fig|6666666.229912.peg.1 CDS AEJL02000001.1 849 163 -3 - 687 Leader peptidase (Prepilin peptidase) (EC 3.4.23.43) / N-methyltransferase (EC 2.1.1.-) Type IV pilus;
Type IV pilus
fig|6666666.229912.peg.2 CDS AEJL02000001.1 2072 849 -2 - 1224 Type II secretory pathway, component PulF / Type IV fimbrial assembly protein PilC Type IV pilus
fig|6666666.229912.peg.3 CDS AEJL02000001.1 3474 2065 -3 - 1410 Type IV fimbrial assembly, ATPase PilB Type IV pilus
fig|6666666.229912.peg.4 CDS AEJL02000001.1 4022 3501 -2 - 522 Type IV pilin PilA Type IV pilus
fig|6666666.229912.peg.5 CDS AEJL02000001.1 4075 4629 1 + 555 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD Recycling of Peptidoglycan Amino Acids
fig|6666666.229912.peg.6 CDS AEJL02000001.1 5573 5103 -2 - 471 Putative sugar isomerase involved in processing of exogenous sialic acid Sialic Acid Metabolism
fig|6666666.229912.peg.7 CDS AEJL02000001.1 5765 7996 2 + 2232 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) Bacterial RNA-metabolizing Zn-dependent hydrolases;
Polyadenylation bacterial
fig|6666666.229912.peg.8 CDS AEJL02000001.1 8081 8983 2 + 903 Lipoprotein nlpI precursor - none -
fig|6666666.229912.peg.9 CDS AEJL02000001.1 9110 10897 2 + 1788 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) - none -
fig|6666666.229912.peg.10 CDS AEJL02000001.1 11591 10980 -2 - 612 UDP-glucose dehydrogenase (EC 1.1.1.22) - none -
fig|6666666.229912.peg.11 CDS AEJL02000001.1 11648 11803 2 + 156 Mobile element protein - none -
fig|6666666.229912.peg.12 CDS AEJL02000001.1 11896 12999 1 + 1104 Sugar diacid utilization regulator SdaR D-galactarate, D-glucarate and D-glycerate catabolism;
D-galactarate, D-glucarate and D-glycerate catabolism - gjo
fig|6666666.229912.peg.13 CDS AEJL02000001.1 13131 14405 3 + 1275 D-glycerate transporter (predicted) D-galactarate, D-glucarate and D-glycerate catabolism;
D-galactarate, D-glucarate and D-glycerate catabolism - gjo;
Glycerate metabolism
fig|6666666.229912.peg.14 CDS AEJL02000001.1 14402 15541 2 + 1140 Glycerate kinase (EC 2.7.1.31) D-galactarate, D-glucarate and D-glycerate catabolism;
D-galactarate, D-glucarate and D-glycerate catabolism - gjo;
Glycerate metabolism;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Glycine and Serine Utilization;
Serine-glyoxylate cycle
fig|6666666.229912.peg.15 CDS AEJL02000001.1 16151 15612 -2 - 540 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) Cell division-ribosomal stress proteins cluster;
Folate biosynthesis cluster;
Purine conversions
fig|6666666.229912.peg.16 CDS AEJL02000001.1 17751 16390 -3 - 1362 TldE protein, part of TldE/TldD proteolytic complex Putative TldE-TldD proteolytic complex
fig|6666666.229912.peg.17 CDS AEJL02000001.1 17868 18401 3 + 534 FIG138315: Putative alpha helix protein Putative TldE-TldD proteolytic complex
fig|6666666.229912.peg.18 CDS AEJL02000001.1 19850 18459 -2 - 1392 Arsenic efflux pump protein Arsenic resistance
fig|6666666.229912.peg.19 CDS AEJL02000001.1 20019 19855 -3 - 165 hypothetical protein - none -
fig|6666666.229912.peg.20 CDS AEJL02000001.1 20540 20040 -2 - 501 Ribonuclease E inhibitor RraA RNA processing and degradation, bacterial
fig|6666666.229912.peg.21 CDS AEJL02000001.1 21535 20591 -1 - 945 1,4-dihydroxy-2-naphthoate polyprenyltransferase (EC 2.5.1.74) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229912.peg.22 CDS AEJL02000001.1 21665 22381 2 + 717 COG1720: Uncharacterized conserved protein tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229912.peg.23 CDS AEJL02000002.1 39 1499 3 + 1461 Isoleucyl-tRNA synthetase (EC 6.1.1.5) tRNA aminoacylation, Ile
fig|6666666.229912.peg.24 CDS AEJL02000002.1 1579 2073 1 + 495 Lipoprotein signal peptidase (EC 3.4.23.36) Lipoprotein Biosynthesis;
Signal peptidase
fig|6666666.229912.peg.25 CDS AEJL02000002.1 2073 3017 3 + 945 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.229912.peg.26 CDS AEJL02000002.1 3608 3453 -2 - 156 hypothetical protein - none -
fig|6666666.229912.peg.27 CDS AEJL02000002.1 3610 3939 1 + 330 DNA uptake protein and related DNA-binding proteins - none -
fig|6666666.229912.peg.28 CDS AEJL02000002.1 3965 4645 2 + 681 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) Heat shock dnaK gene cluster extended;
Housecleaning nucleoside triphosphate pyrophosphatases
fig|6666666.229912.peg.29 CDS AEJL02000002.1 4684 5007 1 + 324 PlcB, ORFX, ORFP, ORFB, ORFA, ldh gene - none -
fig|6666666.229912.peg.30 CDS AEJL02000002.1 5007 6176 3 + 1170 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB CBSS-630.2.peg.3360;
Heat shock dnaK gene cluster extended;
Heme and Siroheme Biosynthesis;
Queuosine-Archaeosine Biosynthesis
fig|6666666.229912.peg.31 CDS AEJL02000002.1 6275 6931 2 + 657 Ribose 5-phosphate isomerase A (EC 5.3.1.6) D-ribose utilization;
Pentose phosphate pathway
fig|6666666.229912.peg.32 CDS AEJL02000002.1 6951 8183 3 + 1233 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) Glycine and Serine Utilization;
Pyridoxin (Vitamin B6) Biosynthesis;
Serine Biosynthesis
fig|6666666.229912.peg.33 CDS AEJL02000002.1 8494 9540 1 + 1047 iron chelatin ABC transporter periplasmic-binding protein - none -
fig|6666666.229912.peg.34 CDS AEJL02000002.1 10268 9627 -2 - 642 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) D-Galacturonate and D-Glucuronate Utilization;
Entner-Doudoroff Pathway
fig|6666666.229912.peg.35 CDS AEJL02000002.1 11680 10277 -1 - 1404 Uronate isomerase (EC 5.3.1.12) D-Galacturonate and D-Glucuronate Utilization
fig|6666666.229912.peg.36 CDS AEJL02000002.1 12537 11692 -3 - 846 D-mannonate oxidoreductase (EC 1.1.1.57) D-Galacturonate and D-Glucuronate Utilization
fig|6666666.229912.peg.37 CDS AEJL02000002.1 13493 12549 -2 - 945 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) D-Galacturonate and D-Glucuronate Utilization;
D-gluconate and ketogluconates metabolism;
Entner-Doudoroff Pathway
fig|6666666.229912.peg.38 CDS AEJL02000002.1 14540 13548 -2 - 993 TRAP-type C4-dicarboxylate transport system, periplasmic component TRAP Transporter collection
fig|6666666.229912.peg.39 CDS AEJL02000002.1 15253 15936 1 + 684 TRAP-type C4-dicarboxylate transport system, large permease component TRAP Transporter collection
fig|6666666.229912.peg.40 CDS AEJL02000002.1 15948 16553 3 + 606 TRAP-type C4-dicarboxylate transport system, large permease component TRAP Transporter collection
fig|6666666.229912.peg.41 CDS AEJL02000002.1 16577 18952 2 + 2376 Alpha-glucosidase (EC 3.2.1.20) D-Galacturonate and D-Glucuronate Utilization;
Maltose and Maltodextrin Utilization
fig|6666666.229912.peg.42 CDS AEJL02000002.1 18967 19722 1 + 756 Hexuronate utilization operon transcriptional repressor ExuR D-Galacturonate and D-Glucuronate Utilization
fig|6666666.229912.peg.43 CDS AEJL02000002.1 19742 20926 2 + 1185 Mannonate dehydratase (EC 4.2.1.8) D-Galacturonate and D-Glucuronate Utilization
fig|6666666.229912.peg.44 CDS AEJL02000002.1 20952 21887 3 + 936 hypothetical protein - none -
fig|6666666.229912.peg.45 CDS AEJL02000002.1 21932 22834 2 + 903 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229912.peg.46 CDS AEJL02000002.1 24614 22860 -2 - 1755 Putative sulfate permease - none -
fig|6666666.229912.peg.47 CDS AEJL02000002.1 25051 27468 1 + 2418 ATP-dependent protease La (EC 3.4.21.53) Type I Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229912.peg.48 CDS AEJL02000002.1 27595 29442 1 + 1848 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase
fig|6666666.229912.peg.49 CDS AEJL02000002.1 29577 30203 3 + 627 Uracil phosphoribosyltransferase (EC 2.4.2.9) De Novo Pyrimidine Synthesis;
pyrimidine conversions
fig|6666666.229912.peg.50 CDS AEJL02000002.1 30327 31580 3 + 1254 Uracil permease De Novo Pyrimidine Synthesis
fig|6666666.229912.peg.51 CDS AEJL02000002.1 31714 31577 -1 - 138 hypothetical protein - none -
fig|6666666.229912.peg.52 CDS AEJL02000002.1 31700 32404 2 + 705 Chromosomal replication initiator protein DnaA Cell Division Subsystem including YidCD;
DNA replication cluster 1
fig|6666666.229912.peg.53 CDS AEJL02000002.1 32862 32410 -3 - 453 Putative protein-S-isoprenylcysteine methyltransferase - none -
fig|6666666.229912.peg.54 CDS AEJL02000002.1 33529 32915 -1 - 615 Mlr7403 protein CBSS-290633.1.peg.1906;
CBSS-498211.3.peg.1415
fig|6666666.229912.peg.55 CDS AEJL02000002.1 34817 33540 -2 - 1278 Histidyl-tRNA synthetase (EC 6.1.1.21) CBSS-498211.3.peg.1415;
tRNA aminoacylation, His
fig|6666666.229912.peg.56 CDS AEJL02000002.1 35942 34839 -2 - 1104 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (EC 1.17.7.1) CBSS-498211.3.peg.1415;
CBSS-83331.1.peg.3039;
Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.229912.peg.57 CDS AEJL02000002.1 37009 35954 -1 - 1056 FIG021952: putative membrane protein CBSS-498211.3.peg.1415
fig|6666666.229912.peg.58 CDS AEJL02000002.1 37703 37152 -2 - 552 Type IV pilus biogenesis protein PilF CBSS-498211.3.peg.1415
fig|6666666.229912.peg.59 CDS AEJL02000002.1 38864 37725 -2 - 1140 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) CBSS-498211.3.peg.1415;
Conserved gene cluster associated with Met-tRNA formyltransferase;
RNA methylation
fig|6666666.229912.peg.60 CDS AEJL02000002.1 38991 39104 3 + 114 hypothetical protein - none -
fig|6666666.229912.peg.61 CDS AEJL02000002.1 39159 40208 3 + 1050 L-asparaginase (EC 3.5.1.1) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229912.peg.62 CDS AEJL02000002.1 41674 40310 -1 - 1365 L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17) Glycine and Serine Utilization;
Glycine and Serine Utilization;
Pyruvate Alanine Serine Interconversions;
Pyruvate Alanine Serine Interconversions
fig|6666666.229912.peg.63 CDS AEJL02000002.1 43008 41767 -3 - 1242 Serine transporter Glycine and Serine Utilization;
Pyruvate Alanine Serine Interconversions
fig|6666666.229912.peg.64 CDS AEJL02000002.1 43665 43165 -3 - 501 Protein sprT - none -
fig|6666666.229912.peg.65 CDS AEJL02000003.1 48 506 3 + 459 Transport ATP-binding protein CydD Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229912.peg.66 CDS AEJL02000003.1 499 2157 1 + 1659 ABC transporter ATP-binding protein - none -
fig|6666666.229912.peg.67 CDS AEJL02000003.1 2888 2268 -2 - 621 Unsaturated fatty acid biosythesis repressor FabR, TetR family - none -
fig|6666666.229912.peg.68 CDS AEJL02000003.1 3799 2900 -1 - 900 Hydrogen peroxide-inducible genes activator LysR-family proteins in Escherichia coli;
LysR-family proteins in Salmonella enterica Typhimurium;
Oxidative stress;
Thioredoxin-disulfide reductase
fig|6666666.229912.peg.69 CDS AEJL02000003.1 3958 4686 1 + 729 Peroxiredoxin family protein/glutaredoxin - none -
fig|6666666.229912.peg.70 CDS AEJL02000003.1 4962 4747 -3 - 216 Protein SlyX - none -
fig|6666666.229912.peg.71 CDS AEJL02000003.1 5057 5782 2 + 726 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase;
Potassium homeostasis
fig|6666666.229912.peg.72 CDS AEJL02000003.1 5862 6530 3 + 669 YheO-like PAS domain - none -
fig|6666666.229912.peg.73 CDS AEJL02000003.1 6534 6911 3 + 378 tRNA 5-methylaminomethyl-2-thiouridine synthase TusD CBSS-326442.4.peg.1852;
Sulfite reduction-associated complex DsrMKJOP and co-clustering genes;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.229912.peg.74 CDS AEJL02000003.1 6908 7270 2 + 363 tRNA 5-methylaminomethyl-2-thiouridine synthase TusC CBSS-326442.4.peg.1852;
Sulfite reduction-associated complex DsrMKJOP and co-clustering genes;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.229912.peg.75 CDS AEJL02000003.1 7270 7560 1 + 291 tRNA 5-methylaminomethyl-2-thiouridine synthase TusB Sulfite reduction-associated complex DsrMKJOP and co-clustering genes;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.229912.peg.76 CDS AEJL02000003.1 8332 7565 -1 - 768 ABC-type polar amino acid transport system, ATPase component CBSS-326442.4.peg.1852
fig|6666666.229912.peg.77 CDS AEJL02000003.1 9064 8342 -1 - 723 L-Cystine ABC transporter, permease protein TcyB - none -
fig|6666666.229912.peg.78 CDS AEJL02000003.1 9827 9048 -2 - 780 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain - none -
fig|6666666.229912.peg.79 CDS AEJL02000003.1 11248 9953 -1 - 1296 Glycine/D-amino acid oxidases (deaminating) - none -
fig|6666666.229912.peg.80 CDS AEJL02000003.1 11339 11217 -2 - 123 hypothetical protein - none -
fig|6666666.229912.peg.81 CDS AEJL02000003.1 12738 11374 -3 - 1365 lipoprotein, putative - none -
fig|6666666.229912.peg.82 CDS AEJL02000003.1 12907 12785 -1 - 123 hypothetical protein - none -
fig|6666666.229912.peg.83 CDS AEJL02000003.1 13101 13319 3 + 219 hypothetical protein - none -
fig|6666666.229912.peg.84 CDS AEJL02000003.1 14490 13528 -3 - 963 Lipoate synthase Lipoic acid metabolism;
Lipoic acid synthesis cluster
fig|6666666.229912.peg.85 CDS AEJL02000003.1 15193 14555 -1 - 639 Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase Lipoic acid metabolism;
Lipoic acid synthesis cluster
fig|6666666.229912.peg.86 CDS AEJL02000003.1 15538 15239 -1 - 300 Proposed lipoate regulatory protein YbeD Lipoic acid metabolism;
Lipoic acid synthesis cluster
fig|6666666.229912.peg.87 CDS AEJL02000003.1 16801 15611 -1 - 1191 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) Metallocarboxypeptidases (EC 3.4.17.-);
Murein Hydrolases;
Peptidoglycan Biosynthesis
fig|6666666.229912.peg.88 CDS AEJL02000003.1 17689 16832 -1 - 858 Rare lipoprotein A precursor Peptidoglycan Biosynthesis
fig|6666666.229912.peg.89 CDS AEJL02000003.1 18859 17738 -1 - 1122 Rod shape-determining protein RodA Bacterial Cytoskeleton;
Peptidoglycan Biosynthesis
fig|6666666.229912.peg.90 CDS AEJL02000003.1 20807 18846 -2 - 1962 Penicillin-binding protein 2 (PBP-2) 16S rRNA modification within P site of ribosome;
CBSS-83331.1.peg.3039;
Peptidoglycan Biosynthesis
fig|6666666.229912.peg.91 CDS AEJL02000003.1 21356 20820 -2 - 537 LSU m3Psi1915 methyltransferase RlmH RNA methylation;
Ribosome biogenesis bacterial;
tRNA modification Bacteria
fig|6666666.229912.peg.92 CDS AEJL02000003.1 21655 21347 -1 - 309 Iojap protein - none -
fig|6666666.229912.peg.93 CDS AEJL02000003.1 22978 21722 -1 - 1257 ATP-dependent RNA helicase RhlB - none -
fig|6666666.229912.peg.94 CDS AEJL02000003.1 23303 24541 2 + 1239 Transcription termination factor Rho Transcription factors bacterial
fig|6666666.229912.peg.95 CDS AEJL02000003.1 25901 24666 -2 - 1236 Major facilitator superfamily (MFS) transport protein - none -
fig|6666666.229912.peg.96 CDS AEJL02000003.1 25981 26121 1 + 141 hypothetical protein - none -
fig|6666666.229912.peg.97 CDS AEJL02000003.1 26360 26130 -2 - 231 Acyl carrier protein Fatty Acid Biosynthesis FASII;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229912.peg.98 CDS AEJL02000003.1 27361 26633 -1 - 729 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) Fatty Acid Biosynthesis FASII
fig|6666666.229912.peg.99 CDS AEJL02000003.1 28324 27386 -1 - 939 Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39) Fatty Acid Biosynthesis FASII
fig|6666666.229912.peg.100 CDS AEJL02000003.1 29381 28431 -2 - 951 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) Fatty Acid Biosynthesis FASII
fig|6666666.229912.peg.101 CDS AEJL02000003.1 30447 29428 -3 - 1020 Phosphate:acyl-ACP acyltransferase PlsX Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229912.peg.102 CDS AEJL02000003.1 30644 30474 -2 - 171 LSU ribosomal protein L32p Ribosome LSU bacterial
fig|6666666.229912.peg.103 CDS AEJL02000003.1 31185 30661 -3 - 525 COG1399 protein, clustered with ribosomal protein L32p - none -
fig|6666666.229912.peg.104 CDS AEJL02000003.1 31898 31257 -2 - 642 Dethiobiotin synthetase (EC 6.3.3.3) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229912.peg.105 CDS AEJL02000003.1 32638 31898 -1 - 741 Biotin synthesis protein BioC Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229912.peg.106 CDS AEJL02000003.1 33306 32656 -3 - 651 Biotin synthesis protein BioG Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229912.peg.107 CDS AEJL02000003.1 34462 33287 -1 - 1176 8-amino-7-oxononanoate synthase (EC 2.3.1.47) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229912.peg.108 CDS AEJL02000003.1 35744 34455 -2 - 1290 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229912.peg.109 CDS AEJL02000003.1 35967 36836 3 + 870 Phosphatidylserine decarboxylase (EC 4.1.1.65) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229912.peg.110 CDS AEJL02000003.1 36862 37494 1 + 633 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase
fig|6666666.229912.peg.111 CDS AEJL02000003.1 38218 37559 -1 - 660 Glutamate 5-kinase (EC 2.7.2.11) Proline Synthesis
fig|6666666.229912.peg.112 CDS AEJL02000003.1 38378 38199 -2 - 180 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA Proline Synthesis;
Proline Synthesis
fig|6666666.229912.peg.113 CDS AEJL02000003.1 38529 39314 3 + 786 FIG023911: putative membrane protein CBSS-316275.9.peg.382
fig|6666666.229912.peg.114 CDS AEJL02000003.1 39316 39780 1 + 465 FIG001826: putative inner membrane protein CBSS-316275.9.peg.382
fig|6666666.229912.peg.115 CDS AEJL02000003.1 39820 40305 1 + 486 Dihydrofolate reductase (EC 1.5.1.3) 5-FCL-like protein;
Folate Biosynthesis
fig|6666666.229912.peg.116 CDS AEJL02000003.1 40787 40656 -2 - 132 hypothetical protein - none -
fig|6666666.229912.peg.117 CDS AEJL02000003.1 41794 41099 -1 - 696 FOG: TPR repeat, SEL1 subfamily - none -
fig|6666666.229912.peg.118 CDS AEJL02000005.1 2041 236 -1 - 1806 VgrG-3 protein - none -
fig|6666666.229912.peg.119 CDS AEJL02000005.1 2045 2206 2 + 162 hypothetical protein - none -
fig|6666666.229912.peg.120 CDS AEJL02000005.1 2629 2471 -1 - 159 hypothetical protein - none -
fig|6666666.229912.peg.121 CDS AEJL02000006.1 45 1220 3 + 1176 hypothetical protein - none -
fig|6666666.229912.peg.122 CDS AEJL02000006.1 1559 1368 -2 - 192 Mobile element protein - none -
fig|6666666.229912.peg.123 CDS AEJL02000006.1 1549 1674 1 + 126 hypothetical protein - none -
fig|6666666.229912.peg.124 CDS AEJL02000006.1 1886 2092 2 + 207 Tfp pilus assembly protein, pilus retraction ATPase PilT - none -
fig|6666666.229912.peg.125 CDS AEJL02000006.1 2535 3704 3 + 1170 Cystathionine gamma-synthase (EC 2.5.1.48) Methionine Biosynthesis
fig|6666666.229912.peg.126 CDS AEJL02000006.1 3728 4723 2 + 996 D-lactate dehydrogenase (EC 1.1.1.28) Fermentations: Lactate;
Fermentations: Mixed acid
fig|6666666.229912.peg.127 CDS AEJL02000006.1 4823 5146 2 + 324 Thioredoxin - none -
fig|6666666.229912.peg.128 CDS AEJL02000006.1 6304 5345 -1 - 960 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) RNA pseudouridine syntheses;
Ribosome biogenesis bacterial
fig|6666666.229912.peg.129 CDS AEJL02000006.1 6536 6414 -2 - 123 hypothetical protein - none -
fig|6666666.229912.peg.130 CDS AEJL02000006.1 6771 9662 3 + 2892 Ribonuclease E (EC 3.1.26.12) RNA processing and degradation, bacterial;
Ribosome biogenesis bacterial
fig|6666666.229912.peg.131 CDS AEJL02000006.1 10490 10101 -2 - 390 INTEGRAL MEMBRANE PROTEIN (Rhomboid family) - none -
fig|6666666.229912.peg.132 CDS AEJL02000006.1 12339 10570 -3 - 1770 Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8) Biogenesis of c-type cytochromes;
Periplasmic disulfide interchange
fig|6666666.229912.peg.133 CDS AEJL02000006.1 12503 13072 2 + 570 Lysine decarboxylase family - none -
fig|6666666.229912.peg.134 CDS AEJL02000006.1 13283 13489 2 + 207 LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-independent Ribosome LSU bacterial;
Ribosome LSU bacterial
fig|6666666.229912.peg.135 CDS AEJL02000006.1 13559 13699 2 + 141 LSU ribosomal protein L36p Ribosome LSU bacterial
fig|6666666.229912.peg.136 CDS AEJL02000006.1 13961 14668 2 + 708 Aerobic respiration control protein arcA - none -
fig|6666666.229912.peg.137 CDS AEJL02000006.1 15774 14776 -3 - 999 Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229912.peg.138 CDS AEJL02000006.1 16754 15771 -2 - 984 Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229912.peg.139 CDS AEJL02000006.1 17702 16764 -2 - 939 Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229912.peg.140 CDS AEJL02000006.1 17858 17712 -2 - 147 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229912.peg.141 CDS AEJL02000006.1 17994 17827 -3 - 168 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229912.peg.142 CDS AEJL02000006.1 18632 17970 -2 - 663 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229912.peg.143 CDS AEJL02000006.1 20358 18775 -3 - 1584 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229912.peg.144 CDS AEJL02000006.1 20381 20518 2 + 138 hypothetical protein - none -
fig|6666666.229912.peg.145 CDS AEJL02000006.1 20727 21209 3 + 483 tmRNA-binding protein SmpB Heat shock dnaK gene cluster extended;
Translation termination factors bacterial
fig|6666666.229912.peg.146 CDS AEJL02000006.1 21161 21280 2 + 120 tmRNA-binding protein SmpB Heat shock dnaK gene cluster extended;
Translation termination factors bacterial
fig|6666666.229912.peg.147 CDS AEJL02000006.1 22452 21277 -3 - 1176 GTP-binding protein Obg CBSS-176279.3.peg.868;
Universal GTPases
fig|6666666.229912.peg.148 CDS AEJL02000006.1 23358 22489 -3 - 870 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229912.peg.149 CDS AEJL02000007.1 1304 2302 2 + 999 Xylose ABC transporter, periplasmic xylose-binding protein XylF Xylose utilization
fig|6666666.229912.peg.150 CDS AEJL02000007.1 2377 3873 1 + 1497 D-xylose transport ATP-binding protein XylG Xylose utilization
fig|6666666.229912.peg.151 CDS AEJL02000007.1 3877 4074 1 + 198 Xylose ABC transporter, permease protein XylH Xylose utilization
fig|6666666.229912.peg.152 CDS AEJL02000007.1 4043 5005 2 + 963 Xylose ABC transporter, permease protein XylH Xylose utilization
fig|6666666.229912.peg.153 CDS AEJL02000007.1 5094 5285 3 + 192 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229912.peg.154 CDS AEJL02000007.1 5452 6282 1 + 831 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229912.peg.155 CDS AEJL02000007.1 6335 7681 2 + 1347 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229912.peg.156 CDS AEJL02000007.1 7807 7685 -1 - 123 hypothetical protein - none -
fig|6666666.229912.peg.157 CDS AEJL02000007.1 7796 8968 2 + 1173 Xylose activator XylR (AraC family) Xylose utilization
fig|6666666.229912.peg.158 CDS AEJL02000007.1 9771 8995 -3 - 777 Permeases of the major facilitator superfamily - none -
fig|6666666.229912.peg.159 CDS AEJL02000007.1 10451 9759 -2 - 693 Permeases of the major facilitator superfamily - none -
fig|6666666.229912.peg.160 CDS AEJL02000007.1 10736 11734 2 + 999 PTS system, mannose-specific IIA component (EC 2.7.1.69) / PTS system, mannose-specific IIB component (EC 2.7.1.69) Mannose Metabolism;
Mannose Metabolism;
Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229912.peg.161 CDS AEJL02000007.1 11746 12549 1 + 804 PTS system, mannose-specific IIC component (EC 2.7.1.69) Mannose Metabolism;
Sialic Acid Metabolism
fig|6666666.229912.peg.162 CDS AEJL02000007.1 12565 13401 1 + 837 PTS system, mannose-specific IID component (EC 2.7.1.69) Mannose Metabolism;
Sialic Acid Metabolism
fig|6666666.229912.peg.163 CDS AEJL02000007.1 15107 14070 -2 - 1038 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) LOS core oligosaccharide biosynthesis
fig|6666666.229912.peg.164 CDS AEJL02000007.1 16706 15288 -2 - 1419 Aspartate ammonia-lyase (EC 4.3.1.1) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229912.peg.165 CDS AEJL02000007.1 16936 17418 1 + 483 FxsA protein - none -
fig|6666666.229912.peg.166 CDS AEJL02000007.1 17505 17795 3 + 291 Heat shock protein 60 family co-chaperone GroES GroEL GroES
fig|6666666.229912.peg.167 CDS AEJL02000007.1 17915 19549 2 + 1635 Heat shock protein 60 family chaperone GroEL GroEL GroES
fig|6666666.229912.peg.168 CDS AEJL02000007.1 20495 19638 -2 - 858 Methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5) / Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9) 5-FCL-like protein;
One-carbon metabolism by tetrahydropterines;
One-carbon metabolism by tetrahydropterines;
Serine-glyoxylate cycle;
Serine-glyoxylate cycle
fig|6666666.229912.peg.169 CDS AEJL02000007.1 21186 21064 -3 - 123 hypothetical protein - none -
fig|6666666.229912.peg.170 CDS AEJL02000007.1 23440 23634 1 + 195 hypothetical protein - none -
fig|6666666.229912.peg.171 CDS AEJL02000007.1 23833 23714 -1 - 120 hypothetical protein - none -
fig|6666666.229912.peg.172 CDS AEJL02000007.1 24459 23908 -3 - 552 hypothetical protein - none -
fig|6666666.229912.peg.173 CDS AEJL02000007.1 24885 24763 -3 - 123 hypothetical protein - none -
fig|6666666.229912.peg.174 CDS AEJL02000007.1 25861 25031 -1 - 831 hypothetical protein - none -
fig|6666666.229912.peg.175 CDS AEJL02000007.1 28705 25901 -1 - 2805 hypothetical protein - none -
fig|6666666.229912.peg.176 CDS AEJL02000008.1 55 1524 1 + 1470 Glycogen debranching enzyme (EC 3.2.1.-) Glycogen metabolism;
Glycogen metabolism cluster
fig|6666666.229912.peg.177 CDS AEJL02000008.1 1551 2861 3 + 1311 Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27) Glycogen metabolism;
Glycogen metabolism cluster
fig|6666666.229912.peg.178 CDS AEJL02000008.1 3063 4502 3 + 1440 Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21) Glycogen metabolism;
Glycogen metabolism cluster
fig|6666666.229912.peg.179 CDS AEJL02000008.1 4626 7091 3 + 2466 Glycogen phosphorylase (EC 2.4.1.1) Glycogen metabolism;
Glycogen metabolism cluster;
Maltose and Maltodextrin Utilization
fig|6666666.229912.peg.180 CDS AEJL02000008.1 7256 7116 -2 - 141 hypothetical protein - none -
fig|6666666.229912.peg.181 CDS AEJL02000008.1 7815 7210 -3 - 606 DedA protein DedA family of inner membrane proteins;
Uptake of selenate and selenite
fig|6666666.229912.peg.182 CDS AEJL02000008.1 8029 8316 1 + 288 LSU ribosomal protein L25p Ribosome LSU bacterial;
Transcription repair cluster
fig|6666666.229912.peg.183 CDS AEJL02000008.1 8465 9067 2 + 603 lipoprotein HlpB - none -
fig|6666666.229912.peg.184 CDS AEJL02000008.1 9242 10120 2 + 879 Murein-DD-endopeptidase (EC 3.4.99.-) Peptidoglycan Biosynthesis
fig|6666666.229912.peg.185 CDS AEJL02000008.1 10300 11628 1 + 1329 Chromosome partition protein MukF DNA structural proteins, bacterial;
MukBEF Chromosome Condensation
fig|6666666.229912.peg.186 CDS AEJL02000008.1 11800 13362 1 + 1563 Putative 2-acylglycerophosphoethanolamine acyltransferase / acyl-acyl carrier protein synthetase (EC 6.2.1.20) - none -
fig|6666666.229912.peg.187 CDS AEJL02000008.1 13359 15023 3 + 1665 Putative 2-acylglycerophosphoethanolamine acyltransferase / acyl-acyl carrier protein synthetase (EC 6.2.1.20) - none -
fig|6666666.229912.peg.188 CDS AEJL02000008.1 15044 15784 2 + 741 Chromosome partition protein MukE DNA structural proteins, bacterial;
MukBEF Chromosome Condensation
fig|6666666.229912.peg.189 CDS AEJL02000008.1 15784 20274 1 + 4491 Chromosome partition protein MukB DNA structural proteins, bacterial;
MukBEF Chromosome Condensation
fig|6666666.229912.peg.190 CDS AEJL02000008.1 20351 21223 2 + 873 Integral membrane protein - none -
fig|6666666.229912.peg.191 CDS AEJL02000008.1 21235 22662 1 + 1428 Exodeoxyribonuclease I (EC 3.1.11.1) DNA Repair Base Excision
fig|6666666.229912.peg.192 CDS AEJL02000008.1 23553 24038 3 + 486 Ferritin-like protein 2 - none -
fig|6666666.229912.peg.193 CDS AEJL02000008.1 24054 24551 3 + 498 Ferritin-like protein 2 - none -
fig|6666666.229912.peg.194 CDS AEJL02000008.1 24783 24613 -3 - 171 hypothetical protein - none -
fig|6666666.229912.peg.195 CDS AEJL02000008.1 24892 25665 1 + 774 Fumarate and nitrate reduction regulatory protein Oxidative stress
fig|6666666.229912.peg.196 CDS AEJL02000008.1 25783 26715 1 + 933 Universal stress protein E Universal stress protein family
fig|6666666.229912.peg.197 CDS AEJL02000008.1 26842 27678 1 + 837 ABC-type Co2+ transport system, periplasmic component - none -
fig|6666666.229912.peg.198 CDS AEJL02000008.1 30367 27761 -1 - 2607 DNA topoisomerase I (EC 5.99.1.2) CBSS-272943.3.peg.1367;
Conserved gene cluster associated with Met-tRNA formyltransferase;
DNA topoisomerases, Type I, ATP-independent
fig|6666666.229912.peg.199 CDS AEJL02000008.1 31441 30605 -1 - 837 COG0613, Predicted metal-dependent phosphoesterases (PHP family) YrdC-YciO-Sua5 protein family;
tRNA modification Bacteria
fig|6666666.229912.peg.200 CDS AEJL02000008.1 32474 31455 -2 - 1020 Dihydroorotate dehydrogenase (EC 1.3.3.1) De Novo Pyrimidine Synthesis
fig|6666666.229912.peg.201 CDS AEJL02000008.1 35156 32547 -2 - 2610 Membrane alanine aminopeptidase N (EC 3.4.11.2) Aminopeptidases (EC 3.4.11.-)
fig|6666666.229912.peg.202 CDS AEJL02000008.1 35578 36768 1 + 1191 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229912.peg.203 CDS AEJL02000008.1 37382 36819 -2 - 564 Transcriptional regulator, TetR family - none -
fig|6666666.229912.peg.204 CDS AEJL02000008.1 37530 38510 3 + 981 HlyD family secretion protein - none -
fig|6666666.229912.peg.205 CDS AEJL02000009.1 152 433 2 + 282 hypothetical protein - none -
fig|6666666.229912.peg.206 CDS AEJL02000009.1 439 759 1 + 321 Mobile element protein - none -
fig|6666666.229912.peg.207 CDS AEJL02000009.1 763 1017 1 + 255 Mobile element protein - none -
fig|6666666.229912.peg.208 CDS AEJL02000009.1 1077 1781 3 + 705 hypothetical protein - none -
fig|6666666.229912.peg.209 CDS AEJL02000009.1 2219 2629 2 + 411 Preprotein translocase subunit SecE (TC 3.A.5.1.1) LSU ribosomal proteins cluster
fig|6666666.229912.peg.210 CDS AEJL02000009.1 2631 3182 3 + 552 Transcription antitermination protein NusG LSU ribosomal proteins cluster;
Transcription factors bacterial
fig|6666666.229912.peg.211 CDS AEJL02000009.1 3338 3766 2 + 429 LSU ribosomal protein L11p (L12e) LSU ribosomal proteins cluster;
Ribosome LSU bacterial
fig|6666666.229912.peg.212 CDS AEJL02000009.1 3771 4460 3 + 690 LSU ribosomal protein L1p (L10Ae) LSU ribosomal proteins cluster;
Ribosome LSU bacterial
fig|6666666.229912.peg.213 CDS AEJL02000009.1 4475 4645 2 + 171 hypothetical protein - none -
fig|6666666.229912.peg.214 CDS AEJL02000009.1 4816 5307 1 + 492 LSU ribosomal protein L10p (P0) LSU ribosomal proteins cluster;
Ribosome LSU bacterial
fig|6666666.229912.peg.215 CDS AEJL02000009.1 5359 5730 1 + 372 LSU ribosomal protein L7/L12 (P1/P2) LSU ribosomal proteins cluster;
Ribosome LSU bacterial
fig|6666666.229912.peg.216 CDS AEJL02000009.1 6001 10029 1 + 4029 DNA-directed RNA polymerase beta subunit (EC 2.7.7.6) Mycobacterium virulence operon involved in DNA transcription;
RNA polymerase bacterial
fig|6666666.229912.peg.217 CDS AEJL02000009.1 10132 14400 1 + 4269 DNA-directed RNA polymerase beta@1 subunit (EC 2.7.7.6) Mycobacterium virulence operon involved in DNA transcription;
RNA polymerase bacterial
fig|6666666.229912.peg.218 CDS AEJL02000009.1 14870 14649 -2 - 222 probable transcription regulator - none -
fig|6666666.229912.peg.219 CDS AEJL02000009.1 15565 15317 -1 - 249 Mobile element protein - none -
fig|6666666.229912.peg.220 CDS AEJL02000009.1 15919 15728 -1 - 192 Mobile element protein - none -
fig|6666666.229912.peg.221 CDS AEJL02000009.1 16355 16134 -2 - 222 Cu(I)-responsive transcriptional regulator Copper homeostasis
fig|6666666.229912.peg.222 CDS AEJL02000009.1 16614 16826 3 + 213 Copper chaperone Copper homeostasis
fig|6666666.229912.peg.223 CDS AEJL02000009.1 16913 19072 2 + 2160 Copper-translocating P-type ATPase (EC 3.6.3.4) Copper Transport System;
Copper homeostasis
fig|6666666.229912.peg.224 CDS AEJL02000009.1 19145 19990 2 + 846 membrane protein, putative - none -
fig|6666666.229912.peg.225 CDS AEJL02000009.1 20142 20456 3 + 315 Phage-related protein - none -
fig|6666666.229912.peg.226 CDS AEJL02000009.1 20449 20772 1 + 324 FIG074102: hypothetical protein - none -
fig|6666666.229912.peg.227 CDS AEJL02000009.1 22067 20835 -2 - 1233 ATP-dependent Clp protease ATP-binding subunit ClpX Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229912.peg.228 CDS AEJL02000009.1 22643 22077 -2 - 567 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent;
cAMP signaling in bacteria
fig|6666666.229912.peg.229 CDS AEJL02000009.1 22792 22938 1 + 147 hypothetical protein - none -
fig|6666666.229912.peg.230 CDS AEJL02000009.1 24503 22902 -2 - 1602 Dca - none -
fig|6666666.229912.peg.231 CDS AEJL02000009.1 24735 27008 3 + 2274 Glutathione biosynthesis bifunctional protein gshF (EC 6.3.2.2)(EC 6.3.2.3) Glutathione: Biosynthesis and gamma-glutamyl cycle
fig|6666666.229912.peg.232 CDS AEJL02000009.1 27141 27013 -3 - 129 hypothetical protein - none -
fig|6666666.229912.peg.233 CDS AEJL02000010.1 317 1585 2 + 1269 Mn2+ and Fe2+ transporters of the NRAMP family - none -
fig|6666666.229912.peg.234 CDS AEJL02000010.1 1766 2137 2 + 372 Dihydroneopterin triphosphate pyrophosphohydrolase type 2 (nudB) Folate Biosynthesis
fig|6666666.229912.peg.235 CDS AEJL02000010.1 2171 2911 2 + 741 FIG000859: hypothetical protein YebC Riboflavin, FMN and FAD metabolism in plants;
RuvABC plus a hypothetical
fig|6666666.229912.peg.236 CDS AEJL02000010.1 2923 3333 1 + 411 excinuclease ABC subunit A - none -
fig|6666666.229912.peg.237 CDS AEJL02000010.1 3389 3961 2 + 573 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) RuvABC plus a hypothetical
fig|6666666.229912.peg.238 CDS AEJL02000010.1 4025 4639 2 + 615 Holliday junction DNA helicase RuvA RuvABC plus a hypothetical
fig|6666666.229912.peg.239 CDS AEJL02000010.1 4648 5667 1 + 1020 Holliday junction DNA helicase RuvB RuvABC plus a hypothetical
fig|6666666.229912.peg.240 CDS AEJL02000010.1 6032 5721 -2 - 312 Chromosome segregation ATPases - none -
fig|6666666.229912.peg.241 CDS AEJL02000010.1 6589 8049 1 + 1461 Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229912.peg.242 CDS AEJL02000010.1 8064 9200 3 + 1137 Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229912.peg.243 CDS AEJL02000010.1 9718 10122 1 + 405 4-hydroxybenzoyl-CoA thioesterase family active site Ton and Tol transport systems
fig|6666666.229912.peg.244 CDS AEJL02000010.1 10152 10841 3 + 690 MotA/TolQ/ExbB proton channel family protein Ton and Tol transport systems
fig|6666666.229912.peg.245 CDS AEJL02000010.1 10927 11349 1 + 423 Tol biopolymer transport system, TolR protein Ton and Tol transport systems
fig|6666666.229912.peg.246 CDS AEJL02000010.1 11366 12514 2 + 1149 TolA protein Ton and Tol transport systems
fig|6666666.229912.peg.247 CDS AEJL02000010.1 12549 13829 3 + 1281 tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins Ton and Tol transport systems
fig|6666666.229912.peg.248 CDS AEJL02000010.1 13844 14311 2 + 468 18K peptidoglycan-associated outer membrane lipoprotein; Peptidoglycan-associated lipoprotein precursor; Outer membrane protein P6; OmpA/MotB precursor Ton and Tol transport systems
fig|6666666.229912.peg.249 CDS AEJL02000010.1 14920 15537 1 + 618 Type II secretory pathway, pseudopilin PulG - none -
fig|6666666.229912.peg.250 CDS AEJL02000010.1 15551 16267 2 + 717 Type II secretory pathway, component PulJ - none -
fig|6666666.229912.peg.251 CDS AEJL02000010.1 16264 16959 1 + 696 FIG00696574: hypothetical protein - none -
fig|6666666.229912.peg.252 CDS AEJL02000010.1 16934 17236 2 + 303 FIG00696353: hypothetical protein - none -
fig|6666666.229912.peg.253 CDS AEJL02000010.1 17282 20671 2 + 3390 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) DNA repair, bacterial RecBCD pathway
fig|6666666.229912.peg.254 CDS AEJL02000010.1 21116 20673 -2 - 444 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Ribosome biogenesis bacterial;
YrdC-YciO-Sua5 protein family
fig|6666666.229912.peg.255 CDS AEJL02000010.1 21575 21126 -2 - 450 DNA polymerase III psi subunit (EC 2.7.7.7) - none -
fig|6666666.229912.peg.256 CDS AEJL02000010.1 21631 22635 1 + 1005 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) RNA methylation
fig|6666666.229912.peg.257 CDS AEJL02000010.1 22722 22871 3 + 150 hypothetical protein - none -
fig|6666666.229912.peg.258 CDS AEJL02000010.1 22874 23014 2 + 141 hypothetical protein - none -
fig|6666666.229912.peg.259 CDS AEJL02000010.1 23251 23793 1 + 543 hypothetical protein - none -
fig|6666666.229912.peg.260 CDS AEJL02000010.1 23928 25190 3 + 1263 Serine hydroxymethyltransferase (EC 2.1.2.1) 5-FCL-like protein;
Glycine Biosynthesis;
Glycine and Serine Utilization;
Serine-glyoxylate cycle;
Serine Biosynthesis;
YrdC-YciO-Sua5 protein family
fig|6666666.229912.peg.261 CDS AEJL02000010.1 26297 26803 2 + 507 RTX toxin activating lysine-acyltransferase (EC 2.3.1.-) - none -
fig|6666666.229912.peg.262 CDS AEJL02000010.1 26816 29983 2 + 3168 bifunctional hemolysin-adenylate cyclase precursor cAMP signaling in bacteria
fig|6666666.229912.peg.263 CDS AEJL02000010.1 30052 32175 1 + 2124 Methionine ABC transporter ATP-binding protein Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229912.peg.264 CDS AEJL02000010.1 32190 33623 3 + 1434 Microcin H47 secretion protein - none -
fig|6666666.229912.peg.265 CDS AEJL02000010.1 34034 35914 2 + 1881 PTS system, mannitol-specific IIC component (EC 2.7.1.69) / PTS system, mannitol-specific IIB component (EC 2.7.1.69) / PTS system, mannitol-specific IIA component (EC 2.7.1.69) Mannitol Utilization;
Mannitol Utilization;
Mannitol Utilization
fig|6666666.229912.peg.266 CDS AEJL02000010.1 35992 37140 1 + 1149 Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17) Mannitol Utilization
fig|6666666.229912.peg.267 CDS AEJL02000010.1 37218 37730 3 + 513 Mannitol operon repressor Mannitol Utilization
fig|6666666.229912.peg.268 CDS AEJL02000010.1 38844 37834 -3 - 1011 Myo-inositol 2-dehydrogenase 1 (EC 1.1.1.18) Inositol catabolism
fig|6666666.229912.peg.269 CDS AEJL02000010.1 39743 38847 -2 - 897 Inosose dehydratase (EC 4.2.1.44) Inositol catabolism
fig|6666666.229912.peg.270 CDS AEJL02000010.1 41744 39798 -2 - 1947 Epi-inositol hydrolase (EC 3.7.1.-) Inositol catabolism
fig|6666666.229912.peg.271 CDS AEJL02000010.1 42055 43965 1 + 1911 5-keto-2-deoxygluconokinase (EC 2.7.1.92) / uncharacterized domain Inositol catabolism;
Inositol catabolism
fig|6666666.229912.peg.272 CDS AEJL02000010.1 44841 44002 -3 - 840 Predicted transcriptional regulator of the myo-inositol catabolic operon Inositol catabolism
fig|6666666.229912.peg.273 CDS AEJL02000010.1 45222 45410 3 + 189 VgrG-3 protein - none -
fig|6666666.229912.peg.274 CDS AEJL02000011.1 306 446 3 + 141 Mobile element protein - none -
fig|6666666.229912.peg.275 CDS AEJL02000011.1 483 731 3 + 249 Mobile element protein - none -
fig|6666666.229912.peg.276 CDS AEJL02000011.1 1324 1701 1 + 378 Mobile element protein - none -
fig|6666666.229912.peg.277 CDS AEJL02000011.1 2087 2710 2 + 624 Dephospho-CoA kinase (EC 2.7.1.24) Coenzyme A Biosynthesis
fig|6666666.229912.peg.278 CDS AEJL02000011.1 2700 2912 3 + 213 FIG003276: zinc-binding protein - none -
fig|6666666.229912.peg.279 CDS AEJL02000011.1 2912 3184 2 + 273 FIG00904058: hypothetical protein - none -
fig|6666666.229912.peg.280 CDS AEJL02000011.1 3398 3526 2 + 129 hypothetical protein - none -
fig|6666666.229912.peg.281 CDS AEJL02000011.1 3581 4954 2 + 1374 Sodium/glycine symporter GlyP - none -
fig|6666666.229912.peg.282 CDS AEJL02000011.1 5183 5506 2 + 324 Ribosome hibernation protein YfiA Ribosome activity modulation
fig|6666666.229912.peg.283 CDS AEJL02000011.1 5961 6209 3 + 249 unknown - none -
fig|6666666.229912.peg.284 CDS AEJL02000011.1 7123 6824 -1 - 300 DNA-binding protein Fis DNA structural proteins, bacterial
fig|6666666.229912.peg.285 CDS AEJL02000011.1 8166 7117 -3 - 1050 tRNA dihydrouridine synthase B (EC 1.-.-.-) tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229912.peg.286 CDS AEJL02000011.1 9295 8411 -1 - 885 Ribosomal protein L11 methyltransferase (EC 2.1.1.-) Heat shock dnaK gene cluster extended;
Ribosome biogenesis bacterial
fig|6666666.229912.peg.287 CDS AEJL02000011.1 9859 9308 -1 - 552 Protein involved in cell division - none -
fig|6666666.229912.peg.288 CDS AEJL02000011.1 11305 9869 -1 - 1437 Pantothenate:Na+ symporter (TC 2.A.21.1.1) CBSS-221988.1.peg.1679;
Coenzyme A Biosynthesis
fig|6666666.229912.peg.289 CDS AEJL02000011.1 11589 11302 -3 - 288 FIG003021: Membrane protein CBSS-221988.1.peg.1679
fig|6666666.229912.peg.290 CDS AEJL02000011.1 12986 11598 -2 - 1389 FOG: TPR repeat - none -
fig|6666666.229912.peg.291 CDS AEJL02000011.1 13866 13105 -3 - 762 Periplasmic protein TonB, links inner and outer membranes - none -
fig|6666666.229912.peg.292 CDS AEJL02000011.1 14055 13921 -3 - 135 hypothetical protein - none -
fig|6666666.229912.peg.293 CDS AEJL02000011.1 15510 14164 -3 - 1347 Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14) CBSS-221988.1.peg.1679;
Fatty Acid Biosynthesis FASII
fig|6666666.229912.peg.294 CDS AEJL02000011.1 16021 15554 -1 - 468 Biotin carboxyl carrier protein of acetyl-CoA carboxylase CBSS-221988.1.peg.1679;
Fatty Acid Biosynthesis FASII
fig|6666666.229912.peg.295 CDS AEJL02000011.1 16038 16190 3 + 153 hypothetical protein - none -
fig|6666666.229912.peg.296 CDS AEJL02000011.1 16621 16145 -1 - 477 3-dehydroquinate dehydratase II (EC 4.2.1.10) CBSS-221988.1.peg.1679;
Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate);
Quinate degradation
fig|6666666.229912.peg.297 CDS AEJL02000011.1 17721 16720 -3 - 1002 O-succinylbenzoate synthase (EC 4.2.1.113) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo;
Muconate lactonizing enzyme family
fig|6666666.229912.peg.298 CDS AEJL02000011.1 18031 17702 -1 - 330 Nucleotidyltransferase (EC 2.7.7.-) - none -
fig|6666666.229912.peg.299 CDS AEJL02000011.1 18432 18013 -3 - 420 Nucleotidyltransferase substrate binding protein, HI0074 - none -
fig|6666666.229912.peg.300 CDS AEJL02000011.1 19329 18472 -3 - 858 Naphthoate synthase (EC 4.1.3.36) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229912.peg.301 CDS AEJL02000011.1 20208 19441 -3 - 768 Triosephosphate isomerase (EC 5.3.1.1) CBSS-331978.3.peg.2915;
Glycolysis and Gluconeogenesis
fig|6666666.229912.peg.302 CDS AEJL02000011.1 20381 20824 2 + 444 Histone acetyltransferase HPA2 and related acetyltransferases CBSS-216591.1.peg.168
fig|6666666.229912.peg.303 CDS AEJL02000011.1 22265 20898 -2 - 1368 Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22) Heme and Siroheme Biosynthesis
fig|6666666.229912.peg.304 CDS AEJL02000011.1 22718 22284 -2 - 435 Periplasmic/membrane protein associated with DUF414 - none -
fig|6666666.229912.peg.305 CDS AEJL02000011.1 23291 22731 -2 - 561 Protein of unknown function DUF414 - none -
fig|6666666.229912.peg.306 CDS AEJL02000012.1 883 509 -1 - 375 SSU ribosomal protein S12p (S23e) Ribosomal protein S12p Asp methylthiotransferase
fig|6666666.229912.peg.307 CDS AEJL02000012.1 1413 1105 -3 - 309 Ketol-acid reductoisomerase (EC 1.1.1.86) Coenzyme A Biosynthesis
fig|6666666.229912.peg.308 CDS AEJL02000012.1 2045 2230 2 + 186 HTH-type transcriptional regulator IlvY Alanine biosynthesis;
LysR-family proteins in Escherichia coli;
LysR-family proteins in Salmonella enterica Typhimurium
fig|6666666.229912.peg.309 CDS AEJL02000012.1 2263 3144 1 + 882 Protein rarD - none -
fig|6666666.229912.peg.310 CDS AEJL02000012.1 3939 3139 -3 - 801 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) Chorismate Synthesis;
Cluster containing Alanyl-tRNA synthetase;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229912.peg.311 CDS AEJL02000012.1 4494 3943 -3 - 552 TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA - none -
fig|6666666.229912.peg.312 CDS AEJL02000012.1 5038 4499 -1 - 540 Similar to C-terminal Zn-finger domain of DNA topoisomerase I Conserved gene cluster associated with Met-tRNA formyltransferase;
DNA topoisomerases, Type I, ATP-independent
fig|6666666.229912.peg.313 CDS AEJL02000012.1 5041 6795 1 + 1755 DNA recombination protein RmuC DNA repair, bacterial
fig|6666666.229912.peg.314 CDS AEJL02000012.1 6921 7469 3 + 549 FIG00903983: hypothetical protein - none -
fig|6666666.229912.peg.315 CDS AEJL02000012.1 7481 7807 2 + 327 Thiosulfate sulfurtransferase GlpE (EC 2.8.1.1) Single-Rhodanese-domain proteins
fig|6666666.229912.peg.316 CDS AEJL02000012.1 8133 7819 -3 - 315 Uncharacterized protein PM1437 - none -
fig|6666666.229912.peg.317 CDS AEJL02000012.1 8176 9051 1 + 876 GlpG protein (membrane protein of glp regulon) - none -
fig|6666666.229912.peg.318 CDS AEJL02000012.1 9113 9868 2 + 756 Glycerol-3-phosphate regulon repressor GlpR - none -
fig|6666666.229912.peg.319 CDS AEJL02000012.1 10192 12648 1 + 2457 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229912.peg.320 CDS AEJL02000012.1 12670 12942 1 + 273 Probable tonB-dependent receptor HI1217 precursor - none -
fig|6666666.229912.peg.321 CDS AEJL02000012.1 15349 13532 -1 - 1818 ABC transporter ATP-binding protein - none -
fig|6666666.229912.peg.322 CDS AEJL02000012.1 15473 17131 2 + 1659 Mediator of hyperadherence YidE - none -
fig|6666666.229912.peg.323 CDS AEJL02000012.1 17143 17256 1 + 114 hypothetical protein - none -
fig|6666666.229912.peg.324 CDS AEJL02000012.1 17288 18001 2 + 714 Uridine monophosphate kinase (EC 2.7.4.22) CBSS-312309.3.peg.1965;
Ribosome recycling related cluster
fig|6666666.229912.peg.325 CDS AEJL02000012.1 18069 18212 3 + 144 hypothetical protein - none -
fig|6666666.229912.peg.326 CDS AEJL02000012.1 18226 18783 1 + 558 Ribosome recycling factor Ribosome recycling related cluster;
Translation termination factors bacterial
fig|6666666.229912.peg.327 CDS AEJL02000012.1 18812 20095 2 + 1284 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.267) CBSS-83331.1.peg.3039;
Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.229912.peg.328 CDS AEJL02000012.1 20117 20836 2 + 720 Undecaprenyl diphosphate synthase (EC 2.5.1.31) CBSS-83331.1.peg.3039;
Isoprenoid Biosynthesis;
Isoprenoinds for Quinones;
Polyprenyl Diphosphate Biosynthesis
fig|6666666.229912.peg.329 CDS AEJL02000012.1 20851 21720 1 + 870 Phosphatidate cytidylyltransferase (EC 2.7.7.41) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229912.peg.330 CDS AEJL02000012.1 21729 23063 3 + 1335 Intramembrane protease RasP/YluC, implicated in cell division based on FtsL cleavage CBSS-83331.1.peg.3039;
Periplasmic Stress Response
fig|6666666.229912.peg.331 CDS AEJL02000012.1 23082 25493 3 + 2412 Outer membrane protein assembly factor YaeT precursor Lipopolysaccharide assembly;
Llipid A biosynthesis cluster
fig|6666666.229912.peg.332 CDS AEJL02000012.1 25598 26173 2 + 576 Outer membrane chaperone Skp (OmpH) precursor @ Outer membrane protein H precursor Lipopolysaccharide assembly;
Llipid A biosynthesis cluster;
Periplasmic Stress Response
fig|6666666.229912.peg.333 CDS AEJL02000012.1 26173 27195 1 + 1023 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC 2.3.1.-) KDO2-Lipid A biosynthesis;
Llipid A biosynthesis cluster
fig|6666666.229912.peg.334 CDS AEJL02000012.1 27332 27742 2 + 411 3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabZ form (EC 4.2.1.59) Fatty Acid Biosynthesis FASII;
Llipid A biosynthesis cluster
fig|6666666.229912.peg.335 CDS AEJL02000012.1 27763 28551 1 + 789 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase (EC 2.3.1.129) KDO2-Lipid A biosynthesis;
Llipid A biosynthesis cluster
fig|6666666.229912.peg.336 CDS AEJL02000012.1 28636 29820 1 + 1185 Lipid-A-disaccharide synthase (EC 2.4.1.182) KDO2-Lipid A biosynthesis;
Llipid A biosynthesis cluster
fig|6666666.229912.peg.337 CDS AEJL02000012.1 29813 30412 2 + 600 Ribonuclease HII (EC 3.1.26.4) Conserved gene cluster associated with Met-tRNA formyltransferase;
Ribonuclease H
fig|6666666.229912.peg.338 CDS AEJL02000012.1 30452 32320 2 + 1869 Putative transport protein - none -
fig|6666666.229912.peg.339 CDS AEJL02000012.1 32331 32939 3 + 609 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229912.peg.340 CDS AEJL02000012.1 32950 33582 1 + 633 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229912.peg.341 CDS AEJL02000012.1 33582 34511 3 + 930 Phosphatidate cytidylyltransferase (EC 2.7.7.41) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229912.peg.342 CDS AEJL02000012.1 34601 35182 2 + 582 Molybdopterin biosynthesis molybdochelatase MogA Molybdenum cofactor biosynthesis
fig|6666666.229912.peg.343 CDS AEJL02000012.1 35691 35464 -3 - 228 hypothetical protein - none -
fig|6666666.229912.peg.344 CDS AEJL02000012.1 36762 35755 -3 - 1008 hypothetical protein - none -
fig|6666666.229912.peg.345 CDS AEJL02000012.1 39645 36772 -3 - 2874 hypothetical protein - none -
fig|6666666.229912.peg.346 CDS AEJL02000012.1 39977 39645 -2 - 333 hypothetical protein - none -
fig|6666666.229912.peg.347 CDS AEJL02000013.1 915 97 -3 - 819 Peptide transport system ATP-binding protein SapF Peptide ABC transport system Sap
fig|6666666.229912.peg.348 CDS AEJL02000013.1 1971 919 -3 - 1053 Peptide transport system ATP-binding protein SapD Peptide ABC transport system Sap
fig|6666666.229912.peg.349 CDS AEJL02000013.1 2866 1979 -1 - 888 Peptide transport system permease protein SapC Peptide ABC transport system Sap
fig|6666666.229912.peg.350 CDS AEJL02000013.1 3821 2856 -2 - 966 Peptide transport system permease protein SapB Peptide ABC transport system Sap
fig|6666666.229912.peg.351 CDS AEJL02000013.1 5452 3821 -1 - 1632 Peptide transport periplasmic protein SapA Peptide ABC transport system Sap
fig|6666666.229912.peg.352 CDS AEJL02000013.1 5718 7133 3 + 1416 Conserved protein YcjX with nucleoside triphosphate hydrolase domain A conserved operon linked to TyrR and possibly involved in virulence
fig|6666666.229912.peg.353 CDS AEJL02000013.1 7146 8225 3 + 1080 Membrane protein YcjF A conserved operon linked to TyrR and possibly involved in virulence
fig|6666666.229912.peg.354 CDS AEJL02000013.1 8309 9268 2 + 960 Transcriptional repressor protein TyrR Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate);
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229912.peg.355 CDS AEJL02000013.1 9631 9323 -1 - 309 GTP-binding protein HflX Hfl operon;
Universal GTPases
fig|6666666.229912.peg.356 CDS AEJL02000013.1 9942 9646 -3 - 297 RNA-binding protein Hfq Hfl operon;
Polyadenylation bacterial
fig|6666666.229912.peg.357 CDS AEJL02000013.1 11006 10062 -2 - 945 tRNA dimethylallyltransferase (EC 2.5.1.75) tRNA modification Bacteria;
tRNA processing
fig|6666666.229912.peg.358 CDS AEJL02000013.1 12871 11021 -1 - 1851 DNA mismatch repair protein MutL DNA repair, bacterial MutL-MutS system
fig|6666666.229912.peg.359 CDS AEJL02000013.1 14358 12871 -3 - 1488 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) Murein Hydrolases;
Recycling of Peptidoglycan Amino Acids
fig|6666666.229912.peg.360 CDS AEJL02000013.1 14849 14355 -2 - 495 TsaE protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA Scaffold proteins for [4Fe-4S] cluster assembly (MRP family);
YjeE;
YrdC-YciO-Sua5 protein family
fig|6666666.229912.peg.361 CDS AEJL02000013.1 14824 14952 1 + 129 hypothetical protein - none -
fig|6666666.229912.peg.362 CDS AEJL02000013.1 16798 15005 -1 - 1794 Mlr4739 protein - none -
fig|6666666.229912.peg.363 CDS AEJL02000014.1 330 461 3 + 132 hypothetical protein - none -
fig|6666666.229912.peg.364 CDS AEJL02000014.1 608 832 2 + 225 Twin-arginine translocation protein TatA Cluster-based Subsystem Grouping Hypotheticals - perhaps Proteosome Related;
Twin-arginine translocation system
fig|6666666.229912.peg.365 CDS AEJL02000014.1 836 1498 2 + 663 Twin-arginine translocation protein TatB Twin-arginine translocation system
fig|6666666.229912.peg.366 CDS AEJL02000014.1 1536 2300 3 + 765 Twin-arginine translocation protein TatC Cluster-based Subsystem Grouping Hypotheticals - perhaps Proteosome Related;
Twin-arginine translocation system
fig|6666666.229912.peg.367 CDS AEJL02000014.1 2321 3343 2 + 1023 Porphobilinogen synthase (EC 4.2.1.24) Heme and Siroheme Biosynthesis
fig|6666666.229912.peg.368 CDS AEJL02000014.1 3958 4329 1 + 372 LSU ribosomal protein L14p (L23e) Ribosome LSU bacterial
fig|6666666.229912.peg.369 CDS AEJL02000014.1 4340 4651 2 + 312 LSU ribosomal protein L24p (L26e) Ribosome LSU bacterial
fig|6666666.229912.peg.370 CDS AEJL02000014.1 4780 5208 1 + 429 LSU ribosomal protein L5p (L11e) Ribosome LSU bacterial
fig|6666666.229912.peg.371 CDS AEJL02000014.1 5221 5526 1 + 306 SSU ribosomal protein S14p (S29e) @ SSU ribosomal protein S14p (S29e), zinc-independent - none -
fig|6666666.229912.peg.372 CDS AEJL02000014.1 5563 5955 1 + 393 SSU ribosomal protein S8p (S15Ae) - none -
fig|6666666.229912.peg.373 CDS AEJL02000014.1 5971 6504 1 + 534 LSU ribosomal protein L6p (L9e) Ribosome LSU bacterial
fig|6666666.229912.peg.374 CDS AEJL02000014.1 6518 6871 2 + 354 LSU ribosomal protein L18p (L5e) Ribosome LSU bacterial
fig|6666666.229912.peg.375 CDS AEJL02000014.1 6887 7387 2 + 501 SSU ribosomal protein S5p (S2e) - none -
fig|6666666.229912.peg.376 CDS AEJL02000014.1 7577 8011 2 + 435 LSU ribosomal protein L15p (L27Ae) Ribosome LSU bacterial
fig|6666666.229912.peg.377 CDS AEJL02000014.1 8015 9340 2 + 1326 Preprotein translocase secY subunit (TC 3.A.5.1.1) - none -
fig|6666666.229912.peg.378 CDS AEJL02000014.1 9367 9480 1 + 114 LSU ribosomal protein L36p Ribosome LSU bacterial
fig|6666666.229912.peg.379 CDS AEJL02000014.1 9618 9974 3 + 357 SSU ribosomal protein S13p (S18e) - none -
fig|6666666.229912.peg.380 CDS AEJL02000014.1 9990 10379 3 + 390 SSU ribosomal protein S11p (S14e) - none -
fig|6666666.229912.peg.381 CDS AEJL02000014.1 10409 11029 2 + 621 SSU ribosomal protein S4p (S9e) - none -
fig|6666666.229912.peg.382 CDS AEJL02000014.1 11058 12047 3 + 990 DNA-directed RNA polymerase alpha subunit (EC 2.7.7.6) RNA polymerase bacterial
fig|6666666.229912.peg.383 CDS AEJL02000014.1 12089 12478 2 + 390 LSU ribosomal protein L17p Ribosome LSU bacterial
fig|6666666.229912.peg.384 CDS AEJL02000014.1 13994 12774 -2 - 1221 Tyrosine-specific transport protein - none -
fig|6666666.229912.peg.385 CDS AEJL02000014.1 14117 14004 -2 - 114 hypothetical protein - none -
fig|6666666.229912.peg.386 CDS AEJL02000014.1 14807 14124 -2 - 684 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases - none -
fig|6666666.229912.peg.387 CDS AEJL02000014.1 16094 14823 -2 - 1272 Nicotinamide-nucleotide adenylyltransferase, NadR family (EC 2.7.7.1) / Ribosylnicotinamide kinase (EC 2.7.1.22) NAD and NADP cofactor biosynthesis global;
NAD and NADP cofactor biosynthesis global
fig|6666666.229912.peg.388 CDS AEJL02000014.1 16393 16145 -1 - 249 FIG01200701: hypothetical protein - none -
fig|6666666.229912.peg.389 CDS AEJL02000014.1 16547 16422 -2 - 126 tRNA 5-methylaminomethyl-2-thiouridine synthase TusA mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.229912.peg.390 CDS AEJL02000014.1 16624 16752 1 + 129 hypothetical protein - none -
fig|6666666.229912.peg.391 CDS AEJL02000014.1 16749 16904 3 + 156 FIG000605: protein co-occurring with transport systems (COG1739) Transport system clustering with HemG
fig|6666666.229912.peg.392 CDS AEJL02000014.1 16898 17017 2 + 120 FIG000605: protein co-occurring with transport systems (COG1739) Transport system clustering with HemG
fig|6666666.229912.peg.393 CDS AEJL02000014.1 17048 17263 2 + 216 FIG000605: protein co-occurring with transport systems (COG1739) Transport system clustering with HemG
fig|6666666.229912.peg.394 CDS AEJL02000014.1 17282 18745 2 + 1464 Potassium uptake protein TrkH Hyperosmotic potassium uptake;
Potassium homeostasis;
Potassium homeostasis;
Transport system clustering with HemG
fig|6666666.229912.peg.395 CDS AEJL02000014.1 18745 19257 1 + 513 Protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-) Heme and Siroheme Biosynthesis;
Transport system clustering with HemG
fig|6666666.229912.peg.396 CDS AEJL02000015.1 750 896 3 + 147 hypothetical protein - none -
fig|6666666.229912.peg.397 CDS AEJL02000015.1 1884 1228 -3 - 657 Mobile element protein - none -
fig|6666666.229912.peg.398 CDS AEJL02000015.1 2200 2036 -1 - 165 Mobile element protein - none -
fig|6666666.229912.peg.399 CDS AEJL02000015.1 5388 4384 -3 - 1005 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis;
Pyridoxin (Vitamin B6) Biosynthesis
fig|6666666.229912.peg.400 CDS AEJL02000015.1 5559 6269 3 + 711 Guanylate kinase (EC 2.7.4.8) CBSS-323097.3.peg.2594;
Purine conversions
fig|6666666.229912.peg.401 CDS AEJL02000015.1 6336 6602 3 + 267 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) CBSS-176299.4.peg.1292;
RNA polymerase bacterial
fig|6666666.229912.peg.402 CDS AEJL02000015.1 6648 8771 3 + 2124 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II / Guanosine-3@1,5@1-bis(diphosphate) 3@1-pyrophosphohydrolase (EC 3.1.7.2) CBSS-176299.4.peg.1292;
CBSS-176299.4.peg.1292;
Stringent Response, (p)ppGpp metabolism;
Stringent Response, (p)ppGpp metabolism
fig|6666666.229912.peg.403 CDS AEJL02000015.1 8773 10854 1 + 2082 ATP-dependent DNA helicase RecG (EC 3.6.1.-) - none -
fig|6666666.229912.peg.404 CDS AEJL02000015.1 10847 11341 2 + 495 Chorismate--pyruvate lyase (EC 4.1.3.40) Ubiquinone Biosynthesis
fig|6666666.229912.peg.405 CDS AEJL02000015.1 11375 12202 2 + 828 Glutamate racemase (EC 5.1.1.3) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Peptidoglycan Biosynthesis
fig|6666666.229912.peg.406 CDS AEJL02000016.1 1214 102 -2 - 1113 Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like Scaffold proteins for [4Fe-4S] cluster assembly (MRP family)
fig|6666666.229912.peg.407 CDS AEJL02000016.1 1387 3447 1 + 2061 Methionyl-tRNA synthetase (EC 6.1.1.10) Scaffold proteins for [4Fe-4S] cluster assembly (MRP family);
tRNA aminoacylation, Met
fig|6666666.229912.peg.408 CDS AEJL02000016.1 3775 3581 -1 - 195 Believed to be involved in assembly of Fe-S clusters tRNA modification Bacteria
fig|6666666.229912.peg.409 CDS AEJL02000016.1 4116 3775 -3 - 342 Ferredoxin, 2Fe-2S Alanine biosynthesis;
Soluble cytochromes and functionally related electron carriers;
tRNA modification Bacteria
fig|6666666.229912.peg.410 CDS AEJL02000016.1 5987 4128 -2 - 1860 Chaperone protein HscA Alanine biosynthesis;
Protein chaperones;
tRNA modification Bacteria
fig|6666666.229912.peg.411 CDS AEJL02000016.1 6529 6008 -1 - 522 Chaperone protein HscB Protein chaperones;
tRNA modification Bacteria
fig|6666666.229912.peg.412 CDS AEJL02000016.1 6864 6541 -3 - 324 Iron binding protein IscA for iron-sulfur cluster assembly Alanine biosynthesis;
tRNA modification Bacteria
fig|6666666.229912.peg.413 CDS AEJL02000016.1 7379 6996 -2 - 384 Iron-sulfur cluster assembly scaffold protein IscU Alanine biosynthesis;
tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229912.peg.414 CDS AEJL02000016.1 8653 7439 -1 - 1215 Cysteine desulfurase (EC 2.8.1.7), IscS subfamily Alanine biosynthesis;
Thiamin biosynthesis;
mnm5U34 biosynthesis bacteria;
tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229912.peg.415 CDS AEJL02000016.1 9180 8707 -3 - 474 Iron-sulfur cluster regulator IscR Alanine biosynthesis;
Rrf2 family transcriptional regulators
fig|6666666.229912.peg.416 CDS AEJL02000016.1 9982 9242 -1 - 741 tRNA:Cm32/Um32 methyltransferase RNA methylation;
tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229912.peg.417 CDS AEJL02000016.1 10133 10933 2 + 801 Inositol-1-monophosphatase (EC 3.1.3.25) - none -
fig|6666666.229912.peg.418 CDS AEJL02000016.1 11247 11089 -3 - 159 hypothetical protein - none -
fig|6666666.229912.peg.419 CDS AEJL02000016.1 11773 11624 -1 - 150 hypothetical protein - none -
fig|6666666.229912.peg.420 CDS AEJL02000017.1 913 1617 1 + 705 Alpha-aspartyl dipeptidase Peptidase E (EC 3.4.13.21) Dipeptidases (EC 3.4.13.-)
fig|6666666.229912.peg.421 CDS AEJL02000017.1 3158 1701 -2 - 1458 tRNA S(4)U 4-thiouridine synthase (former ThiI) / Rhodanese-like domain required for thiamine synthesis Thiamin biosynthesis;
Thiamin biosynthesis;
tRNA modification Archaea;
tRNA modification Archaea;
tRNA modification Bacteria;
tRNA modification Bacteria
fig|6666666.229912.peg.422 CDS AEJL02000017.1 3464 4564 2 + 1101 Cytochrome c-type protein TorY - none -
fig|6666666.229912.peg.423 CDS AEJL02000017.1 4625 7096 2 + 2472 Trimethylamine-N-oxide reductase (EC 1.6.6.9) - none -
fig|6666666.229912.peg.424 CDS AEJL02000017.1 7946 7167 -2 - 780 Protein of unknown function DUF419 - none -
fig|6666666.229912.peg.425 CDS AEJL02000017.1 8176 9633 1 + 1458 2-oxoglutarate/malate translocator - none -
fig|6666666.229912.peg.426 CDS AEJL02000017.1 9848 10102 2 + 255 RelB/StbD replicon stabilization protein (antitoxin to RelE/StbE) Toxin-antitoxin replicon stabilization systems
fig|6666666.229912.peg.427 CDS AEJL02000017.1 10099 10251 1 + 153 StbE replicon stabilization toxin - none -
fig|6666666.229912.peg.428 CDS AEJL02000017.1 10235 10381 2 + 147 RelE/StbE replicon stabilization toxin Toxin-antitoxin replicon stabilization systems
fig|6666666.229912.peg.429 CDS AEJL02000017.1 11179 10394 -1 - 786 tRNA pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses;
tRNA modification Archaea;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229912.peg.430 CDS AEJL02000017.1 11732 11340 -2 - 393 SSU ribosomal protein S9p (S16e) - none -
fig|6666666.229912.peg.431 CDS AEJL02000017.1 12177 11749 -3 - 429 LSU ribosomal protein L13p (L13Ae) Ribosome LSU bacterial
fig|6666666.229912.peg.432 CDS AEJL02000017.1 13015 12419 -1 - 597 hypothetical protein - none -
fig|6666666.229912.peg.433 CDS AEJL02000017.1 15007 13028 -1 - 1980 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) DNA repair, bacterial RecBCD pathway
fig|6666666.229912.peg.434 CDS AEJL02000017.1 18507 15007 -3 - 3501 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) DNA repair, bacterial RecBCD pathway
fig|6666666.229912.peg.435 CDS AEJL02000018.1 98 547 2 + 450 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) Glycogen metabolism;
Glycogen metabolism cluster;
Maltose and Maltodextrin Utilization;
Maltose utilization cluster
fig|6666666.229912.peg.436 CDS AEJL02000018.1 569 694 2 + 126 hypothetical protein - none -
fig|6666666.229912.peg.437 CDS AEJL02000018.1 1233 691 -3 - 543 Colicin V production protein - none -
fig|6666666.229912.peg.438 CDS AEJL02000018.1 1855 1412 -1 - 444 FIG00638298: membrane protein YfbV - none -
fig|6666666.229912.peg.439 CDS AEJL02000018.1 2123 3325 2 + 1203 Acetate kinase (EC 2.7.2.1) Fermentations: Lactate;
Fermentations: Mixed acid;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229912.peg.440 CDS AEJL02000018.1 3395 5530 2 + 2136 Phosphate acetyltransferase (EC 2.3.1.8) Fermentations: Lactate;
Fermentations: Mixed acid;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229912.peg.441 CDS AEJL02000018.1 5877 6239 3 + 363 hypothetical protein - none -
fig|6666666.229912.peg.442 CDS AEJL02000018.1 6810 6310 -3 - 501 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) Folate Biosynthesis;
Folate biosynthesis cluster
fig|6666666.229912.peg.443 CDS AEJL02000018.1 8269 6803 -1 - 1467 Poly(A) polymerase (EC 2.7.7.19) Polyadenylation bacterial
fig|6666666.229912.peg.444 CDS AEJL02000018.1 8823 8386 -3 - 438 C4-type zinc finger protein, DksA/TraR family - none -
fig|6666666.229912.peg.445 CDS AEJL02000018.1 9316 11550 1 + 2235 DNA internalization-related competence protein ComEC/Rec2 KDO2-Lipid A biosynthesis;
KDO2-Lipid A biosynthesis cluster 2
fig|6666666.229912.peg.446 CDS AEJL02000018.1 11597 13345 2 + 1749 Lipid A export ATP-binding/permease protein MsbA (EC 3.6.3.25) KDO2-Lipid A biosynthesis;
KDO2-Lipid A biosynthesis cluster 2
fig|6666666.229912.peg.447 CDS AEJL02000018.1 13364 14338 2 + 975 Tetraacyldisaccharide 4@1-kinase (EC 2.7.1.130) KDO2-Lipid A biosynthesis;
KDO2-Lipid A biosynthesis cluster 2
fig|6666666.229912.peg.448 CDS AEJL02000018.1 14360 14539 2 + 180 FIG002473: Protein YcaR in KDO2-Lipid A biosynthesis cluster Broadly distributed proteins not in subsystems;
KDO2-Lipid A biosynthesis cluster 2
fig|6666666.229912.peg.449 CDS AEJL02000018.1 14541 15314 3 + 774 3-deoxy-manno-octulosonate cytidylyltransferase (EC 2.7.7.38) KDO2-Lipid A biosynthesis;
KDO2-Lipid A biosynthesis cluster 2
fig|6666666.229912.peg.450 CDS AEJL02000018.1 15443 17272 2 + 1830 Excinuclease ABC subunit C DNA repair, UvrABC system
fig|6666666.229912.peg.451 CDS AEJL02000018.1 18750 17659 -3 - 1092 Possible ABC transporter, periplasmic substrate X binding protein precursor ABC transporter of unknown substrate X
fig|6666666.229912.peg.452 CDS AEJL02000018.1 19621 18770 -1 - 852 Putative ABC transporter of substrate X, permease subunit II ABC transporter of unknown substrate X
fig|6666666.229912.peg.453 CDS AEJL02000018.1 20487 19618 -3 - 870 Putative ABC transporter of substrate X, permease subunit I ABC transporter of unknown substrate X
fig|6666666.229912.peg.454 CDS AEJL02000018.1 21554 20484 -2 - 1071 Putative ABC transporter of substrate X, ATP-binding subunit ABC transporter of unknown substrate X
fig|6666666.229912.peg.455 CDS AEJL02000018.1 22891 21782 -1 - 1110 Selenide,water dikinase (EC 2.7.9.3) Selenocysteine metabolism;
tRNA modification Bacteria
fig|6666666.229912.peg.456 CDS AEJL02000018.1 24251 23403 -2 - 849 filamentation induced by cAMP protein Fic-like protein - none -
fig|6666666.229912.peg.457 CDS AEJL02000018.1 24760 24879 1 + 120 hypothetical protein - none -
fig|6666666.229912.peg.458 CDS AEJL02000018.1 25092 24850 -3 - 243 DNA-damage-inducible protein d - none -
fig|6666666.229912.peg.459 CDS AEJL02000018.1 26697 25273 -3 - 1425 NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) Phosphate metabolism
fig|6666666.229912.peg.460 CDS AEJL02000018.1 28243 26708 -1 - 1536 NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2) Phosphate metabolism
fig|6666666.229912.peg.461 CDS AEJL02000018.1 28536 29261 3 + 726 Sugar/maltose fermentation stimulation protein homolog Fermentations: Mixed acid
fig|6666666.229912.peg.462 CDS AEJL02000018.1 29509 30696 1 + 1188 Tyrosyl-tRNA synthetase (EC 6.1.1.1) tRNA aminoacylation, Tyr
fig|6666666.229912.peg.463 CDS AEJL02000018.1 30823 31434 1 + 612 hypothetical protein - none -
fig|6666666.229912.peg.464 CDS AEJL02000018.1 31527 31679 3 + 153 hypothetical protein - none -
fig|6666666.229912.peg.465 CDS AEJL02000018.1 32641 31721 -1 - 921 tRNA pseudouridine synthase B (EC 4.2.1.70) CBSS-138119.3.peg.2719;
RNA pseudouridine syntheses;
Riboflavin, FMN and FAD metabolism in plants;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229912.peg.466 CDS AEJL02000018.1 33027 32641 -3 - 387 Ribosome-binding factor A CBSS-138119.3.peg.2719;
NusA-TFII Cluster;
Translation initiation factors bacterial
fig|6666666.229912.peg.467 CDS AEJL02000018.1 36051 33559 -3 - 2493 Translation initiation factor 2 CBSS-138119.3.peg.2719;
NusA-TFII Cluster;
Translation initiation factors bacterial;
Universal GTPases
fig|6666666.229912.peg.468 CDS AEJL02000018.1 37563 36067 -3 - 1497 Transcription termination protein NusA NusA-TFII Cluster;
Transcription factors bacterial
fig|6666666.229912.peg.469 CDS AEJL02000018.1 38046 37591 -3 - 456 FIG000325: clustered with transcription termination protein NusA NusA-TFII Cluster;
Transcription factors bacterial
fig|6666666.229912.peg.470 CDS AEJL02000018.1 38775 38957 3 + 183 hypothetical protein - none -
fig|6666666.229912.peg.471 CDS AEJL02000019.1 45 206 3 + 162 Programmed cell death toxin ChpB - none -
fig|6666666.229912.peg.472 CDS AEJL02000019.1 1411 284 -1 - 1128 Chaperone protein DnaJ GroEL GroES;
Heat shock dnaK gene cluster extended;
Protein chaperones
fig|6666666.229912.peg.473 CDS AEJL02000019.1 3747 1846 -3 - 1902 Chaperone protein DnaK GroEL GroES;
Heat shock dnaK gene cluster extended;
Protein chaperones
fig|6666666.229912.peg.474 CDS AEJL02000019.1 4036 5469 1 + 1434 Putative GTP-binding protein YdgA - none -
fig|6666666.229912.peg.475 CDS AEJL02000019.1 5804 5556 -2 - 249 Mobile element protein - none -
fig|6666666.229912.peg.476 CDS AEJL02000019.1 6031 5846 -1 - 186 Mobile element protein - none -
fig|6666666.229912.peg.477 CDS AEJL02000019.1 6510 7244 3 + 735 Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229912.peg.478 CDS AEJL02000019.1 7213 8016 1 + 804 Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229912.peg.479 CDS AEJL02000019.1 8019 8633 3 + 615 ABC transporter ATP-binding protein - none -
fig|6666666.229912.peg.480 CDS AEJL02000019.1 8630 9490 2 + 861 Molybdenum transport system protein ModD Molybdenum cofactor biosynthesis
fig|6666666.229912.peg.481 CDS AEJL02000019.1 9787 11235 1 + 1449 TldD protein, part of TldE/TldD proteolytic complex CBSS-354.1.peg.2917;
Putative TldE-TldD proteolytic complex
fig|6666666.229912.peg.482 CDS AEJL02000019.1 11301 17072 3 + 5772 FIG00904191: hypothetical protein - none -
fig|6666666.229912.peg.483 CDS AEJL02000019.1 17206 18255 1 + 1050 Putative membrane protein YeiH - none -
fig|6666666.229912.peg.484 CDS AEJL02000019.1 18423 20732 3 + 2310 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) DNA uptake cluster;
Peptidoglycan Biosynthesis;
Type IV pilus
fig|6666666.229912.peg.485 CDS AEJL02000020.1 1677 775 -3 - 903 hypothetical protein - none -
fig|6666666.229912.peg.486 CDS AEJL02000021.1 12 335 3 + 324 Na(+)-translocating NADH-quinone reductase subunit C (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229912.peg.487 CDS AEJL02000021.1 335 964 2 + 630 Na(+)-translocating NADH-quinone reductase subunit D (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229912.peg.488 CDS AEJL02000021.1 968 1564 2 + 597 Na(+)-translocating NADH-quinone reductase subunit E (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229912.peg.489 CDS AEJL02000021.1 1576 2811 1 + 1236 Na(+)-translocating NADH-quinone reductase subunit F (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229912.peg.490 CDS AEJL02000021.1 2816 2965 2 + 150 hypothetical protein - none -
fig|6666666.229912.peg.491 CDS AEJL02000021.1 2962 4050 1 + 1089 Thiamin biosynthesis lipoprotein ApbE - none -
fig|6666666.229912.peg.492 CDS AEJL02000021.1 4129 4386 1 + 258 Probable exported or periplasmic protein in ApbE locus Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229912.peg.493 CDS AEJL02000021.1 4647 5798 3 + 1152 tRNA-specific 2-thiouridylase MnmA RNA methylation
fig|6666666.229912.peg.494 CDS AEJL02000021.1 6029 6169 2 + 141 hypothetical protein - none -
fig|6666666.229912.peg.495 CDS AEJL02000021.1 6253 6369 1 + 117 hypothetical protein - none -
fig|6666666.229912.peg.496 CDS AEJL02000021.1 6438 7748 3 + 1311 Enolase (EC 4.2.1.11) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis;
Serine-glyoxylate cycle
fig|6666666.229912.peg.497 CDS AEJL02000021.1 8264 7845 -2 - 420 Putative Holliday junction resolvase YggF Cluster containing Alanyl-tRNA synthetase;
Cluster containing Glutathione synthetase
fig|6666666.229912.peg.498 CDS AEJL02000021.1 8821 8264 -1 - 558 UPF0301 protein YqgE Cluster containing Glutathione synthetase
fig|6666666.229912.peg.499 CDS AEJL02000021.1 9573 8839 -3 - 735 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) Cluster containing Glutathione synthetase;
Heat shock dnaK gene cluster extended;
RNA methylation
fig|6666666.229912.peg.500 CDS AEJL02000021.1 9572 9703 2 + 132 hypothetical protein - none -
fig|6666666.229912.peg.501 CDS AEJL02000021.1 9977 9660 -2 - 318 Methionine repressor MetJ Methionine Biosynthesis
fig|6666666.229912.peg.502 CDS AEJL02000021.1 11019 10132 -3 - 888 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) - none -
fig|6666666.229912.peg.503 CDS AEJL02000021.1 12414 11095 -3 - 1320 Phosphomannomutase (EC 5.4.2.8) Mannose Metabolism
fig|6666666.229912.peg.504 CDS AEJL02000021.1 12673 12491 -1 - 183 Carbon storage regulator Carbon Starvation;
Carbon storage regulator
fig|6666666.229912.peg.505 CDS AEJL02000021.1 15420 12796 -3 - 2625 Alanyl-tRNA synthetase (EC 6.1.1.7) Cluster containing Alanyl-tRNA synthetase;
tRNA aminoacylation, Ala
fig|6666666.229912.peg.506 CDS AEJL02000021.1 16045 15620 -1 - 426 Universal stress protein A Universal stress protein family
fig|6666666.229912.peg.507 CDS AEJL02000021.1 16164 17021 3 + 858 Nucleoside triphosphate pyrophosphohydrolase MazG (EC 3.6.1.8) Nucleoside triphosphate pyrophosphohydrolase MazG
fig|6666666.229912.peg.508 CDS AEJL02000021.1 18108 17119 -3 - 990 Cytosine deaminase (EC 3.5.4.1) CBSS-326442.4.peg.1852;
Creatine and Creatinine Degradation;
pyrimidine conversions
fig|6666666.229912.peg.509 CDS AEJL02000021.1 18094 18231 1 + 138 hypothetical protein - none -
fig|6666666.229912.peg.510 CDS AEJL02000021.1 20107 18368 -1 - 1740 FIG001881: hydrolase of alkaline phosphatase superfamily CBSS-211586.1.peg.1979
fig|6666666.229912.peg.511 CDS AEJL02000021.1 20336 20112 -2 - 225 FIG002927: hypothetical protein CBSS-211586.1.peg.1979
fig|6666666.229912.peg.512 CDS AEJL02000021.1 20462 21487 2 + 1026 Nucleoid-associated protein NdpA CBSS-211586.1.peg.1979
fig|6666666.229912.peg.513 CDS AEJL02000021.1 21553 21966 1 + 414 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex Lipopolysaccharide assembly
fig|6666666.229912.peg.514 CDS AEJL02000021.1 22008 22703 3 + 696 Copper-sensing two-component system response regulator CpxR Orphan regulatory proteins
fig|6666666.229912.peg.515 CDS AEJL02000021.1 22748 24136 2 + 1389 Copper sensory histidine kinase CpxA Orphan regulatory proteins
fig|6666666.229912.peg.516 CDS AEJL02000021.1 25400 24192 -2 - 1209 Sodium/glutamate symport protein - none -
fig|6666666.229912.peg.517 CDS AEJL02000021.1 26000 25566 -2 - 435 D-tyrosyl-tRNA(Tyr) deacylase (EC 3.6.1.n1) - none -
fig|6666666.229912.peg.518 CDS AEJL02000021.1 26827 25997 -1 - 831 Ribonuclease BN (EC 3.1.-.-) - none -
fig|6666666.229912.peg.519 CDS AEJL02000021.1 27297 26824 -3 - 474 UPF0225 protein YchJ Broadly distributed proteins not in subsystems
fig|6666666.229912.peg.520 CDS AEJL02000021.1 27968 27300 -2 - 669 Uncharacterized protein conserved in bacteria - none -
fig|6666666.229912.peg.521 CDS AEJL02000021.1 28094 29593 2 + 1500 ATPase component BioM of energizing module of biotin ECF transporter Biotin biosynthesis;
Biotin synthesis cluster
fig|6666666.229912.peg.522 CDS AEJL02000021.1 29931 30746 3 + 816 putative tetracenomycin polyketide synthesis O-methyltransferase - none -
fig|6666666.229912.peg.523 CDS AEJL02000021.1 31728 30835 -3 - 894 Transcriptional regulator, LysR family - none -
fig|6666666.229912.peg.524 CDS AEJL02000021.1 31911 32756 3 + 846 oxidoreductase of aldo/keto reductase family, subgroup 1 - none -
fig|6666666.229912.peg.525 CDS AEJL02000021.1 32820 33800 3 + 981 Aldo-keto reductase - none -
fig|6666666.229912.peg.526 CDS AEJL02000021.1 34026 35681 3 + 1656 Carboxylesterase type B - none -
fig|6666666.229912.peg.527 CDS AEJL02000021.1 35818 36927 1 + 1110 Putative exported protein precursor - none -
fig|6666666.229912.peg.528 CDS AEJL02000021.1 37956 37066 -3 - 891 Transcriptional regulator, LysR family - none -
fig|6666666.229912.peg.529 CDS AEJL02000021.1 38056 39120 1 + 1065 FIG01220323: hypothetical protein - none -
fig|6666666.229912.peg.530 CDS AEJL02000021.1 41104 39272 -1 - 1833 Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) Sialic Acid Metabolism;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229912.peg.531 CDS AEJL02000021.1 41955 41158 -3 - 798 Transcriptional regulator of glmS gene, DeoR family - none -
fig|6666666.229912.peg.532 CDS AEJL02000021.1 42353 42081 -2 - 273 DNA-binding protein HU-alpha DNA structural proteins, bacterial;
DNA uptake cluster
fig|6666666.229912.peg.533 CDS AEJL02000021.1 43110 42520 -3 - 591 FIG01200173: hypothetical protein - none -
fig|6666666.229912.peg.534 CDS AEJL02000021.1 44192 43128 -2 - 1065 Uroporphyrinogen III decarboxylase (EC 4.1.1.37) Heme and Siroheme Biosynthesis
fig|6666666.229912.peg.535 CDS AEJL02000021.1 45080 44361 -2 - 720 NADH pyrophosphatase (EC 3.6.1.22) DNA uptake cluster;
Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229912.peg.536 CDS AEJL02000021.1 45773 45129 -2 - 645 converved hypothetical protein - none -
fig|6666666.229912.peg.537 CDS AEJL02000021.1 46031 47647 2 + 1617 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) CBSS-584.1.peg.3382;
Pyruvate metabolism I: anaplerotic reactions, PEP;
Serine-glyoxylate cycle
fig|6666666.229912.peg.538 CDS AEJL02000021.1 49259 47712 -2 - 1548 Exopolyphosphatase (EC 3.6.1.11) Phosphate metabolism;
Polyphosphate
fig|6666666.229912.peg.539 CDS AEJL02000021.1 53143 49262 -1 - 3882 Uncharacterized protein YtfN Cluster Ytf and putative sugar transporter;
Putative sugar ABC transporter (ytf cluster)
fig|6666666.229912.peg.540 CDS AEJL02000021.1 55030 53171 -1 - 1860 Uncharacterized protein YtfM precursor Cluster Ytf and putative sugar transporter;
Putative sugar ABC transporter (ytf cluster)
fig|6666666.229912.peg.541 CDS AEJL02000021.1 55727 55098 -2 - 630 Nitrate/nitrite response regulator protein - none -
fig|6666666.229912.peg.542 CDS AEJL02000021.1 58238 55737 -2 - 2502 Adenylate cyclase (EC 4.6.1.1) cAMP signaling in bacteria
fig|6666666.229912.peg.543 CDS AEJL02000021.1 58394 59320 2 + 927 Porphobilinogen deaminase (EC 2.5.1.61) Heme and Siroheme Biosynthesis
fig|6666666.229912.peg.544 CDS AEJL02000021.1 59334 60080 3 + 747 Uroporphyrinogen-III synthase (EC 4.2.1.75) Heme and Siroheme Biosynthesis
fig|6666666.229912.peg.545 CDS AEJL02000021.1 60111 61496 3 + 1386 Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) Heme and Siroheme Biosynthesis
fig|6666666.229912.peg.546 CDS AEJL02000021.1 61509 62759 3 + 1251 Uncharacterized protein EC-HemY, likely associated with heme metabolism based on gene clustering with hemC, hemD in Proteobacteria (unrelated to HemY-type PPO in GramPositives) - none -
fig|6666666.229912.peg.547 CDS AEJL02000021.1 63565 62828 -1 - 738 Putative preQ0 transporter Queuosine-Archaeosine Biosynthesis
fig|6666666.229912.peg.548 CDS AEJL02000021.1 63827 64108 2 + 282 hypothetical protein - none -
fig|6666666.229912.peg.549 CDS AEJL02000021.1 64294 64881 1 + 588 DNA-directed RNA polymerase specialized sigma subunit, sigma24-like - none -
fig|6666666.229912.peg.550 CDS AEJL02000021.1 64896 65087 3 + 192 hypothetical protein - none -
fig|6666666.229912.peg.551 CDS AEJL02000021.1 65652 65170 -3 - 483 Transcription elongation factor GreB CBSS-243265.1.peg.198;
Transcription factors bacterial
fig|6666666.229912.peg.552 CDS AEJL02000021.1 65863 65994 1 + 132 Transcription accessory protein (S1 RNA-binding domain) CBSS-243265.1.peg.198;
Cell division-ribosomal stress proteins cluster;
Transcription factors bacterial
fig|6666666.229912.peg.553 CDS AEJL02000021.1 66988 66389 -1 - 600 Phosphoglycerate mutase (EC 5.4.2.1) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis;
Phosphoglycerate mutase protein family
fig|6666666.229912.peg.554 CDS AEJL02000021.1 68469 67000 -3 - 1470 Sodium-dependent transporter - none -
fig|6666666.229912.peg.555 CDS AEJL02000022.1 65 790 2 + 726 RuBisCO operon transcriptional regulator CO2 uptake, carboxysome
fig|6666666.229912.peg.556 CDS AEJL02000023.1 287 916 2 + 630 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) - none -
fig|6666666.229912.peg.557 CDS AEJL02000023.1 2417 2193 -2 - 225 hypothetical protein - none -
fig|6666666.229912.peg.558 CDS AEJL02000023.1 2938 2612 -1 - 327 NAD(P)H oxidoreductase YRKL (EC 1.6.99.-) @ Putative NADPH-quinone reductase (modulator of drug activity B) @ Flavodoxin 2 Flavodoxin;
Flavodoxin
fig|6666666.229912.peg.559 CDS AEJL02000023.1 3178 3579 1 + 402 LysR family regulatory protein CidR Murein hydrolase regulation and cell death
fig|6666666.229912.peg.560 CDS AEJL02000023.1 3725 3588 -2 - 138 hypothetical protein - none -
fig|6666666.229912.peg.561 CDS AEJL02000023.1 4062 3784 -3 - 279 hypothetical protein - none -
fig|6666666.229912.peg.562 CDS AEJL02000023.1 5748 4084 -3 - 1665 PTS system, fructose-specific IIB component (EC 2.7.1.69) / PTS system, fructose-specific IIC component (EC 2.7.1.69) Fructose utilization;
Fructose utilization
fig|6666666.229912.peg.563 CDS AEJL02000023.1 6694 5753 -1 - 942 1-phosphofructokinase (EC 2.7.1.56) Fructose utilization
fig|6666666.229912.peg.564 CDS AEJL02000023.1 8226 6697 -3 - 1530 Fructose-specific phosphocarrier protein HPr (EC 2.7.1.69) / PTS system, fructose-specific IIA component (EC 2.7.1.69) Fructose utilization;
Fructose utilization
fig|6666666.229912.peg.565 CDS AEJL02000023.1 8868 8338 -3 - 531 ATPases involved in chromosome partitioning - none -
fig|6666666.229912.peg.566 CDS AEJL02000023.1 9551 8967 -2 - 585 Molybdopterin-guanine dinucleotide biosynthesis protein MobA Molybdenum cofactor biosynthesis;
ar-431-EC Molybdopterin-guanine dinucleotide biosynthesis
fig|6666666.229912.peg.567 CDS AEJL02000023.1 9635 9901 2 + 267 Protein yihD - none -
fig|6666666.229912.peg.568 CDS AEJL02000023.1 9920 10537 2 + 618 Periplasmic thiol:disulfide interchange protein DsbA Biogenesis of c-type cytochromes;
Periplasmic disulfide interchange
fig|6666666.229912.peg.569 CDS AEJL02000023.1 10597 10926 1 + 330 Protein yifE - none -
fig|6666666.229912.peg.570 CDS AEJL02000023.1 10996 12093 1 + 1098 tRNA (uracil(54)-C5)-methyltransferase (EC 2.1.1.35) RNA methylation;
tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229912.peg.571 CDS AEJL02000023.1 12095 12853 2 + 759 rRNA small subunit methyltransferase J - none -
fig|6666666.229912.peg.572 CDS AEJL02000023.1 12945 13280 3 + 336 hypothetical protein - none -
fig|6666666.229912.peg.573 CDS AEJL02000023.1 13335 14708 3 + 1374 hypothetical protein - none -
fig|6666666.229912.peg.574 CDS AEJL02000023.1 14710 16029 1 + 1320 hypothetical protein - none -
fig|6666666.229912.peg.575 CDS AEJL02000023.1 16755 16982 3 + 228 hypothetical protein - none -
fig|6666666.229912.peg.576 CDS AEJL02000024.1 32 337 2 + 306 Diacylglycerol kinase (EC 2.7.1.107) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Riboflavin synthesis cluster
fig|6666666.229912.peg.577 CDS AEJL02000024.1 353 1012 2 + 660 Hydrolase, haloacid dehalogenase-like family - none -
fig|6666666.229912.peg.578 CDS AEJL02000024.1 1831 1031 -1 - 801 Orf2 - none -
fig|6666666.229912.peg.579 CDS AEJL02000024.1 5083 1985 -1 - 3099 RND multidrug efflux transporter; Acriflavin resistance protein Multidrug Resistance Efflux Pumps
fig|6666666.229912.peg.580 CDS AEJL02000024.1 6293 5097 -2 - 1197 Probable Co/Zn/Cd efflux system membrane fusion protein Cobalt-zinc-cadmium resistance
fig|6666666.229912.peg.581 CDS AEJL02000024.1 6885 6319 -3 - 567 Probable Co/Zn/Cd efflux system membrane fusion protein Cobalt-zinc-cadmium resistance
fig|6666666.229912.peg.582 CDS AEJL02000024.1 7919 7086 -2 - 834 Cell division protein - none -
fig|6666666.229912.peg.583 CDS AEJL02000024.1 10269 8029 -3 - 2241 Helicase PriA essential for oriC/DnaA-independent DNA replication Conserved gene cluster associated with Met-tRNA formyltransferase
fig|6666666.229912.peg.584 CDS AEJL02000024.1 10454 11317 2 + 864 Involved in lipopolysaccharide biosynthesis - none -
fig|6666666.229912.peg.585 CDS AEJL02000024.1 12328 11324 -1 - 1005 putative capsular polysaccharide synthesis protein - none -
fig|6666666.229912.peg.586 CDS AEJL02000024.1 13185 12337 -3 - 849 Lipooligosaccharide biosynthesis protein lex-1 (EC 2.-.-.-) - none -
fig|6666666.229912.peg.587 CDS AEJL02000024.1 13443 13655 3 + 213 LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-dependent Ribosome LSU bacterial;
Ribosome LSU bacterial
fig|6666666.229912.peg.588 CDS AEJL02000024.1 13718 14410 2 + 693 Beta-1,4-galactosyltransferase LOS core oligosaccharide biosynthesis
fig|6666666.229912.peg.589 CDS AEJL02000024.1 14411 15433 2 + 1023 COG0859: ADP-heptose:LPS heptosyltransferase - none -
fig|6666666.229912.peg.590 CDS AEJL02000024.1 15443 16495 2 + 1053 COG0859: ADP-heptose:LPS heptosyltransferase - none -
fig|6666666.229912.peg.591 CDS AEJL02000024.1 17355 16498 -3 - 858 Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) DNA Repair Base Excision
fig|6666666.229912.peg.592 CDS AEJL02000024.1 17565 17395 -3 - 171 LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-independent Ribosome LSU bacterial;
Ribosome LSU bacterial
fig|6666666.229912.peg.593 CDS AEJL02000024.1 17750 17577 -2 - 174 LSU ribosomal protein L28p Ribosome LSU bacterial
fig|6666666.229912.peg.594 CDS AEJL02000024.1 18659 18000 -2 - 660 DNA repair protein RadC DNA repair, bacterial
fig|6666666.229912.peg.595 CDS AEJL02000024.1 18862 18710 -1 - 153 hypothetical protein - none -
fig|6666666.229912.peg.596 CDS AEJL02000024.1 18837 20036 3 + 1200 Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) / Phosphopantothenoylcysteine synthetase (EC 6.3.2.5) Coenzyme A Biosynthesis;
Coenzyme A Biosynthesis
fig|6666666.229912.peg.597 CDS AEJL02000024.1 20105 20560 2 + 456 Deoxyuridine 5@1-triphosphate nucleotidohydrolase (EC 3.6.1.23) Housecleaning nucleoside triphosphate pyrophosphatases;
Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229912.peg.598 CDS AEJL02000024.1 20560 21159 1 + 600 Transcriptional regulator SlmA, TetR family - none -
fig|6666666.229912.peg.599 CDS AEJL02000024.1 21183 21401 3 + 219 FIG00696234: hypothetical protein - none -
fig|6666666.229912.peg.600 CDS AEJL02000024.1 21439 22083 1 + 645 Cyclic AMP receptor protein cAMP signaling in bacteria
fig|6666666.229912.peg.601 CDS AEJL02000024.1 23586 22216 -3 - 1371 Glutathione reductase (EC 1.8.1.7) Glutathione: Redox cycle
fig|6666666.229912.peg.602 CDS AEJL02000024.1 24526 23681 -1 - 846 Protein involved in catabolism of external DNA DNA processing cluster;
DNA uptake cluster
fig|6666666.229912.peg.603 CDS AEJL02000024.1 27188 24621 -2 - 2568 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) DNA uptake cluster;
Peptidoglycan Biosynthesis;
Type IV pilus
fig|6666666.229912.peg.604 CDS AEJL02000024.1 27322 28131 1 + 810 Type IV pilus biogenesis protein PilM; Competence protein A DNA uptake cluster;
Type IV pilus
fig|6666666.229912.peg.605 CDS AEJL02000024.1 28142 28660 2 + 519 Type IV pilus biogenesis protein PilN; Competence protein B DNA uptake cluster;
Type IV pilus
fig|6666666.229912.peg.606 CDS AEJL02000024.1 28657 29181 1 + 525 Competence protein C; Chromosome segregation ATPases DNA uptake cluster
fig|6666666.229912.peg.607 CDS AEJL02000024.1 29181 29573 3 + 393 Type IV pilus biogenesis protein PilQ; Competence protein D DNA uptake cluster;
Type IV pilus
fig|6666666.229912.peg.608 CDS AEJL02000024.1 29594 31003 2 + 1410 Type IV pilus biogenesis protein PilQ; Competence protein E DNA uptake cluster;
Type IV pilus
fig|6666666.229912.peg.609 CDS AEJL02000024.1 31217 31744 2 + 528 Shikimate kinase I (EC 2.7.1.71) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229912.peg.610 CDS AEJL02000024.1 31768 32856 1 + 1089 3-dehydroquinate synthase (EC 4.2.3.4) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate);
Type IV pilus
fig|6666666.229912.peg.611 CDS AEJL02000024.1 32859 33713 3 + 855 Methyl-directed repair DNA adenine methylase (EC 2.1.1.72) DNA repair, bacterial
fig|6666666.229912.peg.612 CDS AEJL02000024.1 34479 33952 -3 - 528 probable integral membrane protein NMA1777 - none -
fig|6666666.229912.peg.613 CDS AEJL02000024.1 34832 34530 -2 - 303 probable integral membrane protein NMA1777 - none -
fig|6666666.229912.peg.614 CDS AEJL02000024.1 35275 34832 -1 - 444 Transcriptional regulator, MarR family - none -
fig|6666666.229912.peg.615 CDS AEJL02000024.1 35423 36040 2 + 618 Membrane fusion protein of RND family multidrug efflux pump Multidrug Resistance Efflux Pumps
fig|6666666.229912.peg.616 CDS AEJL02000024.1 36010 36537 1 + 528 Membrane fusion protein of RND family multidrug efflux pump Multidrug Resistance Efflux Pumps
fig|6666666.229912.peg.617 CDS AEJL02000024.1 37121 36933 -2 - 189 hypothetical protein - none -
fig|6666666.229912.peg.618 CDS AEJL02000024.1 37288 39459 1 + 2172 Hypothetical SecA-related protein - none -
fig|6666666.229912.peg.619 CDS AEJL02000024.1 39673 40239 1 + 567 RND multidrug efflux transporter; Acriflavin resistance protein Multidrug Resistance Efflux Pumps
fig|6666666.229912.peg.620 CDS AEJL02000024.1 40914 40429 -3 - 486 Single-stranded DNA-binding protein DNA repair, bacterial;
DNA repair, bacterial RecFOR pathway
fig|6666666.229912.peg.621 CDS AEJL02000024.1 41084 43915 2 + 2832 Excinuclease ABC subunit A DNA repair, UvrABC system
fig|6666666.229912.peg.622 CDS AEJL02000025.1 15 395 3 + 381 hypothetical protein - none -
fig|6666666.229912.peg.623 CDS AEJL02000025.1 406 1038 1 + 633 hypothetical protein - none -
fig|6666666.229912.peg.624 CDS AEJL02000025.1 1020 3311 3 + 2292 hypothetical protein - none -
fig|6666666.229912.peg.625 CDS AEJL02000025.1 3332 4507 2 + 1176 hypothetical protein - none -
fig|6666666.229912.peg.626 CDS AEJL02000025.1 6708 4894 -3 - 1815 5@1-nucleotidase (EC 3.1.3.5); NAD pyrophosphatase, periplasmic (EC 3.6.1.22) Purine conversions;
pyrimidine conversions
fig|6666666.229912.peg.627 CDS AEJL02000025.1 7511 6735 -2 - 777 Protein HI0205 precursor - none -
fig|6666666.229912.peg.628 CDS AEJL02000025.1 7768 7649 -1 - 120 hypothetical protein - none -
fig|6666666.229912.peg.629 CDS AEJL02000025.1 7790 8716 2 + 927 ADP-L-glycero-D-manno-heptose-6-epimerase (EC 5.1.3.20) LOS core oligosaccharide biosynthesis
fig|6666666.229912.peg.630 CDS AEJL02000025.1 8886 10013 3 + 1128 Fic family protein - none -
fig|6666666.229912.peg.631 CDS AEJL02000025.1 10033 11076 1 + 1044 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) LOS core oligosaccharide biosynthesis
fig|6666666.229912.peg.632 CDS AEJL02000025.1 11194 13089 1 + 1896 Glutathionylspermidine synthase (EC 6.3.1.8) / Glutathionylspermidine amidohydrolase (EC 3.5.1.78) Glutathionylspermidine and Trypanothione;
Glutathionylspermidine and Trypanothione
fig|6666666.229912.peg.633 CDS AEJL02000025.1 13818 13183 -3 - 636 Cytochrome c-type protein NapC - none -
fig|6666666.229912.peg.634 CDS AEJL02000025.1 14281 13832 -1 - 450 Nitrate reductase cytochrome c550-type subunit - none -
fig|6666666.229912.peg.635 CDS AEJL02000025.1 15200 14319 -2 - 882 Polyferredoxin NapH (periplasmic nitrate reductase) - none -
fig|6666666.229912.peg.636 CDS AEJL02000025.1 16039 15200 -1 - 840 Ferredoxin-type protein NapG (periplasmic nitrate reductase) - none -
fig|6666666.229912.peg.637 CDS AEJL02000025.1 18573 16087 -3 - 2487 Periplasmic nitrate reductase precursor (EC 1.7.99.4) - none -
fig|6666666.229912.peg.638 CDS AEJL02000025.1 18891 18607 -3 - 285 Periplasmic nitrate reductase component NapD - none -
fig|6666666.229912.peg.639 CDS AEJL02000025.1 19121 18957 -2 - 165 hypothetical protein - none -
fig|6666666.229912.peg.640 CDS AEJL02000025.1 19167 20870 3 + 1704 Nitrate/nitrite sensor protein (EC 2.7.3.-) - none -
fig|6666666.229912.peg.641 CDS AEJL02000025.1 20885 21910 2 + 1026 UDP-N-acetylenolpyruvoylglucosamine reductase (EC 1.1.1.158) Peptidoglycan Biosynthesis;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229912.peg.642 CDS AEJL02000025.1 21926 22240 2 + 315 Uncharacterized protein conserved in bacteria - none -
fig|6666666.229912.peg.643 CDS AEJL02000025.1 22425 23273 3 + 849 RNA polymerase sigma factor RpoH Heat shock dnaK gene cluster extended;
Transcription initiation, bacterial sigma factors
fig|6666666.229912.peg.644 CDS AEJL02000025.1 23975 23340 -2 - 636 DNA transformation protein TfoX CBSS-83333.1.peg.946;
Orphan regulatory proteins
fig|6666666.229912.peg.645 CDS AEJL02000025.1 24844 24563 -1 - 282 VgrG-3 protein - none -
fig|6666666.229912.peg.646 CDS AEJL02000025.1 26818 25529 -1 - 1290 Xylulose kinase (EC 2.7.1.17) Xylose utilization
fig|6666666.229912.peg.647 CDS AEJL02000026.1 3377 1962 -2 - 1416 O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229912.peg.648 CDS AEJL02000026.1 4000 3383 -1 - 618 SeqA protein, negative modulator of initiation of replication - none -
fig|6666666.229912.peg.649 CDS AEJL02000026.1 4087 4887 1 + 801 Esterase ybfF (EC 3.1.-.-) - none -
fig|6666666.229912.peg.650 CDS AEJL02000026.1 5307 5831 3 + 525 Flavodoxin 1 Flavodoxin
fig|6666666.229912.peg.651 CDS AEJL02000026.1 5850 6290 3 + 441 Ferric uptake regulation protein FUR Bacterial RNA-metabolizing Zn-dependent hydrolases;
Oxidative stress
fig|6666666.229912.peg.652 CDS AEJL02000026.1 6458 9121 2 + 2664 DNA gyrase subunit A (EC 5.99.1.3) Cell Division Subsystem including YidCD;
DNA gyrase subunits;
DNA replication cluster 1;
DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.229912.peg.653 CDS AEJL02000026.1 9189 9539 3 + 351 FIG00782386: hypothetical protein - none -
fig|6666666.229912.peg.654 CDS AEJL02000026.1 9890 9573 -2 - 318 Translation initiation factor SUI1-related protein Translation initiation factors bacterial
fig|6666666.229912.peg.655 CDS AEJL02000026.1 10588 9896 -1 - 693 Orotidine 5@1-phosphate decarboxylase (EC 4.1.1.23) De Novo Pyrimidine Synthesis;
Riboflavin synthesis cluster
fig|6666666.229912.peg.656 CDS AEJL02000026.1 11808 10618 -3 - 1191 Heat shock (predicted periplasmic) protein YciM, precursor Osmotic stress cluster
fig|6666666.229912.peg.657 CDS AEJL02000026.1 12104 11808 -2 - 297 Inner membrane protein yciS - none -
fig|6666666.229912.peg.658 CDS AEJL02000026.1 12490 12203 -1 - 288 Integration host factor beta subunit DNA structural proteins, bacterial
fig|6666666.229912.peg.659 CDS AEJL02000026.1 14198 12552 -2 - 1647 SSU ribosomal protein S1p Cell division-ribosomal stress proteins cluster
fig|6666666.229912.peg.660 CDS AEJL02000026.1 14973 14296 -3 - 678 Cytidylate kinase (EC 2.7.4.25) pyrimidine conversions
fig|6666666.229912.peg.661 CDS AEJL02000026.1 15859 14966 -1 - 894 Membrane protein LAPB - none -
fig|6666666.229912.peg.662 CDS AEJL02000026.1 16152 18518 3 + 2367 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229912.peg.663 CDS AEJL02000026.1 18596 21370 2 + 2775 Probable zinc protease pqqL (EC 3.4.99.-) - none -
fig|6666666.229912.peg.664 CDS AEJL02000026.1 21769 21437 -1 - 333 Branched-chain amino acid transport protein azlD - none -
fig|6666666.229912.peg.665 CDS AEJL02000026.1 22498 21770 -1 - 729 Branched-chain amino acid transport protein AzlC - none -
fig|6666666.229912.peg.666 CDS AEJL02000026.1 23435 22503 -2 - 933 Transcriptional activator MetR LysR-family proteins in Escherichia coli;
LysR-family proteins in Salmonella enterica Typhimurium;
Methionine Biosynthesis
fig|6666666.229912.peg.667 CDS AEJL02000026.1 23726 26002 2 + 2277 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) Methionine Biosynthesis
fig|6666666.229912.peg.668 CDS AEJL02000026.1 26992 26699 -1 - 294 CRISPR-associated protein Cas2 CRISPRs
fig|6666666.229912.peg.669 CDS AEJL02000026.1 28009 26996 -1 - 1014 CRISPR-associated protein Cas1 CRISPRs
fig|6666666.229912.peg.670 CDS AEJL02000026.1 29901 28057 -3 - 1845 hypothetical protein - none -
fig|6666666.229912.peg.671 CDS AEJL02000026.1 30611 29964 -2 - 648 CRISPR-associated RecB family exonuclease Cas4 / CRISPR-associated protein Cas1 CRISPRs
fig|6666666.229912.peg.672 CDS AEJL02000026.1 31680 30787 -3 - 894 CRISPR-associated protein, Csd2 family CRISPRs
fig|6666666.229912.peg.673 CDS AEJL02000026.1 33735 31702 -3 - 2034 CRISPR-associated protein, Csd1 family CRISPRs
fig|6666666.229912.peg.674 CDS AEJL02000026.1 34511 33732 -2 - 780 CRISPR-associated protein, Cas5d family CRISPRs
fig|6666666.229912.peg.675 CDS AEJL02000026.1 36985 34520 -1 - 2466 CRISPR-associated helicase Cas3 CRISPRs
fig|6666666.229912.peg.676 CDS AEJL02000026.1 37185 40118 3 + 2934 Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42) Ammonia assimilation;
CBSS-316057.3.peg.3521
fig|6666666.229912.peg.677 CDS AEJL02000026.1 40453 40154 -1 - 300 Putative transcriptional regulator - none -
fig|6666666.229912.peg.678 CDS AEJL02000026.1 40800 40450 -3 - 351 YPPCP.09C homologue - none -
fig|6666666.229912.peg.679 CDS AEJL02000026.1 42570 40987 -3 - 1584 Peptide chain release factor 3 Translation termination factors bacterial
fig|6666666.229912.peg.680 CDS AEJL02000026.1 42640 42756 1 + 117 hypothetical protein - none -
fig|6666666.229912.peg.681 CDS AEJL02000026.1 42927 43754 3 + 828 Nucleoside-diphosphate-sugar epimerases - none -
fig|6666666.229912.peg.682 CDS AEJL02000026.1 43842 45179 3 + 1338 Argininosuccinate synthase (EC 6.3.4.5) - none -
fig|6666666.229912.peg.683 CDS AEJL02000026.1 45370 45615 1 + 246 FIG00696862: hypothetical protein - none -
fig|6666666.229912.peg.684 CDS AEJL02000026.1 45848 47617 2 + 1770 Gamma-glutamyltranspeptidase (EC 2.3.2.2) Glutathione: Biosynthesis and gamma-glutamyl cycle
fig|6666666.229912.peg.685 CDS AEJL02000026.1 48684 47743 -3 - 942 Sensory histidine kinase QseC Orphan regulatory proteins
fig|6666666.229912.peg.686 CDS AEJL02000026.1 49137 48709 -3 - 429 Sensory histidine kinase QseC Orphan regulatory proteins
fig|6666666.229912.peg.687 CDS AEJL02000026.1 49552 49106 -1 - 447 Two-component system response regulator QseB Orphan regulatory proteins
fig|6666666.229912.peg.688 CDS AEJL02000026.1 49766 49521 -2 - 246 Two-component system response regulator QseB Orphan regulatory proteins
fig|6666666.229912.peg.689 CDS AEJL02000026.1 50319 49921 -3 - 399 Protein co-occuring with molybdenum cofactor biosynthesis protein B Molybdenum cofactor biosynthesis
fig|6666666.229912.peg.690 CDS AEJL02000026.1 50691 51608 3 + 918 formate dehydrogenase formation protein FdhE Formate hydrogenase
fig|6666666.229912.peg.691 CDS AEJL02000027.1 74 223 2 + 150 Phosphoglycerate transport regulatory protein PgtC Phosphoglycerate transport system
fig|6666666.229912.peg.692 CDS AEJL02000027.1 220 1560 1 + 1341 Phosphoglycerate transport system sensor protein PgtB (EC 2.7.3.-) Phosphoglycerate transport system
fig|6666666.229912.peg.693 CDS AEJL02000027.1 1517 2113 2 + 597 Phosphoglycerate transport system sensor protein PgtB (EC 2.7.3.-) Phosphoglycerate transport system
fig|6666666.229912.peg.694 CDS AEJL02000027.1 2106 3356 3 + 1251 Phosphoglycerate transport system transcriptional regulatory protein PgtA Phosphoglycerate transport system
fig|6666666.229912.peg.695 CDS AEJL02000027.1 4247 3408 -2 - 840 NADPH dependent preQ0 reductase (EC 1.7.1.13) - none -
fig|6666666.229912.peg.696 CDS AEJL02000027.1 5038 4256 -1 - 783 Zn-ribbon-containing, possibly nucleic-acid-binding protein - none -
fig|6666666.229912.peg.697 CDS AEJL02000028.1 300 37 -3 - 264 Phage tail fibers Phage tail fiber proteins
fig|6666666.229912.peg.698 CDS AEJL02000028.1 500 1195 2 + 696 hypothetical protein - none -
fig|6666666.229912.peg.699 CDS AEJL02000028.1 1330 2394 1 + 1065 Vitamin B12 ABC transporter, permease component BtuC - none -
fig|6666666.229912.peg.700 CDS AEJL02000028.1 2394 3188 3 + 795 Glutathione synthetase (EC 6.3.2.3) Cluster containing Glutathione synthetase;
Glutathione: Biosynthesis and gamma-glutamyl cycle;
Heat shock dnaK gene cluster extended
fig|6666666.229912.peg.701 CDS AEJL02000028.1 3201 4235 3 + 1035 FIG00362752: hypothetical protein - none -
fig|6666666.229912.peg.702 CDS AEJL02000028.1 4318 4527 1 + 210 Molybdate-binding domain of ModE Molybdenum cofactor biosynthesis
fig|6666666.229912.peg.703 CDS AEJL02000028.1 6743 4647 -2 - 2097 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins Ton and Tol transport systems
fig|6666666.229912.peg.704 CDS AEJL02000028.1 7042 6740 -1 - 303 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins Ton and Tol transport systems
fig|6666666.229912.peg.705 CDS AEJL02000028.1 7886 7137 -2 - 750 ABC transporter ATP-binding protein - none -
fig|6666666.229912.peg.706 CDS AEJL02000028.1 8896 7883 -1 - 1014 Vitamin B12 ABC transporter, permease component BtuC - none -
fig|6666666.229912.peg.707 CDS AEJL02000028.1 9897 8896 -3 - 1002 ABC transporter, solute-binding protein - none -
fig|6666666.229912.peg.708 CDS AEJL02000028.1 10108 10605 1 + 498 FIG00697418: hypothetical protein - none -
fig|6666666.229912.peg.709 CDS AEJL02000028.1 10607 12577 2 + 1971 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins Ton and Tol transport systems
fig|6666666.229912.peg.710 CDS AEJL02000028.1 13083 12667 -3 - 417 putative membrane protein - none -
fig|6666666.229912.peg.711 CDS AEJL02000028.1 13224 14189 3 + 966 tRNA(Cytosine32)-2-thiocytidine synthetase CBSS-326442.4.peg.1852;
tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229912.peg.712 CDS AEJL02000028.1 14206 14706 1 + 501 Micrococcal nuclease (thermonuclease) homologs - none -
fig|6666666.229912.peg.713 CDS AEJL02000028.1 14712 15911 3 + 1200 Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA Alanine biosynthesis;
mnm5U34 biosynthesis bacteria;
tRNA modification Archaea
fig|6666666.229912.peg.714 CDS AEJL02000028.1 15908 16288 2 + 381 Cysteine desulfurase CsdA-CsdE, sulfur acceptor protein CsdE - none -
fig|6666666.229912.peg.715 CDS AEJL02000028.1 17760 16330 -3 - 1431 ADP-heptose synthase (EC 2.7.-.-) / D-glycero-beta-D-manno-heptose 7-phosphate kinase LOS core oligosaccharide biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.229912.peg.716 CDS AEJL02000028.1 17874 18809 3 + 936 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) KDO2-Lipid A biosynthesis
fig|6666666.229912.peg.717 CDS AEJL02000028.1 19430 18867 -2 - 564 Putative oxidoreductase component of anaerobic dehydrogenases; Functional role page for Chaperone protein TorD - none -
fig|6666666.229912.peg.718 CDS AEJL02000028.1 20041 19430 -1 - 612 NAD(P)H oxidoreductase YRKL (EC 1.6.99.-) @ Putative NADPH-quinone reductase (modulator of drug activity B) @ Flavodoxin 2 Flavodoxin;
Flavodoxin
fig|6666666.229912.peg.719 CDS AEJL02000028.1 20496 20050 -3 - 447 Putative activity regulator of membrane protease YbbK - none -
fig|6666666.229912.peg.720 CDS AEJL02000028.1 21446 20520 -2 - 927 Putative stomatin/prohibitin-family membrane protease subunit YbbK - none -
fig|6666666.229912.peg.721 CDS AEJL02000028.1 22789 21968 -1 - 822 probable glucanotransferase (endo alpha-1,4 polygalactosaminidase related protein) - none -
fig|6666666.229912.peg.722 CDS AEJL02000028.1 23789 23562 -2 - 228 hypothetical protein - none -
fig|6666666.229912.peg.723 CDS AEJL02000028.1 24591 25973 3 + 1383 Cytochrome c551 peroxidase (EC 1.11.1.5) Protection from Reactive Oxygen Species
fig|6666666.229912.peg.724 CDS AEJL02000028.1 27218 25980 -2 - 1239 Ribonuclease D (EC 3.1.26.3) tRNA processing
fig|6666666.229912.peg.725 CDS AEJL02000028.1 28367 27285 -2 - 1083 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) Biotin biosynthesis;
Biotin synthesis cluster
fig|6666666.229912.peg.726 CDS AEJL02000028.1 28973 28368 -2 - 606 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) Biotin biosynthesis;
Biotin synthesis cluster
fig|6666666.229912.peg.727 CDS AEJL02000028.1 29573 29016 -2 - 558 Starvation lipoprotein Slp paralog Carbon Starvation
fig|6666666.229912.peg.728 CDS AEJL02000028.1 30327 29605 -3 - 723 TsaB protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Ribosome biogenesis bacterial;
YgjD and YeaZ;
YjeE;
YrdC-YciO-Sua5 protein family
fig|6666666.229912.peg.729 CDS AEJL02000028.1 32267 30330 -2 - 1938 DinG family ATP-dependent helicase YoaA DNA repair, bacterial DinG and relatives
fig|6666666.229912.peg.730 CDS AEJL02000028.1 32343 33161 3 + 819 Aldose 1-epimerase - none -
fig|6666666.229912.peg.731 CDS AEJL02000028.1 33444 33313 -3 - 132 hypothetical protein - none -
fig|6666666.229912.peg.732 CDS AEJL02000028.1 34417 33515 -1 - 903 Maltose operon periplasmic protein MalM Maltose and Maltodextrin Utilization
fig|6666666.229912.peg.733 CDS AEJL02000028.1 35786 34503 -2 - 1284 Maltoporin (maltose/maltodextrin high-affinity receptor, phage lambda receptor protein) Maltose and Maltodextrin Utilization
fig|6666666.229912.peg.734 CDS AEJL02000028.1 36981 35863 -3 - 1119 Maltose/maltodextrin transport ATP-binding protein MalK (EC 3.6.3.19) Maltose and Maltodextrin Utilization
fig|6666666.229912.peg.735 CDS AEJL02000028.1 37012 37125 1 + 114 hypothetical protein - none -
fig|6666666.229912.peg.736 CDS AEJL02000028.1 37437 38627 3 + 1191 Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein MalE Alpha-Amylase locus in Streptocococcus;
Bacterial Chemotaxis;
Maltose and Maltodextrin Utilization
fig|6666666.229912.peg.737 CDS AEJL02000028.1 38596 38727 1 + 132 hypothetical protein - none -
fig|6666666.229912.peg.738 CDS AEJL02000028.1 38751 40289 3 + 1539 Maltose/maltodextrin ABC transporter, permease protein MalF Maltose and Maltodextrin Utilization
fig|6666666.229912.peg.739 CDS AEJL02000028.1 40311 41201 3 + 891 Maltose/maltodextrin ABC transporter, permease protein MalG Maltose and Maltodextrin Utilization
fig|6666666.229912.peg.740 CDS AEJL02000028.1 41295 43346 3 + 2052 Periplasmic alpha-amylase (EC 3.2.1.1) Maltose and Maltodextrin Utilization
fig|6666666.229912.peg.741 CDS AEJL02000028.1 43331 43447 2 + 117 hypothetical protein - none -
fig|6666666.229912.peg.742 CDS AEJL02000028.1 44446 43406 -1 - 1041 Sulfate and thiosulfate import ATP-binding protein CysA (EC 3.6.3.25) Cysteine Biosynthesis;
Uptake of selenate and selenite
fig|6666666.229912.peg.743 CDS AEJL02000028.1 46460 44430 -2 - 2031 Ferric iron ABC transporter, permease protein Iron acquisition in Streptococcus
fig|6666666.229912.peg.744 CDS AEJL02000028.1 47006 46512 -2 - 495 Ferric iron ABC transporter, iron-binding protein Iron acquisition in Streptococcus
fig|6666666.229912.peg.745 CDS AEJL02000029.1 293 1246 2 + 954 Transaldolase (EC 2.2.1.2) Fructose utilization;
Pentose phosphate pathway
fig|6666666.229912.peg.746 CDS AEJL02000029.1 1265 3376 2 + 2112 Transketolase (EC 2.2.1.1) Pentose phosphate pathway
fig|6666666.229912.peg.747 CDS AEJL02000029.1 3834 3445 -3 - 390 Endoribonuclease L-PSP - none -
fig|6666666.229912.peg.748 CDS AEJL02000029.1 4365 3907 -3 - 459 Regulatory protein RecX DNA repair system including RecA, MutS and a hypothetical protein;
RecA and RecX
fig|6666666.229912.peg.749 CDS AEJL02000029.1 5505 4447 -3 - 1059 RecA protein DNA repair, bacterial;
DNA repair, bacterial RecFOR pathway;
DNA repair system including RecA, MutS and a hypothetical protein;
RecA and RecX
fig|6666666.229912.peg.750 CDS AEJL02000029.1 7578 5653 -3 - 1926 Glutathione-regulated potassium-efflux system ATP-binding protein Potassium homeostasis
fig|6666666.229912.peg.751 CDS AEJL02000029.1 7659 8276 3 + 618 Multiple antibiotic resistance protein marC - none -
fig|6666666.229912.peg.752 CDS AEJL02000029.1 8463 11114 3 + 2652 Putative uncharacterized protein ydbH - none -
fig|6666666.229912.peg.753 CDS AEJL02000029.1 11111 11338 2 + 228 FIG00354920: hypothetical protein - none -
fig|6666666.229912.peg.754 CDS AEJL02000029.1 12138 12536 3 + 399 Integrase - none -
fig|6666666.229912.peg.755 CDS AEJL02000029.1 12948 12799 -3 - 150 hypothetical protein - none -
fig|6666666.229912.peg.756 CDS AEJL02000029.1 14246 13074 -2 - 1173 FOG: TPR repeat, SEL1 subfamily - none -
fig|6666666.229912.peg.757 CDS AEJL02000029.1 14611 14318 -1 - 294 miscellaneous; hypothetical/partial homology - none -
fig|6666666.229912.peg.758 CDS AEJL02000030.1 2813 1992 -2 - 822 Formate efflux transporter (TC 2.A.44 family) Fermentations: Mixed acid
fig|6666666.229912.peg.759 CDS AEJL02000030.1 3156 3506 3 + 351 Bis(5@1-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17) pyrimidine conversions
fig|6666666.229912.peg.760 CDS AEJL02000030.1 3507 3860 3 + 354 Predicted periplasmic lipoprotein - none -
fig|6666666.229912.peg.761 CDS AEJL02000030.1 3862 4908 1 + 1047 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) Murein Hydrolases;
Recycling of Peptidoglycan Amino Sugars
fig|6666666.229912.peg.762 CDS AEJL02000030.1 4910 5842 2 + 933 23S rRNA (Uracil-5-) -methyltransferase rumB (EC 2.1.1.-) RNA methylation
fig|6666666.229912.peg.763 CDS AEJL02000030.1 5926 6087 1 + 162 23S rRNA (Uracil-5-) -methyltransferase rumB (EC 2.1.1.-) RNA methylation
fig|6666666.229912.peg.764 CDS AEJL02000030.1 7152 6187 -3 - 966 6-phosphofructokinase (EC 2.7.1.11) Glycolysis and Gluconeogenesis
fig|6666666.229912.peg.765 CDS AEJL02000030.1 8134 7214 -1 - 921 Cobalt-zinc-cadmium resistance protein Cobalt-zinc-cadmium resistance
fig|6666666.229912.peg.766 CDS AEJL02000030.1 8700 8134 -3 - 567 FIG00696199: hypothetical protein - none -
fig|6666666.229912.peg.767 CDS AEJL02000030.1 9481 8702 -1 - 780 UPF0246 protein YaaA - none -
fig|6666666.229912.peg.768 CDS AEJL02000030.1 10171 9503 -1 - 669 Uracil-DNA glycosylase, family 1 DNA Repair Base Excision;
Uracil-DNA glycosylase
fig|6666666.229912.peg.769 CDS AEJL02000030.1 10457 10840 2 + 384 Pyruvate formate-lyase (EC 2.3.1.54) Butanol Biosynthesis;
Fermentations: Mixed acid
fig|6666666.229912.peg.770 CDS AEJL02000030.1 11004 12800 3 + 1797 Translation elongation factor LepA Heat shock dnaK gene cluster extended;
Translation elongation factors bacterial;
Universal GTPases
fig|6666666.229912.peg.771 CDS AEJL02000030.1 12811 13833 1 + 1023 Signal peptidase I (EC 3.4.21.89) CBSS-176299.4.peg.1292;
Signal peptidase
fig|6666666.229912.peg.772 CDS AEJL02000030.1 13840 14520 1 + 681 Ribonuclease III (EC 3.1.26.3) CBSS-176299.4.peg.1292;
RNA processing and degradation, bacterial
fig|6666666.229912.peg.773 CDS AEJL02000030.1 14517 15425 3 + 909 GTP-binding protein Era Bacterial Cell Division;
CBSS-176299.4.peg.1292;
Glycyl-tRNA synthetase containing cluster;
Universal GTPases;
tRNA modification Archaea
fig|6666666.229912.peg.774 CDS AEJL02000030.1 16884 15529 -3 - 1356 GTPase and tRNA-U34 5-formylation enzyme TrmE Cell Division Subsystem including YidCD;
RNA modification and chromosome partitioning cluster;
RNA modification cluster;
Universal GTPases;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229912.peg.775 CDS AEJL02000030.1 18623 17013 -2 - 1611 Inner membrane protein translocase component YidC, long form CTP synthase (EC 6.3.4.2) cluster;
Cell Division Subsystem including YidCD;
RNA modification cluster
fig|6666666.229912.peg.776 CDS AEJL02000030.1 18907 18644 -1 - 264 Protein YidD Cell Division Subsystem including YidCD;
RNA modification cluster
fig|6666666.229912.peg.777 CDS AEJL02000030.1 19197 18862 -3 - 336 Ribonuclease P protein component (EC 3.1.26.5) Cell Division Subsystem including YidCD;
RNA modification cluster;
tRNA processing
fig|6666666.229912.peg.778 CDS AEJL02000030.1 19377 19243 -3 - 135 LSU ribosomal protein L34p Cell Division Subsystem including YidCD;
RNA modification cluster;
Ribosome LSU bacterial
fig|6666666.229912.peg.779 CDS AEJL02000030.1 19709 19572 -2 - 138 hypothetical protein - none -
fig|6666666.229912.peg.780 CDS AEJL02000030.1 19795 21156 1 + 1362 Chromosomal replication initiator protein DnaA Cell Division Subsystem including YidCD;
DNA replication cluster 1
fig|6666666.229912.peg.781 CDS AEJL02000030.1 21167 22267 2 + 1101 DNA polymerase III beta subunit (EC 2.7.7.7) Cell Division Subsystem including YidCD;
DNA replication cluster 1
fig|6666666.229912.peg.782 CDS AEJL02000030.1 22271 23347 2 + 1077 DNA recombination and repair protein RecF Cell Division Subsystem including YidCD;
DNA repair, bacterial RecFOR pathway;
DNA replication cluster 1
fig|6666666.229912.peg.783 CDS AEJL02000030.1 24149 23394 -2 - 756 Ubiquinone/menaquinone biosynthesis methyltransferase UbiE (EC 2.1.1.-) Menaquinone and Phylloquinone Biosynthesis;
Ubiquinone Biosynthesis
fig|6666666.229912.peg.784 CDS AEJL02000030.1 24337 24912 1 + 576 Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1) Oxidative stress;
Protection from Reactive Oxygen Species
fig|6666666.229912.peg.785 CDS AEJL02000030.1 26266 25070 -1 - 1197 NAD(FAD)-utilizing dehydrogenases - none -
fig|6666666.229912.peg.786 CDS AEJL02000030.1 27312 26263 -3 - 1050 Cytochrome c-type heme lyase subunit nrfF, nitrite reductase complex assembly - none -
fig|6666666.229912.peg.787 CDS AEJL02000030.1 27839 27309 -2 - 531 Putative thiol:disulfide oxidoreductase, nitrite reductase complex assembly - none -
fig|6666666.229912.peg.788 CDS AEJL02000030.1 29742 27832 -3 - 1911 Cytochrome c-type heme lyase subunit nrfE, nitrite reductase complex assembly - none -
fig|6666666.229912.peg.789 CDS AEJL02000030.1 29881 30099 1 + 219 hypothetical protein - none -
fig|6666666.229912.peg.790 CDS AEJL02000030.1 31296 30331 -3 - 966 NrfD protein - none -
fig|6666666.229912.peg.791 CDS AEJL02000030.1 31970 31293 -2 - 678 NrfC protein - none -
fig|6666666.229912.peg.792 CDS AEJL02000030.1 32632 31967 -1 - 666 Cytochrome c-type protein NrfB precursor - none -
fig|6666666.229912.peg.793 CDS AEJL02000030.1 34229 32706 -2 - 1524 Cytochrome c552 precursor (EC 1.7.2.2) Soluble cytochromes and functionally related electron carriers
fig|6666666.229912.peg.794 CDS AEJL02000030.1 35096 34806 -2 - 291 hypothetical protein - none -
fig|6666666.229912.peg.795 CDS AEJL02000030.1 35740 35114 -1 - 627 Parvulin-like peptidyl-prolyl isomerase - none -
fig|6666666.229912.peg.796 CDS AEJL02000030.1 36795 35872 -3 - 924 Cytochrome c heme lyase subunit CcmH Biogenesis of c-type cytochromes;
Copper homeostasis
fig|6666666.229912.peg.797 CDS AEJL02000030.1 37346 36795 -2 - 552 Cytochrome c heme lyase subunit CcmL Biogenesis of c-type cytochromes
fig|6666666.229912.peg.798 CDS AEJL02000030.1 37891 37346 -1 - 546 Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase Biogenesis of c-type cytochromes;
Periplasmic disulfide interchange
fig|6666666.229912.peg.799 CDS AEJL02000030.1 39878 37920 -2 - 1959 Cytochrome c heme lyase subunit CcmF Biogenesis of c-type cytochromes;
Copper homeostasis
fig|6666666.229912.peg.800 CDS AEJL02000030.1 40396 39878 -1 - 519 Cytochrome c-type biogenesis protein CcmE, heme chaperone Biogenesis of c-type cytochromes
fig|6666666.229912.peg.801 CDS AEJL02000030.1 40566 40393 -3 - 174 Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE Biogenesis of c-type cytochromes
fig|6666666.229912.peg.802 CDS AEJL02000030.1 41273 40617 -2 - 657 Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE Biogenesis of c-type cytochromes
fig|6666666.229912.peg.803 CDS AEJL02000032.1 594 4 -3 - 591 Aminodeoxychorismate lyase (EC 4.1.3.38) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Folate Biosynthesis;
Tryptophan synthesis
fig|6666666.229912.peg.804 CDS AEJL02000032.1 1571 597 -2 - 975 Para-aminobenzoate synthase, aminase component (EC 2.6.1.85) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Folate Biosynthesis;
Tryptophan synthesis
fig|6666666.229912.peg.805 CDS AEJL02000032.1 1674 2240 3 + 567 Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Folate Biosynthesis;
Tryptophan synthesis
fig|6666666.229912.peg.806 CDS AEJL02000032.1 2396 3340 2 + 945 Hydroxypyruvate reductase (EC 1.1.1.81) Glycerate metabolism;
Glycolate, glyoxylate interconversions
fig|6666666.229912.peg.807 CDS AEJL02000032.1 3558 3836 3 + 279 Ethidium bromide-methyl viologen resistance protein EmrE - none -
fig|6666666.229912.peg.808 CDS AEJL02000032.1 4979 4104 -2 - 876 Ribulosamine/erythrulosamine 3-kinase potentially involved in protein deglycation Protein deglycation
fig|6666666.229912.peg.809 CDS AEJL02000032.1 5219 7150 2 + 1932 Threonyl-tRNA synthetase (EC 6.1.1.3) tRNA aminoacylation, Thr
fig|6666666.229912.peg.810 CDS AEJL02000033.1 285 431 3 + 147 hypothetical protein - none -
fig|6666666.229912.peg.811 CDS AEJL02000034.1 1638 403 -3 - 1236 Na(+)-translocating NADH-quinone reductase subunit B (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229912.peg.812 CDS AEJL02000034.1 2981 1641 -2 - 1341 Na(+)-translocating NADH-quinone reductase subunit A (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229912.peg.813 CDS AEJL02000034.1 3173 3006 -2 - 168 hypothetical protein - none -
fig|6666666.229912.peg.814 CDS AEJL02000034.1 3327 3211 -3 - 117 hypothetical protein - none -
fig|6666666.229912.peg.815 CDS AEJL02000034.1 3648 3337 -3 - 312 Cell division protein BolA Bacterial Cell Division;
CBSS-339671.5.peg.589
fig|6666666.229912.peg.816 CDS AEJL02000034.1 3752 4345 2 + 594 Hypothetical lipoprotein YajG precursor CBSS-339671.5.peg.589
fig|6666666.229912.peg.817 CDS AEJL02000034.1 4451 4326 -2 - 126 hypothetical protein - none -
fig|6666666.229912.peg.818 CDS AEJL02000034.1 5925 4846 -3 - 1080 Membrane-bound lytic murein transglycosylase C precursor (EC 3.2.1.-) Murein Hydrolases
fig|6666666.229912.peg.819 CDS AEJL02000034.1 6206 5928 -2 - 279 FIG001341: Probable Fe(2+)-trafficking protein YggX Heat shock dnaK gene cluster extended
fig|6666666.229912.peg.820 CDS AEJL02000034.1 7443 6184 -3 - 1260 A/G-specific adenine glycosylase (EC 3.2.2.-) DNA repair, bacterial
fig|6666666.229912.peg.821 CDS AEJL02000034.1 7541 8308 2 + 768 tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33) CBSS-83333.1.peg.2911;
RNA methylation;
tRNA modification Bacteria
fig|6666666.229912.peg.822 CDS AEJL02000034.1 8338 8679 1 + 342 FIG002060: uncharacterized protein YggL CBSS-83333.1.peg.2911
fig|6666666.229912.peg.823 CDS AEJL02000034.1 8898 9896 3 + 999 Ferric iron ABC transporter, iron-binding protein Iron acquisition in Streptococcus
fig|6666666.229912.peg.824 CDS AEJL02000034.1 9977 11497 2 + 1521 Ferric iron ABC transporter, permease protein Iron acquisition in Streptococcus
fig|6666666.229912.peg.825 CDS AEJL02000034.1 11513 12571 2 + 1059 Ferric iron ABC transporter, ATP-binding protein Iron acquisition in Streptococcus
fig|6666666.229912.peg.826 CDS AEJL02000034.1 13560 12592 -3 - 969 tRNA-dihydrouridine synthase C (EC 1.-.-.-) Murein hydrolase regulation and cell death;
tRNA modification Bacteria
fig|6666666.229912.peg.827 CDS AEJL02000034.1 14439 13564 -3 - 876 DnaJ-like protein DjlA - none -
fig|6666666.229912.peg.828 CDS AEJL02000034.1 15165 14521 -3 - 645 Orotate phosphoribosyltransferase (EC 2.4.2.10) De Novo Pyrimidine Synthesis
fig|6666666.229912.peg.829 CDS AEJL02000034.1 15891 15175 -3 - 717 Ribonuclease PH (EC 2.7.7.56) Heat shock dnaK gene cluster extended;
tRNA processing
fig|6666666.229912.peg.830 CDS AEJL02000034.1 16009 16872 1 + 864 Protein YicC CBSS-323097.3.peg.2594
fig|6666666.229912.peg.831 CDS AEJL02000034.1 16900 17787 1 + 888 Folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress - none -
fig|6666666.229912.peg.832 CDS AEJL02000034.1 17906 18295 2 + 390 Patatin-like phospholipase - none -
fig|6666666.229912.peg.833 CDS AEJL02000034.1 18370 19092 1 + 723 SSU ribosomal protein S2p (SAe) CBSS-312309.3.peg.1965;
Ribosome recycling related cluster
fig|6666666.229912.peg.834 CDS AEJL02000034.1 19141 19254 1 + 114 hypothetical protein - none -
fig|6666666.229912.peg.835 CDS AEJL02000034.1 19247 20095 2 + 849 Translation elongation factor Ts CBSS-312309.3.peg.1965;
Ribosome recycling related cluster;
Translation elongation factors bacterial
fig|6666666.229912.peg.836 CDS AEJL02000034.1 20403 21089 3 + 687 DNA recombination and repair protein RecO CBSS-176299.4.peg.1292;
DNA repair, bacterial RecFOR pathway;
Glycyl-tRNA synthetase containing cluster
fig|6666666.229912.peg.837 CDS AEJL02000034.1 21091 22407 1 + 1317 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) RNA methylation
fig|6666666.229912.peg.838 CDS AEJL02000034.1 22417 24648 1 + 2232 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I CBSS-176299.4.peg.1292;
Stringent Response, (p)ppGpp metabolism
fig|6666666.229912.peg.839 CDS AEJL02000035.1 380 655 2 + 276 Mobile element protein - none -
fig|6666666.229912.peg.840 CDS AEJL02000035.1 738 878 3 + 141 Mobile element protein - none -
fig|6666666.229912.peg.841 CDS AEJL02000036.1 3134 1737 -2 - 1398 Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps Multidrug Resistance Efflux Pumps;
Riboflavin, FMN and FAD metabolism in plants
fig|6666666.229912.peg.842 CDS AEJL02000036.1 3161 3775 2 + 615 Riboflavin synthase eubacterial/eukaryotic (EC 2.5.1.9) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster;
riboflavin to FAD
fig|6666666.229912.peg.843 CDS AEJL02000036.1 4104 3808 -3 - 297 FIG045511: hypothetical antitoxin (to FIG022160: hypothetical toxin) - none -
fig|6666666.229912.peg.844 CDS AEJL02000036.1 4400 4101 -2 - 300 Phage-related protein - none -
fig|6666666.229912.peg.845 CDS AEJL02000036.1 4568 4870 2 + 303 FIG004454: RNA binding protein - none -
fig|6666666.229912.peg.846 CDS AEJL02000036.1 5422 4946 -1 - 477 Transcription elongation factor GreA Transcription factors bacterial
fig|6666666.229912.peg.847 CDS AEJL02000036.1 5582 7024 2 + 1443 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) Metallocarboxypeptidases (EC 3.4.17.-);
Murein Hydrolases;
Peptidoglycan Biosynthesis
fig|6666666.229912.peg.848 CDS AEJL02000036.1 7781 7125 -2 - 657 GTP cyclohydrolase I (EC 3.5.4.16) type 1 Folate Biosynthesis;
Folate biosynthesis cluster;
Molybdenum cofactor biosynthesis;
Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229912.peg.849 CDS AEJL02000036.1 7910 9124 2 + 1215 Molybdopterin biosynthesis protein MoeA Molybdenum cofactor biosynthesis
fig|6666666.229912.peg.850 CDS AEJL02000036.1 9140 9871 2 + 732 Molybdopterin biosynthesis protein MoeB Molybdenum cofactor biosynthesis
fig|6666666.229912.peg.851 CDS AEJL02000036.1 10591 11448 1 + 858 FIG000875: Thioredoxin domain-containing protein EC-YbbN - none -
fig|6666666.229912.peg.852 CDS AEJL02000036.1 11508 12461 3 + 954 Thioredoxin reductase (EC 1.8.1.9) Thioredoxin-disulfide reductase;
pyrimidine conversions
fig|6666666.229912.peg.853 CDS AEJL02000036.1 12495 14330 3 + 1836 Transport ATP-binding protein CydD Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229912.peg.854 CDS AEJL02000036.1 14330 16063 2 + 1734 Transport ATP-binding protein CydC Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229912.peg.855 CDS AEJL02000036.1 16314 17246 3 + 933 Acyl-CoA thioesterase II (EC 3.1.2.-) Acyl-CoA thioesterase II
fig|6666666.229912.peg.856 CDS AEJL02000036.1 17458 17330 -1 - 129 hypothetical protein - none -
fig|6666666.229912.peg.857 CDS AEJL02000036.1 18240 17455 -3 - 786 serine/threonine protein kinase - none -
fig|6666666.229912.peg.858 CDS AEJL02000036.1 18782 18261 -2 - 522 unknown - none -
fig|6666666.229912.peg.859 CDS AEJL02000036.1 18984 19310 3 + 327 Putative lipoprotein yceB precursor - none -
fig|6666666.229912.peg.860 CDS AEJL02000036.1 19333 19569 1 + 237 Putative lipoprotein yceB precursor - none -
fig|6666666.229912.peg.861 CDS AEJL02000036.1 20540 19626 -2 - 915 ROK family Glucokinase with ambiguous substrate specificity - none -
fig|6666666.229912.peg.862 CDS AEJL02000036.1 21325 20591 -1 - 735 Phosphatidylglycerophosphatase B (EC 3.1.3.27) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Osmotic stress cluster
fig|6666666.229912.peg.863 CDS AEJL02000036.1 21408 22061 3 + 654 GTP cyclohydrolase II (EC 3.5.4.25) Molybdenum cofactor biosynthesis;
Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster
fig|6666666.229912.peg.864 CDS AEJL02000036.1 22336 23076 1 + 741 FIG00698611: hypothetical protein - none -
fig|6666666.229912.peg.865 CDS AEJL02000036.1 23922 23380 -3 - 543 dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) Capsular heptose biosynthesis;
Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229912.peg.866 CDS AEJL02000036.1 24803 23925 -2 - 879 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229912.peg.867 CDS AEJL02000036.1 25676 24804 -2 - 873 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229912.peg.868 CDS AEJL02000036.1 26821 25754 -1 - 1068 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229912.peg.869 CDS AEJL02000036.1 27200 27060 -2 - 141 Phosphomannomutase (EC 5.4.2.8) Mannose Metabolism
fig|6666666.229912.peg.870 CDS AEJL02000036.1 29183 27873 -2 - 1311 Undecaprenyl-phosphate galactosephosphotransferase (EC 2.7.8.6) - none -
fig|6666666.229912.peg.871 CDS AEJL02000036.1 30216 29191 -3 - 1026 Mannose-1-phosphate guanylyltransferase (GDP) (EC 2.7.7.22) Mannose Metabolism
fig|6666666.229912.peg.872 CDS AEJL02000036.1 31331 30213 -2 - 1119 Glycosyltransferase - none -
fig|6666666.229912.peg.873 CDS AEJL02000036.1 32621 31443 -2 - 1179 Glycosyltransferase - none -
fig|6666666.229912.peg.874 CDS AEJL02000036.1 33870 32590 -3 - 1281 hypothetical protein - none -
fig|6666666.229912.peg.875 CDS AEJL02000036.1 34872 33907 -3 - 966 glycosyl transferase family 2 - none -
fig|6666666.229912.peg.876 CDS AEJL02000036.1 36183 34906 -3 - 1278 Membrane protein involved in the export of O-antigen, teichoic acid lipoteichoic acids - none -
fig|6666666.229912.peg.877 CDS AEJL02000036.1 37292 36183 -2 - 1110 regulator of length of O-antigen component of lipopolysaccharide chains KDO2-Lipid A biosynthesis
fig|6666666.229912.peg.878 CDS AEJL02000036.1 38190 37402 -3 - 789 DNA for glycosyltransferase, lytic transglycosylase, dTDP-4-rhamnose reductase Rhamnose containing glycans
fig|6666666.229912.peg.879 CDS AEJL02000036.1 38993 38190 -2 - 804 Exodeoxyribonuclease III (EC 3.1.11.2) DNA repair, bacterial
fig|6666666.229912.peg.880 CDS AEJL02000036.1 40015 39020 -1 - 996 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) Murein Hydrolases;
Peptidoglycan Biosynthesis
fig|6666666.229912.peg.881 CDS AEJL02000036.1 40005 40166 3 + 162 hypothetical protein - none -
fig|6666666.229912.peg.882 CDS AEJL02000036.1 40964 40155 -2 - 810 Glucosyl-3-phosphoglycerate synthase (EC 2.4.1.266) - none -
fig|6666666.229912.peg.883 CDS AEJL02000036.1 41914 41033 -1 - 882 Glycosyltransferase - none -
fig|6666666.229912.peg.884 CDS AEJL02000036.1 43104 41914 -3 - 1191 DNA for glycosyltransferase, lytic transglycosylase, dTDP-4-rhamnose reductase Rhamnose containing glycans
fig|6666666.229912.peg.885 CDS AEJL02000036.1 43889 43113 -2 - 777 Lipopolysaccharide core biosynthesis glycosyltransferase WadA - none -
fig|6666666.229912.peg.886 CDS AEJL02000036.1 44080 45543 1 + 1464 putative flippase - none -
fig|6666666.229912.peg.887 CDS AEJL02000036.1 45540 46496 3 + 957 Polysaccharide polymerization protein - none -
fig|6666666.229912.peg.888 CDS AEJL02000036.1 46605 46856 3 + 252 YefM protein (antitoxin to YoeB) Toxin-antitoxin replicon stabilization systems
fig|6666666.229912.peg.889 CDS AEJL02000036.1 46853 47107 2 + 255 YoeB toxin protein Toxin-antitoxin replicon stabilization systems
fig|6666666.229912.peg.890 CDS AEJL02000036.1 47120 47863 2 + 744 Probable transmembrane protein - none -
fig|6666666.229912.peg.891 CDS AEJL02000036.1 47836 47997 1 + 162 hypothetical protein - none -
fig|6666666.229912.peg.892 CDS AEJL02000036.1 48040 48867 1 + 828 DNA ligase (ATP) (EC 6.5.1.1) DNA ligases
fig|6666666.229912.peg.893 CDS AEJL02000036.1 51173 48999 -2 - 2175 ATP-dependent DNA helicase UvrD/PcrA DNA repair, bacterial UvrD and related helicases
fig|6666666.229912.peg.894 CDS AEJL02000036.1 52695 51346 -3 - 1350 Low-affinity gluconate/H+ symporter GntU D-gluconate and ketogluconates metabolism
fig|6666666.229912.peg.895 CDS AEJL02000036.1 52913 53431 2 + 519 Gluconokinase (EC 2.7.1.12) D-gluconate and ketogluconates metabolism;
Entner-Doudoroff Pathway
fig|6666666.229912.peg.896 CDS AEJL02000036.1 53550 53428 -3 - 123 hypothetical protein - none -
fig|6666666.229912.peg.897 CDS AEJL02000036.1 54499 53501 -1 - 999 Gluconate utilization system Gnt-I transcriptional repressor D-gluconate and ketogluconates metabolism
fig|6666666.229912.peg.898 CDS AEJL02000036.1 55372 54548 -1 - 825 Formate dehydrogenase chain D (EC 1.2.1.2) Formate hydrogenase
fig|6666666.229912.peg.899 CDS AEJL02000036.1 55593 58703 3 + 3111 Formate dehydrogenase N alpha subunit (EC 1.2.1.2) @ selenocysteine-containing Formate dehydrogenase;
Formate hydrogenase
fig|6666666.229912.peg.900 CDS AEJL02000036.1 58801 59631 1 + 831 Formate dehydrogenase O beta subunit (EC 1.2.1.2) Formate dehydrogenase;
Formate hydrogenase
fig|6666666.229912.peg.901 CDS AEJL02000036.1 59624 60337 2 + 714 Formate dehydrogenase -O, gamma subunit (EC 1.2.1.2) Anaerobic respiratory reductases;
Formate hydrogenase
fig|6666666.229912.peg.902 CDS AEJL02000036.1 60487 60603 1 + 117 hypothetical protein - none -
fig|6666666.229912.peg.903 CDS AEJL02000036.1 63243 60958 -3 - 2286 [NiFe] hydrogenase metallocenter assembly protein HypF G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229912.peg.904 CDS AEJL02000036.1 71961 72320 3 + 360 Hydrogenase-4 component A (EC 1.-.-.-) Formate hydrogenase
fig|6666666.229912.peg.905 CDS AEJL02000036.1 72354 74375 3 + 2022 Hydrogenase-4 component B (EC 1.-.-.-) / Formate hydrogenlyase subunit 3 Formate hydrogenase;
Formate hydrogenase
fig|6666666.229912.peg.906 CDS AEJL02000036.1 74383 75348 1 + 966 Hydrogenase-4 component C (EC 1.-.-.-) Formate hydrogenase
fig|6666666.229912.peg.907 CDS AEJL02000036.1 75361 76806 1 + 1446 Na(+) H(+) antiporter subunit A - none -
fig|6666666.229912.peg.908 CDS AEJL02000036.1 76817 77455 2 + 639 Hydrogenase-4 component E (EC 1.-.-.-) Formate hydrogenase
fig|6666666.229912.peg.909 CDS AEJL02000036.1 77460 78998 3 + 1539 Hydrogenase-4 component F - none -
fig|6666666.229912.peg.910 CDS AEJL02000036.1 79018 80748 1 + 1731 Formate hydrogenlyase subunit 5 Formate hydrogenase
fig|6666666.229912.peg.911 CDS AEJL02000036.1 80762 81409 2 + 648 Formate hydrogenlyase complex 3 iron-sulfur protein; Formate hydrogenlyase subunit 6; Ni,Fe-hydrogenase III medium subunit Formate hydrogenase
fig|6666666.229912.peg.912 CDS AEJL02000036.1 81406 82182 1 + 777 Formate hydrogenlyase subunit 7 Formate hydrogenase
fig|6666666.229912.peg.913 CDS AEJL02000036.1 82264 82668 1 + 405 Formate hydrogenlyase transcriptional activator Formate hydrogenase
fig|6666666.229912.peg.914 CDS AEJL02000036.1 82658 83119 2 + 462 Coenzyme F420 hydrogenase maturation protease (EC 3.4.24.-) Hydrogenases
fig|6666666.229912.peg.915 CDS AEJL02000036.1 83247 84461 3 + 1215 cell filamentation protein Fic-related protein - none -
fig|6666666.229912.peg.916 CDS AEJL02000036.1 84594 86816 3 + 2223 Formate dehydrogenase H (EC 1.2.1.2) @ selenocysteine-containing Formate dehydrogenase
fig|6666666.229912.peg.919 CDS AEJL02000036.1 89150 87858 -2 - 1293 hypothetical protein - none -
fig|6666666.229912.peg.920 CDS AEJL02000036.1 90055 89183 -1 - 873 Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) Serine-glyoxylate cycle;
TCA Cycle
fig|6666666.229912.peg.921 CDS AEJL02000036.1 91235 90066 -2 - 1170 Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) Serine-glyoxylate cycle;
TCA Cycle
fig|6666666.229912.peg.922 CDS AEJL02000036.1 92644 91421 -1 - 1224 Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61) Dehydrogenase complexes;
TCA Cycle
fig|6666666.229912.peg.923 CDS AEJL02000036.1 93738 92770 -3 - 969 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) Dehydrogenase complexes;
TCA Cycle
fig|6666666.229912.peg.924 CDS AEJL02000038.1 3801 1411 -3 - 2391 Maltodextrin phosphorylase (EC 2.4.1.1) Glycogen metabolism;
Maltose and Maltodextrin Utilization;
Maltose utilization cluster
fig|6666666.229912.peg.925 CDS AEJL02000038.1 3970 6684 1 + 2715 Transcriptional activator of maltose regulon, MalT Maltose and Maltodextrin Utilization;
Maltose utilization cluster
fig|6666666.229912.peg.926 CDS AEJL02000038.1 7712 6837 -2 - 876 Tellurite resistance protein TehB Tellurite resistance: Chromosomal determinants
fig|6666666.229912.peg.927 CDS AEJL02000038.1 8091 10748 3 + 2658 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) 5-FCL-like protein;
Dehydrogenase complexes;
Methionine Degradation;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229912.peg.928 CDS AEJL02000038.1 10777 12447 1 + 1671 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) 5-FCL-like protein;
Dehydrogenase complexes;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229912.peg.929 CDS AEJL02000038.1 12484 13965 1 + 1482 Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4) 5-FCL-like protein;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate;
TCA Cycle;
TCA Cycle
fig|6666666.229912.peg.930 CDS AEJL02000038.1 14170 14051 -1 - 120 hypothetical protein - none -
fig|6666666.229912.peg.931 CDS AEJL02000038.1 14949 14395 -3 - 555 FIG002003: Protein YdjA - none -
fig|6666666.229912.peg.932 CDS AEJL02000038.1 15073 16953 1 + 1881 Signal peptide peptidase SppA (EC 3.4.21.-) - none -
fig|6666666.229912.peg.933 CDS AEJL02000038.1 16994 18118 2 + 1125 Chorismate mutase I (EC 5.4.99.5) / Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) Chorismate Synthesis;
Chorismate Synthesis;
Phenylalanine and Tyrosine Branches from Chorismate;
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229912.peg.934 CDS AEJL02000038.1 18199 18822 1 + 624 Hypothetical YciO protein, TsaC/YrdC paralog YrdC-YciO-Sua5 protein family
fig|6666666.229912.peg.935 CDS AEJL02000038.1 18877 19845 1 + 969 Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70) RNA pseudouridine syntheses
fig|6666666.229912.peg.936 CDS AEJL02000038.1 19876 20847 1 + 972 Cys regulon transcriptional activator CysB Cysteine Biosynthesis;
LysR-family proteins in Escherichia coli
fig|6666666.229912.peg.937 CDS AEJL02000038.1 20932 21759 1 + 828 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229912.peg.938 CDS AEJL02000038.1 22194 21874 -3 - 321 putative cytoplasmic protein - none -
fig|6666666.229912.peg.939 CDS AEJL02000038.1 22361 22227 -2 - 135 hypothetical protein - none -
fig|6666666.229912.peg.940 CDS AEJL02000038.1 23661 22663 -3 - 999 Purine nucleotide synthesis repressor Purine nucleotide synthesis regulator
fig|6666666.229912.peg.941 CDS AEJL02000038.1 25070 23967 -2 - 1104 Homoserine O-acetyltransferase (EC 2.3.1.31) Methionine Biosynthesis
fig|6666666.229912.peg.942 CDS AEJL02000038.1 25263 25976 3 + 714 SanA protein - none -
fig|6666666.229912.peg.943 CDS AEJL02000038.1 26946 25960 -3 - 987 Fructose repressor FruR, LacI family Fructose utilization
fig|6666666.229912.peg.944 CDS AEJL02000038.1 27269 27135 -2 - 135 hypothetical protein - none -
fig|6666666.229912.peg.945 CDS AEJL02000039.1 956 36 -2 - 921 RfbJ protein - none -
fig|6666666.229912.peg.946 CDS AEJL02000039.1 2472 964 -3 - 1509 putative integral membrane protein - none -
fig|6666666.229912.peg.947 CDS AEJL02000039.1 3076 2459 -1 - 618 Glycerate kinase (EC 2.7.1.31) D-galactarate, D-glucarate and D-glycerate catabolism;
D-galactarate, D-glucarate and D-glycerate catabolism - gjo;
Glycerate metabolism;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Glycine and Serine Utilization;
Serine-glyoxylate cycle
fig|6666666.229912.peg.948 CDS AEJL02000039.1 4619 3105 -2 - 1515 Dca - none -
fig|6666666.229912.peg.949 CDS AEJL02000039.1 5953 5132 -1 - 822 probable phage integrase - none -
fig|6666666.229912.peg.950 CDS AEJL02000039.1 7947 6037 -3 - 1911 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes - none -
fig|6666666.229912.peg.951 CDS AEJL02000039.1 8241 8420 3 + 180 Haemophilus-specific protein, uncharacterized - none -
fig|6666666.229912.peg.952 CDS AEJL02000039.1 8734 8913 1 + 180 hypothetical protein - none -
fig|6666666.229912.peg.953 CDS AEJL02000039.1 9741 10085 3 + 345 Programmed cell death toxin MazF - none -
fig|6666666.229912.peg.954 CDS AEJL02000039.1 10650 11318 3 + 669 Cytolethal distending toxin subunit A Cytolethal distending toxin of Campylobacter jejuni;
Cytolethal distending toxins
fig|6666666.229912.peg.955 CDS AEJL02000039.1 11333 12184 2 + 852 Cytolethal distending toxin subunit B Cytolethal distending toxin of Campylobacter jejuni;
Cytolethal distending toxins
fig|6666666.229912.peg.956 CDS AEJL02000039.1 12195 12755 3 + 561 Cytolethal distending toxin subunit C Cytolethal distending toxin of Campylobacter jejuni;
Cytolethal distending toxins
fig|6666666.229912.peg.957 CDS AEJL02000039.1 14123 13362 -2 - 762 DUF1526 domain-containing protein - none -
fig|6666666.229912.peg.958 CDS AEJL02000039.1 14825 14938 2 + 114 hypothetical protein - none -
fig|6666666.229912.peg.959 CDS AEJL02000039.1 15173 15496 2 + 324 FIG00696053: hypothetical protein - none -
fig|6666666.229912.peg.960 CDS AEJL02000039.1 15496 15735 1 + 240 hypothetical protein - none -
fig|6666666.229912.peg.961 CDS AEJL02000039.1 15752 16159 2 + 408 FIG00696269: hypothetical protein - none -
fig|6666666.229912.peg.962 CDS AEJL02000039.1 16178 16549 2 + 372 FIG00696467: hypothetical protein - none -
fig|6666666.229912.peg.963 CDS AEJL02000039.1 16561 17193 1 + 633 Possible exported protein - none -
fig|6666666.229912.peg.964 CDS AEJL02000039.1 17193 18053 3 + 861 FIG00698030: hypothetical protein - none -
fig|6666666.229912.peg.965 CDS AEJL02000039.1 18064 19452 1 + 1389 putative exported protein - none -
fig|6666666.229912.peg.966 CDS AEJL02000039.1 19461 19868 3 + 408 putative lipoprotein - none -
fig|6666666.229912.peg.967 CDS AEJL02000039.1 20706 20158 -3 - 549 3@1-to-5@1 oligoribonuclease (orn) RNA processing and degradation, bacterial
fig|6666666.229912.peg.968 CDS AEJL02000039.1 20778 21818 3 + 1041 Ribosome small subunit-stimulated GTPase EngC Universal GTPases
fig|6666666.229912.peg.969 CDS AEJL02000039.1 22039 22296 1 + 258 Phosphotransferase system, phosphocarrier protein HPr Fructose utilization;
Mannitol Utilization
fig|6666666.229912.peg.970 CDS AEJL02000039.1 22413 24140 3 + 1728 Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) Fructose utilization;
Mannitol Utilization
fig|6666666.229912.peg.971 CDS AEJL02000039.1 24201 24701 3 + 501 PTS system, glucose-specific IIA component - none -
fig|6666666.229912.peg.972 CDS AEJL02000039.1 26866 24827 -1 - 2040 Oligopeptidase A (EC 3.4.24.70) Protein degradation
fig|6666666.229912.peg.973 CDS AEJL02000039.1 27008 27373 2 + 366 FIG039061: hypothetical protein related to heme utilization - none -
fig|6666666.229912.peg.974 CDS AEJL02000039.1 27429 27824 3 + 396 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229912.peg.975 CDS AEJL02000039.1 27897 28967 3 + 1071 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229912.peg.976 CDS AEJL02000039.1 29357 29238 -2 - 120 hypothetical protein - none -
fig|6666666.229912.peg.977 CDS AEJL02000039.1 29581 29402 -1 - 180 hypothetical protein - none -
fig|6666666.229912.peg.978 CDS AEJL02000040.1 251 922 2 + 672 Deoxyribose-phosphate aldolase (EC 4.1.2.4) Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.229912.peg.979 CDS AEJL02000040.1 950 1699 2 + 750 Deoxyribose operon repressor, DeoR family Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.229912.peg.980 CDS AEJL02000040.1 1837 2928 1 + 1092 Putative exported protein precursor - none -
fig|6666666.229912.peg.981 CDS AEJL02000040.1 4430 3060 -2 - 1371 N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23) / Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157) Peptidoglycan Biosynthesis;
Peptidoglycan Biosynthesis;
Sialic Acid Metabolism;
Sialic Acid Metabolism;
Transcription repair cluster;
Transcription repair cluster;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229912.peg.982 CDS AEJL02000040.1 4516 5646 1 + 1131 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) Recycling of Peptidoglycan Amino Sugars
fig|6666666.229912.peg.983 CDS AEJL02000040.1 5643 6557 3 + 915 N-acetylmuramic acid 6-phosphate etherase - none -
fig|6666666.229912.peg.984 CDS AEJL02000040.1 6722 7768 2 + 1047 ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1) Polyamine Metabolism
fig|6666666.229912.peg.985 CDS AEJL02000040.1 8257 7829 -1 - 429 ATP synthase epsilon chain (EC 3.6.3.14) - none -
fig|6666666.229912.peg.986 CDS AEJL02000040.1 9672 8299 -3 - 1374 ATP synthase beta chain (EC 3.6.3.14) - none -
fig|6666666.229912.peg.987 CDS AEJL02000040.1 10558 9689 -1 - 870 ATP synthase gamma chain (EC 3.6.3.14) - none -
fig|6666666.229912.peg.988 CDS AEJL02000040.1 12115 10574 -1 - 1542 ATP synthase alpha chain (EC 3.6.3.14) - none -
fig|6666666.229912.peg.989 CDS AEJL02000040.1 12676 12128 -1 - 549 ATP synthase delta chain (EC 3.6.3.14) - none -
fig|6666666.229912.peg.990 CDS AEJL02000040.1 13160 12690 -2 - 471 ATP synthase F0 sector subunit b - none -
fig|6666666.229912.peg.991 CDS AEJL02000040.1 13464 13210 -3 - 255 ATP synthase F0 sector subunit c (EC 3.6.3.14) - none -
fig|6666666.229912.peg.992 CDS AEJL02000040.1 14304 13516 -3 - 789 ATP synthase F0 sector subunit a - none -
fig|6666666.229912.peg.993 CDS AEJL02000040.1 14706 14329 -3 - 378 FIG048548: ATP synthase protein I2 - none -
fig|6666666.229912.peg.994 CDS AEJL02000040.1 15501 14818 -3 - 684 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB Cell Division Subsystem including YidCD;
RNA methylation;
RNA modification and chromosome partitioning cluster
fig|6666666.229912.peg.995 CDS AEJL02000040.1 15856 15494 -1 - 363 Redox-sensing transcriptional regulator QorR NADPH:quinone oxidoreductase 2
fig|6666666.229912.peg.996 CDS AEJL02000040.1 16008 16178 3 + 171 NADPH:quinone oxidoreductase 2 NADPH:quinone oxidoreductase 2
fig|6666666.229912.peg.997 CDS AEJL02000040.1 16163 16864 2 + 702 NADPH:quinone oxidoreductase 2 NADPH:quinone oxidoreductase 2
fig|6666666.229912.peg.998 CDS AEJL02000040.1 17018 17134 2 + 117 hypothetical protein - none -
fig|6666666.229912.peg.999 CDS AEJL02000040.1 19025 17136 -2 - 1890 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA Cell Division Subsystem including YidCD;
RNA modification and chromosome partitioning cluster;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229912.peg.1000 CDS AEJL02000040.1 19897 19454 -1 - 444 Flavoprotein MioC Flavodoxin
fig|6666666.229912.peg.1001 CDS AEJL02000040.1 20172 19954 -3 - 219 FIG074102: hypothetical protein - none -
fig|6666666.229912.peg.1002 CDS AEJL02000040.1 20368 21381 1 + 1014 Fructose-1,6-bisphosphatase, GlpX type (EC 3.1.3.11) Glycolysis and Gluconeogenesis
fig|6666666.229912.peg.1003 CDS AEJL02000040.1 21823 21419 -1 - 405 hypothetical protein - none -
fig|6666666.229912.peg.1004 CDS AEJL02000040.1 21844 21975 1 + 132 hypothetical protein - none -
fig|6666666.229912.peg.1005 CDS AEJL02000040.1 22820 22023 -2 - 798 Serine acetyltransferase (EC 2.3.1.30) Cysteine Biosynthesis;
Methionine Biosynthesis
fig|6666666.229912.peg.1006 CDS AEJL02000040.1 23836 22823 -1 - 1014 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) Glutaredoxin 3 containing cluster;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229912.peg.1007 CDS AEJL02000040.1 24426 23914 -3 - 513 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) Glutaredoxin 3 containing cluster
fig|6666666.229912.peg.1008 CDS AEJL02000040.1 24948 24442 -3 - 507 FIG136845: Rhodanese-related sulfurtransferase Glutaredoxin 3 containing cluster
fig|6666666.229912.peg.1009 CDS AEJL02000040.1 25209 26531 3 + 1323 Anaerobic C4-dicarboxylate membrane transporter DcuA - none -
fig|6666666.229912.peg.1010 CDS AEJL02000041.1 362 105 -2 - 258 hypothetical protein - none -
fig|6666666.229912.peg.1011 CDS AEJL02000041.1 1559 507 -2 - 1053 Outer membrane protein P2 precursor (OMP P2) - none -
fig|6666666.229912.peg.1012 CDS AEJL02000041.1 2963 1773 -2 - 1191 Cystathionine beta-lyase (EC 4.4.1.8) Methionine Biosynthesis
fig|6666666.229912.peg.1013 CDS AEJL02000041.1 3218 3775 2 + 558 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229912.peg.1014 CDS AEJL02000041.1 5293 5048 -1 - 246 NAD-dependent protein deacetylase of SIR2 family Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229912.peg.1015 CDS AEJL02000041.1 5745 5269 -3 - 477 NAD-dependent protein deacetylase of SIR2 family Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229912.peg.1016 CDS AEJL02000041.1 6408 5761 -3 - 648 Glutaredoxin 2 Glutaredoxins;
Glutathione: Redox cycle
fig|6666666.229912.peg.1017 CDS AEJL02000041.1 8000 6525 -2 - 1476 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) Bacterial Cell Division;
CBSS-354.1.peg.2917;
RNA processing and degradation, bacterial
fig|6666666.229912.peg.1018 CDS AEJL02000041.1 8140 9660 1 + 1521 Proline/sodium symporter PutP (TC 2.A.21.2.1) @ Propionate/sodium symporter - none -
fig|6666666.229912.peg.1019 CDS AEJL02000041.1 9674 10639 2 + 966 tRNA (5-methoxyuridine) 34 synthase tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229912.peg.1020 CDS AEJL02000041.1 10727 12025 2 + 1299 Adenylosuccinate synthetase (EC 6.3.4.4) Purine conversions
fig|6666666.229912.peg.1021 CDS AEJL02000041.1 12380 12090 -2 - 291 hypothetical protein - none -
fig|6666666.229912.peg.1022 CDS AEJL02000041.1 13386 12403 -3 - 984 DnaJ-class molecular chaperone CbpA Protein chaperones
fig|6666666.229912.peg.1023 CDS AEJL02000041.1 13674 15206 3 + 1533 GTP-binding protein EngA CBSS-290633.1.peg.1906;
CBSS-498211.3.peg.1415;
Universal GTPases
fig|6666666.229912.peg.1024 CDS AEJL02000041.1 16472 15276 -2 - 1197 Sugar efflux transporter SotB - none -
fig|6666666.229912.peg.1025 CDS AEJL02000041.1 17676 16474 -3 - 1203 FIG00696476: hypothetical protein - none -
fig|6666666.229912.peg.1026 CDS AEJL02000041.1 18261 17677 -3 - 585 Deoxycytidine triphosphate deaminase (EC 3.5.4.13) pyrimidine conversions
fig|6666666.229912.peg.1027 CDS AEJL02000041.1 18921 18271 -3 - 651 Uridine kinase (EC 2.7.1.48) [C1] pyrimidine conversions
fig|6666666.229912.peg.1028 CDS AEJL02000041.1 19230 20270 3 + 1041 Ferric iron ABC transporter, iron-binding protein Iron acquisition in Streptococcus
fig|6666666.229912.peg.1029 CDS AEJL02000041.1 20432 21475 2 + 1044 Ferric iron ABC transporter, iron-binding protein Iron acquisition in Streptococcus
fig|6666666.229912.peg.1030 CDS AEJL02000041.1 21503 23560 2 + 2058 Ferric iron ABC transporter, permease protein Iron acquisition in Streptococcus
fig|6666666.229912.peg.1031 CDS AEJL02000041.1 23576 24622 2 + 1047 Fe(3+) ions import ATP-binding protein fbpC (EC 3.6.3.30) - none -
fig|6666666.229912.peg.1032 CDS AEJL02000041.1 24901 27021 1 + 2121 unknown - none -
fig|6666666.229912.peg.1033 CDS AEJL02000041.1 28831 28259 -1 - 573 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) Proline Synthesis
fig|6666666.229912.peg.1034 CDS AEJL02000041.1 29620 28961 -1 - 660 putative membrane protein - none -
fig|6666666.229912.peg.1035 CDS AEJL02000041.1 29817 29701 -3 - 117 hypothetical protein - none -
fig|6666666.229912.peg.1036 CDS AEJL02000041.1 29832 30638 3 + 807 Permeases of the drug/metabolite transporter (DMT) superfamily - none -
fig|6666666.229912.peg.1037 CDS AEJL02000041.1 31908 30901 -3 - 1008 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) Cluster Ytf and putative sugar transporter;
Glycolysis and Gluconeogenesis;
Putative sugar ABC transporter (ytf cluster)
fig|6666666.229912.peg.1038 CDS AEJL02000041.1 32066 33439 2 + 1374 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (EC 6.3.2.-) Peptidoglycan biosynthesis--gjo;
Recycling of Peptidoglycan Amino Acids
fig|6666666.229912.peg.1039 CDS AEJL02000041.1 33747 33622 -3 - 126 hypothetical protein - none -
fig|6666666.229912.peg.1040 CDS AEJL02000041.1 33817 34935 1 + 1119 Membrane-bound lytic murein transglycosylase A precursor (EC 3.2.1.-) Murein Hydrolases
fig|6666666.229912.peg.1041 CDS AEJL02000041.1 34935 35705 3 + 771 CsdL (EC-YgdL) protein of the HesA/MoeB/ThiF family, part of the CsdA-E-L sulfur transfer pathway - none -
fig|6666666.229912.peg.1042 CDS AEJL02000041.1 35805 36824 3 + 1020 Zinc ABC transporter, periplasmic-binding protein ZnuA - none -
fig|6666666.229912.peg.1043 CDS AEJL02000041.1 36952 37764 1 + 813 Outer membrane lipoprotein e (P4) / NMN 5@1-nucleotidase, extracellular (EC 3.1.3.5) NAD and NADP cofactor biosynthesis global
fig|6666666.229912.peg.1044 CDS AEJL02000041.1 38719 38303 -1 - 417 conserved hypothetical protein; possible membrane protein - none -
fig|6666666.229912.peg.1045 CDS AEJL02000041.1 38792 39220 2 + 429 Putative oligoketide cyclase/lipid transport protein, similarity with yeast ubiquinone-binding protein YOL008W - none -
fig|6666666.229912.peg.1046 CDS AEJL02000041.1 39213 39506 3 + 294 UPF0125 protein yfjF - none -
fig|6666666.229912.peg.1047 CDS AEJL02000041.1 39539 40732 2 + 1194 FIG074102: hypothetical protein - none -
fig|6666666.229912.peg.1048 CDS AEJL02000041.1 40739 42073 2 + 1335 Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) DNA repair, bacterial;
Purine salvage cluster
fig|6666666.229912.peg.1049 CDS AEJL02000041.1 42933 42079 -3 - 855 FIG000506: Predicted P-loop-containing kinase - none -
fig|6666666.229912.peg.1050 CDS AEJL02000041.1 43494 42961 -3 - 534 PTS IIA-like nitrogen-regulatory protein PtsN - none -
fig|6666666.229912.peg.1051 CDS AEJL02000041.1 44223 43498 -3 - 726 Lipopolysaccharide ABC transporter, ATP-binding protein LptB KDO2-Lipid A biosynthesis;
Lipopolysaccharide assembly
fig|6666666.229912.peg.1052 CDS AEJL02000041.1 44747 44229 -2 - 519 LptA, protein essential for LPS transport across the periplasm KDO2-Lipid A biosynthesis;
Lipopolysaccharide assembly
fig|6666666.229912.peg.1053 CDS AEJL02000041.1 45303 44728 -3 - 576 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters Lipopolysaccharide assembly
fig|6666666.229912.peg.1054 CDS AEJL02000041.1 45416 45300 -2 - 117 hypothetical protein - none -
fig|6666666.229912.peg.1055 CDS AEJL02000041.1 45586 46383 1 + 798 Uncharacterized ABC transporter, ATP-binding protein YrbF CBSS-12149.1.peg.3301;
Lipopolysaccharide assembly
fig|6666666.229912.peg.1056 CDS AEJL02000041.1 46377 47162 3 + 786 Uncharacterized ABC transporter, permease component YrbE CBSS-12149.1.peg.3301;
Lipopolysaccharide assembly
fig|6666666.229912.peg.1057 CDS AEJL02000041.1 47185 47694 1 + 510 Uncharacterized ABC transporter, periplasmic component YrbD CBSS-12149.1.peg.3301;
Lipopolysaccharide assembly
fig|6666666.229912.peg.1058 CDS AEJL02000041.1 47723 48364 2 + 642 Uncharacterized ABC transporter, auxiliary component YrbC CBSS-12149.1.peg.3301;
Lipopolysaccharide assembly
fig|6666666.229912.peg.1059 CDS AEJL02000041.1 48458 48727 2 + 270 Uncharacterized protein YrbB CBSS-12149.1.peg.3301
fig|6666666.229912.peg.1060 CDS AEJL02000041.1 48727 48984 1 + 258 YrbA protein Broadly distributed proteins not in subsystems;
CBSS-12149.1.peg.3301
fig|6666666.229912.peg.1061 CDS AEJL02000041.1 49001 50278 2 + 1278 UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7) CBSS-12149.1.peg.3301;
Peptidoglycan Biosynthesis;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229912.peg.1062 CDS AEJL02000041.1 50630 50340 -2 - 291 FIG00696346: hypothetical protein - none -
fig|6666666.229912.peg.1063 CDS AEJL02000041.1 50834 52264 2 + 1431 Long-chain fatty acid transport protein - none -
fig|6666666.229912.peg.1064 CDS AEJL02000041.1 52341 52880 3 + 540 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) DNA repair, bacterial
fig|6666666.229912.peg.1065 CDS AEJL02000041.1 52877 53545 2 + 669 DNA mismatch repair endonuclease MutH DNA repair, bacterial
fig|6666666.229912.peg.1066 CDS AEJL02000041.1 53610 54335 3 + 726 Integral membrane protein TerC - none -
fig|6666666.229912.peg.1067 CDS AEJL02000041.1 55853 54444 -2 - 1410 Glutamine synthetase type I (EC 6.3.1.2) Ammonia assimilation;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Glutamine synthetases;
Peptidoglycan Biosynthesis
fig|6666666.229912.peg.1068 CDS AEJL02000041.1 56240 58093 2 + 1854 GTP-binding protein TypA/BipA Universal GTPases
fig|6666666.229912.peg.1069 CDS AEJL02000041.1 58319 60829 2 + 2511 TolA protein Ton and Tol transport systems
fig|6666666.229912.peg.1070 CDS AEJL02000041.1 61357 60893 -1 - 465 Thiol peroxidase, Bcp-type (EC 1.11.1.15) CBSS-316057.3.peg.3521;
Thioredoxin-disulfide reductase
fig|6666666.229912.peg.1071 CDS AEJL02000041.1 61515 62408 3 + 894 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229912.peg.1072 CDS AEJL02000041.1 62521 63525 1 + 1005 Outer membrane protein NlpB, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and YfgL); Lipoprotein-34 precursor Lipopolysaccharide assembly
fig|6666666.229912.peg.1073 CDS AEJL02000041.1 63660 65171 3 + 1512 L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1) / Osmotic adaptation Choline and Betaine Uptake and Betaine Biosynthesis
fig|6666666.229912.peg.1074 CDS AEJL02000041.1 65486 66322 2 + 837 L-proline glycine betaine ABC transport system permease protein ProV (TC 3.A.1.12.1) Choline and Betaine Uptake and Betaine Biosynthesis
fig|6666666.229912.peg.1075 CDS AEJL02000041.1 67070 66375 -2 - 696 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC A Hypothetical Protein Related to Proline Metabolism;
CBSS-630.2.peg.3360
fig|6666666.229912.peg.1076 CDS AEJL02000041.1 68451 67063 -3 - 1389 Nicotinamide phosphoribosyltransferase (EC 2.4.2.12) NAD and NADP cofactor biosynthesis global
fig|6666666.229912.peg.1077 CDS AEJL02000041.1 68590 68721 1 + 132 hypothetical protein - none -
fig|6666666.229912.peg.1078 CDS AEJL02000041.1 68810 71257 2 + 2448 Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) CBSS-216591.1.peg.168;
Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch;
Methionine Biosynthesis;
Threonine and Homoserine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229912.peg.1079 CDS AEJL02000041.1 71270 72214 2 + 945 Homoserine kinase (EC 2.7.1.39) CBSS-269482.1.peg.1294;
Methionine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229912.peg.1080 CDS AEJL02000041.1 72242 72682 2 + 441 hypothetical protein - none -
fig|6666666.229912.peg.1081 CDS AEJL02000041.1 72738 74012 3 + 1275 Threonine synthase (EC 4.2.3.1) Threonine and Homoserine Biosynthesis
fig|6666666.229912.peg.1082 CDS AEJL02000041.1 74071 74790 1 + 720 4@1-phosphopantetheinyl transferase (EC 2.7.8.-) Fatty Acid Biosynthesis FASII
fig|6666666.229912.peg.1083 CDS AEJL02000041.1 74886 76139 3 + 1254 HflK protein Hfl operon;
Scaffold proteins for [4Fe-4S] cluster assembly (MRP family)
fig|6666666.229912.peg.1084 CDS AEJL02000041.1 76139 77026 2 + 888 HflC protein Hfl operon;
Scaffold proteins for [4Fe-4S] cluster assembly (MRP family)
fig|6666666.229912.peg.1085 CDS AEJL02000041.1 77056 77181 1 + 126 hypothetical protein - none -
fig|6666666.229912.peg.1086 CDS AEJL02000041.1 78502 77204 -1 - 1299 Cell division trigger factor (EC 5.2.1.8) Bacterial Cell Division
fig|6666666.229912.peg.1087 CDS AEJL02000041.1 79559 78666 -2 - 894 Tyrosine recombinase XerD - none -
fig|6666666.229912.peg.1088 CDS AEJL02000041.1 80002 79562 -1 - 441 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) A Hypothetical Protein Related to Proline Metabolism;
CBSS-630.2.peg.3360;
Proline Synthesis
fig|6666666.229912.peg.1089 CDS AEJL02000041.1 80065 80976 1 + 912 DNA recombination-dependent growth factor C DNA repair, bacterial
fig|6666666.229912.peg.1090 CDS AEJL02000041.1 81441 81067 -3 - 375 opacity associated protein - none -
fig|6666666.229912.peg.1091 CDS AEJL02000041.1 82825 81503 -1 - 1323 Cell envelope opacity-associated protein A - none -
fig|6666666.229912.peg.1092 CDS AEJL02000041.1 84028 82997 -1 - 1032 Lysyl-lysine 2,3-aminomutase Translation elongation factor P lysylation
fig|6666666.229912.peg.1093 CDS AEJL02000041.1 84093 84614 3 + 522 Translation elongation factor P Translation elongation factor P lysylation;
Translation elongation factors bacterial
fig|6666666.229912.peg.1094 CDS AEJL02000041.1 84945 86321 3 + 1377 Tryptophanase (EC 4.1.99.1) - none -
fig|6666666.229912.peg.1095 CDS AEJL02000041.1 86483 87697 2 + 1215 Tyrosine-specific transport protein - none -
fig|6666666.229912.peg.1096 CDS AEJL02000041.1 88440 87763 -3 - 678 YheO-like PAS domain - none -
fig|6666666.229912.peg.1097 CDS AEJL02000041.1 89009 88503 -2 - 507 Arabinose efflux permease - none -
fig|6666666.229912.peg.1098 CDS AEJL02000041.1 89733 89002 -3 - 732 UDP-2,3-diacylglucosamine diphosphatase (EC 3.6.1.54) KDO2-Lipid A biosynthesis;
Llipid A biosynthesis cluster
fig|6666666.229912.peg.1099 CDS AEJL02000041.1 89844 90587 3 + 744 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229912.peg.1100 CDS AEJL02000041.1 90595 92007 1 + 1413 Putative cell division protein precursor - none -
fig|6666666.229912.peg.1101 CDS AEJL02000041.1 92943 92080 -3 - 864 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229912.peg.1102 CDS AEJL02000041.1 93825 93085 -3 - 741 Pyruvate formate-lyase activating enzyme (EC 1.97.1.4) Fermentations: Mixed acid
fig|6666666.229912.peg.1103 CDS AEJL02000041.1 94345 93971 -1 - 375 Pyruvate formate-lyase (EC 2.3.1.54) Butanol Biosynthesis;
Fermentations: Mixed acid
fig|6666666.229912.peg.1104 CDS AEJL02000042.1 353 793 2 + 441 hypothetical protein - none -
fig|6666666.229912.peg.1105 CDS AEJL02000042.1 934 1740 1 + 807 hypothetical protein - none -
fig|6666666.229912.peg.1106 CDS AEJL02000042.1 1730 3007 2 + 1278 hypothetical protein - none -
fig|6666666.229912.peg.1107 CDS AEJL02000042.1 3009 3764 3 + 756 hypothetical protein - none -
fig|6666666.229912.peg.1108 CDS AEJL02000042.1 3761 4822 2 + 1062 hypothetical protein - none -
fig|6666666.229912.peg.1109 CDS AEJL02000042.1 4830 5813 3 + 984 hypothetical protein - none -
fig|6666666.229912.peg.1110 CDS AEJL02000042.1 5935 5801 -1 - 135 hypothetical protein - none -
fig|6666666.229912.peg.1111 CDS AEJL02000042.1 6274 6429 1 + 156 hypothetical protein - none -
fig|6666666.229912.peg.1112 CDS AEJL02000042.1 6422 8686 2 + 2265 NADP-dependent malic enzyme (EC 1.1.1.40) Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229912.peg.1113 CDS AEJL02000042.1 8830 9474 1 + 645 Manganese superoxide dismutase (EC 1.15.1.1) Oxidative stress;
Protection from Reactive Oxygen Species
fig|6666666.229912.peg.1114 CDS AEJL02000042.1 9885 10676 3 + 792 putative lipoprotein - none -
fig|6666666.229912.peg.1115 CDS AEJL02000042.1 11705 10878 -2 - 828 YpfJ protein, zinc metalloprotease superfamily Broadly distributed proteins not in subsystems
fig|6666666.229912.peg.1116 CDS AEJL02000042.1 11800 12243 1 + 444 FIG00904084: hypothetical protein - none -
fig|6666666.229912.peg.1117 CDS AEJL02000042.1 12929 12333 -2 - 597 Acyl-phosphate:glycerol-3-phosphate O-acyltransferase PlsY Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229912.peg.1118 CDS AEJL02000042.1 13026 13379 3 + 354 Dihydroneopterin aldolase (EC 4.1.2.25) Folate Biosynthesis;
Folate biosynthesis cluster
fig|6666666.229912.peg.1119 CDS AEJL02000042.1 13400 14830 2 + 1431 Transglycosylase, Slt family - none -
fig|6666666.229912.peg.1120 CDS AEJL02000042.1 14841 14987 3 + 147 hypothetical protein - none -
fig|6666666.229912.peg.1121 CDS AEJL02000042.1 15569 15030 -2 - 540 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation Biogenesis of c-type cytochromes;
Periplasmic disulfide interchange
fig|6666666.229912.peg.1122 CDS AEJL02000042.1 17137 15593 -1 - 1545 Na+/H+ antiporter NhaB - none -
fig|6666666.229912.peg.1123 CDS AEJL02000042.1 17332 18063 1 + 732 Transcriptional regulator for fatty acid degradation FadR, GntR family - none -
fig|6666666.229912.peg.1124 CDS AEJL02000042.1 19398 18184 -3 - 1215 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229912.peg.1125 CDS AEJL02000042.1 19515 20819 3 + 1305 Menaquinone-specific isochorismate synthase (EC 5.4.4.2) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229912.peg.1126 CDS AEJL02000042.1 20810 22516 2 + 1707 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase (EC 2.2.1.9) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229912.peg.1127 CDS AEJL02000042.1 22569 23318 3 + 750 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase (EC 4.2.99.20) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229912.peg.1128 CDS AEJL02000042.1 23414 23683 2 + 270 SSU ribosomal protein S15p (S13e) - none -
fig|6666666.229912.peg.1129 CDS AEJL02000042.1 23891 25045 2 + 1155 S-adenosylmethionine synthetase (EC 2.5.1.6) Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229912.peg.1130 CDS AEJL02000043.1 5 487 2 + 483 DNA mismatch repair protein MutS DNA repair, bacterial MutL-MutS system;
DNA repair system including RecA, MutS and a hypothetical protein
fig|6666666.229912.peg.1131 CDS AEJL02000043.1 1511 693 -2 - 819 HMP-PP hydrolase (pyridoxal phosphatase) Cof, detected in genetic screen for thiamin metabolic genes (PMID:15292217) - none -
fig|6666666.229912.peg.1132 CDS AEJL02000043.1 2424 1705 -3 - 720 Lysophospholipase (EC 3.1.1.5) Triacylglycerol metabolism
fig|6666666.229912.peg.1133 CDS AEJL02000043.1 3346 2723 -1 - 624 Lysophospholipase (EC 3.1.1.5) Triacylglycerol metabolism
fig|6666666.229912.peg.1134 CDS AEJL02000043.1 4206 3514 -3 - 693 Metal-dependent hydrolase - none -
fig|6666666.229912.peg.1135 CDS AEJL02000043.1 5564 4224 -2 - 1341 FIG00782214: hypothetical protein - none -
fig|6666666.229912.peg.1136 CDS AEJL02000043.1 6941 5589 -2 - 1353 Low-affinity gluconate/H+ symporter GntU D-gluconate and ketogluconates metabolism
fig|6666666.229912.peg.1137 CDS AEJL02000043.1 7806 7030 -3 - 777 Hydroxypyruvate isomerase (EC 5.3.1.22) Glycerate metabolism
fig|6666666.229912.peg.1138 CDS AEJL02000043.1 8441 7809 -2 - 633 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases - none -
fig|6666666.229912.peg.1139 CDS AEJL02000043.1 9682 8438 -1 - 1245 Predicted pyridoxine biosynthesis protein (probably from glycolaldehide) - none -
fig|6666666.229912.peg.1140 CDS AEJL02000043.1 10506 9685 -3 - 822 D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) Polyhydroxybutyrate metabolism
fig|6666666.229912.peg.1141 CDS AEJL02000043.1 10783 11541 1 + 759 Transcriptional regulators of sugar metabolism - none -
fig|6666666.229912.peg.1142 CDS AEJL02000043.1 11617 11955 1 + 339 Nitrogen regulatory protein P-II Ammonia assimilation
fig|6666666.229912.peg.1143 CDS AEJL02000043.1 12094 13137 1 + 1044 FIG004453: protein YceG like CBSS-323097.3.peg.2594;
Cluster containing Alanyl-tRNA synthetase;
tRNA modification Bacteria
fig|6666666.229912.peg.1144 CDS AEJL02000043.1 13139 13771 2 + 633 Thymidylate kinase (EC 2.7.4.9) pyrimidine conversions
fig|6666666.229912.peg.1145 CDS AEJL02000043.1 13768 14751 1 + 984 DNA polymerase III delta prime subunit (EC 2.7.7.7) - none -
fig|6666666.229912.peg.1146 CDS AEJL02000043.1 14755 15537 1 + 783 Putative deoxyribonuclease YcfH YcfH
fig|6666666.229912.peg.1147 CDS AEJL02000043.1 15569 16093 2 + 525 FIG00696143: hypothetical protein - none -
fig|6666666.229912.peg.1148 CDS AEJL02000043.1 16184 17500 2 + 1317 Magnesium and cobalt efflux protein CorC CBSS-56780.10.peg.1536;
Copper homeostasis: copper tolerance;
Glycyl-tRNA synthetase containing cluster;
Magnesium transport;
tRNA-methylthiotransferase containing cluster
fig|6666666.229912.peg.1149 CDS AEJL02000044.1 2104 1256 -1 - 849 rRNA small subunit methyltransferase I 16S rRNA modification within P site of ribosome;
CBSS-160492.1.peg.550;
Heat shock dnaK gene cluster extended
fig|6666666.229912.peg.1150 CDS AEJL02000044.1 2181 3899 3 + 1719 LppC putative lipoprotein CBSS-160492.1.peg.550
fig|6666666.229912.peg.1151 CDS AEJL02000044.1 3909 4268 3 + 360 Predicted endonuclease distantly related to archaeal Holliday junction resolvase CBSS-160492.1.peg.550
fig|6666666.229912.peg.1152 CDS AEJL02000044.1 4281 4865 3 + 585 Phosphoheptose isomerase (EC 5.3.1.-) CBSS-160492.1.peg.550;
Capsular heptose biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.229912.peg.1153 CDS AEJL02000044.1 4930 5517 1 + 588 21 kDa hemolysin precursor CBSS-160492.1.peg.550
fig|6666666.229912.peg.1154 CDS AEJL02000044.1 6315 5623 -3 - 693 Carbonic anhydrase (EC 4.2.1.1) - none -
fig|6666666.229912.peg.1155 CDS AEJL02000044.1 6532 7602 1 + 1071 Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11) / Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) Cluster Ytf and putative sugar transporter;
Peptide methionine sulfoxide reductase;
Peptide methionine sulfoxide reductase;
Putative sugar ABC transporter (ytf cluster)
fig|6666666.229912.peg.1156 CDS AEJL02000044.1 7606 8247 1 + 642 Cytochrome c-type biogenesis protein CcdA homolog, associated with MetSO reductase Peptide methionine sulfoxide reductase
fig|6666666.229912.peg.1157 CDS AEJL02000044.1 8262 8744 3 + 483 Thiol:disulfide oxidoreductase associated with MetSO reductase Peptide methionine sulfoxide reductase
fig|6666666.229912.peg.1158 CDS AEJL02000044.1 9070 8876 -1 - 195 Mobile element protein - none -
fig|6666666.229912.peg.1159 CDS AEJL02000044.1 9235 9101 -1 - 135 hypothetical protein - none -
fig|6666666.229912.peg.1160 CDS AEJL02000044.1 9445 9242 -1 - 204 Mobile element protein - none -
fig|6666666.229912.peg.1161 CDS AEJL02000044.1 9558 9746 3 + 189 hypothetical protein - none -
fig|6666666.229912.peg.1162 CDS AEJL02000044.1 10028 9882 -2 - 147 hypothetical protein - none -
fig|6666666.229912.peg.1163 CDS AEJL02000044.1 10122 11474 3 + 1353 C4-dicarboxylate transporter DcuC (TC 2.A.61.1.1) Citrate Metabolism, Transport, and Regulation
fig|6666666.229912.peg.1164 CDS AEJL02000044.1 11504 11689 2 + 186 hypothetical protein - none -
fig|6666666.229912.peg.1165 CDS AEJL02000044.1 11730 12002 3 + 273 DNA-damage-inducible protein J DNA repair, bacterial;
Toxin-antitoxin replicon stabilization systems
fig|6666666.229912.peg.1166 CDS AEJL02000044.1 12014 12280 2 + 267 YafQ toxin protein Toxin-antitoxin replicon stabilization systems
fig|6666666.229912.peg.1167 CDS AEJL02000044.1 12312 13871 3 + 1560 GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2) Purine conversions
fig|6666666.229912.peg.1168 CDS AEJL02000044.1 15214 14264 -1 - 951 hypothetical protein - none -
fig|6666666.229912.peg.1169 CDS AEJL02000044.1 15821 15408 -2 - 414 Transthyretin-like periplasmic protein - none -
fig|6666666.229912.peg.1170 CDS AEJL02000044.1 16995 17948 3 + 954 Acetyl-coenzyme A carboxyl transferase alpha chain (EC 6.4.1.2) Fatty Acid Biosynthesis FASII
fig|6666666.229912.peg.1171 CDS AEJL02000044.1 18011 18868 2 + 858 Pyridoxal kinase (EC 2.7.1.35) Pyridoxin (Vitamin B6) Biosynthesis
fig|6666666.229912.peg.1172 CDS AEJL02000044.1 18900 20246 3 + 1347 tRNA(Ile)-lysidine synthetase (EC 6.3.4.19) Cell division-ribosomal stress proteins cluster;
Folate biosynthesis cluster;
tRNA modification Bacteria;
tRNA processing;
tRNAmodification position 34
fig|6666666.229912.peg.1173 CDS AEJL02000044.1 21605 20274 -2 - 1332 Guanine-hypoxanthine permease Purine Utilization
fig|6666666.229912.peg.1174 CDS AEJL02000044.1 22116 21730 -3 - 387 Integral membrane protein - none -
fig|6666666.229912.peg.1175 CDS AEJL02000044.1 22310 23326 2 + 1017 UDP-glucose 4-epimerase (EC 5.1.3.2) Lactose and Galactose Uptake and Utilization;
Rhamnose containing glycans
fig|6666666.229912.peg.1176 CDS AEJL02000044.1 23332 23673 1 + 342 [NiFe] hydrogenase nickel incorporation protein HybF NiFe hydrogenase maturation
fig|6666666.229912.peg.1177 CDS AEJL02000044.1 23680 24969 1 + 1290 AmpG permease Recycling of Peptidoglycan Amino Acids
fig|6666666.229912.peg.1178 CDS AEJL02000044.1 25102 25746 1 + 645 Adenylate kinase (EC 2.7.4.3) Purine conversions
fig|6666666.229912.peg.1179 CDS AEJL02000044.1 25833 25946 3 + 114 hypothetical protein - none -
fig|6666666.229912.peg.1180 CDS AEJL02000044.1 27567 26194 -3 - 1374 DNA repair protein RadA DNA repair, bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229912.peg.1181 CDS AEJL02000044.1 28724 27570 -2 - 1155 Adenylate cyclase (EC 4.6.1.1) cAMP signaling in bacteria
fig|6666666.229912.peg.1182 CDS AEJL02000044.1 28889 29569 2 + 681 Phosphate transport regulator (distant homolog of PhoU) Phosphate metabolism
fig|6666666.229912.peg.1183 CDS AEJL02000044.1 29595 30860 3 + 1266 Probable low-affinity inorganic phosphate transporter Phosphate metabolism
fig|6666666.229912.peg.1184 CDS AEJL02000044.1 30929 31540 2 + 612 SH3 domain protein - none -
fig|6666666.229912.peg.1185 CDS AEJL02000044.1 31540 32817 1 + 1278 tRNA nucleotidyltransferase (EC 2.7.7.21) (EC 2.7.7.25) Polyadenylation bacterial;
tRNA nucleotidyltransferase
fig|6666666.229912.peg.1186 CDS AEJL02000044.1 32879 33505 2 + 627 Outer membrane lipoprotein LolB A Gammaproteobacteria Cluster Relating to Translation;
Lipopolysaccharide assembly;
Lipoprotein sorting system
fig|6666666.229912.peg.1187 CDS AEJL02000044.1 33502 34413 1 + 912 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148) A Gammaproteobacteria Cluster Relating to Translation;
Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.229912.peg.1188 CDS AEJL02000044.1 34454 35404 2 + 951 Ribose-phosphate pyrophosphokinase (EC 2.7.6.1) A Gammaproteobacteria Cluster Relating to Translation;
Pentose phosphate pathway;
Transcription repair cluster
fig|6666666.229912.peg.1189 CDS AEJL02000044.1 35581 35727 1 + 147 hypothetical protein - none -
fig|6666666.229912.peg.1190 CDS AEJL02000044.1 36028 37173 1 + 1146 L-lactate dehydrogenase (EC 1.1.2.3) Lactate utilization;
Respiratory dehydrogenases 1
fig|6666666.229912.peg.1191 CDS AEJL02000044.1 37415 39004 2 + 1590 L-lactate permease Lactate utilization
fig|6666666.229912.peg.1192 CDS AEJL02000044.1 39491 39159 -2 - 333 UPF0265 protein YeeX Broadly distributed proteins not in subsystems
fig|6666666.229912.peg.1193 CDS AEJL02000044.1 39516 39632 3 + 117 hypothetical protein - none -
fig|6666666.229912.peg.1194 CDS AEJL02000044.1 39691 40773 1 + 1083 Phosphoserine aminotransferase (EC 2.6.1.52) Glycine and Serine Utilization;
Pyridoxin (Vitamin B6) Biosynthesis;
Serine Biosynthesis
fig|6666666.229912.peg.1195 CDS AEJL02000044.1 40785 41945 3 + 1161 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) @ Histidinol-phosphate aminotransferase (EC 2.6.1.9) Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229912.peg.1196 CDS AEJL02000044.1 41956 43287 1 + 1332 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229912.peg.1197 CDS AEJL02000044.1 43842 43375 -3 - 468 Ribonuclease HI (EC 3.1.26.4) CBSS-228410.1.peg.134;
CBSS-342610.3.peg.1536;
Ribonuclease H
fig|6666666.229912.peg.1198 CDS AEJL02000044.1 43910 44671 2 + 762 DNA polymerase III epsilon subunit (EC 2.7.7.7) CBSS-228410.1.peg.134;
CBSS-342610.3.peg.1536
fig|6666666.229912.peg.1199 CDS AEJL02000044.1 45123 45377 3 + 255 RelB/StbD replicon stabilization protein (antitoxin to RelE/StbE) Toxin-antitoxin replicon stabilization systems
fig|6666666.229912.peg.1200 CDS AEJL02000044.1 45367 45657 1 + 291 RelE/StbE replicon stabilization toxin Toxin-antitoxin replicon stabilization systems
fig|6666666.229912.peg.1201 CDS AEJL02000044.1 46057 45719 -1 - 339 conserved hypothetical protein - none -
fig|6666666.229912.peg.1202 CDS AEJL02000044.1 46398 46841 3 + 444 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) Ammonia assimilation;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229912.peg.1203 CDS AEJL02000044.1 47013 48401 3 + 1389 Putative protease - none -
fig|6666666.229912.peg.1204 CDS AEJL02000044.1 48523 48636 1 + 114 hypothetical protein - none -
fig|6666666.229912.peg.1205 CDS AEJL02000044.1 48920 49810 2 + 891 transcriptional regulator, putative - none -
fig|6666666.229912.peg.1206 CDS AEJL02000044.1 49951 50235 1 + 285 hypothetical protein - none -
fig|6666666.229912.peg.1207 CDS AEJL02000044.1 50247 51320 3 + 1074 FIG00697578: hypothetical protein - none -
fig|6666666.229912.peg.1208 CDS AEJL02000044.1 51367 53022 1 + 1656 FIG00698381: hypothetical protein - none -
fig|6666666.229912.peg.1209 CDS AEJL02000044.1 53414 54760 2 + 1347 FIG00849539: hypothetical protein - none -
fig|6666666.229912.peg.1210 CDS AEJL02000044.1 55033 55443 1 + 411 ABC-type Fe3+-hydroxamate transport system, periplasmic component - none -
fig|6666666.229912.peg.1211 CDS AEJL02000044.1 55560 56099 3 + 540 hypothetical protein - none -
fig|6666666.229912.peg.1212 CDS AEJL02000044.1 56190 57281 3 + 1092 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) CBSS-211586.1.peg.2832;
Queuosine-Archaeosine Biosynthesis;
Scaffold proteins for [4Fe-4S] cluster assembly (MRP family);
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229912.peg.1213 CDS AEJL02000044.1 58461 57325 -3 - 1137 Periplasmic aromatic amino acid aminotransferase beta precursor (EC 2.6.1.57) Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229912.peg.1214 CDS AEJL02000044.1 58930 60081 1 + 1152 tRNA-guanine transglycosylase (EC 2.4.2.29) CBSS-211586.1.peg.2832;
Queuosine-Archaeosine Biosynthesis;
Scaffold proteins for [4Fe-4S] cluster assembly (MRP family);
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229912.peg.1215 CDS AEJL02000044.1 60373 60672 1 + 300 Preprotein translocase subunit YajC (TC 3.A.5.1.1) CBSS-211586.1.peg.2832
fig|6666666.229912.peg.1216 CDS AEJL02000044.1 60703 62553 1 + 1851 Protein-export membrane protein SecD (TC 3.A.5.1.1) CBSS-211586.1.peg.2832
fig|6666666.229912.peg.1217 CDS AEJL02000044.1 62570 63535 2 + 966 Protein-export membrane protein SecF (TC 3.A.5.1.1) CBSS-211586.1.peg.2832
fig|6666666.229912.peg.1218 CDS AEJL02000044.1 63755 66382 2 + 2628 Iron siderophore receptor protein - none -
fig|6666666.229912.peg.1219 CDS AEJL02000044.1 66601 66461 -1 - 141 hypothetical protein - none -
fig|6666666.229912.peg.1220 CDS AEJL02000044.1 66731 69352 2 + 2622 Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) 5-FCL-like protein;
Butanol Biosynthesis;
Butanol Biosynthesis;
Fermentations: Lactate;
Fermentations: Mixed acid;
Fermentations: Mixed acid;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229912.peg.1221 CDS AEJL02000044.1 70389 69436 -3 - 954 Inositol transport system permease protein Inositol catabolism
fig|6666666.229912.peg.1222 CDS AEJL02000044.1 71945 70440 -2 - 1506 Inositol transport system ATP-binding protein Inositol catabolism
fig|6666666.229912.peg.1223 CDS AEJL02000044.1 72946 72014 -1 - 933 Inositol transport system sugar-binding protein Inositol catabolism
fig|6666666.229912.peg.1224 CDS AEJL02000044.1 73878 73030 -3 - 849 Inositol transport system sugar-binding protein Inositol catabolism
fig|6666666.229912.peg.1225 CDS AEJL02000044.1 75409 74270 -1 - 1140 Myo-inositol 2-dehydrogenase 2 (EC 1.1.1.18) Inositol catabolism
fig|6666666.229912.peg.1226 CDS AEJL02000044.1 77008 75500 -1 - 1509 Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27) Inositol catabolism
fig|6666666.229912.peg.1227 CDS AEJL02000044.1 77225 77338 2 + 114 hypothetical protein - none -
fig|6666666.229912.peg.1228 CDS AEJL02000044.1 77748 79094 3 + 1347 CRISPR-associated protein, Csy1 family CRISPRs
fig|6666666.229912.peg.1229 CDS AEJL02000044.1 79104 80063 3 + 960 CRISPR-associated protein, Csy2 family CRISPRs
fig|6666666.229912.peg.1230 CDS AEJL02000044.1 80063 81073 2 + 1011 CRISPR-associated protein, Csy3 family CRISPRs
fig|6666666.229912.peg.1231 CDS AEJL02000044.1 81076 81639 1 + 564 CRISPR-associated protein, Csy4 family CRISPRs
fig|6666666.229912.peg.1232 CDS AEJL02000044.1 84972 81685 -3 - 3288 CRISPR-associated helicase Cas3, Yersinia-type CRISPRs
fig|6666666.229912.peg.1233 CDS AEJL02000044.1 85715 84969 -2 - 747 CRISPR-associated protein Cas1 CRISPRs
fig|6666666.229912.peg.1234 CDS AEJL02000044.1 86270 86695 2 + 426 Queuosine biosynthesis QueD, PTPS-I Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229912.peg.1235 CDS AEJL02000044.1 86656 87330 1 + 675 Queuosine Biosynthesis QueE Radical SAM Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229912.peg.1236 CDS AEJL02000044.1 87453 88310 3 + 858 FIG137478: Hypothetical protein YbgI - none -
fig|6666666.229912.peg.1237 CDS AEJL02000044.1 88401 89189 3 + 789 Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9) Fatty Acid Biosynthesis FASII
fig|6666666.229912.peg.1238 CDS AEJL02000044.1 89262 91241 3 + 1980 Exoribonuclease II (EC 3.1.13.1) RNA processing and degradation, bacterial
fig|6666666.229912.peg.1239 CDS AEJL02000044.1 91842 91360 -3 - 483 Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1) Oxidative stress;
Oxidative stress;
Oxidative stress
fig|6666666.229912.peg.1240 CDS AEJL02000044.1 92050 92520 1 + 471 Membrane fusion component of tripartite multidrug resistance system Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria
fig|6666666.229912.peg.1241 CDS AEJL02000044.1 92608 93210 1 + 603 Membrane fusion component of tripartite multidrug resistance system Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria
fig|6666666.229912.peg.1242 CDS AEJL02000044.1 93223 94737 1 + 1515 Inner membrane component of tripartite multidrug resistance system Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria
fig|6666666.229912.peg.1243 CDS AEJL02000044.1 94881 95162 3 + 282 HipB protein Persister Cells
fig|6666666.229912.peg.1244 CDS AEJL02000044.1 95295 95116 -3 - 180 hypothetical protein - none -
fig|6666666.229912.peg.1245 CDS AEJL02000044.1 95537 95779 2 + 243 HipA protein Persister Cells
fig|6666666.229912.peg.1246 CDS AEJL02000044.1 96669 95776 -3 - 894 hypothetical protein - none -
fig|6666666.229912.peg.1247 CDS AEJL02000044.1 99600 96736 -3 - 2865 Valyl-tRNA synthetase (EC 6.1.1.9) CBSS-208964.1.peg.3826;
tRNA aminoacylation, Val
fig|6666666.229912.peg.1248 CDS AEJL02000044.1 99986 99672 -2 - 315 RNA-binding domain protein - none -
fig|6666666.229912.peg.1249 CDS AEJL02000044.1 100474 100025 -1 - 450 DNA polymerase III chi subunit (EC 2.7.7.7) CBSS-208964.1.peg.3826
fig|6666666.229912.peg.1250 CDS AEJL02000044.1 100684 102078 1 + 1395 Fumarate hydratase class II (EC 4.2.1.2) TCA Cycle
fig|6666666.229912.peg.1251 CDS AEJL02000044.1 102182 102787 2 + 606 FIG026291: Hypothetical periplasmic protein - none -
fig|6666666.229912.peg.1252 CDS AEJL02000044.1 103030 102839 -1 - 192 hypothetical protein - none -
fig|6666666.229912.peg.1253 CDS AEJL02000044.1 103988 103083 -2 - 906 Ribosomal protein S6 glutaminyl transferase Ribosome biogenesis bacterial
fig|6666666.229912.peg.1254 CDS AEJL02000044.1 104741 104007 -2 - 735 Oxygen-insensitive NADPH nitroreductase (EC 1.-.-.-) - none -
fig|6666666.229912.peg.1255 CDS AEJL02000044.1 104868 105131 3 + 264 Glutaredoxin 1 Glutaredoxins;
Glutathione: Redox cycle
fig|6666666.229912.peg.1256 CDS AEJL02000044.1 105589 105395 -1 - 195 Beta-galactosidase (EC 3.2.1.23) Galactosylceramide and Sulfatide metabolism;
Lactose and Galactose Uptake and Utilization;
Lactose utilization
fig|6666666.229912.peg.1257 CDS AEJL02000044.1 105884 107098 2 + 1215 Tyrosine-specific transport protein - none -
fig|6666666.229912.peg.1258 CDS AEJL02000044.1 108034 107168 -1 - 867 hypothetical protein - none -
fig|6666666.229912.peg.1259 CDS AEJL02000044.1 108378 108034 -3 - 345 hypothetical protein - none -
fig|6666666.229912.peg.1260 CDS AEJL02000044.1 110469 108391 -3 - 2079 hypothetical protein - none -
fig|6666666.229912.peg.1261 CDS AEJL02000044.1 110858 110490 -2 - 369 hypothetical protein - none -
fig|6666666.229912.peg.1262 CDS AEJL02000044.1 111871 110915 -1 - 957 hypothetical protein - none -
fig|6666666.229912.peg.1263 CDS AEJL02000044.1 113234 112539 -2 - 696 L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) L-ascorbate utilization (and related gene clusters)
fig|6666666.229912.peg.1264 CDS AEJL02000044.1 114088 113228 -1 - 861 L-xylulose 5-phosphate 3-epimerase (EC 5.1.3.-) L-ascorbate utilization (and related gene clusters)
fig|6666666.229912.peg.1265 CDS AEJL02000044.1 114878 114129 -2 - 750 Ascorbate utilization transcriptional regulator UlaR, HTH-type L-ascorbate utilization (and related gene clusters)
fig|6666666.229912.peg.1266 CDS AEJL02000044.1 116061 114970 -3 - 1092 Probable L-ascorbate-6-phosphate lactonase UlaG (EC 3.1.1.-) (L-ascorbate utilization protein G) L-ascorbate utilization (and related gene clusters)
fig|6666666.229912.peg.1267 CDS AEJL02000044.1 116407 118179 1 + 1773 Ascorbate-specific PTS system, EIIC component L-ascorbate utilization (and related gene clusters)
fig|6666666.229912.peg.1268 CDS AEJL02000044.1 118234 118695 1 + 462 Ascorbate-specific PTS system, EIIA component (EC 2.7.1.-) L-ascorbate utilization (and related gene clusters)
fig|6666666.229912.peg.1269 CDS AEJL02000044.1 118772 119446 2 + 675 3-keto-L-gulonate 6-phosphate decarboxylase L-ascorbate utilization (and related gene clusters)
fig|6666666.229912.peg.1270 CDS AEJL02000044.1 120168 119515 -3 - 654 hypothetical protein - none -
fig|6666666.229912.peg.1271 CDS AEJL02000044.1 121101 120178 -3 - 924 hypothetical protein - none -
fig|6666666.229912.peg.1272 CDS AEJL02000045.1 18 959 3 + 942 hypothetical protein - none -
fig|6666666.229912.peg.1273 CDS AEJL02000045.1 956 1600 2 + 645 hypothetical protein - none -
fig|6666666.229912.peg.1274 CDS AEJL02000045.1 1792 1923 1 + 132 hypothetical protein - none -
fig|6666666.229912.peg.1275 CDS AEJL02000045.1 2202 4163 3 + 1962 ClpB protein Protein chaperones;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229912.peg.1276 CDS AEJL02000045.1 4124 4795 2 + 672 ClpB protein Protein chaperones;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229912.peg.1277 CDS AEJL02000046.1 2124 1138 -3 - 987 L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1) Selenocysteine metabolism
fig|6666666.229912.peg.1278 CDS AEJL02000046.1 2531 2124 -2 - 408 L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1) Selenocysteine metabolism
fig|6666666.229912.peg.1279 CDS AEJL02000046.1 2681 4396 2 + 1716 Prolyl-tRNA synthetase (EC 6.1.1.15), bacterial type tRNA aminoacylation, Pro
fig|6666666.229912.peg.1280 CDS AEJL02000046.1 4463 4792 2 + 330 Ethidium bromide-methyl viologen resistance protein EmrE - none -
fig|6666666.229912.peg.1281 CDS AEJL02000046.1 4832 5086 2 + 255 YgfY COG2938 - none -
fig|6666666.229912.peg.1282 CDS AEJL02000046.1 5219 5794 2 + 576 RNA polymerase sigma factor RpoE Transcription initiation, bacterial sigma factors
fig|6666666.229912.peg.1283 CDS AEJL02000046.1 6426 7382 3 + 957 Sigma factor RpoE negative regulatory protein RseB precursor Periplasmic Stress Response;
Transcription initiation, bacterial sigma factors
fig|6666666.229912.peg.1284 CDS AEJL02000046.1 7392 7829 3 + 438 Sigma factor RpoE regulatory protein RseC Transcription initiation, bacterial sigma factors
fig|6666666.229912.peg.1285 CDS AEJL02000046.1 7910 8461 2 + 552 Molybdopterin-guanine dinucleotide biosynthesis protein MobB Molybdenum cofactor biosynthesis;
ar-431-EC Molybdopterin-guanine dinucleotide biosynthesis
fig|6666666.229912.peg.1286 CDS AEJL02000046.1 8515 9270 1 + 756 Short chain dehydrogenase - none -
fig|6666666.229912.peg.1287 CDS AEJL02000046.1 10810 9350 -1 - 1461 Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3) Dipeptidases (EC 3.4.13.-);
Recycling of Peptidoglycan Amino Acids
fig|6666666.229912.peg.1288 CDS AEJL02000046.1 10925 11389 2 + 465 Xanthine-guanine phosphoribosyltransferase (EC 2.4.2.22) Purine conversions
fig|6666666.229912.peg.1289 CDS AEJL02000046.1 13821 11479 -3 - 2343 Outer membrane protein Imp, required for envelope biogenesis / Organic solvent tolerance protein precursor Lipopolysaccharide assembly
fig|6666666.229912.peg.1290 CDS AEJL02000046.1 14447 13887 -2 - 561 DNA-3-methyladenine glycosylase (EC 3.2.2.20) CBSS-326442.4.peg.1852;
DNA Repair Base Excision
fig|6666666.229912.peg.1291 CDS AEJL02000046.1 14648 15253 2 + 606 probable integral membrane protein Cj0014c - none -
fig|6666666.229912.peg.1292 CDS AEJL02000046.1 16556 15306 -2 - 1251 Diaminopimelate decarboxylase (EC 4.1.1.20) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229912.peg.1293 CDS AEJL02000046.1 16693 16574 -1 - 120 hypothetical protein - none -
fig|6666666.229912.peg.1294 CDS AEJL02000046.1 16816 17130 1 + 315 Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly Biogenesis of cytochrome c oxidases
fig|6666666.229912.peg.1295 CDS AEJL02000046.1 17127 19016 3 + 1890 ATP-dependent DNA helicase RecQ DNA repair, bacterial RecFOR pathway
fig|6666666.229912.peg.1296 CDS AEJL02000046.1 19113 21533 3 + 2421 DNA gyrase subunit B (EC 5.99.1.3) Cell Division Subsystem including YidCD;
DNA gyrase subunits;
DNA replication cluster 1;
DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.229912.peg.1297 CDS AEJL02000046.1 22502 21588 -2 - 915 Pantothenate kinase (EC 2.7.1.33) Coenzyme A Biosynthesis
fig|6666666.229912.peg.1298 CDS AEJL02000046.1 23235 24419 3 + 1185 Translation elongation factor Tu Translation elongation factors bacterial;
Universal GTPases
fig|6666666.229912.peg.1299 CDS AEJL02000046.1 25424 24483 -2 - 942 Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229912.peg.1300 CDS AEJL02000046.1 25587 27074 3 + 1488 Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229912.peg.1301 CDS AEJL02000046.1 27090 28118 3 + 1029 Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229912.peg.1302 CDS AEJL02000046.1 28124 29590 2 + 1467 L-xylulose/3-keto-L-gulonate kinase (EC 2.7.1.-) L-ascorbate utilization (and related gene clusters)
fig|6666666.229912.peg.1303 CDS AEJL02000046.1 31953 29638 -3 - 2316 Transcription accessory protein (S1 RNA-binding domain) CBSS-243265.1.peg.198;
Cell division-ribosomal stress proteins cluster;
Transcription factors bacterial
fig|6666666.229912.peg.1304 CDS AEJL02000047.1 1525 890 -1 - 636 Endonuclease III (EC 4.2.99.18) DNA Repair Base Excision
fig|6666666.229912.peg.1305 CDS AEJL02000047.1 2457 1672 -3 - 786 Electron transport complex protein RnfE Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229912.peg.1306 CDS AEJL02000047.1 3070 2450 -1 - 621 Electron transport complex protein RnfG Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229912.peg.1307 CDS AEJL02000047.1 4156 3077 -1 - 1080 Electron transport complex protein RnfD Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229912.peg.1308 CDS AEJL02000047.1 4481 4167 -2 - 315 Electron transport complex protein RnfC Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229912.peg.1309 CDS AEJL02000047.1 6970 6380 -1 - 591 Electron transport complex protein RnfB Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229912.peg.1310 CDS AEJL02000047.1 7551 6970 -3 - 582 Electron transport complex protein RnfA Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229912.peg.1311 CDS AEJL02000047.1 8629 7742 -1 - 888 Cell division inhibitor CBSS-83333.1.peg.946;
Persister Cells
fig|6666666.229912.peg.1312 CDS AEJL02000047.1 9120 8653 -3 - 468 Arginine pathway regulatory protein ArgR, repressor of arg regulon Arginine Deiminase Pathway
fig|6666666.229912.peg.1313 CDS AEJL02000047.1 9145 9267 1 + 123 hypothetical protein - none -
fig|6666666.229912.peg.1314 CDS AEJL02000047.1 9383 10318 2 + 936 Malate dehydrogenase (EC 1.1.1.37) Serine-glyoxylate cycle;
TCA Cycle
fig|6666666.229912.peg.1315 CDS AEJL02000047.1 11214 10474 -3 - 741 FIG00698611: hypothetical protein - none -
fig|6666666.229912.peg.1316 CDS AEJL02000047.1 12058 11582 -1 - 477 Branched-chain amino acid aminotransferase (EC 2.6.1.42) Alanine biosynthesis;
Pyruvate Alanine Serine Interconversions
fig|6666666.229912.peg.1317 CDS AEJL02000048.1 191 346 2 + 156 hypothetical protein - none -
fig|6666666.229912.peg.1318 CDS AEJL02000048.1 907 1617 1 + 711 hypothetical protein - none -
fig|6666666.229912.peg.1319 CDS AEJL02000048.1 1800 2744 3 + 945 hypothetical protein - none -
fig|6666666.229912.peg.1320 CDS AEJL02000048.1 3358 3990 1 + 633 hypothetical protein - none -
fig|6666666.229912.peg.1321 CDS AEJL02000048.1 5571 5437 -3 - 135 Mobile element protein - none -
fig|6666666.229912.peg.1322 CDS AEJL02000048.1 5884 5750 -1 - 135 hypothetical protein - none -
fig|6666666.229912.peg.1323 CDS AEJL02000048.1 6187 6366 1 + 180 hypothetical protein - none -
fig|6666666.229912.peg.1324 CDS AEJL02000048.1 8418 7195 -3 - 1224 N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family Chitin and N-acetylglucosamine utilization
fig|6666666.229912.peg.1325 CDS AEJL02000048.1 9784 8480 -1 - 1305 Glutamyl-tRNA reductase (EC 1.2.1.70) A Gammaproteobacteria Cluster Relating to Translation;
Heme and Siroheme Biosynthesis
fig|6666666.229912.peg.1326 CDS AEJL02000048.1 10671 9970 -3 - 702 Hydroxyacylglutathione hydrolase (EC 3.1.2.6) CBSS-228410.1.peg.134;
CBSS-342610.3.peg.1536;
Glutathione: Non-redox reactions;
Methylglyoxal Metabolism
fig|6666666.229912.peg.1327 CDS AEJL02000048.1 10692 11390 3 + 699 FIG005121: SAM-dependent methyltransferase (EC 2.1.1.-) CBSS-228410.1.peg.134;
CBSS-342610.3.peg.1536;
Glutathione: Non-redox reactions
fig|6666666.229912.peg.1328 CDS AEJL02000048.1 11999 11448 -2 - 552 PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69) Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism;
Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229912.peg.1329 CDS AEJL02000048.1 12940 11951 -1 - 990 PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69) Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism;
Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229912.peg.1330 CDS AEJL02000048.1 13466 13128 -2 - 339 FIG00904093: hypothetical protein - none -
fig|6666666.229912.peg.1331 CDS AEJL02000048.1 13642 14847 1 + 1206 Mannose-6-phosphate isomerase (EC 5.3.1.8) Mannose Metabolism
fig|6666666.229912.peg.1332 CDS AEJL02000048.1 14943 16706 3 + 1764 FIG00696060: hypothetical protein - none -
fig|6666666.229912.peg.1333 CDS AEJL02000048.1 16876 17286 1 + 411 probable membrane protein YPO3565 - none -
fig|6666666.229912.peg.1334 CDS AEJL02000048.1 17414 17244 -2 - 171 hypothetical protein - none -
fig|6666666.229912.peg.1335 CDS AEJL02000048.1 17477 18859 2 + 1383 Outer membrane stress sensor protease DegQ, serine protease Periplasmic Stress Response;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229912.peg.1336 CDS AEJL02000048.1 20120 19050 -2 - 1071 Outer membrane protein A precursor Osmoregulation
fig|6666666.229912.peg.1337 CDS AEJL02000048.1 22389 20347 -3 - 2043 Excinuclease ABC subunit B DNA repair, UvrABC system
fig|6666666.229912.peg.1338 CDS AEJL02000048.1 24032 23001 -2 - 1032 putative membrane protein - none -
fig|6666666.229912.peg.1339 CDS AEJL02000048.1 24712 24047 -1 - 666 putative exported protein - none -
fig|6666666.229912.peg.1340 CDS AEJL02000048.1 25049 26761 2 + 1713 ABC transporter ATP-binding protein - none -
fig|6666666.229912.peg.1341 CDS AEJL02000048.1 27752 26865 -2 - 888 putative adhesin/invasin - none -
fig|6666666.229912.peg.1342 CDS AEJL02000048.1 28315 30141 1 + 1827 Topoisomerase IV subunit B (EC 5.99.1.-) DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.229912.peg.1343 CDS AEJL02000048.1 30591 30725 3 + 135 hypothetical protein - none -
fig|6666666.229912.peg.1344 CDS AEJL02000048.1 30733 32988 1 + 2256 Topoisomerase IV subunit A (EC 5.99.1.-) DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.229912.peg.1345 CDS AEJL02000048.1 33272 33883 2 + 612 Glutathione S-transferase (EC 2.5.1.18) Glutathione: Non-redox reactions
fig|6666666.229912.peg.1346 CDS AEJL02000048.1 34772 33948 -2 - 825 Outer membrane protein A precursor Osmoregulation
fig|6666666.229912.peg.1347 CDS AEJL02000048.1 36020 34962 -2 - 1059 Possible protease sohB (EC 3.4.21.-) - none -
fig|6666666.229912.peg.1348 CDS AEJL02000048.1 36213 36803 3 + 591 FMN-dependent NADH-azoreductase - none -
fig|6666666.229912.peg.1349 CDS AEJL02000048.1 38234 36897 -2 - 1338 NADH dehydrogenase (EC 1.6.99.3) Respiratory dehydrogenases 1;
Riboflavin synthesis cluster
fig|6666666.229912.peg.1350 CDS AEJL02000048.1 38953 38411 -1 - 543 Glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Respiratory dehydrogenases 1
fig|6666666.229912.peg.1351 CDS AEJL02000049.1 1198 116 -1 - 1083 Galactose/methyl galactoside ABC transport system, ATP-binding protein MglA (EC 3.6.3.17) Lactose and Galactose Uptake and Utilization
fig|6666666.229912.peg.1352 CDS AEJL02000049.1 1684 1205 -1 - 480 Galactose/methyl galactoside ABC transport system, ATP-binding protein MglA (EC 3.6.3.17) Lactose and Galactose Uptake and Utilization
fig|6666666.229912.peg.1353 CDS AEJL02000049.1 2751 1759 -3 - 993 Galactose/methyl galactoside ABC transport system, D-galactose-binding periplasmic protein MglB (TC 3.A.1.2.3) Bacterial Chemotaxis;
Lactose and Galactose Uptake and Utilization
fig|6666666.229912.peg.1354 CDS AEJL02000049.1 3979 2966 -1 - 1014 Galactose operon repressor, GalR-LacI family of transcriptional regulators Lactose and Galactose Uptake and Utilization
fig|6666666.229912.peg.1355 CDS AEJL02000049.1 4221 5264 3 + 1044 Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10) Lactose and Galactose Uptake and Utilization
fig|6666666.229912.peg.1356 CDS AEJL02000049.1 5332 6486 1 + 1155 Galactokinase (EC 2.7.1.6) Lactose and Galactose Uptake and Utilization
fig|6666666.229912.peg.1357 CDS AEJL02000049.1 6480 7511 3 + 1032 Aldose 1-epimerase (EC 5.1.3.3) Lactose and Galactose Uptake and Utilization;
Maltose and Maltodextrin Utilization
fig|6666666.229912.peg.1358 CDS AEJL02000049.1 9275 7776 -2 - 1500 Putative ATP /GTP binding protein - none -
fig|6666666.229912.peg.1359 CDS AEJL02000049.1 10987 9554 -1 - 1434 2-oxoglutarate/malate translocator - none -
fig|6666666.229912.peg.1360 CDS AEJL02000049.1 12386 10974 -2 - 1413 2-(5@1@1-triphosphoribosyl)-3@1-dephosphocoenzyme-A synthase (EC 2.7.8.25) Citrate Metabolism, Transport, and Regulation
fig|6666666.229912.peg.1361 CDS AEJL02000049.1 14082 12580 -3 - 1503 Citrate lyase alpha chain (EC 4.1.3.6) Citrate Metabolism, Transport, and Regulation
fig|6666666.229912.peg.1362 CDS AEJL02000049.1 14972 14097 -2 - 876 Citrate lyase beta chain (EC 4.1.3.6) Citrate Metabolism, Transport, and Regulation
fig|6666666.229912.peg.1363 CDS AEJL02000049.1 15256 14969 -1 - 288 Citrate lyase gamma chain, acyl carrier protein (EC 4.1.3.6) Citrate Metabolism, Transport, and Regulation;
TCA Cycle
fig|6666666.229912.peg.1364 CDS AEJL02000049.1 16303 15296 -1 - 1008 [Citrate [pro-3S]-lyase] ligase (EC 6.2.1.22) Citrate Metabolism, Transport, and Regulation
fig|6666666.229912.peg.1365 CDS AEJL02000049.1 16469 16341 -2 - 129 hypothetical protein - none -
fig|6666666.229912.peg.1366 CDS AEJL02000049.1 16549 17445 1 + 897 Magnesium and cobalt efflux protein CorC CBSS-56780.10.peg.1536;
Copper homeostasis: copper tolerance;
Glycyl-tRNA synthetase containing cluster;
Magnesium transport;
tRNA-methylthiotransferase containing cluster
fig|6666666.229912.peg.1367 CDS AEJL02000049.1 17837 19381 2 + 1545 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE Copper homeostasis: copper tolerance;
Lipoprotein Biosynthesis;
tRNA-methylthiotransferase containing cluster;
tRNA-methylthiotransferase containing cluster
fig|6666666.229912.peg.1368 CDS AEJL02000049.1 19662 19444 -3 - 219 Translation initiation factor 1 Translation initiation factors bacterial
fig|6666666.229912.peg.1369 CDS AEJL02000049.1 19687 19839 1 + 153 hypothetical protein - none -
fig|6666666.229912.peg.1370 CDS AEJL02000049.1 19882 21189 1 + 1308 Peptidase B (EC 3.4.11.23) Aminopeptidases (EC 3.4.11.-)
fig|6666666.229912.peg.1371 CDS AEJL02000049.1 21201 21626 3 + 426 Nucleoside diphosphate kinase (EC 2.7.4.6) CBSS-498211.3.peg.1415;
Purine conversions;
pyrimidine conversions
fig|6666666.229912.peg.1372 CDS AEJL02000049.1 21762 22907 3 + 1146 Beta-hexosaminidase (EC 3.2.1.52) Chitin and N-acetylglucosamine utilization
fig|6666666.229912.peg.1373 CDS AEJL02000049.1 23015 23170 2 + 156 Mobile element protein - none -
fig|6666666.229912.peg.1374 CDS AEJL02000049.1 23219 23386 2 + 168 hypothetical protein - none -
fig|6666666.229912.peg.1375 CDS AEJL02000049.1 24706 23537 -1 - 1170 Lipoprotein NlpD Stationary phase repair cluster
fig|6666666.229912.peg.1376 CDS AEJL02000049.1 24914 24723 -2 - 192 Cobalamin biosynthesis protein CobN and related Mg-chelatases - none -
fig|6666666.229912.peg.1377 CDS AEJL02000049.1 25504 24929 -1 - 576 FIG139438: lipoprotein B Stationary phase repair cluster
fig|6666666.229912.peg.1378 CDS AEJL02000049.1 26272 25532 -1 - 741 5-nucleotidase SurE (EC 3.1.3.5) @ Exopolyphosphatase (EC 3.6.1.11) Housecleaning nucleoside triphosphate pyrophosphatases;
Phosphate metabolism;
Polyphosphate;
Stationary phase repair cluster
fig|6666666.229912.peg.1379 CDS AEJL02000049.1 27315 26305 -3 - 1011 tRNA pseudouridine 13 synthase (EC 4.2.1.-) Stationary phase repair cluster;
tRNA modification Archaea;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229912.peg.1380 CDS AEJL02000049.1 27791 27312 -2 - 480 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis;
Stationary phase repair cluster
fig|6666666.229912.peg.1381 CDS AEJL02000049.1 28483 27788 -1 - 696 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC 2.7.7.60) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis;
Stationary phase repair cluster
fig|6666666.229912.peg.1382 CDS AEJL02000049.1 28761 28483 -3 - 279 Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage Bacterial Cell Division;
Bacterial Cytoskeleton;
Cell division-ribosomal stress proteins cluster;
Stationary phase repair cluster
fig|6666666.229912.peg.1383 CDS AEJL02000049.1 28913 29587 2 + 675 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) Conserved gene cluster associated with Met-tRNA formyltransferase;
Pentose phosphate pathway;
Riboflavin synthesis cluster
fig|6666666.229912.peg.1384 CDS AEJL02000049.1 29590 30264 1 + 675 Phosphoglycolate phosphatase (EC 3.1.3.18) 2-phosphoglycolate salvage;
Glycolate, glyoxylate interconversions
fig|6666666.229912.peg.1385 CDS AEJL02000049.1 30759 31763 3 + 1005 Tryptophanyl-tRNA synthetase (EC 6.1.1.2) tRNA aminoacylation, Trp
fig|6666666.229912.peg.1386 CDS AEJL02000049.1 32494 31850 -1 - 645 3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster;
riboflavin to FAD
fig|6666666.229912.peg.1387 CDS AEJL02000049.1 33796 33020 -1 - 777 Sodium-dependent transporter - none -
fig|6666666.229912.peg.1388 CDS AEJL02000049.1 34521 33790 -3 - 732 Sodium-dependent transporter - none -
fig|6666666.229912.peg.1389 CDS AEJL02000049.1 34940 35215 2 + 276 tRNA pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses;
tRNA modification Archaea;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229912.peg.1390 CDS AEJL02000049.1 35217 35933 3 + 717 Mg(2+) transport ATPase protein C Magnesium transport
fig|6666666.229912.peg.1391 CDS AEJL02000049.1 36315 36187 -3 - 129 hypothetical protein - none -
fig|6666666.229912.peg.1392 CDS AEJL02000052.1 26 364 2 + 339 Anaerobic dimethyl sulfoxide reductase chain B (EC 1.8.99.-) Anaerobic respiratory reductases
fig|6666666.229912.peg.1393 CDS AEJL02000052.1 366 1205 3 + 840 Anaerobic dimethyl sulfoxide reductase chain C (EC 1.8.99.-) Anaerobic respiratory reductases
fig|6666666.229912.peg.1394 CDS AEJL02000052.1 1239 1853 3 + 615 Putative oxidoreductase component of anaerobic dehydrogenases; Functional role page for Chaperone protein TorD - none -
fig|6666666.229912.peg.1395 CDS AEJL02000052.1 1867 2076 1 + 210 Ferredoxin-type protein NapF (periplasmic nitrate reductase) - none -
fig|6666666.229912.peg.1396 CDS AEJL02000052.1 2221 3126 1 + 906 Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14) Glycyl-tRNA synthetase;
Glycyl-tRNA synthetase containing cluster;
tRNA aminoacylation, Gly
fig|6666666.229912.peg.1397 CDS AEJL02000052.1 3176 3436 2 + 261 Glutaredoxin-related protein Glutaredoxins
fig|6666666.229912.peg.1398 CDS AEJL02000052.1 3476 3784 2 + 309 FIG074102: hypothetical protein - none -
fig|6666666.229912.peg.1399 CDS AEJL02000052.1 3906 4244 3 + 339 FIG074102: hypothetical protein - none -
fig|6666666.229912.peg.1400 CDS AEJL02000052.1 4381 4515 1 + 135 hypothetical protein - none -
fig|6666666.229912.peg.1401 CDS AEJL02000052.1 4563 6431 3 + 1869 ATPase family protein - none -
fig|6666666.229912.peg.1402 CDS AEJL02000052.1 6424 8535 1 + 2112 Glycyl-tRNA synthetase beta chain (EC 6.1.1.14) Glycyl-tRNA synthetase;
Glycyl-tRNA synthetase containing cluster;
tRNA aminoacylation, Gly
fig|6666666.229912.peg.1403 CDS AEJL02000052.1 10238 8604 -2 - 1635 CTP synthase (EC 6.3.4.2) CTP synthase (EC 6.3.4.2) cluster;
pyrimidine conversions
fig|6666666.229912.peg.1404 CDS AEJL02000052.1 10352 11767 2 + 1416 Branched-chain amino acid transport system carrier protein - none -
fig|6666666.229912.peg.1405 CDS AEJL02000052.1 11877 12077 3 + 201 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) / Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) Riboflavin synthesis cluster
fig|6666666.229912.peg.1406 CDS AEJL02000052.1 12848 12264 -2 - 585 NfuA Fe-S protein maturation Biotin biosynthesis Experimental;
DNA uptake cluster
fig|6666666.229912.peg.1407 CDS AEJL02000052.1 13646 12960 -2 - 687 Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy Biotin biosynthesis Experimental;
Biotin synthesis cluster;
CBSS-216591.1.peg.168
fig|6666666.229912.peg.1408 CDS AEJL02000052.1 13792 14604 1 + 813 HMP-PP hydrolase (pyridoxal phosphatase) Cof, detected in genetic screen for thiamin metabolic genes (PMID:15292217) - none -
fig|6666666.229912.peg.1409 CDS AEJL02000052.1 14788 15900 1 + 1113 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch;
Threonine and Homoserine Biosynthesis
fig|6666666.229912.peg.1410 CDS AEJL02000052.1 16588 15974 -1 - 615 Late competence protein ComEA, DNA receptor - none -
fig|6666666.229912.peg.1411 CDS AEJL02000052.1 16820 19390 2 + 2571 ClpB protein Protein chaperones;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229912.peg.1412 CDS AEJL02000052.1 19518 19369 -3 - 150 hypothetical protein - none -
fig|6666666.229912.peg.1413 CDS AEJL02000052.1 19991 19491 -2 - 501 hypothetical protein - none -
fig|6666666.229912.peg.1414 CDS AEJL02000052.1 20174 21202 2 + 1029 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) - none -
fig|6666666.229912.peg.1415 CDS AEJL02000052.1 21202 21381 1 + 180 hypothetical protein - none -
fig|6666666.229912.peg.1416 CDS AEJL02000052.1 21460 22284 1 + 825 Diaminopimelate epimerase (EC 5.1.1.7) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229912.peg.1417 CDS AEJL02000052.1 22294 23184 1 + 891 Tyrosine recombinase XerC - none -
fig|6666666.229912.peg.1418 CDS AEJL02000052.1 23199 23912 3 + 714 Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5@1-phosphoribitylamino)uracil phosphatase Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants
fig|6666666.229912.peg.1419 CDS AEJL02000052.1 24439 24014 -1 - 426 Excinuclease ATPase subunit - none -
fig|6666666.229912.peg.1420 CDS AEJL02000052.1 24820 25563 1 + 744 3-oxoacyl-[ACP] synthase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229912.peg.1421 CDS AEJL02000052.1 25548 26336 3 + 789 FIG018329: 1-acyl-sn-glycerol-3-phosphate acyltransferase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229912.peg.1422 CDS AEJL02000052.1 26314 26577 1 + 264 Acyl carrier protein (ACP1) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229912.peg.1423 CDS AEJL02000052.1 26580 26831 3 + 252 Acyl carrier protein (ACP2) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229912.peg.1424 CDS AEJL02000052.1 26831 28498 2 + 1668 FIGfam138462: Acyl-CoA synthetase, AMP-(fatty) acid ligase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229912.peg.1425 CDS AEJL02000052.1 28524 29069 3 + 546 FIG017861: hypothetical protein Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229912.peg.1426 CDS AEJL02000052.1 29992 30327 1 + 336 FIGfam138462: Acyl-CoA synthetase, AMP-(fatty) acid ligase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229912.peg.1427 CDS AEJL02000052.1 30327 31049 3 + 723 FIG143263: Glycosyl transferase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229912.peg.1428 CDS AEJL02000052.1 31046 31972 2 + 927 Lysophospholipid acyltransferase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229912.peg.1429 CDS AEJL02000052.1 31969 32415 1 + 447 FIG002571: 4-hydroxybenzoyl-CoA thioesterase domain protein Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229912.peg.1430 CDS AEJL02000052.1 32412 32996 3 + 585 FIG027190: Putative transmembrane protein Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229912.peg.1431 CDS AEJL02000052.1 33003 35276 3 + 2274 FIG021862: membrane protein, exporter Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229912.peg.1432 CDS AEJL02000052.1 35406 35885 3 + 480 FIG085779: Lipoprotein Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229912.peg.1433 CDS AEJL02000052.1 35894 36937 2 + 1044 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) FabV like Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229912.peg.1434 CDS AEJL02000052.1 36895 37116 1 + 222 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) FabV like Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229912.peg.1435 CDS AEJL02000052.1 37109 37552 2 + 444 3-hydroxydecanoyl-[ACP] dehydratase (EC 4.2.1.60) Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229912.peg.1436 CDS AEJL02000052.1 37602 38330 3 + 729 3-oxoacyl-[ACP] reductase (EC 1.1.1.100) Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229912.peg.1437 CDS AEJL02000052.1 38383 39531 1 + 1149 FIG138576: 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229912.peg.1438 CDS AEJL02000053.1 1754 450 -2 - 1305 Predicted ATPase (AAA+ superfamily) - none -
fig|6666666.229912.peg.1439 CDS AEJL02000053.1 3491 2160 -2 - 1332 ATP-dependent RNA helicase SrmB - none -
fig|6666666.229912.peg.1440 CDS AEJL02000053.1 3478 3606 1 + 129 hypothetical protein - none -
fig|6666666.229912.peg.1441 CDS AEJL02000053.1 3590 4288 2 + 699 tRNA (adenine37-N(6))-methyltransferase TrmN6 (EC 2.1.1.223) RNA methylation
fig|6666666.229912.peg.1442 CDS AEJL02000053.1 5052 4363 -3 - 690 Ribosyl nicotinamide transporter, PnuC-like NAD and NADP cofactor biosynthesis global
fig|6666666.229912.peg.1443 CDS AEJL02000053.1 5433 6092 3 + 660 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses;
Ribosome biogenesis bacterial;
tRNA modification Bacteria
fig|6666666.229912.peg.1444 CDS AEJL02000053.1 6114 6230 3 + 117 hypothetical protein - none -
fig|6666666.229912.peg.1445 CDS AEJL02000054.1 2004 2126 3 + 123 hypothetical protein - none -
fig|6666666.229912.peg.1446 CDS AEJL02000054.1 2836 2198 -1 - 639 Hypothetical metal-binding enzyme, YcbL homolog CBSS-228400.4.peg.1623
fig|6666666.229912.peg.1447 CDS AEJL02000054.1 3359 2913 -2 - 447 FIG001587: exported protein CBSS-228400.4.peg.1623
fig|6666666.229912.peg.1448 CDS AEJL02000054.1 5046 3538 -3 - 1509 L,D-transpeptidase YcbB CBSS-228400.4.peg.1623
fig|6666666.229912.peg.1449 CDS AEJL02000054.1 7181 5124 -2 - 2058 Tail-specific protease precursor (EC 3.4.21.102) - none -
fig|6666666.229912.peg.1450 CDS AEJL02000054.1 7866 7255 -3 - 612 ProQ: influences osmotic activation of compatible solute ProP - none -
fig|6666666.229912.peg.1451 CDS AEJL02000054.1 8084 9367 2 + 1284 Paraquat-inducible protein A Oxidative stress
fig|6666666.229912.peg.1452 CDS AEJL02000054.1 9330 11987 3 + 2658 Paraquat-inducible protein B Oxidative stress
fig|6666666.229912.peg.1453 CDS AEJL02000054.1 13306 12062 -1 - 1245 Tripeptide aminopeptidase (EC 3.4.11.4) - none -
fig|6666666.229912.peg.1454 CDS AEJL02000054.1 13570 14688 1 + 1119 Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) Polyamine Metabolism
fig|6666666.229912.peg.1455 CDS AEJL02000054.1 14672 15532 2 + 861 Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) Polyamine Metabolism
fig|6666666.229912.peg.1456 CDS AEJL02000054.1 15532 16305 1 + 774 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) Polyamine Metabolism
fig|6666666.229912.peg.1457 CDS AEJL02000054.1 16436 17533 2 + 1098 ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1) Polyamine Metabolism
fig|6666666.229912.peg.1458 CDS AEJL02000054.1 17657 18553 2 + 897 Cytidine deaminase (EC 3.5.4.5) Murein hydrolase regulation and cell death;
pyrimidine conversions;
tRNA modification Bacteria
fig|6666666.229912.peg.1459 CDS AEJL02000054.1 19949 18633 -2 - 1317 Seryl-tRNA synthetase (EC 6.1.1.11) CBSS-326442.4.peg.1852;
Glycine and Serine Utilization;
tRNA aminoacylation, Ser
fig|6666666.229912.peg.1460 CDS AEJL02000054.1 20256 21923 3 + 1668 C4-dicarboxylate transporter DcuB - none -
fig|6666666.229912.peg.1461 CDS AEJL02000054.1 23760 22420 -3 - 1341 FIG065221: Holliday junction DNA helicase CBSS-83333.1.peg.876
fig|6666666.229912.peg.1462 CDS AEJL02000054.1 24390 23773 -3 - 618 Outer membrane lipoprotein carrier protein LolA CBSS-83333.1.peg.876;
Lipopolysaccharide assembly;
Lipoprotein sorting system
fig|6666666.229912.peg.1463 CDS AEJL02000054.1 27227 24483 -2 - 2745 Cell division protein FtsK Bacterial Cell Division;
Bacterial Cytoskeleton;
Bacterial RNA-metabolizing Zn-dependent hydrolases;
CBSS-83333.1.peg.876
fig|6666666.229912.peg.1464 CDS AEJL02000054.1 27710 27231 -2 - 480 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229912.peg.1465 CDS AEJL02000054.1 27824 27997 2 + 174 DNA repair protein RadA DNA repair, bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229912.peg.1466 CDS AEJL02000054.1 29430 28426 -3 - 1005 Biotin synthase (EC 2.8.1.6) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229912.peg.1467 CDS AEJL02000054.1 30123 29476 -3 - 648 Thiamin ABC transporter, ATPase component / Thiamine transport ATP-binding protein thiQ Thiamin biosynthesis
fig|6666666.229912.peg.1468 CDS AEJL02000054.1 31735 30107 -1 - 1629 Thiamin ABC transporter, transmembrane component Thiamin biosynthesis
fig|6666666.229912.peg.1469 CDS AEJL02000054.1 32748 31744 -3 - 1005 Thiamin ABC transporter, substrate-binding component Thiamin biosynthesis
fig|6666666.229912.peg.1470 CDS AEJL02000054.1 33150 32770 -3 - 381 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) - none -
fig|6666666.229912.peg.1471 CDS AEJL02000054.1 34332 34177 -3 - 156 CRISPR-associated protein Cas2 CRISPRs
fig|6666666.229912.peg.1472 CDS AEJL02000054.1 35360 34656 -2 - 705 hypothetical protein - none -
fig|6666666.229912.peg.1473 CDS AEJL02000055.1 17 1348 2 + 1332 Potassium efflux system KefA protein / Small-conductance mechanosensitive channel Potassium homeostasis
fig|6666666.229912.peg.1474 CDS AEJL02000055.1 1370 2443 2 + 1074 Chorismate synthase (EC 4.2.3.5) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229912.peg.1475 CDS AEJL02000055.1 2464 3336 1 + 873 Murein endopeptidase - none -
fig|6666666.229912.peg.1476 CDS AEJL02000055.1 3340 4107 1 + 768 Putative membrane protein YfcA - none -
fig|6666666.229912.peg.1477 CDS AEJL02000055.1 4223 5179 2 + 957 Lipid A biosynthesis (KDO) 2-(lauroyl)-lipid IVA acyltransferase (EC 2.3.1.-) KDO2-Lipid A biosynthesis
fig|6666666.229912.peg.1478 CDS AEJL02000055.1 5201 5812 2 + 612 Adenine phosphoribosyltransferase (EC 2.4.2.7) Purine conversions;
cAMP signaling in bacteria
fig|6666666.229912.peg.1479 CDS AEJL02000055.1 5845 7890 1 + 2046 DNA polymerase III subunits gamma and tau (EC 2.7.7.7) DNA processing cluster
fig|6666666.229912.peg.1480 CDS AEJL02000055.1 7893 8783 3 + 891 hypothetical protein - none -
fig|6666666.229912.peg.1481 CDS AEJL02000055.1 8927 9880 2 + 954 Glycosyltransferase - none -
fig|6666666.229912.peg.1482 CDS AEJL02000055.1 9883 10566 1 + 684 hypothetical protein - none -
fig|6666666.229912.peg.1483 CDS AEJL02000056.1 1619 753 -2 - 867 CRISPR-associated protein, Csd2 family CRISPRs
fig|6666666.229912.peg.1484 CDS AEJL02000056.1 2015 1632 -2 - 384 CRISPR-associated protein, Csd1 family CRISPRs
fig|6666666.229912.peg.1485 CDS AEJL02000056.1 3409 2012 -1 - 1398 CRISPR-associated protein, Csd1 family CRISPRs
fig|6666666.229912.peg.1486 CDS AEJL02000056.1 4080 3406 -3 - 675 CRISPR-associated protein, Cas5d family CRISPRs
fig|6666666.229912.peg.1487 CDS AEJL02000056.1 6912 4195 -3 - 2718 Type III restriction-modification enzyme helicase subunit - none -
fig|6666666.229912.peg.1488 CDS AEJL02000056.1 7943 6909 -2 - 1035 Putative DNA-binding protein in cluster with Type I restriction-modification system Restriction-Modification System
fig|6666666.229912.peg.1489 CDS AEJL02000056.1 8070 7927 -3 - 144 hypothetical protein - none -
fig|6666666.229912.peg.1490 CDS AEJL02000056.1 9806 8070 -2 - 1737 Type III restriction-modification system methylation subunit (EC 2.1.1.72) Restriction-Modification System
fig|6666666.229912.peg.1491 CDS AEJL02000056.1 10761 9820 -3 - 942 FIG00807791: hypothetical protein - none -
fig|6666666.229912.peg.1492 CDS AEJL02000056.1 14245 11369 -1 - 2877 helicase (Snf2/Rad54 family) - none -
fig|6666666.229912.peg.1493 CDS AEJL02000056.1 16169 14382 -2 - 1788 CRISPR-associated helicase Cas3 CRISPRs
fig|6666666.229912.peg.1494 CDS AEJL02000056.1 16634 16200 -2 - 435 CRISPR-associated helicase Cas3 CRISPRs
fig|6666666.229912.peg.1495 CDS AEJL02000056.1 16950 17612 3 + 663 Putative TEGT family carrier/transport protein CBSS-326442.4.peg.1852
fig|6666666.229912.peg.1496 CDS AEJL02000056.1 17698 18027 1 + 330 tRNA 2-thiouridine synthesizing protein E (EC 2.8.1.-) CBSS-326442.4.peg.1852;
Lipoic acid synthesis cluster;
Sulfite reduction-associated complex DsrMKJOP and co-clustering genes
fig|6666666.229912.peg.1497 CDS AEJL02000056.1 18125 19006 2 + 882 Manganese ABC transporter, periplasmic-binding protein SitA - none -
fig|6666666.229912.peg.1498 CDS AEJL02000056.1 19006 19896 1 + 891 Manganese ABC transporter, ATP-binding protein SitB - none -
fig|6666666.229912.peg.1499 CDS AEJL02000056.1 19896 20753 3 + 858 Manganese ABC transporter, inner membrane permease protein SitC - none -
fig|6666666.229912.peg.1500 CDS AEJL02000056.1 20750 21598 2 + 849 Manganese ABC transporter, inner membrane permease protein SitD - none -
fig|6666666.229912.peg.1501 CDS AEJL02000056.1 21845 21573 -2 - 273 Acylphosphate phosphohydrolase (EC 3.6.1.7), putative Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229912.peg.1502 CDS AEJL02000056.1 21990 22670 3 + 681 UPF0319 protein YccT precursor CBSS-83333.1.peg.946
fig|6666666.229912.peg.1503 CDS AEJL02000056.1 22733 23191 2 + 459 Methylglyoxal synthase (EC 4.2.3.3) CBSS-83333.1.peg.946;
Methylglyoxal Metabolism
fig|6666666.229912.peg.1504 CDS AEJL02000056.1 23191 23664 1 + 474 Inner membrane protein YccF CBSS-83333.1.peg.946
fig|6666666.229912.peg.1505 CDS AEJL02000056.1 23673 25814 3 + 2142 Putative efflux (PET) family inner membrane protein YccS CBSS-83333.1.peg.946
fig|6666666.229912.peg.1506 CDS AEJL02000056.1 26317 25811 -1 - 507 FIG001674: hypothetical protein - none -
fig|6666666.229912.peg.1507 CDS AEJL02000056.1 26380 27330 1 + 951 Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p YrdC-YciO-Sua5 protein family
fig|6666666.229912.peg.1508 CDS AEJL02000056.1 28441 27497 -1 - 945 Transketolase, C-terminal section (EC 2.2.1.1) Pentose phosphate pathway
fig|6666666.229912.peg.1509 CDS AEJL02000056.1 29255 28431 -2 - 825 Transketolase, N-terminal section (EC 2.2.1.1) Pentose phosphate pathway
fig|6666666.229912.peg.1510 CDS AEJL02000056.1 30620 29265 -2 - 1356 FIG00732228: membrane protein - none -
fig|6666666.229912.peg.1511 CDS AEJL02000056.1 30906 30637 -3 - 270 Putative sugar phosphotransferase component II B - none -
fig|6666666.229912.peg.1512 CDS AEJL02000056.1 32091 31474 -3 - 618 hypothetical protein - none -
fig|6666666.229912.peg.1513 CDS AEJL02000057.1 324 160 -3 - 165 hypothetical protein - none -
fig|6666666.229912.peg.1514 CDS AEJL02000057.1 522 971 3 + 450 ImpA - none -
fig|6666666.229912.peg.1515 CDS AEJL02000057.1 1377 1204 -3 - 174 hypothetical protein - none -
fig|6666666.229912.peg.1516 CDS AEJL02000057.1 3145 1679 -1 - 1467 Inosine-5@1-monophosphate dehydrogenase (EC 1.1.1.205) / CBS domain Purine conversions;
Purine salvage cluster
fig|6666666.229912.peg.1517 CDS AEJL02000057.1 3287 4219 2 + 933 Biotin-protein ligase (EC 6.3.4.15) Biotin biosynthesis;
Biotin synthesis cluster
fig|6666666.229912.peg.1518 CDS AEJL02000057.1 4306 4509 1 + 204 Osmotically inducible lipoprotein B precursor Osmotic stress cluster
fig|6666666.229912.peg.1519 CDS AEJL02000058.1 5 328 2 + 324 oligopeptide transporter - none -
fig|6666666.229912.peg.1520 CDS AEJL02000058.1 390 818 3 + 429 hypothetical protein - none -
fig|6666666.229912.peg.1521 CDS AEJL02000058.1 856 1665 1 + 810 3@1(2@1),5@1-bisphosphate nucleotidase (EC 3.1.3.7) - none -
fig|6666666.229912.peg.1522 CDS AEJL02000058.1 1688 3247 2 + 1560 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) Entner-Doudoroff Pathway;
Pentose phosphate pathway
fig|6666666.229912.peg.1523 CDS AEJL02000058.1 3500 4198 2 + 699 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type Entner-Doudoroff Pathway;
Pentose phosphate pathway
fig|6666666.229912.peg.1524 CDS AEJL02000059.1 102 281 3 + 180 FIG050068: DNA-binding protein - none -
fig|6666666.229912.peg.1525 CDS AEJL02000059.1 1482 391 -3 - 1092 Integrase - none -
fig|6666666.229912.peg.1526 CDS AEJL02000059.1 2018 2377 2 + 360 Antiholin-like protein LrgA Murein hydrolase regulation and cell death
fig|6666666.229912.peg.1527 CDS AEJL02000059.1 2377 3069 1 + 693 LrgA-associated membrane protein LrgB Murein hydrolase regulation and cell death
fig|6666666.229912.peg.1528 CDS AEJL02000059.1 3071 4423 2 + 1353 Putative dNTP triphosphohydrolase, associated with nucleotidase YfbR Purine conversions;
dNTP triphosphohydrolase protein family
fig|6666666.229912.peg.1529 CDS AEJL02000059.1 4753 4460 -1 - 294 FIG045511: hypothetical antitoxin (to FIG022160: hypothetical toxin) - none -
fig|6666666.229912.peg.1530 CDS AEJL02000059.1 5057 4755 -2 - 303 FIG022160: hypothetical toxin - none -
fig|6666666.229912.peg.1531 CDS AEJL02000059.1 5216 5097 -2 - 120 hypothetical protein - none -
fig|6666666.229912.peg.1532 CDS AEJL02000059.1 5210 7156 2 + 1947 ABC transporter ATP-binding protein - none -
fig|6666666.229912.peg.1533 CDS AEJL02000060.1 8 406 2 + 399 Lipoprotein releasing system transmembrane protein LolC Lipopolysaccharide assembly;
Lipoprotein sorting system
fig|6666666.229912.peg.1534 CDS AEJL02000060.1 421 1107 1 + 687 Lipoprotein releasing system ATP-binding protein LolD Lipopolysaccharide assembly;
Lipoprotein sorting system
fig|6666666.229912.peg.1535 CDS AEJL02000060.1 1107 2357 3 + 1251 Lipoprotein releasing system transmembrane protein LolE Lipopolysaccharide assembly;
Lipoprotein sorting system
fig|6666666.229912.peg.1536 CDS AEJL02000060.1 2458 3537 1 + 1080 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha (EC 2.5.1.54) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229912.peg.1537 CDS AEJL02000060.1 3668 3546 -2 - 123 hypothetical protein - none -
fig|6666666.229912.peg.1538 CDS AEJL02000060.1 3683 5089 2 + 1407 Replicative DNA helicase (EC 3.6.1.-) - none -
fig|6666666.229912.peg.1539 CDS AEJL02000060.1 5113 6195 1 + 1083 Alanine racemase (EC 5.1.1.1) ## biosynthetic Alanine biosynthesis;
Pyruvate Alanine Serine Interconversions
fig|6666666.229912.peg.1540 CDS AEJL02000060.1 6211 7860 1 + 1650 Glucose-6-phosphate isomerase (EC 5.3.1.9) Glycolysis and Gluconeogenesis
fig|6666666.229912.peg.1541 CDS AEJL02000060.1 9065 8181 -2 - 885 hypothetical protein - none -
fig|6666666.229912.peg.1542 CDS AEJL02000060.1 9308 9781 2 + 474 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster
fig|6666666.229912.peg.1543 CDS AEJL02000060.1 9788 10213 2 + 426 Transcription termination protein NusB Riboflavin synthesis cluster;
Transcription factors bacterial
fig|6666666.229912.peg.1544 CDS AEJL02000060.1 10232 11215 2 + 984 Thiamine-monophosphate kinase (EC 2.7.4.16) 5-FCL-like protein;
Riboflavin synthesis cluster;
Thiamin biosynthesis
fig|6666666.229912.peg.1545 CDS AEJL02000060.1 11225 11716 2 + 492 Phosphatidylglycerophosphatase A (EC 3.1.3.27) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Riboflavin synthesis cluster
fig|6666666.229912.peg.1546 CDS AEJL02000060.1 11725 12348 1 + 624 L-lysine permease - none -
fig|6666666.229912.peg.1547 CDS AEJL02000060.1 12370 13182 1 + 813 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229912.peg.1548 CDS AEJL02000060.1 13520 13272 -2 - 249 Ferredoxin Soluble cytochromes and functionally related electron carriers
fig|6666666.229912.peg.1549 CDS AEJL02000060.1 13859 13590 -2 - 270 hypothetical protein - none -
fig|6666666.229912.peg.1550 CDS AEJL02000060.1 15011 13881 -2 - 1131 Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) Ribonucleotide reduction
fig|6666666.229912.peg.1551 CDS AEJL02000060.1 15985 15032 -1 - 954 hypothetical protein - none -
fig|6666666.229912.peg.1552 CDS AEJL02000060.1 17048 15987 -2 - 1062 hypothetical protein - none -
fig|6666666.229912.peg.1553 CDS AEJL02000060.1 19353 17083 -3 - 2271 Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) Ribonucleotide reduction
fig|6666666.229912.peg.1554 CDS AEJL02000060.1 19690 19562 -1 - 129 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) Restriction-Modification System
fig|6666666.229912.peg.1555 CDS AEJL02000060.1 21128 19656 -2 - 1473 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) Restriction-Modification System
fig|6666666.229912.peg.1556 CDS AEJL02000061.1 1011 79 -3 - 933 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229912.peg.1557 CDS AEJL02000061.1 1339 1082 -1 - 258 LSU ribosomal protein L27p CBSS-176279.3.peg.868;
Ribosome LSU bacterial
fig|6666666.229912.peg.1558 CDS AEJL02000061.1 1671 1360 -3 - 312 LSU ribosomal protein L21p CBSS-176279.3.peg.868;
Ribosome LSU bacterial
fig|6666666.229912.peg.1559 CDS AEJL02000061.1 1937 2908 2 + 972 Octaprenyl diphosphate synthase (EC 2.5.1.90) Isoprenoinds for Quinones;
Polyprenyl Diphosphate Biosynthesis
fig|6666666.229912.peg.1560 CDS AEJL02000061.1 2910 3641 3 + 732 FIG053235: Diacylglucosamine hydrolase like Llipid A biosynthesis cluster
fig|6666666.229912.peg.1561 CDS AEJL02000061.1 3806 3657 -2 - 150 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-) CBSS-87626.3.peg.3639;
Ubiquinone Biosynthesis
fig|6666666.229912.peg.1562 CDS AEJL02000061.1 4035 3916 -3 - 120 hypothetical protein - none -
fig|6666666.229912.peg.1563 CDS AEJL02000061.1 4143 5567 3 + 1425 tRNA-i(6)A37 methylthiotransferase Methylthiotransferases;
tRNA-methylthiotransferase containing cluster;
tRNA modification Archaea;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229912.peg.1564 CDS AEJL02000061.1 6191 5625 -2 - 567 Primosomal replication protein N@1@1 - none -
fig|6666666.229912.peg.1565 CDS AEJL02000061.1 7607 6255 -2 - 1353 Histidine permease YuiF - none -
fig|6666666.229912.peg.1566 CDS AEJL02000061.1 8612 7959 -2 - 654 Ribonuclease T (EC 3.1.13.-) tRNA processing
fig|6666666.229912.peg.1567 CDS AEJL02000061.1 9106 8699 -1 - 408 Lactoylglutathione lyase (EC 4.4.1.5) Glutathione: Non-redox reactions;
Methylglyoxal Metabolism
fig|6666666.229912.peg.1568 CDS AEJL02000061.1 11217 9265 -3 - 1953 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229912.peg.1569 CDS AEJL02000061.1 11618 12949 2 + 1332 Glycerol-3-phosphate transporter - none -
fig|6666666.229912.peg.1570 CDS AEJL02000061.1 13092 15659 3 + 2568 FIG00362583: hypothetical protein - none -
fig|6666666.229912.peg.1571 CDS AEJL02000061.1 16464 15739 -3 - 726 tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229912.peg.1572 CDS AEJL02000061.1 17063 16536 -2 - 528 membrane protein, putative - none -
fig|6666666.229912.peg.1573 CDS AEJL02000061.1 17271 19049 3 + 1779 Aspartyl-tRNA synthetase (EC 6.1.1.12) tRNA aminoacylation, Asp and Asn
fig|6666666.229912.peg.1574 CDS AEJL02000063.1 1066 3084 1 + 2019 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) CBSS-354.1.peg.876;
RNA methylation;
Riboflavin, FMN and FAD metabolism in plants;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229912.peg.1575 CDS AEJL02000063.1 3274 6345 1 + 3072 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229912.peg.1576 CDS AEJL02000063.1 7033 6455 -1 - 579 Heat shock protein GrpE GroEL GroES;
Heat shock dnaK gene cluster extended;
Protein chaperones
fig|6666666.229912.peg.1577 CDS AEJL02000063.1 7001 7129 2 + 129 hypothetical protein - none -
fig|6666666.229912.peg.1578 CDS AEJL02000063.1 7174 8091 1 + 918 NAD kinase (EC 2.7.1.23) NAD and NADP cofactor biosynthesis global
fig|6666666.229912.peg.1579 CDS AEJL02000063.1 8165 9841 2 + 1677 DNA repair protein RecN DNA repair, bacterial
fig|6666666.229912.peg.1580 CDS AEJL02000063.1 10556 9909 -2 - 648 Outer membrane protein W precursor - none -
fig|6666666.229912.peg.1581 CDS AEJL02000063.1 10829 11587 2 + 759 Membrane protein involved in the export of O-antigen and teichoic acid - none -
fig|6666666.229912.peg.1582 CDS AEJL02000063.1 11593 12144 1 + 552 Intracellular septation protein IspA CBSS-211586.9.peg.2729;
Intracellular septation in Enterobacteria
fig|6666666.229912.peg.1583 CDS AEJL02000063.1 12148 12618 1 + 471 Acyl-CoA thioesterase YciA, involved in membrane biogenesis CBSS-211586.9.peg.2729;
Intracellular septation in Enterobacteria
fig|6666666.229912.peg.1584 CDS AEJL02000063.1 12621 12917 3 + 297 YciL protein Broadly distributed proteins not in subsystems;
CBSS-211586.9.peg.2729
fig|6666666.229912.peg.1585 CDS AEJL02000063.1 13444 15660 1 + 2217 Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) Murein Hydrolases
fig|6666666.229912.peg.1586 CDS AEJL02000063.1 15693 16001 3 + 309 Transcriptional repressor protein TrpR Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate);
Tryptophan synthesis
fig|6666666.229912.peg.1587 CDS AEJL02000063.1 15979 16752 1 + 774 Monofunctional biosynthetic peptidoglycan transglycosylase (EC 2.4.2.-) Peptidoglycan Biosynthesis
fig|6666666.229912.peg.1588 CDS AEJL02000063.1 17009 16809 -2 - 201 hypothetical protein - none -
fig|6666666.229912.peg.1589 CDS AEJL02000063.1 17080 17226 1 + 147 hypothetical protein - none -
fig|6666666.229912.peg.1590 CDS AEJL02000063.1 17775 17446 -3 - 330 Preprotein translocase subunit SecG (TC 3.A.5.1.1) CBSS-331978.3.peg.2915;
Murein hydrolase regulation and cell death
fig|6666666.229912.peg.1591 CDS AEJL02000063.1 19885 17948 -1 - 1938 DNA topoisomerase III (EC 5.99.1.2) DNA processing cluster;
DNA topoisomerases, Type I, ATP-independent
fig|6666666.229912.peg.1592 CDS AEJL02000063.1 20519 19917 -2 - 603 Recombination protein RecR DNA processing cluster;
DNA repair, bacterial RecFOR pathway
fig|6666666.229912.peg.1593 CDS AEJL02000063.1 21047 20604 -2 - 444 FIG000557: hypothetical protein co-occurring with RecR DNA processing cluster
fig|6666666.229912.peg.1594 CDS AEJL02000063.1 21118 22188 1 + 1071 Phosphoesterase (EC 3.1.-.-) - none -
fig|6666666.229912.peg.1595 CDS AEJL02000063.1 22257 23150 3 + 894 Iron(III) dicitrate transport system, periplasmic iron-binding protein FecB (TC 3.A.1.14.1) - none -
fig|6666666.229912.peg.1596 CDS AEJL02000063.1 23150 24139 2 + 990 Iron(III) dicitrate transport system permease protein FecC (TC 3.A.1.14.1) - none -
fig|6666666.229912.peg.1597 CDS AEJL02000063.1 24139 25122 1 + 984 Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1) - none -
fig|6666666.229912.peg.1598 CDS AEJL02000063.1 25122 25889 3 + 768 Iron(III) dicitrate transport ATP-binding protein FecE (TC 3.A.1.14.1) - none -
fig|6666666.229912.peg.1599 CDS AEJL02000063.1 26926 25955 -1 - 972 Translation elongation factor P Lys34:lysine transferase Translation elongation factor P lysylation
fig|6666666.229912.peg.1600 CDS AEJL02000063.1 26991 27179 3 + 189 hypothetical protein - none -
fig|6666666.229912.peg.1601 CDS AEJL02000063.1 27235 29043 1 + 1809 Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) Serine-glyoxylate cycle;
Succinate dehydrogenase;
TCA Cycle
fig|6666666.229912.peg.1602 CDS AEJL02000063.1 29048 29818 2 + 771 Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) 5-FCL-like protein;
Serine-glyoxylate cycle;
Succinate dehydrogenase;
TCA Cycle
fig|6666666.229912.peg.1603 CDS AEJL02000063.1 29830 30222 1 + 393 Fumarate reductase subunit C Succinate dehydrogenase
fig|6666666.229912.peg.1604 CDS AEJL02000063.1 30232 30576 1 + 345 Fumarate reductase subunit D Succinate dehydrogenase
fig|6666666.229912.peg.1605 CDS AEJL02000063.1 32811 30673 -3 - 2139 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) RNA methylation
fig|6666666.229912.peg.1606 CDS AEJL02000063.1 33082 34110 1 + 1029 Alcohol dehydrogenase (EC 1.1.1.1) 5-FCL-like protein;
Butanol Biosynthesis;
Fermentations: Mixed acid;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229912.peg.1607 CDS AEJL02000063.1 35403 34189 -3 - 1215 ATPase component BioM of energizing module of biotin ECF transporter Biotin biosynthesis;
Biotin synthesis cluster
fig|6666666.229912.peg.1608 CDS AEJL02000063.1 36358 35528 -1 - 831 Queuosine Biosynthesis QueC ATPase Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229912.peg.1609 CDS AEJL02000063.1 36580 37044 1 + 465 FIG00710847: hypothetical protein - none -
fig|6666666.229912.peg.1610 CDS AEJL02000063.1 37017 37844 3 + 828 FIG00711691: hypothetical protein - none -
fig|6666666.229912.peg.1611 CDS AEJL02000063.1 39179 38355 -2 - 825 3@1,5@1-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17) cAMP signaling in bacteria
fig|6666666.229912.peg.1612 CDS AEJL02000063.1 39853 39230 -1 - 624 ADP-ribose pyrophosphatase (EC 3.6.1.13) CBSS-216591.1.peg.168;
NAD and NADP cofactor biosynthesis global;
Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229912.peg.1613 CDS AEJL02000063.1 40779 40099 -3 - 681 FIG009095: D,D-carboxypeptidase family protein CBSS-584.1.peg.1352
fig|6666666.229912.peg.1614 CDS AEJL02000063.1 41914 40781 -1 - 1134 N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18) A Glutathione-dependent Thiol Reductase Associated with a Step in Lysine Biosynthesis;
CBSS-584.1.peg.1352;
Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229912.peg.1615 CDS AEJL02000063.1 42395 42051 -2 - 345 FIG138056: a glutathione-dependent thiol reductase A Glutathione-dependent Thiol Reductase Associated with a Step in Lysine Biosynthesis;
CBSS-584.1.peg.1352
fig|6666666.229912.peg.1616 CDS AEJL02000063.1 44341 42461 -1 - 1881 Chaperone protein HtpG Protein chaperones
fig|6666666.229912.peg.1617 CDS AEJL02000063.1 44503 44375 -1 - 129 hypothetical protein - none -
fig|6666666.229912.peg.1618 CDS AEJL02000063.1 45635 44475 -2 - 1161 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) Chorismate Synthesis;
Chorismate Synthesis;
Phenylalanine and Tyrosine Branches from Chorismate;
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229912.peg.1619 CDS AEJL02000063.1 46751 45834 -2 - 918 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC 3.5.1.108) KDO2-Lipid A biosynthesis
fig|6666666.229912.peg.1620 CDS AEJL02000063.1 48069 46789 -3 - 1281 Cell division protein FtsZ (EC 3.4.24.-) Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ;
cell division core of larger cluster
fig|6666666.229912.peg.1621 CDS AEJL02000063.1 49433 48153 -2 - 1281 Cell division protein FtsA Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ;
cell division core of larger cluster
fig|6666666.229912.peg.1622 CDS AEJL02000063.1 50225 49458 -2 - 768 Cell division protein FtsQ Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ;
cell division core of larger cluster
fig|6666666.229912.peg.1623 CDS AEJL02000063.1 51151 50222 -1 - 930 D-alanine--D-alanine ligase (EC 6.3.2.4) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo;
cell division cluster containing FtsQ
fig|6666666.229912.peg.1624 CDS AEJL02000063.1 52594 51164 -1 - 1431 UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo;
cell division cluster containing FtsQ
fig|6666666.229912.peg.1625 CDS AEJL02000063.1 53729 52665 -2 - 1065 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) Peptidoglycan Biosynthesis;
cell division core of larger cluster
fig|6666666.229912.peg.1626 CDS AEJL02000063.1 54959 53769 -2 - 1191 Cell division protein FtsW Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ
fig|6666666.229912.peg.1627 CDS AEJL02000063.1 56278 54974 -1 - 1305 UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC 6.3.2.9) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo
fig|6666666.229912.peg.1628 CDS AEJL02000063.1 57390 56305 -3 - 1086 Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC 2.7.8.13) Peptidoglycan Biosynthesis
fig|6666666.229912.peg.1629 CDS AEJL02000063.1 58763 57384 -2 - 1380 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase (EC 6.3.2.10) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo
fig|6666666.229912.peg.1630 CDS AEJL02000063.1 60234 58768 -3 - 1467 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo
fig|6666666.229912.peg.1631 CDS AEJL02000063.1 62075 60252 -2 - 1824 Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129) 16S rRNA modification within P site of ribosome;
Bacterial Cell Division;
Bacterial Cytoskeleton;
CBSS-83331.1.peg.3039;
Peptidoglycan Biosynthesis
fig|6666666.229912.peg.1632 CDS AEJL02000063.1 62410 62093 -1 - 318 Cell division protein FtsL 16S rRNA modification within P site of ribosome;
Bacterial Cell Division;
Bacterial Cytoskeleton;
Stationary phase repair cluster
fig|6666666.229912.peg.1633 CDS AEJL02000063.1 63378 62410 -3 - 969 rRNA small subunit methyltransferase H 16S rRNA modification within P site of ribosome;
Bacterial Cell Division
fig|6666666.229912.peg.1634 CDS AEJL02000063.1 63946 63488 -1 - 459 Cell division protein MraZ 16S rRNA modification within P site of ribosome;
Bacterial Cell Division;
Bacterial Cytoskeleton
fig|6666666.229912.peg.1635 CDS AEJL02000063.1 65808 64210 -3 - 1599 Carbon starvation protein A Carbon Starvation
fig|6666666.229912.peg.1636 CDS AEJL02000063.1 67036 66350 -1 - 687 Arginine ABC transporter, permease protein ArtM - none -
fig|6666666.229912.peg.1637 CDS AEJL02000063.1 67698 67036 -3 - 663 Arginine ABC transporter, permease protein ArtQ - none -
fig|6666666.229912.peg.1638 CDS AEJL02000063.1 68422 67703 -1 - 720 Arginine ABC transporter, periplasmic arginine-binding protein ArtI - none -
fig|6666666.229912.peg.1639 CDS AEJL02000063.1 69177 68443 -3 - 735 Arginine ABC transporter, ATP-binding protein ArtP - none -
fig|6666666.229912.peg.1640 CDS AEJL02000063.1 69902 69318 -2 - 585 Phosphoheptose isomerase 1 (EC 5.3.1.-) Capsular heptose biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.229912.peg.1641 CDS AEJL02000063.1 73524 69991 -3 - 3534 Transcription-repair coupling factor Cell division-ribosomal stress proteins cluster;
Transcription factors bacterial;
Transcription repair cluster
fig|6666666.229912.peg.1642 CDS AEJL02000063.1 74092 73919 -1 - 174 hypothetical protein - none -
fig|6666666.229912.peg.1643 CDS AEJL02000063.1 74495 74133 -2 - 363 Predicted P-loop ATPase fused to an acetyltransferase COG1444 tRNA modification Archaea;
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229912.peg.1644 CDS AEJL02000063.1 76054 74495 -1 - 1560 Predicted P-loop ATPase fused to an acetyltransferase COG1444 tRNA modification Archaea;
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229912.peg.1645 CDS AEJL02000063.1 76756 76058 -1 - 699 unknown - none -
fig|6666666.229912.peg.1646 CDS AEJL02000063.1 77382 76918 -3 - 465 Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly CBSS-56780.10.peg.1536;
Glycyl-tRNA synthetase containing cluster;
tRNA-methylthiotransferase containing cluster
fig|6666666.229912.peg.1647 CDS AEJL02000063.1 77983 77870 -1 - 114 hypothetical protein - none -
fig|6666666.229912.peg.1648 CDS AEJL02000063.1 77949 78176 3 + 228 Flp pilus assembly protein, pilin Flp Widespread colonization island
fig|6666666.229912.peg.1649 CDS AEJL02000063.1 78772 78948 1 + 177 Type IV prepilin peptidase TadV/CpaA Widespread colonization island
fig|6666666.229912.peg.1650 CDS AEJL02000063.1 78999 79823 3 + 825 Flp pilus assembly protein RcpC/CpaB Widespread colonization island
fig|6666666.229912.peg.1651 CDS AEJL02000063.1 79945 81207 1 + 1263 Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly Widespread colonization island
fig|6666666.229912.peg.1652 CDS AEJL02000063.1 81204 81707 3 + 504 Flp pilus assembly protein RcpB Widespread colonization island
fig|6666666.229912.peg.1653 CDS AEJL02000063.1 81723 82847 3 + 1125 Type II/IV secretion system ATPase TadZ/CpaE, associated with Flp pilus assembly Widespread colonization island
fig|6666666.229912.peg.1654 CDS AEJL02000063.1 82861 84141 1 + 1281 Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily Widespread colonization island
fig|6666666.229912.peg.1655 CDS AEJL02000063.1 84141 85028 3 + 888 Flp pilus assembly protein TadB Widespread colonization island
fig|6666666.229912.peg.1656 CDS AEJL02000063.1 85025 85891 2 + 867 Type II/IV secretion system protein TadC, associated with Flp pilus assembly Widespread colonization island
fig|6666666.229912.peg.1657 CDS AEJL02000063.1 85881 86642 3 + 762 Flp pilus assembly protein TadD, contains TPR repeat Widespread colonization island
fig|6666666.229912.peg.1658 CDS AEJL02000063.1 87379 87879 1 + 501 Flp pilus assembly surface protein TadF, ATP/GTP-binding motif Widespread colonization island
fig|6666666.229912.peg.1659 CDS AEJL02000063.1 87895 89505 1 + 1611 Protein TadG, associated with Flp pilus assembly Widespread colonization island
fig|6666666.229912.peg.1660 CDS AEJL02000063.1 89673 89912 3 + 240 Protein TadG, associated with Flp pilus assembly Widespread colonization island
fig|6666666.229912.peg.1661 CDS AEJL02000064.1 370 489 1 + 120 hypothetical protein - none -
fig|6666666.229912.peg.1662 CDS AEJL02000064.1 1098 463 -3 - 636 ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA Biogenesis of c-type cytochromes
fig|6666666.229912.peg.1663 CDS AEJL02000064.1 2463 1270 -3 - 1194 Bicyclomycin resistance protein - none -
fig|6666666.229912.peg.1664 CDS AEJL02000064.1 3169 2468 -1 - 702 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses
fig|6666666.229912.peg.1665 CDS AEJL02000066.1 481 125 -1 - 357 DsrE-related protein - none -
fig|6666666.229912.peg.1666 CDS AEJL02000066.1 1436 906 -2 - 531 3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabA form (EC 4.2.1.59) Fatty Acid Biosynthesis FASII
fig|6666666.229912.peg.1667 CDS AEJL02000066.1 3363 1579 -3 - 1785 ATP-dependent protease La (EC 3.4.21.53) Type II Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229912.peg.1668 CDS AEJL02000066.1 3510 3956 3 + 447 Macrodomain Ter protein YcbG - none -
fig|6666666.229912.peg.1669 CDS AEJL02000066.1 4232 4023 -2 - 210 Cold shock protein CspD Cold shock, CspA family of proteins
fig|6666666.229912.peg.1670 CDS AEJL02000066.1 4587 4423 -3 - 165 hypothetical protein - none -
fig|6666666.229912.peg.1671 CDS AEJL02000066.1 5351 4638 -2 - 714 tRNA pseudouridine synthase C (EC 4.2.1.70) RNA pseudouridine syntheses;
tRNA modification Bacteria
fig|6666666.229912.peg.1672 CDS AEJL02000066.1 5536 5348 -1 - 189 Hypothetical protein YqcC (clustered with tRNA pseudouridine synthase C) - none -
fig|6666666.229912.peg.1673 CDS AEJL02000069.1 436 128 -1 - 309 Mobile element protein - none -
fig|6666666.229912.peg.1674 CDS AEJL02000069.1 615 481 -3 - 135 hypothetical protein - none -
fig|6666666.229912.peg.1675 CDS AEJL02000069.1 1750 620 -1 - 1131 hypothetical protein - none -
fig|6666666.229912.peg.1676 CDS AEJL02000069.1 3983 2040 -2 - 1944 hypothetical protein - none -
fig|6666666.229912.peg.1677 CDS AEJL02000069.1 5199 3970 -3 - 1230 hypothetical protein - none -
fig|6666666.229912.peg.1678 CDS AEJL02000069.1 5504 5340 -2 - 165 hypothetical protein - none -
fig|6666666.229912.peg.1679 CDS AEJL02000069.1 6177 5671 -3 - 507 S-ribosylhomocysteine lyase (EC 4.4.1.21) / Autoinducer-2 production protein LuxS Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon);
Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229912.peg.1680 CDS AEJL02000069.1 6874 6389 -1 - 486 Putative membrane protein - none -
fig|6666666.229912.peg.1681 CDS AEJL02000069.1 7482 6877 -3 - 606 Galactoside O-acetyltransferase (EC 2.3.1.18) Lactose utilization
fig|6666666.229912.peg.1682 CDS AEJL02000069.1 8084 7482 -2 - 603 Putative phosphatase YqaB 2-phosphoglycolate salvage
fig|6666666.229912.peg.1683 CDS AEJL02000069.1 8212 8592 1 + 381 FIG00782409: hypothetical protein - none -
fig|6666666.229912.peg.1684 CDS AEJL02000069.1 11123 9108 -2 - 2016 ATP-dependent DNA helicase Rep DNA repair, bacterial UvrD and related helicases
fig|6666666.229912.peg.1685 CDS AEJL02000069.1 11363 11133 -2 - 231 FIG00696102: hypothetical protein - none -
fig|6666666.229912.peg.1686 CDS AEJL02000069.1 12030 11467 -3 - 564 Outer membrane protein 18/16 - none -
fig|6666666.229912.peg.1687 CDS AEJL02000069.1 12247 15048 1 + 2802 DNA polymerase I (EC 2.7.7.7) DNA Repair Base Excision
fig|6666666.229912.peg.1688 CDS AEJL02000069.1 15554 17977 2 + 2424 Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.5.3) - none -
fig|6666666.229912.peg.1689 CDS AEJL02000070.1 1126 158 -1 - 969 FIG002813: LPPG:FO 2-phospho-L-lactate transferase like, CofD-like - none -
fig|6666666.229912.peg.1690 CDS AEJL02000070.1 1484 2497 2 + 1014 Molybdenum cofactor biosynthesis protein MoaA Molybdenum cofactor biosynthesis;
ar-104-EC Molybdenum cofactor biosynthesis moaABCDE
fig|6666666.229912.peg.1691 CDS AEJL02000070.1 2592 3032 3 + 441 Molybdenum cofactor biosynthesis protein MoaC Molybdenum cofactor biosynthesis;
ar-104-EC Molybdenum cofactor biosynthesis moaABCDE
fig|6666666.229912.peg.1692 CDS AEJL02000070.1 3032 3277 2 + 246 Molybdenum cofactor biosynthesis protein MoaD Molybdenum cofactor biosynthesis;
ar-104-EC Molybdenum cofactor biosynthesis moaABCDE
fig|6666666.229912.peg.1693 CDS AEJL02000070.1 3278 3733 2 + 456 Molybdenum cofactor biosynthesis protein MoaE Molybdenum cofactor biosynthesis;
ar-104-EC Molybdenum cofactor biosynthesis moaABCDE
fig|6666666.229912.peg.1694 CDS AEJL02000070.1 3933 4574 3 + 642 Stringent starvation protein A Carbon Starvation
fig|6666666.229912.peg.1695 CDS AEJL02000070.1 4586 5047 2 + 462 Stringent starvation protein B Carbon Starvation
fig|6666666.229912.peg.1696 CDS AEJL02000070.1 6613 5210 -1 - 1404 Asparaginyl-tRNA synthetase (EC 6.1.1.22) tRNA aminoacylation, Asp and Asn;
tRNA modification Archaea
fig|6666666.229912.peg.1697 CDS AEJL02000070.1 6809 8038 2 + 1230 Mlc, transcriptional repressor of MalT (the transcriptional activator of maltose regulon) and manXYZ operon Maltose and Maltodextrin Utilization
fig|6666666.229912.peg.1698 CDS AEJL02000070.1 8115 8843 3 + 729 Dethiobiotin synthetase (EC 6.3.3.3) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229912.peg.1699 CDS AEJL02000070.1 10507 8933 -1 - 1575 Autoinducer 2 (AI-2) kinase LsrK (EC 2.7.1.-) Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229912.peg.1700 CDS AEJL02000070.1 11521 10556 -1 - 966 LsrR, transcriptional repressor of lsr operon Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229912.peg.1701 CDS AEJL02000070.1 11765 13282 2 + 1518 Autoinducer 2 (AI-2) ABC transport system, fused AI2 transporter subunits and ATP-binding component Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229912.peg.1702 CDS AEJL02000070.1 13291 14322 1 + 1032 Autoinducer 2 (AI-2) ABC transport system, membrane channel protein LsrC Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229912.peg.1703 CDS AEJL02000070.1 14336 15340 2 + 1005 Autoinducer 2 (AI-2) ABC transport system, membrane channel protein LsrD Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229912.peg.1704 CDS AEJL02000070.1 15365 16462 2 + 1098 Autoinducer 2 (AI-2) ABC transport system, periplasmic AI-2 binding protein LsrB Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229912.peg.1705 CDS AEJL02000070.1 16481 17359 2 + 879 Autoinducer 2 (AI-2) aldolase LsrF (EC 4.2.1.-) Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229912.peg.1706 CDS AEJL02000070.1 17392 17694 1 + 303 Autoinducer 2 (AI-2) modifying protein LsrG Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229912.peg.1707 CDS AEJL02000070.1 19204 17798 -1 - 1407 Pyruvate kinase (EC 2.7.1.40) Entner-Doudoroff Pathway;
Glycerate metabolism;
Glycolysis and Gluconeogenesis;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229912.peg.1708 CDS AEJL02000070.1 20479 19490 -1 - 990 Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) Ribonucleotide reduction
fig|6666666.229912.peg.1709 CDS AEJL02000070.1 22295 20610 -2 - 1686 Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) Ribonucleotide reduction
fig|6666666.229912.peg.1710 CDS AEJL02000070.1 23377 22571 -1 - 807 Tryptophan synthase alpha chain (EC 4.2.1.20) Auxin biosynthesis;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229912.peg.1711 CDS AEJL02000070.1 24573 23380 -3 - 1194 Tryptophan synthase beta chain (EC 4.2.1.20) Auxin biosynthesis;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229912.peg.1712 CDS AEJL02000070.1 25320 24583 -3 - 738 3-hydroxypropionate dehydrogenase (EC 1.1.1.298) - none -
fig|6666666.229912.peg.1713 CDS AEJL02000070.1 25321 25533 1 + 213 hypothetical protein - none -
fig|6666666.229912.peg.1714 CDS AEJL02000070.1 26039 28483 2 + 2445 Outer membrane receptor for lactoferrin or transferrin, TonB-dependent protein A - none -
fig|6666666.229912.peg.1715 CDS AEJL02000070.1 28875 28678 -3 - 198 hypothetical protein - none -
fig|6666666.229912.peg.1716 CDS AEJL02000070.1 30191 28887 -2 - 1305 Oxaloacetate decarboxylase beta chain (EC 4.1.1.3) Na+ translocating decarboxylases and related biotin-dependent enzymes;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229912.peg.1717 CDS AEJL02000070.1 31998 30202 -3 - 1797 Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3) Na+ translocating decarboxylases and related biotin-dependent enzymes;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229912.peg.1718 CDS AEJL02000070.1 32280 32014 -3 - 267 Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3) Na+ translocating decarboxylases and related biotin-dependent enzymes;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229912.peg.1719 CDS AEJL02000070.1 32943 33062 3 + 120 hypothetical protein - none -
fig|6666666.229912.peg.1720 CDS AEJL02000070.1 33580 33305 -1 - 276 [NiFe] hydrogenase metallocenter assembly protein HybG G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229912.peg.1721 CDS AEJL02000070.1 33896 33729 -2 - 168 hypothetical protein - none -
fig|6666666.229912.peg.1722 CDS AEJL02000070.1 35465 34035 -2 - 1431 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24) Auxin biosynthesis;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis;
Tryptophan synthesis
fig|6666666.229912.peg.1723 CDS AEJL02000070.1 35752 35474 -1 - 279 HigA protein (antitoxin to HigB) Toxin-antitoxin replicon stabilization systems
fig|6666666.229912.peg.1724 CDS AEJL02000070.1 36040 35762 -1 - 279 HigB toxin protein Toxin-antitoxin replicon stabilization systems
fig|6666666.229912.peg.1725 CDS AEJL02000070.1 37136 36135 -2 - 1002 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) Auxin biosynthesis;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229912.peg.1726 CDS AEJL02000070.1 37540 37148 -1 - 393 putative - none -
fig|6666666.229912.peg.1727 CDS AEJL02000070.1 38204 37614 -2 - 591 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229912.peg.1728 CDS AEJL02000070.1 39762 38215 -3 - 1548 Anthranilate synthase, aminase component (EC 4.1.3.27) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229912.peg.1729 CDS AEJL02000070.1 40482 39928 -3 - 555 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC 3.1.3.45) KDO2-Lipid A biosynthesis
fig|6666666.229912.peg.1730 CDS AEJL02000070.1 40817 40482 -2 - 336 Arabinose 5-phosphate isomerase (EC 5.3.1.13) KDO2-Lipid A biosynthesis
fig|6666666.229912.peg.1731 CDS AEJL02000070.1 41416 40826 -1 - 591 Arabinose 5-phosphate isomerase (EC 5.3.1.13) KDO2-Lipid A biosynthesis
fig|6666666.229912.peg.1732 CDS AEJL02000070.1 42099 42974 3 + 876 Probable protease htpX homolog - none -
fig|6666666.229912.peg.1733 CDS AEJL02000070.1 43314 44303 3 + 990 Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20) tRNA aminoacylation, Phe
fig|6666666.229912.peg.1734 CDS AEJL02000070.1 44323 46713 1 + 2391 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) tRNA aminoacylation, Phe
fig|6666666.229912.peg.1735 CDS AEJL02000070.1 46717 47013 1 + 297 Integration host factor alpha subunit DNA structural proteins, bacterial
fig|6666666.229912.peg.1736 CDS AEJL02000070.1 47065 47553 1 + 489 Probable lipoprotein nlpC precursor - none -
fig|6666666.229912.peg.1737 CDS AEJL02000070.1 48073 47720 -1 - 354 hypothetical protein - none -
fig|6666666.229912.peg.1738 CDS AEJL02000070.1 48230 48114 -2 - 117 hypothetical protein - none -
fig|6666666.229912.peg.1739 CDS AEJL02000070.1 49658 48240 -2 - 1419 Outer membrane component of tripartite multidrug resistance system Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria
fig|6666666.229912.peg.1740 CDS AEJL02000070.1 50805 49678 -3 - 1128 ABC-type multidrug transport system, permease component - none -
fig|6666666.229912.peg.1741 CDS AEJL02000070.1 51394 50807 -1 - 588 ABC-type multidrug transport system, permease component - none -
fig|6666666.229912.peg.1742 CDS AEJL02000071.1 28 870 1 + 843 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) DNA Repair Base Excision;
DNA repair, bacterial RecFOR pathway
fig|6666666.229912.peg.1743 CDS AEJL02000071.1 903 1550 3 + 648 Thiol-disulfide isomerase and thioredoxins - none -
fig|6666666.229912.peg.1744 CDS AEJL02000071.1 1567 2259 1 + 693 5@1-methylthioadenosine nucleosidase (EC 3.2.2.16) / S-adenosylhomocysteine nucleosidase (EC 3.2.2.9) Adenosyl nucleosidases;
Adenosyl nucleosidases;
Methionine Biosynthesis;
Methionine Degradation;
Polyamine Metabolism
fig|6666666.229912.peg.1745 CDS AEJL02000071.1 2438 3133 2 + 696 Additional periplasmic component NikK of nickel ECF transporter Transport of Nickel and Cobalt
fig|6666666.229912.peg.1746 CDS AEJL02000071.1 3140 3643 2 + 504 Additional component NikL of nickel ECF transporter Transport of Nickel and Cobalt
fig|6666666.229912.peg.1747 CDS AEJL02000071.1 3643 4296 1 + 654 Substrate-specific component NikM of nickel ECF transporter Transport of Nickel and Cobalt
fig|6666666.229912.peg.1748 CDS AEJL02000071.1 4293 4958 3 + 666 ATPase component NikO of energizing module of nickel ECF transporter Transport of Nickel and Cobalt
fig|6666666.229912.peg.1749 CDS AEJL02000071.1 4955 5578 2 + 624 ATPase component NikO of energizing module of nickel ECF transporter Transport of Nickel and Cobalt
fig|6666666.229912.peg.1750 CDS AEJL02000071.1 5657 6466 2 + 810 [NiFe] hydrogenase nickel incorporation-associated protein HypB G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229912.peg.1751 CDS AEJL02000071.1 6493 7605 1 + 1113 [NiFe] hydrogenase metallocenter assembly protein HypD G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229912.peg.1752 CDS AEJL02000071.1 7605 8618 3 + 1014 [NiFe] hydrogenase metallocenter assembly protein HypE G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229912.peg.1753 CDS AEJL02000071.1 9063 10268 3 + 1206 hypothetical protein - none -
fig|6666666.229912.peg.1754 CDS AEJL02000071.1 13636 12821 -1 - 816 Shikimate 5-dehydrogenase I gamma (EC 1.1.1.25) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229912.peg.1755 CDS AEJL02000071.1 14670 13786 -3 - 885 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) 5-FCL-like protein;
Methionine Biosynthesis;
One-carbon metabolism by tetrahydropterines;
Serine-glyoxylate cycle
fig|6666666.229912.peg.1756 CDS AEJL02000071.1 15912 14845 -3 - 1068 FIG000906: Predicted Permease CBSS-208964.1.peg.3826
fig|6666666.229912.peg.1757 CDS AEJL02000071.1 17035 15917 -1 - 1119 FIG000988: Predicted permease CBSS-208964.1.peg.3826
fig|6666666.229912.peg.1758 CDS AEJL02000071.1 17172 18662 3 + 1491 Cytosol aminopeptidase PepA (EC 3.4.11.1) Aminopeptidases (EC 3.4.11.-);
CBSS-208964.1.peg.3826;
Dehydrogenase complexes
fig|6666666.229912.peg.1759 CDS AEJL02000071.1 19868 18807 -2 - 1062 Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229912.peg.1760 CDS AEJL02000071.1 20583 19855 -3 - 729 Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229912.peg.1761 CDS AEJL02000071.1 21426 20662 -3 - 765 Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229912.peg.1762 CDS AEJL02000071.1 21654 22433 3 + 780 DNA-binding domain of ModE / Molybdate-binding domain of ModE Molybdenum cofactor biosynthesis;
Molybdenum cofactor biosynthesis
fig|6666666.229912.peg.1763 CDS AEJL02000071.1 22600 23997 1 + 1398 Arsenic efflux pump protein Arsenic resistance
fig|6666666.229912.peg.1764 CDS AEJL02000071.1 24660 24064 -3 - 597 Nucleotidase YfbR, HD superfamily Housecleaning nucleoside triphosphate pyrophosphatases
fig|6666666.229912.peg.1765 CDS AEJL02000071.1 25697 24669 -2 - 1029 Outer membrane stress sensor protease DegS Periplasmic Stress Response;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229912.peg.1766 CDS AEJL02000071.1 26830 25706 -1 - 1125 Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster;
Riboflavin synthesis cluster
fig|6666666.229912.peg.1767 CDS AEJL02000071.1 27282 26830 -3 - 453 Ribonucleotide reductase transcriptional regulator NrdR Ribonucleotide reduction
fig|6666666.229912.peg.1768 CDS AEJL02000071.1 28460 27399 -2 - 1062 LSU rRNA 2@1-O-methyl-C2498 methyltransferase RlmM RNA methylation
fig|6666666.229912.peg.1769 CDS AEJL02000071.1 29385 28480 -3 - 906 Glycine cleavage system transcriptional activator GcvA LysR-family proteins in Escherichia coli;
Orphan regulatory proteins
fig|6666666.229912.peg.1770 CDS AEJL02000072.1 869 612 -2 - 258 SSU ribosomal protein S17p (S11e) - none -
fig|6666666.229912.peg.1771 CDS AEJL02000072.1 1060 869 -1 - 192 LSU ribosomal protein L29p (L35e) Ribosome LSU bacterial
fig|6666666.229912.peg.1772 CDS AEJL02000072.1 1470 1060 -3 - 411 LSU ribosomal protein L16p (L10e) Ribosome LSU bacterial
fig|6666666.229912.peg.1773 CDS AEJL02000072.1 2191 1484 -1 - 708 SSU ribosomal protein S3p (S3e) - none -
fig|6666666.229912.peg.1774 CDS AEJL02000072.1 2540 2208 -2 - 333 LSU ribosomal protein L22p (L17e) Ribosome LSU bacterial
fig|6666666.229912.peg.1775 CDS AEJL02000072.1 2697 2551 -3 - 147 SSU ribosomal protein S19p (S15e) - none -
fig|6666666.229912.peg.1776 CDS AEJL02000072.1 3673 2852 -1 - 822 LSU ribosomal protein L2p (L8e) Ribosome LSU bacterial
fig|6666666.229912.peg.1777 CDS AEJL02000072.1 3996 3694 -3 - 303 LSU ribosomal protein L23p (L23Ae) Ribosome LSU bacterial
fig|6666666.229912.peg.1778 CDS AEJL02000072.1 4595 3993 -2 - 603 LSU ribosomal protein L4p (L1e) Ribosome LSU bacterial
fig|6666666.229912.peg.1779 CDS AEJL02000072.1 5237 4611 -2 - 627 LSU ribosomal protein L3p (L3e) Ribosome LSU bacterial
fig|6666666.229912.peg.1780 CDS AEJL02000072.1 5565 5254 -3 - 312 SSU ribosomal protein S10p (S20e) - none -
fig|6666666.229912.peg.1781 CDS AEJL02000072.1 6711 5815 -3 - 897 Transcriptional regulators, LysR family - none -
fig|6666666.229912.peg.1782 CDS AEJL02000072.1 6985 7638 1 + 654 Acetyl-CoA:acetoacetyl-CoA transferase, alpha subunit (EC 2.8.3.8) - none -
fig|6666666.229912.peg.1783 CDS AEJL02000072.1 7650 8315 3 + 666 Acetyl-CoA:acetoacetyl-CoA transferase, beta subunit (EC 2.8.3.8) - none -
fig|6666666.229912.peg.1784 CDS AEJL02000072.1 8318 9661 2 + 1344 Short chain fatty acids transporter Polyhydroxybutyrate metabolism
fig|6666666.229912.peg.1785 CDS AEJL02000072.1 9679 10860 1 + 1182 Acetyl-CoA acetyltransferase (EC 2.3.1.9) Butanol Biosynthesis;
Isoprenoid Biosynthesis;
Polyhydroxybutyrate metabolism;
Serine-glyoxylate cycle
fig|6666666.229912.peg.1786 CDS AEJL02000072.1 11425 10958 -1 - 468 Transcriptional regulator, AsnC family - none -
fig|6666666.229912.peg.1787 CDS AEJL02000072.1 13045 11516 -1 - 1530 Arginine/ornithine antiporter ArcD Arginine Deiminase Pathway;
Polyamine Metabolism
fig|6666666.229912.peg.1788 CDS AEJL02000072.1 14094 13162 -3 - 933 Carbamate kinase (EC 2.7.2.2) Arginine Deiminase Pathway;
Polyamine Metabolism
fig|6666666.229912.peg.1789 CDS AEJL02000072.1 15108 14104 -3 - 1005 Ornithine carbamoyltransferase (EC 2.1.3.3) Arginine Deiminase Pathway
fig|6666666.229912.peg.1790 CDS AEJL02000072.1 15351 16742 3 + 1392 Chloride channel protein - none -
fig|6666666.229912.peg.1791 CDS AEJL02000072.1 16745 17728 2 + 984 tRNA dihydrouridine synthase A - none -
fig|6666666.229912.peg.1792 CDS AEJL02000072.1 18776 17784 -2 - 993 Aspartate--ammonia ligase (EC 6.3.1.1) CBSS-262728.1.peg.1737;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229912.peg.1793 CDS AEJL02000072.1 18942 19394 3 + 453 Regulatory protein AsnC CBSS-262728.1.peg.1737
fig|6666666.229912.peg.1794 CDS AEJL02000072.1 19429 20187 1 + 759 Uridine phosphorylase (EC 2.4.2.3) pyrimidine conversions
fig|6666666.229912.peg.1795 CDS AEJL02000072.1 21383 20322 -2 - 1062 Putative permease PerM (= YfgO) - none -
fig|6666666.229912.peg.1796 CDS AEJL02000072.1 21457 21807 1 + 351 Arsenate reductase (EC 1.20.4.1) Anaerobic respiratory reductases;
Arsenic resistance;
Transcription repair cluster
fig|6666666.229912.peg.1797 CDS AEJL02000072.1 21998 21873 -2 - 126 hypothetical protein - none -
fig|6666666.229912.peg.1798 CDS AEJL02000072.1 22353 21991 -3 - 363 FIG00696564: hypothetical protein - none -
fig|6666666.229912.peg.1799 CDS AEJL02000072.1 22588 22304 -1 - 285 hypothetical protein - none -
fig|6666666.229912.peg.1800 CDS AEJL02000072.1 22799 24130 2 + 1332 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase Methylthiotransferases;
Ribosomal protein S12p Asp methylthiotransferase
fig|6666666.229912.peg.1801 CDS AEJL02000072.1 24255 24659 3 + 405 Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48) LMPTP YfkJ cluster;
Protein deglycation
fig|6666666.229912.peg.1802 CDS AEJL02000072.1 25672 25076 -1 - 597 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) G3E family of P-loop GTPases (metallocenter biosynthesis);
Peptidyl-prolyl cis-trans isomerase;
Potassium homeostasis
fig|6666666.229912.peg.1803 CDS AEJL02000072.1 26486 25767 -2 - 720 probable periplasmic protein NMA1059 - none -
fig|6666666.229912.peg.1804 CDS AEJL02000072.1 26971 26537 -1 - 435 Ribonuclease E inhibitor RraB RNA processing and degradation, bacterial
fig|6666666.229912.peg.1805 CDS AEJL02000072.1 27461 27066 -2 - 396 Large-conductance mechanosensitive channel Potassium homeostasis
fig|6666666.229912.peg.1806 CDS AEJL02000072.1 28947 27571 -3 - 1377 Trk system potassium uptake protein TrkA Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Hyperosmotic potassium uptake;
Potassium homeostasis;
Potassium homeostasis
fig|6666666.229912.peg.1807 CDS AEJL02000072.1 30326 28971 -2 - 1356 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) ## SSU rRNA m5C967 Conserved gene cluster associated with Met-tRNA formyltransferase;
RNA methylation
fig|6666666.229912.peg.1808 CDS AEJL02000072.1 31285 30326 -1 - 960 Methionyl-tRNA formyltransferase (EC 2.1.2.9) Conserved gene cluster associated with Met-tRNA formyltransferase;
Translation initiation factors bacterial
fig|6666666.229912.peg.1809 CDS AEJL02000072.1 31860 31348 -3 - 513 Peptide deformylase (EC 3.5.1.88) Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Translation termination factors bacterial
fig|6666666.229912.peg.1810 CDS AEJL02000073.1 23 478 2 + 456 sodium-dependent transporter - none -
fig|6666666.229912.peg.1811 CDS AEJL02000073.1 1657 854 -1 - 804 Zinc ABC transporter, inner membrane permease protein ZnuB - none -
fig|6666666.229912.peg.1812 CDS AEJL02000073.1 2442 1669 -3 - 774 Zinc ABC transporter, ATP-binding protein ZnuC - none -
fig|6666666.229912.peg.1813 CDS AEJL02000073.1 2630 4162 2 + 1533 Cell wall endopeptidase, family M23/M37 Glutaredoxins
fig|6666666.229912.peg.1814 CDS AEJL02000073.1 4265 4128 -2 - 138 hypothetical protein - none -
fig|6666666.229912.peg.1815 CDS AEJL02000073.1 5027 4269 -2 - 759 Iron(III) dicitrate transport ATP-binding protein FecE (TC 3.A.1.14.1) - none -
fig|6666666.229912.peg.1816 CDS AEJL02000073.1 5962 5039 -1 - 924 Ferric vibriobactin, enterobactin transport system, permease protein VctG (TC 3.A.1.14.6) - none -
fig|6666666.229912.peg.1817 CDS AEJL02000073.1 6935 5970 -2 - 966 Ferric anguibactin transport system permease protein fatD - none -
fig|6666666.229912.peg.1818 CDS AEJL02000073.1 7894 6995 -1 - 900 Iron compound ABC uptake transporter substrate-binding protein PiuA - none -
fig|6666666.229912.peg.1819 CDS AEJL02000073.1 8124 10100 3 + 1977 2@1,3@1-cyclic-nucleotide 2@1-phosphodiesterase (EC 3.1.4.16) Purine conversions;
pyrimidine conversions
fig|6666666.229912.peg.1820 CDS AEJL02000075.1 660 103 -3 - 558 D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase (EC 3.1.1.-) Capsular heptose biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.229912.peg.1821 CDS AEJL02000075.1 856 1893 1 + 1038 Methionine ABC transporter ATP-binding protein Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229912.peg.1822 CDS AEJL02000075.1 1883 2560 2 + 678 Methionine ABC transporter permease protein Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229912.peg.1823 CDS AEJL02000075.1 2595 3437 3 + 843 Methionine ABC transporter substrate-binding protein Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229912.peg.1824 CDS AEJL02000075.1 3543 4040 3 + 498 Phospholipid-binding protein - none -
fig|6666666.229912.peg.1825 CDS AEJL02000075.1 4159 4635 1 + 477 tRNA (cytidine(34)-2@1-O)-methyltransferase (EC 2.1.1.207) Biotin synthesis cluster;
RNA methylation
fig|6666666.229912.peg.1826 CDS AEJL02000075.1 5606 4731 -2 - 876 Membrane protein LAPB - none -
fig|6666666.229912.peg.1827 CDS AEJL02000075.1 5729 5616 -2 - 114 hypothetical protein - none -
fig|6666666.229912.peg.1828 CDS AEJL02000075.1 5739 6353 3 + 615 GTP-binding protein EngB Universal GTPases
fig|6666666.229912.peg.1829 CDS AEJL02000075.1 6468 8003 3 + 1536 MG(2+) CHELATASE FAMILY PROTEIN / ComM-related protein - none -
fig|6666666.229912.peg.1830 CDS AEJL02000075.1 8557 8015 -1 - 543 Putative periplasmic protein YibQ, distant homology with nucleoside diphosphatase and polysaccharide deacetylase CBSS-224911.1.peg.435;
Phosphoglycerate mutase protein family
fig|6666666.229912.peg.1831 CDS AEJL02000075.1 8841 8548 -3 - 294 Putative periplasmic protein YibQ, distant homology with nucleoside diphosphatase and polysaccharide deacetylase CBSS-224911.1.peg.435;
Phosphoglycerate mutase protein family
fig|6666666.229912.peg.1832 CDS AEJL02000075.1 10055 8838 -2 - 1218 Periplasmic septal ring factor with murein hydrolase activity EnvC/YibP CBSS-224911.1.peg.435;
Glutaredoxins;
Phosphoglycerate mutase protein family
fig|6666666.229912.peg.1833 CDS AEJL02000075.1 11963 10305 -2 - 1659 Phosphoglucosamine mutase (EC 5.4.2.10) Sialic Acid Metabolism;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229912.peg.1834 CDS AEJL02000075.1 12270 12953 3 + 684 Phosphoglycerate mutase (EC 5.4.2.1) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis;
Phosphoglycerate mutase protein family
fig|6666666.229912.peg.1835 CDS AEJL02000076.1 378 1376 3 + 999 ABC-type Fe3+ transport system, periplasmic component - none -
fig|6666666.229912.peg.1836 CDS AEJL02000076.1 1398 2477 3 + 1080 Thiamin ABC transporter, ATPase component Thiamin biosynthesis
fig|6666666.229912.peg.1837 CDS AEJL02000076.1 2480 4174 2 + 1695 Ferric iron ABC transporter, permease protein Iron acquisition in Streptococcus
fig|6666666.229912.peg.1838 CDS AEJL02000076.1 4196 5254 2 + 1059 Ferric iron ABC transporter, ATP-binding protein Iron acquisition in Streptococcus
fig|6666666.229912.peg.1839 CDS AEJL02000076.1 5817 5380 -3 - 438 Putative transporting ATPase - none -
fig|6666666.229912.peg.1840 CDS AEJL02000076.1 7965 6013 -3 - 1953 Cell division protein FtsH (EC 3.4.24.-) Bacterial Cell Division;
Cell division-ribosomal stress proteins cluster;
Folate biosynthesis cluster
fig|6666666.229912.peg.1841 CDS AEJL02000076.1 8701 8072 -1 - 630 Cell division protein FtsJ / Ribosomal RNA large subunit methyltransferase E (EC 2.1.1.-) ## LSU rRNA Um2552 Bacterial Cell Division;
RNA methylation
fig|6666666.229912.peg.1842 CDS AEJL02000076.1 9705 8836 -3 - 870 Formyltetrahydrofolate deformylase (EC 3.5.1.10) 5-FCL-like protein;
One-carbon metabolism by tetrahydropterines
fig|6666666.229912.peg.1843 CDS AEJL02000076.1 10140 9742 -3 - 399 DNA-binding protein H-NS - none -
fig|6666666.229912.peg.1844 CDS AEJL02000076.1 10581 12113 3 + 1533 Na+/H+ antiporter - none -
fig|6666666.229912.peg.1845 CDS AEJL02000076.1 12958 12248 -1 - 711 hypothetical protein - none -
fig|6666666.229912.peg.1846 CDS AEJL02000076.1 13641 12964 -3 - 678 FIG00904286: hypothetical protein - none -
fig|6666666.229912.peg.1847 CDS AEJL02000076.1 13782 14135 3 + 354 Putative translation initiation inhibitor, yjgF family - none -
fig|6666666.229912.peg.1848 CDS AEJL02000076.1 14761 14177 -1 - 585 hypothetical protein - none -
fig|6666666.229912.peg.1849 CDS AEJL02000078.1 61 2145 1 + 2085 HrpA-like helicases - none -
fig|6666666.229912.peg.1850 CDS AEJL02000078.1 3266 2232 -2 - 1035 ATPase domain protein - none -
fig|6666666.229912.peg.1851 CDS AEJL02000078.1 3418 3618 1 + 201 hypothetical protein - none -
fig|6666666.229912.peg.1852 CDS AEJL02000078.1 4261 3596 -1 - 666 Phosphoglycolate phosphatase (EC 3.1.3.18) 2-phosphoglycolate salvage;
Glycolate, glyoxylate interconversions
fig|6666666.229912.peg.1853 CDS AEJL02000078.1 4773 4462 -3 - 312 Cytochrome C553 (soluble cytochrome f) Iron transport system including ABC transporter;
Soluble cytochromes and functionally related electron carriers
fig|6666666.229912.peg.1854 CDS AEJL02000078.1 5271 4780 -3 - 492 Possible periplasmic thiredoxin Iron transport system including ABC transporter
fig|6666666.229912.peg.1855 CDS AEJL02000078.1 5932 5261 -1 - 672 Fe2+ ABC transporter, ATP-binding subunit Iron transport system including ABC transporter
fig|6666666.229912.peg.1856 CDS AEJL02000078.1 7073 5934 -2 - 1140 Fe2+ ABC transporter, permease protein 2 Iron transport system including ABC transporter
fig|6666666.229912.peg.1857 CDS AEJL02000078.1 8385 7060 -3 - 1326 Cell division protein FtsX Bacterial Cell Division
fig|6666666.229912.peg.1858 CDS AEJL02000078.1 9818 8388 -2 - 1431 Fe2+ ABC transporter, substrate binding protein Iron transport system including ABC transporter
fig|6666666.229912.peg.1859 CDS AEJL02000078.1 10477 9956 -1 - 522 Periplasmic protein p19 involved in high-affinity Fe2+ transport Iron transport system including ABC transporter
fig|6666666.229912.peg.1860 CDS AEJL02000078.1 12427 10520 -1 - 1908 High-affinity Fe2+/Pb2+ permease precursor Iron transport system including ABC transporter
fig|6666666.229912.peg.1861 CDS AEJL02000078.1 15119 12726 -2 - 2394 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) DNA uptake cluster;
Peptidoglycan Biosynthesis;
Type IV pilus
fig|6666666.229912.peg.1862 CDS AEJL02000078.1 15380 15165 -2 - 216 hypothetical protein - none -
fig|6666666.229912.peg.1863 CDS AEJL02000078.1 15723 15382 -3 - 342 probable iron binding protein from the HesB_IscA_SufA family - none -
fig|6666666.229912.peg.1864 CDS AEJL02000078.1 15857 16657 2 + 801 Methionine aminopeptidase (EC 3.4.11.18) CBSS-312309.3.peg.1965;
Translation termination factors bacterial
fig|6666666.229912.peg.1865 CDS AEJL02000078.1 16729 17202 1 + 474 [Protein-PII] uridylyltransferase (EC 2.7.7.59) Ammonia assimilation;
CBSS-312309.3.peg.1965
fig|6666666.229912.peg.1866 CDS AEJL02000079.1 102 275 3 + 174 hypothetical protein - none -
fig|6666666.229912.peg.1867 CDS AEJL02000080.1 1126 8 -1 - 1119 Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake CBSS-272943.3.peg.1367;
Conserved gene cluster associated with Met-tRNA formyltransferase;
YrdC-YciO-Sua5 protein family
fig|6666666.229912.peg.1868 CDS AEJL02000080.1 1793 1344 -2 - 450 LSU ribosomal protein L9p Primosomal replication protein N clusters with ribosomal proteins;
Ribosome LSU bacterial
fig|6666666.229912.peg.1869 CDS AEJL02000080.1 2039 1809 -2 - 231 SSU ribosomal protein S18p @ SSU ribosomal protein S18p, zinc-independent Primosomal replication protein N clusters with ribosomal proteins
fig|6666666.229912.peg.1870 CDS AEJL02000080.1 2378 2052 -2 - 327 Primosomal replication protein N Primosomal replication protein N clusters with ribosomal proteins
fig|6666666.229912.peg.1871 CDS AEJL02000080.1 2742 2365 -3 - 378 SSU ribosomal protein S6p Primosomal replication protein N clusters with ribosomal proteins
fig|6666666.229912.peg.1872 CDS AEJL02000080.1 3517 2894 -1 - 624 SOS-response repressor and protease LexA (EC 3.4.21.88) DNA repair, bacterial
fig|6666666.229912.peg.1873 CDS AEJL02000080.1 3725 6163 2 + 2439 Glycerol-3-phosphate acyltransferase (EC 2.3.1.15) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229912.peg.1874 CDS AEJL02000080.1 8048 6204 -2 - 1845 Lipid A export ATP-binding/permease protein MsbA - none -
fig|6666666.229912.peg.1875 CDS AEJL02000080.1 9053 8136 -2 - 918 transcriptional regulator MtrA - none -
fig|6666666.229912.peg.1876 CDS AEJL02000080.1 9157 9498 1 + 342 Possible carboxymuconolactone decarboxylase family protein (EC 4.1.1.44) - none -
fig|6666666.229912.peg.1877 CDS AEJL02000080.1 10638 9595 -3 - 1044 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) LOS core oligosaccharide biosynthesis
fig|6666666.229912.peg.1878 CDS AEJL02000080.1 10727 11452 2 + 726 3-deoxy-D-manno-octulosonic acid kinase (EC 2.7.1.-) - none -
fig|6666666.229912.peg.1879 CDS AEJL02000080.1 11995 11501 -1 - 495 Phosphopantetheine adenylyltransferase (EC 2.7.7.3) CBSS-266117.6.peg.1260;
CBSS-269801.1.peg.1715;
Coenzyme A Biosynthesis
fig|6666666.229912.peg.1880 CDS AEJL02000080.1 13279 11996 -1 - 1284 3-deoxy-D-manno-octulosonic-acid transferase (EC 2.-.-.-) KDO2-Lipid A biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.229912.peg.1881 CDS AEJL02000080.1 13378 14139 1 + 762 Lipopolysaccharide biosynthesis glycosyltransferase - none -
fig|6666666.229912.peg.1882 CDS AEJL02000080.1 14493 14197 -3 - 297 HigA protein (antitoxin to HigB) Toxin-antitoxin replicon stabilization systems
fig|6666666.229912.peg.1883 CDS AEJL02000080.1 14785 14510 -1 - 276 HigB toxin protein Toxin-antitoxin replicon stabilization systems
fig|6666666.229912.peg.1884 CDS AEJL02000080.1 16269 14902 -3 - 1368 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229912.peg.1885 CDS AEJL02000080.1 16455 17531 3 + 1077 hypothetical tRNA/rRNA methyltransferase yfiF [EC:2.1.1.-] RNA methylation;
tRNA modification Bacteria
fig|6666666.229912.peg.1886 CDS AEJL02000080.1 17819 17598 -2 - 222 4Fe-4S ferredoxin, iron-sulfur binding - none -
fig|6666666.229912.peg.1887 CDS AEJL02000080.1 17926 18621 1 + 696 Probable ribonuclease HI0526 precursor - none -
fig|6666666.229912.peg.1888 CDS AEJL02000080.1 18738 19901 3 + 1164 Phosphoglycerate kinase (EC 2.7.2.3) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis
fig|6666666.229912.peg.1889 CDS AEJL02000080.1 19966 21045 1 + 1080 Fructose-bisphosphate aldolase class II (EC 4.1.2.13) Glycolysis and Gluconeogenesis
fig|6666666.229912.peg.1890 CDS AEJL02000080.1 21220 21047 -1 - 174 hypothetical protein - none -
fig|6666666.229912.peg.1891 CDS AEJL02000080.1 21254 22396 2 + 1143 O-antigen ligase LOS core oligosaccharide biosynthesis
fig|6666666.229912.peg.1892 CDS AEJL02000080.1 22389 23312 3 + 924 Lysophospholipase L2 (EC 3.1.1.5) Triacylglycerol metabolism
fig|6666666.229912.peg.1893 CDS AEJL02000080.1 24168 23350 -3 - 819 Cof protein, HD superfamily hydrolase Housecleaning nucleoside triphosphate pyrophosphatases
fig|6666666.229912.peg.1894 CDS AEJL02000080.1 24387 25184 3 + 798 Acetolactate synthase large subunit (EC 2.2.1.6) - none -
fig|6666666.229912.peg.1895 CDS AEJL02000080.1 25136 25321 2 + 186 Acetolactate synthase large subunit (EC 2.2.1.6) - none -
fig|6666666.229912.peg.1896 CDS AEJL02000080.1 25526 25410 -2 - 117 hypothetical protein - none -
fig|6666666.229912.peg.1897 CDS AEJL02000081.1 68 202 2 + 135 Nucleoside ABC transporter, periplasmic nucleoside-binding protein - none -
fig|6666666.229912.peg.1898 CDS AEJL02000081.1 220 714 1 + 495 Protein yfbU - none -
fig|6666666.229912.peg.1899 CDS AEJL02000081.1 789 676 -3 - 114 hypothetical protein - none -
fig|6666666.229912.peg.1900 CDS AEJL02000082.1 411 809 3 + 399 hypothetical protein - none -
fig|6666666.229912.peg.1901 CDS AEJL02000082.1 1562 1035 -2 - 528 tRNA-specific adenosine-34 deaminase (EC 3.5.4.-) tRNA modification Bacteria;
tRNA processing;
tRNAmodification position 34
fig|6666666.229912.peg.1902 CDS AEJL02000082.1 2738 1887 -2 - 852 Thymidylate synthase (EC 2.1.1.45) Folate Biosynthesis;
pyrimidine conversions
fig|6666666.229912.peg.1903 CDS AEJL02000082.1 3532 2735 -1 - 798 Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-) Lipoprotein Biosynthesis
fig|6666666.229912.peg.1904 CDS AEJL02000082.1 4338 3541 -3 - 798 Protein of unknown function DUF81 - none -
fig|6666666.229912.peg.1905 CDS AEJL02000082.1 4940 4341 -2 - 600 Adenosine (5@1)-pentaphospho-(5@1@1)-adenosine pyrophosphohydrolase (EC 3.6.1.-) CBSS-224911.1.peg.435;
CBSS-364106.7.peg.3204;
Nudix proteins (nucleoside triphosphate hydrolases);
Phosphoglycerate mutase protein family
fig|6666666.229912.peg.1906 CDS AEJL02000082.1 5160 5579 3 + 420 Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229912.peg.1907 CDS AEJL02000082.1 5590 7098 1 + 1509 Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229912.peg.1908 CDS AEJL02000082.1 7095 8060 3 + 966 Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229912.peg.1909 CDS AEJL02000082.1 8082 8954 3 + 873 Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229912.peg.1910 CDS AEJL02000082.1 9036 9968 3 + 933 Ribokinase (EC 2.7.1.15) D-ribose utilization;
Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.229912.peg.1911 CDS AEJL02000082.1 10276 10067 -1 - 210 Cold shock protein CspA Cold shock, CspA family of proteins
fig|6666666.229912.peg.1912 CDS AEJL02000082.1 12167 10722 -2 - 1446 Glutamyl-tRNA synthetase (EC 6.1.1.17) Heme and Siroheme Biosynthesis;
tRNA aminoacylation, Glu and Gln
fig|6666666.229912.peg.1913 CDS AEJL02000082.1 12858 13646 3 + 789 Mannosyltransferase OCH1 and related enzymes - none -
fig|6666666.229912.peg.1914 CDS AEJL02000082.1 13759 15129 1 + 1371 Argininosuccinate lyase (EC 4.3.2.1) - none -
fig|6666666.229912.peg.1915 CDS AEJL02000082.1 17153 18607 2 + 1455 Catalase (EC 1.11.1.6) Oxidative stress;
Protection from Reactive Oxygen Species
fig|6666666.229912.peg.1916 CDS AEJL02000082.1 18884 20209 2 + 1326 hypothetical protein - none -
fig|6666666.229912.peg.1917 CDS AEJL02000082.1 20202 22436 3 + 2235 hypothetical protein - none -
fig|6666666.229912.peg.1918 CDS AEJL02000082.1 22415 23599 2 + 1185 hypothetical protein - none -
fig|6666666.229912.peg.1919 CDS AEJL02000082.1 27150 23674 -3 - 3477 DNA polymerase III alpha subunit (EC 2.7.7.7) - none -
fig|6666666.229912.peg.1920 CDS AEJL02000082.1 27115 27294 1 + 180 hypothetical protein - none -
fig|6666666.229912.peg.1921 CDS AEJL02000082.1 27349 29136 1 + 1788 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) Biotin biosynthesis;
Biotin synthesis cluster
fig|6666666.229912.peg.1922 CDS AEJL02000082.1 29153 29269 2 + 117 hypothetical protein - none -
fig|6666666.229912.peg.1923 CDS AEJL02000082.1 29931 34520 3 + 4590 Autotransporter adhesin - none -
fig|6666666.229912.peg.1924 CDS AEJL02000082.1 34773 36899 3 + 2127 Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) Ribonucleotide reduction
fig|6666666.229912.peg.1925 CDS AEJL02000082.1 37080 37199 3 + 120 hypothetical protein - none -
fig|6666666.229912.peg.1926 CDS AEJL02000082.1 37501 37968 1 + 468 Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) Ribonucleotide reduction
fig|6666666.229912.peg.1927 CDS AEJL02000082.1 38783 37995 -2 - 789 Putative deoxyribonuclease YjjV Deoxyribose and Deoxynucleoside Catabolism;
YcfH
fig|6666666.229912.peg.1928 CDS AEJL02000082.1 39067 38786 -1 - 282 hypothetical protein - none -
fig|6666666.229912.peg.1929 CDS AEJL02000082.1 39215 39060 -2 - 156 hypothetical protein - none -
fig|6666666.229912.peg.1930 CDS AEJL02000082.1 39833 39309 -2 - 525 Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase;
Queuosine-Archaeosine Biosynthesis
fig|6666666.229912.peg.1931 CDS AEJL02000082.1 39903 41312 3 + 1410 Cysteinyl-tRNA synthetase (EC 6.1.1.16) tRNA aminoacylation, Cys
fig|6666666.229912.peg.1932 CDS AEJL02000082.1 42201 41644 -3 - 558 hypothetical protein - none -
fig|6666666.229912.peg.1933 CDS AEJL02000082.1 45116 42645 -2 - 2472 hypothetical protein - none -
fig|6666666.229912.peg.1934 CDS AEJL02000082.1 45428 45279 -2 - 150 hypothetical protein - none -
fig|6666666.229912.peg.1935 CDS AEJL02000082.1 45994 45518 -1 - 477 hypothetical protein - none -
fig|6666666.229912.peg.1936 CDS AEJL02000083.1 728 1207 2 + 480 Translation initiation factor 3 Translation initiation factors bacterial
fig|6666666.229912.peg.1937 CDS AEJL02000083.1 1414 1208 -1 - 207 hypothetical protein - none -
fig|6666666.229912.peg.1938 CDS AEJL02000083.1 1683 2036 3 + 354 LSU ribosomal protein L20p Ribosome LSU bacterial
fig|6666666.229912.peg.1939 CDS AEJL02000083.1 2922 2803 -3 - 120 hypothetical protein - none -
fig|6666666.229912.peg.1940 CDS AEJL02000083.1 3013 3966 1 + 954 Tagatose 1,6-diphosphate aldolase (EC 4.1.2.40) Lactose and Galactose Uptake and Utilization
fig|6666666.229912.peg.1941 CDS AEJL02000083.1 11436 12332 3 + 897 Acetyl-coenzyme A carboxyl transferase beta chain (EC 6.4.1.2) Fatty Acid Biosynthesis FASII
fig|6666666.229912.peg.1942 CDS AEJL02000083.1 12355 13701 1 + 1347 Dihydrofolate synthase (EC 6.3.2.12) @ Folylpolyglutamate synthase (EC 6.3.2.17) Folate Biosynthesis;
Folate Biosynthesis
fig|6666666.229912.peg.1943 CDS AEJL02000083.1 14399 13758 -2 - 642 Hypothetical, related to broad specificity phosphatases COG0406 CBSS-196164.1.peg.461
fig|6666666.229912.peg.1944 CDS AEJL02000083.1 15918 14461 -3 - 1458 Cardiolipin synthetase (EC 2.7.8.-) Cardiolipin synthesis;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229912.peg.1945 CDS AEJL02000083.1 16840 15932 -1 - 909 Putative surface protein - none -
fig|6666666.229912.peg.1946 CDS AEJL02000083.1 16972 17649 1 + 678 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses;
Ribosome biogenesis bacterial;
tRNA modification Bacteria
fig|6666666.229912.peg.1947 CDS AEJL02000083.1 17694 17870 3 + 177 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229912.peg.1948 CDS AEJL02000083.1 17867 18556 2 + 690 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229912.peg.1949 CDS AEJL02000083.1 18640 18963 1 + 324 Alkylphosphonate utilization operon protein PhnA - none -
fig|6666666.229912.peg.1950 CDS AEJL02000083.1 19080 20621 3 + 1542 Esterase/lipase - none -
fig|6666666.229912.peg.1951 CDS AEJL02000083.1 22249 20876 -1 - 1374 RND efflux system, outer membrane lipoprotein CmeC Multidrug Resistance Efflux Pumps
fig|6666666.229912.peg.1952 CDS AEJL02000083.1 24260 22326 -2 - 1935 Macrolide export ATP-binding/permease protein MacB (EC 3.6.3.-) Multidrug Resistance Efflux Pumps
fig|6666666.229912.peg.1953 CDS AEJL02000083.1 25464 24280 -3 - 1185 Macrolide-specific efflux protein MacA Multidrug Resistance Efflux Pumps
fig|6666666.229912.peg.1954 CDS AEJL02000083.1 25665 27356 3 + 1692 Glutaminyl-tRNA synthetase (EC 6.1.1.18) tRNA aminoacylation, Glu and Gln
fig|6666666.229912.peg.1955 CDS AEJL02000083.1 27617 27754 2 + 138 HigB toxin protein Toxin-antitoxin replicon stabilization systems
fig|6666666.229912.peg.1956 CDS AEJL02000083.1 27764 28060 2 + 297 HigA protein (antitoxin to HigB) Toxin-antitoxin replicon stabilization systems
fig|6666666.229912.peg.1957 CDS AEJL02000083.1 28173 28057 -3 - 117 hypothetical protein - none -
fig|6666666.229912.peg.1958 CDS AEJL02000083.1 28172 28528 2 + 357 YcgN (Fragment) CBSS-243277.1.peg.4359
fig|6666666.229912.peg.1959 CDS AEJL02000084.1 111 356 3 + 246 Exodeoxyribonuclease VII small subunit (EC 3.1.11.6) DNA repair, bacterial;
Purine salvage cluster
fig|6666666.229912.peg.1960 CDS AEJL02000084.1 367 1257 1 + 891 Octaprenyl diphosphate synthase (EC 2.5.1.90) / Dimethylallyltransferase (EC 2.5.1.1) / (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10) / Geranylgeranyl diphosphate synthase (EC 2.5.1.29) Isoprenoid Biosynthesis;
Isoprenoid Biosynthesis;
Isoprenoid Biosynthesis: Interconversions;
Isoprenoinds for Quinones;
Isoprenoinds for Quinones;
Isoprenoinds for Quinones;
Isoprenoinds for Quinones;
Polyprenyl Diphosphate Biosynthesis;
Polyprenyl Diphosphate Biosynthesis;
Polyprenyl Diphosphate Biosynthesis
fig|6666666.229912.peg.1961 CDS AEJL02000084.1 1342 3192 1 + 1851 1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis;
Pyridoxin (Vitamin B6) Biosynthesis;
Thiamin biosynthesis
fig|6666666.229912.peg.1962 CDS AEJL02000084.1 4070 3312 -2 - 759 Galactitol utilization operon repressor - none -
fig|6666666.229912.peg.1963 CDS AEJL02000084.1 5117 4137 -2 - 981 Galactitol-1-phosphate 5-dehydrogenase (EC 1.1.1.251) - none -
fig|6666666.229912.peg.1964 CDS AEJL02000084.1 5814 5140 -3 - 675 PTS system, galactitol-specific IIC component (EC 2.7.1.69) - none -
fig|6666666.229912.peg.1965 CDS AEJL02000086.1 403 191 -1 - 213 33 kDa chaperonin (Heat shock protein 33) (HSP33) CBSS-584.1.peg.3382
fig|6666666.229912.peg.1966 CDS AEJL02000086.1 11684 11538 -2 - 147 hypothetical protein - none -
fig|6666666.229912.peg.1967 CDS AEJL02000086.1 11705 13159 2 + 1455 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) D-gluconate and ketogluconates metabolism;
Pentose phosphate pathway
fig|6666666.229912.peg.1968 CDS AEJL02000086.1 13636 13505 -1 - 132 hypothetical protein - none -
fig|6666666.229912.peg.1969 CDS AEJL02000086.1 14065 13946 -1 - 120 hypothetical protein - none -
fig|6666666.229912.peg.1970 CDS AEJL02000086.1 14067 15014 3 + 948 Magnesium and cobalt transport protein CorA Magnesium transport
fig|6666666.229912.peg.1971 CDS AEJL02000086.1 15030 15590 3 + 561 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) CBSS-630.2.peg.3360
fig|6666666.229912.peg.1972 CDS AEJL02000086.1 15615 15908 3 + 294 COG1872 - none -
fig|6666666.229912.peg.1973 CDS AEJL02000086.1 16025 16684 2 + 660 Oxygen-insensitive NAD(P)H nitroreductase (EC 1.-.-.-) / Dihydropteridine reductase (EC 1.5.1.34) - none -
fig|6666666.229912.peg.1974 CDS AEJL02000086.1 16927 17451 1 + 525 Phosphoglycerol transferase I (EC 2.7.8.20) Synthesis of osmoregulated periplasmic glucans
fig|6666666.229912.peg.1975 CDS AEJL02000086.1 17494 18723 1 + 1230 Phosphoglycerol transferase I (EC 2.7.8.20) Synthesis of osmoregulated periplasmic glucans
fig|6666666.229912.peg.1976 CDS AEJL02000086.1 19169 19026 -2 - 144 hypothetical protein - none -
fig|6666666.229912.peg.1977 CDS AEJL02000086.1 20089 19940 -1 - 150 hypothetical protein - none -
fig|6666666.229912.peg.1978 CDS AEJL02000086.1 21195 20458 -3 - 738 COG1496: Uncharacterized conserved protein - none -
fig|6666666.229912.peg.1979 CDS AEJL02000086.1 22171 21197 -1 - 975 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) RNA pseudouridine syntheses;
Ribosome biogenesis bacterial
fig|6666666.229912.peg.1980 CDS AEJL02000086.1 22278 23066 3 + 789 Probable component of the lipoprotein assembly complex (forms a complex with YaeT, YfgL, and NlpB) Lipopolysaccharide assembly
fig|6666666.229912.peg.1981 CDS AEJL02000086.1 23679 23104 -3 - 576 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) 5-FCL-like protein;
Folate Biosynthesis;
One-carbon metabolism by tetrahydropterines;
Serine-glyoxylate cycle
fig|6666666.229912.peg.1982 CDS AEJL02000086.1 24278 23973 -2 - 306 Z-ring-associated protein ZapA Bacterial Cytoskeleton
fig|6666666.229912.peg.1983 CDS AEJL02000086.1 24272 25006 2 + 735 FIG001590: Putative conserved exported protein precursor CBSS-87626.3.peg.3639
fig|6666666.229912.peg.1984 CDS AEJL02000086.1 25036 26322 1 + 1287 Xaa-Pro aminopeptidase (EC 3.4.11.9) Aminopeptidases (EC 3.4.11.-);
CBSS-87626.3.peg.3639
fig|6666666.229912.peg.1985 CDS AEJL02000086.1 26631 26476 -3 - 156 hypothetical protein - none -
fig|6666666.229912.peg.1986 CDS AEJL02000086.1 26817 27065 3 + 249 SSU ribosomal protein S16p - none -
fig|6666666.229912.peg.1987 CDS AEJL02000086.1 27091 27618 1 + 528 16S rRNA processing protein RimM Ribosome biogenesis bacterial
fig|6666666.229912.peg.1988 CDS AEJL02000086.1 27684 28433 3 + 750 tRNA (Guanine37-N1) -methyltransferase (EC 2.1.1.31) RNA methylation;
Ribosome biogenesis bacterial;
tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229912.peg.1989 CDS AEJL02000086.1 28459 28809 1 + 351 LSU ribosomal protein L19p Ribosome LSU bacterial
fig|6666666.229912.peg.1990 CDS AEJL02000086.1 29407 28919 -1 - 489 Rod shape-determining protein MreD Bacterial Cell Division;
Bacterial Cytoskeleton;
CBSS-354.1.peg.2917
fig|6666666.229912.peg.1991 CDS AEJL02000086.1 30480 29407 -3 - 1074 Rod shape-determining protein MreC Bacterial Cell Division;
Bacterial Cytoskeleton;
CBSS-354.1.peg.2917
fig|6666666.229912.peg.1992 CDS AEJL02000086.1 31605 30550 -3 - 1056 Rod shape-determining protein MreB Bacterial Cell Division;
Bacterial Cytoskeleton
fig|6666666.229912.peg.1993 CDS AEJL02000086.1 31855 34260 1 + 2406 3@1-to-5@1 exoribonuclease RNase R RNA processing and degradation, bacterial
fig|6666666.229912.peg.1994 CDS AEJL02000086.1 34257 34994 3 + 738 23S rRNA (guanosine-2@1-O-) -methyltransferase rlmB (EC 2.1.1.-) RNA methylation
fig|6666666.229912.peg.1995 CDS AEJL02000086.1 35327 36769 2 + 1443 Glycerol-3-phosphate transporter - none -
fig|6666666.229912.peg.1996 CDS AEJL02000086.1 37001 37954 2 + 954 Glycerophosphoryl diester phosphodiesterase, periplasmic (EC 3.1.4.46) - none -
fig|6666666.229912.peg.1997 CDS AEJL02000087.1 200 2302 2 + 2103 Translation elongation factor G Translation elongation factor G family;
Translation elongation factors bacterial;
Universal GTPases
fig|6666666.229912.peg.1998 CDS AEJL02000088.1 90 1172 3 + 1083 DNA polymerase IV (EC 2.7.7.7) DNA repair, bacterial
fig|6666666.229912.peg.1999 CDS AEJL02000088.1 1342 2169 1 + 828 Dihydropteroate synthase (EC 2.5.1.15) Folate Biosynthesis;
Folate biosynthesis cluster
fig|6666666.229912.peg.2000 CDS AEJL02000088.1 2197 3534 1 + 1338 Phosphoglucosamine mutase (EC 5.4.2.10) Sialic Acid Metabolism;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229912.peg.2001 CDS AEJL02000088.1 3547 4014 1 + 468 Phosphohistidine phosphatase SixA - none -
fig|6666666.229912.peg.2002 CDS AEJL02000088.1 4238 4783 2 + 546 FIG00696317: hypothetical protein - none -
fig|6666666.229912.peg.2003 CDS AEJL02000088.1 5467 4805 -1 - 663 Septum site-determining protein MinC Bacterial Cell Division;
Bacterial Cytoskeleton;
Septum site-determining cluster Min
fig|6666666.229912.peg.2004 CDS AEJL02000088.1 5551 5802 1 + 252 Protein YcgL CBSS-243277.1.peg.4359
fig|6666666.229912.peg.2005 CDS AEJL02000088.1 6709 6200 -1 - 510 probable lipoprotein NlpC - none -
fig|6666666.229912.peg.2006 CDS AEJL02000088.1 7743 6889 -3 - 855 2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase (EC 2.5.1.55) A Gammaproteobacteria Cluster Relating to Translation;
KDO2-Lipid A biosynthesis
fig|6666666.229912.peg.2007 CDS AEJL02000088.1 8652 7753 -3 - 900 Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2 A Gammaproteobacteria Cluster Relating to Translation;
CBSS-216600.3.peg.802;
Translation termination factors bacterial;
YrdC-YciO-Sua5 protein family
fig|6666666.229912.peg.2008 CDS AEJL02000088.1 9774 8692 -3 - 1083 Peptide chain release factor 1 A Gammaproteobacteria Cluster Relating to Translation;
CBSS-216600.3.peg.802;
Translation termination factors bacterial;
YrdC-YciO-Sua5 protein family
fig|6666666.229912.peg.2009 CDS AEJL02000088.1 10370 9915 -2 - 456 Outer membrane lipoprotein - none -
fig|6666666.229912.peg.2010 CDS AEJL02000088.1 10999 10412 -1 - 588 Protein yecM - none -
fig|6666666.229912.peg.2011 CDS AEJL02000088.1 11096 12829 2 + 1734 Arginyl-tRNA synthetase (EC 6.1.1.19) tRNA aminoacylation, Arg
fig|6666666.229912.peg.2012 CDS AEJL02000088.1 14406 13435 -3 - 972 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch;
Threonine and Homoserine Biosynthesis
fig|6666666.229912.peg.2013 CDS AEJL02000088.1 14467 14946 1 + 480 Cys-tRNA(Pro) deacylase YbaK tRNA aminoacylation, Pro
fig|6666666.229912.peg.2014 CDS AEJL02000088.1 16805 15060 -2 - 1746 Ferrichrome-iron receptor - none -
fig|6666666.229912.peg.2015 CDS AEJL02000088.1 17494 16859 -1 - 636 Ferrichrome-iron receptor - none -
fig|6666666.229912.peg.2016 CDS AEJL02000089.1 1050 115 -3 - 936 Cell division protein FtsX Bacterial Cell Division
fig|6666666.229912.peg.2017 CDS AEJL02000089.1 1709 1059 -2 - 651 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) Bacterial Cell Division
fig|6666666.229912.peg.2018 CDS AEJL02000089.1 3124 1748 -1 - 1377 Signal recognition particle receptor protein FtsY (=alpha subunit) (TC 3.A.5.1.1) Bacterial Cell Division;
Bacterial signal recognition particle (SRP);
Universal GTPases
fig|6666666.229912.peg.2019 CDS AEJL02000089.1 3212 3796 2 + 585 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) CBSS-266117.6.peg.1260;
CBSS-269801.1.peg.1715;
RNA methylation
fig|6666666.229912.peg.2020 CDS AEJL02000089.1 4095 5060 3 + 966 PTS system, mannose-specific IIA component (EC 2.7.1.69) / PTS system, mannose-specific IIB component (EC 2.7.1.69) Mannose Metabolism;
Mannose Metabolism;
Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229912.peg.2021 CDS AEJL02000089.1 5078 5875 2 + 798 PTS system, mannose-specific IIC component (EC 2.7.1.69) Mannose Metabolism;
Sialic Acid Metabolism
fig|6666666.229912.peg.2022 CDS AEJL02000089.1 5889 6725 3 + 837 PTS system, mannose-specific IID component (EC 2.7.1.69) Mannose Metabolism;
Sialic Acid Metabolism
fig|6666666.229912.peg.2023 CDS AEJL02000089.1 6835 8010 1 + 1176 Cof protein - none -
fig|6666666.229912.peg.2024 CDS AEJL02000089.1 8301 9551 3 + 1251 Na+ dependent nucleoside transporter NupC Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.229912.peg.2025 CDS AEJL02000089.1 9677 10396 2 + 720 Purine nucleoside phosphorylase (EC 2.4.2.1) Adenosyl nucleosidases;
Deoxyribose and Deoxynucleoside Catabolism;
Purine conversions;
pyrimidine conversions
fig|6666666.229912.peg.2026 CDS AEJL02000089.1 10414 10557 1 + 144 hypothetical protein - none -
fig|6666666.229912.peg.2027 CDS AEJL02000089.1 10699 13086 1 + 2388 Biofilm PGA outer membrane secretin PgaA Biofilm Adhesin Biosynthesis
fig|6666666.229912.peg.2028 CDS AEJL02000089.1 13102 15018 1 + 1917 Biofilm PGA synthesis deacetylase PgaB (EC 3.-) Biofilm Adhesin Biosynthesis
fig|6666666.229912.peg.2029 CDS AEJL02000089.1 15027 16262 3 + 1236 Biofilm PGA synthesis N-glycosyltransferase PgaC (EC 2.4.-.-) Biofilm Adhesin Biosynthesis
fig|6666666.229912.peg.2030 CDS AEJL02000089.1 16265 16558 2 + 294 AagD - none -
fig|6666666.229912.peg.2031 CDS AEJL02000089.1 16648 16526 -1 - 123 hypothetical protein - none -
fig|6666666.229912.peg.2032 CDS AEJL02000089.1 18001 16676 -1 - 1326 Hexose phosphate uptake regulatory protein UhpC - none -
fig|6666666.229912.peg.2033 CDS AEJL02000089.1 18172 18804 1 + 633 Pyridoxamine 5@1-phosphate oxidase (EC 1.4.3.5) Pyridoxin (Vitamin B6) Biosynthesis
fig|6666666.229912.peg.2034 CDS AEJL02000089.1 18896 18756 -2 - 141 hypothetical protein - none -
fig|6666666.229912.peg.2035 CDS AEJL02000090.1 1585 1337 -1 - 249 FIG01055344: hypothetical protein - none -
fig|6666666.229912.peg.2036 CDS AEJL02000090.1 1811 1569 -2 - 243 putative ORF-4 - none -
fig|6666666.229912.peg.2037 CDS AEJL02000090.1 2029 1811 -1 - 219 Riboflavin kinase (EC 2.7.1.26) / FMN adenylyltransferase (EC 2.7.7.2) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin, FMN and FAD metabolism in plants;
riboflavin to FAD;
riboflavin to FAD
fig|6666666.229912.peg.2038 CDS AEJL02000090.1 2744 2034 -2 - 711 Riboflavin kinase (EC 2.7.1.26) / FMN adenylyltransferase (EC 2.7.7.2) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin, FMN and FAD metabolism in plants;
riboflavin to FAD;
riboflavin to FAD
fig|6666666.229912.peg.2039 CDS AEJL02000090.1 4399 2822 -1 - 1578 Proposed peptidoglycan lipid II flippase MurJ Peptidoglycan lipid II flippase
fig|6666666.229912.peg.2040 CDS AEJL02000090.1 4667 4930 2 + 264 SSU ribosomal protein S20p - none -
fig|6666666.229912.peg.2041 CDS AEJL02000090.1 5717 5040 -2 - 678 Lipoate-protein ligase A Lipoic acid metabolism
fig|6666666.229912.peg.2042 CDS AEJL02000090.1 5793 6737 3 + 945 Phosphoserine phosphatase (EC 3.1.3.3) Glycine and Serine Utilization;
Serine Biosynthesis;
Serine Biosynthesis
fig|6666666.229912.peg.2043 CDS AEJL02000090.1 6748 7239 1 + 492 FIG001943: hypothetical protein YajQ Broadly distributed proteins not in subsystems
fig|6666666.229912.peg.2044 CDS AEJL02000090.1 7368 7952 3 + 585 Peptidyl-tRNA hydrolase (EC 3.1.1.29) Cell division-ribosomal stress proteins cluster;
Sporulation-associated proteins with broader functions;
Transcription repair cluster;
Translation termination factors bacterial
fig|6666666.229912.peg.2045 CDS AEJL02000090.1 8141 9232 2 + 1092 GTP-binding and nucleic acid-binding protein YchF Universal GTPases
fig|6666666.229912.peg.2046 CDS AEJL02000090.1 9568 10149 1 + 582 Hypothetical protein VC0266 (sugar utilization related?) VC0266
fig|6666666.229912.peg.2047 CDS AEJL02000090.1 10221 10367 3 + 147 hypothetical protein - none -
fig|6666666.229912.peg.2048 CDS AEJL02000090.1 10509 10622 3 + 114 hypothetical protein - none -
fig|6666666.229912.peg.2049 CDS AEJL02000090.1 11534 10587 -2 - 948 Cysteine synthase (EC 2.5.1.47) Cysteine Biosynthesis;
Methionine Biosynthesis
fig|6666666.229912.peg.2050 CDS AEJL02000090.1 12472 11648 -1 - 825 Sulfate transporter, CysZ-type Cysteine Biosynthesis
fig|6666666.229912.peg.2051 CDS AEJL02000090.1 12613 13650 1 + 1038 Cell division protein ZipA Bacterial Cytoskeleton
fig|6666666.229912.peg.2052 CDS AEJL02000090.1 13760 13647 -2 - 114 hypothetical protein - none -
fig|6666666.229912.peg.2053 CDS AEJL02000090.1 13754 15769 2 + 2016 DNA ligase (EC 6.5.1.2) DNA Repair Base Excision
fig|6666666.229912.peg.2054 CDS AEJL02000090.1 16416 15838 -3 - 579 Thymidine kinase (EC 2.7.1.21) pyrimidine conversions
fig|6666666.229912.peg.2055 CDS AEJL02000090.1 16652 16419 -2 - 234 unknown - none -
fig|6666666.229912.peg.2056 CDS AEJL02000090.1 17745 16717 -3 - 1029 TsaD/Kae1/Qri7 protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Macromolecular synthesis operon;
YgjD and YeaZ;
YrdC-YciO-Sua5 protein family
fig|6666666.229912.peg.2057 CDS AEJL02000090.1 17935 17768 -1 - 168 hypothetical protein - none -
fig|6666666.229912.peg.2058 CDS AEJL02000090.1 17970 18185 3 + 216 SSU ribosomal protein S21p Macromolecular synthesis operon
fig|6666666.229912.peg.2059 CDS AEJL02000090.1 18307 20064 1 + 1758 DNA primase (EC 2.7.7.-) CBSS-349161.4.peg.2417;
Macromolecular synthesis operon
fig|6666666.229912.peg.2060 CDS AEJL02000090.1 20140 21990 1 + 1851 RNA polymerase sigma factor RpoD CBSS-349161.4.peg.2417;
Macromolecular synthesis operon;
Transcription initiation, bacterial sigma factors
fig|6666666.229912.peg.2061 CDS AEJL02000090.1 22385 22657 2 + 273 Phage integrase - none -
fig|6666666.229912.peg.2062 CDS AEJL02000091.1 40 456 1 + 417 Probable phospholipase protein - none -
fig|6666666.229912.peg.2063 CDS AEJL02000092.1 15 413 3 + 399 hypothetical protein - none -
fig|6666666.229912.peg.2064 CDS AEJL02000092.1 1236 3368 3 + 2133 hypothetical protein - none -
fig|6666666.229912.peg.2065 CDS AEJL02000093.1 2543 1557 -2 - 987 TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein Sialic Acid Metabolism
fig|6666666.229912.peg.2066 CDS AEJL02000093.1 2785 3486 1 + 702 N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9) Sialic Acid Metabolism
fig|6666666.229912.peg.2067 CDS AEJL02000093.1 3500 4387 2 + 888 N-acetylmannosamine kinase (EC 2.7.1.60) Sialic Acid Metabolism
fig|6666666.229912.peg.2068 CDS AEJL02000093.1 4397 5266 2 + 870 Sialic acid utilization regulator, RpiR family Sialic Acid Metabolism
fig|6666666.229912.peg.2069 CDS AEJL02000093.1 5276 6154 2 + 879 N-acetylneuraminate lyase (EC 4.1.3.3) Sialic Acid Metabolism
fig|6666666.229912.peg.2070 CDS AEJL02000093.1 6309 7112 3 + 804 Glucosamine-6-phosphate deaminase (EC 3.5.99.6) Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism
fig|6666666.229912.peg.2071 CDS AEJL02000093.1 7168 8313 1 + 1146 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism
fig|6666666.229912.peg.2072 CDS AEJL02000093.1 8413 8526 1 + 114 hypothetical protein - none -
fig|6666666.229912.peg.2073 CDS AEJL02000093.1 9018 8518 -3 - 501 Thiol peroxidase, Tpx-type (EC 1.11.1.15) Thioredoxin-disulfide reductase
fig|6666666.229912.peg.2074 CDS AEJL02000093.1 10123 9059 -1 - 1065 Ferrochelatase, protoheme ferro-lyase (EC 4.99.1.1) Heme and Siroheme Biosynthesis
fig|6666666.229912.peg.2075 CDS AEJL02000093.1 10538 10116 -2 - 423 FIG017415: ydiI hotdog fold superfamily - none -
fig|6666666.229912.peg.2076 CDS AEJL02000093.1 11318 10548 -2 - 771 Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD Glycolate, glyoxylate interconversions
fig|6666666.229912.peg.2077 CDS AEJL02000093.1 13601 11352 -2 - 2250 Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD Glycolate, glyoxylate interconversions
fig|6666666.229912.peg.2078 CDS AEJL02000093.1 14086 15126 1 + 1041 Outer membrane protein A precursor Osmoregulation
fig|6666666.229912.peg.2079 CDS AEJL02000093.1 15444 15773 3 + 330 Glutaredoxin-related protein Glutaredoxins
fig|6666666.229912.peg.2080 CDS AEJL02000093.1 15748 16350 1 + 603 putative membrane protein - none -
fig|6666666.229912.peg.2081 CDS AEJL02000093.1 16351 16740 1 + 390 COG2363 - none -
fig|6666666.229912.peg.2082 CDS AEJL02000094.1 239 472 2 + 234 hypothetical protein - none -
fig|6666666.229912.peg.2083 CDS AEJL02000096.1 2014 671 -1 - 1344 putative hexose phosphate transport protein - none -
fig|6666666.229912.peg.2084 CDS AEJL02000096.1 2835 2032 -3 - 804 Inositol-1-monophosphatase (EC 3.1.3.25) - none -
fig|6666666.229912.peg.2085 CDS AEJL02000096.1 3099 3929 3 + 831 5-deoxy-glucuronate isomerase (EC 5.3.1.-) Inositol catabolism
fig|6666666.229912.peg.2086 CDS AEJL02000097.1 1330 1127 -1 - 204 hypothetical protein - none -
fig|6666666.229912.peg.2087 CDS AEJL02000097.1 1803 1504 -3 - 300 hypothetical protein - none -
fig|6666666.229912.peg.2088 CDS AEJL02000098.1 2026 2652 1 + 627 membrane protein ykgB - none -
fig|6666666.229912.peg.2089 CDS AEJL02000098.1 2722 3603 1 + 882 Transcriptional regulator, AraC family - none -
fig|6666666.229912.peg.2090 CDS AEJL02000098.1 4198 3608 -1 - 591 ADP compounds hydrolase NudE (EC 3.6.1.-) Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229912.peg.2091 CDS AEJL02000098.1 4237 4896 1 + 660 FIG001957: putative hydrolase CBSS-584.1.peg.3382
fig|6666666.229912.peg.2092 CDS AEJL02000098.1 4909 5325 1 + 417 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) CBSS-584.1.peg.3382;
Cell division-ribosomal stress proteins cluster;
DNA replication cluster 1;
Heat shock dnaK gene cluster extended
fig|6666666.229912.peg.2093 CDS AEJL02000100.1 743 1345 2 + 603 hypothetical protein - none -
fig|6666666.229912.peg.2094 CDS AEJL02000100.1 5898 4390 -3 - 1509 Lysyl-tRNA synthetase (class II) (EC 6.1.1.6) tRNA aminoacylation, Lys
fig|6666666.229912.peg.2095 CDS AEJL02000100.1 6857 5955 -2 - 903 Peptide chain release factor 2; programmed frameshift-containing Programmed frameshift;
Programmed frameshift;
Translation termination factors bacterial
fig|6666666.229912.peg.2096 CDS AEJL02000100.1 7137 6976 -3 - 162 hypothetical protein - none -
fig|6666666.229912.peg.2097 CDS AEJL02000100.1 7221 7904 3 + 684 Thiol:disulfide interchange protein DsbC Periplasmic disulfide interchange
fig|6666666.229912.peg.2098 CDS AEJL02000102.1 45 194 3 + 150 hypothetical protein - none -
fig|6666666.229912.peg.2099 CDS AEJL02000102.1 568 882 1 + 315 VgrG-3 protein - none -
fig|6666666.229912.peg.2100 CDS AEJL02000103.1 1668 478 -3 - 1191 hypothetical protein - none -
fig|6666666.229912.peg.2101 CDS AEJL02000103.1 3292 1688 -1 - 1605 hypothetical protein - none -
fig|6666666.229912.peg.2102 CDS AEJL02000106.1 1616 543 -2 - 1074 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) - none -
fig|6666666.229912.peg.2103 CDS AEJL02000106.1 1744 3027 1 + 1284 Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8) CBSS-196164.1.peg.461;
Heme and Siroheme Biosynthesis
fig|6666666.229912.peg.2104 CDS AEJL02000106.1 3864 3103 -3 - 762 [Protein-PII] uridylyltransferase (EC 2.7.7.59) Ammonia assimilation;
CBSS-312309.3.peg.1965
fig|6666666.229912.peg.2105 CDS AEJL02000107.1 801 175 -3 - 627 Probable phospholipase protein - none -
fig|6666666.229912.peg.2106 CDS AEJL02000108.1 222 653 3 + 432 hypothetical protein - none -
fig|6666666.229912.peg.2107 CDS AEJL02000108.1 666 1691 3 + 1026 hypothetical protein - none -
fig|6666666.229912.peg.2108 CDS AEJL02000109.1 2226 643 -3 - 1584 Nickel ABC transporter, periplasmic nickel-binding protein NikA (TC 3.A.1.5.3) Transport of Nickel and Cobalt
fig|6666666.229912.peg.2109 CDS AEJL02000109.1 3623 2292 -2 - 1332 ATP-dependent hsl protease ATP-binding subunit HslU Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229912.peg.2110 CDS AEJL02000109.1 4171 3644 -1 - 528 ATP-dependent protease HslV (EC 3.4.25.-) Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229912.peg.2111 CDS AEJL02000109.1 4386 5093 3 + 708 NMN phosphatase (EC 3.1.3.5); Class B acid phosphatase precursor (EC 3.1.3.2) NAD and NADP cofactor biosynthesis global
fig|6666666.229912.peg.2112 CDS AEJL02000109.1 5744 5475 -2 - 270 hypothetical protein - none -
fig|6666666.229912.peg.2113 CDS AEJL02000109.1 6045 5728 -3 - 318 hypothetical protein - none -
fig|6666666.229912.peg.2114 CDS AEJL02000109.1 7313 6069 -2 - 1245 Tryptophan-specific transport protein - none -
fig|6666666.229912.peg.2115 CDS AEJL02000109.1 7475 8002 2 + 528 Inorganic pyrophosphatase (EC 3.6.1.1) Phosphate metabolism
fig|6666666.229912.peg.2116 CDS AEJL02000109.1 8078 8851 2 + 774 Zn-dependent protease with chaperone function - none -
fig|6666666.229912.peg.2117 CDS AEJL02000109.1 9697 8939 -1 - 759 Ferric siderophore transport system, periplasmic binding protein TonB Hemin transport system;
Ton and Tol transport systems
fig|6666666.229912.peg.2118 CDS AEJL02000109.1 10153 9707 -1 - 447 Biopolymer transport protein ExbD/TolR Ton and Tol transport systems
fig|6666666.229912.peg.2119 CDS AEJL02000109.1 10627 10157 -1 - 471 Ferric siderophore transport system, biopolymer transport protein ExbB Ton and Tol transport systems
fig|6666666.229912.peg.2120 CDS AEJL02000109.1 12064 10802 -1 - 1263 Magnesium and cobalt efflux protein CorC CBSS-56780.10.peg.1536;
Copper homeostasis: copper tolerance;
Glycyl-tRNA synthetase containing cluster;
Magnesium transport;
tRNA-methylthiotransferase containing cluster
fig|6666666.229912.peg.2121 CDS AEJL02000109.1 12933 12139 -3 - 795 FIG001154: CcsA-related protein - none -
fig|6666666.229912.peg.2122 CDS AEJL02000109.1 13087 14466 1 + 1380 Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1) Bacterial signal recognition particle (SRP);
Universal GTPases
fig|6666666.229912.peg.2123 CDS AEJL02000109.1 14753 14634 -2 - 120 hypothetical protein - none -
fig|6666666.229912.peg.2124 CDS AEJL02000109.1 15936 15106 -3 - 831 S-formylglutathione hydrolase (EC 3.1.2.12) Glutathione-dependent pathway of formaldehyde detoxification
fig|6666666.229912.peg.2125 CDS AEJL02000109.1 17073 15949 -3 - 1125 S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) Glutathione-dependent pathway of formaldehyde detoxification
fig|6666666.229912.peg.2126 CDS AEJL02000109.1 17211 17618 3 + 408 Transcriptional regulator, MerR family Cobalt-zinc-cadmium resistance
fig|6666666.229912.peg.2127 CDS AEJL02000109.1 18481 17732 -1 - 750 Sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140) - none -
fig|6666666.229912.peg.2128 CDS AEJL02000109.1 20070 18703 -3 - 1368 Adenylosuccinate lyase (EC 4.3.2.2) CBSS-354.1.peg.876;
Purine conversions
fig|6666666.229912.peg.2129 CDS AEJL02000109.1 20705 20094 -2 - 612 FIG002903: a protein of unknown function perhaps involved in purine metabolism CBSS-354.1.peg.876
fig|6666666.229912.peg.2130 CDS AEJL02000109.1 20818 21228 1 + 411 Copper metallochaperone, bacterial analog of Cox17 protein Biogenesis of cytochrome c oxidases
fig|6666666.229912.peg.2131 CDS AEJL02000109.1 21367 21903 1 + 537 Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR De Novo Pyrimidine Synthesis;
De Novo Pyrimidine Synthesis;
pyrimidine conversions
fig|6666666.229912.peg.2132 CDS AEJL02000109.1 21970 22902 1 + 933 Survival protein SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA) (EC 5.2.1.8) Lipopolysaccharide assembly;
Peptidyl-prolyl cis-trans isomerase;
Periplasmic Stress Response
fig|6666666.229912.peg.2133 CDS AEJL02000109.1 22980 23843 3 + 864 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase (EC 2.1.1.182) RNA methylation;
Ribosome biogenesis bacterial
fig|6666666.229912.peg.2134 CDS AEJL02000109.1 23859 24686 3 + 828 Bis(5@1-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) - none -
fig|6666666.229912.peg.2135 CDS AEJL02000109.1 24777 25196 3 + 420 nucleotidyltransferase substrate binding protein, HI0074 family - none -
fig|6666666.229912.peg.2136 CDS AEJL02000109.1 25180 25473 1 + 294 nucleotidyltransferase - none -
fig|6666666.229912.peg.2137 CDS AEJL02000109.1 25501 26058 1 + 558 FIG00696423: hypothetical protein - none -
fig|6666666.229912.peg.2138 CDS AEJL02000109.1 26013 26129 3 + 117 hypothetical protein - none -
fig|6666666.229912.peg.2139 CDS AEJL02000109.1 26101 26271 1 + 171 hypothetical protein - none -
fig|6666666.229912.peg.2140 CDS AEJL02000109.1 26249 28837 2 + 2589 Leucyl-tRNA synthetase (EC 6.1.1.4) CBSS-208964.1.peg.3988;
tRNA aminoacylation, Leu
fig|6666666.229912.peg.2141 CDS AEJL02000109.1 28990 28862 -1 - 129 hypothetical protein - none -
fig|6666666.229912.peg.2142 CDS AEJL02000109.1 28979 29482 2 + 504 LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B) CBSS-208964.1.peg.3988;
KDO2-Lipid A biosynthesis;
Lipopolysaccharide assembly
fig|6666666.229912.peg.2143 CDS AEJL02000109.1 29482 30516 1 + 1035 DNA polymerase III delta subunit (EC 2.7.7.7) CBSS-208964.1.peg.3988
fig|6666666.229912.peg.2144 CDS AEJL02000109.1 31412 31008 -2 - 405 Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-) Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229912.peg.2145 CDS AEJL02000109.1 34251 31489 -3 - 2763 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) - none -
fig|6666666.229912.peg.2146 CDS AEJL02000109.1 34578 34261 -3 - 318 hypothetical protein - none -
fig|6666666.229912.peg.2147 CDS AEJL02000109.1 34670 34981 2 + 312 Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives DNA replication cluster 1
fig|6666666.229912.peg.2148 CDS AEJL02000109.1 35009 35512 2 + 504 Mercuric resistance operon regulatory protein - none -
fig|6666666.229912.peg.2149 CDS AEJL02000111.1 155 391 2 + 237 hypothetical protein - none -
fig|6666666.229912.peg.2150 CDS AEJL02000111.1 742 1491 1 + 750 hypothetical protein - none -
fig|6666666.229912.peg.2151 CDS AEJL02000111.1 1950 2519 3 + 570 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) Glycogen metabolism;
Glycogen metabolism cluster;
Maltose and Maltodextrin Utilization;
Maltose utilization cluster
fig|6666666.229912.peg.2152 CDS AEJL02000111.1 2507 4702 2 + 2196 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) Glycogen metabolism;
Glycogen metabolism cluster
fig|6666666.229912.peg.2153 CDS AEJL02000113.1 19 168 1 + 150 Probable phospholipase protein - none -
fig|6666666.229912.peg.2154 CDS AEJL02000113.1 204 926 3 + 723 miscellaneous; hypothetical/partial homology - none -
fig|6666666.229912.peg.2155 CDS AEJL02000114.1 451 221 -1 - 231 Putative DNA-binding protein in cluster with Type I restriction-modification system Restriction-Modification System
fig|6666666.229912.peg.2156 CDS AEJL02000115.1 95 274 2 + 180 hypothetical protein - none -
fig|6666666.229912.peg.2157 CDS AEJL02000115.1 613 1431 1 + 819 hypothetical protein - none -
fig|6666666.229912.peg.2158 CDS AEJL02000115.1 1424 3574 2 + 2151 hypothetical protein - none -
fig|6666666.229912.peg.2159 CDS AEJL02000115.1 3577 4587 1 + 1011 hypothetical protein - none -
fig|6666666.229912.peg.2160 CDS AEJL02000115.1 4596 4772 3 + 177 hypothetical protein - none -
fig|6666666.229912.peg.2161 CDS AEJL02000116.1 371 84 -2 - 288 hypothetical protein - none -
fig|6666666.229912.peg.2162 CDS AEJL02000118.1 4 309 1 + 306 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41) Fatty Acid Biosynthesis FASII
fig|6666666.229912.peg.2163 CDS AEJL02000118.1 450 2297 3 + 1848 Aerobic respiration control sensor protein arcB (EC 2.7.3.-) - none -
fig|6666666.229912.peg.2164 CDS AEJL02000118.1 3199 2372 -1 - 828 Galactose/methyl galactoside ABC transport system, permease protein MglC (TC 3.A.1.2.3) Lactose and Galactose Uptake and Utilization
fig|6666666.229912.peg.2165 CDS AEJL02000121.1 240 40 -3 - 201 Mobile element protein - none -
fig|6666666.229912.peg.2166 CDS AEJL02000121.1 367 242 -1 - 126 Mobile element protein - none -
fig|6666666.229912.peg.2167 CDS AEJL02000123.1 2919 1156 -3 - 1764 Probable phospholipase protein - none -
fig|6666666.229912.peg.2168 CDS AEJL02000124.1 298 170 -1 - 129 hypothetical protein - none -
fig|6666666.229912.peg.2169 CDS AEJL02000126.1 79 681 1 + 603 hypothetical protein - none -
fig|6666666.229912.peg.2170 CDS AEJL02000128.1 509 84 -2 - 426 hypothetical protein - none -
fig|6666666.229912.peg.2171 CDS AEJL02000129.1 356 120 -2 - 237 Xylose isomerase (EC 5.3.1.5) Xylose utilization
fig|6666666.229912.peg.2172 CDS AEJL02000130.1 72 1193 3 + 1122 Phosphoglycerate transport regulatory protein PgtC Phosphoglycerate transport system
fig|6666666.229912.peg.2173 CDS AEJL02000131.1 10 399 1 + 390 Ferredoxin--NADP(+) reductase (EC 1.18.1.2) Biogenesis of cytochrome c oxidases
fig|6666666.229912.peg.2174 CDS AEJL02000131.1 417 554 3 + 138 hypothetical protein - none -
fig|6666666.229912.peg.2175 CDS AEJL02000133.1 1065 163 -3 - 903 hypothetical protein - none -
fig|6666666.229912.peg.2176 CDS AEJL02000133.1 1812 1111 -3 - 702 Selenocysteine-specific translation elongation factor Selenocysteine metabolism
fig|6666666.229912.peg.2177 CDS AEJL02000134.1 16 357 1 + 342 TRAP-type transport system, large permease component, predicted N-acetylneuraminate transporter / TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229912.peg.2178 CDS AEJL02000134.1 495 1625 3 + 1131 Sialic acid-induced transmembrane protein YjhT(NanM), possible mutarotase Sialic Acid Metabolism
fig|6666666.229912.peg.2179 CDS AEJL02000134.1 1874 3340 2 + 1467 PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69) Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism;
Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229912.rna.1 RNA AEJL02000002.1 24769 24855 1 + 87 tRNA-Ser-GGA tRNAs
fig|6666666.229912.rna.2 RNA AEJL02000006.1 2272 2202 -1 - 71 tRNA-Cys-GCA tRNAs
fig|6666666.229912.rna.3 RNA AEJL02000006.1 2356 2284 -1 - 73 tRNA-Gly-GCC tRNAs
fig|6666666.229912.rna.4 RNA AEJL02000006.1 9755 9841 2 + 87 tRNA-Ser-TGA - none -
fig|6666666.229912.rna.5 RNA AEJL02000007.1 20652 20725 3 + 74 tRNA-Pro-TGG - none -
fig|6666666.229912.rna.6 RNA AEJL02000007.1 20762 20835 2 + 74 tRNA-Arg-TCT - none -
fig|6666666.229912.rna.7 RNA AEJL02000010.1 14527 14599 1 + 73 tRNA-Lys-TTT - none -
fig|6666666.229912.rna.8 RNA AEJL02000010.1 14630 14702 2 + 73 tRNA-Lys-TTT - none -
fig|6666666.229912.rna.9 RNA AEJL02000010.1 14731 14804 1 + 74 tRNA-Lys-CTT - none -
fig|6666666.229912.rna.10 RNA AEJL02000018.1 38278 38205 -1 - 74 tRNA-Met-CAT - none -
fig|6666666.229912.rna.11 RNA AEJL02000018.1 40304 40232 -2 - 73 tRNA-Trp-CCA tRNAs
fig|6666666.229912.rna.12 RNA AEJL02000018.1 40415 40342 -2 - 74 tRNA-Asp-GTC - none -
fig|6666666.229912.rna.13 RNA AEJL02000018.1 40541 40422 -2 - 120 5S RNA - none -
fig|6666666.229912.rna.14 RNA AEJL02000018.1 40679 40588 -2 - 92 5S RNA - none -
fig|6666666.229912.rna.15 RNA AEJL02000025.1 25358 25268 -2 - 91 tRNA-SeC(p)-TCA - none -
fig|6666666.229912.rna.16 RNA AEJL02000026.1 26229 26159 -3 - 71 tRNA-Pseudo-AAC - none -
fig|6666666.229912.rna.17 RNA AEJL02000031.1 155 1694 2 + 1540 Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA - none -
fig|6666666.229912.rna.18 RNA AEJL02000034.1 4560 4488 -3 - 73 tRNA-Asn-GTT - none -
fig|6666666.229912.rna.19 RNA AEJL02000034.1 4640 4568 -2 - 73 tRNA-Phe-GAA tRNAs
fig|6666666.229912.rna.20 RNA AEJL02000037.1 189 3231 3 + 3043 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA - none -
fig|6666666.229912.rna.21 RNA AEJL02000037.1 3479 3594 2 + 116 5S RNA - none -
fig|6666666.229912.rna.22 RNA AEJL02000039.1 20059 19987 -1 - 73 tRNA-Gly-GCC tRNAs
fig|6666666.229912.rna.23 RNA AEJL02000041.1 3936 4008 3 + 73 tRNA-Gly-GCC tRNAs
fig|6666666.229912.rna.24 RNA AEJL02000041.1 4013 4096 2 + 84 tRNA-Leu-TAA - none -
fig|6666666.229912.rna.25 RNA AEJL02000041.1 4151 4223 2 + 73 tRNA-Lys-TTT - none -
fig|6666666.229912.rna.26 RNA AEJL02000041.1 33578 33505 -2 - 74 tRNA-Met-CAT - none -
fig|6666666.229912.rna.27 RNA AEJL02000044.1 44765 44838 2 + 74 tRNA-Asp-GTC - none -
fig|6666666.229912.rna.28 RNA AEJL02000044.1 44864 44937 2 + 74 tRNA-Asp-GTC - none -
fig|6666666.229912.rna.29 RNA AEJL02000046.1 22757 22829 2 + 73 tRNA-Thr-TGT - none -
fig|6666666.229912.rna.30 RNA AEJL02000046.1 22863 22944 3 + 82 tRNA-Tyr-GTA - none -
fig|6666666.229912.rna.31 RNA AEJL02000046.1 22988 23059 2 + 72 tRNA-Gly-TCC - none -
fig|6666666.229912.rna.32 RNA AEJL02000046.1 23066 23138 2 + 73 tRNA-Thr-GGT - none -
fig|6666666.229912.rna.33 RNA AEJL02000048.1 6650 6579 -2 - 72 tRNA-Gln-TTG - none -
fig|6666666.229912.rna.34 RNA AEJL02000048.1 6762 6691 -3 - 72 tRNA-Gln-TTG - none -
fig|6666666.229912.rna.35 RNA AEJL02000048.1 6876 6795 -3 - 82 tRNA-Leu-TAG - none -
fig|6666666.229912.rna.36 RNA AEJL02000048.1 6958 6885 -1 - 74 tRNA-Met-CAT - none -
fig|6666666.229912.rna.37 RNA AEJL02000048.1 22793 22865 2 + 73 tRNA-Asn-GTT - none -
fig|6666666.229912.rna.38 RNA AEJL02000049.1 7611 7694 3 + 84 tRNA-Leu-CAG tRNAs
fig|6666666.229912.rna.39 RNA AEJL02000059.1 1725 1643 -3 - 83 tRNA-Leu-CAA tRNAs
fig|6666666.229912.rna.40 RNA AEJL02000062.1 131 203 2 + 73 tRNA-Glu-TTC - none -
fig|6666666.229912.rna.41 RNA AEJL02000063.1 17430 17348 -3 - 83 tRNA-Leu-GAG tRNAs
fig|6666666.229912.rna.42 RNA AEJL02000066.1 722 649 -2 - 74 tRNA-Val-GAC tRNAs
fig|6666666.229912.rna.43 RNA AEJL02000069.1 8740 8667 -1 - 74 tRNA-Arg-ACG tRNAs
fig|6666666.229912.rna.44 RNA AEJL02000069.1 8871 8798 -3 - 74 tRNA-Arg-ACG tRNAs
fig|6666666.229912.rna.45 RNA AEJL02000069.1 8982 8892 -3 - 91 tRNA-Ser-GCT - none -
fig|6666666.229912.rna.46 RNA AEJL02000082.1 10643 10571 -2 - 73 tRNA-Ala-GGC tRNAs
fig|6666666.229912.rna.47 RNA AEJL02000082.1 12456 12528 3 + 73 tRNA-Val-TAC - none -
fig|6666666.229912.rna.48 RNA AEJL02000082.1 12570 12642 3 + 73 tRNA-Val-TAC - none -
fig|6666666.229912.rna.49 RNA AEJL02000082.1 12673 12745 1 + 73 tRNA-Val-TAC - none -
fig|6666666.229912.rna.50 RNA AEJL02000085.1 255 183 -3 - 73 tRNA-Ala-TGC - none -
fig|6666666.229912.rna.51 RNA AEJL02000085.1 381 308 -3 - 74 tRNA-Ile-GAT - none -
fig|6666666.229912.rna.52 RNA AEJL02000090.1 22120 22193 1 + 74 tRNA-Met-CAT - none -
fig|6666666.229912.rna.53 RNA AEJL02000106.1 190 117 -1 - 74 tRNA-Pro-TGG - none -
fig|6666666.229912.rna.54 RNA AEJL02000106.1 268 196 -1 - 73 tRNA-His-GTG - none -
fig|6666666.229912.rna.55 RNA AEJL02000106.1 376 303 -1 - 74 tRNA-Arg-CCG tRNAs