -1 - 498 Phospholipid-binding protein - none -
fig|6666666.229911.peg.530 CDS AEJQ02000012.1 103192 102350 -1 - 843 Methionine ABC transporter substrate-binding protein Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229911.peg.531 CDS AEJQ02000012.1 103904 103227 -2 - 678 Methionine ABC transporter permease protein Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229911.peg.532 CDS AEJQ02000012.1 104931 103894 -3 - 1038 Methionine ABC transporter ATP-binding protein Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229911.peg.533 CDS AEJQ02000012.1 105128 105685 2 + 558 D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase (EC 3.1.1.-) Capsular heptose biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.229911.peg.534 CDS AEJQ02000013.1 663 13 -3 - 651 Mobile element protein - none -
fig|6666666.229911.peg.535 CDS AEJQ02000015.1 31 459 1 + 429 Inner membrane protein forms channel for type IV secretion of T-DNA complex, VirB8 - none -
fig|6666666.229911.peg.536 CDS AEJQ02000016.1 177 788 3 + 612 Outer membrane and periplasm component of type IV secretion of T-DNA complex, has secretin-like domain, VirB9 - none -
fig|6666666.229911.peg.537 CDS AEJQ02000016.1 798 1907 3 + 1110 Inner membrane protein forms channel for type IV secretion of T-DNA complex (VirB10) - none -
fig|6666666.229911.peg.538 CDS AEJQ02000016.1 2309 2929 2 + 621 ATPase required for both assembly of type IV secretion complex and secretion of T-DNA complex, VirB11 - none -
fig|6666666.229911.peg.539 CDS AEJQ02000016.1 2929 4668 1 + 1740 Coupling protein VirD4, ATPase required for T-DNA transfer - none -
fig|6666666.229911.peg.540 CDS AEJQ02000016.1 4714 5058 1 + 345 hypothetical protein - none -
fig|6666666.229911.peg.541 CDS AEJQ02000016.1 6385 6101 -1 - 285 hypothetical protein - none -
fig|6666666.229911.peg.542 CDS AEJQ02000016.1 6549 6382 -3 - 168 hypothetical protein - none -
fig|6666666.229911.peg.543 CDS AEJQ02000016.1 6810 6944 3 + 135 hypothetical protein - none -
fig|6666666.229911.peg.544 CDS AEJQ02000016.1 6969 7610 3 + 642 Chromosome (plasmid) partitioning protein ParA Bacterial Cell Division;
Bacterial Cytoskeleton;
Cell Division Subsystem including YidCD;
RNA modification and chromosome partitioning cluster
fig|6666666.229911.peg.545 CDS AEJQ02000016.1 7603 7842 1 + 240 hypothetical protein - none -
fig|6666666.229911.peg.546 CDS AEJQ02000016.1 7895 8185 2 + 291 filamentation induced by cAMP protein Fic-like protein - none -
fig|6666666.229911.peg.547 CDS AEJQ02000016.1 8819 8352 -2 - 468 Type II secretory pathway, component PulJ - none -
fig|6666666.229911.peg.548 CDS AEJQ02000016.1 9896 9429 -2 - 468 18K peptidoglycan-associated outer membrane lipoprotein; Peptidoglycan-associated lipoprotein precursor; Outer membrane protein P6; OmpA/MotB precursor Ton and Tol transport systems
fig|6666666.229911.peg.549 CDS AEJQ02000016.1 11191 9911 -1 - 1281 tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins Ton and Tol transport systems
fig|6666666.229911.peg.550 CDS AEJQ02000016.1 12434 11226 -2 - 1209 TolA protein Ton and Tol transport systems
fig|6666666.229911.peg.551 CDS AEJQ02000016.1 12873 12451 -3 - 423 Tol biopolymer transport system, TolR protein Ton and Tol transport systems
fig|6666666.229911.peg.552 CDS AEJQ02000016.1 13648 12959 -1 - 690 MotA/TolQ/ExbB proton channel family protein Ton and Tol transport systems
fig|6666666.229911.peg.553 CDS AEJQ02000016.1 14082 13678 -3 - 405 4-hydroxybenzoyl-CoA thioesterase family active site Ton and Tol transport systems
fig|6666666.229911.peg.554 CDS AEJQ02000016.1 14147 14266 2 + 120 hypothetical protein - none -
fig|6666666.229911.peg.555 CDS AEJQ02000016.1 15727 14591 -1 - 1137 Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229911.peg.556 CDS AEJQ02000016.1 17211 15742 -3 - 1470 Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229911.peg.557 CDS AEJQ02000016.1 17759 18070 2 + 312 Chromosome segregation ATPases - none -
fig|6666666.229911.peg.558 CDS AEJQ02000016.1 19143 18124 -3 - 1020 Holliday junction DNA helicase RuvB RuvABC plus a hypothetical
fig|6666666.229911.peg.559 CDS AEJQ02000016.1 19766 19152 -2 - 615 Holliday junction DNA helicase RuvA RuvABC plus a hypothetical
fig|6666666.229911.peg.560 CDS AEJQ02000016.1 20402 19830 -2 - 573 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) RuvABC plus a hypothetical
fig|6666666.229911.peg.561 CDS AEJQ02000016.1 20868 20458 -3 - 411 excinuclease ABC subunit A - none -
fig|6666666.229911.peg.562 CDS AEJQ02000016.1 21620 20880 -2 - 741 FIG000859: hypothetical protein YebC Riboflavin, FMN and FAD metabolism in plants;
RuvABC plus a hypothetical
fig|6666666.229911.peg.563 CDS AEJQ02000016.1 22025 21654 -2 - 372 Dihydroneopterin triphosphate pyrophosphohydrolase type 2 (nudB) Folate Biosynthesis
fig|6666666.229911.peg.564 CDS AEJQ02000016.1 23474 22206 -2 - 1269 Mn2+ and Fe2+ transporters of the NRAMP family - none -
fig|6666666.229911.peg.565 CDS AEJQ02000016.1 23692 23832 1 + 141 hypothetical protein - none -
fig|6666666.229911.peg.566 CDS AEJQ02000016.1 25644 23866 -3 - 1779 Aspartyl-tRNA synthetase (EC 6.1.1.12) tRNA aminoacylation, Asp and Asn
fig|6666666.229911.peg.567 CDS AEJQ02000016.1 26451 27176 3 + 726 tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229911.peg.568 CDS AEJQ02000016.1 29823 27256 -3 - 2568 FIG00362583: hypothetical protein - none -
fig|6666666.229911.peg.569 CDS AEJQ02000016.1 31297 29966 -1 - 1332 Glycerol-3-phosphate transporter - none -
fig|6666666.229911.peg.570 CDS AEJQ02000016.1 31698 33650 3 + 1953 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229911.peg.571 CDS AEJQ02000016.1 33809 34216 2 + 408 Lactoylglutathione lyase (EC 4.4.1.5) Glutathione: Non-redox reactions;
Methylglyoxal Metabolism
fig|6666666.229911.peg.572 CDS AEJQ02000016.1 34303 34956 1 + 654 Ribonuclease T (EC 3.1.13.-) tRNA processing
fig|6666666.229911.peg.573 CDS AEJQ02000016.1 35308 36660 1 + 1353 Histidine permease YuiF - none -
fig|6666666.229911.peg.574 CDS AEJQ02000016.1 36724 37290 1 + 567 Primosomal replication protein N@1@1 - none -
fig|6666666.229911.peg.575 CDS AEJQ02000016.1 38771 37347 -2 - 1425 tRNA-i(6)A37 methylthiotransferase Methylthiotransferases;
tRNA-methylthiotransferase containing cluster;
tRNA modification Archaea;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229911.peg.576 CDS AEJQ02000016.1 38879 39007 2 + 129 hypothetical protein - none -
fig|6666666.229911.peg.577 CDS AEJQ02000016.1 39115 39258 1 + 144 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-) CBSS-87626.3.peg.3639;
Ubiquinone Biosynthesis
fig|6666666.229911.peg.578 CDS AEJQ02000016.1 40703 39972 -2 - 732 FIG053235: Diacylglucosamine hydrolase like Llipid A biosynthesis cluster
fig|6666666.229911.peg.579 CDS AEJQ02000016.1 41676 40705 -3 - 972 Octaprenyl diphosphate synthase (EC 2.5.1.90) Isoprenoinds for Quinones;
Polyprenyl Diphosphate Biosynthesis
fig|6666666.229911.peg.580 CDS AEJQ02000016.1 41942 42253 2 + 312 LSU ribosomal protein L21p CBSS-176279.3.peg.868;
Ribosome LSU bacterial
fig|6666666.229911.peg.581 CDS AEJQ02000016.1 42274 42531 1 + 258 LSU ribosomal protein L27p CBSS-176279.3.peg.868;
Ribosome LSU bacterial
fig|6666666.229911.peg.582 CDS AEJQ02000016.1 42603 43535 3 + 933 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229911.peg.583 CDS AEJQ02000016.1 43613 44530 2 + 918 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229911.peg.584 CDS AEJQ02000016.1 44567 45748 2 + 1182 GTP-binding protein Obg CBSS-176279.3.peg.868
fig|6666666.229911.peg.585 CDS AEJQ02000016.1 45864 45745 -3 - 120 tmRNA-binding protein SmpB Heat shock dnaK gene cluster extended;
Translation termination factors bacterial
fig|6666666.229911.peg.586 CDS AEJQ02000016.1 46298 45816 -2 - 483 tmRNA-binding protein SmpB Heat shock dnaK gene cluster extended;
Translation termination factors bacterial
fig|6666666.229911.peg.587 CDS AEJQ02000016.1 46643 46506 -2 - 138 hypothetical protein - none -
fig|6666666.229911.peg.588 CDS AEJQ02000016.1 46666 48291 1 + 1626 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229911.peg.589 CDS AEJQ02000016.1 48392 49312 2 + 921 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229911.peg.590 CDS AEJQ02000016.1 49322 50260 2 + 939 Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229911.peg.591 CDS AEJQ02000016.1 50270 51253 2 + 984 Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229911.peg.592 CDS AEJQ02000016.1 51250 52248 1 + 999 Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229911.peg.593 CDS AEJQ02000016.1 53062 52355 -1 - 708 Aerobic respiration control protein arcA - none -
fig|6666666.229911.peg.594 CDS AEJQ02000016.1 53464 53324 -1 - 141 LSU ribosomal protein L36p Ribosome LSU bacterial
fig|6666666.229911.peg.595 CDS AEJQ02000016.1 53740 53474 -1 - 267 LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-independent Ribosome LSU bacterial;
Ribosome LSU bacterial
fig|6666666.229911.peg.596 CDS AEJQ02000016.1 54521 53952 -2 - 570 Lysine decarboxylase family - none -
fig|6666666.229911.peg.597 CDS AEJQ02000016.1 54664 56454 1 + 1791 Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8) Biogenesis of c-type cytochromes;
Periplasmic disulfide interchange
fig|6666666.229911.peg.598 CDS AEJQ02000016.1 56556 56443 -3 - 114 hypothetical protein - none -
fig|6666666.229911.peg.599 CDS AEJQ02000016.1 56534 56923 2 + 390 INTEGRAL MEMBRANE PROTEIN (Rhomboid family) - none -
fig|6666666.229911.peg.600 CDS AEJQ02000016.1 60203 57321 -2 - 2883 Ribonuclease E (EC 3.1.26.12) RNA processing and degradation, bacterial;
Ribosome biogenesis bacterial
fig|6666666.229911.peg.601 CDS AEJQ02000016.1 60446 60568 2 + 123 hypothetical protein - none -
fig|6666666.229911.peg.602 CDS AEJQ02000016.1 60678 61637 3 + 960 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) RNA pseudouridine syntheses;
Ribosome biogenesis bacterial
fig|6666666.229911.peg.603 CDS AEJQ02000016.1 62051 61836 -2 - 216 Thioredoxin - none -
fig|6666666.229911.peg.604 CDS AEJQ02000016.1 63254 62259 -2 - 996 D-lactate dehydrogenase (EC 1.1.1.28) Fermentations: Lactate;
Fermentations: Mixed acid
fig|6666666.229911.peg.605 CDS AEJQ02000016.1 64408 63278 -1 - 1131 Cystathionine gamma-synthase (EC 2.5.1.48) Methionine Biosynthesis
fig|6666666.229911.peg.606 CDS AEJQ02000016.1 65388 66206 3 + 819 Peptidoglycan hydrolase VirB1, involved in T-DNA transfer - none -
fig|6666666.229911.peg.607 CDS AEJQ02000016.1 66206 67093 2 + 888 Forms the bulk of type IV secretion complex that spans outer membrane and periplasm (VirB9) - none -
fig|6666666.229911.peg.608 CDS AEJQ02000016.1 67104 68375 3 + 1272 Inner membrane protein forms channel for type IV secretion of T-DNA complex (VirB10) - none -
fig|6666666.229911.peg.609 CDS AEJQ02000016.1 68375 69430 2 + 1056 ATPase required for both assembly of type IV secretion complex and secretion of T-DNA complex, VirB11 - none -
fig|6666666.229911.peg.610 CDS AEJQ02000016.1 69432 69557 3 + 126 hypothetical protein - none -
fig|6666666.229911.peg.611 CDS AEJQ02000016.1 71516 71692 2 + 177 hypothetical protein - none -
fig|6666666.229911.peg.612 CDS AEJQ02000016.1 72597 72956 3 + 360 hypothetical protein - none -
fig|6666666.229911.peg.613 CDS AEJQ02000016.1 74935 73790 -1 - 1146 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) Proline Synthesis
fig|6666666.229911.peg.614 CDS AEJQ02000016.1 75717 75058 -3 - 660 putative membrane protein - none -
fig|6666666.229911.peg.615 CDS AEJQ02000016.1 75914 75798 -2 - 117 hypothetical protein - none -
fig|6666666.229911.peg.616 CDS AEJQ02000016.1 75929 76735 2 + 807 Permeases of the drug/metabolite transporter (DMT) superfamily - none -
fig|6666666.229911.peg.617 CDS AEJQ02000016.1 78006 76999 -3 - 1008 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) Cluster Ytf and putative sugar transporter;
Glycolysis and Gluconeogenesis;
Putative sugar ABC transporter (ytf cluster)
fig|6666666.229911.peg.618 CDS AEJQ02000016.1 78164 79537 2 + 1374 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (EC 6.3.2.-) Peptidoglycan biosynthesis--gjo;
Recycling of Peptidoglycan Amino Acids
fig|6666666.229911.peg.619 CDS AEJQ02000016.1 79917 81035 3 + 1119 Membrane-bound lytic murein transglycosylase A precursor (EC 3.2.1.-) Murein Hydrolases
fig|6666666.229911.peg.620 CDS AEJQ02000016.1 81035 81805 2 + 771 HesA/MoeB/ThiF family protein related to EC-YgdL - none -
fig|6666666.229911.peg.621 CDS AEJQ02000016.1 81905 82924 2 + 1020 Zinc ABC transporter, periplasmic-binding protein ZnuA - none -
fig|6666666.229911.peg.622 CDS AEJQ02000016.1 83052 83864 3 + 813 Outer membrane lipoprotein e (P4) / NMN 5@1-nucleotidase, extracellular (EC 3.1.3.5) NAD and NADP cofactor biosynthesis global
fig|6666666.229911.peg.623 CDS AEJQ02000016.1 84435 83944 -3 - 492 FIG001943: hypothetical protein YajQ Broadly distributed proteins not in subsystems
fig|6666666.229911.peg.624 CDS AEJQ02000016.1 85390 84446 -1 - 945 Phosphoserine phosphatase (EC 3.1.3.3) Glycine and Serine Utilization;
Serine Biosynthesis;
Serine Biosynthesis
fig|6666666.229911.peg.625 CDS AEJQ02000016.1 85466 86143 2 + 678 Lipoate-protein ligase A Lipoic acid metabolism
fig|6666666.229911.peg.626 CDS AEJQ02000016.1 86219 86100 -2 - 120 hypothetical protein - none -
fig|6666666.229911.peg.627 CDS AEJQ02000016.1 86516 86253 -2 - 264 SSU ribosomal protein S20p Ribosome SSU bacterial
fig|6666666.229911.peg.628 CDS AEJQ02000016.1 86784 88361 3 + 1578 Proposed peptidoglycan lipid II flippase MurJ Peptidoglycan lipid II flippase
fig|6666666.229911.peg.629 CDS AEJQ02000016.1 88439 89365 2 + 927 Riboflavin kinase (EC 2.7.1.26) / FMN adenylyltransferase (EC 2.7.7.2) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin, FMN and FAD metabolism in plants;
riboflavin to FAD;
riboflavin to FAD
fig|6666666.229911.peg.630 CDS AEJQ02000016.1 89579 89743 2 + 165 FIG01055344: hypothetical protein - none -
fig|6666666.229911.peg.631 CDS AEJQ02000016.1 89781 92603 3 + 2823 Isoleucyl-tRNA synthetase (EC 6.1.1.5) tRNA aminoacylation, Ile
fig|6666666.229911.peg.632 CDS AEJQ02000016.1 92683 93177 1 + 495 Lipoprotein signal peptidase (EC 3.4.23.36) Lipoprotein Biosynthesis;
Signal peptidase
fig|6666666.229911.peg.633 CDS AEJQ02000016.1 93177 94121 3 + 945 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.229911.peg.634 CDS AEJQ02000016.1 95884 94586 -1 - 1299 Cell division trigger factor (EC 5.2.1.8) Bacterial Cell Division
fig|6666666.229911.peg.635 CDS AEJQ02000016.1 96941 96048 -2 - 894 Tyrosine recombinase XerD - none -
fig|6666666.229911.peg.636 CDS AEJQ02000016.1 98104 96944 -1 - 1161 Probable 3-phenylpropionic acid transporter - none -
fig|6666666.229911.peg.637 CDS AEJQ02000016.1 98343 98104 -3 - 240 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) A Hypothetical Protein Related to Proline Metabolism;
CBSS-630.2.peg.3360;
Proline Synthesis
fig|6666666.229911.peg.638 CDS AEJQ02000016.1 98807 98349 -2 - 459 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) A Hypothetical Protein Related to Proline Metabolism;
CBSS-630.2.peg.3360;
Proline Synthesis
fig|6666666.229911.peg.639 CDS AEJQ02000016.1 98870 99775 2 + 906 DNA recombination-dependent growth factor C DNA repair, bacterial
fig|6666666.229911.peg.640 CDS AEJQ02000016.1 100189 99866 -1 - 324 opacity associated protein - none -
fig|6666666.229911.peg.641 CDS AEJQ02000016.1 101615 100302 -2 - 1314 Cell envelope opacity-associated protein A - none -
fig|6666666.229911.peg.642 CDS AEJQ02000016.1 102818 101787 -2 - 1032 Lysyl-lysine 2,3-aminomutase Translation elongation factor P lysylation
fig|6666666.229911.peg.643 CDS AEJQ02000016.1 102883 103404 1 + 522 Translation elongation factor P Translation elongation factor P lysylation
fig|6666666.229911.peg.644 CDS AEJQ02000016.1 103734 105110 3 + 1377 Tryptophanase (EC 4.1.99.1) - none -
fig|6666666.229911.peg.645 CDS AEJQ02000016.1 105272 106486 2 + 1215 Tyrosine-specific transport protein - none -
fig|6666666.229911.peg.646 CDS AEJQ02000016.1 107229 106552 -3 - 678 YheO-like PAS domain - none -
fig|6666666.229911.peg.647 CDS AEJQ02000016.1 107798 107292 -2 - 507 Arabinose efflux permease - none -
fig|6666666.229911.peg.648 CDS AEJQ02000016.1 108522 107791 -3 - 732 UDP-2,3-diacylglucosamine diphosphatase (EC 3.6.1.54) KDO2-Lipid A biosynthesis;
Llipid A biosynthesis cluster
fig|6666666.229911.peg.649 CDS AEJQ02000016.1 108633 109376 3 + 744 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229911.peg.650 CDS AEJQ02000016.1 109520 109404 -2 - 117 hypothetical protein - none -
fig|6666666.229911.peg.651 CDS AEJQ02000016.1 109754 110695 2 + 942 Putative cell division protein precursor - none -
fig|6666666.229911.peg.652 CDS AEJQ02000016.1 111629 110766 -2 - 864 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229911.peg.653 CDS AEJQ02000016.1 112511 111771 -2 - 741 Pyruvate formate-lyase activating enzyme (EC 1.97.1.4) Fermentations: Mixed acid
fig|6666666.229911.peg.654 CDS AEJQ02000016.1 114968 112656 -2 - 2313 Pyruvate formate-lyase (EC 2.3.1.54) Butanol Biosynthesis;
Fermentations: Mixed acid
fig|6666666.229911.peg.655 CDS AEJQ02000016.1 115918 115067 -1 - 852 Formate efflux transporter (TC 2.A.44 family) Fermentations: Mixed acid
fig|6666666.229911.peg.656 CDS AEJQ02000016.1 116231 116581 2 + 351 Bis(5@1-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17) pyrimidine conversions
fig|6666666.229911.peg.657 CDS AEJQ02000016.1 116582 116935 2 + 354 Predicted periplasmic lipoprotein - none -
fig|6666666.229911.peg.658 CDS AEJQ02000016.1 116937 117983 3 + 1047 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) Murein Hydrolases;
Recycling of Peptidoglycan Amino Sugars
fig|6666666.229911.peg.659 CDS AEJQ02000016.1 117985 119127 1 + 1143 23S rRNA (Uracil-5-) -methyltransferase rumB (EC 2.1.1.-) RNA methylation
fig|6666666.229911.peg.660 CDS AEJQ02000016.1 120192 119227 -3 - 966 6-phosphofructokinase (EC 2.7.1.11) D-Tagatose and Galactitol Utilization;
Glycolysis and Gluconeogenesis
fig|6666666.229911.peg.661 CDS AEJQ02000016.1 120814 120254 -1 - 561 Cobalt-zinc-cadmium resistance protein Cobalt-zinc-cadmium resistance
fig|6666666.229911.peg.662 CDS AEJQ02000016.1 121176 120838 -3 - 339 Cobalt-zinc-cadmium resistance protein Cobalt-zinc-cadmium resistance
fig|6666666.229911.peg.663 CDS AEJQ02000016.1 121742 121176 -2 - 567 FIG00696199: hypothetical protein - none -
fig|6666666.229911.peg.664 CDS AEJQ02000016.1 122523 121744 -3 - 780 UPF0246 protein YaaA - none -
fig|6666666.229911.peg.665 CDS AEJQ02000016.1 123213 122545 -3 - 669 Uracil-DNA glycosylase, family 1 DNA Repair Base Excision;
Uracil-DNA glycosylase
fig|6666666.229911.peg.666 CDS AEJQ02000016.1 123499 123882 1 + 384 Pyruvate formate-lyase (EC 2.3.1.54) Butanol Biosynthesis;
Fermentations: Mixed acid
fig|6666666.229911.peg.667 CDS AEJQ02000016.1 124046 125842 2 + 1797 Translation elongation factor LepA Heat shock dnaK gene cluster extended
fig|6666666.229911.peg.668 CDS AEJQ02000016.1 125853 126875 3 + 1023 Signal peptidase I (EC 3.4.21.89) CBSS-176299.4.peg.1292;
Signal peptidase
fig|6666666.229911.peg.669 CDS AEJQ02000016.1 126882 127562 3 + 681 Ribonuclease III (EC 3.1.26.3) CBSS-176299.4.peg.1292;
RNA processing and degradation, bacterial
fig|6666666.229911.peg.670 CDS AEJQ02000016.1 127559 128467 2 + 909 GTP-binding protein Era Bacterial Cell Division;
CBSS-176299.4.peg.1292;
Glycyl-tRNA synthetase containing cluster;
tRNA modification Archaea
fig|6666666.229911.peg.671 CDS AEJQ02000016.1 129926 128571 -2 - 1356 GTPase and tRNA-U34 5-formylation enzyme TrmE Cell Division Subsystem including YidCD;
RNA modification and chromosome partitioning cluster;
RNA modification cluster;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229911.peg.672 CDS AEJQ02000016.1 131643 130054 -3 - 1590 Inner membrane protein translocase component YidC, long form CTP synthase (EC 6.3.4.2) cluster;
Cell Division Subsystem including YidCD;
RNA modification cluster
fig|6666666.229911.peg.673 CDS AEJQ02000016.1 131948 131685 -2 - 264 Protein YidD Cell Division Subsystem including YidCD;
RNA modification cluster
fig|6666666.229911.peg.674 CDS AEJQ02000016.1 132238 131903 -1 - 336 Ribonuclease P protein component (EC 3.1.26.5) Cell Division Subsystem including YidCD;
RNA modification cluster;
tRNA processing
fig|6666666.229911.peg.675 CDS AEJQ02000016.1 132418 132284 -1 - 135 LSU ribosomal protein L34p Cell Division Subsystem including YidCD;
RNA modification cluster;
Ribosome LSU bacterial
fig|6666666.229911.peg.676 CDS AEJQ02000016.1 132836 134197 2 + 1362 Chromosomal replication initiator protein DnaA Cell Division Subsystem including YidCD;
DNA replication cluster 1
fig|6666666.229911.peg.677 CDS AEJQ02000016.1 134205 135308 3 + 1104 DNA polymerase III beta subunit (EC 2.7.7.7) Cell Division Subsystem including YidCD;
DNA replication cluster 1
fig|6666666.229911.peg.678 CDS AEJQ02000016.1 135312 136388 3 + 1077 DNA recombination and repair protein RecF Cell Division Subsystem including YidCD;
DNA repair, bacterial RecFOR pathway;
DNA replication cluster 1
fig|6666666.229911.peg.679 CDS AEJQ02000016.1 137190 136435 -3 - 756 Ubiquinone/menaquinone biosynthesis methyltransferase UbiE (EC 2.1.1.-) Menaquinone and Phylloquinone Biosynthesis;
Ubiquinone Biosynthesis
fig|6666666.229911.peg.680 CDS AEJQ02000016.1 137378 137953 2 + 576 Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1) Oxidative stress;
Protection from Reactive Oxygen Species
fig|6666666.229911.peg.681 CDS AEJQ02000017.1 122 706 2 + 585 Hydrolase, haloacid dehalogenase-like family - none -
fig|6666666.229911.peg.682 CDS AEJQ02000017.1 1251 1397 3 + 147 Integral membrane protein - none -
fig|6666666.229911.peg.683 CDS AEJQ02000017.1 1444 1641 1 + 198 hypothetical protein - none -
fig|6666666.229911.peg.684 CDS AEJQ02000017.1 2650 1613 -1 - 1038 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) LOS core oligosaccharide biosynthesis
fig|6666666.229911.peg.685 CDS AEJQ02000017.1 4250 2832 -2 - 1419 Aspartate ammonia-lyase (EC 4.3.1.1) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229911.peg.686 CDS AEJQ02000017.1 4480 4962 1 + 483 FxsA protein - none -
fig|6666666.229911.peg.687 CDS AEJQ02000017.1 5049 5339 3 + 291 Heat shock protein 60 family co-chaperone GroES GroEL GroES
fig|6666666.229911.peg.688 CDS AEJQ02000017.1 5460 7103 3 + 1644 Heat shock protein 60 family chaperone GroEL GroEL GroES
fig|6666666.229911.peg.689 CDS AEJQ02000017.1 8049 7192 -3 - 858 Methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5) / Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9) 5-FCL-like protein;
One-carbon metabolism by tetrahydropterines;
One-carbon metabolism by tetrahydropterines;
Serine-glyoxylate cycle;
Serine-glyoxylate cycle
fig|6666666.229911.peg.690 CDS AEJQ02000018.1 484 600 1 + 117 hypothetical protein - none -
fig|6666666.229911.peg.691 CDS AEJQ02000018.1 1744 1163 -1 - 582 Molybdopterin biosynthesis molybdochelatase MogA Molybdenum cofactor biosynthesis
fig|6666666.229911.peg.692 CDS AEJQ02000018.1 1994 1773 -2 - 222 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229911.peg.693 CDS AEJQ02000018.1 2613 2005 -3 - 609 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229911.peg.694 CDS AEJQ02000018.1 4492 2624 -1 - 1869 Putative transport protein - none -
fig|6666666.229911.peg.695 CDS AEJQ02000018.1 5131 4532 -1 - 600 Ribonuclease HII (EC 3.1.26.4) Conserved gene cluster associated with Met-tRNA formyltransferase;
Ribonuclease H
fig|6666666.229911.peg.696 CDS AEJQ02000018.1 6308 5124 -2 - 1185 Lipid-A-disaccharide synthase (EC 2.4.1.182) KDO2-Lipid A biosynthesis;
Llipid A biosynthesis cluster
fig|6666666.229911.peg.697 CDS AEJQ02000018.1 7181 6393 -2 - 789 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase (EC 2.3.1.129) KDO2-Lipid A biosynthesis;
Llipid A biosynthesis cluster
fig|6666666.229911.peg.698 CDS AEJQ02000018.1 7612 7202 -1 - 411 3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabZ form (EC 4.2.1.59) Fatty Acid Biosynthesis FASII;
Llipid A biosynthesis cluster
fig|6666666.229911.peg.699 CDS AEJQ02000018.1 8771 7749 -2 - 1023 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC 2.3.1.191) - none -
fig|6666666.229911.peg.700 CDS AEJQ02000018.1 9346 8771 -1 - 576 Outer membrane chaperone Skp (OmpH) precursor @ Outer membrane protein H precursor Lipopolysaccharide assembly;
Llipid A biosynthesis cluster;
Periplasmic Stress Response
fig|6666666.229911.peg.701 CDS AEJQ02000018.1 11860 9449 -1 - 2412 Outer membrane protein assembly factor YaeT precursor Lipopolysaccharide assembly;
Llipid A biosynthesis cluster
fig|6666666.229911.peg.702 CDS AEJQ02000018.1 13213 11879 -1 - 1335 Membrane-associated zinc metalloprotease - none -
fig|6666666.229911.peg.703 CDS AEJQ02000018.1 14091 13222 -3 - 870 Phosphatidate cytidylyltransferase (EC 2.7.7.41) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229911.peg.704 CDS AEJQ02000018.1 14825 14106 -2 - 720 Undecaprenyl diphosphate synthase (EC 2.5.1.31) CBSS-83331.1.peg.3039;
Isoprenoid Biosynthesis;
Isoprenoinds for Quinones;
Polyprenyl Diphosphate Biosynthesis
fig|6666666.229911.peg.705 CDS AEJQ02000018.1 15686 14847 -2 - 840 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.267) CBSS-83331.1.peg.3039;
Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.229911.peg.706 CDS AEJQ02000018.1 16117 15938 -1 - 180 hypothetical protein - none -
fig|6666666.229911.peg.707 CDS AEJQ02000018.1 16675 16118 -1 - 558 Ribosome recycling factor Ribosome recycling related cluster;
Translation termination factors bacterial
fig|6666666.229911.peg.708 CDS AEJQ02000018.1 16832 16689 -2 - 144 hypothetical protein - none -
fig|6666666.229911.peg.709 CDS AEJQ02000018.1 17613 16900 -3 - 714 Uridine monophosphate kinase (EC 2.7.4.22) CBSS-312309.3.peg.1965;
Ribosome recycling related cluster
fig|6666666.229911.peg.710 CDS AEJQ02000018.1 17671 17802 1 + 132 hypothetical protein - none -
fig|6666666.229911.peg.711 CDS AEJQ02000018.1 19428 17770 -3 - 1659 Mediator of hyperadherence YidE - none -
fig|6666666.229911.peg.712 CDS AEJQ02000018.1 19552 21369 1 + 1818 ABC transporter ATP-binding protein - none -
fig|6666666.229911.peg.713 CDS AEJQ02000018.1 24660 21958 -3 - 2703 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229911.peg.714 CDS AEJQ02000018.1 25783 25028 -1 - 756 Glycerol-3-phosphate regulon repressor GlpR - none -
fig|6666666.229911.peg.715 CDS AEJQ02000018.1 26720 25845 -2 - 876 GlpG protein (membrane protein of glp regulon) - none -
fig|6666666.229911.peg.716 CDS AEJQ02000018.1 26763 27077 3 + 315 Uncharacterized protein PM1437 - none -
fig|6666666.229911.peg.717 CDS AEJQ02000018.1 27415 27089 -1 - 327 Thiosulfate sulfurtransferase GlpE (EC 2.8.1.1) Single-Rhodanese-domain proteins
fig|6666666.229911.peg.718 CDS AEJQ02000018.1 27975 27427 -3 - 549 FIG00903983: hypothetical protein - none -
fig|6666666.229911.peg.719 CDS AEJQ02000018.1 29686 28100 -1 - 1587 DNA recombination protein RmuC DNA repair, bacterial
fig|6666666.229911.peg.720 CDS AEJQ02000018.1 29850 29689 -3 - 162 DNA recombination protein RmuC DNA repair, bacterial
fig|6666666.229911.peg.721 CDS AEJQ02000018.1 29853 30401 3 + 549 Similar to C-terminal Zn-finger domain of DNA topoisomerase I Conserved gene cluster associated with Met-tRNA formyltransferase;
DNA topoisomerases, Type I, ATP-independent
fig|6666666.229911.peg.722 CDS AEJQ02000018.1 30406 30957 1 + 552 TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA - none -
fig|6666666.229911.peg.723 CDS AEJQ02000018.1 30961 31761 1 + 801 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) Chorismate Synthesis;
Cluster containing Alanyl-tRNA synthetase;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229911.peg.724 CDS AEJQ02000018.1 32637 31756 -3 - 882 Protein rarD - none -
fig|6666666.229911.peg.725 CDS AEJQ02000018.1 32855 32670 -2 - 186 HTH-type transcriptional regulator IlvY Alanine biosynthesis;
LysR-family proteins in Escherichia coli;
LysR-family proteins in Salmonella enterica Typhimurium
fig|6666666.229911.peg.726 CDS AEJQ02000018.1 33496 33795 1 + 300 Ketol-acid reductoisomerase (EC 1.1.1.86) Coenzyme A Biosynthesis
fig|6666666.229911.peg.727 CDS AEJQ02000018.1 33959 34075 2 + 117 SSU ribosomal protein S12p (S23e) Ribosomal protein S12p Asp methylthiotransferase;
Ribosome SSU bacterial
fig|6666666.229911.peg.728 CDS AEJQ02000018.1 34254 34391 3 + 138 SSU ribosomal protein S12p (S23e) Ribosomal protein S12p Asp methylthiotransferase;
Ribosome SSU bacterial
fig|6666666.229911.peg.729 CDS AEJQ02000018.1 34544 35014 2 + 471 SSU ribosomal protein S7p (S5e) Ribosome SSU bacterial
fig|6666666.229911.peg.730 CDS AEJQ02000018.1 35129 37231 2 + 2103 Translation elongation factor G Translation elongation factor G family
fig|6666666.229911.peg.731 CDS AEJQ02000019.1 319 690 1 + 372 LSU ribosomal protein L14p (L23e) Ribosome LSU bacterial
fig|6666666.229911.peg.732 CDS AEJQ02000019.1 701 1012 2 + 312 LSU ribosomal protein L24p (L26e) Ribosome LSU bacterial
fig|6666666.229911.peg.733 CDS AEJQ02000019.1 1141 1569 1 + 429 LSU ribosomal protein L5p (L11e) Ribosome LSU bacterial
fig|6666666.229911.peg.734 CDS AEJQ02000019.1 1582 1887 1 + 306 SSU ribosomal protein S14p (S29e) @ SSU ribosomal protein S14p (S29e), zinc-independent Ribosome SSU bacterial;
Ribosome SSU bacterial
fig|6666666.229911.peg.735 CDS AEJQ02000019.1 1924 2316 1 + 393 SSU ribosomal protein S8p (S15Ae) Ribosome SSU bacterial
fig|6666666.229911.peg.736 CDS AEJQ02000019.1 2332 2865 1 + 534 LSU ribosomal protein L6p (L9e) Ribosome LSU bacterial
fig|6666666.229911.peg.737 CDS AEJQ02000019.1 2879 3232 2 + 354 LSU ribosomal protein L18p (L5e) Ribosome LSU bacterial
fig|6666666.229911.peg.738 CDS AEJQ02000019.1 3248 3748 2 + 501 SSU ribosomal protein S5p (S2e) Ribosome SSU bacterial
fig|6666666.229911.peg.739 CDS AEJQ02000019.1 3938 4372 2 + 435 LSU ribosomal protein L15p (L27Ae) Ribosome LSU bacterial
fig|6666666.229911.peg.740 CDS AEJQ02000019.1 4376 5701 2 + 1326 Preprotein translocase secY subunit (TC 3.A.5.1.1) - none -
fig|6666666.229911.peg.741 CDS AEJQ02000019.1 5982 6338 3 + 357 SSU ribosomal protein S13p (S18e) Ribosome SSU bacterial
fig|6666666.229911.peg.742 CDS AEJQ02000019.1 6354 6743 3 + 390 SSU ribosomal protein S11p (S14e) Ribosome SSU bacterial
fig|6666666.229911.peg.743 CDS AEJQ02000019.1 6935 7393 2 + 459 SSU ribosomal protein S4p (S9e) Ribosome SSU bacterial
fig|6666666.229911.peg.744 CDS AEJQ02000019.1 7422 8411 3 + 990 DNA-directed RNA polymerase alpha subunit (EC 2.7.7.6) RNA polymerase bacterial
fig|6666666.229911.peg.745 CDS AEJQ02000019.1 8453 8842 2 + 390 LSU ribosomal protein L17p Ribosome LSU bacterial
fig|6666666.229911.peg.746 CDS AEJQ02000020.1 1745 213 -2 - 1533 Na+/H+ antiporter - none -
fig|6666666.229911.peg.747 CDS AEJQ02000020.1 2186 2584 2 + 399 DNA-binding protein H-NS - none -
fig|6666666.229911.peg.748 CDS AEJQ02000020.1 2636 3505 2 + 870 Formyltetrahydrofolate deformylase (EC 3.5.1.10) 5-FCL-like protein;
One-carbon metabolism by tetrahydropterines
fig|6666666.229911.peg.749 CDS AEJQ02000020.1 3640 4269 1 + 630 Cell division protein FtsJ / Ribosomal RNA large subunit methyltransferase E (EC 2.1.1.-) ## LSU rRNA Um2552 Bacterial Cell Division;
RNA methylation
fig|6666666.229911.peg.750 CDS AEJQ02000020.1 4376 6328 2 + 1953 Cell division protein FtsH (EC 3.4.24.-) Bacterial Cell Division;
Cell division-ribosomal stress proteins cluster;
Folate biosynthesis cluster
fig|6666666.229911.peg.751 CDS AEJQ02000020.1 6425 6961 2 + 537 Putative transporting ATPase - none -
fig|6666666.229911.peg.752 CDS AEJQ02000020.1 8147 7089 -2 - 1059 Ferric iron ABC transporter, ATP-binding protein Iron acquisition in Streptococcus
fig|6666666.229911.peg.753 CDS AEJQ02000020.1 9863 8169 -2 - 1695 Ferric iron ABC transporter, permease protein Iron acquisition in Streptococcus
fig|6666666.229911.peg.754 CDS AEJQ02000020.1 10309 9866 -1 - 444 Thiamin ABC transporter, ATPase component Thiamin biosynthesis
fig|6666666.229911.peg.755 CDS AEJQ02000020.1 10946 10323 -2 - 624 Thiamin ABC transporter, ATPase component Thiamin biosynthesis
fig|6666666.229911.peg.756 CDS AEJQ02000020.1 11966 10968 -2 - 999 ABC-type Fe3+ transport system, periplasmic component - none -
fig|6666666.229911.peg.757 CDS AEJQ02000020.1 12604 13590 1 + 987 Phosphoglycerate transport regulatory protein PgtC Phosphoglycerate transport system
fig|6666666.229911.peg.758 CDS AEJQ02000020.1 13587 15569 3 + 1983 Phosphoglycerate transport system sensor protein PgtB (EC 2.7.3.-) Phosphoglycerate transport system
fig|6666666.229911.peg.759 CDS AEJQ02000020.1 15562 15765 1 + 204 Phosphoglycerate transport system transcriptional regulatory protein PgtA Phosphoglycerate transport system
fig|6666666.229911.peg.760 CDS AEJQ02000020.1 15771 16811 3 + 1041 Phosphoglycerate transport system transcriptional regulatory protein PgtA Phosphoglycerate transport system
fig|6666666.229911.peg.761 CDS AEJQ02000020.1 17698 16859 -1 - 840 NADPH dependent preQ0 reductase (EC 1.7.1.13) - none -
fig|6666666.229911.peg.762 CDS AEJQ02000020.1 18489 17707 -3 - 783 Zn-ribbon-containing, possibly nucleic-acid-binding protein - none -
fig|6666666.229911.peg.763 CDS AEJQ02000020.1 18569 18910 2 + 342 Hypothetical protein YqcC (clustered with tRNA pseudouridine synthase C) - none -
fig|6666666.229911.peg.764 CDS AEJQ02000020.1 18907 19620 1 + 714 tRNA pseudouridine synthase C (EC 4.2.1.70) RNA pseudouridine syntheses;
tRNA modification Bacteria
fig|6666666.229911.peg.765 CDS AEJQ02000020.1 19674 19838 3 + 165 hypothetical protein - none -
fig|6666666.229911.peg.766 CDS AEJQ02000020.1 20029 20238 1 + 210 Cold shock protein CspD Cold shock, CspA family of proteins
fig|6666666.229911.peg.767 CDS AEJQ02000020.1 20750 20304 -2 - 447 Macrodomain Ter protein YcbG - none -
fig|6666666.229911.peg.768 CDS AEJQ02000020.1 20897 22681 2 + 1785 ATP-dependent protease La (EC 3.4.21.53) Type II Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229911.peg.769 CDS AEJQ02000020.1 22824 23354 3 + 531 3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabA form (EC 4.2.1.59) Fatty Acid Biosynthesis FASII
fig|6666666.229911.peg.770 CDS AEJQ02000020.1 23779 24135 1 + 357 DsrE-related protein - none -
fig|6666666.229911.peg.771 CDS AEJQ02000020.1 24206 27871 2 + 3666 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) DNA repair, bacterial RecBCD pathway
fig|6666666.229911.peg.772 CDS AEJQ02000020.1 27871 29850 1 + 1980 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) DNA repair, bacterial RecBCD pathway
fig|6666666.229911.peg.773 CDS AEJQ02000020.1 29863 30459 1 + 597 hypothetical protein - none -
fig|6666666.229911.peg.774 CDS AEJQ02000020.1 30701 31129 2 + 429 LSU ribosomal protein L13p (L13Ae) Ribosome LSU bacterial
fig|6666666.229911.peg.775 CDS AEJQ02000020.1 31146 31538 3 + 393 SSU ribosomal protein S9p (S16e) Ribosome SSU bacterial
fig|6666666.229911.peg.776 CDS AEJQ02000020.1 31699 32484 1 + 786 tRNA pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses;
tRNA modification Archaea;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229911.peg.777 CDS AEJQ02000020.1 32643 32497 -3 - 147 RelE/StbE replicon stabilization toxin Toxin-antitoxin replicon stabilization systems
fig|6666666.229911.peg.778 CDS AEJQ02000020.1 32779 32627 -1 - 153 StbE replicon stabilization toxin - none -
fig|6666666.229911.peg.779 CDS AEJQ02000020.1 33030 32776 -3 - 255 RelB/StbD replicon stabilization protein (antitoxin to RelE/StbE) Toxin-antitoxin replicon stabilization systems
fig|6666666.229911.peg.780 CDS AEJQ02000020.1 34702 33245 -1 - 1458 2-oxoglutarate/malate translocator - none -
fig|6666666.229911.peg.781 CDS AEJQ02000020.1 34932 35711 3 + 780 Protein of unknown function DUF419 - none -
fig|6666666.229911.peg.782 CDS AEJQ02000020.1 38262 35782 -3 - 2481 Trimethylamine-N-oxide reductase (EC 1.6.6.9) - none -
fig|6666666.229911.peg.783 CDS AEJQ02000020.1 39423 38323 -3 - 1101 Cytochrome c-type protein TorY - none -
fig|6666666.229911.peg.784 CDS AEJQ02000020.1 39728 41185 2 + 1458 tRNA S(4)U 4-thiouridine synthase (former ThiI) / Rhodanese-like domain required for thiamine synthesis Thiamin biosynthesis;
Thiamin biosynthesis;
tRNA modification Archaea;
tRNA modification Archaea;
tRNA modification Bacteria;
tRNA modification Bacteria
fig|6666666.229911.peg.785 CDS AEJQ02000020.1 41973 41269 -3 - 705 Alpha-aspartyl dipeptidase Peptidase E (EC 3.4.13.21) Dipeptidases (EC 3.4.13.-)
fig|6666666.229911.peg.786 CDS AEJQ02000020.1 42473 43147 2 + 675 Putative DNA-binding protein in cluster with Type I restriction-modification system Restriction-Modification System
fig|6666666.229911.peg.787 CDS AEJQ02000020.1 44180 43212 -2 - 969 FIG002813: LPPG:FO 2-phospho-L-lactate transferase like, CofD-like - none -
fig|6666666.229911.peg.788 CDS AEJQ02000020.1 44538 45551 3 + 1014 Molybdenum cofactor biosynthesis protein MoaA Molybdenum cofactor biosynthesis;
ar-104-EC Molybdenum cofactor biosynthesis moaABCDE
fig|6666666.229911.peg.789 CDS AEJQ02000020.1 45564 46085 3 + 522 Molybdenum cofactor biosynthesis protein MoaC Molybdenum cofactor biosynthesis;
ar-104-EC Molybdenum cofactor biosynthesis moaABCDE
fig|6666666.229911.peg.790 CDS AEJQ02000020.1 46085 46333 2 + 249 Molybdenum cofactor biosynthesis protein MoaD Molybdenum cofactor biosynthesis;
ar-104-EC Molybdenum cofactor biosynthesis moaABCDE
fig|6666666.229911.peg.791 CDS AEJQ02000020.1 46334 46789 2 + 456 Molybdenum cofactor biosynthesis protein MoaE Molybdenum cofactor biosynthesis;
ar-104-EC Molybdenum cofactor biosynthesis moaABCDE
fig|6666666.229911.peg.792 CDS AEJQ02000020.1 46989 47630 3 + 642 Stringent starvation protein A Carbon Starvation
fig|6666666.229911.peg.793 CDS AEJQ02000020.1 47642 48103 2 + 462 Stringent starvation protein B Carbon Starvation
fig|6666666.229911.peg.794 CDS AEJQ02000020.1 49669 48266 -1 - 1404 Asparaginyl-tRNA synthetase (EC 6.1.1.22) tRNA aminoacylation, Asp and Asn;
tRNA modification Archaea
fig|6666666.229911.peg.795 CDS AEJQ02000020.1 49865 51094 2 + 1230 Mlc, transcriptional repressor of MalT (the transcriptional activator of maltose regulon) and manXYZ operon Maltose and Maltodextrin Utilization
fig|6666666.229911.peg.796 CDS AEJQ02000020.1 51171 51899 3 + 729 Dethiobiotin synthetase (EC 6.3.3.3) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229911.peg.797 CDS AEJQ02000020.1 52707 51988 -3 - 720 Autoinducer 2 (AI-2) kinase LsrK (EC 2.7.1.-) Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229911.peg.798 CDS AEJQ02000020.1 60274 59309 -1 - 966 LsrR, transcriptional repressor of lsr operon Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229911.peg.799 CDS AEJQ02000020.1 60518 60745 2 + 228 Autoinducer 2 (AI-2) ABC transport system, fused AI2 transporter subunits and ATP-binding component Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229911.peg.800 CDS AEJQ02000020.1 60732 61712 3 + 981 Autoinducer 2 (AI-2) ABC transport system, fused AI2 transporter subunits and ATP-binding component Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229911.peg.801 CDS AEJQ02000020.1 61749 62033 3 + 285 Autoinducer 2 (AI-2) ABC transport system, fused AI2 transporter subunits and ATP-binding component Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229911.peg.802 CDS AEJQ02000020.1 62043 63074 3 + 1032 Autoinducer 2 (AI-2) ABC transport system, membrane channel protein LsrC Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229911.peg.803 CDS AEJQ02000020.1 63088 64008 1 + 921 Autoinducer 2 (AI-2) ABC transport system, membrane channel protein LsrD Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229911.peg.804 CDS AEJQ02000020.1 64117 65214 1 + 1098 Autoinducer 2 (AI-2) ABC transport system, periplasmic AI-2 binding protein LsrB Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229911.peg.805 CDS AEJQ02000020.1 65238 66116 3 + 879 Autoinducer 2 (AI-2) aldolase LsrF (EC 4.2.1.-) Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229911.peg.806 CDS AEJQ02000020.1 66149 66451 2 + 303 Autoinducer 2 (AI-2) modifying protein LsrG Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229911.peg.807 CDS AEJQ02000020.1 67961 66555 -2 - 1407 Pyruvate kinase (EC 2.7.1.40) Entner-Doudoroff Pathway;
Glycerate metabolism;
Glycolysis and Gluconeogenesis;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229911.peg.808 CDS AEJQ02000020.1 69236 68247 -2 - 990 Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) Ribonucleotide reduction
fig|6666666.229911.peg.809 CDS AEJQ02000020.1 71054 69369 -2 - 1686 Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) Ribonucleotide reduction
fig|6666666.229911.peg.810 CDS AEJQ02000020.1 72135 71329 -3 - 807 Tryptophan synthase alpha chain (EC 4.2.1.20) Auxin biosynthesis;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229911.peg.811 CDS AEJQ02000020.1 73331 72138 -2 - 1194 Tryptophan synthase beta chain (EC 4.2.1.20) Auxin biosynthesis;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229911.peg.812 CDS AEJQ02000020.1 74108 73341 -2 - 768 3-hydroxypropionate dehydrogenase (EC 1.1.1.298) - none -
fig|6666666.229911.peg.813 CDS AEJQ02000020.1 74141 74272 2 + 132 hypothetical protein - none -
fig|6666666.229911.peg.814 CDS AEJQ02000020.1 74772 77216 3 + 2445 Outer membrane receptor for lactoferrin or transferrin, TonB-dependent protein A - none -
fig|6666666.229911.peg.815 CDS AEJQ02000020.1 77552 77421 -2 - 132 hypothetical protein - none -
fig|6666666.229911.peg.816 CDS AEJQ02000020.1 78924 77620 -3 - 1305 Oxaloacetate decarboxylase beta chain (EC 4.1.1.3) Na+ translocating decarboxylases and related biotin-dependent enzymes;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229911.peg.817 CDS AEJQ02000020.1 80731 78935 -1 - 1797 Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3) Na+ translocating decarboxylases and related biotin-dependent enzymes;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229911.peg.818 CDS AEJQ02000020.1 81013 80747 -1 - 267 Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3) Na+ translocating decarboxylases and related biotin-dependent enzymes;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229911.peg.819 CDS AEJQ02000020.1 82313 82038 -2 - 276 [NiFe] hydrogenase metallocenter assembly protein HybG G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229911.peg.820 CDS AEJQ02000020.1 82629 82462 -3 - 168 hypothetical protein - none -
fig|6666666.229911.peg.821 CDS AEJQ02000020.1 84198 82768 -3 - 1431 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24) Auxin biosynthesis;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis;
Tryptophan synthesis
fig|6666666.229911.peg.822 CDS AEJQ02000020.1 84485 84207 -2 - 279 HigA protein (antitoxin to HigB) Toxin-antitoxin replicon stabilization systems
fig|6666666.229911.peg.823 CDS AEJQ02000020.1 84773 84495 -2 - 279 HigB toxin protein Toxin-antitoxin replicon stabilization systems
fig|6666666.229911.peg.824 CDS AEJQ02000020.1 85869 84868 -3 - 1002 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) Auxin biosynthesis;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229911.peg.825 CDS AEJQ02000020.1 86273 85881 -2 - 393 putative - none -
fig|6666666.229911.peg.826 CDS AEJQ02000020.1 86937 86347 -3 - 591 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229911.peg.827 CDS AEJQ02000020.1 89120 88566 -2 - 555 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC 3.1.3.45) KDO2-Lipid A biosynthesis
fig|6666666.229911.peg.828 CDS AEJQ02000020.1 90055 89120 -1 - 936 Arabinose 5-phosphate isomerase (EC 5.3.1.13) KDO2-Lipid A biosynthesis
fig|6666666.229911.peg.829 CDS AEJQ02000020.1 91851 92840 3 + 990 Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20) tRNA aminoacylation, Phe
fig|6666666.229911.peg.830 CDS AEJQ02000020.1 92860 95250 1 + 2391 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) tRNA aminoacylation, Phe
fig|6666666.229911.peg.831 CDS AEJQ02000020.1 95254 95550 1 + 297 Integration host factor alpha subunit DNA structural proteins, bacterial
fig|6666666.229911.peg.832 CDS AEJQ02000020.1 95602 96090 1 + 489 Probable lipoprotein nlpC precursor - none -
fig|6666666.229911.peg.833 CDS AEJQ02000020.1 97150 96185 -1 - 966 tRNA(Cytosine32)-2-thiocytidine synthetase CBSS-326442.4.peg.1852;
tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229911.peg.834 CDS AEJQ02000020.1 97291 97707 1 + 417 putative membrane protein - none -
fig|6666666.229911.peg.835 CDS AEJQ02000020.1 99545 97797 -2 - 1749 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins Ton and Tol transport systems
fig|6666666.229911.peg.836 CDS AEJQ02000020.1 99537 99821 3 + 285 ABC transporter, solute-binding protein - none -
fig|6666666.229911.peg.837 CDS AEJQ02000020.1 99821 100834 2 + 1014 Vitamin B12 ABC transporter, permease component BtuC - none -
fig|6666666.229911.peg.838 CDS AEJQ02000020.1 100831 101580 1 + 750 ABC transporter ATP-binding protein - none -
fig|6666666.229911.peg.839 CDS AEJQ02000020.1 101675 102535 2 + 861 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins Ton and Tol transport systems
fig|6666666.229911.peg.840 CDS AEJQ02000020.1 102563 104071 2 + 1509 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins Ton and Tol transport systems
fig|6666666.229911.peg.841 CDS AEJQ02000020.1 104399 104190 -2 - 210 Molybdate-binding domain of ModE Molybdenum cofactor biosynthesis
fig|6666666.229911.peg.842 CDS AEJQ02000020.1 105515 104481 -2 - 1035 FIG00362752: hypothetical protein - none -
fig|6666666.229911.peg.843 CDS AEJQ02000020.1 106322 105528 -2 - 795 Glutathione synthetase (EC 6.3.2.3) Cluster containing Glutathione synthetase;
Glutathione: Biosynthesis and gamma-glutamyl cycle;
Heat shock dnaK gene cluster extended
fig|6666666.229911.peg.844 CDS AEJQ02000020.1 107341 106322 -1 - 1020 Vitamin B12 ABC transporter, permease component BtuC - none -
fig|6666666.229911.peg.845 CDS AEJQ02000020.1 107491 107360 -1 - 132 hypothetical protein - none -
fig|6666666.229911.peg.846 CDS AEJQ02000020.1 108887 107469 -2 - 1419 Outer membrane component of tripartite multidrug resistance system Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria
fig|6666666.229911.peg.847 CDS AEJQ02000020.1 110034 108907 -3 - 1128 ABC-type multidrug transport system, permease component - none -
fig|6666666.229911.peg.848 CDS AEJQ02000020.1 112780 110036 -1 - 2745 ABC-type multidrug transport system, permease component - none -
fig|6666666.229911.peg.849 CDS AEJQ02000020.1 113763 112783 -3 - 981 HlyD family secretion protein - none -
fig|6666666.229911.peg.850 CDS AEJQ02000020.1 113911 114474 1 + 564 Transcriptional regulator, TetR family - none -
fig|6666666.229911.peg.851 CDS AEJQ02000020.1 115715 114525 -2 - 1191 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229911.peg.852 CDS AEJQ02000020.1 116137 118746 1 + 2610 Membrane alanine aminopeptidase N (EC 3.4.11.2) Aminopeptidases (EC 3.4.11.-)
fig|6666666.229911.peg.853 CDS AEJQ02000020.1 118819 119838 1 + 1020 Dihydroorotate dehydrogenase (EC 1.3.3.1) De Novo Pyrimidine Synthesis
fig|6666666.229911.peg.854 CDS AEJQ02000020.1 119852 120688 2 + 837 COG0613, Predicted metal-dependent phosphoesterases (PHP family) tRNA modification Bacteria
fig|6666666.229911.peg.855 CDS AEJQ02000020.1 122409 123434 3 + 1026 DNA topoisomerase I (EC 5.99.1.2) CBSS-272943.3.peg.1367;
Conserved gene cluster associated with Met-tRNA formyltransferase;
DNA topoisomerases, Type I, ATP-independent
fig|6666666.229911.peg.856 CDS AEJQ02000020.1 124355 123519 -2 - 837 ABC-type Co2+ transport system, periplasmic component - none -
fig|6666666.229911.peg.857 CDS AEJQ02000020.1 125414 124482 -2 - 933 Universal stress protein E Universal stress protein family
fig|6666666.229911.peg.858 CDS AEJQ02000020.1 126198 125533 -3 - 666 Fumarate and nitrate reduction regulatory protein Oxidative stress
fig|6666666.229911.peg.859 CDS AEJQ02000020.1 126415 126585 1 + 171 hypothetical protein - none -
fig|6666666.229911.peg.860 CDS AEJQ02000020.1 127144 126647 -1 - 498 Ferritin-like protein 2 - none -
fig|6666666.229911.peg.861 CDS AEJQ02000020.1 127645 127160 -1 - 486 Ferritin-like protein 2 - none -
fig|6666666.229911.peg.862 CDS AEJQ02000021.1 159 299 3 + 141 hypothetical protein - none -
fig|6666666.229911.peg.863 CDS AEJQ02000021.1 1059 943 -3 - 117 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229911.peg.864 CDS AEJQ02000021.1 1493 1266 -2 - 228 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229911.peg.865 CDS AEJQ02000022.1 160 618 1 + 459 Mobile element protein - none -
fig|6666666.229911.peg.866 CDS AEJQ02000022.1 1689 991 -3 - 699 NAD-dependent protein deacetylase of SIR2 family Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229911.peg.867 CDS AEJQ02000022.1 1899 1705 -3 - 195 Glutaredoxin 2 Glutaredoxins;
Glutathione: Redox cycle
fig|6666666.229911.peg.868 CDS AEJQ02000022.1 2456 2244 -2 - 213 hypothetical protein - none -
fig|6666666.229911.peg.869 CDS AEJQ02000022.1 3915 2440 -3 - 1476 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) Bacterial Cell Division;
CBSS-354.1.peg.2917;
RNA processing and degradation, bacterial
fig|6666666.229911.peg.870 CDS AEJQ02000022.1 4221 5525 3 + 1305 Proline/sodium symporter PutP (TC 2.A.21.2.1) @ Propionate/sodium symporter - none -
fig|6666666.229911.peg.871 CDS AEJQ02000022.1 5539 6504 1 + 966 tRNA (5-methoxyuridine) 34 synthase tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229911.peg.872 CDS AEJQ02000022.1 6592 7890 1 + 1299 Adenylosuccinate synthetase (EC 6.3.4.4) Purine conversions
fig|6666666.229911.peg.873 CDS AEJQ02000022.1 8245 7955 -1 - 291 hypothetical protein - none -
fig|6666666.229911.peg.874 CDS AEJQ02000022.1 9251 8268 -2 - 984 DnaJ-class molecular chaperone CbpA Protein chaperones
fig|6666666.229911.peg.875 CDS AEJQ02000022.1 9539 11071 2 + 1533 GTP-binding protein EngA CBSS-290633.1.peg.1906;
CBSS-498211.3.peg.1415
fig|6666666.229911.peg.876 CDS AEJQ02000022.1 12337 11141 -1 - 1197 Sugar efflux transporter SotB - none -
fig|6666666.229911.peg.877 CDS AEJQ02000022.1 13541 12339 -2 - 1203 FIG00696476: hypothetical protein - none -
fig|6666666.229911.peg.878 CDS AEJQ02000022.1 14126 13542 -2 - 585 Deoxycytidine triphosphate deaminase (EC 3.5.4.13) pyrimidine conversions
fig|6666666.229911.peg.879 CDS AEJQ02000022.1 14786 14136 -2 - 651 Uridine kinase (EC 2.7.1.48) [C1] pyrimidine conversions
fig|6666666.229911.peg.880 CDS AEJQ02000022.1 15095 16135 2 + 1041 Ferric iron ABC transporter, iron-binding protein Iron acquisition in Streptococcus
fig|6666666.229911.peg.881 CDS AEJQ02000022.1 16588 17340 1 + 753 Ferric iron ABC transporter, iron-binding protein Iron acquisition in Streptococcus
fig|6666666.229911.peg.882 CDS AEJQ02000022.1 17368 19425 1 + 2058 Ferric iron ABC transporter, permease protein Iron acquisition in Streptococcus
fig|6666666.229911.peg.883 CDS AEJQ02000022.1 19441 20487 1 + 1047 Fe(3+) ions import ATP-binding protein fbpC (EC 3.6.3.30) - none -
fig|6666666.229911.peg.884 CDS AEJQ02000022.1 20766 22877 3 + 2112 unknown - none -
fig|6666666.229911.peg.885 CDS AEJQ02000022.1 23730 22930 -3 - 801 Inositol-1-monophosphatase (EC 3.1.3.25) - none -
fig|6666666.229911.peg.886 CDS AEJQ02000022.1 23881 24621 1 + 741 tRNA:Cm32/Um32 methyltransferase RNA methylation;
tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229911.peg.887 CDS AEJQ02000022.1 24683 25156 2 + 474 Iron-sulfur cluster regulator IscR Alanine biosynthesis;
Rrf2 family transcriptional regulators
fig|6666666.229911.peg.888 CDS AEJQ02000022.1 25210 26424 1 + 1215 Cysteine desulfurase (EC 2.8.1.7), IscS subfamily Alanine biosynthesis;
Thiamin biosynthesis;
mnm5U34 biosynthesis bacteria;
tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229911.peg.889 CDS AEJQ02000022.1 26484 26867 3 + 384 Iron-sulfur cluster assembly scaffold protein IscU Alanine biosynthesis;
tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229911.peg.890 CDS AEJQ02000022.1 26999 27322 2 + 324 Iron binding protein IscA for iron-sulfur cluster assembly Alanine biosynthesis;
tRNA modification Bacteria
fig|6666666.229911.peg.891 CDS AEJQ02000022.1 27334 27855 1 + 522 Chaperone protein HscB Protein chaperones;
tRNA modification Bacteria
fig|6666666.229911.peg.892 CDS AEJQ02000022.1 27876 29735 3 + 1860 Chaperone protein HscA Alanine biosynthesis;
Protein chaperones;
tRNA modification Bacteria
fig|6666666.229911.peg.893 CDS AEJQ02000022.1 29747 30088 2 + 342 Ferredoxin, 2Fe-2S Alanine biosynthesis;
Soluble cytochromes and functionally related electron carriers;
tRNA modification Bacteria
fig|6666666.229911.peg.894 CDS AEJQ02000022.1 30088 30282 1 + 195 Believed to be involved in assembly of Fe-S clusters tRNA modification Bacteria
fig|6666666.229911.peg.895 CDS AEJQ02000022.1 32476 30416 -1 - 2061 Methionyl-tRNA synthetase (EC 6.1.1.10) Scaffold proteins for [4Fe-4S] cluster assembly (MRP family);
tRNA aminoacylation, Met
fig|6666666.229911.peg.896 CDS AEJQ02000022.1 32649 33761 3 + 1113 Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like Scaffold proteins for [4Fe-4S] cluster assembly (MRP family)
fig|6666666.229911.peg.897 CDS AEJQ02000022.1 33858 33739 -3 - 120 hypothetical protein - none -
fig|6666666.229911.peg.898 CDS AEJQ02000022.1 34996 33851 -1 - 1146 Beta-hexosaminidase (EC 3.2.1.52) Chitin and N-acetylglucosamine utilization
fig|6666666.229911.peg.899 CDS AEJQ02000022.1 35557 35132 -1 - 426 Nucleoside diphosphate kinase (EC 2.7.4.6) CBSS-498211.3.peg.1415;
Purine conversions;
pyrimidine conversions
fig|6666666.229911.peg.900 CDS AEJQ02000022.1 36876 35569 -3 - 1308 Peptidase B (EC 3.4.11.23) Aminopeptidases (EC 3.4.11.-)
fig|6666666.229911.peg.901 CDS AEJQ02000022.1 37041 36919 -3 - 123 hypothetical protein - none -
fig|6666666.229911.peg.902 CDS AEJQ02000022.1 37096 37314 1 + 219 Translation initiation factor 1 Translation initiation factors bacterial
fig|6666666.229911.peg.903 CDS AEJQ02000022.1 38921 37377 -2 - 1545 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE Copper homeostasis: copper tolerance;
Lipoprotein Biosynthesis;
tRNA-methylthiotransferase containing cluster;
tRNA-methylthiotransferase containing cluster
fig|6666666.229911.peg.904 CDS AEJQ02000022.1 40209 39313 -3 - 897 Magnesium and cobalt efflux protein CorC CBSS-56780.10.peg.1536;
Copper homeostasis: copper tolerance;
Glycyl-tRNA synthetase containing cluster;
Magnesium transport;
tRNA-methylthiotransferase containing cluster
fig|6666666.229911.peg.905 CDS AEJQ02000022.1 40289 40417 2 + 129 hypothetical protein - none -
fig|6666666.229911.peg.906 CDS AEJQ02000022.1 40455 41462 3 + 1008 [Citrate [pro-3S]-lyase] ligase (EC 6.2.1.22) Citrate Metabolism, Transport, and Regulation
fig|6666666.229911.peg.907 CDS AEJQ02000022.1 41502 41789 3 + 288 Citrate lyase gamma chain, acyl carrier protein (EC 4.1.3.6) Citrate Metabolism, Transport, and Regulation;
TCA Cycle
fig|6666666.229911.peg.908 CDS AEJQ02000022.1 41786 42661 2 + 876 Citrate lyase beta chain (EC 4.1.3.6) Citrate Metabolism, Transport, and Regulation
fig|6666666.229911.peg.909 CDS AEJQ02000022.1 42676 44178 1 + 1503 Citrate lyase alpha chain (EC 4.1.3.6) Citrate Metabolism, Transport, and Regulation
fig|6666666.229911.peg.910 CDS AEJQ02000022.1 44372 45784 2 + 1413 2-(5@1@1-triphosphoribosyl)-3@1-dephosphocoenzyme-A synthase (EC 2.7.8.25) Citrate Metabolism, Transport, and Regulation
fig|6666666.229911.peg.911 CDS AEJQ02000022.1 45771 47204 3 + 1434 2-oxoglutarate/malate translocator - none -
fig|6666666.229911.peg.912 CDS AEJQ02000022.1 47483 48982 2 + 1500 Putative ATP /GTP binding protein - none -
fig|6666666.229911.peg.913 CDS AEJQ02000022.1 50278 49247 -1 - 1032 Aldose 1-epimerase (EC 5.1.3.3) Lactose and Galactose Uptake and Utilization;
Maltose and Maltodextrin Utilization
fig|6666666.229911.peg.914 CDS AEJQ02000022.1 51426 50272 -3 - 1155 Galactokinase (EC 2.7.1.6) Lactose and Galactose Uptake and Utilization
fig|6666666.229911.peg.915 CDS AEJQ02000022.1 52536 51493 -3 - 1044 Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10) Lactose and Galactose Uptake and Utilization
fig|6666666.229911.peg.916 CDS AEJQ02000022.1 52783 53796 1 + 1014 Galactose operon repressor, GalR-LacI family of transcriptional regulators Lactose and Galactose Uptake and Utilization
fig|6666666.229911.peg.917 CDS AEJQ02000022.1 54011 55003 2 + 993 Galactose/methyl galactoside ABC transport system, D-galactose-binding periplasmic protein MglB (TC 3.A.1.2.3) Bacterial Chemotaxis;
Lactose and Galactose Uptake and Utilization
fig|6666666.229911.peg.918 CDS AEJQ02000022.1 55078 55425 1 + 348 Galactose/methyl galactoside ABC transport system, ATP-binding protein MglA (EC 3.6.3.17) Lactose and Galactose Uptake and Utilization
fig|6666666.229911.peg.919 CDS AEJQ02000022.1 55456 56616 1 + 1161 Galactose/methyl galactoside ABC transport system, ATP-binding protein MglA (EC 3.6.3.17) Lactose and Galactose Uptake and Utilization
fig|6666666.229911.peg.920 CDS AEJQ02000022.1 56635 57645 1 + 1011 Galactose/methyl galactoside ABC transport system, permease protein MglC (TC 3.A.1.2.3) Lactose and Galactose Uptake and Utilization
fig|6666666.229911.peg.921 CDS AEJQ02000022.1 59566 57719 -1 - 1848 Aerobic respiration control sensor protein arcB (EC 2.7.3.-) - none -
fig|6666666.229911.peg.922 CDS AEJQ02000022.1 59592 59726 3 + 135 hypothetical protein - none -
fig|6666666.229911.peg.923 CDS AEJQ02000022.1 60927 59707 -3 - 1221 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41) Fatty Acid Biosynthesis FASII
fig|6666666.229911.peg.924 CDS AEJQ02000022.1 61097 63115 2 + 2019 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) CBSS-354.1.peg.876;
RNA methylation;
Riboflavin, FMN and FAD metabolism in plants;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229911.peg.925 CDS AEJQ02000022.1 63305 66376 2 + 3072 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229911.peg.926 CDS AEJQ02000022.1 67065 66487 -3 - 579 Heat shock protein GrpE GroEL GroES;
Heat shock dnaK gene cluster extended;
Protein chaperones
fig|6666666.229911.peg.927 CDS AEJQ02000022.1 67033 67161 1 + 129 hypothetical protein - none -
fig|6666666.229911.peg.928 CDS AEJQ02000022.1 67206 68123 3 + 918 NAD kinase (EC 2.7.1.23) NAD and NADP cofactor biosynthesis global
fig|6666666.229911.peg.929 CDS AEJQ02000022.1 68197 69873 1 + 1677 DNA repair protein RecN DNA repair, bacterial
fig|6666666.229911.peg.930 CDS AEJQ02000022.1 70538 69891 -2 - 648 Outer membrane protein W precursor - none -
fig|6666666.229911.peg.931 CDS AEJQ02000022.1 70624 70776 1 + 153 hypothetical protein - none -
fig|6666666.229911.peg.932 CDS AEJQ02000022.1 70810 71568 1 + 759 Membrane protein involved in the export of O-antigen and teichoic acid - none -
fig|6666666.229911.peg.933 CDS AEJQ02000022.1 71574 72125 3 + 552 Intracellular septation protein IspA CBSS-211586.9.peg.2729;
Intracellular septation in Enterobacteria
fig|6666666.229911.peg.934 CDS AEJQ02000022.1 72129 72599 3 + 471 Acyl-CoA thioesterase YciA, involved in membrane biogenesis CBSS-211586.9.peg.2729;
Intracellular septation in Enterobacteria
fig|6666666.229911.peg.935 CDS AEJQ02000022.1 72602 72898 2 + 297 YciL protein Broadly distributed proteins not in subsystems;
CBSS-211586.9.peg.2729
fig|6666666.229911.peg.936 CDS AEJQ02000022.1 73425 75641 3 + 2217 Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) Murein Hydrolases
fig|6666666.229911.peg.937 CDS AEJQ02000022.1 75674 75982 2 + 309 Transcriptional repressor protein TrpR Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate);
Tryptophan synthesis
fig|6666666.229911.peg.938 CDS AEJQ02000022.1 75960 76733 3 + 774 Monofunctional biosynthetic peptidoglycan transglycosylase (EC 2.4.2.-) Peptidoglycan Biosynthesis
fig|6666666.229911.peg.939 CDS AEJQ02000022.1 77244 76990 -3 - 255 hypothetical protein - none -
fig|6666666.229911.peg.940 CDS AEJQ02000022.1 77766 77428 -3 - 339 Preprotein translocase subunit SecG (TC 3.A.5.1.1) CBSS-331978.3.peg.2915;
Murein hydrolase regulation and cell death
fig|6666666.229911.peg.941 CDS AEJQ02000022.1 77925 77794 -3 - 132 hypothetical protein - none -
fig|6666666.229911.peg.942 CDS AEJQ02000022.1 79876 77939 -1 - 1938 DNA topoisomerase III (EC 5.99.1.2) DNA processing cluster;
DNA topoisomerases, Type I, ATP-independent
fig|6666666.229911.peg.943 CDS AEJQ02000022.1 80510 79908 -2 - 603 Recombination protein RecR DNA processing cluster;
DNA repair, bacterial RecFOR pathway
fig|6666666.229911.peg.944 CDS AEJQ02000022.1 80723 80595 -2 - 129 FIG000557: hypothetical protein co-occurring with RecR DNA processing cluster
fig|6666666.229911.peg.945 CDS AEJQ02000022.1 81104 82174 2 + 1071 Phosphoesterase (EC 3.1.-.-) - none -
fig|6666666.229911.peg.946 CDS AEJQ02000022.1 82245 83138 3 + 894 Iron(III) dicitrate transport system, periplasmic iron-binding protein FecB (TC 3.A.1.14.1) - none -
fig|6666666.229911.peg.947 CDS AEJQ02000022.1 83138 84127 2 + 990 Iron(III) dicitrate transport system permease protein FecC (TC 3.A.1.14.1) - none -
fig|6666666.229911.peg.948 CDS AEJQ02000022.1 84127 85110 1 + 984 Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1) - none -
fig|6666666.229911.peg.949 CDS AEJQ02000022.1 85110 85877 3 + 768 Iron(III) dicitrate transport ATP-binding protein FecE (TC 3.A.1.14.1) - none -
fig|6666666.229911.peg.950 CDS AEJQ02000022.1 86914 85943 -1 - 972 Translation elongation factor P Lys34:lysine transferase Translation elongation factor P lysylation
fig|6666666.229911.peg.951 CDS AEJQ02000022.1 86978 87166 2 + 189 hypothetical protein - none -
fig|6666666.229911.peg.952 CDS AEJQ02000022.1 87222 89030 3 + 1809 Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) Serine-glyoxylate cycle;
Succinate dehydrogenase;
TCA Cycle
fig|6666666.229911.peg.953 CDS AEJQ02000022.1 89035 89805 1 + 771 Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) 5-FCL-like protein;
Serine-glyoxylate cycle;
Succinate dehydrogenase;
TCA Cycle
fig|6666666.229911.peg.954 CDS AEJQ02000022.1 89817 90209 3 + 393 Fumarate reductase subunit C Succinate dehydrogenase
fig|6666666.229911.peg.955 CDS AEJQ02000022.1 90219 90563 3 + 345 Fumarate reductase subunit D Succinate dehydrogenase
fig|6666666.229911.peg.956 CDS AEJQ02000022.1 92807 90660 -2 - 2148 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) RNA methylation
fig|6666666.229911.peg.957 CDS AEJQ02000022.1 93078 94106 3 + 1029 Alcohol dehydrogenase (EC 1.1.1.1) 5-FCL-like protein;
Butanol Biosynthesis;
Fermentations: Mixed acid;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229911.peg.958 CDS AEJQ02000022.1 95399 94185 -2 - 1215 ATPase component BioM of energizing module of biotin ECF transporter Biotin biosynthesis;
Biotin synthesis cluster;
ECF class transporters
fig|6666666.229911.peg.959 CDS AEJQ02000022.1 96222 95524 -3 - 699 Queuosine Biosynthesis QueC ATPase Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229911.peg.960 CDS AEJQ02000022.1 96393 96256 -3 - 138 Queuosine Biosynthesis QueC ATPase Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229911.peg.961 CDS AEJQ02000022.1 96577 97041 1 + 465 FIG00710847: hypothetical protein - none -
fig|6666666.229911.peg.962 CDS AEJQ02000022.1 97014 97838 3 + 825 FIG00711691: hypothetical protein - none -
fig|6666666.229911.peg.963 CDS AEJQ02000022.1 98249 98070 -2 - 180 hypothetical protein - none -
fig|6666666.229911.peg.964 CDS AEJQ02000022.1 99173 98349 -2 - 825 3@1,5@1-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17) cAMP signaling in bacteria
fig|6666666.229911.peg.965 CDS AEJQ02000022.1 99847 99224 -1 - 624 ADP-ribose pyrophosphatase (EC 3.6.1.13) CBSS-216591.1.peg.168;
NAD and NADP cofactor biosynthesis global;
Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229911.peg.966 CDS AEJQ02000022.1 100773 100093 -3 - 681 FIG009095: D,D-carboxypeptidase family protein CBSS-584.1.peg.1352
fig|6666666.229911.peg.967 CDS AEJQ02000022.1 101908 100775 -1 - 1134 N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18) A Glutathione-dependent Thiol Reductase Associated with a Step in Lysine Biosynthesis;
CBSS-584.1.peg.1352;
Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229911.peg.968 CDS AEJQ02000022.1 102389 102045 -2 - 345 FIG138056: a glutathione-dependent thiol reductase A Glutathione-dependent Thiol Reductase Associated with a Step in Lysine Biosynthesis;
CBSS-584.1.peg.1352
fig|6666666.229911.peg.969 CDS AEJQ02000022.1 104335 102455 -1 - 1881 Chaperone protein HtpG Protein chaperones
fig|6666666.229911.peg.970 CDS AEJQ02000022.1 105629 104469 -2 - 1161 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) Chorismate Synthesis;
Chorismate Synthesis;
Phenylalanine and Tyrosine Branches from Chorismate;
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229911.peg.971 CDS AEJQ02000022.1 106744 105827 -1 - 918 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC 3.5.1.108) KDO2-Lipid A biosynthesis
fig|6666666.229911.peg.972 CDS AEJQ02000022.1 108065 106782 -2 - 1284 Cell division protein FtsZ (EC 3.4.24.-) Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ;
cell division core of larger cluster
fig|6666666.229911.peg.973 CDS AEJQ02000022.1 109393 108149 -1 - 1245 Cell division protein FtsA Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ;
cell division core of larger cluster
fig|6666666.229911.peg.974 CDS AEJQ02000022.1 110221 109454 -1 - 768 Cell division protein FtsQ Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ;
cell division core of larger cluster
fig|6666666.229911.peg.975 CDS AEJQ02000022.1 111147 110218 -3 - 930 D-alanine--D-alanine ligase (EC 6.3.2.4) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo;
cell division cluster containing FtsQ
fig|6666666.229911.peg.976 CDS AEJQ02000022.1 112590 111160 -3 - 1431 UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo;
cell division cluster containing FtsQ
fig|6666666.229911.peg.977 CDS AEJQ02000022.1 113725 112661 -1 - 1065 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) Peptidoglycan Biosynthesis;
cell division core of larger cluster
fig|6666666.229911.peg.978 CDS AEJQ02000022.1 114956 113766 -2 - 1191 Cell division protein FtsW Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ
fig|6666666.229911.peg.979 CDS AEJQ02000022.1 116275 114971 -1 - 1305 UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC 6.3.2.9) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo
fig|6666666.229911.peg.980 CDS AEJQ02000022.1 117387 116302 -3 - 1086 Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC 2.7.8.13) Peptidoglycan Biosynthesis
fig|6666666.229911.peg.981 CDS AEJQ02000022.1 118760 117381 -2 - 1380 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase (EC 6.3.2.10) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo
fig|6666666.229911.peg.982 CDS AEJQ02000022.1 120233 118767 -2 - 1467 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo
fig|6666666.229911.peg.983 CDS AEJQ02000022.1 122074 120251 -1 - 1824 Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129) 16S rRNA modification within P site of ribosome;
Bacterial Cell Division;
Bacterial Cytoskeleton;
CBSS-83331.1.peg.3039;
Peptidoglycan Biosynthesis
fig|6666666.229911.peg.984 CDS AEJQ02000022.1 122409 122092 -3 - 318 Cell division protein FtsL 16S rRNA modification within P site of ribosome;
Bacterial Cell Division;
Bacterial Cytoskeleton;
Stationary phase repair cluster
fig|6666666.229911.peg.985 CDS AEJQ02000022.1 123377 122409 -2 - 969 rRNA small subunit methyltransferase H 16S rRNA modification within P site of ribosome;
Bacterial Cell Division
fig|6666666.229911.peg.986 CDS AEJQ02000022.1 123945 123487 -3 - 459 Cell division protein MraZ 16S rRNA modification within P site of ribosome;
Bacterial Cell Division;
Bacterial Cytoskeleton
fig|6666666.229911.peg.987 CDS AEJQ02000022.1 125806 124208 -1 - 1599 Carbon starvation protein A Carbon Starvation
fig|6666666.229911.peg.988 CDS AEJQ02000022.1 125989 126111 1 + 123 hypothetical protein - none -
fig|6666666.229911.peg.989 CDS AEJQ02000022.1 127032 126346 -3 - 687 Arginine ABC transporter, permease protein ArtM Arginine and Ornithine Degradation
fig|6666666.229911.peg.990 CDS AEJQ02000022.1 127694 127032 -2 - 663 Arginine ABC transporter, permease protein ArtQ Arginine and Ornithine Degradation
fig|6666666.229911.peg.991 CDS AEJQ02000022.1 128418 127699 -3 - 720 Arginine ABC transporter, periplasmic arginine-binding protein ArtI Arginine and Ornithine Degradation
fig|6666666.229911.peg.992 CDS AEJQ02000022.1 129173 128439 -2 - 735 Arginine ABC transporter, ATP-binding protein ArtP Arginine and Ornithine Degradation
fig|6666666.229911.peg.993 CDS AEJQ02000022.1 129898 129314 -1 - 585 Phosphoheptose isomerase 1 (EC 5.3.1.-) Capsular heptose biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.229911.peg.994 CDS AEJQ02000022.1 133521 130000 -3 - 3522 Transcription-repair coupling factor Cell division-ribosomal stress proteins cluster;
Transcription factors bacterial;
Transcription repair cluster
fig|6666666.229911.peg.995 CDS AEJQ02000022.1 134086 133913 -1 - 174 hypothetical protein - none -
fig|6666666.229911.peg.996 CDS AEJQ02000022.1 136049 134124 -2 - 1926 Predicted P-loop ATPase fused to an acetyltransferase COG1444 tRNA modification Archaea;
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229911.peg.997 CDS AEJQ02000022.1 136754 136053 -2 - 702 unknown - none -
fig|6666666.229911.peg.998 CDS AEJQ02000022.1 137388 136924 -3 - 465 Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly CBSS-56780.10.peg.1536;
Glycyl-tRNA synthetase containing cluster;
tRNA-methylthiotransferase containing cluster
fig|6666666.229911.peg.999 CDS AEJQ02000022.1 138138 138365 3 + 228 Flp pilus assembly protein, pilin Flp Widespread colonization island
fig|6666666.229911.peg.1000 CDS AEJQ02000022.1 138785 139111 2 + 327 Type IV prepilin peptidase TadV/CpaA Widespread colonization island
fig|6666666.229911.peg.1001 CDS AEJQ02000022.1 139163 139987 2 + 825 Flp pilus assembly protein RcpC/CpaB Widespread colonization island
fig|6666666.229911.peg.1002 CDS AEJQ02000022.1 139989 141371 3 + 1383 Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly Widespread colonization island
fig|6666666.229911.peg.1003 CDS AEJQ02000022.1 141887 143011 2 + 1125 Type II/IV secretion system ATPase TadZ/CpaE, associated with Flp pilus assembly Widespread colonization island
fig|6666666.229911.peg.1004 CDS AEJQ02000022.1 143025 144305 3 + 1281 Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily Widespread colonization island
fig|6666666.229911.peg.1005 CDS AEJQ02000022.1 144305 145192 2 + 888 Flp pilus assembly protein TadB Widespread colonization island
fig|6666666.229911.peg.1006 CDS AEJQ02000022.1 145189 146055 1 + 867 Type II/IV secretion system protein TadC, associated with Flp pilus assembly Widespread colonization island
fig|6666666.229911.peg.1007 CDS AEJQ02000022.1 146045 146806 2 + 762 Flp pilus assembly protein TadD, contains TPR repeat Widespread colonization island
fig|6666666.229911.peg.1008 CDS AEJQ02000022.1 147727 148044 1 + 318 Flp pilus assembly surface protein TadF, ATP/GTP-binding motif Widespread colonization island
fig|6666666.229911.peg.1009 CDS AEJQ02000022.1 148060 149700 1 + 1641 Protein TadG, associated with Flp pilus assembly Widespread colonization island
fig|6666666.229911.peg.1010 CDS AEJQ02000022.1 150912 150676 -3 - 237 Mobile element protein - none -
fig|6666666.229911.peg.1011 CDS AEJQ02000022.1 151072 150956 -1 - 117 hypothetical protein - none -
fig|6666666.229911.peg.1012 CDS AEJQ02000022.1 153398 151896 -2 - 1503 Sodium-dependent transporter - none -
fig|6666666.229911.peg.1013 CDS AEJQ02000022.1 153814 154089 1 + 276 tRNA pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses;
tRNA modification Archaea;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229911.peg.1014 CDS AEJQ02000022.1 154230 154541 3 + 312 Membrane protein, MgtC/SapB family - none -
fig|6666666.229911.peg.1015 CDS AEJQ02000022.1 155482 154580 -1 - 903 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit - none -
fig|6666666.229911.peg.1016 CDS AEJQ02000022.1 157387 155528 -1 - 1860 Selenocysteine-specific translation elongation factor Selenocysteine metabolism
fig|6666666.229911.peg.1017 CDS AEJQ02000022.1 158778 157384 -3 - 1395 L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1) Selenocysteine metabolism
fig|6666666.229911.peg.1018 CDS AEJQ02000022.1 158922 160637 3 + 1716 Prolyl-tRNA synthetase (EC 6.1.1.15), bacterial type tRNA aminoacylation, Pro
fig|6666666.229911.peg.1019 CDS AEJQ02000022.1 160722 160910 3 + 189 Ethidium bromide-methyl viologen resistance protein EmrE - none -
fig|6666666.229911.peg.1020 CDS AEJQ02000022.1 160950 161204 3 + 255 YgfY COG2938 - none -
fig|6666666.229911.peg.1021 CDS AEJQ02000022.1 161337 161912 3 + 576 RNA polymerase sigma factor RpoE Transcription initiation, bacterial sigma factors
fig|6666666.229911.peg.1022 CDS AEJQ02000022.1 161951 162535 2 + 585 Sigma factor RpoE negative regulatory protein RseA Periplasmic Stress Response;
Transcription initiation, bacterial sigma factors
fig|6666666.229911.peg.1023 CDS AEJQ02000022.1 162618 163580 3 + 963 Sigma factor RpoE negative regulatory protein RseB precursor Periplasmic Stress Response;
Transcription initiation, bacterial sigma factors
fig|6666666.229911.peg.1024 CDS AEJQ02000022.1 163590 164027 3 + 438 Sigma factor RpoE regulatory protein RseC Transcription initiation, bacterial sigma factors
fig|6666666.229911.peg.1025 CDS AEJQ02000022.1 164108 164620 2 + 513 Molybdopterin-guanine dinucleotide biosynthesis protein MobB Molybdenum cofactor biosynthesis;
ar-431-EC Molybdopterin-guanine dinucleotide biosynthesis
fig|6666666.229911.peg.1026 CDS AEJQ02000022.1 164714 165469 2 + 756 Short chain dehydrogenase - none -
fig|6666666.229911.peg.1027 CDS AEJQ02000022.1 167009 165549 -2 - 1461 Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3) Dipeptidases (EC 3.4.13.-);
Recycling of Peptidoglycan Amino Acids
fig|6666666.229911.peg.1028 CDS AEJQ02000022.1 167124 167588 3 + 465 Xanthine-guanine phosphoribosyltransferase (EC 2.4.2.22) Purine conversions
fig|6666666.229911.peg.1029 CDS AEJQ02000022.1 170021 167679 -2 - 2343 Outer membrane protein Imp, required for envelope biogenesis / Organic solvent tolerance protein precursor Lipopolysaccharide assembly
fig|6666666.229911.peg.1030 CDS AEJQ02000022.1 170647 170087 -1 - 561 DNA-3-methyladenine glycosylase (EC 3.2.2.20) CBSS-326442.4.peg.1852;
DNA Repair Base Excision
fig|6666666.229911.peg.1031 CDS AEJQ02000022.1 170846 171451 2 + 606 probable integral membrane protein Cj0014c - none -
fig|6666666.229911.peg.1032 CDS AEJQ02000022.1 172754 171504 -2 - 1251 Diaminopimelate decarboxylase (EC 4.1.1.20) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229911.peg.1033 CDS AEJQ02000022.1 172891 172772 -1 - 120 hypothetical protein - none -
fig|6666666.229911.peg.1034 CDS AEJQ02000022.1 173014 173328 1 + 315 Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly Biogenesis of cytochrome c oxidases
fig|6666666.229911.peg.1035 CDS AEJQ02000022.1 173325 175214 3 + 1890 ATP-dependent DNA helicase RecQ DNA repair, bacterial RecFOR pathway
fig|6666666.229911.peg.1036 CDS AEJQ02000022.1 175311 177731 3 + 2421 DNA gyrase subunit B (EC 5.99.1.3) Cell Division Subsystem including YidCD;
DNA gyrase subunits;
DNA replication cluster 1;
DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.229911.peg.1037 CDS AEJQ02000022.1 178700 177786 -2 - 915 Pantothenate kinase (EC 2.7.1.33) Coenzyme A Biosynthesis
fig|6666666.229911.peg.1038 CDS AEJQ02000023.1 1504 77 -1 - 1428 Exodeoxyribonuclease I (EC 3.1.11.1) DNA Repair Base Excision
fig|6666666.229911.peg.1039 CDS AEJQ02000023.1 2387 1533 -2 - 855 Integral membrane protein - none -
fig|6666666.229911.peg.1040 CDS AEJQ02000023.1 3410 2463 -2 - 948 Chromosome partition protein MukB DNA structural proteins, bacterial;
MukBEF Chromosome Condensation
fig|6666666.229911.peg.1041 CDS AEJQ02000023.1 7688 6948 -2 - 741 Chromosome partition protein MukE DNA structural proteins, bacterial;
MukBEF Chromosome Condensation
fig|6666666.229911.peg.1042 CDS AEJQ02000023.1 11170 7709 -1 - 3462 Putative 2-acylglycerophosphoethanolamine acyltransferase / acyl-acyl carrier protein synthetase (EC 6.2.1.20) - none -
fig|6666666.229911.peg.1043 CDS AEJQ02000023.1 11322 11185 -3 - 138 hypothetical protein - none -
fig|6666666.229911.peg.1044 CDS AEJQ02000023.1 12678 11350 -3 - 1329 Chromosome partition protein MukF DNA structural proteins, bacterial;
MukBEF Chromosome Condensation
fig|6666666.229911.peg.1045 CDS AEJQ02000023.1 13737 12856 -3 - 882 Murein-DD-endopeptidase (EC 3.4.99.-) Peptidoglycan Biosynthesis
fig|6666666.229911.peg.1046 CDS AEJQ02000023.1 14493 13885 -3 - 609 lipoprotein HlpB - none -
fig|6666666.229911.peg.1047 CDS AEJQ02000023.1 14928 14641 -3 - 288 LSU ribosomal protein L25p Ribosome LSU bacterial;
Transcription repair cluster
fig|6666666.229911.peg.1048 CDS AEJQ02000023.1 15142 15747 1 + 606 DedA protein DedA family of inner membrane proteins;
Uptake of selenate and selenite
fig|6666666.229911.peg.1049 CDS AEJQ02000023.1 15701 15841 2 + 141 hypothetical protein - none -
fig|6666666.229911.peg.1050 CDS AEJQ02000023.1 18331 15866 -1 - 2466 Glycogen phosphorylase (EC 2.4.1.1) Glycogen metabolism;
Glycogen metabolism cluster;
Maltose and Maltodextrin Utilization
fig|6666666.229911.peg.1051 CDS AEJQ02000023.1 19894 18455 -1 - 1440 Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21) Glycogen metabolism;
Glycogen metabolism cluster
fig|6666666.229911.peg.1052 CDS AEJQ02000023.1 20115 19978 -3 - 138 Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27) Glycogen metabolism;
Glycogen metabolism cluster
fig|6666666.229911.peg.1053 CDS AEJQ02000023.1 21406 20096 -1 - 1311 Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27) Glycogen metabolism;
Glycogen metabolism cluster
fig|6666666.229911.peg.1054 CDS AEJQ02000023.1 23442 21433 -3 - 2010 Glycogen debranching enzyme (EC 3.2.1.-) Glycogen metabolism;
Glycogen metabolism cluster
fig|6666666.229911.peg.1055 CDS AEJQ02000023.1 25634 23439 -2 - 2196 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) Glycogen metabolism;
Glycogen metabolism cluster
fig|6666666.229911.peg.1056 CDS AEJQ02000023.1 26191 25631 -1 - 561 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) Glycogen metabolism;
Glycogen metabolism cluster;
Maltose and Maltodextrin Utilization;
Maltose utilization cluster
fig|6666666.229911.peg.1057 CDS AEJQ02000023.1 26725 26291 -1 - 435 YcgN (Fragment) CBSS-243277.1.peg.4359
fig|6666666.229911.peg.1058 CDS AEJQ02000023.1 28488 26797 -3 - 1692 Glutaminyl-tRNA synthetase (EC 6.1.1.18) tRNA aminoacylation, Glu and Gln
fig|6666666.229911.peg.1059 CDS AEJQ02000023.1 28689 29873 3 + 1185 Macrolide-specific efflux protein MacA Multidrug Resistance Efflux Pumps
fig|6666666.229911.peg.1060 CDS AEJQ02000023.1 29893 31827 1 + 1935 Macrolide export ATP-binding/permease protein MacB (EC 3.6.3.-) Multidrug Resistance Efflux Pumps
fig|6666666.229911.peg.1061 CDS AEJQ02000023.1 31904 33277 2 + 1374 RND efflux system, outer membrane lipoprotein CmeC Multidrug Resistance Efflux Pumps
fig|6666666.229911.peg.1062 CDS AEJQ02000023.1 34668 33550 -3 - 1119 Esterase/lipase - none -
fig|6666666.229911.peg.1063 CDS AEJQ02000023.1 34928 34665 -2 - 264 Esterase/lipase - none -
fig|6666666.229911.peg.1064 CDS AEJQ02000023.1 35826 35557 -3 - 270 hypothetical protein - none -
fig|6666666.229911.peg.1065 CDS AEJQ02000023.1 36393 38090 3 + 1698 hypothetical protein - none -
fig|6666666.229911.peg.1066 CDS AEJQ02000023.1 38464 38141 -1 - 324 Alkylphosphonate utilization operon protein PhnA - none -
fig|6666666.229911.peg.1067 CDS AEJQ02000023.1 39410 38547 -2 - 864 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229911.peg.1068 CDS AEJQ02000023.1 40132 39455 -1 - 678 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses;
Ribosome biogenesis bacterial;
tRNA modification Bacteria
fig|6666666.229911.peg.1069 CDS AEJQ02000023.1 40263 40913 3 + 651 Putative surface protein - none -
fig|6666666.229911.peg.1070 CDS AEJQ02000023.1 40992 41171 3 + 180 Putative surface protein - none -
fig|6666666.229911.peg.1071 CDS AEJQ02000023.1 41185 42642 1 + 1458 Cardiolipin synthetase (EC 2.7.8.-) Cardiolipin synthesis;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229911.peg.1072 CDS AEJQ02000023.1 42704 43345 2 + 642 Hypothetical, related to broad specificity phosphatases COG0406 CBSS-196164.1.peg.461
fig|6666666.229911.peg.1073 CDS AEJQ02000023.1 44748 43402 -3 - 1347 Dihydrofolate synthase (EC 6.3.2.12) @ Folylpolyglutamate synthase (EC 6.3.2.17) Folate Biosynthesis;
Folate Biosynthesis
fig|6666666.229911.peg.1074 CDS AEJQ02000023.1 45667 44771 -1 - 897 Acetyl-coenzyme A carboxyl transferase beta chain (EC 6.4.1.2) Fatty Acid Biosynthesis FASII
fig|6666666.229911.peg.1075 CDS AEJQ02000023.1 45892 46137 1 + 246 Exodeoxyribonuclease VII small subunit (EC 3.1.11.6) DNA repair, bacterial;
Purine salvage cluster
fig|6666666.229911.peg.1076 CDS AEJQ02000023.1 46148 47038 2 + 891 Octaprenyl diphosphate synthase (EC 2.5.1.90) / Dimethylallyltransferase (EC 2.5.1.1) / (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10) / Geranylgeranyl diphosphate synthase (EC 2.5.1.29) Isoprenoid Biosynthesis;
Isoprenoid Biosynthesis;
Isoprenoid Biosynthesis: Interconversions;
Isoprenoinds for Quinones;
Isoprenoinds for Quinones;
Isoprenoinds for Quinones;
Isoprenoinds for Quinones;
Polyprenyl Diphosphate Biosynthesis;
Polyprenyl Diphosphate Biosynthesis;
Polyprenyl Diphosphate Biosynthesis
fig|6666666.229911.peg.1077 CDS AEJQ02000023.1 47123 48973 2 + 1851 1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis;
Pyridoxin (Vitamin B6) Biosynthesis;
Thiamin biosynthesis
fig|6666666.229911.peg.1078 CDS AEJQ02000023.1 49539 49093 -3 - 447 Galactitol utilization operon repressor D-Tagatose and Galactitol Utilization
fig|6666666.229911.peg.1079 CDS AEJQ02000023.1 50950 49907 -1 - 1044 Galactitol-1-phosphate 5-dehydrogenase (EC 1.1.1.251) D-Tagatose and Galactitol Utilization
fig|6666666.229911.peg.1080 CDS AEJQ02000023.1 52337 50973 -2 - 1365 PTS system, galactitol-specific IIC component (EC 2.7.1.69) D-Tagatose and Galactitol Utilization
fig|6666666.229911.peg.1081 CDS AEJQ02000023.1 52627 52343 -1 - 285 PTS system, galactitol-specific IIB component (EC 2.7.1.69) D-Tagatose and Galactitol Utilization
fig|6666666.229911.peg.1082 CDS AEJQ02000023.1 53095 52646 -1 - 450 PTS system, galactitol-specific IIA component (EC 2.7.1.69) D-Tagatose and Galactitol Utilization
fig|6666666.229911.peg.1083 CDS AEJQ02000023.1 54365 53073 -2 - 1293 Tagatose-6-phosphate kinase GatZ (EC 2.7.1.144) D-Tagatose and Galactitol Utilization
fig|6666666.229911.peg.1084 CDS AEJQ02000023.1 55333 54383 -1 - 951 Tagatose 1,6-bisphosphate aldolase (EC 4.1.2.40) - none -
fig|6666666.229911.peg.1085 CDS AEJQ02000023.1 55424 55543 2 + 120 hypothetical protein - none -
fig|6666666.229911.peg.1086 CDS AEJQ02000023.1 56863 56976 1 + 114 hypothetical protein - none -
fig|6666666.229911.peg.1087 CDS AEJQ02000023.1 57378 57025 -3 - 354 LSU ribosomal protein L20p Mycobacterium virulence operon involved in protein synthesis (LSU ribosomal proteins);
Ribosome LSU bacterial
fig|6666666.229911.peg.1088 CDS AEJQ02000023.1 57629 57432 -2 - 198 LSU ribosomal protein L35p Mycobacterium virulence operon involved in protein synthesis (LSU ribosomal proteins);
Ribosome LSU bacterial
fig|6666666.229911.peg.1089 CDS AEJQ02000023.1 57709 57852 1 + 144 hypothetical protein - none -
fig|6666666.229911.peg.1090 CDS AEJQ02000023.1 58332 57853 -3 - 480 Translation initiation factor 3 Mycobacterium virulence operon involved in protein synthesis (LSU ribosomal proteins);
Translation initiation factors bacterial
fig|6666666.229911.peg.1091 CDS AEJQ02000023.1 58707 59486 3 + 780 Ferredoxin--NADP(+) reductase (EC 1.18.1.2) Biogenesis of cytochrome c oxidases
fig|6666666.229911.peg.1092 CDS AEJQ02000023.1 59601 59464 -3 - 138 hypothetical protein - none -
fig|6666666.229911.peg.1093 CDS AEJQ02000023.1 60280 59603 -1 - 678 Type III restriction-modification system restriction subunit (EC 3.1.21.5) - none -
fig|6666666.229911.peg.1094 CDS AEJQ02000023.1 60839 60285 -2 - 555 Type III restriction-modification system restriction subunit (EC 3.1.21.5) - none -
fig|6666666.229911.peg.1095 CDS AEJQ02000023.1 61170 60817 -3 - 354 Type III restriction-modification system methylation subunit (EC 2.1.1.72) Restriction-Modification System
fig|6666666.229911.peg.1096 CDS AEJQ02000023.1 63352 61421 -1 - 1932 Threonyl-tRNA synthetase (EC 6.1.1.3) tRNA aminoacylation, Thr
fig|6666666.229911.peg.1097 CDS AEJQ02000023.1 63593 64468 2 + 876 Ribulosamine/erythrulosamine 3-kinase potentially involved in protein deglycation Protein deglycation
fig|6666666.229911.peg.1098 CDS AEJQ02000023.1 65351 64527 -2 - 825 Outer membrane protein A precursor Osmoregulation
fig|6666666.229911.peg.1099 CDS AEJQ02000023.1 66599 65541 -2 - 1059 Possible protease sohB (EC 3.4.21.-) - none -
fig|6666666.229911.peg.1100 CDS AEJQ02000023.1 66792 67382 3 + 591 FMN-dependent NADH-azoreductase - none -
fig|6666666.229911.peg.1101 CDS AEJQ02000023.1 68822 67485 -2 - 1338 NADH dehydrogenase (EC 1.6.99.3) Respiratory dehydrogenases 1;
Riboflavin synthesis cluster
fig|6666666.229911.peg.1102 CDS AEJQ02000023.1 70588 68999 -1 - 1590 Glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Respiratory dehydrogenases 1
fig|6666666.229911.peg.1103 CDS AEJQ02000023.1 71706 70858 -3 - 849 rRNA small subunit methyltransferase I 16S rRNA modification within P site of ribosome;
CBSS-160492.1.peg.550;
Heat shock dnaK gene cluster extended
fig|6666666.229911.peg.1104 CDS AEJQ02000023.1 71783 73501 2 + 1719 LppC putative lipoprotein CBSS-160492.1.peg.550
fig|6666666.229911.peg.1105 CDS AEJQ02000023.1 73502 73870 2 + 369 Predicted endonuclease distantly related to archaeal Holliday junction resolvase CBSS-160492.1.peg.550
fig|6666666.229911.peg.1106 CDS AEJQ02000023.1 73883 74467 2 + 585 Phosphoheptose isomerase (EC 5.3.1.-) CBSS-160492.1.peg.550;
Capsular heptose biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.229911.peg.1107 CDS AEJQ02000023.1 74532 75119 3 + 588 21 kDa hemolysin precursor CBSS-160492.1.peg.550
fig|6666666.229911.peg.1108 CDS AEJQ02000023.1 75917 75225 -2 - 693 Carbonic anhydrase (EC 4.2.1.1) - none -
fig|6666666.229911.peg.1109 CDS AEJQ02000023.1 76133 77203 2 + 1071 Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11) / Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) Cluster Ytf and putative sugar transporter;
Peptide methionine sulfoxide reductase;
Peptide methionine sulfoxide reductase;
Putative sugar ABC transporter (ytf cluster)
fig|6666666.229911.peg.1110 CDS AEJQ02000023.1 77207 77848 2 + 642 Cytochrome c-type biogenesis protein CcdA homolog, associated with MetSO reductase Peptide methionine sulfoxide reductase
fig|6666666.229911.peg.1111 CDS AEJQ02000023.1 77863 78345 1 + 483 Thiol:disulfide oxidoreductase associated with MetSO reductase Peptide methionine sulfoxide reductase
fig|6666666.229911.peg.1112 CDS AEJQ02000023.1 79206 79481 3 + 276 FIG00697497: hypothetical protein - none -
fig|6666666.229911.peg.1113 CDS AEJQ02000023.1 79774 79517 -1 - 258 FIG00699498: hypothetical protein - none -
fig|6666666.229911.peg.1114 CDS AEJQ02000023.1 80609 81595 2 + 987 Fructose repressor FruR, LacI family Fructose utilization
fig|6666666.229911.peg.1115 CDS AEJQ02000023.1 82292 81579 -2 - 714 SanA protein - none -
fig|6666666.229911.peg.1116 CDS AEJQ02000023.1 82485 83588 3 + 1104 Homoserine O-acetyltransferase (EC 2.3.1.31) Methionine Biosynthesis
fig|6666666.229911.peg.1117 CDS AEJQ02000023.1 83894 84892 2 + 999 Purine nucleotide synthesis repressor Purine nucleotide synthesis regulator
fig|6666666.229911.peg.1118 CDS AEJQ02000023.1 85195 85329 1 + 135 hypothetical protein - none -
fig|6666666.229911.peg.1119 CDS AEJQ02000023.1 85363 85683 1 + 321 putative cytoplasmic protein - none -
fig|6666666.229911.peg.1120 CDS AEJQ02000023.1 86625 85798 -3 - 828 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229911.peg.1121 CDS AEJQ02000023.1 87681 86719 -3 - 963 Cys regulon transcriptional activator CysB Cysteine Biosynthesis;
LysR-family proteins in Escherichia coli
fig|6666666.229911.peg.1122 CDS AEJQ02000023.1 88680 87712 -3 - 969 Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70) RNA pseudouridine syntheses
fig|6666666.229911.peg.1123 CDS AEJQ02000023.1 89812 89306 -1 - 507 Chorismate mutase I (EC 5.4.99.5) / Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) Chorismate Synthesis;
Chorismate Synthesis;
Phenylalanine and Tyrosine Branches from Chorismate;
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229911.peg.1124 CDS AEJQ02000023.1 90125 89823 -2 - 303 Chorismate mutase I (EC 5.4.99.5) / Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) Chorismate Synthesis;
Chorismate Synthesis;
Phenylalanine and Tyrosine Branches from Chorismate;
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229911.peg.1125 CDS AEJQ02000023.1 90244 90080 -1 - 165 Chorismate mutase I (EC 5.4.99.5) / Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) Chorismate Synthesis;
Chorismate Synthesis;
Phenylalanine and Tyrosine Branches from Chorismate;
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229911.peg.1126 CDS AEJQ02000023.1 90429 90223 -3 - 207 Chorismate mutase I (EC 5.4.99.5) / Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) Chorismate Synthesis;
Chorismate Synthesis;
Phenylalanine and Tyrosine Branches from Chorismate;
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229911.peg.1127 CDS AEJQ02000023.1 92350 90470 -1 - 1881 Signal peptide peptidase SppA (EC 3.4.21.-) - none -
fig|6666666.229911.peg.1128 CDS AEJQ02000023.1 92474 93028 2 + 555 FIG002003: Protein YdjA - none -
fig|6666666.229911.peg.1129 CDS AEJQ02000023.1 94937 93456 -2 - 1482 Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4) 5-FCL-like protein;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate;
TCA Cycle;
TCA Cycle
fig|6666666.229911.peg.1130 CDS AEJQ02000023.1 96644 94974 -2 - 1671 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) 5-FCL-like protein;
Dehydrogenase complexes;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229911.peg.1131 CDS AEJQ02000023.1 99330 96673 -3 - 2658 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) 5-FCL-like protein;
Dehydrogenase complexes;
Methionine Degradation;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229911.peg.1132 CDS AEJQ02000023.1 99708 100583 3 + 876 Tellurite resistance protein TehB Tellurite resistance: Chromosomal determinants
fig|6666666.229911.peg.1133 CDS AEJQ02000023.1 103450 100736 -1 - 2715 Transcriptional activator of maltose regulon, MalT Maltose and Maltodextrin Utilization;
Maltose utilization cluster
fig|6666666.229911.peg.1134 CDS AEJQ02000023.1 103623 106013 3 + 2391 Maltodextrin phosphorylase (EC 2.4.1.1) Glycogen metabolism;
Maltose and Maltodextrin Utilization;
Maltose utilization cluster
fig|6666666.229911.peg.1135 CDS AEJQ02000023.1 106123 108198 1 + 2076 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) Glycogen metabolism;
Glycogen metabolism cluster;
Maltose and Maltodextrin Utilization;
Maltose utilization cluster
fig|6666666.229911.peg.1136 CDS AEJQ02000023.1 108220 108345 1 + 126 hypothetical protein - none -
fig|6666666.229911.peg.1137 CDS AEJQ02000023.1 108884 108342 -2 - 543 Colicin V production protein - none -
fig|6666666.229911.peg.1138 CDS AEJQ02000023.1 109506 109063 -3 - 444 FIG00638298: membrane protein YfbV - none -
fig|6666666.229911.peg.1139 CDS AEJQ02000023.1 109774 110976 1 + 1203 Acetate kinase (EC 2.7.2.1) Fermentations: Lactate;
Fermentations: Mixed acid;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229911.peg.1140 CDS AEJQ02000023.1 111046 113181 1 + 2136 Phosphate acetyltransferase (EC 2.3.1.8) Fermentations: Lactate;
Fermentations: Mixed acid;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229911.peg.1141 CDS AEJQ02000023.1 113528 113662 2 + 135 hypothetical protein - none -
fig|6666666.229911.peg.1142 CDS AEJQ02000023.1 113743 113889 1 + 147 hypothetical protein - none -
fig|6666666.229911.peg.1143 CDS AEJQ02000023.1 114460 113960 -1 - 501 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) Folate Biosynthesis;
Folate biosynthesis cluster
fig|6666666.229911.peg.1144 CDS AEJQ02000023.1 115880 114453 -2 - 1428 Poly(A) polymerase (EC 2.7.7.19) Polyadenylation bacterial
fig|6666666.229911.peg.1145 CDS AEJQ02000023.1 116471 116034 -2 - 438 C4-type zinc finger protein, DksA/TraR family - none -
fig|6666666.229911.peg.1146 CDS AEJQ02000023.1 116964 119192 3 + 2229 DNA internalization-related competence protein ComEC/Rec2 KDO2-Lipid A biosynthesis;
KDO2-Lipid A biosynthesis cluster 2
fig|6666666.229911.peg.1147 CDS AEJQ02000023.1 119239 120987 1 + 1749 Lipid A export ATP-binding/permease protein MsbA (EC 3.6.3.25) KDO2-Lipid A biosynthesis;
KDO2-Lipid A biosynthesis cluster 2
fig|6666666.229911.peg.1148 CDS AEJQ02000023.1 121006 121980 1 + 975 Tetraacyldisaccharide 4@1-kinase (EC 2.7.1.130) KDO2-Lipid A biosynthesis;
KDO2-Lipid A biosynthesis cluster 2
fig|6666666.229911.peg.1149 CDS AEJQ02000023.1 122002 122181 1 + 180 FIG002473: Protein YcaR in KDO2-Lipid A biosynthesis cluster Broadly distributed proteins not in subsystems;
KDO2-Lipid A biosynthesis cluster 2
fig|6666666.229911.peg.1150 CDS AEJQ02000023.1 122183 122956 2 + 774 3-deoxy-manno-octulosonate cytidylyltransferase (EC 2.7.7.38) KDO2-Lipid A biosynthesis;
KDO2-Lipid A biosynthesis cluster 2
fig|6666666.229911.peg.1151 CDS AEJQ02000023.1 123095 124924 2 + 1830 Excinuclease ABC subunit C DNA repair, UvrABC system
fig|6666666.229911.peg.1152 CDS AEJQ02000023.1 125120 125260 2 + 141 Autoinducer 2 (AI-2) ABC transport system, periplasmic AI-2 binding protein LsrB Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229911.peg.1153 CDS AEJQ02000023.1 126402 125311 -3 - 1092 Possible ABC transporter, periplasmic substrate X binding protein precursor ABC transporter of unknown substrate X
fig|6666666.229911.peg.1154 CDS AEJQ02000023.1 127273 126422 -1 - 852 Putative ABC transporter of substrate X, permease subunit II ABC transporter of unknown substrate X
fig|6666666.229911.peg.1155 CDS AEJQ02000023.1 128139 127270 -3 - 870 Putative ABC transporter of substrate X, permease subunit I ABC transporter of unknown substrate X
fig|6666666.229911.peg.1156 CDS AEJQ02000023.1 129089 128136 -2 - 954 Putative ABC transporter of substrate X, ATP-binding subunit ABC transporter of unknown substrate X
fig|6666666.229911.peg.1157 CDS AEJQ02000023.1 130553 129444 -2 - 1110 Selenide,water dikinase (EC 2.7.9.3) Selenocysteine metabolism;
tRNA modification Bacteria
fig|6666666.229911.peg.1158 CDS AEJQ02000023.1 131913 131065 -3 - 849 filamentation induced by cAMP protein Fic-like protein - none -
fig|6666666.229911.peg.1159 CDS AEJQ02000023.1 132381 132542 3 + 162 hypothetical protein - none -
fig|6666666.229911.peg.1160 CDS AEJQ02000023.1 132909 132757 -3 - 153 hypothetical protein - none -
fig|6666666.229911.peg.1161 CDS AEJQ02000023.1 134350 132926 -1 - 1425 NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) Phosphate metabolism
fig|6666666.229911.peg.1162 CDS AEJQ02000023.1 135896 134361 -2 - 1536 NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2) Phosphate metabolism
fig|6666666.229911.peg.1163 CDS AEJQ02000023.1 136135 136914 1 + 780 Sugar/maltose fermentation stimulation protein homolog Fermentations: Mixed acid
fig|6666666.229911.peg.1164 CDS AEJQ02000023.1 137162 138349 2 + 1188 Tyrosyl-tRNA synthetase (EC 6.1.1.1) tRNA aminoacylation, Tyr
fig|6666666.229911.peg.1165 CDS AEJQ02000023.1 138476 139087 2 + 612 hypothetical protein - none -
fig|6666666.229911.peg.1166 CDS AEJQ02000023.1 139186 139332 1 + 147 hypothetical protein - none -
fig|6666666.229911.peg.1167 CDS AEJQ02000023.1 140291 139374 -2 - 918 tRNA pseudouridine synthase B (EC 4.2.1.70) CBSS-138119.3.peg.2719;
RNA pseudouridine syntheses;
Riboflavin, FMN and FAD metabolism in plants;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229911.peg.1168 CDS AEJQ02000023.1 140677 140291 -1 - 387 Ribosome-binding factor A CBSS-138119.3.peg.2719;
NusA-TFII Cluster;
Translation initiation factors bacterial
fig|6666666.229911.peg.1169 CDS AEJQ02000023.1 141708 140764 -3 - 945 helicase domain protein - none -
fig|6666666.229911.peg.1170 CDS AEJQ02000023.1 143023 141686 -1 - 1338 helicase domain protein - none -
fig|6666666.229911.peg.1171 CDS AEJQ02000023.1 145032 143020 -3 - 2013 FIG00698532: hypothetical protein - none -
fig|6666666.229911.peg.1172 CDS AEJQ02000023.1 147890 145134 -2 - 2757 Type III restriction-modification system methylation subunit (EC 2.1.1.72) Restriction-Modification System
fig|6666666.229911.peg.1173 CDS AEJQ02000023.1 150667 148175 -1 - 2493 Translation initiation factor 2 CBSS-138119.3.peg.2719;
NusA-TFII Cluster;
Translation initiation factors bacterial
fig|6666666.229911.peg.1174 CDS AEJQ02000023.1 152179 150683 -1 - 1497 Transcription termination protein NusA NusA-TFII Cluster;
Transcription factors bacterial
fig|6666666.229911.peg.1175 CDS AEJQ02000023.1 152658 152203 -3 - 456 FIG000325: clustered with transcription termination protein NusA NusA-TFII Cluster;
Transcription factors bacterial
fig|6666666.229911.peg.1176 CDS AEJQ02000023.1 153097 154449 1 + 1353 C4-dicarboxylate transporter DcuC (TC 2.A.61.1.1) Citrate Metabolism, Transport, and Regulation
fig|6666666.229911.peg.1177 CDS AEJQ02000023.1 154479 154664 3 + 186 hypothetical protein - none -
fig|6666666.229911.peg.1178 CDS AEJQ02000023.1 154704 154976 3 + 273 DNA-damage-inducible protein J DNA repair, bacterial;
Toxin-antitoxin replicon stabilization systems
fig|6666666.229911.peg.1179 CDS AEJQ02000023.1 154988 155254 2 + 267 YafQ toxin protein Toxin-antitoxin replicon stabilization systems
fig|6666666.229911.peg.1180 CDS AEJQ02000023.1 155286 156845 3 + 1560 GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2) Purine conversions
fig|6666666.229911.peg.1181 CDS AEJQ02000023.1 157036 157869 1 + 834 Integrase - none -
fig|6666666.229911.peg.1182 CDS AEJQ02000023.1 158633 158022 -2 - 612 Phage tail fibers Phage tail fiber proteins
fig|6666666.229911.peg.1183 CDS AEJQ02000023.1 159799 158633 -1 - 1167 Phage tail fibers Phage tail fiber proteins
fig|6666666.229911.peg.1184 CDS AEJQ02000023.1 160045 159914 -1 - 132 hypothetical protein - none -
fig|6666666.229911.peg.1185 CDS AEJQ02000023.1 160300 160482 1 + 183 hypothetical protein - none -
fig|6666666.229911.peg.1186 CDS AEJQ02000023.1 160534 160953 1 + 420 hypothetical protein - none -
fig|6666666.229911.peg.1187 CDS AEJQ02000023.1 161338 160979 -1 - 360 phage-related protein - none -
fig|6666666.229911.peg.1188 CDS AEJQ02000023.1 161760 161335 -3 - 426 FIG00643583: hypothetical protein - none -
fig|6666666.229911.peg.1189 CDS AEJQ02000023.1 161955 161830 -3 - 126 hypothetical protein - none -
fig|6666666.229911.peg.1190 CDS AEJQ02000023.1 162299 162102 -2 - 198 Phage protein - none -
fig|6666666.229911.peg.1191 CDS AEJQ02000023.1 162703 162407 -1 - 297 Phage protein - none -
fig|6666666.229911.peg.1192 CDS AEJQ02000023.1 163415 162972 -2 - 444 Orf33 - none -
fig|6666666.229911.peg.1193 CDS AEJQ02000023.1 164021 164377 2 + 357 hypothetical protein - none -
fig|6666666.229911.peg.1194 CDS AEJQ02000023.1 164442 164666 3 + 225 hypothetical protein - none -
fig|6666666.229911.peg.1195 CDS AEJQ02000023.1 165110 165766 2 + 657 Phage Rha protein - none -
fig|6666666.229911.peg.1196 CDS AEJQ02000023.1 165852 166049 3 + 198 Phage protein - none -
fig|6666666.229911.peg.1197 CDS AEJQ02000023.1 166106 166231 2 + 126 hypothetical protein - none -
fig|6666666.229911.peg.1198 CDS AEJQ02000023.1 166250 166426 2 + 177 hypothetical protein - none -
fig|6666666.229911.peg.1199 CDS AEJQ02000023.1 167881 166931 -1 - 951 hypothetical protein - none -
fig|6666666.229911.peg.1200 CDS AEJQ02000023.1 168353 168075 -2 - 279 Transthyretin-like periplasmic protein - none -
fig|6666666.229911.peg.1201 CDS AEJQ02000023.1 169663 170616 1 + 954 Acetyl-coenzyme A carboxyl transferase alpha chain (EC 6.4.1.2) Fatty Acid Biosynthesis FASII
fig|6666666.229911.peg.1202 CDS AEJQ02000023.1 170679 171536 3 + 858 Pyridoxal kinase (EC 2.7.1.35) Pyridoxin (Vitamin B6) Biosynthesis
fig|6666666.229911.peg.1203 CDS AEJQ02000023.1 171568 172914 1 + 1347 tRNA(Ile)-lysidine synthetase (EC 6.3.4.19) Cell division-ribosomal stress proteins cluster;
Folate biosynthesis cluster;
tRNA modification Bacteria;
tRNA processing;
tRNAmodification position 34
fig|6666666.229911.peg.1204 CDS AEJQ02000023.1 174273 172942 -3 - 1332 Guanine-hypoxanthine permease Purine Utilization
fig|6666666.229911.peg.1205 CDS AEJQ02000023.1 174398 174246 -2 - 153 hypothetical protein - none -
fig|6666666.229911.peg.1206 CDS AEJQ02000023.1 174784 174398 -1 - 387 Integral membrane protein - none -
fig|6666666.229911.peg.1207 CDS AEJQ02000023.1 174978 175994 3 + 1017 UDP-glucose 4-epimerase (EC 5.1.3.2) Lactose and Galactose Uptake and Utilization;
Rhamnose containing glycans
fig|6666666.229911.peg.1208 CDS AEJQ02000023.1 176000 176341 2 + 342 [NiFe] hydrogenase nickel incorporation protein HybF NiFe hydrogenase maturation
fig|6666666.229911.peg.1209 CDS AEJQ02000023.1 176456 177637 2 + 1182 AmpG permease Recycling of Peptidoglycan Amino Acids
fig|6666666.229911.peg.1210 CDS AEJQ02000023.1 177770 178414 2 + 645 Adenylate kinase (EC 2.7.4.3) Purine conversions
fig|6666666.229911.peg.1211 CDS AEJQ02000023.1 180374 179151 -2 - 1224 N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family Chitin and N-acetylglucosamine utilization
fig|6666666.229911.peg.1212 CDS AEJQ02000023.1 181740 180436 -3 - 1305 Glutamyl-tRNA reductase (EC 1.2.1.70) A Gammaproteobacteria Cluster Relating to Translation;
Heme and Siroheme Biosynthesis
fig|6666666.229911.peg.1213 CDS AEJQ02000023.1 182626 181925 -1 - 702 Hydroxyacylglutathione hydrolase (EC 3.1.2.6) CBSS-228410.1.peg.134;
CBSS-342610.3.peg.1536;
Glutathione: Non-redox reactions;
Methylglyoxal Metabolism
fig|6666666.229911.peg.1214 CDS AEJQ02000023.1 182647 183345 1 + 699 FIG005121: SAM-dependent methyltransferase (EC 2.1.1.-) CBSS-228410.1.peg.134;
CBSS-342610.3.peg.1536;
Glutathione: Non-redox reactions
fig|6666666.229911.peg.1215 CDS AEJQ02000023.1 184896 183403 -3 - 1494 PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69) Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism;
Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229911.peg.1216 CDS AEJQ02000023.1 185422 185084 -1 - 339 FIG00904093: hypothetical protein - none -
fig|6666666.229911.peg.1217 CDS AEJQ02000023.1 185598 186803 3 + 1206 Mannose-6-phosphate isomerase (EC 5.3.1.8) Mannose Metabolism
fig|6666666.229911.peg.1218 CDS AEJQ02000023.1 186894 188657 3 + 1764 FIG00696060: hypothetical protein - none -
fig|6666666.229911.peg.1219 CDS AEJQ02000023.1 188828 189238 2 + 411 probable membrane protein YPO3565 - none -
fig|6666666.229911.peg.1220 CDS AEJQ02000023.1 189366 189196 -3 - 171 hypothetical protein - none -
fig|6666666.229911.peg.1221 CDS AEJQ02000023.1 189429 190811 3 + 1383 Outer membrane stress sensor protease DegQ, serine protease Periplasmic Stress Response;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229911.peg.1222 CDS AEJQ02000023.1 191913 190909 -3 - 1005 Biotin synthase (EC 2.8.1.6) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229911.peg.1223 CDS AEJQ02000023.1 192605 191958 -2 - 648 Thiamin ABC transporter, ATPase component / Thiamine transport ATP-binding protein thiQ Thiamin biosynthesis
fig|6666666.229911.peg.1224 CDS AEJQ02000023.1 194217 192589 -3 - 1629 Thiamin ABC transporter, transmembrane component Thiamin biosynthesis
fig|6666666.229911.peg.1225 CDS AEJQ02000023.1 195230 194226 -2 - 1005 Thiamin ABC transporter, substrate-binding component Thiamin biosynthesis
fig|6666666.229911.peg.1226 CDS AEJQ02000023.1 195652 195428 -1 - 225 Phosphomethylpyrimidine kinase (EC 2.7.4.7) 5-FCL-like protein;
Thiamin biosynthesis
fig|6666666.229911.peg.1227 CDS AEJQ02000023.1 196845 196552 -3 - 294 CRISPR-associated protein Cas2 CRISPRs
fig|6666666.229911.peg.1228 CDS AEJQ02000023.1 197793 196849 -3 - 945 CRISPR-associated protein Cas1 CRISPRs
fig|6666666.229911.peg.1229 CDS AEJQ02000023.1 199670 197916 -2 - 1755 predicted ATP-dependent endonuclease, OLD family - none -
fig|6666666.229911.peg.1230 CDS AEJQ02000023.1 200337 199660 -3 - 678 CRISPR-associated RecB family exonuclease Cas4 / CRISPR-associated protein Cas1 CRISPRs
fig|6666666.229911.peg.1231 CDS AEJQ02000023.1 201036 200581 -3 - 456 CRISPR-associated protein, Csd2/Csh2 family - none -
fig|6666666.229911.peg.1232 CDS AEJQ02000023.1 202699 200999 -1 - 1701 CRISPR-associated protein Cas3@1@1 CRISPRs
fig|6666666.229911.peg.1233 CDS AEJQ02000023.1 203121 206054 3 + 2934 Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42) Ammonia assimilation;
CBSS-316057.3.peg.3521
fig|6666666.229911.peg.1234 CDS AEJQ02000023.1 206389 206090 -1 - 300 Putative transcriptional regulator - none -
fig|6666666.229911.peg.1235 CDS AEJQ02000023.1 206736 206386 -3 - 351 YPPCP.09C homologue - none -
fig|6666666.229911.peg.1236 CDS AEJQ02000023.1 208507 206924 -1 - 1584 Peptide chain release factor 3 Translation termination factors bacterial
fig|6666666.229911.peg.1237 CDS AEJQ02000023.1 208864 209691 1 + 828 Nucleoside-diphosphate-sugar epimerases - none -
fig|6666666.229911.peg.1238 CDS AEJQ02000023.1 209786 211123 2 + 1338 Argininosuccinate synthase (EC 6.3.4.5) - none -
fig|6666666.229911.peg.1239 CDS AEJQ02000023.1 211313 211558 2 + 246 FIG00696862: hypothetical protein - none -
fig|6666666.229911.peg.1240 CDS AEJQ02000023.1 211791 213560 3 + 1770 Gamma-glutamyltranspeptidase (EC 2.3.2.2) Glutathione: Biosynthesis and gamma-glutamyl cycle
fig|6666666.229911.peg.1241 CDS AEJQ02000023.1 215039 213645 -2 - 1395 Sensory histidine kinase QseC Orphan regulatory proteins
fig|6666666.229911.peg.1242 CDS AEJQ02000023.1 215127 215008 -3 - 120 Two-component system response regulator QseB Orphan regulatory proteins
fig|6666666.229911.peg.1243 CDS AEJQ02000023.1 216460 215612 -1 - 849 FIG00697497: hypothetical protein - none -
fig|6666666.229911.peg.1244 CDS AEJQ02000023.1 219415 216635 -1 - 2781 FIG00696772: hypothetical protein - none -
fig|6666666.229911.peg.1245 CDS AEJQ02000023.1 219591 219415 -3 - 177 hypothetical protein - none -
fig|6666666.229911.peg.1246 CDS AEJQ02000023.1 219870 219625 -3 - 246 hypothetical protein - none -
fig|6666666.229911.peg.1247 CDS AEJQ02000023.1 220215 219883 -3 - 333 Phage FAD/FMN-containing dehydrogenase - none -
fig|6666666.229911.peg.1248 CDS AEJQ02000023.1 220765 220349 -1 - 417 Protein ygiW precursor - none -
fig|6666666.229911.peg.1249 CDS AEJQ02000024.1 816 304 -3 - 513 Protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-) Heme and Siroheme Biosynthesis;
Transport system clustering with HemG
fig|6666666.229911.peg.1250 CDS AEJQ02000024.1 2279 816 -2 - 1464 Potassium uptake protein TrkH Hyperosmotic potassium uptake;
Potassium homeostasis;
Potassium homeostasis;
Transport system clustering with HemG
fig|6666666.229911.peg.1251 CDS AEJQ02000024.1 2817 2545 -3 - 273 FIG000605: protein co-occurring with transport systems (COG1739) Transport system clustering with HemG
fig|6666666.229911.peg.1252 CDS AEJQ02000024.1 2905 3150 1 + 246 tRNA 5-methylaminomethyl-2-thiouridine synthase TusA mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.229911.peg.1253 CDS AEJQ02000024.1 3470 4741 2 + 1272 Nicotinamide-nucleotide adenylyltransferase, NadR family (EC 2.7.7.1) / Ribosylnicotinamide kinase (EC 2.7.1.22) NAD and NADP cofactor biosynthesis global;
NAD and NADP cofactor biosynthesis global
fig|6666666.229911.peg.1254 CDS AEJQ02000024.1 4757 5440 2 + 684 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases - none -
fig|6666666.229911.peg.1255 CDS AEJQ02000024.1 5634 6797 3 + 1164 Tyrosine-specific transport protein - none -
fig|6666666.229911.peg.1256 CDS AEJQ02000025.1 1591 518 -1 - 1074 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) - none -
fig|6666666.229911.peg.1257 CDS AEJQ02000025.1 1720 3003 1 + 1284 Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8) CBSS-196164.1.peg.461;
Heme and Siroheme Biosynthesis
fig|6666666.229911.peg.1258 CDS AEJQ02000025.1 5670 3079 -3 - 2592 [Protein-PII] uridylyltransferase (EC 2.7.7.59) Ammonia assimilation;
CBSS-312309.3.peg.1965
fig|6666666.229911.peg.1259 CDS AEJQ02000025.1 6536 5736 -2 - 801 Methionine aminopeptidase (EC 3.4.11.18) CBSS-312309.3.peg.1965;
Translation termination factors bacterial
fig|6666666.229911.peg.1260 CDS AEJQ02000025.1 6670 7011 1 + 342 probable iron binding protein from the HesB_IscA_SufA family - none -
fig|6666666.229911.peg.1261 CDS AEJQ02000025.1 7013 7228 2 + 216 hypothetical protein - none -
fig|6666666.229911.peg.1262 CDS AEJQ02000025.1 7274 9667 2 + 2394 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) DNA uptake cluster;
Peptidoglycan Biosynthesis;
Type IV pilus
fig|6666666.229911.peg.1263 CDS AEJQ02000025.1 9966 11873 3 + 1908 High-affinity Fe2+/Pb2+ permease precursor Iron transport system including ABC transporter
fig|6666666.229911.peg.1264 CDS AEJQ02000025.1 11916 12437 3 + 522 Periplasmic protein p19 involved in high-affinity Fe2+ transport Iron transport system including ABC transporter
fig|6666666.229911.peg.1265 CDS AEJQ02000025.1 12576 14006 3 + 1431 Fe2+ ABC transporter, substrate binding protein Iron transport system including ABC transporter
fig|6666666.229911.peg.1266 CDS AEJQ02000025.1 14009 15334 2 + 1326 Cell division protein FtsX Bacterial Cell Division
fig|6666666.229911.peg.1267 CDS AEJQ02000025.1 15345 16460 3 + 1116 Cell division protein FtsX Bacterial Cell Division
fig|6666666.229911.peg.1268 CDS AEJQ02000025.1 16462 17133 1 + 672 Fe2+ ABC transporter, ATP-binding subunit Iron transport system including ABC transporter
fig|6666666.229911.peg.1269 CDS AEJQ02000025.1 17123 17614 2 + 492 Possible periplasmic thiredoxin Iron transport system including ABC transporter
fig|6666666.229911.peg.1270 CDS AEJQ02000025.1 17621 17932 2 + 312 Cytochrome C553 (soluble cytochrome f) Iron transport system including ABC transporter;
Soluble cytochromes and functionally related electron carriers
fig|6666666.229911.peg.1271 CDS AEJQ02000025.1 18021 18143 3 + 123 hypothetical protein - none -
fig|6666666.229911.peg.1272 CDS AEJQ02000025.1 18260 18925 2 + 666 Phosphoglycolate phosphatase (EC 3.1.3.18) 2-phosphoglycolate salvage;
Glycolate, glyoxylate interconversions
fig|6666666.229911.peg.1273 CDS AEJQ02000025.1 19089 18931 -3 - 159 hypothetical protein - none -
fig|6666666.229911.peg.1274 CDS AEJQ02000025.1 20265 19117 -3 - 1149 Mobile element protein - none -
fig|6666666.229911.peg.1275 CDS AEJQ02000025.1 21673 20672 -1 - 1002 Related to membrane proteins - none -
fig|6666666.229911.peg.1276 CDS AEJQ02000025.1 25772 21723 -2 - 4050 HrpA-like helicases - none -
fig|6666666.229911.peg.1277 CDS AEJQ02000025.1 26158 25769 -1 - 390 COG2363 - none -
fig|6666666.229911.peg.1278 CDS AEJQ02000025.1 26611 26159 -1 - 453 putative membrane protein - none -
fig|6666666.229911.peg.1279 CDS AEJQ02000025.1 26613 26726 3 + 114 hypothetical protein - none -
fig|6666666.229911.peg.1280 CDS AEJQ02000025.1 27065 26736 -2 - 330 Glutaredoxin-related protein Glutaredoxins
fig|6666666.229911.peg.1281 CDS AEJQ02000025.1 28447 27407 -1 - 1041 Outer membrane protein A precursor Osmoregulation
fig|6666666.229911.peg.1282 CDS AEJQ02000025.1 28932 31985 3 + 3054 Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD Glycolate, glyoxylate interconversions
fig|6666666.229911.peg.1283 CDS AEJQ02000025.1 31995 32417 3 + 423 FIG017415: ydiI hotdog fold superfamily - none -
fig|6666666.229911.peg.1284 CDS AEJQ02000025.1 32410 33474 1 + 1065 Ferrochelatase, protoheme ferro-lyase (EC 4.99.1.1) Heme and Siroheme Biosynthesis
fig|6666666.229911.peg.1285 CDS AEJQ02000025.1 33515 34015 2 + 501 Thiol peroxidase, Tpx-type (EC 1.11.1.15) Thioredoxin-disulfide reductase
fig|6666666.229911.peg.1286 CDS AEJQ02000025.1 35365 34220 -1 - 1146 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism
fig|6666666.229911.peg.1287 CDS AEJQ02000025.1 36224 35421 -2 - 804 Glucosamine-6-phosphate deaminase (EC 3.5.99.6) Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism
fig|6666666.229911.peg.1288 CDS AEJQ02000025.1 37257 36379 -3 - 879 N-acetylneuraminate lyase (EC 4.1.3.3) Sialic Acid Metabolism
fig|6666666.229911.peg.1289 CDS AEJQ02000025.1 38136 37267 -3 - 870 Sialic acid utilization regulator, RpiR family Sialic Acid Metabolism
fig|6666666.229911.peg.1290 CDS AEJQ02000025.1 39033 38146 -3 - 888 N-acetylmannosamine kinase (EC 2.7.1.60) Sialic Acid Metabolism
fig|6666666.229911.peg.1291 CDS AEJQ02000025.1 39748 39047 -1 - 702 N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9) Sialic Acid Metabolism
fig|6666666.229911.peg.1292 CDS AEJQ02000025.1 39990 40976 3 + 987 TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein Sialic Acid Metabolism
fig|6666666.229911.peg.1293 CDS AEJQ02000025.1 41040 42890 3 + 1851 TRAP-type transport system, large permease component, predicted N-acetylneuraminate transporter / TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229911.peg.1294 CDS AEJQ02000025.1 43029 44159 3 + 1131 Sialic acid-induced transmembrane protein YjhT(NanM), possible mutarotase Sialic Acid Metabolism
fig|6666666.229911.peg.1295 CDS AEJQ02000025.1 44408 45874 2 + 1467 PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69) Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism;
Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229911.peg.1296 CDS AEJQ02000025.1 47620 46550 -1 - 1071 Outer membrane protein A precursor Osmoregulation
fig|6666666.229911.peg.1297 CDS AEJQ02000025.1 49889 47847 -2 - 2043 Excinuclease ABC subunit B DNA repair, UvrABC system
fig|6666666.229911.peg.1298 CDS AEJQ02000025.1 51532 50501 -1 - 1032 putative membrane protein - none -
fig|6666666.229911.peg.1299 CDS AEJQ02000025.1 52212 51547 -3 - 666 putative exported protein - none -
fig|6666666.229911.peg.1300 CDS AEJQ02000025.1 52615 54261 1 + 1647 ABC transporter ATP-binding protein - none -
fig|6666666.229911.peg.1301 CDS AEJQ02000025.1 55252 54365 -1 - 888 putative adhesin/invasin - none -
fig|6666666.229911.peg.1302 CDS AEJQ02000025.1 55755 57653 3 + 1899 Topoisomerase IV subunit B (EC 5.99.1.-) DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.229911.peg.1303 CDS AEJQ02000025.1 58061 58237 2 + 177 hypothetical protein - none -
fig|6666666.229911.peg.1304 CDS AEJQ02000025.1 58245 60500 3 + 2256 Topoisomerase IV subunit A (EC 5.99.1.-) DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.229911.peg.1305 CDS AEJQ02000025.1 60784 61395 1 + 612 Glutathione S-transferase (EC 2.5.1.18) Glutathione: Non-redox reactions
fig|6666666.229911.peg.1306 CDS AEJQ02000025.1 62156 61446 -2 - 711 hypothetical protein - none -
fig|6666666.229911.peg.1307 CDS AEJQ02000025.1 62878 62162 -1 - 717 FIG00904286: hypothetical protein - none -
fig|6666666.229911.peg.1308 CDS AEJQ02000025.1 62980 63333 1 + 354 Bona fide RidA/YjgF/TdcF/RutC subgroup - none -
fig|6666666.229911.peg.1309 CDS AEJQ02000025.1 64919 63375 -2 - 1545 hypothetical protein - none -
fig|6666666.229911.peg.1310 CDS AEJQ02000025.1 65875 64922 -1 - 954 Glycosyltransferase - none -
fig|6666666.229911.peg.1311 CDS AEJQ02000025.1 66909 66019 -3 - 891 hypothetical protein - none -
fig|6666666.229911.peg.1312 CDS AEJQ02000025.1 68957 66912 -2 - 2046 DNA polymerase III subunits gamma and tau (EC 2.7.7.7) DNA processing cluster
fig|6666666.229911.peg.1313 CDS AEJQ02000025.1 69601 68990 -1 - 612 Adenine phosphoribosyltransferase (EC 2.4.2.7) Purine conversions;
cAMP signaling in bacteria
fig|6666666.229911.peg.1314 CDS AEJQ02000025.1 70579 69623 -1 - 957 Lipid A biosynthesis (KDO) 2-(lauroyl)-lipid IVA acyltransferase (EC 2.3.1.-) KDO2-Lipid A biosynthesis
fig|6666666.229911.peg.1315 CDS AEJQ02000025.1 71462 70695 -2 - 768 Putative membrane protein YfcA - none -
fig|6666666.229911.peg.1316 CDS AEJQ02000025.1 72338 71466 -2 - 873 Murein endopeptidase - none -
fig|6666666.229911.peg.1317 CDS AEJQ02000025.1 73433 72360 -2 - 1074 Chorismate synthase (EC 4.2.3.5) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229911.peg.1318 CDS AEJQ02000025.1 76778 73455 -2 - 3324 Potassium efflux system KefA protein / Small-conductance mechanosensitive channel Potassium homeostasis
fig|6666666.229911.peg.1319 CDS AEJQ02000025.1 78202 76787 -1 - 1416 O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229911.peg.1320 CDS AEJQ02000025.1 78825 78208 -3 - 618 SeqA protein, negative modulator of initiation of replication - none -
fig|6666666.229911.peg.1321 CDS AEJQ02000025.1 78912 79712 3 + 801 Esterase ybfF (EC 3.1.-.-) - none -
fig|6666666.229911.peg.1322 CDS AEJQ02000025.1 80132 80656 2 + 525 Flavodoxin 1 Flavodoxin
fig|6666666.229911.peg.1323 CDS AEJQ02000025.1 80675 81115 2 + 441 Ferric uptake regulation protein FUR Bacterial RNA-metabolizing Zn-dependent hydrolases;
Oxidative stress
fig|6666666.229911.peg.1324 CDS AEJQ02000025.1 81283 83946 1 + 2664 DNA gyrase subunit A (EC 5.99.1.3) Cell Division Subsystem including YidCD;
DNA gyrase subunits;
DNA replication cluster 1;
DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.229911.peg.1325 CDS AEJQ02000025.1 84014 84364 2 + 351 FIG00782386: hypothetical protein - none -
fig|6666666.229911.peg.1326 CDS AEJQ02000025.1 84700 84398 -1 - 303 Translation initiation factor SUI1-related protein Translation initiation factors bacterial
fig|6666666.229911.peg.1327 CDS AEJQ02000025.1 85413 84721 -3 - 693 Orotidine 5@1-phosphate decarboxylase (EC 4.1.1.23) De Novo Pyrimidine Synthesis;
Riboflavin synthesis cluster
fig|6666666.229911.peg.1328 CDS AEJQ02000025.1 86633 85443 -2 - 1191 Heat shock (predicted periplasmic) protein YciM, precursor Osmotic stress cluster
fig|6666666.229911.peg.1329 CDS AEJQ02000025.1 86929 86633 -1 - 297 Inner membrane protein yciS - none -
fig|6666666.229911.peg.1330 CDS AEJQ02000025.1 87315 87028 -3 - 288 Integration host factor beta subunit DNA structural proteins, bacterial
fig|6666666.229911.peg.1331 CDS AEJQ02000025.1 89023 87377 -1 - 1647 SSU ribosomal protein S1p Cell division-ribosomal stress proteins cluster;
Ribosome SSU bacterial
fig|6666666.229911.peg.1332 CDS AEJQ02000025.1 89798 89121 -2 - 678 Cytidylate kinase (EC 2.7.4.25) pyrimidine conversions
fig|6666666.229911.peg.1333 CDS AEJQ02000025.1 90684 89791 -3 - 894 Membrane protein LAPB - none -
fig|6666666.229911.peg.1334 CDS AEJQ02000025.1 90977 93343 2 + 2367 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229911.peg.1335 CDS AEJQ02000025.1 93421 96195 1 + 2775 Probable zinc protease pqqL (EC 3.4.99.-) - none -
fig|6666666.229911.peg.1336 CDS AEJQ02000025.1 96594 96262 -3 - 333 Branched-chain amino acid transport protein azlD - none -
fig|6666666.229911.peg.1337 CDS AEJQ02000025.1 97323 96595 -3 - 729 Branched-chain amino acid transport protein AzlC - none -
fig|6666666.229911.peg.1338 CDS AEJQ02000025.1 98260 97328 -1 - 933 Transcriptional activator MetR LysR-family proteins in Escherichia coli;
LysR-family proteins in Salmonella enterica Typhimurium;
Methionine Biosynthesis
fig|6666666.229911.peg.1339 CDS AEJQ02000025.1 98560 100833 1 + 2274 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) Methionine Biosynthesis
fig|6666666.229911.peg.1340 CDS AEJQ02000025.1 101795 101163 -2 - 633 Superfamily II DNA/RNA helicases, SNF2 family - none -
fig|6666666.229911.peg.1341 CDS AEJQ02000025.1 102131 101814 -2 - 318 helicase (Snf2/Rad54 family) - none -
fig|6666666.229911.peg.1342 CDS AEJQ02000025.1 103850 102621 -2 - 1230 helicase (Snf2/Rad54 family) - none -
fig|6666666.229911.peg.1343 CDS AEJQ02000025.1 104246 104067 -2 - 180 CRISPR-associated helicase Cas3 CRISPRs
fig|6666666.229911.peg.1344 CDS AEJQ02000025.1 104643 104789 3 + 147 hypothetical protein - none -
fig|6666666.229911.peg.1345 CDS AEJQ02000025.1 104800 105462 1 + 663 Putative TEGT family carrier/transport protein CBSS-326442.4.peg.1852
fig|6666666.229911.peg.1346 CDS AEJQ02000025.1 105482 105877 2 + 396 tRNA 2-thiouridine synthesizing protein E (EC 2.8.1.-) CBSS-326442.4.peg.1852;
Lipoic acid synthesis cluster;
Sulfite reduction-associated complex DsrMKJOP and co-clustering genes
fig|6666666.229911.peg.1347 CDS AEJQ02000025.1 105976 106857 1 + 882 Manganese ABC transporter, periplasmic-binding protein SitA - none -
fig|6666666.229911.peg.1348 CDS AEJQ02000025.1 106857 107747 3 + 891 Manganese ABC transporter, ATP-binding protein SitB - none -
fig|6666666.229911.peg.1349 CDS AEJQ02000025.1 107747 108604 2 + 858 Manganese ABC transporter, inner membrane permease protein SitC - none -
fig|6666666.229911.peg.1350 CDS AEJQ02000025.1 108601 109449 1 + 849 Manganese ABC transporter, inner membrane permease protein SitD - none -
fig|6666666.229911.peg.1351 CDS AEJQ02000025.1 109696 109424 -1 - 273 Acylphosphate phosphohydrolase (EC 3.6.1.7), putative Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229911.peg.1352 CDS AEJQ02000025.1 109841 110515 2 + 675 UPF0319 protein YccT precursor CBSS-83333.1.peg.946
fig|6666666.229911.peg.1353 CDS AEJQ02000025.1 110578 110967 1 + 390 Methylglyoxal synthase (EC 4.2.3.3) CBSS-83333.1.peg.946;
Methylglyoxal Metabolism
fig|6666666.229911.peg.1354 CDS AEJQ02000025.1 111028 111501 1 + 474 Inner membrane protein YccF CBSS-83333.1.peg.946
fig|6666666.229911.peg.1355 CDS AEJQ02000025.1 111510 113651 3 + 2142 Putative efflux (PET) family inner membrane protein YccS CBSS-83333.1.peg.946
fig|6666666.229911.peg.1356 CDS AEJQ02000025.1 114154 113648 -1 - 507 FIG001674: hypothetical protein - none -
fig|6666666.229911.peg.1357 CDS AEJQ02000025.1 114217 115167 1 + 951 Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p - none -
fig|6666666.229911.peg.1358 CDS AEJQ02000025.1 116278 115334 -1 - 945 Transketolase, C-terminal section (EC 2.2.1.1) Pentose phosphate pathway
fig|6666666.229911.peg.1359 CDS AEJQ02000025.1 117092 116268 -2 - 825 Transketolase, N-terminal section (EC 2.2.1.1) Pentose phosphate pathway
fig|6666666.229911.peg.1360 CDS AEJQ02000025.1 118310 117102 -2 - 1209 FIG00732228: membrane protein - none -
fig|6666666.229911.peg.1361 CDS AEJQ02000025.1 118456 118319 -1 - 138 FIG00732228: membrane protein - none -
fig|6666666.229911.peg.1362 CDS AEJQ02000025.1 118742 118473 -2 - 270 Putative sugar phosphotransferase component II B - none -
fig|6666666.229911.peg.1363 CDS AEJQ02000025.1 119971 118973 -1 - 999 FIG00781545: hypothetical protein - none -
fig|6666666.229911.peg.1364 CDS AEJQ02000025.1 122175 120232 -3 - 1944 ABC transporter ATP-binding protein - none -
fig|6666666.229911.peg.1365 CDS AEJQ02000025.1 123569 122217 -2 - 1353 Putative dNTP triphosphohydrolase, associated with nucleotidase YfbR Purine conversions;
dNTP triphosphohydrolase protein family
fig|6666666.229911.peg.1366 CDS AEJQ02000025.1 124263 123571 -3 - 693 LrgA-associated membrane protein LrgB Murein hydrolase regulation and cell death
fig|6666666.229911.peg.1367 CDS AEJQ02000025.1 124622 124263 -2 - 360 Antiholin-like protein LrgA Murein hydrolase regulation and cell death
fig|6666666.229911.peg.1368 CDS AEJQ02000025.1 125092 125592 1 + 501 Micrococcal nuclease (thermonuclease) homologs - none -
fig|6666666.229911.peg.1369 CDS AEJQ02000025.1 125598 126794 3 + 1197 Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA Alanine biosynthesis;
mnm5U34 biosynthesis bacteria;
tRNA modification Archaea
fig|6666666.229911.peg.1370 CDS AEJQ02000025.1 126791 127171 2 + 381 Cysteine desulfurase CsdA-CsdE, sulfur acceptor protein CsdE - none -
fig|6666666.229911.peg.1371 CDS AEJQ02000025.1 128645 127215 -2 - 1431 ADP-heptose synthase (EC 2.7.-.-) / D-glycero-beta-D-manno-heptose 7-phosphate kinase LOS core oligosaccharide biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.229911.peg.1372 CDS AEJQ02000025.1 128759 129694 2 + 936 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) KDO2-Lipid A biosynthesis
fig|6666666.229911.peg.1373 CDS AEJQ02000025.1 130315 129752 -1 - 564 Putative oxidoreductase component of anaerobic dehydrogenases; Functional role page for Chaperone protein TorD - none -
fig|6666666.229911.peg.1374 CDS AEJQ02000025.1 130926 130315 -3 - 612 NAD(P)H oxidoreductase YRKL (EC 1.6.99.-) @ Putative NADPH-quinone reductase (modulator of drug activity B) @ Flavodoxin 2 Flavodoxin;
Flavodoxin
fig|6666666.229911.peg.1375 CDS AEJQ02000025.1 131381 130935 -2 - 447 Putative activity regulator of membrane protease YbbK - none -
fig|6666666.229911.peg.1376 CDS AEJQ02000025.1 132331 131405 -1 - 927 Putative stomatin/prohibitin-family membrane protease subunit YbbK - none -
fig|6666666.229911.peg.1377 CDS AEJQ02000025.1 133674 132853 -3 - 822 probable glucanotransferase (endo alpha-1,4 polygalactosaminidase related protein) - none -
fig|6666666.229911.peg.1378 CDS AEJQ02000025.1 135476 136858 2 + 1383 Cytochrome c551 peroxidase (EC 1.11.1.5) Protection from Reactive Oxygen Species
fig|6666666.229911.peg.1379 CDS AEJQ02000025.1 138103 136946 -1 - 1158 Ribonuclease D (EC 3.1.26.3) tRNA processing
fig|6666666.229911.peg.1380 CDS AEJQ02000025.1 139862 138186 -2 - 1677 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) Biotin biosynthesis;
Biotin synthesis cluster
fig|6666666.229911.peg.1381 CDS AEJQ02000025.1 140462 139905 -2 - 558 Starvation lipoprotein Slp paralog Carbon Starvation
fig|6666666.229911.peg.1382 CDS AEJQ02000025.1 141216 140494 -3 - 723 TsaB protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Ribosome biogenesis bacterial;
YgjD and YeaZ;
YjeE
fig|6666666.229911.peg.1383 CDS AEJQ02000025.1 143156 141219 -2 - 1938 DinG family ATP-dependent helicase YoaA DNA repair, bacterial DinG and relatives
fig|6666666.229911.peg.1384 CDS AEJQ02000025.1 143232 144050 3 + 819 Aldose 1-epimerase - none -
fig|6666666.229911.peg.1385 CDS AEJQ02000025.1 144460 145317 1 + 858 FIG000875: Thioredoxin domain-containing protein EC-YbbN - none -
fig|6666666.229911.peg.1386 CDS AEJQ02000025.1 145377 146330 3 + 954 Thioredoxin reductase (EC 1.8.1.9) Thioredoxin-disulfide reductase;
pyrimidine conversions
fig|6666666.229911.peg.1387 CDS AEJQ02000025.1 146436 148199 3 + 1764 Transport ATP-binding protein CydD Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229911.peg.1388 CDS AEJQ02000025.1 148199 149932 2 + 1734 Transport ATP-binding protein CydC Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229911.peg.1389 CDS AEJQ02000025.1 150196 151062 1 + 867 Acyl-CoA thioesterase II (EC 3.1.2.-) Acyl-CoA thioesterase II
fig|6666666.229911.peg.1390 CDS AEJQ02000025.1 151354 151226 -1 - 129 hypothetical protein - none -
fig|6666666.229911.peg.1391 CDS AEJQ02000025.1 152136 151351 -3 - 786 serine/threonine protein kinase - none -
fig|6666666.229911.peg.1392 CDS AEJQ02000025.1 152717 152157 -2 - 561 unknown - none -
fig|6666666.229911.peg.1393 CDS AEJQ02000025.1 152880 153464 3 + 585 Putative lipoprotein yceB precursor - none -
fig|6666666.229911.peg.1394 CDS AEJQ02000025.1 154435 153521 -1 - 915 ROK family Glucokinase with ambiguous substrate specificity - none -
fig|6666666.229911.peg.1395 CDS AEJQ02000025.1 155154 154486 -3 - 669 Phosphatidylglycerophosphatase B (EC 3.1.3.27) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Osmotic stress cluster
fig|6666666.229911.peg.1396 CDS AEJQ02000025.1 155303 155956 2 + 654 GTP cyclohydrolase II (EC 3.5.4.25) Molybdenum cofactor biosynthesis;
Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster
fig|6666666.229911.peg.1397 CDS AEJQ02000025.1 156235 156975 1 + 741 FIG00698611: hypothetical protein - none -
fig|6666666.229911.peg.1398 CDS AEJQ02000025.1 157538 157137 -2 - 402 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229911.peg.1399 CDS AEJQ02000025.1 158143 157601 -1 - 543 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229911.peg.1400 CDS AEJQ02000025.1 158962 158168 -1 - 795 DNA for glycosyltransferase, lytic transglycosylase, dTDP-4-rhamnose reductase Rhamnose containing glycans
fig|6666666.229911.peg.1401 CDS AEJQ02000025.1 159765 158962 -3 - 804 Exodeoxyribonuclease III (EC 3.1.11.2) DNA repair, bacterial
fig|6666666.229911.peg.1402 CDS AEJQ02000025.1 160034 159909 -2 - 126 hypothetical protein - none -
fig|6666666.229911.peg.1403 CDS AEJQ02000025.1 161724 160306 -3 - 1419 Undecaprenyl-phosphate galactosephosphotransferase (EC 2.7.8.6) - none -
fig|6666666.229911.peg.1404 CDS AEJQ02000025.1 162643 161687 -1 - 957 O antigen biosynthesis rhamnosyltransferase rfbN (EC 2.4.1.-) - none -
fig|6666666.229911.peg.1405 CDS AEJQ02000025.1 163522 162653 -1 - 870 Alpha-L-Rha alpha-1,3-L-rhamnosyltransferase (EC 2.4.1.-) Rhamnose containing glycans
fig|6666666.229911.peg.1406 CDS AEJQ02000025.1 163667 163515 -2 - 153 hypothetical protein - none -
fig|6666666.229911.peg.1407 CDS AEJQ02000025.1 166319 164979 -2 - 1341 membrane protein, related to Actinobacillus protein (1944168) - none -
fig|6666666.229911.peg.1408 CDS AEJQ02000025.1 166998 166306 -3 - 693 NDP-hexose 4-ketoreductase UrdR - none -
fig|6666666.229911.peg.1409 CDS AEJQ02000025.1 168226 166970 -1 - 1257 DNA for glycosyltransferase, lytic transglycosylase, dTDP-4-rhamnose reductase Rhamnose containing glycans
fig|6666666.229911.peg.1410 CDS AEJQ02000025.1 169197 168226 -3 - 972 O antigen biosynthesis rhamnosyltransferase rfbN (EC 2.4.1.-) - none -
fig|6666666.229911.peg.1411 CDS AEJQ02000025.1 169820 169194 -2 - 627 Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40) Rhamnose containing glycans
fig|6666666.229911.peg.1412 CDS AEJQ02000025.1 170725 169934 -1 - 792 O-antigen export system permease protein RfbD - none -
fig|6666666.229911.peg.1413 CDS AEJQ02000025.1 171298 170759 -1 - 540 dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) Capsular heptose biosynthesis;
Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229911.peg.1414 CDS AEJQ02000025.1 172179 171301 -3 - 879 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229911.peg.1415 CDS AEJQ02000025.1 172956 172180 -3 - 777 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229911.peg.1416 CDS AEJQ02000025.1 174197 173130 -2 - 1068 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229911.peg.1417 CDS AEJQ02000025.1 175397 174267 -2 - 1131 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) Murein Hydrolases;
Peptidoglycan Biosynthesis
fig|6666666.229911.peg.1418 CDS AEJQ02000025.1 176208 175399 -3 - 810 Glucosyl-3-phosphoglycerate synthase (EC 2.4.1.266) - none -
fig|6666666.229911.peg.1419 CDS AEJQ02000025.1 177158 176277 -2 - 882 Glycosyltransferase - none -
fig|6666666.229911.peg.1420 CDS AEJQ02000025.1 178351 177158 -1 - 1194 DNA for glycosyltransferase, lytic transglycosylase, dTDP-4-rhamnose reductase Rhamnose containing glycans
fig|6666666.229911.peg.1421 CDS AEJQ02000025.1 179136 178360 -3 - 777 Lipopolysaccharide core biosynthesis glycosyltransferase WadA - none -
fig|6666666.229911.peg.1422 CDS AEJQ02000025.1 179267 180790 2 + 1524 putative flippase - none -
fig|6666666.229911.peg.1423 CDS AEJQ02000025.1 180787 181743 1 + 957 Polysaccharide polymerization protein - none -
fig|6666666.229911.peg.1424 CDS AEJQ02000025.1 181852 182103 1 + 252 YefM protein (antitoxin to YoeB) Toxin-antitoxin replicon stabilization systems
fig|6666666.229911.peg.1425 CDS AEJQ02000025.1 182100 182354 3 + 255 YoeB toxin protein Toxin-antitoxin replicon stabilization systems
fig|6666666.229911.peg.1426 CDS AEJQ02000025.1 182367 183110 3 + 744 Probable transmembrane protein - none -
fig|6666666.229911.peg.1427 CDS AEJQ02000025.1 183083 183244 2 + 162 hypothetical protein - none -
fig|6666666.229911.peg.1428 CDS AEJQ02000025.1 183287 184114 2 + 828 DNA ligase (ATP) (EC 6.5.1.1) DNA ligases
fig|6666666.229911.peg.1429 CDS AEJQ02000025.1 186421 184247 -1 - 2175 ATP-dependent DNA helicase UvrD/PcrA DNA repair, bacterial UvrD and related helicases
fig|6666666.229911.peg.1430 CDS AEJQ02000025.1 187944 186595 -3 - 1350 Low-affinity gluconate/H+ symporter GntU D-gluconate and ketogluconates metabolism
fig|6666666.229911.peg.1431 CDS AEJQ02000025.1 188162 188680 2 + 519 Gluconokinase (EC 2.7.1.12) D-gluconate and ketogluconates metabolism;
Entner-Doudoroff Pathway
fig|6666666.229911.peg.1432 CDS AEJQ02000025.1 188799 188677 -3 - 123 hypothetical protein - none -
fig|6666666.229911.peg.1433 CDS AEJQ02000025.1 189748 188750 -1 - 999 Gluconate utilization system Gnt-I transcriptional repressor D-gluconate and ketogluconates metabolism
fig|6666666.229911.peg.1434 CDS AEJQ02000025.1 190621 189797 -1 - 825 Formate dehydrogenase chain D (EC 1.2.1.2) Formate hydrogenase
fig|6666666.229911.peg.1435 CDS AEJQ02000025.1 190842 193952 3 + 3111 Formate dehydrogenase N alpha subunit (EC 1.2.1.2) @ selenocysteine-containing Formate dehydrogenase;
Formate hydrogenase
fig|6666666.229911.peg.1436 CDS AEJQ02000025.1 194050 194880 1 + 831 Formate dehydrogenase O beta subunit (EC 1.2.1.2) Formate dehydrogenase;
Formate hydrogenase
fig|6666666.229911.peg.1437 CDS AEJQ02000025.1 194873 195586 2 + 714 Formate dehydrogenase -O, gamma subunit (EC 1.2.1.2) Anaerobic respiratory reductases;
Formate hydrogenase
fig|6666666.229911.peg.1438 CDS AEJQ02000025.1 196653 196153 -3 - 501 [NiFe] hydrogenase metallocenter assembly protein HypF G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229911.peg.1439 CDS AEJQ02000025.1 198723 199322 3 + 600 Hydrogenase-4 component A - none -
fig|6666666.229911.peg.1440 CDS AEJQ02000025.1 199355 201376 2 + 2022 Hydrogenase-4 component B (EC 1.-.-.-) / Formate hydrogenlyase subunit 3 Formate hydrogenase;
Formate hydrogenase
fig|6666666.229911.peg.1441 CDS AEJQ02000025.1 201387 202349 3 + 963 Hydrogenase-4 component C - none -
fig|6666666.229911.peg.1442 CDS AEJQ02000025.1 202362 203807 3 + 1446 Hydrogenase-4 component D - none -
fig|6666666.229911.peg.1443 CDS AEJQ02000025.1 203818 204456 1 + 639 Hydrogenase-4 component E (EC 1.-.-.-) Formate hydrogenase
fig|6666666.229911.peg.1444 CDS AEJQ02000025.1 204461 205999 2 + 1539 Hydrogenase-4 component F - none -
fig|6666666.229911.peg.1445 CDS AEJQ02000025.1 206018 207748 2 + 1731 Formate hydrogenlyase subunit 5 Formate hydrogenase
fig|6666666.229911.peg.1446 CDS AEJQ02000025.1 207762 208358 3 + 597 Formate hydrogenlyase complex 3 iron-sulfur protein; Formate hydrogenlyase subunit 6; Ni,Fe-hydrogenase III medium subunit Formate hydrogenase
fig|6666666.229911.peg.1447 CDS AEJQ02000025.1 208406 209182 2 + 777 Formate hydrogenlyase subunit 7 Formate hydrogenase
fig|6666666.229911.peg.1448 CDS AEJQ02000025.1 209328 209732 3 + 405 Formate hydrogenlyase transcriptional activator Formate hydrogenase
fig|6666666.229911.peg.1449 CDS AEJQ02000025.1 209722 210183 1 + 462 Hydrogenase 3 maturation protease (EC 3.4.-.-) - none -
fig|6666666.229911.peg.1450 CDS AEJQ02000025.1 210712 212934 1 + 2223 Formate dehydrogenase H (EC 1.2.1.2) @ selenocysteine-containing Formate dehydrogenase
fig|6666666.229911.peg.1453 CDS AEJQ02000025.1 213977 213105 -2 - 873 Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) Serine-glyoxylate cycle;
TCA Cycle
fig|6666666.229911.peg.1454 CDS AEJQ02000025.1 215157 213988 -3 - 1170 Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) Serine-glyoxylate cycle;
TCA Cycle
fig|6666666.229911.peg.1455 CDS AEJQ02000025.1 216567 215344 -3 - 1224 Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61) Dehydrogenase complexes;
TCA Cycle
fig|6666666.229911.peg.1456 CDS AEJQ02000025.1 219500 216693 -2 - 2808 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) Dehydrogenase complexes;
TCA Cycle
fig|6666666.229911.peg.1457 CDS AEJQ02000025.1 219585 219707 3 + 123 hypothetical protein - none -
fig|6666666.229911.peg.1458 CDS AEJQ02000025.1 220414 219776 -1 - 639 Hypothetical metal-binding enzyme, YcbL homolog CBSS-228400.4.peg.1623
fig|6666666.229911.peg.1459 CDS AEJQ02000025.1 220938 220492 -3 - 447 FIG001587: exported protein CBSS-228400.4.peg.1623
fig|6666666.229911.peg.1460 CDS AEJQ02000025.1 222625 221117 -1 - 1509 L,D-transpeptidase YcbB CBSS-228400.4.peg.1623
fig|6666666.229911.peg.1461 CDS AEJQ02000025.1 224760 222703 -3 - 2058 Tail-specific protease precursor (EC 3.4.21.102) - none -
fig|6666666.229911.peg.1462 CDS AEJQ02000025.1 225442 224834 -1 - 609 ProQ: influences osmotic activation of compatible solute ProP - none -
fig|6666666.229911.peg.1463 CDS AEJQ02000025.1 225660 226943 3 + 1284 Paraquat-inducible protein A Oxidative stress
fig|6666666.229911.peg.1464 CDS AEJQ02000025.1 226906 229563 1 + 2658 Paraquat-inducible protein B Oxidative stress
fig|6666666.229911.peg.1465 CDS AEJQ02000025.1 230883 229639 -3 - 1245 Tripeptide aminopeptidase (EC 3.4.11.4) - none -
fig|6666666.229911.peg.1466 CDS AEJQ02000025.1 231147 232265 3 + 1119 Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) Polyamine Metabolism
fig|6666666.229911.peg.1467 CDS AEJQ02000025.1 232249 233109 1 + 861 Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) Polyamine Metabolism
fig|6666666.229911.peg.1468 CDS AEJQ02000025.1 233109 233882 3 + 774 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) Polyamine Metabolism
fig|6666666.229911.peg.1469 CDS AEJQ02000025.1 234013 235110 1 + 1098 ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1) Polyamine Metabolism
fig|6666666.229911.peg.1470 CDS AEJQ02000025.1 235232 236128 2 + 897 Cytidine deaminase (EC 3.5.4.5) Murein hydrolase regulation and cell death;
pyrimidine conversions;
tRNA modification Bacteria
fig|6666666.229911.peg.1471 CDS AEJQ02000025.1 236226 236113 -3 - 114 hypothetical protein - none -
fig|6666666.229911.peg.1472 CDS AEJQ02000025.1 237523 236207 -1 - 1317 Seryl-tRNA synthetase (EC 6.1.1.11) CBSS-326442.4.peg.1852;
Glycine and Serine Utilization;
tRNA aminoacylation, Ser
fig|6666666.229911.peg.1473 CDS AEJQ02000025.1 237831 239498 3 + 1668 C4-dicarboxylate transporter DcuB - none -
fig|6666666.229911.peg.1474 CDS AEJQ02000025.1 241335 239995 -3 - 1341 FIG065221: Holliday junction DNA helicase CBSS-83333.1.peg.876
fig|6666666.229911.peg.1475 CDS AEJQ02000025.1 241965 241348 -3 - 618 Outer membrane lipoprotein carrier protein LolA CBSS-83333.1.peg.876;
Lipopolysaccharide assembly;
Lipoprotein sorting system
fig|6666666.229911.peg.1476 CDS AEJQ02000025.1 244181 242058 -2 - 2124 Cell division protein FtsK Bacterial Cell Division;
Bacterial Cytoskeleton;
Bacterial RNA-metabolizing Zn-dependent hydrolases;
CBSS-83333.1.peg.876
fig|6666666.229911.peg.1477 CDS AEJQ02000025.1 245178 244699 -3 - 480 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229911.peg.1478 CDS AEJQ02000025.1 247090 245717 -1 - 1374 DNA repair protein RadA DNA repair, bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229911.peg.1479 CDS AEJQ02000025.1 248247 247093 -3 - 1155 Adenylate cyclase (EC 4.6.1.1) cAMP signaling in bacteria
fig|6666666.229911.peg.1480 CDS AEJQ02000025.1 248412 249092 3 + 681 Phosphate transport regulator (distant homolog of PhoU) Phosphate metabolism
fig|6666666.229911.peg.1481 CDS AEJQ02000025.1 249118 250383 1 + 1266 Probable low-affinity inorganic phosphate transporter Phosphate metabolism
fig|6666666.229911.peg.1482 CDS AEJQ02000025.1 250452 251063 3 + 612 SH3 domain protein - none -
fig|6666666.229911.peg.1483 CDS AEJQ02000025.1 251063 252367 2 + 1305 tRNA nucleotidyltransferase (EC 2.7.7.21) (EC 2.7.7.25) Polyadenylation bacterial;
tRNA nucleotidyltransferase
fig|6666666.229911.peg.1484 CDS AEJQ02000025.1 252402 253025 3 + 624 Outer membrane lipoprotein LolB precursor - none -
fig|6666666.229911.peg.1485 CDS AEJQ02000025.1 253964 254914 2 + 951 Ribose-phosphate pyrophosphokinase (EC 2.7.6.1) A Gammaproteobacteria Cluster Relating to Translation;
Pentose phosphate pathway;
Transcription repair cluster
fig|6666666.229911.peg.1486 CDS AEJQ02000025.1 255091 255237 1 + 147 hypothetical protein - none -
fig|6666666.229911.peg.1487 CDS AEJQ02000025.1 255546 256691 3 + 1146 L-lactate dehydrogenase (EC 1.1.2.3) Lactate utilization;
Respiratory dehydrogenases 1
fig|6666666.229911.peg.1488 CDS AEJQ02000025.1 256934 258523 2 + 1590 L-lactate permease Lactate utilization
fig|6666666.229911.peg.1489 CDS AEJQ02000025.1 259010 258678 -2 - 333 UPF0265 protein YeeX Broadly distributed proteins not in subsystems
fig|6666666.229911.peg.1490 CDS AEJQ02000025.1 259035 259151 3 + 117 hypothetical protein - none -
fig|6666666.229911.peg.1491 CDS AEJQ02000025.1 259210 260292 1 + 1083 Phosphoserine aminotransferase (EC 2.6.1.52) Glycine and Serine Utilization;
Pyridoxin (Vitamin B6) Biosynthesis;
Serine Biosynthesis
fig|6666666.229911.peg.1492 CDS AEJQ02000025.1 260319 261464 3 + 1146 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) @ Histidinol-phosphate aminotransferase (EC 2.6.1.9) Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229911.peg.1493 CDS AEJQ02000025.1 262444 262761 1 + 318 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229911.peg.1494 CDS AEJQ02000025.1 263316 262849 -3 - 468 Ribonuclease HI (EC 3.1.26.4) CBSS-228410.1.peg.134;
CBSS-342610.3.peg.1536;
Ribonuclease H
fig|6666666.229911.peg.1495 CDS AEJQ02000025.1 263384 264145 2 + 762 DNA polymerase III epsilon subunit (EC 2.7.7.7) CBSS-228410.1.peg.134;
CBSS-342610.3.peg.1536
fig|6666666.229911.peg.1496 CDS AEJQ02000025.1 264597 264851 3 + 255 RelB/StbD replicon stabilization protein (antitoxin to RelE/StbE) Toxin-antitoxin replicon stabilization systems
fig|6666666.229911.peg.1497 CDS AEJQ02000025.1 264841 265131 1 + 291 RelE/StbE replicon stabilization toxin Toxin-antitoxin replicon stabilization systems
fig|6666666.229911.peg.1498 CDS AEJQ02000025.1 265529 265188 -2 - 342 conserved hypothetical protein - none -
fig|6666666.229911.peg.1499 CDS AEJQ02000025.1 265957 266322 1 + 366 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) Ammonia assimilation;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229911.peg.1500 CDS AEJQ02000025.1 266493 267881 3 + 1389 Putative protease - none -
fig|6666666.229911.peg.1501 CDS AEJQ02000025.1 268509 269231 3 + 723 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) CBSS-211586.1.peg.2832;
Queuosine-Archaeosine Biosynthesis;
Scaffold proteins for [4Fe-4S] cluster assembly (MRP family);
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229911.peg.1502 CDS AEJQ02000025.1 270411 269275 -3 - 1137 Periplasmic aromatic amino acid aminotransferase beta precursor (EC 2.6.1.57) Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229911.peg.1503 CDS AEJQ02000025.1 270884 272035 2 + 1152 tRNA-guanine transglycosylase (EC 2.4.2.29) CBSS-211586.1.peg.2832;
Queuosine-Archaeosine Biosynthesis;
Scaffold proteins for [4Fe-4S] cluster assembly (MRP family);
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229911.peg.1504 CDS AEJQ02000025.1 272170 272310 1 + 141 hypothetical protein - none -
fig|6666666.229911.peg.1505 CDS AEJQ02000025.1 272327 272626 2 + 300 Preprotein translocase subunit YajC (TC 3.A.5.1.1) CBSS-211586.1.peg.2832
fig|6666666.229911.peg.1506 CDS AEJQ02000025.1 272690 274507 2 + 1818 Protein-export membrane protein SecD (TC 3.A.5.1.1) CBSS-211586.1.peg.2832
fig|6666666.229911.peg.1507 CDS AEJQ02000025.1 274524 275489 3 + 966 Protein-export membrane protein SecF (TC 3.A.5.1.1) CBSS-211586.1.peg.2832
fig|6666666.229911.peg.1508 CDS AEJQ02000025.1 275709 278336 3 + 2628 Iron siderophore receptor protein - none -
fig|6666666.229911.peg.1509 CDS AEJQ02000025.1 278523 278407 -3 - 117 hypothetical protein - none -
fig|6666666.229911.peg.1510 CDS AEJQ02000025.1 278686 281307 1 + 2622 Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) 5-FCL-like protein;
Butanol Biosynthesis;
Butanol Biosynthesis;
Fermentations: Lactate;
Fermentations: Mixed acid;
Fermentations: Mixed acid;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229911.peg.1511 CDS AEJQ02000025.1 282343 281390 -1 - 954 Inositol transport system permease protein Inositol catabolism
fig|6666666.229911.peg.1512 CDS AEJQ02000025.1 283899 282394 -3 - 1506 Inositol transport system ATP-binding protein Inositol catabolism
fig|6666666.229911.peg.1513 CDS AEJQ02000025.1 284900 283968 -2 - 933 Inositol transport system sugar-binding protein Inositol catabolism
fig|6666666.229911.peg.1514 CDS AEJQ02000025.1 285922 284984 -1 - 939 Inositol transport system sugar-binding protein Inositol catabolism
fig|6666666.229911.peg.1515 CDS AEJQ02000025.1 287362 286223 -1 - 1140 Myo-inositol 2-dehydrogenase 2 (EC 1.1.1.18) Inositol catabolism
fig|6666666.229911.peg.1516 CDS AEJQ02000025.1 288961 287453 -1 - 1509 Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27) Inositol catabolism
fig|6666666.229911.peg.1517 CDS AEJQ02000025.1 290542 289199 -1 - 1344 putative hexose phosphate transport protein - none -
fig|6666666.229911.peg.1518 CDS AEJQ02000025.1 291363 290560 -3 - 804 Inositol-1-monophosphatase (EC 3.1.3.25) - none -
fig|6666666.229911.peg.1519 CDS AEJQ02000025.1 291627 292457 3 + 831 5-deoxy-glucuronate isomerase (EC 5.3.1.-) Inositol catabolism
fig|6666666.229911.peg.1520 CDS AEJQ02000025.1 292543 292412 -1 - 132 hypothetical protein - none -
fig|6666666.229911.peg.1521 CDS AEJQ02000025.1 292586 293425 2 + 840 Predicted transcriptional regulator of the myo-inositol catabolic operon Inositol catabolism
fig|6666666.229911.peg.1522 CDS AEJQ02000025.1 295372 293465 -1 - 1908 5-keto-2-deoxygluconokinase (EC 2.7.1.92) / uncharacterized domain Inositol catabolism;
Inositol catabolism
fig|6666666.229911.peg.1523 CDS AEJQ02000025.1 295620 295492 -3 - 129 hypothetical protein - none -
fig|6666666.229911.peg.1524 CDS AEJQ02000025.1 295684 297630 1 + 1947 Epi-inositol hydrolase (EC 3.7.1.-) Inositol catabolism
fig|6666666.229911.peg.1525 CDS AEJQ02000025.1 297686 298582 2 + 897 Inosose dehydratase (EC 4.2.1.44) Inositol catabolism
fig|6666666.229911.peg.1526 CDS AEJQ02000025.1 298585 299595 1 + 1011 Myo-inositol 2-dehydrogenase 1 (EC 1.1.1.18) Inositol catabolism
fig|6666666.229911.peg.1527 CDS AEJQ02000025.1 300212 299700 -2 - 513 Mannitol operon repressor Mannitol Utilization
fig|6666666.229911.peg.1528 CDS AEJQ02000025.1 301435 300287 -1 - 1149 Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17) Mannitol Utilization
fig|6666666.229911.peg.1529 CDS AEJQ02000025.1 303393 301513 -3 - 1881 PTS system, mannitol-specific IIC component (EC 2.7.1.69) / PTS system, mannitol-specific IIB component (EC 2.7.1.69) / PTS system, mannitol-specific IIA component (EC 2.7.1.69) Mannitol Utilization;
Mannitol Utilization;
Mannitol Utilization
fig|6666666.229911.peg.1530 CDS AEJQ02000025.1 305236 303803 -1 - 1434 RTX toxin transporter, determinant D # Leukotoxin secretion protein D - none -
fig|6666666.229911.peg.1531 CDS AEJQ02000025.1 307374 305251 -3 - 2124 Methionine ABC transporter ATP-binding protein Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229911.peg.1532 CDS AEJQ02000025.1 310610 307443 -2 - 3168 bifunctional hemolysin-adenylate cyclase precursor cAMP signaling in bacteria
fig|6666666.229911.peg.1533 CDS AEJQ02000025.1 311129 310623 -2 - 507 RTX toxin activating lysine-acyltransferase (EC 2.3.1.-) - none -
fig|6666666.229911.peg.1534 CDS AEJQ02000025.1 313496 312234 -2 - 1263 Serine hydroxymethyltransferase (EC 2.1.2.1) 5-FCL-like protein;
Glycine Biosynthesis;
Glycine and Serine Utilization;
Serine-glyoxylate cycle;
Serine Biosynthesis
fig|6666666.229911.peg.1535 CDS AEJQ02000025.1 314173 313631 -1 - 543 hypothetical protein - none -
fig|6666666.229911.peg.1536 CDS AEJQ02000025.1 314702 314553 -2 - 150 hypothetical protein - none -
fig|6666666.229911.peg.1537 CDS AEJQ02000025.1 315793 314789 -1 - 1005 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) RNA methylation
fig|6666666.229911.peg.1538 CDS AEJQ02000025.1 315849 316298 3 + 450 DNA polymerase III psi subunit (EC 2.7.7.7) - none -
fig|6666666.229911.peg.1539 CDS AEJQ02000025.1 316308 316751 3 + 444 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Ribosome biogenesis bacterial
fig|6666666.229911.peg.1540 CDS AEJQ02000025.1 320169 316753 -3 - 3417 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) DNA repair, bacterial RecBCD pathway
fig|6666666.229911.peg.1541 CDS AEJQ02000025.1 320483 320181 -2 - 303 FIG00696353: hypothetical protein - none -
fig|6666666.229911.peg.1542 CDS AEJQ02000025.1 321060 320458 -3 - 603 FIG00696574: hypothetical protein - none -
fig|6666666.229911.peg.1543 CDS AEJQ02000025.1 321066 321299 3 + 234 hypothetical protein - none -
fig|6666666.229911.peg.1544 CDS AEJQ02000025.1 321534 324083 3 + 2550 ATPase provides energy for both assembly of type IV secretion complex and secretion of T-DNA complex (VirB4) - none -
fig|6666666.229911.peg.1545 CDS AEJQ02000025.1 324094 324825 1 + 732 Minor pilin of type IV secretion complex, VirB5 - none -
fig|6666666.229911.peg.1546 CDS AEJQ02000025.1 324839 325066 2 + 228 hypothetical protein - none -
fig|6666666.229911.peg.1547 CDS AEJQ02000025.1 325076 326077 2 + 1002 Inner membrane protein of type IV secretion of T-DNA complex, VirB6 - none -
fig|6666666.229911.peg.1548 CDS AEJQ02000025.1 326146 326289 1 + 144 hypothetical protein - none -
fig|6666666.229911.peg.1549 CDS AEJQ02000026.1 2265 793 -3 - 1473 Xylulose kinase (EC 2.7.1.17) Xylose utilization
fig|6666666.229911.peg.1550 CDS AEJQ02000026.1 3634 2315 -1 - 1320 Xylose isomerase (EC 5.3.1.5) Xylose utilization
fig|6666666.229911.peg.1551 CDS AEJQ02000026.1 3892 4890 1 + 999 Xylose ABC transporter, periplasmic xylose-binding protein XylF Xylose utilization
fig|6666666.229911.peg.1552 CDS AEJQ02000026.1 4950 5705 3 + 756 D-xylose transport ATP-binding protein XylG Xylose utilization
fig|6666666.229911.peg.1553 CDS AEJQ02000026.1 5801 5682 -2 - 120 hypothetical protein - none -
fig|6666666.229911.peg.1554 CDS AEJQ02000026.1 5853 6461 3 + 609 D-xylose transport ATP-binding protein XylG Xylose utilization
fig|6666666.229911.peg.1555 CDS AEJQ02000026.1 6465 7592 3 + 1128 Xylose ABC transporter, permease protein XylH Xylose utilization
fig|6666666.229911.peg.1556 CDS AEJQ02000026.1 7681 8877 1 + 1197 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229911.peg.1557 CDS AEJQ02000026.1 8930 10276 2 + 1347 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229911.peg.1558 CDS AEJQ02000026.1 10402 10280 -1 - 123 hypothetical protein - none -
fig|6666666.229911.peg.1559 CDS AEJQ02000026.1 10391 11563 2 + 1173 Xylose activator XylR (AraC family) Xylose utilization
fig|6666666.229911.peg.1560 CDS AEJQ02000026.1 13047 11590 -3 - 1458 Permeases of the major facilitator superfamily - none -
fig|6666666.229911.peg.1561 CDS AEJQ02000026.1 13184 13068 -2 - 117 hypothetical protein - none -
fig|6666666.229911.peg.1562 CDS AEJQ02000026.1 13333 14331 1 + 999 PTS system, mannose-specific IIA component (EC 2.7.1.69) / PTS system, mannose-specific IIB component (EC 2.7.1.69) Mannose Metabolism;
Mannose Metabolism;
Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229911.peg.1563 CDS AEJQ02000026.1 14343 15146 3 + 804 PTS system, mannose-specific IIC component - none -
fig|6666666.229911.peg.1564 CDS AEJQ02000026.1 15162 15998 3 + 837 PTS system, mannose-specific IID component - none -
fig|6666666.229911.peg.1565 CDS AEJQ02000026.1 17783 16179 -2 - 1605 Type I restriction-modification system, DNA-methyltransferase subunit M (EC 2.1.1.72) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229911.peg.1566 CDS AEJQ02000026.1 19014 17884 -3 - 1131 Type I restriction-modification system, specificity subunit S (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229911.peg.1567 CDS AEJQ02000026.1 20212 19223 -1 - 990 Putative DNA-binding protein in cluster with Type I restriction-modification system Restriction-Modification System
fig|6666666.229911.peg.1568 CDS AEJQ02000026.1 21043 20261 -1 - 783 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229911.peg.1569 CDS AEJQ02000026.1 23237 21108 -2 - 2130 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229911.peg.1570 CDS AEJQ02000026.1 23538 23386 -3 - 153 hypothetical protein - none -
fig|6666666.229911.peg.1571 CDS AEJQ02000026.1 23543 24589 2 + 1047 ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1) Polyamine Metabolism
fig|6666666.229911.peg.1572 CDS AEJQ02000026.1 25078 24650 -1 - 429 ATP synthase epsilon chain (EC 3.6.3.14) - none -
fig|6666666.229911.peg.1573 CDS AEJQ02000026.1 26493 25120 -3 - 1374 ATP synthase beta chain (EC 3.6.3.14) - none -
fig|6666666.229911.peg.1574 CDS AEJQ02000026.1 27379 26510 -1 - 870 ATP synthase gamma chain (EC 3.6.3.14) - none -
fig|6666666.229911.peg.1575 CDS AEJQ02000026.1 28936 27395 -1 - 1542 ATP synthase alpha chain (EC 3.6.3.14) - none -
fig|6666666.229911.peg.1576 CDS AEJQ02000026.1 29497 28949 -1 - 549 ATP synthase delta chain (EC 3.6.3.14) - none -
fig|6666666.229911.peg.1577 CDS AEJQ02000026.1 29981 29511 -2 - 471 ATP synthase F0 sector subunit b - none -
fig|6666666.229911.peg.1578 CDS AEJQ02000026.1 30285 30031 -3 - 255 ATP synthase F0 sector subunit c (EC 3.6.3.14) - none -
fig|6666666.229911.peg.1579 CDS AEJQ02000026.1 31127 30339 -2 - 789 ATP synthase F0 sector subunit a - none -
fig|6666666.229911.peg.1580 CDS AEJQ02000026.1 31529 31152 -2 - 378 FIG048548: ATP synthase protein I2 - none -
fig|6666666.229911.peg.1581 CDS AEJQ02000026.1 32324 31641 -2 - 684 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB Cell Division Subsystem including YidCD;
RNA methylation;
RNA modification and chromosome partitioning cluster
fig|6666666.229911.peg.1582 CDS AEJQ02000026.1 32679 32317 -3 - 363 Redox-sensing transcriptional regulator QorR NADPH:quinone oxidoreductase 2
fig|6666666.229911.peg.1583 CDS AEJQ02000026.1 32930 33688 2 + 759 NADPH:quinone oxidoreductase 2 NADPH:quinone oxidoreductase 2
fig|6666666.229911.peg.1584 CDS AEJQ02000026.1 35849 33960 -2 - 1890 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA Cell Division Subsystem including YidCD;
RNA modification and chromosome partitioning cluster;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229911.peg.1585 CDS AEJQ02000026.1 36735 36292 -3 - 444 Flavoprotein MioC Flavodoxin
fig|6666666.229911.peg.1586 CDS AEJQ02000026.1 37010 36792 -2 - 219 FIG074102: hypothetical protein - none -
fig|6666666.229911.peg.1587 CDS AEJQ02000026.1 37206 38219 3 + 1014 Fructose-1,6-bisphosphatase, GlpX type (EC 3.1.3.11) Glycolysis and Gluconeogenesis
fig|6666666.229911.peg.1588 CDS AEJQ02000026.1 39657 38860 -3 - 798 Serine acetyltransferase (EC 2.3.1.30) Cysteine Biosynthesis;
Methionine Biosynthesis
fig|6666666.229911.peg.1589 CDS AEJQ02000026.1 40673 39660 -2 - 1014 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) Glutaredoxin 3 containing cluster;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229911.peg.1590 CDS AEJQ02000026.1 41263 40751 -1 - 513 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) Glutaredoxin 3 containing cluster
fig|6666666.229911.peg.1591 CDS AEJQ02000026.1 41701 41279 -1 - 423 FIG136845: Rhodanese-related sulfurtransferase Glutaredoxin 3 containing cluster
fig|6666666.229911.peg.1592 CDS AEJQ02000026.1 42047 43369 2 + 1323 Anaerobic C4-dicarboxylate membrane transporter DcuA - none -
fig|6666666.229911.peg.1593 CDS AEJQ02000026.1 43537 44598 1 + 1062 Transport ATP-binding protein CydD Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229911.peg.1594 CDS AEJQ02000026.1 44634 45284 3 + 651 Transport ATP-binding protein CydD Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229911.peg.1595 CDS AEJQ02000026.1 45301 46188 1 + 888 ABC transporter ATP-binding protein - none -
fig|6666666.229911.peg.1596 CDS AEJQ02000026.1 46223 46936 2 + 714 ABC transporter ATP-binding protein - none -
fig|6666666.229911.peg.1597 CDS AEJQ02000026.1 47668 47048 -1 - 621 Unsaturated fatty acid biosythesis repressor FabR, TetR family - none -
fig|6666666.229911.peg.1598 CDS AEJQ02000026.1 48579 47680 -3 - 900 Hydrogen peroxide-inducible genes activator LysR-family proteins in Escherichia coli;
LysR-family proteins in Salmonella enterica Typhimurium;
Oxidative stress;
Thioredoxin-disulfide reductase
fig|6666666.229911.peg.1599 CDS AEJQ02000026.1 48738 49466 3 + 729 Peroxiredoxin family protein/glutaredoxin - none -
fig|6666666.229911.peg.1600 CDS AEJQ02000026.1 49742 49527 -2 - 216 Protein SlyX - none -
fig|6666666.229911.peg.1601 CDS AEJQ02000026.1 49837 50562 1 + 726 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase;
Potassium homeostasis
fig|6666666.229911.peg.1602 CDS AEJQ02000026.1 50642 51310 2 + 669 YheO-like PAS domain - none -
fig|6666666.229911.peg.1603 CDS AEJQ02000026.1 51314 51691 2 + 378 tRNA 5-methylaminomethyl-2-thiouridine synthase TusD CBSS-326442.4.peg.1852;
Sulfite reduction-associated complex DsrMKJOP and co-clustering genes;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.229911.peg.1604 CDS AEJQ02000026.1 51688 52050 1 + 363 tRNA 5-methylaminomethyl-2-thiouridine synthase TusC CBSS-326442.4.peg.1852;
Sulfite reduction-associated complex DsrMKJOP and co-clustering genes;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.229911.peg.1605 CDS AEJQ02000026.1 52053 52340 3 + 288 tRNA 5-methylaminomethyl-2-thiouridine synthase TusB Sulfite reduction-associated complex DsrMKJOP and co-clustering genes;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.229911.peg.1606 CDS AEJQ02000026.1 53112 52345 -3 - 768 ABC-type polar amino acid transport system, ATPase component CBSS-326442.4.peg.1852
fig|6666666.229911.peg.1607 CDS AEJQ02000026.1 53805 53122 -3 - 684 ABC-type amino acid transport system, permease component - none -
fig|6666666.229911.peg.1608 CDS AEJQ02000026.1 54607 53828 -1 - 780 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain - none -
fig|6666666.229911.peg.1609 CDS AEJQ02000026.1 56028 54733 -3 - 1296 Glycine/D-amino acid oxidases (deaminating) - none -
fig|6666666.229911.peg.1610 CDS AEJQ02000026.1 57517 56153 -1 - 1365 lipoprotein, putative - none -
fig|6666666.229911.peg.1611 CDS AEJQ02000026.1 60376 59462 -1 - 915 N-acetylmuramic acid 6-phosphate etherase - none -
fig|6666666.229911.peg.1612 CDS AEJQ02000026.1 61503 60373 -3 - 1131 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) Recycling of Peptidoglycan Amino Sugars
fig|6666666.229911.peg.1613 CDS AEJQ02000026.1 61589 62959 2 + 1371 N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23) / Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157) Peptidoglycan Biosynthesis;
Peptidoglycan Biosynthesis;
Sialic Acid Metabolism;
Sialic Acid Metabolism;
Transcription repair cluster;
Transcription repair cluster;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229911.peg.1614 CDS AEJQ02000026.1 62993 63124 2 + 132 hypothetical protein - none -
fig|6666666.229911.peg.1615 CDS AEJQ02000026.1 64204 63113 -1 - 1092 Putative exported protein precursor - none -
fig|6666666.229911.peg.1616 CDS AEJQ02000026.1 65091 64342 -3 - 750 Deoxyribose operon repressor, DeoR family Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.229911.peg.1617 CDS AEJQ02000026.1 65790 65119 -3 - 672 Deoxyribose-phosphate aldolase (EC 4.1.2.4) Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.229911.peg.1618 CDS AEJQ02000026.1 66636 66277 -3 - 360 Mobile element protein - none -
fig|6666666.229911.peg.1619 CDS AEJQ02000026.1 67336 66779 -1 - 558 Integrase - none -
fig|6666666.229911.peg.1620 CDS AEJQ02000026.1 68366 68136 -2 - 231 hypothetical protein - none -
fig|6666666.229911.peg.1621 CDS AEJQ02000026.1 71098 68363 -1 - 2736 Putative uncharacterized protein ydbH - none -
fig|6666666.229911.peg.1622 CDS AEJQ02000026.1 71821 71204 -1 - 618 Multiple antibiotic resistance protein marC - none -
fig|6666666.229911.peg.1623 CDS AEJQ02000026.1 73219 73737 1 + 519 Glutathione-regulated potassium-efflux system ATP-binding protein Potassium homeostasis
fig|6666666.229911.peg.1624 CDS AEJQ02000026.1 73885 74943 1 + 1059 RecA protein DNA repair, bacterial;
DNA repair, bacterial RecFOR pathway;
DNA repair system including RecA, MutS and a hypothetical protein;
RecA and RecX
fig|6666666.229911.peg.1625 CDS AEJQ02000026.1 75025 75483 1 + 459 Regulatory protein RecX DNA repair system including RecA, MutS and a hypothetical protein;
RecA and RecX
fig|6666666.229911.peg.1626 CDS AEJQ02000026.1 75560 75949 2 + 390 Endoribonuclease L-PSP - none -
fig|6666666.229911.peg.1627 CDS AEJQ02000026.1 78018 76021 -3 - 1998 Transketolase (EC 2.2.1.1) Pentose phosphate pathway
fig|6666666.229911.peg.1628 CDS AEJQ02000026.1 79104 78151 -3 - 954 Transaldolase (EC 2.2.1.2) Fructose utilization;
Pentose phosphate pathway
fig|6666666.229911.peg.1629 CDS AEJQ02000028.1 1532 123 -2 - 1410 Glutamine synthetase type I (EC 6.3.1.2) Ammonia assimilation;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Glutamine synthetases;
Peptidoglycan Biosynthesis
fig|6666666.229911.peg.1630 CDS AEJQ02000028.1 1920 3773 3 + 1854 GTP-binding protein TypA/BipA - none -
fig|6666666.229911.peg.1631 CDS AEJQ02000028.1 3883 3770 -1 - 114 hypothetical protein - none -
fig|6666666.229911.peg.1632 CDS AEJQ02000028.1 3999 5138 3 + 1140 TolA protein Ton and Tol transport systems
fig|6666666.229911.peg.1633 CDS AEJQ02000028.1 5089 6675 1 + 1587 Immunoglobulin A1 protease / autotransporter domain, T5aSS type secretion Autotransporter proteins;
Autotransporter proteins
fig|6666666.229911.peg.1634 CDS AEJQ02000028.1 7203 6739 -3 - 465 Thiol peroxidase, Bcp-type (EC 1.11.1.15) CBSS-316057.3.peg.3521;
Thioredoxin-disulfide reductase
fig|6666666.229911.peg.1635 CDS AEJQ02000028.1 7361 8254 2 + 894 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229911.peg.1636 CDS AEJQ02000028.1 8368 9072 1 + 705 Outer membrane protein NlpB, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and YfgL); Lipoprotein-34 precursor Lipopolysaccharide assembly
fig|6666666.229911.peg.1637 CDS AEJQ02000028.1 9203 9361 2 + 159 Outer membrane protein NlpB, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and YfgL); Lipoprotein-34 precursor Lipopolysaccharide assembly
fig|6666666.229911.peg.1638 CDS AEJQ02000028.1 9496 11007 1 + 1512 L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1) / Osmotic adaptation Choline and Betaine Uptake and Betaine Biosynthesis
fig|6666666.229911.peg.1639 CDS AEJQ02000028.1 11322 12158 3 + 837 L-proline glycine betaine ABC transport system permease protein ProV (TC 3.A.1.12.1) Choline and Betaine Uptake and Betaine Biosynthesis
fig|6666666.229911.peg.1640 CDS AEJQ02000028.1 12906 12211 -3 - 696 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC A Hypothetical Protein Related to Proline Metabolism;
CBSS-630.2.peg.3360
fig|6666666.229911.peg.1641 CDS AEJQ02000028.1 14287 12899 -1 - 1389 Nicotinamide phosphoribosyltransferase (EC 2.4.2.12) NAD and NADP cofactor biosynthesis global
fig|6666666.229911.peg.1642 CDS AEJQ02000028.1 14426 14557 2 + 132 hypothetical protein - none -
fig|6666666.229911.peg.1643 CDS AEJQ02000028.1 14646 17093 3 + 2448 Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) CBSS-216591.1.peg.168;
Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch;
Methionine Biosynthesis;
Threonine and Homoserine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229911.peg.1644 CDS AEJQ02000028.1 17106 18050 3 + 945 Homoserine kinase (EC 2.7.1.39) CBSS-269482.1.peg.1294;
Methionine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229911.peg.1645 CDS AEJQ02000028.1 18078 18518 3 + 441 hypothetical protein - none -
fig|6666666.229911.peg.1646 CDS AEJQ02000028.1 18574 19848 1 + 1275 Threonine synthase (EC 4.2.3.1) Threonine and Homoserine Biosynthesis
fig|6666666.229911.peg.1647 CDS AEJQ02000028.1 19883 20626 2 + 744 4@1-phosphopantetheinyl transferase (EC 2.7.8.-) Fatty Acid Biosynthesis FASII
fig|6666666.229911.peg.1648 CDS AEJQ02000028.1 20722 21975 1 + 1254 HflK protein Hfl operon;
Scaffold proteins for [4Fe-4S] cluster assembly (MRP family)
fig|6666666.229911.peg.1649 CDS AEJQ02000028.1 21975 22862 3 + 888 HflC protein Hfl operon;
Scaffold proteins for [4Fe-4S] cluster assembly (MRP family)
fig|6666666.229911.peg.1650 CDS AEJQ02000028.1 23150 22995 -2 - 156 hypothetical protein - none -
fig|6666666.229911.peg.1651 CDS AEJQ02000028.1 23152 23481 1 + 330 DNA uptake protein and related DNA-binding proteins - none -
fig|6666666.229911.peg.1652 CDS AEJQ02000028.1 23507 24187 2 + 681 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) Heat shock dnaK gene cluster extended;
Housecleaning nucleoside triphosphate pyrophosphatases
fig|6666666.229911.peg.1653 CDS AEJQ02000028.1 24226 24549 1 + 324 PlcB, ORFX, ORFP, ORFB, ORFA, ldh gene - none -
fig|6666666.229911.peg.1654 CDS AEJQ02000028.1 24549 25718 3 + 1170 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB CBSS-630.2.peg.3360;
Heat shock dnaK gene cluster extended;
Heme and Siroheme Biosynthesis;
Queuosine-Archaeosine Biosynthesis
fig|6666666.229911.peg.1655 CDS AEJQ02000028.1 25817 26473 2 + 657 Ribose 5-phosphate isomerase A (EC 5.3.1.6) D-ribose utilization;
Pentose phosphate pathway
fig|6666666.229911.peg.1656 CDS AEJQ02000028.1 26492 27724 2 + 1233 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) Glycine and Serine Utilization;
Pyridoxin (Vitamin B6) Biosynthesis;
Serine Biosynthesis
fig|6666666.229911.peg.1657 CDS AEJQ02000028.1 27733 27852 1 + 120 hypothetical protein - none -
fig|6666666.229911.peg.1658 CDS AEJQ02000028.1 28034 29080 2 + 1047 iron chelatin ABC transporter periplasmic-binding protein - none -
fig|6666666.229911.peg.1659 CDS AEJQ02000028.1 29807 29166 -2 - 642 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) D-Galacturonate and D-Glucuronate Utilization;
Entner-Doudoroff Pathway
fig|6666666.229911.peg.1660 CDS AEJQ02000028.1 31219 29816 -1 - 1404 Uronate isomerase (EC 5.3.1.12) D-Galacturonate and D-Glucuronate Utilization
fig|6666666.229911.peg.1661 CDS AEJQ02000028.1 32074 31229 -1 - 846 D-mannonate oxidoreductase (EC 1.1.1.57) D-Galacturonate and D-Glucuronate Utilization
fig|6666666.229911.peg.1662 CDS AEJQ02000028.1 33030 32086 -3 - 945 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) D-Galacturonate and D-Glucuronate Utilization;
D-gluconate and ketogluconates metabolism;
Entner-Doudoroff Pathway
fig|6666666.229911.peg.1663 CDS AEJQ02000028.1 34077 33085 -3 - 993 TRAP-type C4-dicarboxylate transport system, periplasmic component TRAP Transporter collection
fig|6666666.229911.peg.1664 CDS AEJQ02000028.1 34790 36091 2 + 1302 TRAP-type C4-dicarboxylate transport system, large permease component TRAP Transporter collection
fig|6666666.229911.peg.1665 CDS AEJQ02000028.1 36115 38490 1 + 2376 Alpha-glucosidase (EC 3.2.1.20) D-Galacturonate and D-Glucuronate Utilization;
Maltose and Maltodextrin Utilization
fig|6666666.229911.peg.1666 CDS AEJQ02000028.1 38505 39260 3 + 756 Hexuronate utilization operon transcriptional repressor ExuR D-Galacturonate and D-Glucuronate Utilization
fig|6666666.229911.peg.1667 CDS AEJQ02000028.1 39280 40464 1 + 1185 Mannonate dehydratase (EC 4.2.1.8) D-Galacturonate and D-Glucuronate Utilization
fig|6666666.229911.peg.1668 CDS AEJQ02000028.1 40502 41059 2 + 558 hypothetical protein - none -
fig|6666666.229911.peg.1669 CDS AEJQ02000028.1 41477 42379 2 + 903 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229911.peg.1670 CDS AEJQ02000028.1 44159 42405 -2 - 1755 Putative sulfate permease - none -
fig|6666666.229911.peg.1671 CDS AEJQ02000028.1 44590 47007 1 + 2418 ATP-dependent protease La (EC 3.4.21.53) Type I Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229911.peg.1672 CDS AEJQ02000028.1 48919 47069 -1 - 1851 RNA polymerase sigma factor RpoD CBSS-349161.4.peg.2417;
Macromolecular synthesis operon;
Transcription initiation, bacterial sigma factors
fig|6666666.229911.peg.1673 CDS AEJQ02000028.1 50752 48995 -1 - 1758 DNA primase (EC 2.7.7.-) CBSS-349161.4.peg.2417;
Macromolecular synthesis operon
fig|6666666.229911.peg.1674 CDS AEJQ02000028.1 51089 50874 -2 - 216 SSU ribosomal protein S21p Macromolecular synthesis operon;
Ribosome SSU bacterial
fig|6666666.229911.peg.1675 CDS AEJQ02000028.1 51124 51291 1 + 168 hypothetical protein - none -
fig|6666666.229911.peg.1676 CDS AEJQ02000028.1 51314 52342 2 + 1029 TsaD/Kae1/Qri7 protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Macromolecular synthesis operon;
YgjD and YeaZ
fig|6666666.229911.peg.1677 CDS AEJQ02000028.1 52407 52640 3 + 234 unknown - none -
fig|6666666.229911.peg.1678 CDS AEJQ02000028.1 52643 53221 2 + 579 Thymidine kinase (EC 2.7.1.21) pyrimidine conversions
fig|6666666.229911.peg.1679 CDS AEJQ02000028.1 55301 53289 -2 - 2013 DNA ligase (EC 6.5.1.2) DNA Repair Base Excision
fig|6666666.229911.peg.1680 CDS AEJQ02000028.1 56440 55403 -1 - 1038 Cell division protein ZipA Bacterial Cytoskeleton
fig|6666666.229911.peg.1681 CDS AEJQ02000028.1 56580 57404 3 + 825 Sulfate transporter, CysZ-type Cysteine Biosynthesis
fig|6666666.229911.peg.1682 CDS AEJQ02000028.1 57505 58452 1 + 948 Cysteine synthase (EC 2.5.1.47) Cysteine Biosynthesis;
Methionine Biosynthesis
fig|6666666.229911.peg.1683 CDS AEJQ02000028.1 58530 58417 -3 - 114 hypothetical protein - none -
fig|6666666.229911.peg.1684 CDS AEJQ02000028.1 58818 58672 -3 - 147 hypothetical protein - none -
fig|6666666.229911.peg.1685 CDS AEJQ02000028.1 59475 58894 -3 - 582 Hypothetical protein VC0266 (sugar utilization related?) VC0266
fig|6666666.229911.peg.1686 CDS AEJQ02000028.1 60875 59784 -2 - 1092 GTP-binding and nucleic acid-binding protein YchF - none -
fig|6666666.229911.peg.1687 CDS AEJQ02000028.1 61747 61064 -1 - 684 Peptidyl-tRNA hydrolase (EC 3.1.1.29) Cell division-ribosomal stress proteins cluster;
Sporulation-associated proteins with broader functions;
Transcription repair cluster;
Translation termination factors bacterial
fig|6666666.229911.peg.1688 CDS AEJQ02000028.1 62113 62655 1 + 543 Mobile element protein - none -
fig|6666666.229911.peg.1689 CDS AEJQ02000029.1 478 227 -1 - 252 Transcriptional regulator, XRE family - none -
fig|6666666.229911.peg.1690 CDS AEJQ02000029.1 1534 605 -1 - 930 hypothetical protein - none -
fig|6666666.229911.peg.1691 CDS AEJQ02000029.1 1605 2243 3 + 639 NAD-dependent malic enzyme (EC 1.1.1.38) Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229911.peg.1692 CDS AEJQ02000029.1 3662 2463 -2 - 1200 NAD(FAD)-utilizing dehydrogenases - none -
fig|6666666.229911.peg.1693 CDS AEJQ02000029.1 4708 3659 -1 - 1050 Cytochrome c-type heme lyase subunit nrfF, nitrite reductase complex assembly - none -
fig|6666666.229911.peg.1694 CDS AEJQ02000029.1 5235 4705 -3 - 531 Putative thiol:disulfide oxidoreductase, nitrite reductase complex assembly - none -
fig|6666666.229911.peg.1695 CDS AEJQ02000029.1 7138 5228 -1 - 1911 Cytochrome c-type heme lyase subunit nrfE, nitrite reductase complex assembly - none -
fig|6666666.229911.peg.1696 CDS AEJQ02000029.1 7160 7528 2 + 369 hypothetical protein - none -
fig|6666666.229911.peg.1697 CDS AEJQ02000029.1 8690 7725 -2 - 966 NrfD protein - none -
fig|6666666.229911.peg.1698 CDS AEJQ02000029.1 9364 8687 -1 - 678 NrfC protein - none -
fig|6666666.229911.peg.1699 CDS AEJQ02000029.1 10026 9361 -3 - 666 Cytochrome c-type protein NrfB precursor - none -
fig|6666666.229911.peg.1700 CDS AEJQ02000029.1 11623 10100 -1 - 1524 Cytochrome c552 precursor (EC 1.7.2.2) Soluble cytochromes and functionally related electron carriers
fig|6666666.229911.peg.1701 CDS AEJQ02000029.1 12490 12200 -1 - 291 hypothetical protein - none -
fig|6666666.229911.peg.1702 CDS AEJQ02000029.1 12981 12508 -3 - 474 Parvulin-like peptidyl-prolyl isomerase - none -
fig|6666666.229911.peg.1703 CDS AEJQ02000029.1 13131 13009 -3 - 123 hypothetical protein - none -
fig|6666666.229911.peg.1704 CDS AEJQ02000029.1 14189 13266 -2 - 924 Cytochrome c heme lyase subunit CcmH Biogenesis of c-type cytochromes;
Copper homeostasis
fig|6666666.229911.peg.1705 CDS AEJQ02000029.1 14641 14189 -1 - 453 Cytochrome c heme lyase subunit CcmL Biogenesis of c-type cytochromes
fig|6666666.229911.peg.1706 CDS AEJQ02000029.1 15285 14740 -3 - 546 Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase Biogenesis of c-type cytochromes;
Periplasmic disulfide interchange
fig|6666666.229911.peg.1707 CDS AEJQ02000029.1 17272 15314 -1 - 1959 Cytochrome c heme lyase subunit CcmF Biogenesis of c-type cytochromes;
Copper homeostasis
fig|6666666.229911.peg.1708 CDS AEJQ02000029.1 17790 17272 -3 - 519 Cytochrome c-type biogenesis protein CcmE, heme chaperone Biogenesis of c-type cytochromes
fig|6666666.229911.peg.1709 CDS AEJQ02000029.1 17993 17787 -2 - 207 Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE Biogenesis of c-type cytochromes
fig|6666666.229911.peg.1710 CDS AEJQ02000029.1 18748 18011 -1 - 738 Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE Biogenesis of c-type cytochromes
fig|6666666.229911.peg.1711 CDS AEJQ02000029.1 19424 18759 -2 - 666 ABC transporter involved in cytochrome c biogenesis, CcmB subunit Biogenesis of c-type cytochromes
fig|6666666.229911.peg.1712 CDS AEJQ02000029.1 20064 19429 -3 - 636 ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA Biogenesis of c-type cytochromes
fig|6666666.229911.peg.1713 CDS AEJQ02000029.1 20380 20213 -1 - 168 hypothetical protein - none -
fig|6666666.229911.peg.1714 CDS AEJQ02000029.1 21428 20331 -2 - 1098 Bicyclomycin resistance protein - none -
fig|6666666.229911.peg.1715 CDS AEJQ02000029.1 22134 21433 -3 - 702 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses
fig|6666666.229911.peg.1716 CDS AEJQ02000029.1 22176 22358 3 + 183 hypothetical protein - none -
fig|6666666.229911.peg.1717 CDS AEJQ02000029.1 22351 24615 1 + 2265 NADP-dependent malic enzyme (EC 1.1.1.40) Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229911.peg.1718 CDS AEJQ02000029.1 24759 25403 3 + 645 Manganese superoxide dismutase (EC 1.15.1.1) Oxidative stress;
Protection from Reactive Oxygen Species
fig|6666666.229911.peg.1719 CDS AEJQ02000029.1 25814 26605 2 + 792 putative lipoprotein - none -
fig|6666666.229911.peg.1720 CDS AEJQ02000029.1 27636 26809 -3 - 828 YpfJ protein, zinc metalloprotease superfamily Broadly distributed proteins not in subsystems
fig|6666666.229911.peg.1721 CDS AEJQ02000029.1 27776 28219 2 + 444 FIG00904084: hypothetical protein - none -
fig|6666666.229911.peg.1722 CDS AEJQ02000029.1 28905 28309 -3 - 597 Acyl-phosphate:glycerol-3-phosphate O-acyltransferase PlsY Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229911.peg.1723 CDS AEJQ02000029.1 29002 29355 1 + 354 Dihydroneopterin aldolase (EC 4.1.2.25) Folate Biosynthesis;
Folate biosynthesis cluster
fig|6666666.229911.peg.1724 CDS AEJQ02000029.1 29376 30806 3 + 1431 Transglycosylase, Slt family - none -
fig|6666666.229911.peg.1725 CDS AEJQ02000029.1 30817 30963 1 + 147 hypothetical protein - none -
fig|6666666.229911.peg.1726 CDS AEJQ02000029.1 31545 31006 -3 - 540 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation Biogenesis of c-type cytochromes;
Periplasmic disulfide interchange
fig|6666666.229911.peg.1727 CDS AEJQ02000029.1 33113 31569 -2 - 1545 Na+/H+ antiporter NhaB - none -
fig|6666666.229911.peg.1728 CDS AEJQ02000029.1 33308 34039 2 + 732 Transcriptional regulator for fatty acid degradation FadR, GntR family - none -
fig|6666666.229911.peg.1729 CDS AEJQ02000029.1 35374 34160 -1 - 1215 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229911.peg.1730 CDS AEJQ02000029.1 35491 36795 1 + 1305 Menaquinone-specific isochorismate synthase (EC 5.4.4.2) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229911.peg.1731 CDS AEJQ02000029.1 36786 38492 3 + 1707 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase (EC 2.2.1.9) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229911.peg.1732 CDS AEJQ02000029.1 38545 39294 1 + 750 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase (EC 4.2.99.20) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229911.peg.1733 CDS AEJQ02000029.1 39390 39659 3 + 270 SSU ribosomal protein S15p (S13e) Ribosome SSU bacterial
fig|6666666.229911.peg.1734 CDS AEJQ02000029.1 39867 41021 3 + 1155 S-adenosylmethionine synthetase (EC 2.5.1.6) Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229911.peg.1735 CDS AEJQ02000029.1 41090 41590 2 + 501 Protein sprT - none -
fig|6666666.229911.peg.1736 CDS AEJQ02000029.1 41747 42988 2 + 1242 Serine transporter Glycine and Serine Utilization;
Pyruvate Alanine Serine Interconversions
fig|6666666.229911.peg.1737 CDS AEJQ02000029.1 43081 44445 1 + 1365 L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17) Glycine and Serine Utilization;
Glycine and Serine Utilization;
Pyruvate Alanine Serine Interconversions;
Pyruvate Alanine Serine Interconversions
fig|6666666.229911.peg.1738 CDS AEJQ02000029.1 45675 44626 -3 - 1050 L-asparaginase (EC 3.5.1.1) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229911.peg.1739 CDS AEJQ02000029.1 45970 47109 1 + 1140 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) CBSS-498211.3.peg.1415;
Conserved gene cluster associated with Met-tRNA formyltransferase;
RNA methylation
fig|6666666.229911.peg.1740 CDS AEJQ02000029.1 47131 47682 1 + 552 Type IV pilus biogenesis protein PilF CBSS-498211.3.peg.1415
fig|6666666.229911.peg.1741 CDS AEJQ02000029.1 47826 48881 3 + 1056 FIG021952: putative membrane protein CBSS-498211.3.peg.1415
fig|6666666.229911.peg.1742 CDS AEJQ02000029.1 48893 49996 2 + 1104 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (EC 1.17.7.1) CBSS-498211.3.peg.1415;
CBSS-83331.1.peg.3039;
Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.229911.peg.1743 CDS AEJQ02000029.1 50018 51295 2 + 1278 Histidyl-tRNA synthetase (EC 6.1.1.21) CBSS-498211.3.peg.1415;
tRNA aminoacylation, His
fig|6666666.229911.peg.1744 CDS AEJQ02000029.1 51306 51920 3 + 615 Mlr7403 protein CBSS-290633.1.peg.1906;
CBSS-498211.3.peg.1415
fig|6666666.229911.peg.1745 CDS AEJQ02000029.1 51973 52425 1 + 453 Putative protein-S-isoprenylcysteine methyltransferase - none -
fig|6666666.229911.peg.1746 CDS AEJQ02000029.1 53135 52431 -2 - 705 Chromosomal replication initiator protein DnaA Cell Division Subsystem including YidCD;
DNA replication cluster 1
fig|6666666.229911.peg.1747 CDS AEJQ02000029.1 53121 53258 3 + 138 hypothetical protein - none -
fig|6666666.229911.peg.1748 CDS AEJQ02000029.1 54508 53255 -1 - 1254 Uracil permease De Novo Pyrimidine Synthesis
fig|6666666.229911.peg.1749 CDS AEJQ02000029.1 55258 54632 -1 - 627 Uracil phosphoribosyltransferase (EC 2.4.2.9) De Novo Pyrimidine Synthesis;
pyrimidine conversions
fig|6666666.229911.peg.1750 CDS AEJQ02000029.1 57240 55393 -3 - 1848 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase
fig|6666666.229911.peg.1751 CDS AEJQ02000029.1 59646 57373 -3 - 2274 Glutathione biosynthesis bifunctional protein gshF (EC 6.3.2.2)(EC 6.3.2.3) Glutathione: Biosynthesis and gamma-glutamyl cycle
fig|6666666.229911.peg.1752 CDS AEJQ02000029.1 59878 61479 1 + 1602 Dca - none -
fig|6666666.229911.peg.1753 CDS AEJQ02000029.1 61736 62302 2 + 567 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent;
cAMP signaling in bacteria
fig|6666666.229911.peg.1754 CDS AEJQ02000029.1 62312 63553 2 + 1242 ATP-dependent Clp protease ATP-binding subunit ClpX Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229911.peg.1755 CDS AEJQ02000029.1 63939 63616 -3 - 324 FIG074102: hypothetical protein - none -
fig|6666666.229911.peg.1756 CDS AEJQ02000029.1 64096 63932 -1 - 165 Phage-related protein - none -
fig|6666666.229911.peg.1757 CDS AEJQ02000029.1 65244 64399 -3 - 846 membrane protein, putative - none -
fig|6666666.229911.peg.1758 CDS AEJQ02000029.1 67476 65317 -3 - 2160 Copper-translocating P-type ATPase (EC 3.6.3.4) Copper Transport System;
Copper homeostasis
fig|6666666.229911.peg.1759 CDS AEJQ02000029.1 67775 67563 -2 - 213 Copper chaperone Copper homeostasis
fig|6666666.229911.peg.1760 CDS AEJQ02000029.1 67870 68256 1 + 387 Cu(I)-responsive transcriptional regulator Copper homeostasis
fig|6666666.229911.peg.1761 CDS AEJQ02000029.1 68534 69757 2 + 1224 Type I restriction-modification system, DNA-methyltransferase subunit M (EC 2.1.1.72) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229911.peg.1762 CDS AEJQ02000029.1 69905 70873 2 + 969 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229911.peg.1763 CDS AEJQ02000029.1 70899 71723 3 + 825 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229911.peg.1764 CDS AEJQ02000029.1 71725 72681 1 + 957 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229911.peg.1765 CDS AEJQ02000029.1 73845 73009 -3 - 837 COG1720: Uncharacterized conserved protein tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229911.peg.1766 CDS AEJQ02000029.1 73973 74878 2 + 906 1,4-dihydroxy-2-naphthoate polyprenyltransferase (EC 2.5.1.74) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229911.peg.1767 CDS AEJQ02000029.1 74929 75429 1 + 501 Ribonuclease E inhibitor RraA RNA processing and degradation, bacterial
fig|6666666.229911.peg.1768 CDS AEJQ02000029.1 75618 77000 3 + 1383 Arsenic efflux pump protein Arsenic resistance
fig|6666666.229911.peg.1769 CDS AEJQ02000029.1 77603 77070 -2 - 534 FIG138315: Putative alpha helix protein Putative TldE-TldD proteolytic complex
fig|6666666.229911.peg.1770 CDS AEJQ02000029.1 77724 79085 3 + 1362 TldE protein, part of TldE/TldD proteolytic complex Putative TldE-TldD proteolytic complex
fig|6666666.229911.peg.1771 CDS AEJQ02000029.1 79324 79863 1 + 540 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) Cell division-ribosomal stress proteins cluster;
Folate biosynthesis cluster;
Purine conversions
fig|6666666.229911.peg.1772 CDS AEJQ02000029.1 81072 79933 -3 - 1140 Glycerate kinase (EC 2.7.1.31) D-galactarate, D-glucarate and D-glycerate catabolism;
D-galactarate, D-glucarate and D-glycerate catabolism - gjo;
Glycerate metabolism;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Glycine and Serine Utilization;
Serine-glyoxylate cycle
fig|6666666.229911.peg.1773 CDS AEJQ02000029.1 82343 81069 -2 - 1275 D-glycerate transporter (predicted) D-galactarate, D-glucarate and D-glycerate catabolism;
D-galactarate, D-glucarate and D-glycerate catabolism - gjo;
Glycerate metabolism
fig|6666666.229911.peg.1774 CDS AEJQ02000029.1 83578 82475 -1 - 1104 Sugar diacid utilization regulator SdaR D-galactarate, D-glucarate and D-glycerate catabolism;
D-galactarate, D-glucarate and D-glycerate catabolism - gjo
fig|6666666.229911.peg.1775 CDS AEJQ02000029.1 83883 84494 3 + 612 UDP-glucose dehydrogenase (EC 1.1.1.22) - none -
fig|6666666.229911.peg.1776 CDS AEJQ02000029.1 86365 84578 -1 - 1788 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) - none -
fig|6666666.229911.peg.1777 CDS AEJQ02000029.1 87394 86492 -1 - 903 Lipoprotein nlpI precursor - none -
fig|6666666.229911.peg.1778 CDS AEJQ02000029.1 89710 87479 -1 - 2232 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) Bacterial RNA-metabolizing Zn-dependent hydrolases;
Polyadenylation bacterial
fig|6666666.229911.peg.1779 CDS AEJQ02000029.1 89902 90372 1 + 471 Putative sugar isomerase involved in processing of exogenous sialic acid Sialic Acid Metabolism
fig|6666666.229911.peg.1780 CDS AEJQ02000029.1 90486 90361 -3 - 126 hypothetical protein - none -
fig|6666666.229911.peg.1781 CDS AEJQ02000029.1 91499 90846 -2 - 654 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD Recycling of Peptidoglycan Amino Acids
fig|6666666.229911.peg.1782 CDS AEJQ02000029.1 91522 91974 1 + 453 Type IV pilin PilA Type IV pilus
fig|6666666.229911.peg.1783 CDS AEJQ02000029.1 92001 92225 3 + 225 Type IV fimbrial assembly, ATPase PilB Type IV pilus
fig|6666666.229911.peg.1784 CDS AEJQ02000029.1 92191 92559 1 + 369 Type IV fimbrial assembly, ATPase PilB Type IV pilus
fig|6666666.229911.peg.1785 CDS AEJQ02000029.1 92540 93406 2 + 867 Type IV fimbrial assembly, ATPase PilB Type IV pilus
fig|6666666.229911.peg.1786 CDS AEJQ02000029.1 93399 94622 3 + 1224 Type II secretory pathway, component PulF / Type IV fimbrial assembly protein PilC Type IV pilus
fig|6666666.229911.peg.1787 CDS AEJQ02000029.1 94622 95308 2 + 687 Leader peptidase (Prepilin peptidase) (EC 3.4.23.43) / N-methyltransferase (EC 2.1.1.-) Type IV pilus;
Type IV pilus
fig|6666666.229911.peg.1788 CDS AEJQ02000029.1 95358 95981 3 + 624 Dephospho-CoA kinase (EC 2.7.1.24) Coenzyme A Biosynthesis
fig|6666666.229911.peg.1789 CDS AEJQ02000029.1 95971 96183 1 + 213 FIG003276: zinc-binding protein - none -
fig|6666666.229911.peg.1790 CDS AEJQ02000029.1 96183 96455 3 + 273 FIG00904058: hypothetical protein - none -
fig|6666666.229911.peg.1791 CDS AEJQ02000029.1 96852 98225 3 + 1374 Sodium/glycine symporter GlyP - none -
fig|6666666.229911.peg.1792 CDS AEJQ02000029.1 98453 98776 2 + 324 Ribosome hibernation protein YfiA Ribosome activity modulation
fig|6666666.229911.peg.1793 CDS AEJQ02000029.1 99231 99479 3 + 249 unknown - none -
fig|6666666.229911.peg.1794 CDS AEJQ02000029.1 100394 100095 -2 - 300 DNA-binding protein Fis DNA structural proteins, bacterial
fig|6666666.229911.peg.1795 CDS AEJQ02000029.1 101437 100388 -1 - 1050 tRNA dihydrouridine synthase B (EC 1.-.-.-) tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229911.peg.1796 CDS AEJQ02000029.1 102566 101682 -2 - 885 Ribosomal protein L11 methyltransferase (EC 2.1.1.-) Heat shock dnaK gene cluster extended;
Ribosome biogenesis bacterial
fig|6666666.229911.peg.1797 CDS AEJQ02000029.1 103121 102579 -2 - 543 Protein involved in cell division - none -
fig|6666666.229911.peg.1798 CDS AEJQ02000029.1 104576 103140 -2 - 1437 Pantothenate:Na+ symporter (TC 2.A.21.1.1) CBSS-221988.1.peg.1679;
Coenzyme A Biosynthesis
fig|6666666.229911.peg.1799 CDS AEJQ02000029.1 104845 104573 -1 - 273 FIG003021: Membrane protein CBSS-221988.1.peg.1679
fig|6666666.229911.peg.1800 CDS AEJQ02000029.1 106257 104869 -3 - 1389 FOG: TPR repeat - none -
fig|6666666.229911.peg.1801 CDS AEJQ02000029.1 106990 106376 -1 - 615 Periplasmic protein TonB, links inner and outer membranes - none -
fig|6666666.229911.peg.1802 CDS AEJQ02000029.1 107141 106965 -2 - 177 hypothetical protein - none -
fig|6666666.229911.peg.1803 CDS AEJQ02000029.1 107330 107196 -2 - 135 hypothetical protein - none -
fig|6666666.229911.peg.1804 CDS AEJQ02000029.1 108785 107439 -2 - 1347 Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14) CBSS-221988.1.peg.1679;
Fatty Acid Biosynthesis FASII
fig|6666666.229911.peg.1805 CDS AEJQ02000029.1 109295 108828 -2 - 468 Biotin carboxyl carrier protein of acetyl-CoA carboxylase CBSS-221988.1.peg.1679;
Fatty Acid Biosynthesis FASII
fig|6666666.229911.peg.1806 CDS AEJQ02000029.1 109312 109464 1 + 153 hypothetical protein - none -
fig|6666666.229911.peg.1807 CDS AEJQ02000029.1 109895 109419 -2 - 477 3-dehydroquinate dehydratase II (EC 4.2.1.10) CBSS-221988.1.peg.1679;
Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate);
Quinate degradation
fig|6666666.229911.peg.1808 CDS AEJQ02000029.1 110995 109994 -1 - 1002 O-succinylbenzoate synthase (EC 4.2.1.113) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo;
Muconate lactonizing enzyme family
fig|6666666.229911.peg.1809 CDS AEJQ02000029.1 111305 110976 -2 - 330 Nucleotidyltransferase (EC 2.7.7.-) - none -
fig|6666666.229911.peg.1810 CDS AEJQ02000029.1 111706 111287 -1 - 420 Nucleotidyltransferase substrate binding protein, HI0074 - none -
fig|6666666.229911.peg.1811 CDS AEJQ02000029.1 112603 111746 -1 - 858 Naphthoate synthase (EC 4.1.3.36) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229911.peg.1812 CDS AEJQ02000029.1 113482 112715 -1 - 768 Triosephosphate isomerase (EC 5.3.1.1) CBSS-331978.3.peg.2915;
Glycolysis and Gluconeogenesis
fig|6666666.229911.peg.1813 CDS AEJQ02000029.1 113655 114098 3 + 444 Histone acetyltransferase HPA2 and related acetyltransferases CBSS-216591.1.peg.168
fig|6666666.229911.peg.1814 CDS AEJQ02000029.1 115539 114172 -3 - 1368 Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22) Heme and Siroheme Biosynthesis
fig|6666666.229911.peg.1815 CDS AEJQ02000029.1 115992 115558 -3 - 435 Periplasmic/membrane protein associated with DUF414 - none -
fig|6666666.229911.peg.1816 CDS AEJQ02000029.1 116565 116005 -3 - 561 Protein of unknown function DUF414 - none -
fig|6666666.229911.peg.1817 CDS AEJQ02000029.1 117193 116666 -1 - 528 tRNA-specific adenosine-34 deaminase (EC 3.5.4.-) tRNA modification Bacteria;
tRNA processing;
tRNAmodification position 34
fig|6666666.229911.peg.1818 CDS AEJQ02000029.1 118370 117519 -2 - 852 Thymidylate synthase (EC 2.1.1.45) Folate Biosynthesis;
pyrimidine conversions
fig|6666666.229911.peg.1819 CDS AEJQ02000029.1 119164 118367 -1 - 798 Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-) Lipoprotein Biosynthesis
fig|6666666.229911.peg.1820 CDS AEJQ02000029.1 119970 119173 -3 - 798 Protein of unknown function DUF81 - none -
fig|6666666.229911.peg.1821 CDS AEJQ02000029.1 120572 119973 -2 - 600 Adenosine (5@1)-pentaphospho-(5@1@1)-adenosine pyrophosphohydrolase (EC 3.6.1.-) CBSS-224911.1.peg.435;
CBSS-364106.7.peg.3204;
Nudix proteins (nucleoside triphosphate hydrolases);
Phosphoglycerate mutase protein family
fig|6666666.229911.peg.1822 CDS AEJQ02000029.1 120792 121211 3 + 420 Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229911.peg.1823 CDS AEJQ02000029.1 121222 122730 1 + 1509 Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229911.peg.1824 CDS AEJQ02000029.1 122727 123623 3 + 897 Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229911.peg.1825 CDS AEJQ02000029.1 123713 124585 2 + 873 Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229911.peg.1826 CDS AEJQ02000029.1 124668 125600 3 + 933 Ribokinase (EC 2.7.1.15) D-ribose utilization;
Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.229911.peg.1827 CDS AEJQ02000029.1 125907 125698 -3 - 210 Cold shock protein CspG Cold shock, CspA family of proteins
fig|6666666.229911.peg.1828 CDS AEJQ02000029.1 127799 126354 -2 - 1446 Glutamyl-tRNA synthetase (EC 6.1.1.17) Heme and Siroheme Biosynthesis;
tRNA aminoacylation, Glu and Gln
fig|6666666.229911.peg.1829 CDS AEJQ02000029.1 128487 129275 3 + 789 Mannosyltransferase OCH1 and related enzymes - none -
fig|6666666.229911.peg.1830 CDS AEJQ02000029.1 129388 130764 1 + 1377 Argininosuccinate lyase (EC 4.3.2.1) - none -
fig|6666666.229911.peg.1831 CDS AEJQ02000029.1 131066 132415 2 + 1350 NADP-specific glutamate dehydrogenase (EC 1.4.1.4) Arginine and Ornithine Degradation;
Glutamate dehydrogenases;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Proline Synthesis
fig|6666666.229911.peg.1832 CDS AEJQ02000029.1 132904 134358 1 + 1455 Catalase (EC 1.11.1.6) Oxidative stress;
Protection from Reactive Oxygen Species
fig|6666666.229911.peg.1833 CDS AEJQ02000029.1 135189 135031 -3 - 159 hypothetical protein - none -
fig|6666666.229911.peg.1834 CDS AEJQ02000029.1 138963 135487 -3 - 3477 DNA polymerase III alpha subunit (EC 2.7.7.7) - none -
fig|6666666.229911.peg.1835 CDS AEJQ02000029.1 138928 139107 1 + 180 hypothetical protein - none -
fig|6666666.229911.peg.1836 CDS AEJQ02000029.1 139162 140088 1 + 927 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) Biotin biosynthesis;
Biotin synthesis cluster
fig|6666666.229911.peg.1837 CDS AEJQ02000029.1 140060 140962 2 + 903 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) Biotin biosynthesis;
Biotin synthesis cluster
fig|6666666.229911.peg.1838 CDS AEJQ02000029.1 140979 141095 3 + 117 hypothetical protein - none -
fig|6666666.229911.peg.1839 CDS AEJQ02000029.1 141751 147204 1 + 5454 Autotransporter adhesin - none -
fig|6666666.229911.peg.1840 CDS AEJQ02000029.1 147458 149584 2 + 2127 Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) Ribonucleotide reduction
fig|6666666.229911.peg.1841 CDS AEJQ02000029.1 149765 149884 2 + 120 hypothetical protein - none -
fig|6666666.229911.peg.1842 CDS AEJQ02000029.1 150152 150027 -2 - 126 hypothetical protein - none -
fig|6666666.229911.peg.1843 CDS AEJQ02000029.1 150186 150653 3 + 468 Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) Ribonucleotide reduction
fig|6666666.229911.peg.1844 CDS AEJQ02000029.1 151468 150680 -1 - 789 Putative deoxyribonuclease YjjV Deoxyribose and Deoxynucleoside Catabolism;
YcfH
fig|6666666.229911.peg.1845 CDS AEJQ02000029.1 151752 151471 -3 - 282 hypothetical protein - none -
fig|6666666.229911.peg.1846 CDS AEJQ02000029.1 151900 151745 -1 - 156 hypothetical protein - none -
fig|6666666.229911.peg.1847 CDS AEJQ02000029.1 152506 151994 -1 - 513 Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase;
Queuosine-Archaeosine Biosynthesis
fig|6666666.229911.peg.1848 CDS AEJQ02000029.1 152576 153985 2 + 1410 Cysteinyl-tRNA synthetase (EC 6.1.1.16) tRNA aminoacylation, Cys
fig|6666666.229911.peg.1849 CDS AEJQ02000029.1 155095 154133 -1 - 963 Lipoate synthase Lipoic acid metabolism;
Lipoic acid synthesis cluster
fig|6666666.229911.peg.1850 CDS AEJQ02000029.1 155798 155160 -2 - 639 Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase Lipoic acid metabolism;
Lipoic acid synthesis cluster
fig|6666666.229911.peg.1851 CDS AEJQ02000029.1 156143 155844 -2 - 300 Proposed lipoate regulatory protein YbeD Lipoic acid metabolism;
Lipoic acid synthesis cluster
fig|6666666.229911.peg.1852 CDS AEJQ02000029.1 157406 156216 -2 - 1191 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) Metallocarboxypeptidases (EC 3.4.17.-);
Murein Hydrolases;
Peptidoglycan Biosynthesis
fig|6666666.229911.peg.1853 CDS AEJQ02000029.1 158294 157437 -2 - 858 Rare lipoprotein A precursor Peptidoglycan Biosynthesis
fig|6666666.229911.peg.1854 CDS AEJQ02000029.1 159464 158343 -2 - 1122 Rod shape-determining protein RodA Bacterial Cytoskeleton;
Peptidoglycan Biosynthesis
fig|6666666.229911.peg.1855 CDS AEJQ02000029.1 161412 159451 -3 - 1962 Penicillin-binding protein 2 (PBP-2) 16S rRNA modification within P site of ribosome;
CBSS-83331.1.peg.3039;
Peptidoglycan Biosynthesis
fig|6666666.229911.peg.1856 CDS AEJQ02000029.1 161961 161425 -3 - 537 LSU m3Psi1915 methyltransferase RlmH RNA methylation;
Ribosome biogenesis bacterial;
tRNA modification Bacteria
fig|6666666.229911.peg.1857 CDS AEJQ02000029.1 162260 161952 -2 - 309 Iojap protein - none -
fig|6666666.229911.peg.1858 CDS AEJQ02000029.1 163583 162327 -2 - 1257 ATP-dependent RNA helicase RhlB - none -
fig|6666666.229911.peg.1859 CDS AEJQ02000029.1 163884 165146 3 + 1263 Transcription termination factor Rho Transcription factors bacterial
fig|6666666.229911.peg.1860 CDS AEJQ02000029.1 166500 165271 -3 - 1230 Major facilitator superfamily (MFS) transport protein - none -
fig|6666666.229911.peg.1861 CDS AEJQ02000029.1 166587 166700 3 + 114 hypothetical protein - none -
fig|6666666.229911.peg.1862 CDS AEJQ02000029.1 166965 166735 -3 - 231 Acyl carrier protein Fatty Acid Biosynthesis FASII;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229911.peg.1863 CDS AEJQ02000029.1 167967 167239 -3 - 729 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) Fatty Acid Biosynthesis FASII
fig|6666666.229911.peg.1864 CDS AEJQ02000029.1 168930 167992 -3 - 939 Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39) Fatty Acid Biosynthesis FASII
fig|6666666.229911.peg.1865 CDS AEJQ02000029.1 169987 169037 -1 - 951 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) Fatty Acid Biosynthesis FASII
fig|6666666.229911.peg.1866 CDS AEJQ02000029.1 171053 170034 -2 - 1020 Phosphate:acyl-ACP acyltransferase PlsX Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229911.peg.1867 CDS AEJQ02000029.1 171250 171080 -1 - 171 LSU ribosomal protein L32p Ribosome LSU bacterial
fig|6666666.229911.peg.1868 CDS AEJQ02000029.1 171791 171267 -2 - 525 COG1399 protein, clustered with ribosomal protein L32p - none -
fig|6666666.229911.peg.1869 CDS AEJQ02000029.1 172504 171863 -1 - 642 Dethiobiotin synthetase (EC 6.3.3.3) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229911.peg.1870 CDS AEJQ02000029.1 173244 172504 -3 - 741 Biotin synthesis protein BioC Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229911.peg.1871 CDS AEJQ02000029.1 173912 173262 -2 - 651 Biotin synthesis protein BioG Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229911.peg.1872 CDS AEJQ02000029.1 175068 173893 -3 - 1176 8-amino-7-oxononanoate synthase (EC 2.3.1.47) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229911.peg.1873 CDS AEJQ02000029.1 176350 175061 -1 - 1290 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229911.peg.1874 CDS AEJQ02000029.1 176573 177442 2 + 870 Phosphatidylserine decarboxylase (EC 4.1.1.65) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229911.peg.1875 CDS AEJQ02000029.1 177468 178100 3 + 633 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase
fig|6666666.229911.peg.1876 CDS AEJQ02000029.1 178565 178164 -2 - 402 Glutamate 5-kinase (EC 2.7.2.11) Proline Synthesis
fig|6666666.229911.peg.1877 CDS AEJQ02000029.1 178807 178595 -1 - 213 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA Proline Synthesis;
Proline Synthesis
fig|6666666.229911.peg.1878 CDS AEJQ02000029.1 178967 178788 -2 - 180 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA Proline Synthesis;
Proline Synthesis
fig|6666666.229911.peg.1879 CDS AEJQ02000029.1 179118 179903 3 + 786 FIG023911: putative membrane protein CBSS-316275.9.peg.382
fig|6666666.229911.peg.1880 CDS AEJQ02000029.1 179905 180369 1 + 465 FIG001826: putative inner membrane protein CBSS-316275.9.peg.382
fig|6666666.229911.peg.1881 CDS AEJQ02000029.1 180409 180894 1 + 486 Dihydrofolate reductase (EC 1.5.1.3) 5-FCL-like protein;
Folate Biosynthesis
fig|6666666.229911.peg.1882 CDS AEJQ02000029.1 182324 181014 -2 - 1311 Magnesium and cobalt efflux protein CorC CBSS-56780.10.peg.1536;
Copper homeostasis: copper tolerance;
Glycyl-tRNA synthetase containing cluster;
Magnesium transport;
tRNA-methylthiotransferase containing cluster
fig|6666666.229911.peg.1883 CDS AEJQ02000029.1 182939 182415 -2 - 525 FIG00696143: hypothetical protein - none -
fig|6666666.229911.peg.1884 CDS AEJQ02000029.1 183753 182971 -3 - 783 Putative deoxyribonuclease YcfH YcfH
fig|6666666.229911.peg.1885 CDS AEJQ02000029.1 184740 183757 -3 - 984 DNA polymerase III delta prime subunit (EC 2.7.7.7) - none -
fig|6666666.229911.peg.1886 CDS AEJQ02000029.1 185369 184737 -2 - 633 Thymidylate kinase (EC 2.7.4.9) pyrimidine conversions
fig|6666666.229911.peg.1887 CDS AEJQ02000029.1 186414 185371 -3 - 1044 FIG004453: protein YceG like CBSS-323097.3.peg.2594;
Cluster containing Alanyl-tRNA synthetase;
tRNA modification Bacteria
fig|6666666.229911.peg.1888 CDS AEJQ02000029.1 186891 186553 -3 - 339 Nitrogen regulatory protein P-II Ammonia assimilation
fig|6666666.229911.peg.1889 CDS AEJQ02000029.1 187725 186967 -3 - 759 Transcriptional regulators of sugar metabolism - none -
fig|6666666.229911.peg.1890 CDS AEJQ02000029.1 187918 188823 1 + 906 D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) Polyhydroxybutyrate metabolism
fig|6666666.229911.peg.1891 CDS AEJQ02000029.1 188826 190070 3 + 1245 Predicted pyridoxine biosynthesis protein (probably from glycolaldehide) - none -
fig|6666666.229911.peg.1892 CDS AEJQ02000029.1 190067 190699 2 + 633 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases - none -
fig|6666666.229911.peg.1893 CDS AEJQ02000029.1 190702 191478 1 + 777 Hydroxypyruvate isomerase (EC 5.3.1.22) Glycerate metabolism
fig|6666666.229911.peg.1894 CDS AEJQ02000029.1 191567 192919 2 + 1353 Low-affinity gluconate/H+ symporter GntU D-gluconate and ketogluconates metabolism
fig|6666666.229911.peg.1895 CDS AEJQ02000029.1 192944 194284 2 + 1341 FIG00782214: hypothetical protein - none -
fig|6666666.229911.peg.1896 CDS AEJQ02000029.1 194302 194994 1 + 693 Metal-dependent hydrolase - none -
fig|6666666.229911.peg.1897 CDS AEJQ02000029.1 195042 196166 3 + 1125 Lysophospholipase (EC 3.1.1.5) Triacylglycerol metabolism
fig|6666666.229911.peg.1898 CDS AEJQ02000029.1 196127 196834 2 + 708 Lysophospholipase (EC 3.1.1.5) Triacylglycerol metabolism
fig|6666666.229911.peg.1899 CDS AEJQ02000029.1 197030 197848 2 + 819 HMP-PP hydrolase (pyridoxal phosphatase) Cof, detected in genetic screen for thiamin metabolic genes (PMID:15292217) - none -
fig|6666666.229911.peg.1900 CDS AEJQ02000029.1 200654 198054 -2 - 2601 DNA mismatch repair protein MutS DNA repair, bacterial MutL-MutS system;
DNA repair system including RecA, MutS and a hypothetical protein
fig|6666666.229911.peg.1901 CDS AEJQ02000029.1 201785 200739 -2 - 1047 hypothetical protein - none -
fig|6666666.229911.peg.1902 CDS AEJQ02000029.1 202727 201969 -2 - 759 rRNA small subunit methyltransferase J - none -
fig|6666666.229911.peg.1903 CDS AEJQ02000029.1 203826 202729 -3 - 1098 tRNA (uracil(54)-C5)-methyltransferase (EC 2.1.1.35) RNA methylation;
tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229911.peg.1904 CDS AEJQ02000029.1 204225 203896 -3 - 330 Protein yifE - none -
fig|6666666.229911.peg.1905 CDS AEJQ02000029.1 204902 204285 -2 - 618 Periplasmic thiol:disulfide interchange protein DsbA Biogenesis of c-type cytochromes;
Periplasmic disulfide interchange
fig|6666666.229911.peg.1906 CDS AEJQ02000029.1 205187 204921 -2 - 267 Protein yihD - none -
fig|6666666.229911.peg.1907 CDS AEJQ02000029.1 205271 205855 2 + 585 Molybdopterin-guanine dinucleotide biosynthesis protein MobA Molybdenum cofactor biosynthesis;
ar-431-EC Molybdopterin-guanine dinucleotide biosynthesis
fig|6666666.229911.peg.1908 CDS AEJQ02000029.1 205954 206484 1 + 531 ATPases involved in chromosome partitioning - none -
fig|6666666.229911.peg.1909 CDS AEJQ02000029.1 206596 208125 1 + 1530 Fructose-specific phosphocarrier protein HPr (EC 2.7.1.69) / PTS system, fructose-specific IIA component (EC 2.7.1.69) Fructose utilization;
Fructose utilization
fig|6666666.229911.peg.1910 CDS AEJQ02000029.1 208128 209069 3 + 942 1-phosphofructokinase (EC 2.7.1.56) Fructose utilization
fig|6666666.229911.peg.1911 CDS AEJQ02000029.1 209074 210738 1 + 1665 PTS system, fructose-specific IIB component (EC 2.7.1.69) / PTS system, fructose-specific IIC component (EC 2.7.1.69) Fructose utilization;
Fructose utilization
fig|6666666.229911.peg.1912 CDS AEJQ02000029.1 210760 211038 1 + 279 hypothetical protein - none -
fig|6666666.229911.peg.1913 CDS AEJQ02000029.1 211073 211204 2 + 132 hypothetical protein - none -
fig|6666666.229911.peg.1914 CDS AEJQ02000029.1 211755 211234 -3 - 522 LysR family regulatory protein CidR Murein hydrolase regulation and cell death
fig|6666666.229911.peg.1915 CDS AEJQ02000029.1 211770 212321 3 + 552 NAD(P)H oxidoreductase YRKL (EC 1.6.99.-) @ Putative NADPH-quinone reductase (modulator of drug activity B) @ Flavodoxin 2 Flavodoxin;
Flavodoxin
fig|6666666.229911.peg.1916 CDS AEJQ02000029.1 212361 212699 3 + 339 hypothetical protein - none -
fig|6666666.229911.peg.1917 CDS AEJQ02000029.1 212845 213549 1 + 705 hypothetical protein - none -
fig|6666666.229911.peg.1918 CDS AEJQ02000029.1 213991 214401 1 + 411 Preprotein translocase subunit SecE (TC 3.A.5.1.1) LSU ribosomal proteins cluster
fig|6666666.229911.peg.1919 CDS AEJQ02000029.1 214403 214954 2 + 552 Transcription antitermination protein NusG LSU ribosomal proteins cluster;
Transcription factors bacterial
fig|6666666.229911.peg.1920 CDS AEJQ02000029.1 215110 215538 1 + 429 LSU ribosomal protein L11p (L12e) LSU ribosomal proteins cluster;
Ribosome LSU bacterial
fig|6666666.229911.peg.1921 CDS AEJQ02000029.1 215543 216232 2 + 690 LSU ribosomal protein L1p (L10Ae) LSU ribosomal proteins cluster;
Ribosome LSU bacterial
fig|6666666.229911.peg.1922 CDS AEJQ02000029.1 216247 216423 1 + 177 hypothetical protein - none -
fig|6666666.229911.peg.1923 CDS AEJQ02000029.1 216594 217085 3 + 492 LSU ribosomal protein L10p (P0) LSU ribosomal proteins cluster;
Ribosome LSU bacterial
fig|6666666.229911.peg.1924 CDS AEJQ02000029.1 217137 217508 3 + 372 LSU ribosomal protein L7/L12 (P1/P2) LSU ribosomal proteins cluster;
Ribosome LSU bacterial
fig|6666666.229911.peg.1925 CDS AEJQ02000029.1 217779 221807 3 + 4029 DNA-directed RNA polymerase beta subunit (EC 2.7.7.6) Mycobacterium virulence operon involved in DNA transcription;
RNA polymerase bacterial
fig|6666666.229911.peg.1926 CDS AEJQ02000029.1 221910 226178 3 + 4269 DNA-directed RNA polymerase beta@1 subunit (EC 2.7.7.6) Mycobacterium virulence operon involved in DNA transcription;
RNA polymerase bacterial
fig|6666666.229911.peg.1927 CDS AEJQ02000030.1 953 135 -2 - 819 Peptide transport system ATP-binding protein SapF - none -
fig|6666666.229911.peg.1928 CDS AEJQ02000030.1 2009 957 -2 - 1053 Peptide transport system ATP-binding protein SapD - none -
fig|6666666.229911.peg.1929 CDS AEJQ02000030.1 2904 2017 -3 - 888 Peptide transport system permease protein SapC - none -
fig|6666666.229911.peg.1930 CDS AEJQ02000030.1 3859 2894 -1 - 966 Peptide transport system permease protein SapB - none -
fig|6666666.229911.peg.1931 CDS AEJQ02000030.1 5490 3859 -3 - 1632 Peptide transport periplasmic protein sapA (TC 3.A.1.5.5) - none -
fig|6666666.229911.peg.1932 CDS AEJQ02000030.1 5756 7171 2 + 1416 Conserved protein YcjX with nucleoside triphosphate hydrolase domain A conserved operon linked to TyrR and possibly involved in virulence
fig|6666666.229911.peg.1933 CDS AEJQ02000030.1 7185 8264 3 + 1080 Membrane protein YcjF A conserved operon linked to TyrR and possibly involved in virulence
fig|6666666.229911.peg.1934 CDS AEJQ02000030.1 8348 9307 2 + 960 Transcriptional repressor protein TyrR Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate);
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229911.peg.1935 CDS AEJQ02000030.1 9438 9304 -3 - 135 hypothetical protein - none -
fig|6666666.229911.peg.1936 CDS AEJQ02000030.1 9672 9523 -3 - 150 GTP-binding protein HflX Hfl operon
fig|6666666.229911.peg.1937 CDS AEJQ02000030.1 9983 9687 -2 - 297 RNA-binding protein Hfq Hfl operon;
Polyadenylation bacterial
fig|6666666.229911.peg.1938 CDS AEJQ02000030.1 11047 10103 -1 - 945 tRNA dimethylallyltransferase (EC 2.5.1.75) tRNA modification Bacteria;
tRNA processing
fig|6666666.229911.peg.1939 CDS AEJQ02000030.1 12912 11062 -3 - 1851 DNA mismatch repair protein MutL DNA repair, bacterial MutL-MutS system
fig|6666666.229911.peg.1940 CDS AEJQ02000030.1 14399 12912 -2 - 1488 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) Murein Hydrolases;
Recycling of Peptidoglycan Amino Acids
fig|6666666.229911.peg.1941 CDS AEJQ02000030.1 14848 14396 -1 - 453 TsaE protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA Scaffold proteins for [4Fe-4S] cluster assembly (MRP family);
YjeE
fig|6666666.229911.peg.1942 CDS AEJQ02000030.1 14847 14993 3 + 147 hypothetical protein - none -
fig|6666666.229911.peg.1943 CDS AEJQ02000030.1 16839 15046 -3 - 1794 Mlr4739 protein - none -
fig|6666666.229911.peg.1944 CDS AEJQ02000030.1 18147 17227 -3 - 921 RfbJ protein - none -
fig|6666666.229911.peg.1945 CDS AEJQ02000030.1 19667 18159 -2 - 1509 conserved domain protein - none -
fig|6666666.229911.peg.1946 CDS AEJQ02000030.1 20271 19654 -3 - 618 Glycerate kinase (EC 2.7.1.31) D-galactarate, D-glucarate and D-glycerate catabolism;
D-galactarate, D-glucarate and D-glycerate catabolism - gjo;
Glycerate metabolism;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Glycine and Serine Utilization;
Serine-glyoxylate cycle
fig|6666666.229911.peg.1947 CDS AEJQ02000030.1 21814 20300 -1 - 1515 Dca - none -
fig|6666666.229911.peg.1948 CDS AEJQ02000030.1 22881 22333 -3 - 549 3@1-to-5@1 oligoribonuclease (orn) RNA processing and degradation, bacterial
fig|6666666.229911.peg.1949 CDS AEJQ02000030.1 22952 23992 2 + 1041 Ribosome small subunit-stimulated GTPase EngC - none -
fig|6666666.229911.peg.1950 CDS AEJQ02000030.1 24213 24470 3 + 258 Phosphotransferase system, phosphocarrier protein HPr Fructose utilization;
Mannitol Utilization
fig|6666666.229911.peg.1951 CDS AEJQ02000030.1 24584 26311 2 + 1728 Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) Fructose utilization;
Mannitol Utilization
fig|6666666.229911.peg.1952 CDS AEJQ02000030.1 26372 26872 2 + 501 PTS system, glucose-specific IIA component - none -
fig|6666666.229911.peg.1953 CDS AEJQ02000030.1 29037 26998 -3 - 2040 Oligopeptidase A (EC 3.4.24.70) Protein degradation
fig|6666666.229911.peg.1954 CDS AEJQ02000030.1 29179 29544 1 + 366 FIG039061: hypothetical protein related to heme utilization - none -
fig|6666666.229911.peg.1955 CDS AEJQ02000030.1 29600 31138 2 + 1539 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229911.peg.1956 CDS AEJQ02000030.1 32000 31413 -2 - 588 Aminodeoxychorismate lyase (EC 4.1.3.38) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Folate Biosynthesis;
Tryptophan synthesis
fig|6666666.229911.peg.1957 CDS AEJQ02000030.1 32977 32003 -1 - 975 Para-aminobenzoate synthase, aminase component (EC 2.6.1.85) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Folate Biosynthesis;
Tryptophan synthesis
fig|6666666.229911.peg.1958 CDS AEJQ02000030.1 33079 33645 1 + 567 Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Folate Biosynthesis;
Tryptophan synthesis
fig|6666666.229911.peg.1959 CDS AEJQ02000030.1 33801 34745 3 + 945 Hydroxypyruvate reductase (EC 1.1.1.81) Glycerate metabolism;
Glycolate, glyoxylate interconversions
fig|6666666.229911.peg.1960 CDS AEJQ02000030.1 35288 36472 2 + 1185 Lipoprotein releasing system transmembrane protein LolC Lipopolysaccharide assembly;
Lipoprotein sorting system
fig|6666666.229911.peg.1961 CDS AEJQ02000030.1 36487 37173 1 + 687 Lipoprotein releasing system ATP-binding protein LolD Lipopolysaccharide assembly;
Lipoprotein sorting system
fig|6666666.229911.peg.1962 CDS AEJQ02000030.1 37173 38423 3 + 1251 Lipoprotein releasing system transmembrane protein LolE Lipopolysaccharide assembly;
Lipoprotein sorting system
fig|6666666.229911.peg.1963 CDS AEJQ02000030.1 38524 39603 1 + 1080 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha (EC 2.5.1.54) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229911.peg.1964 CDS AEJQ02000030.1 39734 39612 -2 - 123 hypothetical protein - none -
fig|6666666.229911.peg.1965 CDS AEJQ02000030.1 39749 41155 2 + 1407 Replicative DNA helicase (EC 3.6.1.-) - none -
fig|6666666.229911.peg.1966 CDS AEJQ02000030.1 41179 42261 1 + 1083 Alanine racemase (EC 5.1.1.1) ## biosynthetic Alanine biosynthesis;
Pyruvate Alanine Serine Interconversions
fig|6666666.229911.peg.1967 CDS AEJQ02000030.1 42277 43926 1 + 1650 Glucose-6-phosphate isomerase (EC 5.3.1.9) Glycolysis and Gluconeogenesis
fig|6666666.229911.peg.1968 CDS AEJQ02000030.1 44066 44539 2 + 474 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster
fig|6666666.229911.peg.1969 CDS AEJQ02000030.1 44546 44971 2 + 426 Transcription termination protein NusB Riboflavin synthesis cluster;
Transcription factors bacterial
fig|6666666.229911.peg.1970 CDS AEJQ02000030.1 44990 45973 2 + 984 Thiamine-monophosphate kinase (EC 2.7.4.16) 5-FCL-like protein;
Riboflavin synthesis cluster;
Thiamin biosynthesis
fig|6666666.229911.peg.1971 CDS AEJQ02000030.1 45983 46474 2 + 492 Phosphatidylglycerophosphatase A (EC 3.1.3.27) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Riboflavin synthesis cluster
fig|6666666.229911.peg.1972 CDS AEJQ02000030.1 46483 47106 1 + 624 L-lysine permease - none -
fig|6666666.229911.peg.1973 CDS AEJQ02000030.1 47128 47940 1 + 813 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229911.peg.1974 CDS AEJQ02000030.1 48355 48107 -1 - 249 Ferredoxin Soluble cytochromes and functionally related electron carriers
fig|6666666.229911.peg.1975 CDS AEJQ02000030.1 48692 48423 -2 - 270 hypothetical protein - none -
fig|6666666.229911.peg.1976 CDS AEJQ02000030.1 49844 48714 -2 - 1131 Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) Ribonucleotide reduction
fig|6666666.229911.peg.1977 CDS AEJQ02000030.1 50702 50046 -2 - 657 hypothetical protein - none -
fig|6666666.229911.peg.1978 CDS AEJQ02000030.1 53026 50756 -1 - 2271 Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) Ribonucleotide reduction
fig|6666666.229911.peg.1979 CDS AEJQ02000030.1 54801 53329 -3 - 1473 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229911.peg.1980 CDS AEJQ02000030.1 54939 55061 3 + 123 hypothetical protein - none -
fig|6666666.229911.peg.1981 CDS AEJQ02000030.1 55072 56100 1 + 1029 Ferric iron ABC transporter, iron-binding protein Iron acquisition in Streptococcus
fig|6666666.229911.peg.1982 CDS AEJQ02000030.1 56152 58185 1 + 2034 Ferric iron ABC transporter, permease protein Iron acquisition in Streptococcus
fig|6666666.229911.peg.1983 CDS AEJQ02000030.1 58169 59209 2 + 1041 Sulfate and thiosulfate import ATP-binding protein CysA (EC 3.6.3.25) Cysteine Biosynthesis;
Uptake of selenate and selenite
fig|6666666.229911.peg.1984 CDS AEJQ02000030.1 59284 59168 -1 - 117 hypothetical protein - none -
fig|6666666.229911.peg.1985 CDS AEJQ02000030.1 61320 59269 -3 - 2052 Periplasmic alpha-amylase (EC 3.2.1.1) Maltose and Maltodextrin Utilization
fig|6666666.229911.peg.1986 CDS AEJQ02000030.1 62305 61415 -1 - 891 Maltose/maltodextrin ABC transporter, permease protein MalG Maltose and Maltodextrin Utilization
fig|6666666.229911.peg.1987 CDS AEJQ02000030.1 63871 62327 -1 - 1545 Maltose/maltodextrin ABC transporter, permease protein MalF Maltose and Maltodextrin Utilization
fig|6666666.229911.peg.1988 CDS AEJQ02000030.1 64026 63895 -3 - 132 hypothetical protein - none -
fig|6666666.229911.peg.1989 CDS AEJQ02000030.1 65185 63995 -1 - 1191 Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein MalE Alpha-Amylase locus in Streptocococcus;
Bacterial Chemotaxis;
Maltose and Maltodextrin Utilization
fig|6666666.229911.peg.1990 CDS AEJQ02000030.1 65642 66760 2 + 1119 Maltose/maltodextrin transport ATP-binding protein MalK (EC 3.6.3.19) Maltose and Maltodextrin Utilization
fig|6666666.229911.peg.1991 CDS AEJQ02000030.1 66837 68120 3 + 1284 Maltoporin (maltose/maltodextrin high-affinity receptor, phage lambda receptor protein) Maltose and Maltodextrin Utilization
fig|6666666.229911.peg.1992 CDS AEJQ02000030.1 68206 69105 1 + 900 Maltose operon periplasmic protein MalM Maltose and Maltodextrin Utilization
fig|6666666.229911.peg.1993 CDS AEJQ02000030.1 69176 69307 2 + 132 hypothetical protein - none -
fig|6666666.229911.peg.1994 CDS AEJQ02000030.1 70214 69483 -2 - 732 Molybdopterin biosynthesis protein MoeB Molybdenum cofactor biosynthesis
fig|6666666.229911.peg.1995 CDS AEJQ02000030.1 70835 70230 -2 - 606 Molybdopterin biosynthesis protein MoeA Molybdenum cofactor biosynthesis
fig|6666666.229911.peg.1996 CDS AEJQ02000030.1 71488 72144 1 + 657 GTP cyclohydrolase I (EC 3.5.4.16) type 1 Folate Biosynthesis;
Folate biosynthesis cluster;
Molybdenum cofactor biosynthesis;
Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229911.peg.1997 CDS AEJQ02000030.1 73687 72245 -1 - 1443 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) Metallocarboxypeptidases (EC 3.4.17.-);
Murein Hydrolases;
Peptidoglycan Biosynthesis
fig|6666666.229911.peg.1998 CDS AEJQ02000030.1 73769 74245 2 + 477 Transcription elongation factor GreA Transcription factors bacterial
fig|6666666.229911.peg.1999 CDS AEJQ02000030.1 74620 74318 -1 - 303 FIG004454: RNA binding protein - none -
fig|6666666.229911.peg.2000 CDS AEJQ02000030.1 74788 75087 1 + 300 Phage-related protein - none -
fig|6666666.229911.peg.2001 CDS AEJQ02000030.1 75084 75380 3 + 297 FIG045511: hypothetical antitoxin (to FIG022160: hypothetical toxin) - none -
fig|6666666.229911.peg.2002 CDS AEJQ02000030.1 76027 75413 -1 - 615 Riboflavin synthase eubacterial/eukaryotic (EC 2.5.1.9) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster;
riboflavin to FAD
fig|6666666.229911.peg.2003 CDS AEJQ02000030.1 76054 77451 1 + 1398 Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps Multidrug Resistance Efflux Pumps;
Riboflavin, FMN and FAD metabolism in plants
fig|6666666.229911.peg.2004 CDS AEJQ02000030.1 78234 77755 -3 - 480 Cys-tRNA(Pro) deacylase YbaK tRNA aminoacylation, Pro
fig|6666666.229911.peg.2005 CDS AEJQ02000030.1 78295 79098 1 + 804 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch;
Threonine and Homoserine Biosynthesis
fig|6666666.229911.peg.2006 CDS AEJQ02000030.1 79083 79532 3 + 450 Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229911.peg.2007 CDS AEJQ02000030.1 79501 80304 1 + 804 Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229911.peg.2008 CDS AEJQ02000030.1 80307 80921 3 + 615 ABC transporter ATP-binding protein - none -
fig|6666666.229911.peg.2009 CDS AEJQ02000030.1 80918 81778 2 + 861 Molybdenum transport system protein ModD Molybdenum cofactor biosynthesis
fig|6666666.229911.peg.2010 CDS AEJQ02000030.1 82074 83522 3 + 1449 TldD protein, part of TldE/TldD proteolytic complex CBSS-354.1.peg.2917;
Putative TldE-TldD proteolytic complex
fig|6666666.229911.peg.2011 CDS AEJQ02000030.1 83573 89344 2 + 5772 FIG00904191: hypothetical protein - none -
fig|6666666.229911.peg.2012 CDS AEJQ02000030.1 89477 90526 2 + 1050 Putative membrane protein YeiH - none -
fig|6666666.229911.peg.2013 CDS AEJQ02000030.1 90694 93003 1 + 2310 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) DNA uptake cluster;
Peptidoglycan Biosynthesis;
Type IV pilus
fig|6666666.229911.peg.2014 CDS AEJQ02000030.1 93787 93113 -1 - 675 3-keto-L-gulonate 6-phosphate decarboxylase L-ascorbate utilization (and related gene clusters)
fig|6666666.229911.peg.2015 CDS AEJQ02000030.1 94325 93864 -2 - 462 Ascorbate-specific PTS system, EIIA component (EC 2.7.1.-) L-ascorbate utilization (and related gene clusters)
fig|6666666.229911.peg.2016 CDS AEJQ02000030.1 96152 94380 -2 - 1773 Ascorbate-specific PTS system, EIIC component L-ascorbate utilization (and related gene clusters)
fig|6666666.229911.peg.2017 CDS AEJQ02000030.1 96500 97591 2 + 1092 Probable L-ascorbate-6-phosphate lactonase UlaG (EC 3.1.1.-) (L-ascorbate utilization protein G) L-ascorbate utilization (and related gene clusters)
fig|6666666.229911.peg.2018 CDS AEJQ02000030.1 97683 98432 3 + 750 Ascorbate utilization transcriptional regulator UlaR, HTH-type L-ascorbate utilization (and related gene clusters)
fig|6666666.229911.peg.2019 CDS AEJQ02000030.1 98473 99333 1 + 861 L-xylulose 5-phosphate 3-epimerase (EC 5.1.3.-) L-ascorbate utilization (and related gene clusters)
fig|6666666.229911.peg.2020 CDS AEJQ02000030.1 99327 100022 3 + 696 L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) L-ascorbate utilization (and related gene clusters)
fig|6666666.229911.peg.2021 CDS AEJQ02000030.1 101319 100105 -3 - 1215 Tyrosine-specific transport protein - none -
fig|6666666.229911.peg.2022 CDS AEJQ02000030.1 101581 101808 1 + 228 Beta-galactosidase (EC 3.2.1.23) Galactosylceramide and Sulfatide metabolism;
Lactose and Galactose Uptake and Utilization;
Lactose utilization
fig|6666666.229911.peg.2023 CDS AEJQ02000030.1 102335 102072 -2 - 264 Glutaredoxin 1 Glutaredoxins;
Glutathione: Redox cycle
fig|6666666.229911.peg.2024 CDS AEJQ02000030.1 102462 103196 3 + 735 Oxygen-insensitive NADPH nitroreductase (EC 1.-.-.-) - none -
fig|6666666.229911.peg.2025 CDS AEJQ02000030.1 103287 104120 3 + 834 Ribosomal protein S6 glutaminyl transferase Ribosome biogenesis bacterial
fig|6666666.229911.peg.2026 CDS AEJQ02000030.1 104173 104364 1 + 192 hypothetical protein - none -
fig|6666666.229911.peg.2027 CDS AEJQ02000030.1 105021 104416 -3 - 606 FIG026291: Hypothetical periplasmic protein - none -
fig|6666666.229911.peg.2028 CDS AEJQ02000030.1 106519 105125 -1 - 1395 Fumarate hydratase class II (EC 4.2.1.2) TCA Cycle
fig|6666666.229911.peg.2029 CDS AEJQ02000030.1 106729 107178 1 + 450 DNA polymerase III chi subunit (EC 2.7.7.7) CBSS-208964.1.peg.3826
fig|6666666.229911.peg.2030 CDS AEJQ02000030.1 107217 107345 3 + 129 RNA-binding domain protein - none -
fig|6666666.229911.peg.2031 CDS AEJQ02000030.1 107373 107501 3 + 129 RNA-binding domain protein - none -
fig|6666666.229911.peg.2032 CDS AEJQ02000030.1 108220 111084 1 + 2865 Valyl-tRNA synthetase (EC 6.1.1.9) CBSS-208964.1.peg.3826;
tRNA aminoacylation, Val
fig|6666666.229911.peg.2033 CDS AEJQ02000030.1 111151 112044 1 + 894 hypothetical protein - none -
fig|6666666.229911.peg.2034 CDS AEJQ02000030.1 112163 112041 -2 - 123 HipA protein Persister Cells
fig|6666666.229911.peg.2035 CDS AEJQ02000030.1 112279 112163 -1 - 117 HipA protein Persister Cells
fig|6666666.229911.peg.2036 CDS AEJQ02000030.1 112611 112273 -3 - 339 HipA protein Persister Cells
fig|6666666.229911.peg.2037 CDS AEJQ02000030.1 112942 112661 -1 - 282 HipB protein Persister Cells
fig|6666666.229911.peg.2038 CDS AEJQ02000030.1 114600 113086 -3 - 1515 Inner membrane component of tripartite multidrug resistance system Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria
fig|6666666.229911.peg.2039 CDS AEJQ02000030.1 115773 114613 -3 - 1161 Membrane fusion component of tripartite multidrug resistance system Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria
fig|6666666.229911.peg.2040 CDS AEJQ02000030.1 115982 116464 2 + 483 Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1) Oxidative stress;
Oxidative stress;
Oxidative stress
fig|6666666.229911.peg.2041 CDS AEJQ02000030.1 118562 116583 -2 - 1980 Exoribonuclease II (EC 3.1.13.1) RNA processing and degradation, bacterial
fig|6666666.229911.peg.2042 CDS AEJQ02000030.1 119423 118635 -2 - 789 Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9) Fatty Acid Biosynthesis FASII
fig|6666666.229911.peg.2043 CDS AEJQ02000030.1 120371 119514 -2 - 858 FIG137478: Hypothetical protein YbgI - none -
fig|6666666.229911.peg.2044 CDS AEJQ02000030.1 121168 120494 -1 - 675 Queuosine Biosynthesis QueE Radical SAM Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229911.peg.2045 CDS AEJQ02000030.1 121554 121129 -3 - 426 6-carboxytetrahydropterin synthase (EC 4.1.2.50) @ Queuosine biosynthesis QueD, PTPS-I Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229911.peg.2046 CDS AEJQ02000030.1 123252 121744 -3 - 1509 Lysyl-tRNA synthetase (class II) (EC 6.1.1.6) tRNA aminoacylation, Lys
fig|6666666.229911.peg.2047 CDS AEJQ02000030.1 124211 123309 -2 - 903 Peptide chain release factor 2; programmed frameshift-containing Programmed frameshift;
Programmed frameshift;
Translation termination factors bacterial
fig|6666666.229911.peg.2048 CDS AEJQ02000030.1 124491 124330 -3 - 162 hypothetical protein - none -
fig|6666666.229911.peg.2049 CDS AEJQ02000030.1 124575 125258 3 + 684 Thiol:disulfide interchange protein DsbC Periplasmic disulfide interchange
fig|6666666.229911.peg.2050 CDS AEJQ02000030.1 125271 126992 3 + 1722 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) DNA Repair Base Excision;
DNA repair, bacterial RecFOR pathway
fig|6666666.229911.peg.2051 CDS AEJQ02000030.1 127025 127672 2 + 648 Thiol-disulfide isomerase and thioredoxins - none -
fig|6666666.229911.peg.2052 CDS AEJQ02000030.1 127689 128381 3 + 693 5@1-methylthioadenosine nucleosidase (EC 3.2.2.16) / S-adenosylhomocysteine nucleosidase (EC 3.2.2.9) Adenosyl nucleosidases;
Adenosyl nucleosidases;
Methionine Biosynthesis;
Methionine Degradation;
Polyamine Metabolism
fig|6666666.229911.peg.2053 CDS AEJQ02000030.1 128560 129255 1 + 696 Additional periplasmic component NikK of nickel ECF transporter Transport of Nickel and Cobalt
fig|6666666.229911.peg.2054 CDS AEJQ02000030.1 129262 129765 1 + 504 Additional component NikL of nickel ECF transporter Transport of Nickel and Cobalt
fig|6666666.229911.peg.2055 CDS AEJQ02000030.1 129765 130418 3 + 654 Substrate-specific component NikM of nickel ECF transporter ECF class transporters;
Transport of Nickel and Cobalt
fig|6666666.229911.peg.2056 CDS AEJQ02000030.1 130415 131110 2 + 696 Transmembrane component NikQ of energizing module of nickel ECF transporter ECF class transporters;
Transport of Nickel and Cobalt
fig|6666666.229911.peg.2057 CDS AEJQ02000030.1 131076 131699 3 + 624 ATPase component NikO of energizing module of nickel ECF transporter ECF class transporters;
Transport of Nickel and Cobalt
fig|6666666.229911.peg.2058 CDS AEJQ02000030.1 131778 132587 3 + 810 [NiFe] hydrogenase nickel incorporation-associated protein HypB G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229911.peg.2059 CDS AEJQ02000030.1 132614 133726 2 + 1113 [NiFe] hydrogenase metallocenter assembly protein HypD G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229911.peg.2060 CDS AEJQ02000030.1 133726 134739 1 + 1014 [NiFe] hydrogenase metallocenter assembly protein HypE G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229911.peg.2061 CDS AEJQ02000030.1 134761 134913 1 + 153 hypothetical protein - none -
fig|6666666.229911.peg.2062 CDS AEJQ02000030.1 135903 135766 -3 - 138 hypothetical protein - none -
fig|6666666.229911.peg.2063 CDS AEJQ02000030.1 137520 136705 -3 - 816 Shikimate 5-dehydrogenase I gamma (EC 1.1.1.25) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229911.peg.2064 CDS AEJQ02000030.1 138554 137670 -2 - 885 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) 5-FCL-like protein;
Methionine Biosynthesis;
One-carbon metabolism by tetrahydropterines;
Serine-glyoxylate cycle
fig|6666666.229911.peg.2065 CDS AEJQ02000030.1 139796 138729 -2 - 1068 FIG000906: Predicted Permease CBSS-208964.1.peg.3826
fig|6666666.229911.peg.2066 CDS AEJQ02000030.1 140919 139801 -3 - 1119 FIG000988: Predicted permease CBSS-208964.1.peg.3826
fig|6666666.229911.peg.2067 CDS AEJQ02000030.1 141056 142546 2 + 1491 Cytosol aminopeptidase PepA (EC 3.4.11.1) Aminopeptidases (EC 3.4.11.-);
CBSS-208964.1.peg.3826;
Dehydrogenase complexes
fig|6666666.229911.peg.2068 CDS AEJQ02000030.1 143752 142691 -1 - 1062 Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229911.peg.2069 CDS AEJQ02000030.1 144467 143739 -2 - 729 Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229911.peg.2070 CDS AEJQ02000030.1 145310 144546 -2 - 765 Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229911.peg.2071 CDS AEJQ02000030.1 145537 146316 1 + 780 DNA-binding domain of ModE / Molybdate-binding domain of ModE Molybdenum cofactor biosynthesis;
Molybdenum cofactor biosynthesis
fig|6666666.229911.peg.2072 CDS AEJQ02000030.1 146537 147880 2 + 1344 Arsenic efflux pump protein Arsenic resistance
fig|6666666.229911.peg.2073 CDS AEJQ02000030.1 148543 147947 -1 - 597 Nucleotidase YfbR, HD superfamily Housecleaning nucleoside triphosphate pyrophosphatases
fig|6666666.229911.peg.2074 CDS AEJQ02000030.1 149580 148552 -3 - 1029 Outer membrane stress sensor protease DegS Periplasmic Stress Response;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229911.peg.2075 CDS AEJQ02000030.1 150713 149589 -2 - 1125 Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster;
Riboflavin synthesis cluster
fig|6666666.229911.peg.2076 CDS AEJQ02000030.1 151165 150713 -1 - 453 Ribonucleotide reductase transcriptional regulator NrdR Ribonucleotide reduction
fig|6666666.229911.peg.2077 CDS AEJQ02000030.1 152343 151282 -3 - 1062 LSU rRNA 2@1-O-methyl-C2498 methyltransferase RlmM RNA methylation
fig|6666666.229911.peg.2078 CDS AEJQ02000030.1 153268 152363 -1 - 906 Glycine cleavage system transcriptional activator GcvA LysR-family proteins in Escherichia coli;
Orphan regulatory proteins
fig|6666666.229911.peg.2079 CDS AEJQ02000030.1 153730 154749 1 + 1020 Branched-chain amino acid aminotransferase (EC 2.6.1.42) Alanine biosynthesis;
Pyruvate Alanine Serine Interconversions
fig|6666666.229911.peg.2080 CDS AEJQ02000030.1 155117 155857 2 + 741 FIG00698611: hypothetical protein - none -
fig|6666666.229911.peg.2081 CDS AEJQ02000030.1 156948 156013 -3 - 936 Malate dehydrogenase (EC 1.1.1.37) Serine-glyoxylate cycle;
TCA Cycle
fig|6666666.229911.peg.2082 CDS AEJQ02000030.1 157204 157671 1 + 468 Arginine pathway regulatory protein ArgR, repressor of arg regulon Arginine Deiminase Pathway;
Arginine and Ornithine Degradation
fig|6666666.229911.peg.2083 CDS AEJQ02000030.1 157695 158582 3 + 888 Cell division inhibitor CBSS-83333.1.peg.946;
Persister Cells
fig|6666666.229911.peg.2084 CDS AEJQ02000030.1 158773 159354 1 + 582 Electron transport complex protein RnfA Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229911.peg.2085 CDS AEJQ02000030.1 159354 159944 3 + 591 Electron transport complex protein RnfB Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229911.peg.2086 CDS AEJQ02000030.1 159945 161897 3 + 1953 Electron transport complex protein RnfC Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229911.peg.2087 CDS AEJQ02000030.1 161908 162987 1 + 1080 Electron transport complex protein RnfD Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229911.peg.2088 CDS AEJQ02000030.1 162994 163614 1 + 621 Electron transport complex protein RnfG Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229911.peg.2089 CDS AEJQ02000030.1 163607 164392 2 + 786 Electron transport complex protein RnfE Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229911.peg.2090 CDS AEJQ02000030.1 164539 165174 1 + 636 Endonuclease III (EC 4.2.99.18) DNA Repair Base Excision
fig|6666666.229911.peg.2091 CDS AEJQ02000030.1 165199 166566 1 + 1368 sodium-dependent transporter - none -
fig|6666666.229911.peg.2092 CDS AEJQ02000030.1 167746 166961 -1 - 786 Zinc ABC transporter, inner membrane permease protein ZnuB - none -
fig|6666666.229911.peg.2093 CDS AEJQ02000030.1 168531 167758 -3 - 774 Zinc ABC transporter, ATP-binding protein ZnuC - none -
fig|6666666.229911.peg.2094 CDS AEJQ02000030.1 168720 170252 3 + 1533 Cell wall endopeptidase, family M23/M37 Glutaredoxins
fig|6666666.229911.peg.2095 CDS AEJQ02000030.1 171118 170360 -1 - 759 Iron(III) dicitrate transport ATP-binding protein FecE (TC 3.A.1.14.1) - none -
fig|6666666.229911.peg.2096 CDS AEJQ02000030.1 172053 171130 -3 - 924 Ferric vibriobactin, enterobactin transport system, permease protein VctG (TC 3.A.1.14.6) - none -
fig|6666666.229911.peg.2097 CDS AEJQ02000030.1 173026 172061 -1 - 966 Ferric anguibactin transport system permease protein fatD - none -
fig|6666666.229911.peg.2098 CDS AEJQ02000030.1 173985 173086 -3 - 900 Iron compound ABC uptake transporter substrate-binding protein PiuA - none -
fig|6666666.229911.peg.2099 CDS AEJQ02000030.1 174240 174058 -3 - 183 hypothetical protein - none -
fig|6666666.229911.peg.2100 CDS AEJQ02000030.1 174214 175170 1 + 957 2@1,3@1-cyclic-nucleotide 2@1-phosphodiesterase (EC 3.1.4.16) Purine conversions;
pyrimidine conversions
fig|6666666.229911.peg.2101 CDS AEJQ02000030.1 175174 176190 1 + 1017 2@1,3@1-cyclic-nucleotide 2@1-phosphodiesterase (EC 3.1.4.16) Purine conversions;
pyrimidine conversions
fig|6666666.229911.peg.2102 CDS AEJQ02000030.1 177058 176264 -1 - 795 formate dehydrogenase formation protein FdhE Formate hydrogenase
fig|6666666.229911.rna.1 RNA AEJQ02000004.1 116 1 -2 - 116 5S RNA - none -
fig|6666666.229911.rna.2 RNA AEJQ02000004.1 3418 376 -1 - 3043 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA - none -
fig|6666666.229911.rna.3 RNA AEJQ02000007.1 82041 81969 -3 - 73 tRNA-Asn-GTT - none -
fig|6666666.229911.rna.4 RNA AEJQ02000007.1 82121 82049 -2 - 73 tRNA-Phe-GAA tRNAs
fig|6666666.229911.rna.5 RNA AEJQ02000011.1 10091 10019 -2 - 73 tRNA-Lys-TTT - none -
fig|6666666.229911.rna.6 RNA AEJQ02000011.1 10230 10147 -3 - 84 tRNA-Leu-TAA - none -
fig|6666666.229911.rna.7 RNA AEJQ02000011.1 10307 10235 -2 - 73 tRNA-Gly-GCC tRNAs
fig|6666666.229911.rna.8 RNA AEJQ02000012.1 27339 27432 3 + 94 tRNA-Ser-GCT - none -
fig|6666666.229911.rna.9 RNA AEJQ02000012.1 27453 27526 3 + 74 tRNA-Arg-ACG tRNAs
fig|6666666.229911.rna.10 RNA AEJQ02000012.1 27584 27657 2 + 74 tRNA-Arg-ACG tRNAs
fig|6666666.229911.rna.11 RNA AEJQ02000014.1 1580 41 -2 - 1540 Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA - none -
fig|6666666.229911.rna.12 RNA AEJQ02000016.1 9008 8935 -2 - 74 tRNA-Lys-CTT - none -
fig|6666666.229911.rna.13 RNA AEJQ02000016.1 9109 9037 -1 - 73 tRNA-Lys-TTT - none -
fig|6666666.229911.rna.14 RNA AEJQ02000016.1 9211 9139 -1 - 73 tRNA-Lys-TTT - none -
fig|6666666.229911.rna.15 RNA AEJQ02000016.1 57269 57183 -2 - 87 tRNA-Ser-TGA - none -
fig|6666666.229911.rna.16 RNA AEJQ02000016.1 64624 64696 1 + 73 tRNA-Gly-GCC tRNAs
fig|6666666.229911.rna.17 RNA AEJQ02000016.1 64708 64778 1 + 71 tRNA-Cys-GCA tRNAs
fig|6666666.229911.rna.18 RNA AEJQ02000016.1 79676 79603 -2 - 74 tRNA-Met-CAT - none -
fig|6666666.229911.rna.19 RNA AEJQ02000017.1 8206 8279 1 + 74 tRNA-Pro-TGG - none -
fig|6666666.229911.rna.20 RNA AEJQ02000017.1 8316 8389 3 + 74 tRNA-Arg-TCT - none -
fig|6666666.229911.rna.21 RNA AEJQ02000020.1 23538 23611 3 + 74 tRNA-Val-GAC tRNAs
fig|6666666.229911.rna.22 RNA AEJQ02000022.1 49147 49064 -1 - 84 tRNA-Leu-CAG tRNAs
fig|6666666.229911.rna.23 RNA AEJQ02000022.1 77412 77330 -3 - 83 tRNA-Leu-GAG tRNAs
fig|6666666.229911.rna.24 RNA AEJQ02000022.1 149970 150043 3 + 74 tRNA-Met-CAT - none -
fig|6666666.229911.rna.25 RNA AEJQ02000022.1 178956 179028 3 + 73 tRNA-Thr-TGT - none -
fig|6666666.229911.rna.26 RNA AEJQ02000022.1 179062 179143 1 + 82 tRNA-Tyr-GTA - none -
fig|6666666.229911.rna.27 RNA AEJQ02000022.1 179187 179258 3 + 72 tRNA-Gly-TCC - none -
fig|6666666.229911.rna.28 RNA AEJQ02000022.1 179265 179337 3 + 73 tRNA-Thr-GGT - none -
fig|6666666.229911.rna.29 RNA AEJQ02000023.1 152890 152817 -1 - 74 tRNA-Met-CAT - none -
fig|6666666.229911.rna.30 RNA AEJQ02000023.1 178606 178535 -1 - 72 tRNA-Gln-TTG - none -
fig|6666666.229911.rna.31 RNA AEJQ02000023.1 178718 178647 -2 - 72 tRNA-Gln-TTG - none -
fig|6666666.229911.rna.32 RNA AEJQ02000023.1 178832 178751 -2 - 82 tRNA-Leu-TAG - none -
fig|6666666.229911.rna.33 RNA AEJQ02000023.1 178914 178841 -3 - 74 tRNA-Met-CAT - none -
fig|6666666.229911.rna.34 RNA AEJQ02000025.1 166 93 -1 - 74 tRNA-Pro-TGG - none -
fig|6666666.229911.rna.35 RNA AEJQ02000025.1 244 172 -1 - 73 tRNA-His-GTG - none -
fig|6666666.229911.rna.36 RNA AEJQ02000025.1 352 279 -1 - 74 tRNA-Arg-CCG tRNAs
fig|6666666.229911.rna.37 RNA AEJQ02000025.1 50293 50365 1 + 73 tRNA-Asn-GTT - none -
fig|6666666.229911.rna.38 RNA AEJQ02000025.1 124915 124997 1 + 83 tRNA-Leu-CAA tRNAs
fig|6666666.229911.rna.39 RNA AEJQ02000025.1 264239 264312 2 + 74 tRNA-Asp-GTC - none -
fig|6666666.229911.rna.40 RNA AEJQ02000025.1 264338 264411 2 + 74 tRNA-Asp-GTC - none -
fig|6666666.229911.rna.41 RNA AEJQ02000026.1 718 628 -1 - 91 tRNA-SeC(p)-TCA - none -
fig|6666666.229911.rna.42 RNA AEJQ02000027.1 108 181 3 + 74 tRNA-Ile-GAT - none -
fig|6666666.229911.rna.43 RNA AEJQ02000027.1 234 306 3 + 73 tRNA-Ala-TGC - none -
fig|6666666.229911.rna.44 RNA AEJQ02000028.1 44314 44400 1 + 87 tRNA-Ser-GGA tRNAs
fig|6666666.229911.rna.45 RNA AEJQ02000028.1 63019 62947 -1 - 73 tRNA-Trp-CCA tRNAs
fig|6666666.229911.rna.46 RNA AEJQ02000028.1 63129 63057 -3 - 73 tRNA-Undet-??? - none -
fig|6666666.229911.rna.47 RNA AEJQ02000028.1 63255 63136 -3 - 120 5S RNA - none -
fig|6666666.229911.rna.48 RNA AEJQ02000029.1 126275 126203 -2 - 73 tRNA-Ala-GGC tRNAs
fig|6666666.229911.rna.49 RNA AEJQ02000029.1 128085 128157 3 + 73 tRNA-Val-TAC - none -
fig|6666666.229911.rna.50 RNA AEJQ02000029.1 128199 128271 3 + 73 tRNA-Val-TAC - none -
fig|6666666.229911.rna.51 RNA AEJQ02000029.1 128302 128374 1 + 73 tRNA-Val-TAC - none -
fig|6666666.229911.rna.52 RNA AEJQ02000030.1 22234 22162 -1 - 73 tRNA-Gly-GCC tRNAs