fig|6666666.229913.peg.1 CDS CP016553.1 1 1362 1 + 1362 Chromosomal replication initiator protein DnaA Cell Division Subsystem including YidCD;
DNA replication cluster 1
fig|6666666.229913.peg.2 CDS CP016553.1 1373 2473 2 + 1101 DNA polymerase III beta subunit (EC 2.7.7.7) Cell Division Subsystem including YidCD;
DNA replication cluster 1
fig|6666666.229913.peg.3 CDS CP016553.1 2477 3553 2 + 1077 DNA recombination and repair protein RecF Cell Division Subsystem including YidCD;
DNA repair, bacterial RecFOR pathway;
DNA replication cluster 1
fig|6666666.229913.peg.4 CDS CP016553.1 4355 3600 -2 - 756 Ubiquinone/menaquinone biosynthesis methyltransferase UbiE (EC 2.1.1.-) Menaquinone and Phylloquinone Biosynthesis;
Ubiquinone Biosynthesis
fig|6666666.229913.peg.5 CDS CP016553.1 4543 5118 1 + 576 Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1) Oxidative stress;
Protection from Reactive Oxygen Species
fig|6666666.229913.peg.6 CDS CP016553.1 6472 5276 -1 - 1197 NAD(FAD)-utilizing dehydrogenases - none -
fig|6666666.229913.peg.7 CDS CP016553.1 7518 6469 -3 - 1050 Cytochrome c-type heme lyase subunit nrfF, nitrite reductase complex assembly - none -
fig|6666666.229913.peg.8 CDS CP016553.1 8045 7515 -2 - 531 Putative thiol:disulfide oxidoreductase, nitrite reductase complex assembly - none -
fig|6666666.229913.peg.9 CDS CP016553.1 9948 8038 -3 - 1911 Cytochrome c-type heme lyase subunit nrfE, nitrite reductase complex assembly - none -
fig|6666666.229913.peg.10 CDS CP016553.1 10087 10305 1 + 219 hypothetical protein - none -
fig|6666666.229913.peg.11 CDS CP016553.1 11502 10537 -3 - 966 NrfD protein - none -
fig|6666666.229913.peg.12 CDS CP016553.1 12122 11499 -2 - 624 NrfC protein - none -
fig|6666666.229913.peg.13 CDS CP016553.1 12838 12173 -1 - 666 Cytochrome c-type protein NrfB precursor - none -
fig|6666666.229913.peg.14 CDS CP016553.1 14435 12912 -2 - 1524 Cytochrome c552 precursor (EC 1.7.2.2) Soluble cytochromes and functionally related electron carriers
fig|6666666.229913.peg.15 CDS CP016553.1 15302 15012 -2 - 291 hypothetical protein - none -
fig|6666666.229913.peg.16 CDS CP016553.1 15943 15320 -1 - 624 Parvulin-like peptidyl-prolyl isomerase - none -
fig|6666666.229913.peg.17 CDS CP016553.1 17001 16078 -3 - 924 Cytochrome c heme lyase subunit CcmH Biogenesis of c-type cytochromes;
Copper homeostasis
fig|6666666.229913.peg.18 CDS CP016553.1 17453 17001 -2 - 453 Cytochrome c heme lyase subunit CcmL Biogenesis of c-type cytochromes
fig|6666666.229913.peg.19 CDS CP016553.1 18097 17552 -1 - 546 Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase Biogenesis of c-type cytochromes;
Periplasmic disulfide interchange
fig|6666666.229913.peg.20 CDS CP016553.1 20084 18126 -2 - 1959 Cytochrome c heme lyase subunit CcmF Biogenesis of c-type cytochromes;
Copper homeostasis
fig|6666666.229913.peg.21 CDS CP016553.1 20602 20084 -1 - 519 Cytochrome c-type biogenesis protein CcmE, heme chaperone Biogenesis of c-type cytochromes
fig|6666666.229913.peg.22 CDS CP016553.1 20772 20599 -3 - 174 Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE Biogenesis of c-type cytochromes
fig|6666666.229913.peg.23 CDS CP016553.1 21560 20823 -2 - 738 Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE Biogenesis of c-type cytochromes
fig|6666666.229913.peg.24 CDS CP016553.1 22236 21571 -3 - 666 ABC transporter involved in cytochrome c biogenesis, CcmB subunit Biogenesis of c-type cytochromes
fig|6666666.229913.peg.25 CDS CP016553.1 22876 22241 -1 - 636 ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA Biogenesis of c-type cytochromes
fig|6666666.229913.peg.26 CDS CP016553.1 24241 23048 -1 - 1194 Bicyclomycin resistance protein - none -
fig|6666666.229913.peg.27 CDS CP016553.1 24947 24246 -2 - 702 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses
fig|6666666.229913.peg.28 CDS CP016553.1 25163 25876 2 + 714 hypothetical protein - none -
fig|6666666.229913.peg.29 CDS CP016553.1 25839 26366 3 + 528 hypothetical protein - none -
fig|6666666.229913.peg.30 CDS CP016553.1 26540 26743 2 + 204 hypothetical protein - none -
fig|6666666.229913.peg.31 CDS CP016553.1 26843 29359 2 + 2517 hypothetical protein - none -
fig|6666666.229913.peg.32 CDS CP016553.1 29372 30397 2 + 1026 hypothetical protein - none -
fig|6666666.229913.peg.33 CDS CP016553.1 30720 30893 3 + 174 hypothetical protein - none -
fig|6666666.229913.peg.34 CDS CP016553.1 30935 31192 2 + 258 Mobile element protein - none -
fig|6666666.229913.peg.35 CDS CP016553.1 31186 31650 1 + 465 Mobile element protein - none -
fig|6666666.229913.peg.36 CDS CP016553.1 32944 31790 -1 - 1155 S-adenosylmethionine synthetase (EC 2.5.1.6) Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229913.peg.37 CDS CP016553.1 33421 33152 -1 - 270 SSU ribosomal protein S15p (S13e) Ribosome SSU bacterial
fig|6666666.229913.peg.38 CDS CP016553.1 34266 33517 -3 - 750 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase (EC 4.2.99.20) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229913.peg.39 CDS CP016553.1 36025 34319 -1 - 1707 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase (EC 2.2.1.9) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229913.peg.40 CDS CP016553.1 37320 36016 -3 - 1305 Menaquinone-specific isochorismate synthase (EC 5.4.4.2) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229913.peg.41 CDS CP016553.1 37437 38693 3 + 1257 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229913.peg.42 CDS CP016553.1 39502 38771 -1 - 732 Transcriptional regulator for fatty acid degradation FadR, GntR family - none -
fig|6666666.229913.peg.43 CDS CP016553.1 39697 41241 1 + 1545 Na+/H+ antiporter NhaB - none -
fig|6666666.229913.peg.44 CDS CP016553.1 41265 41804 3 + 540 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation Biogenesis of c-type cytochromes;
Periplasmic disulfide interchange
fig|6666666.229913.peg.45 CDS CP016553.1 41993 41847 -2 - 147 hypothetical protein - none -
fig|6666666.229913.peg.46 CDS CP016553.1 43434 42004 -3 - 1431 Transglycosylase, Slt family - none -
fig|6666666.229913.peg.47 CDS CP016553.1 43808 43455 -2 - 354 Dihydroneopterin aldolase (EC 4.1.2.25) Folate Biosynthesis;
Folate biosynthesis cluster
fig|6666666.229913.peg.48 CDS CP016553.1 43905 44501 3 + 597 Acyl-phosphate:glycerol-3-phosphate O-acyltransferase PlsY Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229913.peg.49 CDS CP016553.1 45034 44591 -1 - 444 FIG00904084: hypothetical protein - none -
fig|6666666.229913.peg.50 CDS CP016553.1 45129 45956 3 + 828 YpfJ protein, zinc metalloprotease superfamily Broadly distributed proteins not in subsystems
fig|6666666.229913.peg.51 CDS CP016553.1 46949 46158 -2 - 792 putative lipoprotein - none -
fig|6666666.229913.peg.52 CDS CP016553.1 48004 47360 -1 - 645 Manganese superoxide dismutase (EC 1.15.1.1) Oxidative stress;
Protection from Reactive Oxygen Species
fig|6666666.229913.peg.53 CDS CP016553.1 50412 48148 -3 - 2265 NADP-dependent malic enzyme (EC 1.1.1.40) Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229913.peg.54 CDS CP016553.1 50560 50405 -1 - 156 hypothetical protein - none -
fig|6666666.229913.peg.55 CDS CP016553.1 51499 51020 -1 - 480 hypothetical protein - none -
fig|6666666.229913.peg.56 CDS CP016553.1 53072 52011 -2 - 1062 hypothetical protein - none -
fig|6666666.229913.peg.57 CDS CP016553.1 53824 53069 -1 - 756 hypothetical protein - none -
fig|6666666.229913.peg.58 CDS CP016553.1 55103 53826 -2 - 1278 hypothetical protein - none -
fig|6666666.229913.peg.59 CDS CP016553.1 55899 55093 -3 - 807 hypothetical protein - none -
fig|6666666.229913.peg.60 CDS CP016553.1 56576 56779 2 + 204 hypothetical protein - none -
fig|6666666.229913.peg.61 CDS CP016553.1 56790 57164 3 + 375 hypothetical protein - none -
fig|6666666.229913.peg.62 CDS CP016553.1 57206 57463 2 + 258 Mobile element protein - none -
fig|6666666.229913.peg.63 CDS CP016553.1 57457 57921 1 + 465 Mobile element protein - none -
fig|6666666.229913.peg.64 CDS CP016553.1 58004 58504 2 + 501 Protein sprT - none -
fig|6666666.229913.peg.65 CDS CP016553.1 58661 59902 2 + 1242 Serine transporter Glycine and Serine Utilization;
Pyruvate Alanine Serine Interconversions
fig|6666666.229913.peg.66 CDS CP016553.1 59995 61359 1 + 1365 L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17) Glycine and Serine Utilization;
Glycine and Serine Utilization;
Pyruvate Alanine Serine Interconversions;
Pyruvate Alanine Serine Interconversions
fig|6666666.229913.peg.67 CDS CP016553.1 62510 61461 -2 - 1050 L-asparaginase (EC 3.5.1.1) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229913.peg.68 CDS CP016553.1 62678 62565 -2 - 114 hypothetical protein - none -
fig|6666666.229913.peg.69 CDS CP016553.1 62805 63944 3 + 1140 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) CBSS-498211.3.peg.1415;
Conserved gene cluster associated with Met-tRNA formyltransferase;
RNA methylation
fig|6666666.229913.peg.70 CDS CP016553.1 63966 64517 3 + 552 Type IV pilus biogenesis protein PilF CBSS-498211.3.peg.1415
fig|6666666.229913.peg.71 CDS CP016553.1 64660 65715 1 + 1056 FIG021952: putative membrane protein CBSS-498211.3.peg.1415
fig|6666666.229913.peg.72 CDS CP016553.1 65727 66830 3 + 1104 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (EC 1.17.7.1) CBSS-498211.3.peg.1415;
CBSS-83331.1.peg.3039;
Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.229913.peg.73 CDS CP016553.1 66852 68129 3 + 1278 Histidyl-tRNA synthetase (EC 6.1.1.21) CBSS-498211.3.peg.1415;
tRNA aminoacylation, His
fig|6666666.229913.peg.74 CDS CP016553.1 68140 68754 1 + 615 Mlr7403 protein CBSS-290633.1.peg.1906;
CBSS-498211.3.peg.1415
fig|6666666.229913.peg.75 CDS CP016553.1 68807 69259 2 + 453 Putative protein-S-isoprenylcysteine methyltransferase - none -
fig|6666666.229913.peg.76 CDS CP016553.1 69969 69265 -3 - 705 Chromosomal replication initiator protein DnaA Cell Division Subsystem including YidCD;
DNA replication cluster 1
fig|6666666.229913.peg.77 CDS CP016553.1 69955 70092 1 + 138 hypothetical protein - none -
fig|6666666.229913.peg.78 CDS CP016553.1 71342 70089 -2 - 1254 Uracil permease De Novo Pyrimidine Synthesis
fig|6666666.229913.peg.79 CDS CP016553.1 72092 71466 -2 - 627 Uracil phosphoribosyltransferase (EC 2.4.2.9) De Novo Pyrimidine Synthesis;
pyrimidine conversions
fig|6666666.229913.peg.80 CDS CP016553.1 74074 72227 -1 - 1848 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase
fig|6666666.229913.peg.81 CDS CP016553.1 75388 74201 -1 - 1188 ATP-dependent protease La (EC 3.4.21.53) Type I Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229913.peg.82 CDS CP016553.1 76617 75370 -3 - 1248 ATP-dependent protease La (EC 3.4.21.53) Type I Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229913.peg.83 CDS CP016553.1 77054 78808 2 + 1755 Putative sulfate permease - none -
fig|6666666.229913.peg.84 CDS CP016553.1 79724 78834 -2 - 891 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229913.peg.85 CDS CP016553.1 80716 79781 -1 - 936 hypothetical protein - none -
fig|6666666.229913.peg.86 CDS CP016553.1 81926 80742 -2 - 1185 Mannonate dehydratase (EC 4.2.1.8) D-Galacturonate and D-Glucuronate Utilization
fig|6666666.229913.peg.87 CDS CP016553.1 82701 81946 -3 - 756 Hexuronate utilization operon transcriptional repressor ExuR D-Galacturonate and D-Glucuronate Utilization
fig|6666666.229913.peg.88 CDS CP016553.1 85091 82716 -2 - 2376 Alpha-glucosidase (EC 3.2.1.20) D-Galacturonate and D-Glucuronate Utilization;
Maltose and Maltodextrin Utilization
fig|6666666.229913.peg.89 CDS CP016553.1 85720 85115 -1 - 606 TRAP-type C4-dicarboxylate transport system, large permease component TRAP Transporter collection
fig|6666666.229913.peg.90 CDS CP016553.1 86415 85732 -3 - 684 TRAP-type C4-dicarboxylate transport system, large permease component TRAP Transporter collection
fig|6666666.229913.peg.91 CDS CP016553.1 87128 88120 2 + 993 TRAP-type C4-dicarboxylate transport system, periplasmic component TRAP Transporter collection
fig|6666666.229913.peg.92 CDS CP016553.1 88175 89119 2 + 945 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) D-Galacturonate and D-Glucuronate Utilization;
D-gluconate and ketogluconates metabolism;
Entner-Doudoroff Pathway
fig|6666666.229913.peg.93 CDS CP016553.1 89131 89976 1 + 846 D-mannonate oxidoreductase (EC 1.1.1.57) D-Galacturonate and D-Glucuronate Utilization
fig|6666666.229913.peg.94 CDS CP016553.1 89988 91391 3 + 1404 Uronate isomerase (EC 5.3.1.12) D-Galacturonate and D-Glucuronate Utilization
fig|6666666.229913.peg.95 CDS CP016553.1 91400 92041 2 + 642 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) D-Galacturonate and D-Glucuronate Utilization;
Entner-Doudoroff Pathway
fig|6666666.229913.peg.96 CDS CP016553.1 93174 92128 -3 - 1047 iron chelatin ABC transporter periplasmic-binding protein - none -
fig|6666666.229913.peg.97 CDS CP016553.1 94717 93485 -1 - 1233 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) Glycine and Serine Utilization;
Pyridoxin (Vitamin B6) Biosynthesis;
Serine Biosynthesis
fig|6666666.229913.peg.98 CDS CP016553.1 95393 94737 -2 - 657 Ribose 5-phosphate isomerase A (EC 5.3.1.6) D-ribose utilization;
Pentose phosphate pathway
fig|6666666.229913.peg.99 CDS CP016553.1 96661 95492 -1 - 1170 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB CBSS-630.2.peg.3360;
Heat shock dnaK gene cluster extended;
Heme and Siroheme Biosynthesis;
Queuosine-Archaeosine Biosynthesis
fig|6666666.229913.peg.100 CDS CP016553.1 96984 96661 -3 - 324 PlcB, ORFX, ORFP, ORFB, ORFA, ldh gene - none -
fig|6666666.229913.peg.101 CDS CP016553.1 97703 97023 -2 - 681 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) Heat shock dnaK gene cluster extended;
Housecleaning nucleoside triphosphate pyrophosphatases
fig|6666666.229913.peg.102 CDS CP016553.1 98058 97729 -3 - 330 DNA uptake protein and related DNA-binding proteins - none -
fig|6666666.229913.peg.103 CDS CP016553.1 98060 98215 2 + 156 hypothetical protein - none -
fig|6666666.229913.peg.104 CDS CP016553.1 99593 98649 -2 - 945 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.229913.peg.105 CDS CP016553.1 100087 99593 -1 - 495 Lipoprotein signal peptidase (EC 3.4.23.36) Lipoprotein Biosynthesis;
Signal peptidase
fig|6666666.229913.peg.106 CDS CP016553.1 102989 100167 -2 - 2823 Isoleucyl-tRNA synthetase (EC 6.1.1.5) tRNA aminoacylation, Ile
fig|6666666.229913.peg.107 CDS CP016553.1 103275 103027 -3 - 249 FIG01055344: hypothetical protein - none -
fig|6666666.229913.peg.108 CDS CP016553.1 103501 103259 -1 - 243 putative ORF-4 - none -
fig|6666666.229913.peg.109 CDS CP016553.1 104433 103501 -3 - 933 Riboflavin kinase (EC 2.7.1.26) / FMN adenylyltransferase (EC 2.7.7.2) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin, FMN and FAD metabolism in plants;
riboflavin to FAD;
riboflavin to FAD
fig|6666666.229913.peg.110 CDS CP016553.1 106088 104511 -2 - 1578 Proposed peptidoglycan lipid II flippase MurJ Peptidoglycan lipid II flippase
fig|6666666.229913.peg.111 CDS CP016553.1 106356 106619 3 + 264 SSU ribosomal protein S20p Ribosome SSU bacterial
fig|6666666.229913.peg.112 CDS CP016553.1 107406 106729 -3 - 678 Lipoate-protein ligase A Lipoic acid metabolism
fig|6666666.229913.peg.113 CDS CP016553.1 107482 108426 1 + 945 Phosphoserine phosphatase (EC 3.1.3.3) Glycine and Serine Utilization;
Serine Biosynthesis;
Serine Biosynthesis
fig|6666666.229913.peg.114 CDS CP016553.1 108437 108928 2 + 492 FIG001943: hypothetical protein YajQ Broadly distributed proteins not in subsystems
fig|6666666.229913.peg.115 CDS CP016553.1 109057 109641 1 + 585 Peptidyl-tRNA hydrolase (EC 3.1.1.29) Cell division-ribosomal stress proteins cluster;
Sporulation-associated proteins with broader functions;
Transcription repair cluster;
Translation termination factors bacterial
fig|6666666.229913.peg.116 CDS CP016553.1 109830 110921 3 + 1092 GTP-binding and nucleic acid-binding protein YchF Universal GTPases
fig|6666666.229913.peg.117 CDS CP016553.1 111256 111837 1 + 582 Hypothetical protein VC0266 (sugar utilization related?) VC0266
fig|6666666.229913.peg.118 CDS CP016553.1 111909 112055 3 + 147 hypothetical protein - none -
fig|6666666.229913.peg.119 CDS CP016553.1 112197 112310 3 + 114 hypothetical protein - none -
fig|6666666.229913.peg.120 CDS CP016553.1 113222 112275 -2 - 948 Cysteine synthase (EC 2.5.1.47) Cysteine Biosynthesis;
Methionine Biosynthesis
fig|6666666.229913.peg.121 CDS CP016553.1 114160 113336 -1 - 825 Sulfate transporter, CysZ-type Cysteine Biosynthesis
fig|6666666.229913.peg.122 CDS CP016553.1 114301 115338 1 + 1038 Cell division protein ZipA Bacterial Cytoskeleton
fig|6666666.229913.peg.123 CDS CP016553.1 115448 115335 -2 - 114 hypothetical protein - none -
fig|6666666.229913.peg.124 CDS CP016553.1 115442 117457 2 + 2016 DNA ligase (EC 6.5.1.2) DNA Repair Base Excision
fig|6666666.229913.peg.125 CDS CP016553.1 118104 117526 -3 - 579 Thymidine kinase (EC 2.7.1.21) pyrimidine conversions
fig|6666666.229913.peg.126 CDS CP016553.1 118340 118107 -2 - 234 unknown - none -
fig|6666666.229913.peg.127 CDS CP016553.1 119433 118405 -3 - 1029 TsaD/Kae1/Qri7 protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Macromolecular synthesis operon;
YgjD and YeaZ;
YrdC-YciO-Sua5 protein family
fig|6666666.229913.peg.128 CDS CP016553.1 119623 119456 -1 - 168 hypothetical protein - none -
fig|6666666.229913.peg.129 CDS CP016553.1 119658 119873 3 + 216 SSU ribosomal protein S21p Macromolecular synthesis operon;
Ribosome SSU bacterial
fig|6666666.229913.peg.130 CDS CP016553.1 119995 121752 1 + 1758 DNA primase (EC 2.7.7.-) CBSS-349161.4.peg.2417;
Macromolecular synthesis operon
fig|6666666.229913.peg.131 CDS CP016553.1 121828 123678 1 + 1851 RNA polymerase sigma factor RpoD CBSS-349161.4.peg.2417;
Macromolecular synthesis operon;
Transcription initiation, bacterial sigma factors
fig|6666666.229913.peg.132 CDS CP016553.1 124073 124345 2 + 273 Phage integrase - none -
fig|6666666.229913.peg.133 CDS CP016553.1 124612 124746 1 + 135 hypothetical protein - none -
fig|6666666.229913.peg.134 CDS CP016553.1 125003 125278 2 + 276 Mobile element protein - none -
fig|6666666.229913.peg.135 CDS CP016553.1 125361 125501 3 + 141 Mobile element protein - none -
fig|6666666.229913.peg.136 CDS CP016553.1 125538 125786 3 + 249 Mobile element protein - none -
fig|6666666.229913.peg.137 CDS CP016553.1 126580 126323 -1 - 258 SSU ribosomal protein S17p (S11e) Ribosome SSU bacterial
fig|6666666.229913.peg.138 CDS CP016553.1 126771 126580 -3 - 192 LSU ribosomal protein L29p (L35e) - none -
fig|6666666.229913.peg.139 CDS CP016553.1 127181 126771 -2 - 411 LSU ribosomal protein L16p (L10e) - none -
fig|6666666.229913.peg.140 CDS CP016553.1 127902 127195 -3 - 708 SSU ribosomal protein S3p (S3e) Ribosome SSU bacterial
fig|6666666.229913.peg.141 CDS CP016553.1 128251 127919 -1 - 333 LSU ribosomal protein L22p (L17e) - none -
fig|6666666.229913.peg.142 CDS CP016553.1 128408 128262 -2 - 147 SSU ribosomal protein S19p (S15e) Ribosome SSU bacterial
fig|6666666.229913.peg.143 CDS CP016553.1 129384 128563 -3 - 822 LSU ribosomal protein L2p (L8e) - none -
fig|6666666.229913.peg.144 CDS CP016553.1 129707 129405 -2 - 303 LSU ribosomal protein L23p (L23Ae) - none -
fig|6666666.229913.peg.145 CDS CP016553.1 130306 129704 -1 - 603 LSU ribosomal protein L4p (L1e) - none -
fig|6666666.229913.peg.146 CDS CP016553.1 130948 130322 -1 - 627 LSU ribosomal protein L3p (L3e) - none -
fig|6666666.229913.peg.147 CDS CP016553.1 131276 130965 -2 - 312 SSU ribosomal protein S10p (S20e) Ribosome SSU bacterial
fig|6666666.229913.peg.148 CDS CP016553.1 132422 131526 -2 - 897 Transcriptional regulators, LysR family - none -
fig|6666666.229913.peg.149 CDS CP016553.1 132759 133349 3 + 591 Acetyl-CoA:acetoacetyl-CoA transferase, alpha subunit (EC 2.8.3.8) - none -
fig|6666666.229913.peg.150 CDS CP016553.1 133361 134026 2 + 666 Acetyl-CoA:acetoacetyl-CoA transferase, beta subunit (EC 2.8.3.8) - none -
fig|6666666.229913.peg.151 CDS CP016553.1 134029 135372 1 + 1344 Short chain fatty acids transporter Polyhydroxybutyrate metabolism
fig|6666666.229913.peg.152 CDS CP016553.1 135390 136571 3 + 1182 Acetyl-CoA acetyltransferase (EC 2.3.1.9) Butanol Biosynthesis;
Isoprenoid Biosynthesis;
Polyhydroxybutyrate metabolism;
Serine-glyoxylate cycle
fig|6666666.229913.peg.153 CDS CP016553.1 137136 136669 -3 - 468 Transcriptional regulator, AsnC family - none -
fig|6666666.229913.peg.154 CDS CP016553.1 138756 137227 -3 - 1530 Arginine/ornithine antiporter ArcD Arginine Deiminase Pathway;
Arginine and Ornithine Degradation;
Polyamine Metabolism
fig|6666666.229913.peg.155 CDS CP016553.1 139805 138873 -2 - 933 Carbamate kinase (EC 2.7.2.2) Arginine Deiminase Pathway;
Arginine and Ornithine Degradation;
Polyamine Metabolism
fig|6666666.229913.peg.156 CDS CP016553.1 140819 139815 -2 - 1005 Ornithine carbamoyltransferase (EC 2.1.3.3) Arginine Deiminase Pathway;
Arginine and Ornithine Degradation
fig|6666666.229913.peg.157 CDS CP016553.1 141062 142453 2 + 1392 Chloride channel protein - none -
fig|6666666.229913.peg.158 CDS CP016553.1 142456 143439 1 + 984 tRNA dihydrouridine synthase A - none -
fig|6666666.229913.peg.159 CDS CP016553.1 144487 143495 -1 - 993 Aspartate--ammonia ligase (EC 6.3.1.1) CBSS-262728.1.peg.1737;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229913.peg.160 CDS CP016553.1 144653 145105 2 + 453 Regulatory protein AsnC CBSS-262728.1.peg.1737
fig|6666666.229913.peg.161 CDS CP016553.1 145140 145898 3 + 759 Uridine phosphorylase (EC 2.4.2.3) pyrimidine conversions
fig|6666666.229913.peg.162 CDS CP016553.1 147094 146033 -1 - 1062 Putative permease PerM (= YfgO) - none -
fig|6666666.229913.peg.163 CDS CP016553.1 147168 147518 3 + 351 Arsenate reductase (EC 1.20.4.1) Anaerobic respiratory reductases;
Arsenic resistance;
Transcription repair cluster
fig|6666666.229913.peg.164 CDS CP016553.1 147709 147584 -1 - 126 hypothetical protein - none -
fig|6666666.229913.peg.165 CDS CP016553.1 148064 147702 -2 - 363 FIG00696564: hypothetical protein - none -
fig|6666666.229913.peg.166 CDS CP016553.1 148299 148015 -3 - 285 hypothetical protein - none -
fig|6666666.229913.peg.167 CDS CP016553.1 148510 149841 1 + 1332 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase Methylthiotransferases;
Ribosomal protein S12p Asp methylthiotransferase
fig|6666666.229913.peg.168 CDS CP016553.1 149966 150370 2 + 405 Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48) LMPTP YfkJ cluster;
Protein deglycation
fig|6666666.229913.peg.169 CDS CP016553.1 151383 150787 -3 - 597 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) G3E family of P-loop GTPases (metallocenter biosynthesis);
Peptidyl-prolyl cis-trans isomerase;
Potassium homeostasis
fig|6666666.229913.peg.170 CDS CP016553.1 152197 151478 -1 - 720 probable periplasmic protein NMA1059 - none -
fig|6666666.229913.peg.171 CDS CP016553.1 152682 152248 -3 - 435 Ribonuclease E inhibitor RraB RNA processing and degradation, bacterial
fig|6666666.229913.peg.172 CDS CP016553.1 153172 152777 -1 - 396 Large-conductance mechanosensitive channel Potassium homeostasis
fig|6666666.229913.peg.173 CDS CP016553.1 154658 153282 -2 - 1377 Trk system potassium uptake protein TrkA Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Hyperosmotic potassium uptake;
Potassium homeostasis;
Potassium homeostasis
fig|6666666.229913.peg.174 CDS CP016553.1 156037 154682 -1 - 1356 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) ## SSU rRNA m5C967 Conserved gene cluster associated with Met-tRNA formyltransferase;
RNA methylation
fig|6666666.229913.peg.175 CDS CP016553.1 156996 156037 -3 - 960 Methionyl-tRNA formyltransferase (EC 2.1.2.9) Conserved gene cluster associated with Met-tRNA formyltransferase;
Translation initiation factors bacterial
fig|6666666.229913.peg.176 CDS CP016553.1 157571 157059 -2 - 513 Peptide deformylase (EC 3.5.1.88) Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Translation termination factors bacterial
fig|6666666.229913.peg.178 CDS CP016553.1 163855 163298 -1 - 558 D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase (EC 3.1.1.-) Capsular heptose biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.229913.peg.179 CDS CP016553.1 164051 165088 2 + 1038 Methionine ABC transporter ATP-binding protein Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229913.peg.180 CDS CP016553.1 165078 165755 3 + 678 Methionine ABC transporter permease protein Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229913.peg.181 CDS CP016553.1 165790 166632 1 + 843 Methionine ABC transporter substrate-binding protein Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229913.peg.182 CDS CP016553.1 166738 167235 1 + 498 Phospholipid-binding protein - none -
fig|6666666.229913.peg.183 CDS CP016553.1 167354 167830 2 + 477 tRNA (cytidine(34)-2@1-O)-methyltransferase (EC 2.1.1.207) Biotin synthesis cluster;
RNA methylation
fig|6666666.229913.peg.184 CDS CP016553.1 168801 167926 -3 - 876 Membrane protein LAPB - none -
fig|6666666.229913.peg.185 CDS CP016553.1 168924 168811 -3 - 114 hypothetical protein - none -
fig|6666666.229913.peg.186 CDS CP016553.1 168934 169548 1 + 615 GTP-binding protein EngB Universal GTPases
fig|6666666.229913.peg.187 CDS CP016553.1 169663 171198 1 + 1536 MG(2+) CHELATASE FAMILY PROTEIN / ComM-related protein - none -
fig|6666666.229913.peg.188 CDS CP016553.1 172037 171210 -2 - 828 Putative periplasmic protein YibQ, distant homology with nucleoside diphosphatase and polysaccharide deacetylase CBSS-224911.1.peg.435;
Phosphoglycerate mutase protein family
fig|6666666.229913.peg.189 CDS CP016553.1 173251 172034 -1 - 1218 Periplasmic septal ring factor with murein hydrolase activity EnvC/YibP CBSS-224911.1.peg.435;
Glutaredoxins;
Phosphoglycerate mutase protein family
fig|6666666.229913.peg.190 CDS CP016553.1 175159 173501 -1 - 1659 Phosphoglucosamine mutase (EC 5.4.2.10) Sialic Acid Metabolism;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229913.peg.191 CDS CP016553.1 175466 176149 2 + 684 Phosphoglycerate mutase (EC 5.4.2.1) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis;
Phosphoglycerate mutase protein family
fig|6666666.229913.peg.192 CDS CP016553.1 176332 177003 1 + 672 VgrG-3 protein - none -
fig|6666666.229913.peg.193 CDS CP016553.1 177007 179184 1 + 2178 Probable phospholipase protein - none -
fig|6666666.229913.peg.194 CDS CP016553.1 179220 179942 3 + 723 miscellaneous; hypothetical/partial homology - none -
fig|6666666.229913.peg.195 CDS CP016553.1 180149 180334 2 + 186 hypothetical protein - none -
fig|6666666.229913.peg.196 CDS CP016553.1 181881 180565 -3 - 1317 Magnesium and cobalt efflux protein CorC CBSS-56780.10.peg.1536;
Copper homeostasis: copper tolerance;
Glycyl-tRNA synthetase containing cluster;
Magnesium transport;
tRNA-methylthiotransferase containing cluster
fig|6666666.229913.peg.197 CDS CP016553.1 182496 181972 -3 - 525 FIG00696143: hypothetical protein - none -
fig|6666666.229913.peg.198 CDS CP016553.1 183310 182528 -1 - 783 Putative deoxyribonuclease YcfH YcfH
fig|6666666.229913.peg.199 CDS CP016553.1 184297 183314 -1 - 984 DNA polymerase III delta prime subunit (EC 2.7.7.7) - none -
fig|6666666.229913.peg.200 CDS CP016553.1 184926 184294 -3 - 633 Thymidylate kinase (EC 2.7.4.9) pyrimidine conversions
fig|6666666.229913.peg.201 CDS CP016553.1 185971 184928 -1 - 1044 FIG004453: protein YceG like CBSS-323097.3.peg.2594;
Cluster containing Alanyl-tRNA synthetase;
tRNA modification Bacteria
fig|6666666.229913.peg.202 CDS CP016553.1 186448 186110 -1 - 339 Nitrogen regulatory protein P-II Ammonia assimilation
fig|6666666.229913.peg.203 CDS CP016553.1 187282 186524 -1 - 759 Transcriptional regulators of sugar metabolism - none -
fig|6666666.229913.peg.204 CDS CP016553.1 187559 188380 2 + 822 D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) Polyhydroxybutyrate metabolism
fig|6666666.229913.peg.205 CDS CP016553.1 188383 189627 1 + 1245 Predicted pyridoxine biosynthesis protein (probably from glycolaldehide) - none -
fig|6666666.229913.peg.206 CDS CP016553.1 189624 190256 3 + 633 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases - none -
fig|6666666.229913.peg.207 CDS CP016553.1 190259 191035 2 + 777 Hydroxypyruvate isomerase (EC 5.3.1.22) Glycerate metabolism
fig|6666666.229913.peg.208 CDS CP016553.1 191124 192476 3 + 1353 Low-affinity gluconate/H+ symporter GntU D-gluconate and ketogluconates metabolism
fig|6666666.229913.peg.209 CDS CP016553.1 192501 193841 3 + 1341 FIG00782214: hypothetical protein - none -
fig|6666666.229913.peg.210 CDS CP016553.1 194012 194551 2 + 540 Metal-dependent hydrolase - none -
fig|6666666.229913.peg.211 CDS CP016553.1 194651 194523 -2 - 129 hypothetical protein - none -
fig|6666666.229913.peg.212 CDS CP016553.1 194740 196395 1 + 1656 Lysophospholipase (EC 3.1.1.5) Triacylglycerol metabolism
fig|6666666.229913.peg.213 CDS CP016553.1 196589 197407 2 + 819 HMP-PP hydrolase (pyridoxal phosphatase) Cof, detected in genetic screen for thiamin metabolic genes (PMID:15292217) - none -
fig|6666666.229913.peg.214 CDS CP016553.1 200213 197613 -2 - 2601 DNA mismatch repair protein MutS DNA repair, bacterial MutL-MutS system;
DNA repair system including RecA, MutS and a hypothetical protein
fig|6666666.229913.peg.215 CDS CP016553.1 201084 200857 -3 - 228 hypothetical protein - none -
fig|6666666.229913.peg.216 CDS CP016553.1 203129 201810 -2 - 1320 hypothetical protein - none -
fig|6666666.229913.peg.217 CDS CP016553.1 204504 203131 -3 - 1374 hypothetical protein - none -
fig|6666666.229913.peg.218 CDS CP016553.1 204894 204559 -3 - 336 hypothetical protein - none -
fig|6666666.229913.peg.219 CDS CP016553.1 205744 204986 -1 - 759 rRNA small subunit methyltransferase J - none -
fig|6666666.229913.peg.220 CDS CP016553.1 206843 205746 -2 - 1098 tRNA (uracil(54)-C5)-methyltransferase (EC 2.1.1.35) RNA methylation;
tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229913.peg.221 CDS CP016553.1 207242 206913 -2 - 330 Protein yifE - none -
fig|6666666.229913.peg.222 CDS CP016553.1 207919 207302 -1 - 618 Periplasmic thiol:disulfide interchange protein DsbA Biogenesis of c-type cytochromes;
Periplasmic disulfide interchange
fig|6666666.229913.peg.223 CDS CP016553.1 208204 207938 -1 - 267 Protein yihD - none -
fig|6666666.229913.peg.224 CDS CP016553.1 208288 208872 1 + 585 Molybdopterin-guanine dinucleotide biosynthesis protein MobA Molybdenum cofactor biosynthesis;
ar-431-EC Molybdopterin-guanine dinucleotide biosynthesis
fig|6666666.229913.peg.225 CDS CP016553.1 208971 209501 3 + 531 ATPases involved in chromosome partitioning - none -
fig|6666666.229913.peg.226 CDS CP016553.1 209613 211142 3 + 1530 Fructose-specific phosphocarrier protein HPr (EC 2.7.1.69) / PTS system, fructose-specific IIA component (EC 2.7.1.69) Fructose utilization;
Fructose utilization
fig|6666666.229913.peg.227 CDS CP016553.1 211145 212086 2 + 942 1-phosphofructokinase (EC 2.7.1.56) Fructose utilization
fig|6666666.229913.peg.228 CDS CP016553.1 212091 213755 3 + 1665 PTS system, fructose-specific IIB component (EC 2.7.1.69) / PTS system, fructose-specific IIC component (EC 2.7.1.69) Fructose utilization;
Fructose utilization
fig|6666666.229913.peg.229 CDS CP016553.1 213819 214055 3 + 237 hypothetical protein - none -
fig|6666666.229913.peg.230 CDS CP016553.1 214114 214251 1 + 138 hypothetical protein - none -
fig|6666666.229913.peg.231 CDS CP016553.1 214661 214260 -2 - 402 LysR family regulatory protein CidR Murein hydrolase regulation and cell death
fig|6666666.229913.peg.232 CDS CP016553.1 214901 215227 2 + 327 NAD(P)H oxidoreductase YRKL (EC 1.6.99.-) @ Putative NADPH-quinone reductase (modulator of drug activity B) @ Flavodoxin 2 Flavodoxin;
Flavodoxin
fig|6666666.229913.peg.233 CDS CP016553.1 215422 215646 1 + 225 hypothetical protein - none -
fig|6666666.229913.peg.234 CDS CP016553.1 217552 216923 -1 - 630 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) - none -
fig|6666666.229913.peg.235 CDS CP016553.1 217792 218805 1 + 1014 Mobile element protein - none -
fig|6666666.229913.peg.236 CDS CP016553.1 219282 219034 -3 - 249 Mobile element protein - none -
fig|6666666.229913.peg.237 CDS CP016553.1 219459 219319 -3 - 141 Mobile element protein - none -
fig|6666666.229913.peg.238 CDS CP016553.1 219817 219542 -1 - 276 Mobile element protein - none -
fig|6666666.229913.peg.239 CDS CP016553.1 220208 220074 -2 - 135 hypothetical protein - none -
fig|6666666.229913.peg.240 CDS CP016553.1 220524 220652 3 + 129 hypothetical protein - none -
fig|6666666.229913.peg.241 CDS CP016553.1 222558 220948 -3 - 1611 Protein TadG, associated with Flp pilus assembly Widespread colonization island
fig|6666666.229913.peg.242 CDS CP016553.1 223074 222574 -3 - 501 Flp pilus assembly surface protein TadF, ATP/GTP-binding motif Widespread colonization island
fig|6666666.229913.peg.243 CDS CP016553.1 224533 223811 -1 - 723 Flp pilus assembly protein TadD, contains TPR repeat Widespread colonization island
fig|6666666.229913.peg.244 CDS CP016553.1 225428 224562 -2 - 867 Type II/IV secretion system protein TadC, associated with Flp pilus assembly Widespread colonization island
fig|6666666.229913.peg.245 CDS CP016553.1 226312 225425 -1 - 888 Flp pilus assembly protein TadB Widespread colonization island
fig|6666666.229913.peg.246 CDS CP016553.1 227592 226312 -3 - 1281 Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily Widespread colonization island
fig|6666666.229913.peg.247 CDS CP016553.1 228730 227606 -1 - 1125 Type II/IV secretion system ATPase TadZ/CpaE, associated with Flp pilus assembly Widespread colonization island
fig|6666666.229913.peg.248 CDS CP016553.1 229249 228746 -1 - 504 Flp pilus assembly protein RcpB Widespread colonization island
fig|6666666.229913.peg.249 CDS CP016553.1 230508 229246 -3 - 1263 Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly Widespread colonization island
fig|6666666.229913.peg.250 CDS CP016553.1 231454 230630 -1 - 825 Flp pilus assembly protein RcpC/CpaB Widespread colonization island
fig|6666666.229913.peg.251 CDS CP016553.1 231681 231505 -3 - 177 Type IV prepilin peptidase TadV/CpaA Widespread colonization island
fig|6666666.229913.peg.252 CDS CP016553.1 232504 232277 -1 - 228 Flp pilus assembly protein, pilin Flp Widespread colonization island
fig|6666666.229913.peg.253 CDS CP016553.1 232470 232583 3 + 114 hypothetical protein - none -
fig|6666666.229913.peg.254 CDS CP016553.1 233080 233535 1 + 456 Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly CBSS-56780.10.peg.1536;
Glycyl-tRNA synthetase containing cluster;
tRNA-methylthiotransferase containing cluster
fig|6666666.229913.peg.255 CDS CP016553.1 233697 234395 3 + 699 unknown - none -
fig|6666666.229913.peg.256 CDS CP016553.1 234399 236321 3 + 1923 Predicted P-loop ATPase fused to an acetyltransferase COG1444 tRNA modification Archaea;
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229913.peg.257 CDS CP016553.1 236362 236535 1 + 174 hypothetical protein - none -
fig|6666666.229913.peg.258 CDS CP016553.1 236992 240462 1 + 3471 Transcription-repair coupling factor Cell division-ribosomal stress proteins cluster;
Transcription factors bacterial;
Transcription repair cluster
fig|6666666.229913.peg.259 CDS CP016553.1 240551 241135 2 + 585 Phosphoheptose isomerase 1 (EC 5.3.1.-) Capsular heptose biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.229913.peg.260 CDS CP016553.1 241276 242010 1 + 735 Arginine ABC transporter, ATP-binding protein ArtP Arginine and Ornithine Degradation
fig|6666666.229913.peg.261 CDS CP016553.1 242031 242750 3 + 720 Arginine ABC transporter, periplasmic arginine-binding protein ArtI Arginine and Ornithine Degradation
fig|6666666.229913.peg.262 CDS CP016553.1 242755 243417 1 + 663 Arginine ABC transporter, permease protein ArtQ Arginine and Ornithine Degradation
fig|6666666.229913.peg.263 CDS CP016553.1 243420 244103 3 + 684 Arginine ABC transporter, permease protein ArtM Arginine and Ornithine Degradation
fig|6666666.229913.peg.264 CDS CP016553.1 244645 246243 1 + 1599 Carbon starvation protein A Carbon Starvation
fig|6666666.229913.peg.265 CDS CP016553.1 246507 246965 3 + 459 Cell division protein MraZ 16S rRNA modification within P site of ribosome;
Bacterial Cell Division;
Bacterial Cytoskeleton
fig|6666666.229913.peg.266 CDS CP016553.1 247075 248043 1 + 969 rRNA small subunit methyltransferase H 16S rRNA modification within P site of ribosome;
Bacterial Cell Division
fig|6666666.229913.peg.267 CDS CP016553.1 248043 248360 3 + 318 Cell division protein FtsL 16S rRNA modification within P site of ribosome;
Bacterial Cell Division;
Bacterial Cytoskeleton;
Stationary phase repair cluster
fig|6666666.229913.peg.268 CDS CP016553.1 248378 250201 2 + 1824 Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129) 16S rRNA modification within P site of ribosome;
Bacterial Cell Division;
Bacterial Cytoskeleton;
CBSS-83331.1.peg.3039;
Peptidoglycan Biosynthesis
fig|6666666.229913.peg.269 CDS CP016553.1 250219 251685 1 + 1467 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo
fig|6666666.229913.peg.270 CDS CP016553.1 251690 253069 2 + 1380 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase (EC 6.3.2.10) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo
fig|6666666.229913.peg.271 CDS CP016553.1 253063 254148 1 + 1086 Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC 2.7.8.13) Peptidoglycan Biosynthesis
fig|6666666.229913.peg.272 CDS CP016553.1 254175 255479 3 + 1305 UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC 6.3.2.9) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo
fig|6666666.229913.peg.273 CDS CP016553.1 255494 256684 2 + 1191 Cell division protein FtsW Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ
fig|6666666.229913.peg.274 CDS CP016553.1 256724 257788 2 + 1065 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) Peptidoglycan Biosynthesis;
cell division core of larger cluster
fig|6666666.229913.peg.275 CDS CP016553.1 257859 259289 3 + 1431 UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo;
cell division cluster containing FtsQ
fig|6666666.229913.peg.276 CDS CP016553.1 259302 260231 3 + 930 D-alanine--D-alanine ligase (EC 6.3.2.4) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo;
cell division cluster containing FtsQ
fig|6666666.229913.peg.277 CDS CP016553.1 260228 260995 2 + 768 Cell division protein FtsQ Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ;
cell division core of larger cluster
fig|6666666.229913.peg.278 CDS CP016553.1 261020 262300 2 + 1281 Cell division protein FtsA Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ;
cell division core of larger cluster
fig|6666666.229913.peg.279 CDS CP016553.1 262384 263664 1 + 1281 Cell division protein FtsZ (EC 3.4.24.-) Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ;
cell division core of larger cluster
fig|6666666.229913.peg.280 CDS CP016553.1 263702 264619 2 + 918 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC 3.5.1.108) KDO2-Lipid A biosynthesis
fig|6666666.229913.peg.281 CDS CP016553.1 264818 265978 2 + 1161 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) Chorismate Synthesis;
Chorismate Synthesis;
Phenylalanine and Tyrosine Branches from Chorismate;
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229913.peg.282 CDS CP016553.1 266112 267992 3 + 1881 Chaperone protein HtpG Protein chaperones
fig|6666666.229913.peg.283 CDS CP016553.1 268058 268402 2 + 345 FIG138056: a glutathione-dependent thiol reductase A Glutathione-dependent Thiol Reductase Associated with a Step in Lysine Biosynthesis;
CBSS-584.1.peg.1352
fig|6666666.229913.peg.284 CDS CP016553.1 268539 269672 3 + 1134 N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18) A Glutathione-dependent Thiol Reductase Associated with a Step in Lysine Biosynthesis;
CBSS-584.1.peg.1352;
Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229913.peg.285 CDS CP016553.1 269674 270354 1 + 681 FIG009095: D,D-carboxypeptidase family protein CBSS-584.1.peg.1352
fig|6666666.229913.peg.286 CDS CP016553.1 270600 271223 3 + 624 ADP-ribose pyrophosphatase (EC 3.6.1.13) CBSS-216591.1.peg.168;
NAD and NADP cofactor biosynthesis global;
Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229913.peg.287 CDS CP016553.1 271274 272098 2 + 825 3@1,5@1-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17) cAMP signaling in bacteria
fig|6666666.229913.peg.288 CDS CP016553.1 273436 272609 -1 - 828 FIG00711691: hypothetical protein - none -
fig|6666666.229913.peg.289 CDS CP016553.1 273873 273409 -3 - 465 FIG00710847: hypothetical protein - none -
fig|6666666.229913.peg.290 CDS CP016553.1 274095 274925 3 + 831 Queuosine Biosynthesis QueC ATPase Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229913.peg.291 CDS CP016553.1 275050 276264 1 + 1215 ATPase component BioM of energizing module of biotin ECF transporter Biotin biosynthesis;
Biotin synthesis cluster
fig|6666666.229913.peg.292 CDS CP016553.1 277371 276343 -3 - 1029 Alcohol dehydrogenase (EC 1.1.1.1) 5-FCL-like protein;
Butanol Biosynthesis;
Fermentations: Mixed acid;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229913.peg.293 CDS CP016553.1 277642 279780 1 + 2139 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) RNA methylation
fig|6666666.229913.peg.294 CDS CP016553.1 280221 279877 -3 - 345 Fumarate reductase subunit D Succinate dehydrogenase
fig|6666666.229913.peg.295 CDS CP016553.1 280536 280231 -3 - 306 Fumarate reductase subunit C Succinate dehydrogenase
fig|6666666.229913.peg.296 CDS CP016553.1 281404 280634 -1 - 771 Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) 5-FCL-like protein;
Serine-glyoxylate cycle;
Succinate dehydrogenase;
TCA Cycle
fig|6666666.229913.peg.297 CDS CP016553.1 283217 281409 -2 - 1809 Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) Serine-glyoxylate cycle;
Succinate dehydrogenase;
TCA Cycle
fig|6666666.229913.peg.298 CDS CP016553.1 283461 283273 -3 - 189 hypothetical protein - none -
fig|6666666.229913.peg.299 CDS CP016553.1 283526 284497 2 + 972 Translation elongation factor P Lys34:lysine transferase Translation elongation factor P lysylation
fig|6666666.229913.peg.300 CDS CP016553.1 285330 284563 -3 - 768 Iron(III) dicitrate transport ATP-binding protein FecE (TC 3.A.1.14.1) - none -
fig|6666666.229913.peg.301 CDS CP016553.1 286313 285330 -2 - 984 Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1) - none -
fig|6666666.229913.peg.302 CDS CP016553.1 287302 286313 -1 - 990 Iron(III) dicitrate transport system permease protein FecC (TC 3.A.1.14.1) - none -
fig|6666666.229913.peg.303 CDS CP016553.1 288195 287302 -3 - 894 Iron(III) dicitrate transport system, periplasmic iron-binding protein FecB (TC 3.A.1.14.1) - none -
fig|6666666.229913.peg.304 CDS CP016553.1 289334 288264 -2 - 1071 Phosphoesterase (EC 3.1.-.-) - none -
fig|6666666.229913.peg.305 CDS CP016553.1 289405 289848 1 + 444 FIG000557: hypothetical protein co-occurring with RecR DNA processing cluster
fig|6666666.229913.peg.306 CDS CP016553.1 289933 290535 1 + 603 Recombination protein RecR DNA processing cluster;
DNA repair, bacterial RecFOR pathway
fig|6666666.229913.peg.307 CDS CP016553.1 290567 292504 2 + 1938 DNA topoisomerase III (EC 5.99.1.2) DNA processing cluster;
DNA topoisomerases, Type I, ATP-independent
fig|6666666.229913.peg.308 CDS CP016553.1 292677 293006 3 + 330 Preprotein translocase subunit SecG (TC 3.A.5.1.1) CBSS-331978.3.peg.2915;
Murein hydrolase regulation and cell death
fig|6666666.229913.peg.309 CDS CP016553.1 293372 293226 -2 - 147 hypothetical protein - none -
fig|6666666.229913.peg.310 CDS CP016553.1 293443 293643 1 + 201 hypothetical protein - none -
fig|6666666.229913.peg.311 CDS CP016553.1 294473 293700 -2 - 774 Monofunctional biosynthetic peptidoglycan transglycosylase (EC 2.4.2.-) Peptidoglycan Biosynthesis
fig|6666666.229913.peg.312 CDS CP016553.1 294759 294451 -3 - 309 Transcriptional repressor protein TrpR Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate);
Tryptophan synthesis
fig|6666666.229913.peg.313 CDS CP016553.1 297008 294792 -2 - 2217 Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) Murein Hydrolases
fig|6666666.229913.peg.314 CDS CP016553.1 297830 297534 -2 - 297 YciL protein Broadly distributed proteins not in subsystems;
CBSS-211586.9.peg.2729
fig|6666666.229913.peg.315 CDS CP016553.1 298303 297833 -1 - 471 Acyl-CoA thioesterase YciA, involved in membrane biogenesis CBSS-211586.9.peg.2729;
Intracellular septation in Enterobacteria
fig|6666666.229913.peg.316 CDS CP016553.1 298858 298307 -1 - 552 Intracellular septation protein IspA CBSS-211586.9.peg.2729;
Intracellular septation in Enterobacteria
fig|6666666.229913.peg.317 CDS CP016553.1 299622 298864 -3 - 759 Membrane protein involved in the export of O-antigen and teichoic acid - none -
fig|6666666.229913.peg.318 CDS CP016553.1 299895 300542 3 + 648 Outer membrane protein W precursor - none -
fig|6666666.229913.peg.319 CDS CP016553.1 302286 300610 -3 - 1677 DNA repair protein RecN DNA repair, bacterial
fig|6666666.229913.peg.320 CDS CP016553.1 303277 302360 -1 - 918 NAD kinase (EC 2.7.1.23) NAD and NADP cofactor biosynthesis global
fig|6666666.229913.peg.321 CDS CP016553.1 303450 303322 -3 - 129 hypothetical protein - none -
fig|6666666.229913.peg.322 CDS CP016553.1 303418 303996 1 + 579 Heat shock protein GrpE GroEL GroES;
Heat shock dnaK gene cluster extended;
Protein chaperones
fig|6666666.229913.peg.323 CDS CP016553.1 307177 304106 -1 - 3072 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229913.peg.324 CDS CP016553.1 309385 307367 -1 - 2019 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) CBSS-354.1.peg.876;
RNA methylation;
Riboflavin, FMN and FAD metabolism in plants;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229913.peg.325 CDS CP016553.1 309555 310775 3 + 1221 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41) Fatty Acid Biosynthesis FASII
fig|6666666.229913.peg.326 CDS CP016553.1 310890 310756 -3 - 135 hypothetical protein - none -
fig|6666666.229913.peg.327 CDS CP016553.1 310916 312763 2 + 1848 Aerobic respiration control sensor protein arcB (EC 2.7.3.-) - none -
fig|6666666.229913.peg.328 CDS CP016553.1 313848 312838 -3 - 1011 Galactose/methyl galactoside ABC transport system, permease protein MglC (TC 3.A.1.2.3) Lactose and Galactose Uptake and Utilization
fig|6666666.229913.peg.329 CDS CP016553.1 314908 313826 -1 - 1083 Galactose/methyl galactoside ABC transport system, ATP-binding protein MglA (EC 3.6.3.17) Lactose and Galactose Uptake and Utilization
fig|6666666.229913.peg.330 CDS CP016553.1 315394 314915 -1 - 480 Galactose/methyl galactoside ABC transport system, ATP-binding protein MglA (EC 3.6.3.17) Lactose and Galactose Uptake and Utilization
fig|6666666.229913.peg.331 CDS CP016553.1 316461 315469 -3 - 993 Galactose/methyl galactoside ABC transport system, D-galactose-binding periplasmic protein MglB (TC 3.A.1.2.3) Bacterial Chemotaxis;
Lactose and Galactose Uptake and Utilization
fig|6666666.229913.peg.332 CDS CP016553.1 317689 316676 -1 - 1014 Galactose operon repressor, GalR-LacI family of transcriptional regulators Lactose and Galactose Uptake and Utilization
fig|6666666.229913.peg.333 CDS CP016553.1 317931 318974 3 + 1044 Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10) Lactose and Galactose Uptake and Utilization
fig|6666666.229913.peg.334 CDS CP016553.1 319042 320196 1 + 1155 Galactokinase (EC 2.7.1.6) Lactose and Galactose Uptake and Utilization
fig|6666666.229913.peg.335 CDS CP016553.1 320190 321221 3 + 1032 Aldose 1-epimerase (EC 5.1.3.3) Lactose and Galactose Uptake and Utilization;
Maltose and Maltodextrin Utilization
fig|6666666.229913.peg.336 CDS CP016553.1 322985 321486 -2 - 1500 Putative ATP /GTP binding protein - none -
fig|6666666.229913.peg.337 CDS CP016553.1 324697 323264 -1 - 1434 2-oxoglutarate/malate translocator - none -
fig|6666666.229913.peg.338 CDS CP016553.1 326096 324684 -2 - 1413 2-(5@1@1-triphosphoribosyl)-3@1-dephosphocoenzyme-A synthase (EC 2.7.8.25) Citrate Metabolism, Transport, and Regulation
fig|6666666.229913.peg.339 CDS CP016553.1 327792 326290 -3 - 1503 Citrate lyase alpha chain (EC 4.1.3.6) Citrate Metabolism, Transport, and Regulation
fig|6666666.229913.peg.340 CDS CP016553.1 328682 327807 -2 - 876 Citrate lyase beta chain (EC 4.1.3.6) Citrate Metabolism, Transport, and Regulation
fig|6666666.229913.peg.341 CDS CP016553.1 328966 328679 -1 - 288 Citrate lyase gamma chain, acyl carrier protein (EC 4.1.3.6) Citrate Metabolism, Transport, and Regulation;
TCA Cycle
fig|6666666.229913.peg.342 CDS CP016553.1 330013 329006 -1 - 1008 [Citrate [pro-3S]-lyase] ligase (EC 6.2.1.22) Citrate Metabolism, Transport, and Regulation
fig|6666666.229913.peg.343 CDS CP016553.1 330179 330051 -2 - 129 hypothetical protein - none -
fig|6666666.229913.peg.344 CDS CP016553.1 330259 331155 1 + 897 Magnesium and cobalt efflux protein CorC CBSS-56780.10.peg.1536;
Copper homeostasis: copper tolerance;
Glycyl-tRNA synthetase containing cluster;
Magnesium transport;
tRNA-methylthiotransferase containing cluster
fig|6666666.229913.peg.345 CDS CP016553.1 331546 333090 1 + 1545 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE Copper homeostasis: copper tolerance;
Lipoprotein Biosynthesis;
tRNA-methylthiotransferase containing cluster;
tRNA-methylthiotransferase containing cluster
fig|6666666.229913.peg.346 CDS CP016553.1 333371 333153 -2 - 219 Translation initiation factor 1 Translation initiation factors bacterial
fig|6666666.229913.peg.347 CDS CP016553.1 333426 333548 3 + 123 hypothetical protein - none -
fig|6666666.229913.peg.348 CDS CP016553.1 333591 334898 3 + 1308 Peptidase B (EC 3.4.11.23) Aminopeptidases (EC 3.4.11.-)
fig|6666666.229913.peg.349 CDS CP016553.1 334910 335335 2 + 426 Nucleoside diphosphate kinase (EC 2.7.4.6) CBSS-498211.3.peg.1415;
Purine conversions;
pyrimidine conversions
fig|6666666.229913.peg.350 CDS CP016553.1 335471 336616 2 + 1146 Beta-hexosaminidase (EC 3.2.1.52) Chitin and N-acetylglucosamine utilization
fig|6666666.229913.peg.351 CDS CP016553.1 336724 336879 1 + 156 Mobile element protein - none -
fig|6666666.229913.peg.352 CDS CP016553.1 336928 337095 1 + 168 hypothetical protein - none -
fig|6666666.229913.peg.353 CDS CP016553.1 338415 337246 -3 - 1170 Lipoprotein NlpD Stationary phase repair cluster
fig|6666666.229913.peg.354 CDS CP016553.1 338623 338432 -1 - 192 Cobalamin biosynthesis protein CobN and related Mg-chelatases - none -
fig|6666666.229913.peg.355 CDS CP016553.1 339213 338638 -3 - 576 FIG139438: lipoprotein B Stationary phase repair cluster
fig|6666666.229913.peg.356 CDS CP016553.1 339981 339241 -3 - 741 5-nucleotidase SurE (EC 3.1.3.5) @ Exopolyphosphatase (EC 3.6.1.11) Housecleaning nucleoside triphosphate pyrophosphatases;
Phosphate metabolism;
Polyphosphate;
Stationary phase repair cluster
fig|6666666.229913.peg.357 CDS CP016553.1 341024 340014 -2 - 1011 tRNA pseudouridine 13 synthase (EC 4.2.1.-) Stationary phase repair cluster;
tRNA modification Archaea;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229913.peg.358 CDS CP016553.1 341500 341021 -1 - 480 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis;
Stationary phase repair cluster
fig|6666666.229913.peg.359 CDS CP016553.1 342192 341497 -3 - 696 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC 2.7.7.60) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis;
Stationary phase repair cluster
fig|6666666.229913.peg.360 CDS CP016553.1 342470 342192 -2 - 279 Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage Bacterial Cell Division;
Bacterial Cytoskeleton;
Cell division-ribosomal stress proteins cluster;
Stationary phase repair cluster
fig|6666666.229913.peg.361 CDS CP016553.1 342622 343296 1 + 675 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) Conserved gene cluster associated with Met-tRNA formyltransferase;
Pentose phosphate pathway;
Riboflavin synthesis cluster
fig|6666666.229913.peg.362 CDS CP016553.1 343299 343973 3 + 675 Phosphoglycolate phosphatase (EC 3.1.3.18) 2-phosphoglycolate salvage;
Glycolate, glyoxylate interconversions
fig|6666666.229913.peg.363 CDS CP016553.1 344467 345471 1 + 1005 Tryptophanyl-tRNA synthetase (EC 6.1.1.2) tRNA aminoacylation, Trp
fig|6666666.229913.peg.364 CDS CP016553.1 346202 345558 -2 - 645 3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster;
riboflavin to FAD
fig|6666666.229913.peg.365 CDS CP016553.1 347504 346728 -2 - 777 Sodium-dependent transporter - none -
fig|6666666.229913.peg.366 CDS CP016553.1 348229 347498 -1 - 732 Sodium-dependent transporter - none -
fig|6666666.229913.peg.367 CDS CP016553.1 348648 348923 3 + 276 tRNA pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses;
tRNA modification Archaea;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229913.peg.368 CDS CP016553.1 348925 349641 1 + 717 Mg(2+) transport ATPase protein C Magnesium transport
fig|6666666.229913.peg.369 CDS CP016553.1 350023 349895 -1 - 129 hypothetical protein - none -
fig|6666666.229913.peg.370 CDS CP016553.1 351770 350757 -2 - 1014 Mobile element protein - none -
fig|6666666.229913.peg.372 CDS CP016553.1 357741 358694 3 + 954 Transaldolase (EC 2.2.1.2) Fructose utilization;
Pentose phosphate pathway
fig|6666666.229913.peg.373 CDS CP016553.1 358713 360824 3 + 2112 Transketolase (EC 2.2.1.1) Pentose phosphate pathway
fig|6666666.229913.peg.374 CDS CP016553.1 361282 360893 -1 - 390 Endoribonuclease L-PSP - none -
fig|6666666.229913.peg.375 CDS CP016553.1 361813 361355 -1 - 459 Regulatory protein RecX DNA repair system including RecA, MutS and a hypothetical protein;
RecA and RecX
fig|6666666.229913.peg.376 CDS CP016553.1 362953 361895 -1 - 1059 RecA protein DNA repair, bacterial;
DNA repair, bacterial RecFOR pathway;
DNA repair system including RecA, MutS and a hypothetical protein;
RecA and RecX
fig|6666666.229913.peg.377 CDS CP016553.1 365026 363101 -1 - 1926 Glutathione-regulated potassium-efflux system ATP-binding protein Potassium homeostasis
fig|6666666.229913.peg.378 CDS CP016553.1 365107 365724 1 + 618 Multiple antibiotic resistance protein marC - none -
fig|6666666.229913.peg.379 CDS CP016553.1 365911 368562 1 + 2652 Putative uncharacterized protein ydbH - none -
fig|6666666.229913.peg.380 CDS CP016553.1 368559 368786 3 + 228 FIG00354920: hypothetical protein - none -
fig|6666666.229913.peg.381 CDS CP016553.1 369586 369984 1 + 399 Integrase - none -
fig|6666666.229913.peg.382 CDS CP016553.1 370396 370247 -1 - 150 hypothetical protein - none -
fig|6666666.229913.peg.383 CDS CP016553.1 371694 370522 -3 - 1173 miscellaneous; hypothetical/partial homology - none -
fig|6666666.229913.peg.384 CDS CP016553.1 372824 371766 -2 - 1059 probable lipoprotein - none -
fig|6666666.229913.peg.385 CDS CP016553.1 373987 372920 -1 - 1068 Probable phospholipase protein - none -
fig|6666666.229913.peg.386 CDS CP016553.1 375123 373984 -3 - 1140 Probable phospholipase protein - none -
fig|6666666.229913.peg.387 CDS CP016553.1 375508 375200 -1 - 309 Mobile element protein - none -
fig|6666666.229913.peg.388 CDS CP016553.1 375687 375553 -3 - 135 hypothetical protein - none -
fig|6666666.229913.peg.389 CDS CP016553.1 376822 375692 -1 - 1131 hypothetical protein - none -
fig|6666666.229913.peg.390 CDS CP016553.1 379054 377303 -1 - 1752 hypothetical protein - none -
fig|6666666.229913.peg.391 CDS CP016553.1 380279 379041 -2 - 1239 hypothetical protein - none -
fig|6666666.229913.peg.392 CDS CP016553.1 380575 380411 -1 - 165 hypothetical protein - none -
fig|6666666.229913.peg.393 CDS CP016553.1 381248 380742 -2 - 507 S-ribosylhomocysteine lyase (EC 4.4.1.21) / Autoinducer-2 production protein LuxS Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon);
Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229913.peg.394 CDS CP016553.1 381945 381460 -3 - 486 Putative membrane protein - none -
fig|6666666.229913.peg.395 CDS CP016553.1 382553 381948 -2 - 606 Galactoside O-acetyltransferase (EC 2.3.1.18) Lactose utilization
fig|6666666.229913.peg.396 CDS CP016553.1 383155 382553 -1 - 603 Putative phosphatase YqaB 2-phosphoglycolate salvage
fig|6666666.229913.peg.397 CDS CP016553.1 383283 383663 3 + 381 FIG00782409: hypothetical protein - none -
fig|6666666.229913.peg.398 CDS CP016553.1 384065 384193 2 + 129 hypothetical protein - none -
fig|6666666.229913.peg.399 CDS CP016553.1 386194 384179 -1 - 2016 ATP-dependent DNA helicase Rep DNA repair, bacterial UvrD and related helicases
fig|6666666.229913.peg.400 CDS CP016553.1 386434 386204 -1 - 231 FIG00696102: hypothetical protein - none -
fig|6666666.229913.peg.401 CDS CP016553.1 387101 386538 -2 - 564 Outer membrane protein 18/16 - none -
fig|6666666.229913.peg.402 CDS CP016553.1 387317 390118 2 + 2802 DNA polymerase I (EC 2.7.7.7) DNA Repair Base Excision
fig|6666666.229913.peg.403 CDS CP016553.1 390624 393044 3 + 2421 Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-) Anaerobic respiratory reductases
fig|6666666.229913.peg.404 CDS CP016553.1 393055 393672 1 + 618 Anaerobic dimethyl sulfoxide reductase chain B (EC 1.8.99.-) Anaerobic respiratory reductases
fig|6666666.229913.peg.405 CDS CP016553.1 393674 394513 2 + 840 Anaerobic dimethyl sulfoxide reductase chain C (EC 1.8.99.-) Anaerobic respiratory reductases
fig|6666666.229913.peg.406 CDS CP016553.1 394547 395161 2 + 615 Putative oxidoreductase component of anaerobic dehydrogenases; Functional role page for Chaperone protein TorD - none -
fig|6666666.229913.peg.407 CDS CP016553.1 395175 395384 3 + 210 Ferredoxin-type protein NapF (periplasmic nitrate reductase) - none -
fig|6666666.229913.peg.408 CDS CP016553.1 395529 396434 3 + 906 Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14) Glycyl-tRNA synthetase;
Glycyl-tRNA synthetase containing cluster;
tRNA aminoacylation, Gly
fig|6666666.229913.peg.409 CDS CP016553.1 396484 396744 1 + 261 Glutaredoxin-related protein Glutaredoxins
fig|6666666.229913.peg.410 CDS CP016553.1 396784 397092 1 + 309 FIG074102: hypothetical protein - none -
fig|6666666.229913.peg.411 CDS CP016553.1 397214 397552 2 + 339 FIG074102: hypothetical protein - none -
fig|6666666.229913.peg.412 CDS CP016553.1 397689 397823 3 + 135 hypothetical protein - none -
fig|6666666.229913.peg.413 CDS CP016553.1 397871 399739 2 + 1869 ATPase family protein - none -
fig|6666666.229913.peg.414 CDS CP016553.1 399732 401843 3 + 2112 Glycyl-tRNA synthetase beta chain (EC 6.1.1.14) Glycyl-tRNA synthetase;
Glycyl-tRNA synthetase containing cluster;
tRNA aminoacylation, Gly
fig|6666666.229913.peg.415 CDS CP016553.1 403546 401912 -1 - 1635 CTP synthase (EC 6.3.4.2) CTP synthase (EC 6.3.4.2) cluster;
pyrimidine conversions
fig|6666666.229913.peg.416 CDS CP016553.1 403660 405075 1 + 1416 Branched-chain amino acid transport system carrier protein - none -
fig|6666666.229913.peg.417 CDS CP016553.1 405185 405385 2 + 201 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) / Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) Riboflavin synthesis cluster
fig|6666666.229913.peg.418 CDS CP016553.1 406156 405572 -1 - 585 NfuA Fe-S protein maturation Biotin biosynthesis Experimental;
DNA uptake cluster
fig|6666666.229913.peg.419 CDS CP016553.1 406954 406268 -1 - 687 Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy Biotin biosynthesis Experimental;
Biotin synthesis cluster;
CBSS-216591.1.peg.168
fig|6666666.229913.peg.420 CDS CP016553.1 407100 407912 3 + 813 HMP-PP hydrolase (pyridoxal phosphatase) Cof, detected in genetic screen for thiamin metabolic genes (PMID:15292217) - none -
fig|6666666.229913.peg.421 CDS CP016553.1 408096 409208 3 + 1113 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch;
Threonine and Homoserine Biosynthesis
fig|6666666.229913.peg.422 CDS CP016553.1 409863 409282 -3 - 582 Late competence protein ComEA, DNA receptor - none -
fig|6666666.229913.peg.423 CDS CP016553.1 410128 412698 1 + 2571 ClpB protein Protein chaperones;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229913.peg.424 CDS CP016553.1 412826 412677 -2 - 150 hypothetical protein - none -
fig|6666666.229913.peg.425 CDS CP016553.1 413299 412799 -1 - 501 hypothetical protein - none -
fig|6666666.229913.peg.426 CDS CP016553.1 413482 414510 1 + 1029 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) - none -
fig|6666666.229913.peg.427 CDS CP016553.1 414510 414689 3 + 180 hypothetical protein - none -
fig|6666666.229913.peg.428 CDS CP016553.1 414768 415592 3 + 825 Diaminopimelate epimerase (EC 5.1.1.7) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229913.peg.429 CDS CP016553.1 415602 416492 3 + 891 Tyrosine recombinase XerC - none -
fig|6666666.229913.peg.430 CDS CP016553.1 416507 417220 2 + 714 Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5@1-phosphoribitylamino)uracil phosphatase Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants
fig|6666666.229913.peg.431 CDS CP016553.1 417747 417322 -3 - 426 Excinuclease ATPase subunit - none -
fig|6666666.229913.peg.432 CDS CP016553.1 417775 418098 1 + 324 hypothetical protein - none -
fig|6666666.229913.peg.433 CDS CP016553.1 418128 418871 3 + 744 3-oxoacyl-[ACP] synthase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229913.peg.434 CDS CP016553.1 418856 419644 2 + 789 FIG018329: 1-acyl-sn-glycerol-3-phosphate acyltransferase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229913.peg.435 CDS CP016553.1 419622 419885 3 + 264 Acyl carrier protein (ACP1) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229913.peg.436 CDS CP016553.1 419888 420139 2 + 252 Acyl carrier protein (ACP2) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229913.peg.437 CDS CP016553.1 420139 421806 1 + 1668 FIGfam138462: Acyl-CoA synthetase, AMP-(fatty) acid ligase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229913.peg.438 CDS CP016553.1 421832 422377 2 + 546 FIG017861: hypothetical protein Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229913.peg.439 CDS CP016553.1 422374 423735 1 + 1362 FIGfam138462: Acyl-CoA synthetase, AMP-(fatty) acid ligase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229913.peg.440 CDS CP016553.1 423735 424457 3 + 723 FIG143263: Glycosyl transferase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229913.peg.441 CDS CP016553.1 424454 425380 2 + 927 Lysophospholipid acyltransferase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229913.peg.442 CDS CP016553.1 425377 425823 1 + 447 FIG002571: 4-hydroxybenzoyl-CoA thioesterase domain protein Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229913.peg.443 CDS CP016553.1 425820 426404 3 + 585 FIG027190: Putative transmembrane protein Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229913.peg.444 CDS CP016553.1 426411 428684 3 + 2274 FIG021862: membrane protein, exporter Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229913.peg.445 CDS CP016553.1 428814 429293 3 + 480 FIG085779: Lipoprotein Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229913.peg.446 CDS CP016553.1 429302 430525 2 + 1224 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) FabV like Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229913.peg.447 CDS CP016553.1 430518 430961 3 + 444 3-hydroxydecanoyl-[ACP] dehydratase (EC 4.2.1.60) Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229913.peg.448 CDS CP016553.1 431011 431739 1 + 729 3-oxoacyl-[ACP] reductase (EC 1.1.1.100) Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229913.peg.449 CDS CP016553.1 431770 433014 1 + 1245 FIG138576: 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229913.peg.450 CDS CP016553.1 433408 434820 1 + 1413 hypothetical protein - none -
fig|6666666.229913.peg.451 CDS CP016553.1 435049 437775 1 + 2727 hypothetical protein - none -
fig|6666666.229913.peg.452 CDS CP016553.1 437779 437928 1 + 150 hypothetical protein - none -
fig|6666666.229913.peg.453 CDS CP016553.1 438290 438616 2 + 327 VgrG-3 protein - none -
fig|6666666.229913.peg.454 CDS CP016553.1 438801 438643 -3 - 159 hypothetical protein - none -
fig|6666666.229913.peg.455 CDS CP016553.1 439246 440202 1 + 957 hypothetical protein - none -
fig|6666666.229913.peg.456 CDS CP016553.1 440154 442958 3 + 2805 hypothetical protein - none -
fig|6666666.229913.peg.457 CDS CP016553.1 442998 443828 3 + 831 hypothetical protein - none -
fig|6666666.229913.peg.458 CDS CP016553.1 443974 444096 1 + 123 hypothetical protein - none -
fig|6666666.229913.peg.459 CDS CP016553.1 444400 444951 1 + 552 hypothetical protein - none -
fig|6666666.229913.peg.460 CDS CP016553.1 445026 445145 3 + 120 hypothetical protein - none -
fig|6666666.229913.peg.461 CDS CP016553.1 445419 445225 -3 - 195 hypothetical protein - none -
fig|6666666.229913.peg.462 CDS CP016553.1 447673 447795 1 + 123 hypothetical protein - none -
fig|6666666.229913.peg.463 CDS CP016553.1 448364 449221 2 + 858 Methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5) / Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9) 5-FCL-like protein;
One-carbon metabolism by tetrahydropterines;
One-carbon metabolism by tetrahydropterines;
Serine-glyoxylate cycle;
Serine-glyoxylate cycle
fig|6666666.229913.peg.464 CDS CP016553.1 450944 449310 -2 - 1635 Heat shock protein 60 family chaperone GroEL GroEL GroES
fig|6666666.229913.peg.465 CDS CP016553.1 451354 451064 -1 - 291 Heat shock protein 60 family co-chaperone GroES GroEL GroES
fig|6666666.229913.peg.466 CDS CP016553.1 451923 451441 -3 - 483 FxsA protein - none -
fig|6666666.229913.peg.467 CDS CP016553.1 452153 453571 2 + 1419 Aspartate ammonia-lyase (EC 4.3.1.1) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229913.peg.468 CDS CP016553.1 453752 454789 2 + 1038 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) LOS core oligosaccharide biosynthesis
fig|6666666.229913.peg.469 CDS CP016553.1 456294 455458 -3 - 837 PTS system, mannose-specific IID component (EC 2.7.1.69) Mannose Metabolism;
Sialic Acid Metabolism
fig|6666666.229913.peg.470 CDS CP016553.1 457113 456310 -3 - 804 PTS system, mannose-specific IIC component (EC 2.7.1.69) Mannose Metabolism;
Sialic Acid Metabolism
fig|6666666.229913.peg.471 CDS CP016553.1 458123 457125 -2 - 999 PTS system, mannose-specific IIA component (EC 2.7.1.69) / PTS system, mannose-specific IIB component (EC 2.7.1.69) Mannose Metabolism;
Mannose Metabolism;
Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229913.peg.472 CDS CP016553.1 458408 459100 2 + 693 Permeases of the major facilitator superfamily - none -
fig|6666666.229913.peg.473 CDS CP016553.1 459058 459864 1 + 807 Permeases of the major facilitator superfamily - none -
fig|6666666.229913.peg.474 CDS CP016553.1 461063 459891 -2 - 1173 Xylose activator XylR (AraC family) Xylose utilization
fig|6666666.229913.peg.475 CDS CP016553.1 461052 461174 3 + 123 hypothetical protein - none -
fig|6666666.229913.peg.476 CDS CP016553.1 462524 461178 -2 - 1347 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229913.peg.477 CDS CP016553.1 463407 462577 -3 - 831 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229913.peg.478 CDS CP016553.1 463765 463574 -1 - 192 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229913.peg.479 CDS CP016553.1 464807 463854 -2 - 954 Xylose ABC transporter, permease protein XylH Xylose utilization
fig|6666666.229913.peg.480 CDS CP016553.1 464982 464785 -3 - 198 Xylose ABC transporter, permease protein XylH Xylose utilization
fig|6666666.229913.peg.481 CDS CP016553.1 466482 464986 -3 - 1497 D-xylose transport ATP-binding protein XylG Xylose utilization
fig|6666666.229913.peg.482 CDS CP016553.1 467555 466557 -2 - 999 Xylose ABC transporter, periplasmic xylose-binding protein XylF Xylose utilization
fig|6666666.229913.peg.483 CDS CP016553.1 467813 469132 2 + 1320 Xylose isomerase (EC 5.3.1.5) Xylose utilization
fig|6666666.229913.peg.484 CDS CP016553.1 469182 470543 3 + 1362 Xylulose kinase (EC 2.7.1.17) Xylose utilization
fig|6666666.229913.peg.485 CDS CP016553.1 471228 471509 3 + 282 VgrG-3 protein - none -
fig|6666666.229913.peg.486 CDS CP016553.1 472205 472732 2 + 528 DNA transformation protein TfoX CBSS-83333.1.peg.946;
Orphan regulatory proteins
fig|6666666.229913.peg.487 CDS CP016553.1 473647 472799 -1 - 849 RNA polymerase sigma factor RpoH Heat shock dnaK gene cluster extended;
Transcription initiation, bacterial sigma factors
fig|6666666.229913.peg.488 CDS CP016553.1 474146 473832 -2 - 315 Uncharacterized protein conserved in bacteria - none -
fig|6666666.229913.peg.489 CDS CP016553.1 475187 474162 -2 - 1026 UDP-N-acetylenolpyruvoylglucosamine reductase (EC 1.1.1.158) Peptidoglycan Biosynthesis;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229913.peg.490 CDS CP016553.1 476905 475202 -1 - 1704 Nitrate/nitrite sensor protein (EC 2.7.3.-) - none -
fig|6666666.229913.peg.491 CDS CP016553.1 476951 477115 2 + 165 hypothetical protein - none -
fig|6666666.229913.peg.492 CDS CP016553.1 477181 477465 1 + 285 Periplasmic nitrate reductase component NapD - none -
fig|6666666.229913.peg.493 CDS CP016553.1 477499 479985 1 + 2487 Periplasmic nitrate reductase precursor (EC 1.7.99.4) - none -
fig|6666666.229913.peg.494 CDS CP016553.1 480033 480872 3 + 840 Ferredoxin-type protein NapG (periplasmic nitrate reductase) - none -
fig|6666666.229913.peg.495 CDS CP016553.1 480872 481753 2 + 882 Polyferredoxin NapH (periplasmic nitrate reductase) - none -
fig|6666666.229913.peg.496 CDS CP016553.1 481790 482239 2 + 450 Nitrate reductase cytochrome c550-type subunit - none -
fig|6666666.229913.peg.497 CDS CP016553.1 482253 482888 3 + 636 Cytochrome c-type protein NapC - none -
fig|6666666.229913.peg.498 CDS CP016553.1 484877 482982 -2 - 1896 Glutathionylspermidine synthase (EC 6.3.1.8) / Glutathionylspermidine amidohydrolase (EC 3.5.1.78) Glutathionylspermidine and Trypanothione;
Glutathionylspermidine and Trypanothione
fig|6666666.229913.peg.499 CDS CP016553.1 486038 484995 -2 - 1044 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) LOS core oligosaccharide biosynthesis
fig|6666666.229913.peg.500 CDS CP016553.1 487185 486058 -3 - 1128 Fic family protein - none -
fig|6666666.229913.peg.501 CDS CP016553.1 488281 487355 -1 - 927 ADP-L-glycero-D-manno-heptose-6-epimerase (EC 5.1.3.20) LOS core oligosaccharide biosynthesis
fig|6666666.229913.peg.502 CDS CP016553.1 488303 488422 2 + 120 hypothetical protein - none -
fig|6666666.229913.peg.503 CDS CP016553.1 488560 489336 1 + 777 Protein HI0205 precursor - none -
fig|6666666.229913.peg.504 CDS CP016553.1 489363 491177 3 + 1815 5@1-nucleotidase (EC 3.1.3.5); NAD pyrophosphatase, periplasmic (EC 3.6.1.22) Purine conversions;
pyrimidine conversions
fig|6666666.229913.peg.505 CDS CP016553.1 492433 491564 -1 - 870 hypothetical protein - none -
fig|6666666.229913.peg.506 CDS CP016553.1 495051 492760 -3 - 2292 hypothetical protein - none -
fig|6666666.229913.peg.507 CDS CP016553.1 495665 495033 -2 - 633 hypothetical protein - none -
fig|6666666.229913.peg.508 CDS CP016553.1 497070 495676 -3 - 1395 hypothetical protein - none -
fig|6666666.229913.peg.509 CDS CP016553.1 499038 497233 -3 - 1806 VgrG-3 protein - none -
fig|6666666.229913.peg.510 CDS CP016553.1 499626 499468 -3 - 159 hypothetical protein - none -
fig|6666666.229913.peg.511 CDS CP016553.1 501757 499667 -1 - 2091 hypothetical protein - none -
fig|6666666.229913.peg.512 CDS CP016553.1 502060 501857 -1 - 204 hypothetical protein - none -
fig|6666666.229913.peg.513 CDS CP016553.1 502761 502234 -3 - 528 hypothetical protein - none -
fig|6666666.229913.peg.514 CDS CP016553.1 503437 502724 -1 - 714 hypothetical protein - none -
fig|6666666.229913.peg.515 CDS CP016553.1 503743 504414 1 + 672 Deoxyribose-phosphate aldolase (EC 4.1.2.4) Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.229913.peg.516 CDS CP016553.1 504442 505191 1 + 750 Deoxyribose operon repressor, DeoR family Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.229913.peg.517 CDS CP016553.1 505329 506420 3 + 1092 Putative exported protein precursor - none -
fig|6666666.229913.peg.518 CDS CP016553.1 507922 506552 -1 - 1371 N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23) / Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157) Peptidoglycan Biosynthesis;
Peptidoglycan Biosynthesis;
Sialic Acid Metabolism;
Sialic Acid Metabolism;
Transcription repair cluster;
Transcription repair cluster;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229913.peg.519 CDS CP016553.1 508008 509138 3 + 1131 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) Recycling of Peptidoglycan Amino Sugars
fig|6666666.229913.peg.520 CDS CP016553.1 509135 510049 2 + 915 N-acetylmuramic acid 6-phosphate etherase - none -
fig|6666666.229913.peg.521 CDS CP016553.1 510214 511260 1 + 1047 ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1) Polyamine Metabolism
fig|6666666.229913.peg.522 CDS CP016553.1 511749 511321 -3 - 429 ATP synthase epsilon chain (EC 3.6.3.14) - none -
fig|6666666.229913.peg.523 CDS CP016553.1 513164 511791 -2 - 1374 ATP synthase beta chain (EC 3.6.3.14) - none -
fig|6666666.229913.peg.524 CDS CP016553.1 514050 513181 -3 - 870 ATP synthase gamma chain (EC 3.6.3.14) - none -
fig|6666666.229913.peg.525 CDS CP016553.1 515607 514066 -3 - 1542 ATP synthase alpha chain (EC 3.6.3.14) - none -
fig|6666666.229913.peg.526 CDS CP016553.1 516168 515620 -3 - 549 ATP synthase delta chain (EC 3.6.3.14) - none -
fig|6666666.229913.peg.527 CDS CP016553.1 516652 516182 -1 - 471 ATP synthase F0 sector subunit b - none -
fig|6666666.229913.peg.528 CDS CP016553.1 516956 516702 -2 - 255 ATP synthase F0 sector subunit c (EC 3.6.3.14) - none -
fig|6666666.229913.peg.529 CDS CP016553.1 517796 517008 -2 - 789 ATP synthase F0 sector subunit a - none -
fig|6666666.229913.peg.530 CDS CP016553.1 518198 517821 -2 - 378 FIG048548: ATP synthase protein I2 - none -
fig|6666666.229913.peg.531 CDS CP016553.1 518993 518310 -2 - 684 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB Cell Division Subsystem including YidCD;
RNA methylation;
RNA modification and chromosome partitioning cluster
fig|6666666.229913.peg.532 CDS CP016553.1 519348 518986 -3 - 363 Redox-sensing transcriptional regulator QorR NADPH:quinone oxidoreductase 2
fig|6666666.229913.peg.533 CDS CP016553.1 519500 519670 2 + 171 NADPH:quinone oxidoreductase 2 NADPH:quinone oxidoreductase 2
fig|6666666.229913.peg.534 CDS CP016553.1 519655 520356 1 + 702 NADPH:quinone oxidoreductase 2 NADPH:quinone oxidoreductase 2
fig|6666666.229913.peg.535 CDS CP016553.1 520510 520626 1 + 117 hypothetical protein - none -
fig|6666666.229913.peg.536 CDS CP016553.1 522517 520628 -1 - 1890 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA Cell Division Subsystem including YidCD;
RNA modification and chromosome partitioning cluster;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229913.peg.537 CDS CP016553.1 523389 522946 -3 - 444 Flavoprotein MioC Flavodoxin
fig|6666666.229913.peg.538 CDS CP016553.1 523664 523446 -2 - 219 FIG074102: hypothetical protein - none -
fig|6666666.229913.peg.539 CDS CP016553.1 523860 524873 3 + 1014 Fructose-1,6-bisphosphatase, GlpX type (EC 3.1.3.11) Glycolysis and Gluconeogenesis
fig|6666666.229913.peg.540 CDS CP016553.1 525315 524911 -3 - 405 hypothetical protein - none -
fig|6666666.229913.peg.541 CDS CP016553.1 525336 525467 3 + 132 hypothetical protein - none -
fig|6666666.229913.peg.542 CDS CP016553.1 526312 525515 -1 - 798 Serine acetyltransferase (EC 2.3.1.30) Cysteine Biosynthesis;
Methionine Biosynthesis
fig|6666666.229913.peg.543 CDS CP016553.1 527328 526315 -3 - 1014 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) Glutaredoxin 3 containing cluster;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229913.peg.544 CDS CP016553.1 527918 527406 -2 - 513 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) Glutaredoxin 3 containing cluster
fig|6666666.229913.peg.545 CDS CP016553.1 528440 527934 -2 - 507 FIG136845: Rhodanese-related sulfurtransferase Glutaredoxin 3 containing cluster
fig|6666666.229913.peg.546 CDS CP016553.1 528701 530023 2 + 1323 Anaerobic C4-dicarboxylate membrane transporter DcuA - none -
fig|6666666.229913.peg.547 CDS CP016553.1 530193 531941 3 + 1749 Transport ATP-binding protein CydD Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229913.peg.548 CDS CP016553.1 531958 533592 1 + 1635 ABC transporter ATP-binding protein - none -
fig|6666666.229913.peg.549 CDS CP016553.1 534323 533703 -2 - 621 Unsaturated fatty acid biosythesis repressor FabR, TetR family - none -
fig|6666666.229913.peg.550 CDS CP016553.1 535234 534335 -1 - 900 Hydrogen peroxide-inducible genes activator LysR-family proteins in Escherichia coli;
LysR-family proteins in Salmonella enterica Typhimurium;
Oxidative stress;
Thioredoxin-disulfide reductase
fig|6666666.229913.peg.551 CDS CP016553.1 535393 536121 1 + 729 Peroxiredoxin family protein/glutaredoxin - none -
fig|6666666.229913.peg.552 CDS CP016553.1 536397 536182 -3 - 216 Protein SlyX - none -
fig|6666666.229913.peg.553 CDS CP016553.1 536492 537217 2 + 726 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase;
Potassium homeostasis
fig|6666666.229913.peg.554 CDS CP016553.1 537297 537965 3 + 669 YheO-like PAS domain - none -
fig|6666666.229913.peg.555 CDS CP016553.1 537969 538346 3 + 378 tRNA 5-methylaminomethyl-2-thiouridine synthase TusD CBSS-326442.4.peg.1852;
Sulfite reduction-associated complex DsrMKJOP and co-clustering genes;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.229913.peg.556 CDS CP016553.1 538343 538705 2 + 363 tRNA 5-methylaminomethyl-2-thiouridine synthase TusC CBSS-326442.4.peg.1852;
Sulfite reduction-associated complex DsrMKJOP and co-clustering genes;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.229913.peg.557 CDS CP016553.1 538705 538995 1 + 291 tRNA 5-methylaminomethyl-2-thiouridine synthase TusB Sulfite reduction-associated complex DsrMKJOP and co-clustering genes;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.229913.peg.558 CDS CP016553.1 539767 539000 -1 - 768 ABC-type polar amino acid transport system, ATPase component CBSS-326442.4.peg.1852
fig|6666666.229913.peg.559 CDS CP016553.1 540499 539777 -1 - 723 L-Cystine ABC transporter, permease protein TcyB - none -
fig|6666666.229913.peg.560 CDS CP016553.1 541262 540483 -2 - 780 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain - none -
fig|6666666.229913.peg.561 CDS CP016553.1 542683 541388 -1 - 1296 Glycine/D-amino acid oxidases (deaminating) - none -
fig|6666666.229913.peg.562 CDS CP016553.1 542774 542652 -2 - 123 hypothetical protein - none -
fig|6666666.229913.peg.563 CDS CP016553.1 544173 542809 -3 - 1365 lipoprotein, putative - none -
fig|6666666.229913.peg.564 CDS CP016553.1 544342 544220 -1 - 123 hypothetical protein - none -
fig|6666666.229913.peg.565 CDS CP016553.1 544536 544754 3 + 219 hypothetical protein - none -
fig|6666666.229913.peg.566 CDS CP016553.1 545925 544963 -3 - 963 Lipoate synthase Lipoic acid metabolism;
Lipoic acid synthesis cluster
fig|6666666.229913.peg.567 CDS CP016553.1 546628 545990 -1 - 639 Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase Lipoic acid metabolism;
Lipoic acid synthesis cluster
fig|6666666.229913.peg.568 CDS CP016553.1 546973 546674 -1 - 300 Proposed lipoate regulatory protein YbeD Lipoic acid metabolism;
Lipoic acid synthesis cluster
fig|6666666.229913.peg.569 CDS CP016553.1 548236 547046 -1 - 1191 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) Metallocarboxypeptidases (EC 3.4.17.-);
Murein Hydrolases;
Peptidoglycan Biosynthesis
fig|6666666.229913.peg.570 CDS CP016553.1 549124 548267 -1 - 858 Rare lipoprotein A precursor Peptidoglycan Biosynthesis
fig|6666666.229913.peg.571 CDS CP016553.1 550294 549173 -1 - 1122 Rod shape-determining protein RodA Bacterial Cytoskeleton;
Peptidoglycan Biosynthesis
fig|6666666.229913.peg.572 CDS CP016553.1 552242 550281 -2 - 1962 Penicillin-binding protein 2 (PBP-2) 16S rRNA modification within P site of ribosome;
CBSS-83331.1.peg.3039;
Peptidoglycan Biosynthesis
fig|6666666.229913.peg.573 CDS CP016553.1 552791 552255 -2 - 537 LSU m3Psi1915 methyltransferase RlmH RNA methylation;
Ribosome biogenesis bacterial;
tRNA modification Bacteria
fig|6666666.229913.peg.574 CDS CP016553.1 553090 552782 -1 - 309 Iojap protein - none -
fig|6666666.229913.peg.575 CDS CP016553.1 554413 553157 -1 - 1257 ATP-dependent RNA helicase RhlB - none -
fig|6666666.229913.peg.576 CDS CP016553.1 554738 555976 2 + 1239 Transcription termination factor Rho Transcription factors bacterial
fig|6666666.229913.peg.577 CDS CP016553.1 557336 556101 -2 - 1236 Major facilitator superfamily (MFS) transport protein - none -
fig|6666666.229913.peg.578 CDS CP016553.1 557416 557556 1 + 141 hypothetical protein - none -
fig|6666666.229913.peg.579 CDS CP016553.1 557795 557565 -2 - 231 Acyl carrier protein Fatty Acid Biosynthesis FASII;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229913.peg.580 CDS CP016553.1 558796 558068 -1 - 729 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) Fatty Acid Biosynthesis FASII
fig|6666666.229913.peg.581 CDS CP016553.1 559759 558821 -1 - 939 Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39) Fatty Acid Biosynthesis FASII
fig|6666666.229913.peg.582 CDS CP016553.1 560816 559866 -2 - 951 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) Fatty Acid Biosynthesis FASII
fig|6666666.229913.peg.583 CDS CP016553.1 561882 560863 -3 - 1020 Phosphate:acyl-ACP acyltransferase PlsX Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229913.peg.584 CDS CP016553.1 562079 561909 -2 - 171 LSU ribosomal protein L32p - none -
fig|6666666.229913.peg.585 CDS CP016553.1 562620 562096 -3 - 525 COG1399 protein, clustered with ribosomal protein L32p - none -
fig|6666666.229913.peg.586 CDS CP016553.1 563333 562692 -2 - 642 Dethiobiotin synthetase (EC 6.3.3.3) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229913.peg.587 CDS CP016553.1 564073 563333 -1 - 741 Biotin synthesis protein BioC Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229913.peg.588 CDS CP016553.1 564741 564091 -3 - 651 Biotin synthesis protein BioG Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229913.peg.589 CDS CP016553.1 565897 564722 -1 - 1176 8-amino-7-oxononanoate synthase (EC 2.3.1.47) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229913.peg.590 CDS CP016553.1 567179 565890 -2 - 1290 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229913.peg.591 CDS CP016553.1 567402 568271 3 + 870 Phosphatidylserine decarboxylase (EC 4.1.1.65) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229913.peg.592 CDS CP016553.1 568297 568929 1 + 633 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase
fig|6666666.229913.peg.593 CDS CP016553.1 569653 568994 -1 - 660 Glutamate 5-kinase (EC 2.7.2.11) Proline Synthesis
fig|6666666.229913.peg.594 CDS CP016553.1 569813 569634 -2 - 180 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA Proline Synthesis;
Proline Synthesis
fig|6666666.229913.peg.595 CDS CP016553.1 569964 570749 3 + 786 FIG023911: putative membrane protein CBSS-316275.9.peg.382
fig|6666666.229913.peg.596 CDS CP016553.1 570751 571215 1 + 465 FIG001826: putative inner membrane protein CBSS-316275.9.peg.382
fig|6666666.229913.peg.597 CDS CP016553.1 571255 571740 1 + 486 Dihydrofolate reductase (EC 1.5.1.3) 5-FCL-like protein;
Folate Biosynthesis
fig|6666666.229913.peg.598 CDS CP016553.1 572221 572090 -1 - 132 hypothetical protein - none -
fig|6666666.229913.peg.599 CDS CP016553.1 573588 572533 -3 - 1056 probable lipoprotein - none -
fig|6666666.229913.peg.600 CDS CP016553.1 574751 573684 -2 - 1068 Probable phospholipase protein - none -
fig|6666666.229913.peg.601 CDS CP016553.1 575887 574748 -1 - 1140 Probable phospholipase protein - none -
fig|6666666.229913.peg.602 CDS CP016553.1 578116 575891 -1 - 2226 VgrG-3 protein - none -
fig|6666666.229913.peg.603 CDS CP016553.1 578283 578113 -3 - 171 hypothetical protein - none -
fig|6666666.229913.peg.604 CDS CP016553.1 578491 578625 1 + 135 hypothetical protein - none -
fig|6666666.229913.peg.605 CDS CP016553.1 578814 579800 3 + 987 Fructose repressor FruR, LacI family Fructose utilization
fig|6666666.229913.peg.606 CDS CP016553.1 580497 579784 -3 - 714 SanA protein - none -
fig|6666666.229913.peg.607 CDS CP016553.1 580690 581793 1 + 1104 Homoserine O-acetyltransferase (EC 2.3.1.31) Methionine Biosynthesis
fig|6666666.229913.peg.608 CDS CP016553.1 582099 583097 3 + 999 Purine nucleotide synthesis repressor Purine nucleotide synthesis regulator
fig|6666666.229913.peg.609 CDS CP016553.1 583399 583533 1 + 135 hypothetical protein - none -
fig|6666666.229913.peg.610 CDS CP016553.1 583566 583886 3 + 321 putative cytoplasmic protein - none -
fig|6666666.229913.peg.611 CDS CP016553.1 584828 584001 -2 - 828 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229913.peg.612 CDS CP016553.1 585883 584912 -1 - 972 Cys regulon transcriptional activator CysB Cysteine Biosynthesis;
LysR-family proteins in Escherichia coli
fig|6666666.229913.peg.613 CDS CP016553.1 586882 585914 -1 - 969 Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70) RNA pseudouridine syntheses
fig|6666666.229913.peg.614 CDS CP016553.1 587560 586937 -1 - 624 Hypothetical YciO protein, TsaC/YrdC paralog YrdC-YciO-Sua5 protein family
fig|6666666.229913.peg.615 CDS CP016553.1 588765 587641 -3 - 1125 Chorismate mutase I (EC 5.4.99.5) / Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) Chorismate Synthesis;
Chorismate Synthesis;
Phenylalanine and Tyrosine Branches from Chorismate;
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229913.peg.616 CDS CP016553.1 590686 588806 -1 - 1881 Signal peptide peptidase SppA (EC 3.4.21.-) - none -
fig|6666666.229913.peg.617 CDS CP016553.1 590810 591364 2 + 555 FIG002003: Protein YdjA - none -
fig|6666666.229913.peg.618 CDS CP016553.1 591589 591708 1 + 120 hypothetical protein - none -
fig|6666666.229913.peg.619 CDS CP016553.1 593275 591794 -1 - 1482 Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4) 5-FCL-like protein;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate;
TCA Cycle;
TCA Cycle
fig|6666666.229913.peg.620 CDS CP016553.1 594982 593312 -1 - 1671 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) 5-FCL-like protein;
Dehydrogenase complexes;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229913.peg.621 CDS CP016553.1 597668 595011 -2 - 2658 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) 5-FCL-like protein;
Dehydrogenase complexes;
Methionine Degradation;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229913.peg.622 CDS CP016553.1 598047 598922 3 + 876 Tellurite resistance protein TehB Tellurite resistance: Chromosomal determinants
fig|6666666.229913.peg.623 CDS CP016553.1 601789 599075 -1 - 2715 Transcriptional activator of maltose regulon, MalT Maltose and Maltodextrin Utilization;
Maltose utilization cluster
fig|6666666.229913.peg.624 CDS CP016553.1 601958 604348 2 + 2391 Maltodextrin phosphorylase (EC 2.4.1.1) Glycogen metabolism;
Maltose and Maltodextrin Utilization;
Maltose utilization cluster
fig|6666666.229913.peg.625 CDS CP016553.1 604451 606526 2 + 2076 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) Glycogen metabolism;
Glycogen metabolism cluster;
Maltose and Maltodextrin Utilization;
Maltose utilization cluster
fig|6666666.229913.peg.626 CDS CP016553.1 606548 606673 2 + 126 hypothetical protein - none -
fig|6666666.229913.peg.627 CDS CP016553.1 607212 606670 -3 - 543 Colicin V production protein - none -
fig|6666666.229913.peg.628 CDS CP016553.1 607834 607391 -1 - 444 FIG00638298: membrane protein YfbV - none -
fig|6666666.229913.peg.629 CDS CP016553.1 608102 609304 2 + 1203 Acetate kinase (EC 2.7.2.1) Fermentations: Lactate;
Fermentations: Mixed acid;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229913.peg.630 CDS CP016553.1 609374 611509 2 + 2136 Phosphate acetyltransferase (EC 2.3.1.8) Fermentations: Lactate;
Fermentations: Mixed acid;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229913.peg.631 CDS CP016553.1 611856 612218 3 + 363 hypothetical protein - none -
fig|6666666.229913.peg.632 CDS CP016553.1 612789 612289 -3 - 501 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) Folate Biosynthesis;
Folate biosynthesis cluster
fig|6666666.229913.peg.633 CDS CP016553.1 614248 612782 -1 - 1467 Poly(A) polymerase (EC 2.7.7.19) Polyadenylation bacterial
fig|6666666.229913.peg.634 CDS CP016553.1 614802 614365 -3 - 438 C4-type zinc finger protein, DksA/TraR family - none -
fig|6666666.229913.peg.635 CDS CP016553.1 615295 617529 1 + 2235 DNA internalization-related competence protein ComEC/Rec2 KDO2-Lipid A biosynthesis;
KDO2-Lipid A biosynthesis cluster 2
fig|6666666.229913.peg.636 CDS CP016553.1 617576 619324 2 + 1749 Lipid A export ATP-binding/permease protein MsbA (EC 3.6.3.25) KDO2-Lipid A biosynthesis;
KDO2-Lipid A biosynthesis cluster 2
fig|6666666.229913.peg.637 CDS CP016553.1 619343 620317 2 + 975 Tetraacyldisaccharide 4@1-kinase (EC 2.7.1.130) KDO2-Lipid A biosynthesis;
KDO2-Lipid A biosynthesis cluster 2
fig|6666666.229913.peg.638 CDS CP016553.1 620339 620518 2 + 180 FIG002473: Protein YcaR in KDO2-Lipid A biosynthesis cluster Broadly distributed proteins not in subsystems;
KDO2-Lipid A biosynthesis cluster 2
fig|6666666.229913.peg.639 CDS CP016553.1 620520 621293 3 + 774 3-deoxy-manno-octulosonate cytidylyltransferase (EC 2.7.7.38) KDO2-Lipid A biosynthesis;
KDO2-Lipid A biosynthesis cluster 2
fig|6666666.229913.peg.640 CDS CP016553.1 621422 623251 2 + 1830 Excinuclease ABC subunit C DNA repair, UvrABC system
fig|6666666.229913.peg.641 CDS CP016553.1 624729 623638 -3 - 1092 Possible ABC transporter, periplasmic substrate X binding protein precursor ABC transporter of unknown substrate X
fig|6666666.229913.peg.642 CDS CP016553.1 625600 624749 -1 - 852 Putative ABC transporter of substrate X, permease subunit II ABC transporter of unknown substrate X
fig|6666666.229913.peg.643 CDS CP016553.1 626466 625597 -3 - 870 Putative ABC transporter of substrate X, permease subunit I ABC transporter of unknown substrate X
fig|6666666.229913.peg.644 CDS CP016553.1 627533 626463 -2 - 1071 Putative ABC transporter of substrate X, ATP-binding subunit ABC transporter of unknown substrate X
fig|6666666.229913.peg.645 CDS CP016553.1 628840 627761 -1 - 1080 Selenide,water dikinase (EC 2.7.9.3) Selenocysteine metabolism;
tRNA modification Bacteria
fig|6666666.229913.peg.646 CDS CP016553.1 630230 629382 -2 - 849 filamentation induced by cAMP protein Fic-like protein - none -
fig|6666666.229913.peg.647 CDS CP016553.1 630739 630858 1 + 120 hypothetical protein - none -
fig|6666666.229913.peg.648 CDS CP016553.1 631071 630829 -3 - 243 DNA-damage-inducible protein d - none -
fig|6666666.229913.peg.649 CDS CP016553.1 632676 631252 -3 - 1425 NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) Phosphate metabolism
fig|6666666.229913.peg.650 CDS CP016553.1 634222 632687 -1 - 1536 NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2) Phosphate metabolism
fig|6666666.229913.peg.651 CDS CP016553.1 634515 635240 3 + 726 Sugar/maltose fermentation stimulation protein homolog Fermentations: Mixed acid
fig|6666666.229913.peg.652 CDS CP016553.1 635488 636675 1 + 1188 Tyrosyl-tRNA synthetase (EC 6.1.1.1) tRNA aminoacylation, Tyr
fig|6666666.229913.peg.653 CDS CP016553.1 636802 637413 1 + 612 hypothetical protein - none -
fig|6666666.229913.peg.654 CDS CP016553.1 637512 637658 3 + 147 hypothetical protein - none -
fig|6666666.229913.peg.655 CDS CP016553.1 638620 637700 -1 - 921 tRNA pseudouridine synthase B (EC 4.2.1.70) CBSS-138119.3.peg.2719;
RNA pseudouridine syntheses;
Riboflavin, FMN and FAD metabolism in plants;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229913.peg.656 CDS CP016553.1 639006 638620 -3 - 387 Ribosome-binding factor A CBSS-138119.3.peg.2719;
NusA-TFII Cluster;
Translation initiation factors bacterial
fig|6666666.229913.peg.657 CDS CP016553.1 642030 639538 -3 - 2493 Translation initiation factor 2 CBSS-138119.3.peg.2719;
NusA-TFII Cluster;
Translation initiation factors bacterial;
Universal GTPases
fig|6666666.229913.peg.658 CDS CP016553.1 643542 642046 -3 - 1497 Transcription termination protein NusA NusA-TFII Cluster;
Transcription factors bacterial
fig|6666666.229913.peg.659 CDS CP016553.1 644025 643570 -3 - 456 FIG000325: clustered with transcription termination protein NusA NusA-TFII Cluster;
Transcription factors bacterial
fig|6666666.229913.peg.660 CDS CP016553.1 644754 644936 3 + 183 hypothetical protein - none -
fig|6666666.229913.peg.662 CDS CP016553.1 652929 652417 -3 - 513 Protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-) Heme and Siroheme Biosynthesis;
Transport system clustering with HemG
fig|6666666.229913.peg.663 CDS CP016553.1 654392 652929 -2 - 1464 Potassium uptake protein TrkH Hyperosmotic potassium uptake;
Potassium homeostasis;
Potassium homeostasis;
Transport system clustering with HemG
fig|6666666.229913.peg.664 CDS CP016553.1 654626 654411 -2 - 216 FIG000605: protein co-occurring with transport systems (COG1739) Transport system clustering with HemG
fig|6666666.229913.peg.665 CDS CP016553.1 654776 654657 -2 - 120 FIG000605: protein co-occurring with transport systems (COG1739) Transport system clustering with HemG
fig|6666666.229913.peg.666 CDS CP016553.1 654925 654770 -1 - 156 FIG000605: protein co-occurring with transport systems (COG1739) Transport system clustering with HemG
fig|6666666.229913.peg.667 CDS CP016553.1 655050 654922 -3 - 129 hypothetical protein - none -
fig|6666666.229913.peg.668 CDS CP016553.1 655127 655252 2 + 126 tRNA 5-methylaminomethyl-2-thiouridine synthase TusA mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.229913.peg.669 CDS CP016553.1 655281 655529 3 + 249 FIG01200701: hypothetical protein - none -
fig|6666666.229913.peg.670 CDS CP016553.1 655580 656851 2 + 1272 Nicotinamide-nucleotide adenylyltransferase, NadR family (EC 2.7.7.1) / Ribosylnicotinamide kinase (EC 2.7.1.22) NAD and NADP cofactor biosynthesis global;
NAD and NADP cofactor biosynthesis global
fig|6666666.229913.peg.671 CDS CP016553.1 656867 657550 2 + 684 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases - none -
fig|6666666.229913.peg.672 CDS CP016553.1 657557 657670 2 + 114 hypothetical protein - none -
fig|6666666.229913.peg.673 CDS CP016553.1 657680 658900 2 + 1221 Tyrosine-specific transport protein - none -
fig|6666666.229913.peg.674 CDS CP016553.1 659585 659196 -2 - 390 LSU ribosomal protein L17p - none -
fig|6666666.229913.peg.675 CDS CP016553.1 660616 659627 -1 - 990 DNA-directed RNA polymerase alpha subunit (EC 2.7.7.6) RNA polymerase bacterial
fig|6666666.229913.peg.676 CDS CP016553.1 661265 660645 -2 - 621 SSU ribosomal protein S4p (S9e) Ribosome SSU bacterial
fig|6666666.229913.peg.677 CDS CP016553.1 661684 661295 -1 - 390 SSU ribosomal protein S11p (S14e) Ribosome SSU bacterial
fig|6666666.229913.peg.678 CDS CP016553.1 662056 661700 -1 - 357 SSU ribosomal protein S13p (S18e) Ribosome SSU bacterial
fig|6666666.229913.peg.679 CDS CP016553.1 662307 662194 -3 - 114 LSU ribosomal protein L36p - none -
fig|6666666.229913.peg.680 CDS CP016553.1 663659 662334 -2 - 1326 Preprotein translocase secY subunit (TC 3.A.5.1.1) - none -
fig|6666666.229913.peg.681 CDS CP016553.1 664097 663663 -2 - 435 LSU ribosomal protein L15p (L27Ae) - none -
fig|6666666.229913.peg.682 CDS CP016553.1 664787 664287 -2 - 501 SSU ribosomal protein S5p (S2e) Ribosome SSU bacterial
fig|6666666.229913.peg.683 CDS CP016553.1 665081 664803 -2 - 279 LSU ribosomal protein L18p (L5e) - none -
fig|6666666.229913.peg.684 CDS CP016553.1 665703 665170 -3 - 534 LSU ribosomal protein L6p (L9e) - none -
fig|6666666.229913.peg.685 CDS CP016553.1 666111 665719 -3 - 393 SSU ribosomal protein S8p (S15Ae) Ribosome SSU bacterial
fig|6666666.229913.peg.686 CDS CP016553.1 666453 666148 -3 - 306 SSU ribosomal protein S14p (S29e) @ SSU ribosomal protein S14p (S29e), zinc-independent Ribosome SSU bacterial;
Ribosome SSU bacterial
fig|6666666.229913.peg.687 CDS CP016553.1 666894 666466 -3 - 429 LSU ribosomal protein L5p (L11e) - none -
fig|6666666.229913.peg.688 CDS CP016553.1 667334 667023 -2 - 312 LSU ribosomal protein L24p (L26e) - none -
fig|6666666.229913.peg.689 CDS CP016553.1 668043 668327 3 + 285 Mobile element protein - none -
fig|6666666.229913.peg.690 CDS CP016553.1 669353 668331 -2 - 1023 Porphobilinogen synthase (EC 4.2.1.24) Heme and Siroheme Biosynthesis
fig|6666666.229913.peg.691 CDS CP016553.1 670138 669374 -1 - 765 Twin-arginine translocation protein TatC Cluster-based Subsystem Grouping Hypotheticals - perhaps Proteosome Related;
Twin-arginine translocation system
fig|6666666.229913.peg.692 CDS CP016553.1 670838 670176 -2 - 663 Twin-arginine translocation protein TatB Twin-arginine translocation system
fig|6666666.229913.peg.693 CDS CP016553.1 671066 670842 -2 - 225 Twin-arginine translocation protein TatA Cluster-based Subsystem Grouping Hypotheticals - perhaps Proteosome Related;
Twin-arginine translocation system
fig|6666666.229913.peg.694 CDS CP016553.1 671344 671213 -1 - 132 hypothetical protein - none -
fig|6666666.229913.peg.695 CDS CP016553.1 671790 671614 -3 - 177 hypothetical protein - none -
fig|6666666.229913.peg.696 CDS CP016553.1 672809 671799 -2 - 1011 hypothetical protein - none -
fig|6666666.229913.peg.697 CDS CP016553.1 674962 672812 -1 - 2151 hypothetical protein - none -
fig|6666666.229913.peg.698 CDS CP016553.1 675773 674955 -2 - 819 hypothetical protein - none -
fig|6666666.229913.peg.699 CDS CP016553.1 676291 676112 -1 - 180 hypothetical protein - none -
fig|6666666.229913.peg.700 CDS CP016553.1 677146 676460 -1 - 687 Leader peptidase (Prepilin peptidase) (EC 3.4.23.43) / N-methyltransferase (EC 2.1.1.-) Type IV pilus;
Type IV pilus
fig|6666666.229913.peg.701 CDS CP016553.1 678369 677146 -3 - 1224 Type II secretory pathway, component PulF / Type IV fimbrial assembly protein PilC Type IV pilus
fig|6666666.229913.peg.702 CDS CP016553.1 679771 678362 -1 - 1410 Type IV fimbrial assembly, ATPase PilB Type IV pilus
fig|6666666.229913.peg.703 CDS CP016553.1 680319 679798 -3 - 522 Type IV pilin PilA Type IV pilus
fig|6666666.229913.peg.704 CDS CP016553.1 680372 680926 2 + 555 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD Recycling of Peptidoglycan Amino Acids
fig|6666666.229913.peg.705 CDS CP016553.1 681870 681400 -3 - 471 Putative sugar isomerase involved in processing of exogenous sialic acid Sialic Acid Metabolism
fig|6666666.229913.peg.706 CDS CP016553.1 682062 684293 3 + 2232 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) Bacterial RNA-metabolizing Zn-dependent hydrolases;
Polyadenylation bacterial
fig|6666666.229913.peg.707 CDS CP016553.1 684378 685280 3 + 903 Lipoprotein nlpI precursor - none -
fig|6666666.229913.peg.708 CDS CP016553.1 685407 687194 3 + 1788 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) - none -
fig|6666666.229913.peg.709 CDS CP016553.1 687888 687277 -3 - 612 UDP-glucose dehydrogenase (EC 1.1.1.22) - none -
fig|6666666.229913.peg.710 CDS CP016553.1 687945 688100 3 + 156 Mobile element protein - none -
fig|6666666.229913.peg.711 CDS CP016553.1 688193 689296 2 + 1104 Sugar diacid utilization regulator SdaR D-galactarate, D-glucarate and D-glycerate catabolism;
D-galactarate, D-glucarate and D-glycerate catabolism - gjo
fig|6666666.229913.peg.712 CDS CP016553.1 689428 690702 1 + 1275 D-glycerate transporter (predicted) D-galactarate, D-glucarate and D-glycerate catabolism;
D-galactarate, D-glucarate and D-glycerate catabolism - gjo;
Glycerate metabolism
fig|6666666.229913.peg.713 CDS CP016553.1 690699 691838 3 + 1140 Glycerate kinase (EC 2.7.1.31) D-galactarate, D-glucarate and D-glycerate catabolism;
D-galactarate, D-glucarate and D-glycerate catabolism - gjo;
Glycerate metabolism;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Glycine and Serine Utilization;
Serine-glyoxylate cycle
fig|6666666.229913.peg.714 CDS CP016553.1 692448 691909 -3 - 540 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) Cell division-ribosomal stress proteins cluster;
Folate biosynthesis cluster;
Purine conversions
fig|6666666.229913.peg.715 CDS CP016553.1 694048 692687 -1 - 1362 TldE protein, part of TldE/TldD proteolytic complex Putative TldE-TldD proteolytic complex
fig|6666666.229913.peg.716 CDS CP016553.1 694165 694698 1 + 534 FIG138315: Putative alpha helix protein Putative TldE-TldD proteolytic complex
fig|6666666.229913.peg.717 CDS CP016553.1 696147 694756 -3 - 1392 Arsenic efflux pump protein Arsenic resistance
fig|6666666.229913.peg.718 CDS CP016553.1 696316 696152 -1 - 165 hypothetical protein - none -
fig|6666666.229913.peg.719 CDS CP016553.1 696837 696337 -3 - 501 Ribonuclease E inhibitor RraA RNA processing and degradation, bacterial
fig|6666666.229913.peg.720 CDS CP016553.1 697832 696888 -2 - 945 1,4-dihydroxy-2-naphthoate polyprenyltransferase (EC 2.5.1.74) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229913.peg.721 CDS CP016553.1 697962 698678 3 + 717 COG1720: Uncharacterized conserved protein tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229913.peg.722 CDS CP016553.1 699030 698776 -3 - 255 Mobile element protein - none -
fig|6666666.229913.peg.723 CDS CP016553.1 699675 699196 -3 - 480 hypothetical protein - none -
fig|6666666.229913.peg.724 CDS CP016553.1 701241 700051 -3 - 1191 hypothetical protein - none -
fig|6666666.229913.peg.725 CDS CP016553.1 702865 701261 -1 - 1605 hypothetical protein - none -
fig|6666666.229913.peg.726 CDS CP016553.1 703771 702875 -1 - 897 hypothetical protein - none -
fig|6666666.229913.peg.727 CDS CP016553.1 705261 704326 -3 - 936 Cell division protein FtsX Bacterial Cell Division
fig|6666666.229913.peg.728 CDS CP016553.1 705920 705270 -2 - 651 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) Bacterial Cell Division
fig|6666666.229913.peg.729 CDS CP016553.1 707335 705959 -1 - 1377 Signal recognition particle receptor protein FtsY (=alpha subunit) (TC 3.A.5.1.1) Bacterial Cell Division;
Bacterial signal recognition particle (SRP);
Universal GTPases
fig|6666666.229913.peg.730 CDS CP016553.1 707423 708007 2 + 585 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) CBSS-266117.6.peg.1260;
CBSS-269801.1.peg.1715;
RNA methylation
fig|6666666.229913.peg.731 CDS CP016553.1 708306 709271 3 + 966 PTS system, mannose-specific IIA component (EC 2.7.1.69) / PTS system, mannose-specific IIB component (EC 2.7.1.69) Mannose Metabolism;
Mannose Metabolism;
Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229913.peg.732 CDS CP016553.1 709289 710086 2 + 798 PTS system, mannose-specific IIC component (EC 2.7.1.69) Mannose Metabolism;
Sialic Acid Metabolism
fig|6666666.229913.peg.733 CDS CP016553.1 710100 710936 3 + 837 PTS system, mannose-specific IID component (EC 2.7.1.69) Mannose Metabolism;
Sialic Acid Metabolism
fig|6666666.229913.peg.734 CDS CP016553.1 711046 712221 1 + 1176 Cof protein - none -
fig|6666666.229913.peg.735 CDS CP016553.1 712512 713762 3 + 1251 Na+ dependent nucleoside transporter NupC Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.229913.peg.736 CDS CP016553.1 713888 714607 2 + 720 Purine nucleoside phosphorylase (EC 2.4.2.1) Adenosyl nucleosidases;
Deoxyribose and Deoxynucleoside Catabolism;
Purine conversions;
pyrimidine conversions
fig|6666666.229913.peg.737 CDS CP016553.1 714625 714768 1 + 144 hypothetical protein - none -
fig|6666666.229913.peg.738 CDS CP016553.1 714910 717297 1 + 2388 Biofilm PGA outer membrane secretin PgaA Biofilm Adhesin Biosynthesis
fig|6666666.229913.peg.739 CDS CP016553.1 717313 719229 1 + 1917 Biofilm PGA synthesis deacetylase PgaB (EC 3.-) Biofilm Adhesin Biosynthesis
fig|6666666.229913.peg.740 CDS CP016553.1 719238 720473 3 + 1236 Biofilm PGA synthesis N-glycosyltransferase PgaC (EC 2.4.-.-) Biofilm Adhesin Biosynthesis
fig|6666666.229913.peg.741 CDS CP016553.1 720476 720769 2 + 294 AagD - none -
fig|6666666.229913.peg.742 CDS CP016553.1 720859 720737 -1 - 123 hypothetical protein - none -
fig|6666666.229913.peg.743 CDS CP016553.1 722212 720887 -1 - 1326 Hexose phosphate uptake regulatory protein UhpC - none -
fig|6666666.229913.peg.744 CDS CP016553.1 722383 723015 1 + 633 Pyridoxamine 5@1-phosphate oxidase (EC 1.4.3.5) Pyridoxin (Vitamin B6) Biosynthesis
fig|6666666.229913.peg.745 CDS CP016553.1 723107 722967 -2 - 141 hypothetical protein - none -
fig|6666666.229913.peg.746 CDS CP016553.1 723763 724530 1 + 768 Mobile element protein - none -
fig|6666666.229913.peg.747 CDS CP016553.1 725173 725319 1 + 147 hypothetical protein - none -
fig|6666666.229913.peg.748 CDS CP016553.1 726307 725651 -1 - 657 Mobile element protein - none -
fig|6666666.229913.peg.749 CDS CP016553.1 726623 726459 -2 - 165 Mobile element protein - none -
fig|6666666.229913.peg.750 CDS CP016553.1 727480 727596 1 + 117 hypothetical protein - none -
fig|6666666.229913.peg.751 CDS CP016553.1 729811 728807 -1 - 1005 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis;
Pyridoxin (Vitamin B6) Biosynthesis
fig|6666666.229913.peg.752 CDS CP016553.1 729982 730692 1 + 711 Guanylate kinase (EC 2.7.4.8) CBSS-323097.3.peg.2594;
Purine conversions
fig|6666666.229913.peg.753 CDS CP016553.1 730759 731025 1 + 267 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) CBSS-176299.4.peg.1292;
RNA polymerase bacterial
fig|6666666.229913.peg.754 CDS CP016553.1 731071 733194 1 + 2124 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II / Guanosine-3@1,5@1-bis(diphosphate) 3@1-pyrophosphohydrolase (EC 3.1.7.2) CBSS-176299.4.peg.1292;
CBSS-176299.4.peg.1292;
Stringent Response, (p)ppGpp metabolism;
Stringent Response, (p)ppGpp metabolism
fig|6666666.229913.peg.755 CDS CP016553.1 733196 735277 2 + 2082 ATP-dependent DNA helicase RecG (EC 3.6.1.-) - none -
fig|6666666.229913.peg.756 CDS CP016553.1 735270 735764 3 + 495 Chorismate--pyruvate lyase (EC 4.1.3.40) Ubiquinone Biosynthesis
fig|6666666.229913.peg.757 CDS CP016553.1 735798 736625 3 + 828 Glutamate racemase (EC 5.1.1.3) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Peptidoglycan Biosynthesis
fig|6666666.229913.peg.759 CDS CP016553.1 742821 742955 3 + 135 hypothetical protein - none -
fig|6666666.229913.peg.760 CDS CP016553.1 743212 743487 1 + 276 Mobile element protein - none -
fig|6666666.229913.peg.761 CDS CP016553.1 743570 743710 2 + 141 Mobile element protein - none -
fig|6666666.229913.peg.762 CDS CP016553.1 743747 743995 2 + 249 Mobile element protein - none -
fig|6666666.229913.peg.763 CDS CP016553.1 744588 744965 3 + 378 Mobile element protein - none -
fig|6666666.229913.peg.764 CDS CP016553.1 745351 745974 1 + 624 Dephospho-CoA kinase (EC 2.7.1.24) Coenzyme A Biosynthesis
fig|6666666.229913.peg.765 CDS CP016553.1 745964 746176 2 + 213 FIG003276: zinc-binding protein - none -
fig|6666666.229913.peg.766 CDS CP016553.1 746176 746448 1 + 273 FIG00904058: hypothetical protein - none -
fig|6666666.229913.peg.767 CDS CP016553.1 746845 748218 1 + 1374 Sodium/glycine symporter GlyP - none -
fig|6666666.229913.peg.768 CDS CP016553.1 748447 748770 1 + 324 Ribosome hibernation protein YfiA Ribosome activity modulation
fig|6666666.229913.peg.769 CDS CP016553.1 749225 749473 2 + 249 unknown - none -
fig|6666666.229913.peg.770 CDS CP016553.1 750387 750088 -3 - 300 DNA-binding protein Fis DNA structural proteins, bacterial
fig|6666666.229913.peg.771 CDS CP016553.1 751430 750381 -2 - 1050 tRNA dihydrouridine synthase B (EC 1.-.-.-) tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229913.peg.772 CDS CP016553.1 752559 751675 -3 - 885 Ribosomal protein L11 methyltransferase (EC 2.1.1.-) Heat shock dnaK gene cluster extended;
Ribosome biogenesis bacterial
fig|6666666.229913.peg.773 CDS CP016553.1 753123 752572 -3 - 552 Protein involved in cell division - none -
fig|6666666.229913.peg.774 CDS CP016553.1 754569 753133 -3 - 1437 Pantothenate:Na+ symporter (TC 2.A.21.1.1) CBSS-221988.1.peg.1679;
Coenzyme A Biosynthesis
fig|6666666.229913.peg.775 CDS CP016553.1 754838 754566 -2 - 273 FIG003021: Membrane protein CBSS-221988.1.peg.1679
fig|6666666.229913.peg.776 CDS CP016553.1 756250 754862 -1 - 1389 FOG: TPR repeat - none -
fig|6666666.229913.peg.777 CDS CP016553.1 757130 756369 -2 - 762 Periplasmic protein TonB, links inner and outer membranes - none -
fig|6666666.229913.peg.778 CDS CP016553.1 757319 757185 -2 - 135 hypothetical protein - none -
fig|6666666.229913.peg.779 CDS CP016553.1 758774 757428 -2 - 1347 Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14) CBSS-221988.1.peg.1679;
Fatty Acid Biosynthesis FASII
fig|6666666.229913.peg.780 CDS CP016553.1 759285 758818 -3 - 468 Biotin carboxyl carrier protein of acetyl-CoA carboxylase CBSS-221988.1.peg.1679;
Fatty Acid Biosynthesis FASII
fig|6666666.229913.peg.781 CDS CP016553.1 759302 759454 2 + 153 hypothetical protein - none -
fig|6666666.229913.peg.782 CDS CP016553.1 759885 759409 -3 - 477 3-dehydroquinate dehydratase II (EC 4.2.1.10) CBSS-221988.1.peg.1679;
Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate);
Quinate degradation
fig|6666666.229913.peg.783 CDS CP016553.1 760985 759984 -2 - 1002 O-succinylbenzoate synthase (EC 4.2.1.113) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo;
Muconate lactonizing enzyme family
fig|6666666.229913.peg.784 CDS CP016553.1 761295 760966 -3 - 330 Nucleotidyltransferase (EC 2.7.7.-) - none -
fig|6666666.229913.peg.785 CDS CP016553.1 761696 761277 -2 - 420 Nucleotidyltransferase substrate binding protein, HI0074 - none -
fig|6666666.229913.peg.786 CDS CP016553.1 762593 761736 -2 - 858 Naphthoate synthase (EC 4.1.3.36) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229913.peg.787 CDS CP016553.1 763472 762705 -2 - 768 Triosephosphate isomerase (EC 5.3.1.1) CBSS-331978.3.peg.2915;
Glycolysis and Gluconeogenesis
fig|6666666.229913.peg.788 CDS CP016553.1 763645 764088 1 + 444 Histone acetyltransferase HPA2 and related acetyltransferases CBSS-216591.1.peg.168
fig|6666666.229913.peg.789 CDS CP016553.1 765529 764162 -1 - 1368 Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22) Heme and Siroheme Biosynthesis
fig|6666666.229913.peg.790 CDS CP016553.1 765982 765548 -1 - 435 Periplasmic/membrane protein associated with DUF414 - none -
fig|6666666.229913.peg.791 CDS CP016553.1 766555 765995 -1 - 561 Protein of unknown function DUF414 - none -
fig|6666666.229913.peg.792 CDS CP016553.1 767185 767973 1 + 789 VgrG-3 protein - none -
fig|6666666.229913.peg.793 CDS CP016553.1 768767 768108 -2 - 660 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses;
Ribosome biogenesis bacterial;
tRNA modification Bacteria
fig|6666666.229913.peg.794 CDS CP016553.1 769148 769837 2 + 690 Ribosyl nicotinamide transporter, PnuC-like NAD and NADP cofactor biosynthesis global
fig|6666666.229913.peg.795 CDS CP016553.1 770610 769912 -3 - 699 tRNA (adenine37-N(6))-methyltransferase TrmN6 (EC 2.1.1.223) RNA methylation
fig|6666666.229913.peg.796 CDS CP016553.1 770722 770594 -1 - 129 hypothetical protein - none -
fig|6666666.229913.peg.797 CDS CP016553.1 770709 772040 3 + 1332 ATP-dependent RNA helicase SrmB - none -
fig|6666666.229913.peg.798 CDS CP016553.1 772446 773750 3 + 1305 Predicted ATPase (AAA+ superfamily) - none -
fig|6666666.229913.peg.799 CDS CP016553.1 774302 774054 -2 - 249 Mobile element protein - none -
fig|6666666.229913.peg.800 CDS CP016553.1 774479 774339 -2 - 141 Mobile element protein - none -
fig|6666666.229913.peg.801 CDS CP016553.1 775322 775074 -2 - 249 Mobile element protein - none -
fig|6666666.229913.peg.802 CDS CP016553.1 775499 775359 -2 - 141 Mobile element protein - none -
fig|6666666.229913.peg.803 CDS CP016553.1 775857 775582 -3 - 276 Mobile element protein - none -
fig|6666666.229913.peg.804 CDS CP016553.1 776248 776114 -1 - 135 hypothetical protein - none -
fig|6666666.229913.peg.805 CDS CP016553.1 777951 776278 -3 - 1674 hypothetical protein - none -
fig|6666666.229913.peg.806 CDS CP016553.1 780267 777994 -3 - 2274 Glutathione biosynthesis bifunctional protein gshF (EC 6.3.2.2)(EC 6.3.2.3) Glutathione: Biosynthesis and gamma-glutamyl cycle
fig|6666666.229913.peg.807 CDS CP016553.1 780395 780264 -2 - 132 hypothetical protein - none -
fig|6666666.229913.peg.808 CDS CP016553.1 780499 782100 1 + 1602 Dca - none -
fig|6666666.229913.peg.809 CDS CP016553.1 782210 782064 -2 - 147 hypothetical protein - none -
fig|6666666.229913.peg.810 CDS CP016553.1 782359 782925 1 + 567 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent;
cAMP signaling in bacteria
fig|6666666.229913.peg.811 CDS CP016553.1 782935 784167 1 + 1233 ATP-dependent Clp protease ATP-binding subunit ClpX Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229913.peg.812 CDS CP016553.1 784553 784230 -2 - 324 FIG074102: hypothetical protein - none -
fig|6666666.229913.peg.813 CDS CP016553.1 784722 784546 -3 - 177 Phage-related protein - none -
fig|6666666.229913.peg.814 CDS CP016553.1 785857 785012 -1 - 846 membrane protein, putative - none -
fig|6666666.229913.peg.815 CDS CP016553.1 788089 785930 -1 - 2160 Copper-translocating P-type ATPase (EC 3.6.3.4) Copper Transport System;
Copper homeostasis
fig|6666666.229913.peg.816 CDS CP016553.1 788388 788176 -3 - 213 Copper chaperone Copper homeostasis
fig|6666666.229913.peg.817 CDS CP016553.1 788647 788868 1 + 222 Cu(I)-responsive transcriptional regulator Copper homeostasis
fig|6666666.229913.peg.818 CDS CP016553.1 789083 789274 2 + 192 Mobile element protein - none -
fig|6666666.229913.peg.819 CDS CP016553.1 789437 789685 2 + 249 Mobile element protein - none -
fig|6666666.229913.peg.820 CDS CP016553.1 790132 790353 1 + 222 probable transcription regulator - none -
fig|6666666.229913.peg.821 CDS CP016553.1 794870 790602 -2 - 4269 DNA-directed RNA polymerase beta@1 subunit (EC 2.7.7.6) Mycobacterium virulence operon involved in DNA transcription;
RNA polymerase bacterial
fig|6666666.229913.peg.822 CDS CP016553.1 799001 794973 -2 - 4029 DNA-directed RNA polymerase beta subunit (EC 2.7.7.6) Mycobacterium virulence operon involved in DNA transcription;
RNA polymerase bacterial
fig|6666666.229913.peg.823 CDS CP016553.1 799643 799272 -2 - 372 LSU ribosomal protein L7/L12 (P1/P2) LSU ribosomal proteins cluster
fig|6666666.229913.peg.824 CDS CP016553.1 800186 799695 -2 - 492 LSU ribosomal protein L10p (P0) LSU ribosomal proteins cluster
fig|6666666.229913.peg.825 CDS CP016553.1 800527 800357 -1 - 171 hypothetical protein - none -
fig|6666666.229913.peg.826 CDS CP016553.1 801231 800542 -3 - 690 LSU ribosomal protein L1p (L10Ae) LSU ribosomal proteins cluster
fig|6666666.229913.peg.827 CDS CP016553.1 801664 801236 -1 - 429 LSU ribosomal protein L11p (L12e) LSU ribosomal proteins cluster
fig|6666666.229913.peg.828 CDS CP016553.1 802371 801820 -3 - 552 Transcription antitermination protein NusG LSU ribosomal proteins cluster;
Transcription factors bacterial
fig|6666666.229913.peg.829 CDS CP016553.1 802783 802373 -1 - 411 Preprotein translocase subunit SecE (TC 3.A.5.1.1) LSU ribosomal proteins cluster
fig|6666666.229913.peg.830 CDS CP016553.1 803925 803221 -3 - 705 hypothetical protein - none -
fig|6666666.229913.peg.831 CDS CP016553.1 804239 803985 -2 - 255 Mobile element protein - none -
fig|6666666.229913.peg.832 CDS CP016553.1 804563 804243 -2 - 321 Mobile element protein - none -
fig|6666666.229913.peg.833 CDS CP016553.1 804850 804569 -1 - 282 hypothetical protein - none -
fig|6666666.229913.peg.834 CDS CP016553.1 805118 804942 -2 - 177 hypothetical protein - none -
fig|6666666.229913.peg.835 CDS CP016553.1 806137 805127 -1 - 1011 hypothetical protein - none -
fig|6666666.229913.peg.836 CDS CP016553.1 808290 806140 -3 - 2151 hypothetical protein - none -
fig|6666666.229913.peg.837 CDS CP016553.1 809101 808283 -1 - 819 hypothetical protein - none -
fig|6666666.229913.peg.838 CDS CP016553.1 809619 809440 -3 - 180 hypothetical protein - none -
fig|6666666.229913.peg.839 CDS CP016553.1 810691 809816 -1 - 876 33 kDa chaperonin (Heat shock protein 33) (HSP33) CBSS-584.1.peg.3382
fig|6666666.229913.peg.840 CDS CP016553.1 811175 810759 -2 - 417 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) CBSS-584.1.peg.3382;
Cell division-ribosomal stress proteins cluster;
DNA replication cluster 1;
Heat shock dnaK gene cluster extended
fig|6666666.229913.peg.841 CDS CP016553.1 811847 811188 -2 - 660 FIG001957: putative hydrolase CBSS-584.1.peg.3382
fig|6666666.229913.peg.842 CDS CP016553.1 811886 812476 2 + 591 ADP compounds hydrolase NudE (EC 3.6.1.-) Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229913.peg.843 CDS CP016553.1 813362 812481 -2 - 882 Transcriptional regulator, AraC family - none -
fig|6666666.229913.peg.844 CDS CP016553.1 814058 813432 -2 - 627 membrane protein ykgB - none -
fig|6666666.229913.peg.845 CDS CP016553.1 814427 816433 2 + 2007 oligopeptide transporter - none -
fig|6666666.229913.peg.846 CDS CP016553.1 816495 816923 3 + 429 hypothetical protein - none -
fig|6666666.229913.peg.847 CDS CP016553.1 816961 817770 1 + 810 3@1(2@1),5@1-bisphosphate nucleotidase (EC 3.1.3.7) - none -
fig|6666666.229913.peg.848 CDS CP016553.1 817793 819352 2 + 1560 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) Entner-Doudoroff Pathway;
Pentose phosphate pathway
fig|6666666.229913.peg.849 CDS CP016553.1 819605 820303 2 + 699 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type Entner-Doudoroff Pathway;
Pentose phosphate pathway
fig|6666666.229913.peg.850 CDS CP016553.1 820316 820774 2 + 459 Uncharacterized virulence-associated protein D - none -
fig|6666666.229913.peg.851 CDS CP016553.1 821308 821162 -1 - 147 hypothetical protein - none -
fig|6666666.229913.peg.852 CDS CP016553.1 821329 822783 1 + 1455 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) D-gluconate and ketogluconates metabolism;
Pentose phosphate pathway
fig|6666666.229913.peg.853 CDS CP016553.1 823260 823129 -3 - 132 hypothetical protein - none -
fig|6666666.229913.peg.854 CDS CP016553.1 823689 823570 -3 - 120 hypothetical protein - none -
fig|6666666.229913.peg.855 CDS CP016553.1 823691 824638 2 + 948 Magnesium and cobalt transport protein CorA Magnesium transport
fig|6666666.229913.peg.856 CDS CP016553.1 824654 825214 2 + 561 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) CBSS-630.2.peg.3360
fig|6666666.229913.peg.857 CDS CP016553.1 825239 825532 2 + 294 COG1872 - none -
fig|6666666.229913.peg.858 CDS CP016553.1 825649 826308 1 + 660 Oxygen-insensitive NAD(P)H nitroreductase (EC 1.-.-.-) / Dihydropteridine reductase (EC 1.5.1.34) - none -
fig|6666666.229913.peg.859 CDS CP016553.1 826551 827075 3 + 525 Phosphoglycerol transferase I (EC 2.7.8.20) Synthesis of osmoregulated periplasmic glucans
fig|6666666.229913.peg.860 CDS CP016553.1 827118 828347 3 + 1230 Phosphoglycerol transferase I (EC 2.7.8.20) Synthesis of osmoregulated periplasmic glucans
fig|6666666.229913.peg.861 CDS CP016553.1 828793 828650 -1 - 144 hypothetical protein - none -
fig|6666666.229913.peg.862 CDS CP016553.1 829713 829564 -3 - 150 hypothetical protein - none -
fig|6666666.229913.peg.863 CDS CP016553.1 830819 830082 -2 - 738 COG1496: Uncharacterized conserved protein - none -
fig|6666666.229913.peg.864 CDS CP016553.1 831795 830821 -3 - 975 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) RNA pseudouridine syntheses;
Ribosome biogenesis bacterial
fig|6666666.229913.peg.865 CDS CP016553.1 831902 832690 2 + 789 Probable component of the lipoprotein assembly complex (forms a complex with YaeT, YfgL, and NlpB) Lipopolysaccharide assembly
fig|6666666.229913.peg.866 CDS CP016553.1 833303 832728 -2 - 576 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) 5-FCL-like protein;
Folate Biosynthesis;
One-carbon metabolism by tetrahydropterines;
Serine-glyoxylate cycle
fig|6666666.229913.peg.867 CDS CP016553.1 833902 833597 -1 - 306 Z-ring-associated protein ZapA Bacterial Cytoskeleton
fig|6666666.229913.peg.868 CDS CP016553.1 833896 834630 1 + 735 FIG001590: Putative conserved exported protein precursor CBSS-87626.3.peg.3639
fig|6666666.229913.peg.869 CDS CP016553.1 834660 835946 3 + 1287 Xaa-Pro aminopeptidase (EC 3.4.11.9) Aminopeptidases (EC 3.4.11.-);
CBSS-87626.3.peg.3639
fig|6666666.229913.peg.870 CDS CP016553.1 836255 836100 -2 - 156 hypothetical protein - none -
fig|6666666.229913.peg.871 CDS CP016553.1 836441 836689 2 + 249 SSU ribosomal protein S16p Ribosome SSU bacterial
fig|6666666.229913.peg.872 CDS CP016553.1 836715 837242 3 + 528 16S rRNA processing protein RimM Ribosome biogenesis bacterial
fig|6666666.229913.peg.873 CDS CP016553.1 837308 838057 2 + 750 tRNA (Guanine37-N1) -methyltransferase (EC 2.1.1.31) RNA methylation;
Ribosome biogenesis bacterial;
tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229913.peg.874 CDS CP016553.1 838083 838433 3 + 351 LSU ribosomal protein L19p - none -
fig|6666666.229913.peg.875 CDS CP016553.1 839031 838543 -3 - 489 Rod shape-determining protein MreD Bacterial Cell Division;
Bacterial Cytoskeleton;
CBSS-354.1.peg.2917
fig|6666666.229913.peg.876 CDS CP016553.1 840104 839031 -2 - 1074 Rod shape-determining protein MreC Bacterial Cell Division;
Bacterial Cytoskeleton;
CBSS-354.1.peg.2917
fig|6666666.229913.peg.877 CDS CP016553.1 841229 840174 -2 - 1056 Rod shape-determining protein MreB Bacterial Cell Division;
Bacterial Cytoskeleton
fig|6666666.229913.peg.878 CDS CP016553.1 841479 843884 3 + 2406 3@1-to-5@1 exoribonuclease RNase R RNA processing and degradation, bacterial
fig|6666666.229913.peg.879 CDS CP016553.1 843881 844618 2 + 738 23S rRNA (guanosine-2@1-O-) -methyltransferase rlmB (EC 2.1.1.-) RNA methylation
fig|6666666.229913.peg.880 CDS CP016553.1 844761 844931 3 + 171 hypothetical protein - none -
fig|6666666.229913.peg.881 CDS CP016553.1 844951 846393 1 + 1443 Glycerol-3-phosphate transporter - none -
fig|6666666.229913.peg.882 CDS CP016553.1 846625 847707 1 + 1083 Glycerophosphoryl diester phosphodiesterase, periplasmic (EC 3.1.4.46) - none -
fig|6666666.229913.peg.883 CDS CP016553.1 848881 847763 -1 - 1119 Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake CBSS-272943.3.peg.1367;
Conserved gene cluster associated with Met-tRNA formyltransferase;
YrdC-YciO-Sua5 protein family
fig|6666666.229913.peg.884 CDS CP016553.1 849109 848912 -1 - 198 hypothetical protein - none -
fig|6666666.229913.peg.885 CDS CP016553.1 849548 849099 -2 - 450 LSU ribosomal protein L9p Primosomal replication protein N clusters with ribosomal proteins
fig|6666666.229913.peg.886 CDS CP016553.1 849794 849564 -2 - 231 SSU ribosomal protein S18p @ SSU ribosomal protein S18p, zinc-independent Primosomal replication protein N clusters with ribosomal proteins;
Ribosome SSU bacterial;
Ribosome SSU bacterial
fig|6666666.229913.peg.887 CDS CP016553.1 850133 849807 -2 - 327 Primosomal replication protein N Primosomal replication protein N clusters with ribosomal proteins
fig|6666666.229913.peg.888 CDS CP016553.1 850497 850120 -3 - 378 SSU ribosomal protein S6p Primosomal replication protein N clusters with ribosomal proteins;
Ribosome SSU bacterial
fig|6666666.229913.peg.889 CDS CP016553.1 851272 850649 -1 - 624 SOS-response repressor and protease LexA (EC 3.4.21.88) DNA repair, bacterial
fig|6666666.229913.peg.890 CDS CP016553.1 851480 853918 2 + 2439 Glycerol-3-phosphate acyltransferase (EC 2.3.1.15) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229913.peg.891 CDS CP016553.1 855803 853959 -2 - 1845 Lipid A export ATP-binding/permease protein MsbA - none -
fig|6666666.229913.peg.892 CDS CP016553.1 856808 855891 -2 - 918 transcriptional regulator MtrA - none -
fig|6666666.229913.peg.893 CDS CP016553.1 856912 857253 1 + 342 Possible carboxymuconolactone decarboxylase family protein (EC 4.1.1.44) - none -
fig|6666666.229913.peg.894 CDS CP016553.1 858393 857350 -3 - 1044 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) LOS core oligosaccharide biosynthesis
fig|6666666.229913.peg.895 CDS CP016553.1 858482 859207 2 + 726 3-deoxy-D-manno-octulosonic acid kinase (EC 2.7.1.-) - none -
fig|6666666.229913.peg.896 CDS CP016553.1 859750 859256 -1 - 495 Phosphopantetheine adenylyltransferase (EC 2.7.7.3) CBSS-266117.6.peg.1260;
CBSS-269801.1.peg.1715;
Coenzyme A Biosynthesis
fig|6666666.229913.peg.897 CDS CP016553.1 861034 859751 -1 - 1284 3-deoxy-D-manno-octulosonic-acid transferase (EC 2.-.-.-) KDO2-Lipid A biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.229913.peg.898 CDS CP016553.1 861133 861894 1 + 762 Lipopolysaccharide biosynthesis glycosyltransferase - none -
fig|6666666.229913.peg.899 CDS CP016553.1 862248 861952 -3 - 297 HigA protein (antitoxin to HigB) Toxin-antitoxin replicon stabilization systems
fig|6666666.229913.peg.900 CDS CP016553.1 862540 862265 -1 - 276 HigB toxin protein Toxin-antitoxin replicon stabilization systems
fig|6666666.229913.peg.901 CDS CP016553.1 864024 862657 -3 - 1368 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229913.peg.902 CDS CP016553.1 864210 865286 3 + 1077 hypothetical tRNA/rRNA methyltransferase yfiF [EC:2.1.1.-] RNA methylation;
tRNA modification Bacteria
fig|6666666.229913.peg.903 CDS CP016553.1 865574 865353 -2 - 222 4Fe-4S ferredoxin, iron-sulfur binding - none -
fig|6666666.229913.peg.904 CDS CP016553.1 865681 866376 1 + 696 Probable ribonuclease HI0526 precursor - none -
fig|6666666.229913.peg.905 CDS CP016553.1 866493 867656 3 + 1164 Phosphoglycerate kinase (EC 2.7.2.3) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis
fig|6666666.229913.peg.906 CDS CP016553.1 867721 868800 1 + 1080 Fructose-bisphosphate aldolase class II (EC 4.1.2.13) Glycolysis and Gluconeogenesis
fig|6666666.229913.peg.907 CDS CP016553.1 868975 868802 -1 - 174 hypothetical protein - none -
fig|6666666.229913.peg.908 CDS CP016553.1 869009 870151 2 + 1143 O-antigen ligase LOS core oligosaccharide biosynthesis
fig|6666666.229913.peg.909 CDS CP016553.1 870144 871067 3 + 924 Lysophospholipase L2 (EC 3.1.1.5) Triacylglycerol metabolism
fig|6666666.229913.peg.910 CDS CP016553.1 871923 871105 -3 - 819 Cof protein, HD superfamily hydrolase Housecleaning nucleoside triphosphate pyrophosphatases
fig|6666666.229913.peg.911 CDS CP016553.1 872142 872939 3 + 798 Acetolactate synthase large subunit (EC 2.2.1.6) - none -
fig|6666666.229913.peg.912 CDS CP016553.1 872891 873076 2 + 186 Acetolactate synthase large subunit (EC 2.2.1.6) - none -
fig|6666666.229913.peg.913 CDS CP016553.1 873281 873165 -2 - 117 hypothetical protein - none -
fig|6666666.229913.peg.914 CDS CP016553.1 874723 873539 -1 - 1185 Translation elongation factor Tu Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Translation elongation factors bacterial;
Universal GTPases
fig|6666666.229913.peg.915 CDS CP016553.1 875456 876370 2 + 915 Pantothenate kinase (EC 2.7.1.33) Coenzyme A Biosynthesis
fig|6666666.229913.peg.916 CDS CP016553.1 878761 876425 -1 - 2337 DNA gyrase subunit B (EC 5.99.1.3) Cell Division Subsystem including YidCD;
DNA gyrase subunits;
DNA replication cluster 1;
DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.229913.peg.917 CDS CP016553.1 880831 878942 -1 - 1890 ATP-dependent DNA helicase RecQ DNA repair, bacterial RecFOR pathway
fig|6666666.229913.peg.918 CDS CP016553.1 881142 880828 -3 - 315 Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly Biogenesis of cytochrome c oxidases
fig|6666666.229913.peg.919 CDS CP016553.1 881265 881384 3 + 120 hypothetical protein - none -
fig|6666666.229913.peg.920 CDS CP016553.1 881402 882652 2 + 1251 Diaminopimelate decarboxylase (EC 4.1.1.20) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229913.peg.921 CDS CP016553.1 883310 882705 -2 - 606 probable integral membrane protein Cj0014c - none -
fig|6666666.229913.peg.922 CDS CP016553.1 883511 884071 2 + 561 DNA-3-methyladenine glycosylase (EC 3.2.2.20) CBSS-326442.4.peg.1852;
DNA Repair Base Excision
fig|6666666.229913.peg.923 CDS CP016553.1 884137 886479 1 + 2343 Outer membrane protein Imp, required for envelope biogenesis / Organic solvent tolerance protein precursor Lipopolysaccharide assembly
fig|6666666.229913.peg.924 CDS CP016553.1 887033 886569 -2 - 465 Xanthine-guanine phosphoribosyltransferase (EC 2.4.2.22) Purine conversions
fig|6666666.229913.peg.925 CDS CP016553.1 887148 888608 3 + 1461 Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3) Dipeptidases (EC 3.4.13.-);
Recycling of Peptidoglycan Amino Acids
fig|6666666.229913.peg.926 CDS CP016553.1 889443 888688 -3 - 756 Short chain dehydrogenase - none -
fig|6666666.229913.peg.927 CDS CP016553.1 890048 889497 -2 - 552 Molybdopterin-guanine dinucleotide biosynthesis protein MobB Molybdenum cofactor biosynthesis;
ar-431-EC Molybdopterin-guanine dinucleotide biosynthesis
fig|6666666.229913.peg.928 CDS CP016553.1 890566 890129 -1 - 438 Sigma factor RpoE regulatory protein RseC Transcription initiation, bacterial sigma factors
fig|6666666.229913.peg.929 CDS CP016553.1 891532 890576 -1 - 957 Sigma factor RpoE negative regulatory protein RseB precursor Periplasmic Stress Response;
Transcription initiation, bacterial sigma factors
fig|6666666.229913.peg.930 CDS CP016553.1 892199 891615 -2 - 585 Sigma factor RpoE negative regulatory protein RseA Periplasmic Stress Response;
Transcription initiation, bacterial sigma factors
fig|6666666.229913.peg.931 CDS CP016553.1 892818 892243 -3 - 576 RNA polymerase sigma factor RpoE Transcription initiation, bacterial sigma factors
fig|6666666.229913.peg.932 CDS CP016553.1 893205 892951 -3 - 255 YgfY COG2938 - none -
fig|6666666.229913.peg.933 CDS CP016553.1 893574 893245 -3 - 330 Ethidium bromide-methyl viologen resistance protein EmrE - none -
fig|6666666.229913.peg.934 CDS CP016553.1 895356 893641 -3 - 1716 Prolyl-tRNA synthetase (EC 6.1.1.15), bacterial type tRNA aminoacylation, Pro
fig|6666666.229913.peg.935 CDS CP016553.1 895506 896900 3 + 1395 L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1) Selenocysteine metabolism
fig|6666666.229913.peg.936 CDS CP016553.1 896897 898756 2 + 1860 Selenocysteine-specific translation elongation factor Selenocysteine metabolism
fig|6666666.229913.peg.937 CDS CP016553.1 898802 899704 2 + 903 hypothetical protein - none -
fig|6666666.229913.peg.938 CDS CP016553.1 899779 900909 1 + 1131 hypothetical protein - none -
fig|6666666.229913.peg.939 CDS CP016553.1 900946 902316 1 + 1371 hypothetical protein - none -
fig|6666666.229913.peg.940 CDS CP016553.1 902313 902957 3 + 645 hypothetical protein - none -
fig|6666666.229913.peg.941 CDS CP016553.1 903149 903280 2 + 132 hypothetical protein - none -
fig|6666666.229913.peg.942 CDS CP016553.1 903559 905520 1 + 1962 ClpB protein Protein chaperones;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229913.peg.943 CDS CP016553.1 905481 906152 3 + 672 ClpB protein Protein chaperones;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229913.peg.944 CDS CP016553.1 906269 907177 2 + 909 hypothetical protein - none -
fig|6666666.229913.peg.945 CDS CP016553.1 907205 907687 2 + 483 hypothetical protein - none -
fig|6666666.229913.peg.946 CDS CP016553.1 907687 910560 1 + 2874 hypothetical protein - none -
fig|6666666.229913.peg.947 CDS CP016553.1 910570 911577 1 + 1008 hypothetical protein - none -
fig|6666666.229913.peg.948 CDS CP016553.1 911641 911868 1 + 228 hypothetical protein - none -
fig|6666666.229913.peg.949 CDS CP016553.1 912731 912150 -2 - 582 Molybdopterin biosynthesis molybdochelatase MogA Molybdenum cofactor biosynthesis
fig|6666666.229913.peg.950 CDS CP016553.1 913750 912821 -1 - 930 Phosphatidate cytidylyltransferase (EC 2.7.7.41) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229913.peg.951 CDS CP016553.1 914382 913750 -3 - 633 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229913.peg.952 CDS CP016553.1 915001 914393 -1 - 609 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229913.peg.953 CDS CP016553.1 916880 915012 -2 - 1869 Putative transport protein - none -
fig|6666666.229913.peg.954 CDS CP016553.1 917519 916920 -2 - 600 Ribonuclease HII (EC 3.1.26.4) Conserved gene cluster associated with Met-tRNA formyltransferase;
Ribonuclease H
fig|6666666.229913.peg.955 CDS CP016553.1 918696 917512 -3 - 1185 Lipid-A-disaccharide synthase (EC 2.4.1.182) KDO2-Lipid A biosynthesis;
Llipid A biosynthesis cluster
fig|6666666.229913.peg.956 CDS CP016553.1 919569 918781 -3 - 789 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase (EC 2.3.1.129) KDO2-Lipid A biosynthesis;
Llipid A biosynthesis cluster
fig|6666666.229913.peg.957 CDS CP016553.1 920000 919590 -2 - 411 3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabZ form (EC 4.2.1.59) Fatty Acid Biosynthesis FASII;
Llipid A biosynthesis cluster
fig|6666666.229913.peg.958 CDS CP016553.1 921159 920137 -3 - 1023 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC 2.3.1.-) KDO2-Lipid A biosynthesis;
Llipid A biosynthesis cluster
fig|6666666.229913.peg.959 CDS CP016553.1 921734 921159 -2 - 576 Outer membrane chaperone Skp (OmpH) precursor @ Outer membrane protein H precursor Lipopolysaccharide assembly;
Llipid A biosynthesis cluster;
Periplasmic Stress Response
fig|6666666.229913.peg.960 CDS CP016553.1 924250 921839 -1 - 2412 Outer membrane protein assembly factor YaeT precursor Lipopolysaccharide assembly;
Llipid A biosynthesis cluster
fig|6666666.229913.peg.961 CDS CP016553.1 925603 924269 -1 - 1335 Intramembrane protease RasP/YluC, implicated in cell division based on FtsL cleavage CBSS-83331.1.peg.3039;
Periplasmic Stress Response
fig|6666666.229913.peg.962 CDS CP016553.1 926481 925612 -3 - 870 Phosphatidate cytidylyltransferase (EC 2.7.7.41) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229913.peg.963 CDS CP016553.1 927215 926496 -2 - 720 Undecaprenyl diphosphate synthase (EC 2.5.1.31) CBSS-83331.1.peg.3039;
Isoprenoid Biosynthesis;
Isoprenoinds for Quinones;
Polyprenyl Diphosphate Biosynthesis
fig|6666666.229913.peg.964 CDS CP016553.1 928520 927237 -2 - 1284 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.267) CBSS-83331.1.peg.3039;
Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.229913.peg.965 CDS CP016553.1 929106 928549 -3 - 558 Ribosome recycling factor Ribosome recycling related cluster;
Translation termination factors bacterial
fig|6666666.229913.peg.966 CDS CP016553.1 929263 929120 -1 - 144 hypothetical protein - none -
fig|6666666.229913.peg.967 CDS CP016553.1 930044 929331 -2 - 714 Uridine monophosphate kinase (EC 2.7.4.22) CBSS-312309.3.peg.1965;
Ribosome recycling related cluster
fig|6666666.229913.peg.968 CDS CP016553.1 930189 930076 -3 - 114 hypothetical protein - none -
fig|6666666.229913.peg.969 CDS CP016553.1 931859 930201 -2 - 1659 Mediator of hyperadherence YidE - none -
fig|6666666.229913.peg.970 CDS CP016553.1 931983 933800 3 + 1818 ABC transporter ATP-binding protein - none -
fig|6666666.229913.peg.971 CDS CP016553.1 937140 934684 -3 - 2457 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229913.peg.972 CDS CP016553.1 938219 937464 -2 - 756 Glycerol-3-phosphate regulon repressor GlpR - none -
fig|6666666.229913.peg.973 CDS CP016553.1 939156 938281 -3 - 876 GlpG protein (membrane protein of glp regulon) - none -
fig|6666666.229913.peg.974 CDS CP016553.1 939199 939513 1 + 315 Uncharacterized protein PM1437 - none -
fig|6666666.229913.peg.975 CDS CP016553.1 939851 939525 -2 - 327 Thiosulfate sulfurtransferase GlpE (EC 2.8.1.1) Single-Rhodanese-domain proteins
fig|6666666.229913.peg.976 CDS CP016553.1 940516 939863 -1 - 654 FIG00903983: hypothetical protein - none -
fig|6666666.229913.peg.977 CDS CP016553.1 942291 940537 -3 - 1755 DNA recombination protein RmuC DNA repair, bacterial
fig|6666666.229913.peg.978 CDS CP016553.1 942294 942833 3 + 540 Similar to C-terminal Zn-finger domain of DNA topoisomerase I Conserved gene cluster associated with Met-tRNA formyltransferase;
DNA topoisomerases, Type I, ATP-independent
fig|6666666.229913.peg.979 CDS CP016553.1 942838 943389 1 + 552 TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA - none -
fig|6666666.229913.peg.980 CDS CP016553.1 943393 944193 1 + 801 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) Chorismate Synthesis;
Cluster containing Alanyl-tRNA synthetase;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229913.peg.981 CDS CP016553.1 945069 944188 -3 - 882 Protein rarD - none -
fig|6666666.229913.peg.982 CDS CP016553.1 945287 945102 -2 - 186 HTH-type transcriptional regulator IlvY Alanine biosynthesis;
LysR-family proteins in Escherichia coli;
LysR-family proteins in Salmonella enterica Typhimurium
fig|6666666.229913.peg.983 CDS CP016553.1 945928 946227 1 + 300 Ketol-acid reductoisomerase (EC 1.1.1.86) Coenzyme A Biosynthesis
fig|6666666.229913.peg.984 CDS CP016553.1 946391 946507 2 + 117 SSU ribosomal protein S12p (S23e) Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Ribosomal protein S12p Asp methylthiotransferase;
Ribosome SSU bacterial
fig|6666666.229913.peg.985 CDS CP016553.1 946686 946823 3 + 138 SSU ribosomal protein S12p (S23e) Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Ribosomal protein S12p Asp methylthiotransferase;
Ribosome SSU bacterial
fig|6666666.229913.peg.986 CDS CP016553.1 946976 947446 2 + 471 SSU ribosomal protein S7p (S5e) Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Ribosome SSU bacterial
fig|6666666.229913.peg.987 CDS CP016553.1 947561 949663 2 + 2103 Translation elongation factor G Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Translation elongation factor G family;
Translation elongation factors bacterial;
Universal GTPases
fig|6666666.229913.peg.988 CDS CP016553.1 949727 950911 2 + 1185 Translation elongation factor Tu Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Translation elongation factors bacterial;
Universal GTPases
fig|6666666.229913.peg.989 CDS CP016553.1 951916 950975 -1 - 942 Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229913.peg.990 CDS CP016553.1 952079 953566 2 + 1488 Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229913.peg.991 CDS CP016553.1 953582 954610 2 + 1029 Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229913.peg.992 CDS CP016553.1 954616 956073 1 + 1458 L-xylulose/3-keto-L-gulonate kinase (EC 2.7.1.-) L-ascorbate utilization (and related gene clusters)
fig|6666666.229913.peg.993 CDS CP016553.1 958436 956121 -2 - 2316 Transcription accessory protein (S1 RNA-binding domain) CBSS-243265.1.peg.198;
Cell division-ribosomal stress proteins cluster;
Transcription factors bacterial
fig|6666666.229913.peg.994 CDS CP016553.1 958689 959063 3 + 375 hypothetical protein - none -
fig|6666666.229913.peg.995 CDS CP016553.1 959105 959362 2 + 258 Mobile element protein - none -
fig|6666666.229913.peg.996 CDS CP016553.1 959356 959865 1 + 510 Mobile element protein - none -
fig|6666666.229913.peg.997 CDS CP016553.1 960800 959913 -2 - 888 LysR family transcriptional regulator YeiE LysR-family proteins in Escherichia coli
fig|6666666.229913.peg.998 CDS CP016553.1 960910 962379 1 + 1470 Sodium-dependent transporter - none -
fig|6666666.229913.peg.999 CDS CP016553.1 962391 962990 3 + 600 Phosphoglycerate mutase (EC 5.4.2.1) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis;
Phosphoglycerate mutase protein family
fig|6666666.229913.peg.1000 CDS CP016553.1 963176 963340 2 + 165 hypothetical protein - none -
fig|6666666.229913.peg.1001 CDS CP016553.1 963576 963385 -3 - 192 Transcription accessory protein (S1 RNA-binding domain) CBSS-243265.1.peg.198;
Cell division-ribosomal stress proteins cluster;
Transcription factors bacterial
fig|6666666.229913.peg.1002 CDS CP016553.1 963727 964209 1 + 483 Transcription elongation factor GreB CBSS-243265.1.peg.198;
Transcription factors bacterial
fig|6666666.229913.peg.1003 CDS CP016553.1 964483 964292 -1 - 192 hypothetical protein - none -
fig|6666666.229913.peg.1004 CDS CP016553.1 965085 964498 -3 - 588 DNA-directed RNA polymerase specialized sigma subunit, sigma24-like - none -
fig|6666666.229913.peg.1005 CDS CP016553.1 965552 965271 -2 - 282 hypothetical protein - none -
fig|6666666.229913.peg.1006 CDS CP016553.1 965814 966551 3 + 738 Putative preQ0 transporter Queuosine-Archaeosine Biosynthesis
fig|6666666.229913.peg.1007 CDS CP016553.1 967870 966620 -1 - 1251 Uncharacterized protein EC-HemY, likely associated with heme metabolism based on gene clustering with hemC, hemD in Proteobacteria (unrelated to HemY-type PPO in GramPositives) - none -
fig|6666666.229913.peg.1008 CDS CP016553.1 969268 967883 -1 - 1386 Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) Heme and Siroheme Biosynthesis
fig|6666666.229913.peg.1009 CDS CP016553.1 970045 969299 -1 - 747 Uroporphyrinogen-III synthase (EC 4.2.1.75) Heme and Siroheme Biosynthesis
fig|6666666.229913.peg.1010 CDS CP016553.1 970985 970059 -2 - 927 Porphobilinogen deaminase (EC 2.5.1.61) Heme and Siroheme Biosynthesis
fig|6666666.229913.peg.1011 CDS CP016553.1 971141 973642 2 + 2502 Adenylate cyclase (EC 4.6.1.1) cAMP signaling in bacteria
fig|6666666.229913.peg.1012 CDS CP016553.1 973652 974281 2 + 630 Nitrate/nitrite response regulator protein - none -
fig|6666666.229913.peg.1013 CDS CP016553.1 974349 976208 3 + 1860 Uncharacterized protein YtfM precursor Cluster Ytf and putative sugar transporter;
Putative sugar ABC transporter (ytf cluster)
fig|6666666.229913.peg.1014 CDS CP016553.1 976236 980117 3 + 3882 Uncharacterized protein YtfN Cluster Ytf and putative sugar transporter;
Putative sugar ABC transporter (ytf cluster)
fig|6666666.229913.peg.1015 CDS CP016553.1 980120 981667 2 + 1548 Exopolyphosphatase (EC 3.6.1.11) Phosphate metabolism;
Polyphosphate
fig|6666666.229913.peg.1016 CDS CP016553.1 983348 981732 -2 - 1617 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) CBSS-584.1.peg.3382;
Pyruvate metabolism I: anaplerotic reactions, PEP;
Serine-glyoxylate cycle
fig|6666666.229913.peg.1017 CDS CP016553.1 983580 983455 -3 - 126 hypothetical protein - none -
fig|6666666.229913.peg.1018 CDS CP016553.1 983606 984250 2 + 645 converved hypothetical protein - none -
fig|6666666.229913.peg.1019 CDS CP016553.1 984299 985018 2 + 720 NADH pyrophosphatase (EC 3.6.1.22) DNA uptake cluster;
Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229913.peg.1020 CDS CP016553.1 985187 986251 2 + 1065 Uroporphyrinogen III decarboxylase (EC 4.1.1.37) Heme and Siroheme Biosynthesis
fig|6666666.229913.peg.1021 CDS CP016553.1 986269 986859 1 + 591 FIG01200173: hypothetical protein - none -
fig|6666666.229913.peg.1022 CDS CP016553.1 987026 987298 2 + 273 DNA-binding protein HU-alpha DNA structural proteins, bacterial;
DNA uptake cluster
fig|6666666.229913.peg.1023 CDS CP016553.1 987424 988221 1 + 798 Transcriptional regulator of glmS gene, DeoR family - none -
fig|6666666.229913.peg.1024 CDS CP016553.1 988275 990107 3 + 1833 Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) Sialic Acid Metabolism;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229913.peg.1025 CDS CP016553.1 991323 990259 -3 - 1065 FIG01220323: hypothetical protein - none -
fig|6666666.229913.peg.1026 CDS CP016553.1 991423 992313 1 + 891 Transcriptional regulator, LysR family - none -
fig|6666666.229913.peg.1027 CDS CP016553.1 993561 992452 -3 - 1110 Putative exported protein precursor - none -
fig|6666666.229913.peg.1028 CDS CP016553.1 995353 993698 -1 - 1656 Carboxylesterase type B - none -
fig|6666666.229913.peg.1029 CDS CP016553.1 996559 995579 -1 - 981 Aldo-keto reductase - none -
fig|6666666.229913.peg.1030 CDS CP016553.1 997468 996623 -1 - 846 oxidoreductase of aldo/keto reductase family, subgroup 1 - none -
fig|6666666.229913.peg.1031 CDS CP016553.1 997651 998544 1 + 894 Transcriptional regulator, LysR family - none -
fig|6666666.229913.peg.1032 CDS CP016553.1 999448 998633 -1 - 816 putative tetracenomycin polyketide synthesis O-methyltransferase - none -
fig|6666666.229913.peg.1033 CDS CP016553.1 1001285 999786 -2 - 1500 ATPase component BioM of energizing module of biotin ECF transporter Biotin biosynthesis;
Biotin synthesis cluster
fig|6666666.229913.peg.1034 CDS CP016553.1 1001411 1002079 2 + 669 Uncharacterized protein conserved in bacteria - none -
fig|6666666.229913.peg.1035 CDS CP016553.1 1002082 1002555 1 + 474 UPF0225 protein YchJ Broadly distributed proteins not in subsystems
fig|6666666.229913.peg.1036 CDS CP016553.1 1002552 1003382 3 + 831 Ribonuclease BN (EC 3.1.-.-) - none -
fig|6666666.229913.peg.1037 CDS CP016553.1 1003379 1003813 2 + 435 D-tyrosyl-tRNA(Tyr) deacylase (EC 3.6.1.n1) - none -
fig|6666666.229913.peg.1038 CDS CP016553.1 1003979 1005187 2 + 1209 Sodium/glutamate symport protein - none -
fig|6666666.229913.peg.1039 CDS CP016553.1 1006631 1005243 -2 - 1389 Copper sensory histidine kinase CpxA Orphan regulatory proteins
fig|6666666.229913.peg.1040 CDS CP016553.1 1007371 1006676 -1 - 696 Copper-sensing two-component system response regulator CpxR Orphan regulatory proteins
fig|6666666.229913.peg.1041 CDS CP016553.1 1007826 1007413 -3 - 414 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex Lipopolysaccharide assembly
fig|6666666.229913.peg.1042 CDS CP016553.1 1008917 1007892 -2 - 1026 Nucleoid-associated protein NdpA CBSS-211586.1.peg.1979
fig|6666666.229913.peg.1043 CDS CP016553.1 1009010 1009267 2 + 258 FIG002927: hypothetical protein CBSS-211586.1.peg.1979
fig|6666666.229913.peg.1044 CDS CP016553.1 1009272 1011011 3 + 1740 FIG001881: hydrolase of alkaline phosphatase superfamily CBSS-211586.1.peg.1979
fig|6666666.229913.peg.1045 CDS CP016553.1 1011285 1011148 -3 - 138 hypothetical protein - none -
fig|6666666.229913.peg.1046 CDS CP016553.1 1011271 1012260 1 + 990 Cytosine deaminase (EC 3.5.4.1) CBSS-326442.4.peg.1852;
Creatine and Creatinine Degradation;
pyrimidine conversions
fig|6666666.229913.peg.1047 CDS CP016553.1 1013224 1012358 -1 - 867 Nucleoside triphosphate pyrophosphohydrolase MazG (EC 3.6.1.8) Nucleoside triphosphate pyrophosphohydrolase MazG
fig|6666666.229913.peg.1048 CDS CP016553.1 1013334 1013759 3 + 426 Universal stress protein A Universal stress protein family
fig|6666666.229913.peg.1049 CDS CP016553.1 1013959 1016583 1 + 2625 Alanyl-tRNA synthetase (EC 6.1.1.7) Cluster containing Alanyl-tRNA synthetase;
tRNA aminoacylation, Ala
fig|6666666.229913.peg.1050 CDS CP016553.1 1016706 1016888 3 + 183 Carbon storage regulator Carbon Starvation;
Carbon storage regulator
fig|6666666.229913.peg.1051 CDS CP016553.1 1016920 1018284 1 + 1365 Phosphomannomutase (EC 5.4.2.8) Mannose Metabolism
fig|6666666.229913.peg.1052 CDS CP016553.1 1018360 1019247 1 + 888 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) - none -
fig|6666666.229913.peg.1053 CDS CP016553.1 1019402 1019719 2 + 318 Methionine repressor MetJ Methionine Biosynthesis
fig|6666666.229913.peg.1054 CDS CP016553.1 1019806 1020540 1 + 735 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) Cluster containing Glutathione synthetase;
Heat shock dnaK gene cluster extended;
RNA methylation
fig|6666666.229913.peg.1055 CDS CP016553.1 1020558 1021115 3 + 558 UPF0301 protein YqgE Cluster containing Glutathione synthetase
fig|6666666.229913.peg.1056 CDS CP016553.1 1021115 1021534 2 + 420 Putative Holliday junction resolvase YggF Cluster containing Alanyl-tRNA synthetase;
Cluster containing Glutathione synthetase
fig|6666666.229913.peg.1057 CDS CP016553.1 1022941 1021631 -1 - 1311 Enolase (EC 4.2.1.11) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis;
Serine-glyoxylate cycle
fig|6666666.229913.peg.1058 CDS CP016553.1 1023126 1023010 -3 - 117 hypothetical protein - none -
fig|6666666.229913.peg.1059 CDS CP016553.1 1023350 1023210 -2 - 141 hypothetical protein - none -
fig|6666666.229913.peg.1060 CDS CP016553.1 1024732 1023581 -1 - 1152 tRNA-specific 2-thiouridylase MnmA RNA methylation
fig|6666666.229913.peg.1061 CDS CP016553.1 1025250 1024993 -3 - 258 Probable exported or periplasmic protein in ApbE locus Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229913.peg.1062 CDS CP016553.1 1026417 1025329 -3 - 1089 Thiamin biosynthesis lipoprotein ApbE - none -
fig|6666666.229913.peg.1063 CDS CP016553.1 1026563 1026414 -2 - 150 hypothetical protein - none -
fig|6666666.229913.peg.1064 CDS CP016553.1 1027803 1026568 -3 - 1236 Na(+)-translocating NADH-quinone reductase subunit F (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229913.peg.1065 CDS CP016553.1 1028411 1027815 -2 - 597 Na(+)-translocating NADH-quinone reductase subunit E (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229913.peg.1066 CDS CP016553.1 1029044 1028415 -2 - 630 Na(+)-translocating NADH-quinone reductase subunit D (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229913.peg.1067 CDS CP016553.1 1029829 1029044 -1 - 786 Na(+)-translocating NADH-quinone reductase subunit C (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229913.peg.1068 CDS CP016553.1 1031057 1029822 -2 - 1236 Na(+)-translocating NADH-quinone reductase subunit B (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229913.peg.1069 CDS CP016553.1 1032400 1031060 -1 - 1341 Na(+)-translocating NADH-quinone reductase subunit A (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229913.peg.1070 CDS CP016553.1 1032592 1032425 -1 - 168 hypothetical protein - none -
fig|6666666.229913.peg.1071 CDS CP016553.1 1032746 1032630 -2 - 117 hypothetical protein - none -
fig|6666666.229913.peg.1072 CDS CP016553.1 1033067 1032756 -2 - 312 Cell division protein BolA Bacterial Cell Division;
CBSS-339671.5.peg.589
fig|6666666.229913.peg.1073 CDS CP016553.1 1033171 1033764 1 + 594 Hypothetical lipoprotein YajG precursor CBSS-339671.5.peg.589
fig|6666666.229913.peg.1074 CDS CP016553.1 1033870 1033745 -1 - 126 hypothetical protein - none -
fig|6666666.229913.peg.1075 CDS CP016553.1 1035344 1034265 -2 - 1080 Membrane-bound lytic murein transglycosylase C precursor (EC 3.2.1.-) Murein Hydrolases
fig|6666666.229913.peg.1076 CDS CP016553.1 1035625 1035347 -1 - 279 FIG001341: Probable Fe(2+)-trafficking protein YggX Heat shock dnaK gene cluster extended
fig|6666666.229913.peg.1077 CDS CP016553.1 1036862 1035603 -2 - 1260 A/G-specific adenine glycosylase (EC 3.2.2.-) DNA repair, bacterial
fig|6666666.229913.peg.1078 CDS CP016553.1 1036960 1037727 1 + 768 tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33) CBSS-83333.1.peg.2911;
RNA methylation;
tRNA modification Bacteria
fig|6666666.229913.peg.1079 CDS CP016553.1 1037757 1038098 3 + 342 FIG002060: uncharacterized protein YggL CBSS-83333.1.peg.2911
fig|6666666.229913.peg.1080 CDS CP016553.1 1038317 1039315 2 + 999 Ferric iron ABC transporter, iron-binding protein Iron acquisition in Streptococcus
fig|6666666.229913.peg.1081 CDS CP016553.1 1039396 1040916 1 + 1521 Ferric iron ABC transporter, permease protein Iron acquisition in Streptococcus
fig|6666666.229913.peg.1082 CDS CP016553.1 1040932 1041990 1 + 1059 Ferric iron ABC transporter, ATP-binding protein Iron acquisition in Streptococcus
fig|6666666.229913.peg.1083 CDS CP016553.1 1042979 1042011 -2 - 969 tRNA-dihydrouridine synthase C (EC 1.-.-.-) Murein hydrolase regulation and cell death;
tRNA modification Bacteria
fig|6666666.229913.peg.1084 CDS CP016553.1 1043858 1042983 -2 - 876 DnaJ-like protein DjlA - none -
fig|6666666.229913.peg.1085 CDS CP016553.1 1044584 1043940 -2 - 645 Orotate phosphoribosyltransferase (EC 2.4.2.10) De Novo Pyrimidine Synthesis
fig|6666666.229913.peg.1086 CDS CP016553.1 1045310 1044594 -2 - 717 Ribonuclease PH (EC 2.7.7.56) Heat shock dnaK gene cluster extended;
tRNA processing
fig|6666666.229913.peg.1087 CDS CP016553.1 1045428 1046291 3 + 864 Protein YicC CBSS-323097.3.peg.2594
fig|6666666.229913.peg.1088 CDS CP016553.1 1046319 1047206 3 + 888 Folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress - none -
fig|6666666.229913.peg.1089 CDS CP016553.1 1047325 1047714 1 + 390 Patatin-like phospholipase - none -
fig|6666666.229913.peg.1090 CDS CP016553.1 1047789 1048511 3 + 723 SSU ribosomal protein S2p (SAe) CBSS-312309.3.peg.1965;
Ribosome SSU bacterial;
Ribosome recycling related cluster
fig|6666666.229913.peg.1091 CDS CP016553.1 1048560 1048673 3 + 114 hypothetical protein - none -
fig|6666666.229913.peg.1092 CDS CP016553.1 1048666 1049514 1 + 849 Translation elongation factor Ts CBSS-312309.3.peg.1965;
Ribosome recycling related cluster;
Translation elongation factors bacterial
fig|6666666.229913.peg.1093 CDS CP016553.1 1049822 1050508 2 + 687 DNA recombination and repair protein RecO CBSS-176299.4.peg.1292;
DNA repair, bacterial RecFOR pathway;
Glycyl-tRNA synthetase containing cluster
fig|6666666.229913.peg.1094 CDS CP016553.1 1050510 1051826 3 + 1317 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) RNA methylation
fig|6666666.229913.peg.1095 CDS CP016553.1 1051836 1054067 3 + 2232 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I CBSS-176299.4.peg.1292;
Stringent Response, (p)ppGpp metabolism
fig|6666666.229913.peg.1096 CDS CP016553.1 1054093 1054449 1 + 357 Diacylglycerol kinase (EC 2.7.1.107) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Riboflavin synthesis cluster
fig|6666666.229913.peg.1097 CDS CP016553.1 1054465 1055124 1 + 660 Hydrolase, haloacid dehalogenase-like family - none -
fig|6666666.229913.peg.1098 CDS CP016553.1 1055943 1055143 -3 - 801 Orf2 - none -
fig|6666666.229913.peg.1099 CDS CP016553.1 1059195 1056097 -3 - 3099 RND multidrug efflux transporter; Acriflavin resistance protein Multidrug Resistance Efflux Pumps
fig|6666666.229913.peg.1100 CDS CP016553.1 1060405 1059209 -1 - 1197 Probable Co/Zn/Cd efflux system membrane fusion protein Cobalt-zinc-cadmium resistance
fig|6666666.229913.peg.1101 CDS CP016553.1 1060997 1060431 -2 - 567 Probable Co/Zn/Cd efflux system membrane fusion protein Cobalt-zinc-cadmium resistance
fig|6666666.229913.peg.1102 CDS CP016553.1 1062031 1061198 -1 - 834 Cell division protein - none -
fig|6666666.229913.peg.1103 CDS CP016553.1 1064381 1062141 -2 - 2241 Helicase PriA essential for oriC/DnaA-independent DNA replication Conserved gene cluster associated with Met-tRNA formyltransferase
fig|6666666.229913.peg.1104 CDS CP016553.1 1064566 1065429 1 + 864 Involved in lipopolysaccharide biosynthesis - none -
fig|6666666.229913.peg.1105 CDS CP016553.1 1066440 1065436 -3 - 1005 putative capsular polysaccharide synthesis protein - none -
fig|6666666.229913.peg.1106 CDS CP016553.1 1067297 1066449 -2 - 849 Lipooligosaccharide biosynthesis protein lex-1 (EC 2.-.-.-) - none -
fig|6666666.229913.peg.1107 CDS CP016553.1 1067555 1067767 2 + 213 LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-dependent - none -
fig|6666666.229913.peg.1108 CDS CP016553.1 1067830 1068522 1 + 693 Beta-1,4-galactosyltransferase LOS core oligosaccharide biosynthesis
fig|6666666.229913.peg.1109 CDS CP016553.1 1068523 1069545 1 + 1023 COG0859: ADP-heptose:LPS heptosyltransferase - none -
fig|6666666.229913.peg.1110 CDS CP016553.1 1069555 1070607 1 + 1053 COG0859: ADP-heptose:LPS heptosyltransferase - none -
fig|6666666.229913.peg.1111 CDS CP016553.1 1071467 1070610 -2 - 858 Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) DNA Repair Base Excision
fig|6666666.229913.peg.1112 CDS CP016553.1 1071677 1071507 -2 - 171 LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-independent - none -
fig|6666666.229913.peg.1113 CDS CP016553.1 1071862 1071689 -1 - 174 LSU ribosomal protein L28p - none -
fig|6666666.229913.peg.1114 CDS CP016553.1 1072771 1072112 -1 - 660 DNA repair protein RadC DNA repair, bacterial
fig|6666666.229913.peg.1115 CDS CP016553.1 1072974 1072822 -3 - 153 hypothetical protein - none -
fig|6666666.229913.peg.1116 CDS CP016553.1 1072949 1074148 2 + 1200 Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) / Phosphopantothenoylcysteine synthetase (EC 6.3.2.5) Coenzyme A Biosynthesis;
Coenzyme A Biosynthesis
fig|6666666.229913.peg.1117 CDS CP016553.1 1074217 1074672 1 + 456 Deoxyuridine 5@1-triphosphate nucleotidohydrolase (EC 3.6.1.23) Housecleaning nucleoside triphosphate pyrophosphatases;
Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229913.peg.1118 CDS CP016553.1 1074672 1075271 3 + 600 Transcriptional regulator SlmA, TetR family - none -
fig|6666666.229913.peg.1119 CDS CP016553.1 1075295 1075513 2 + 219 FIG00696234: hypothetical protein - none -
fig|6666666.229913.peg.1120 CDS CP016553.1 1075551 1076195 3 + 645 Cyclic AMP receptor protein cAMP signaling in bacteria
fig|6666666.229913.peg.1121 CDS CP016553.1 1077698 1076328 -2 - 1371 Glutathione reductase (EC 1.8.1.7) Glutathione: Redox cycle
fig|6666666.229913.peg.1122 CDS CP016553.1 1078638 1077793 -3 - 846 Protein involved in catabolism of external DNA DNA processing cluster;
DNA uptake cluster
fig|6666666.229913.peg.1123 CDS CP016553.1 1081300 1078733 -1 - 2568 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) DNA uptake cluster;
Peptidoglycan Biosynthesis;
Type IV pilus
fig|6666666.229913.peg.1124 CDS CP016553.1 1081434 1082243 3 + 810 Type IV pilus biogenesis protein PilM; Competence protein A DNA uptake cluster;
Type IV pilus
fig|6666666.229913.peg.1125 CDS CP016553.1 1082254 1082772 1 + 519 Type IV pilus biogenesis protein PilN; Competence protein B DNA uptake cluster;
Type IV pilus
fig|6666666.229913.peg.1126 CDS CP016553.1 1082769 1083293 3 + 525 Competence protein C; Chromosome segregation ATPases DNA uptake cluster
fig|6666666.229913.peg.1127 CDS CP016553.1 1083293 1083685 2 + 393 Type IV pilus biogenesis protein PilQ; Competence protein D DNA uptake cluster;
Type IV pilus
fig|6666666.229913.peg.1128 CDS CP016553.1 1083706 1085115 1 + 1410 Type IV pilus biogenesis protein PilQ; Competence protein E DNA uptake cluster;
Type IV pilus
fig|6666666.229913.peg.1129 CDS CP016553.1 1085329 1085856 1 + 528 Shikimate kinase I (EC 2.7.1.71) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229913.peg.1130 CDS CP016553.1 1085880 1086968 3 + 1089 3-dehydroquinate synthase (EC 4.2.3.4) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate);
Type IV pilus
fig|6666666.229913.peg.1131 CDS CP016553.1 1086971 1087825 2 + 855 Methyl-directed repair DNA adenine methylase (EC 2.1.1.72) DNA repair, bacterial
fig|6666666.229913.peg.1132 CDS CP016553.1 1088591 1088064 -2 - 528 probable integral membrane protein NMA1777 - none -
fig|6666666.229913.peg.1133 CDS CP016553.1 1088944 1088642 -1 - 303 probable integral membrane protein NMA1777 - none -
fig|6666666.229913.peg.1134 CDS CP016553.1 1089387 1088944 -3 - 444 Transcriptional regulator, MarR family - none -
fig|6666666.229913.peg.1135 CDS CP016553.1 1089535 1090650 1 + 1116 Membrane fusion protein of RND family multidrug efflux pump Multidrug Resistance Efflux Pumps
fig|6666666.229913.peg.1136 CDS CP016553.1 1091234 1091046 -2 - 189 hypothetical protein - none -
fig|6666666.229913.peg.1137 CDS CP016553.1 1091401 1093572 1 + 2172 Hypothetical SecA-related protein - none -
fig|6666666.229913.peg.1138 CDS CP016553.1 1093786 1094352 1 + 567 RND multidrug efflux transporter; Acriflavin resistance protein Multidrug Resistance Efflux Pumps
fig|6666666.229913.peg.1139 CDS CP016553.1 1095027 1094542 -3 - 486 Single-stranded DNA-binding protein DNA repair, bacterial;
DNA repair, bacterial RecFOR pathway
fig|6666666.229913.peg.1140 CDS CP016553.1 1095197 1098028 2 + 2832 Excinuclease ABC subunit A DNA repair, UvrABC system
fig|6666666.229913.peg.1141 CDS CP016553.1 1098106 1098480 1 + 375 hypothetical protein - none -
fig|6666666.229913.peg.1142 CDS CP016553.1 1098522 1098779 3 + 258 Mobile element protein - none -
fig|6666666.229913.peg.1143 CDS CP016553.1 1098773 1099282 2 + 510 Mobile element protein - none -
fig|6666666.229913.peg.1144 CDS CP016553.1 1099861 1099358 -1 - 504 Mercuric resistance operon regulatory protein - none -
fig|6666666.229913.peg.1145 CDS CP016553.1 1100200 1099889 -1 - 312 Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives DNA replication cluster 1
fig|6666666.229913.peg.1146 CDS CP016553.1 1100292 1100609 3 + 318 hypothetical protein - none -
fig|6666666.229913.peg.1147 CDS CP016553.1 1100619 1103381 3 + 2763 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) - none -
fig|6666666.229913.peg.1148 CDS CP016553.1 1103458 1103862 1 + 405 Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-) Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229913.peg.1149 CDS CP016553.1 1105388 1104354 -2 - 1035 DNA polymerase III delta subunit (EC 2.7.7.7) CBSS-208964.1.peg.3988
fig|6666666.229913.peg.1150 CDS CP016553.1 1105891 1105388 -1 - 504 LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B) CBSS-208964.1.peg.3988;
KDO2-Lipid A biosynthesis;
Lipopolysaccharide assembly
fig|6666666.229913.peg.1151 CDS CP016553.1 1105880 1106008 2 + 129 hypothetical protein - none -
fig|6666666.229913.peg.1152 CDS CP016553.1 1108621 1106033 -1 - 2589 Leucyl-tRNA synthetase (EC 6.1.1.4) CBSS-208964.1.peg.3988;
tRNA aminoacylation, Leu
fig|6666666.229913.peg.1153 CDS CP016553.1 1108769 1108599 -2 - 171 hypothetical protein - none -
fig|6666666.229913.peg.1154 CDS CP016553.1 1108857 1108741 -3 - 117 hypothetical protein - none -
fig|6666666.229913.peg.1155 CDS CP016553.1 1109369 1108812 -2 - 558 FIG00696423: hypothetical protein - none -
fig|6666666.229913.peg.1156 CDS CP016553.1 1109690 1109397 -2 - 294 nucleotidyltransferase - none -
fig|6666666.229913.peg.1157 CDS CP016553.1 1110093 1109674 -3 - 420 nucleotidyltransferase substrate binding protein, HI0074 family - none -
fig|6666666.229913.peg.1158 CDS CP016553.1 1111011 1110184 -3 - 828 Bis(5@1-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) - none -
fig|6666666.229913.peg.1159 CDS CP016553.1 1111890 1111027 -3 - 864 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase (EC 2.1.1.182) RNA methylation;
Ribosome biogenesis bacterial
fig|6666666.229913.peg.1160 CDS CP016553.1 1112900 1111968 -2 - 933 Survival protein SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA) (EC 5.2.1.8) Lipopolysaccharide assembly;
Peptidyl-prolyl cis-trans isomerase;
Periplasmic Stress Response
fig|6666666.229913.peg.1161 CDS CP016553.1 1113503 1112967 -2 - 537 Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR De Novo Pyrimidine Synthesis;
De Novo Pyrimidine Synthesis;
pyrimidine conversions
fig|6666666.229913.peg.1162 CDS CP016553.1 1114052 1113642 -2 - 411 Copper metallochaperone, bacterial analog of Cox17 protein Biogenesis of cytochrome c oxidases
fig|6666666.229913.peg.1163 CDS CP016553.1 1114165 1114776 1 + 612 FIG002903: a protein of unknown function perhaps involved in purine metabolism CBSS-354.1.peg.876
fig|6666666.229913.peg.1164 CDS CP016553.1 1114800 1116167 3 + 1368 Adenylosuccinate lyase (EC 4.3.2.2) CBSS-354.1.peg.876;
Purine conversions
fig|6666666.229913.peg.1165 CDS CP016553.1 1116389 1117138 2 + 750 Sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140) - none -
fig|6666666.229913.peg.1166 CDS CP016553.1 1117659 1117252 -3 - 408 Transcriptional regulator, MerR family Cobalt-zinc-cadmium resistance
fig|6666666.229913.peg.1167 CDS CP016553.1 1117797 1118921 3 + 1125 S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) Glutathione-dependent pathway of formaldehyde detoxification
fig|6666666.229913.peg.1168 CDS CP016553.1 1118934 1119764 3 + 831 S-formylglutathione hydrolase (EC 3.1.2.12) Glutathione-dependent pathway of formaldehyde detoxification
fig|6666666.229913.peg.1169 CDS CP016553.1 1120117 1120236 1 + 120 hypothetical protein - none -
fig|6666666.229913.peg.1170 CDS CP016553.1 1121783 1120404 -2 - 1380 Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1) Bacterial signal recognition particle (SRP);
Universal GTPases
fig|6666666.229913.peg.1171 CDS CP016553.1 1121937 1122731 3 + 795 FIG001154: CcsA-related protein - none -
fig|6666666.229913.peg.1172 CDS CP016553.1 1122806 1124068 2 + 1263 Magnesium and cobalt efflux protein CorC CBSS-56780.10.peg.1536;
Copper homeostasis: copper tolerance;
Glycyl-tRNA synthetase containing cluster;
Magnesium transport;
tRNA-methylthiotransferase containing cluster
fig|6666666.229913.peg.1173 CDS CP016553.1 1124243 1124713 2 + 471 Ferric siderophore transport system, biopolymer transport protein ExbB Ton and Tol transport systems
fig|6666666.229913.peg.1174 CDS CP016553.1 1124717 1125163 2 + 447 Biopolymer transport protein ExbD/TolR Ton and Tol transport systems
fig|6666666.229913.peg.1175 CDS CP016553.1 1125173 1125931 2 + 759 Ferric siderophore transport system, periplasmic binding protein TonB Hemin transport system;
Ton and Tol transport systems
fig|6666666.229913.peg.1176 CDS CP016553.1 1126792 1126019 -1 - 774 Zn-dependent protease with chaperone function - none -
fig|6666666.229913.peg.1177 CDS CP016553.1 1127395 1126868 -1 - 528 Inorganic pyrophosphatase (EC 3.6.1.1) Phosphate metabolism
fig|6666666.229913.peg.1178 CDS CP016553.1 1127557 1128801 1 + 1245 Tryptophan-specific transport protein - none -
fig|6666666.229913.peg.1179 CDS CP016553.1 1128825 1129142 3 + 318 hypothetical protein - none -
fig|6666666.229913.peg.1180 CDS CP016553.1 1129126 1129395 1 + 270 hypothetical protein - none -
fig|6666666.229913.peg.1181 CDS CP016553.1 1130484 1129777 -3 - 708 NMN phosphatase (EC 3.1.3.5); Class B acid phosphatase precursor (EC 3.1.3.2) NAD and NADP cofactor biosynthesis global
fig|6666666.229913.peg.1182 CDS CP016553.1 1130699 1131226 2 + 528 ATP-dependent protease HslV (EC 3.4.25.-) Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229913.peg.1183 CDS CP016553.1 1131247 1132578 1 + 1332 ATP-dependent hsl protease ATP-binding subunit HslU Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229913.peg.1184 CDS CP016553.1 1132644 1134227 3 + 1584 Nickel ABC transporter, periplasmic nickel-binding protein NikA (TC 3.A.1.5.3) Transport of Nickel and Cobalt
fig|6666666.229913.peg.1185 CDS CP016553.1 1134293 1135069 2 + 777 Nucleoside ABC transporter, periplasmic nucleoside-binding protein - none -
fig|6666666.229913.peg.1186 CDS CP016553.1 1135087 1135581 1 + 495 Protein yfbU - none -
fig|6666666.229913.peg.1187 CDS CP016553.1 1135656 1135543 -3 - 114 hypothetical protein - none -
fig|6666666.229913.peg.1188 CDS CP016553.1 1136026 1136196 1 + 171 hypothetical protein - none -
fig|6666666.229913.peg.1189 CDS CP016553.1 1136193 1138418 3 + 2226 VgrG-3 protein - none -
fig|6666666.229913.peg.1190 CDS CP016553.1 1138422 1139561 3 + 1140 Probable phospholipase protein - none -
fig|6666666.229913.peg.1191 CDS CP016553.1 1139558 1140625 2 + 1068 Probable phospholipase protein - none -
fig|6666666.229913.peg.1192 CDS CP016553.1 1140721 1141323 1 + 603 miscellaneous; hypothetical/partial homology - none -
fig|6666666.229913.peg.1193 CDS CP016553.1 1141599 1141778 3 + 180 hypothetical protein - none -
fig|6666666.229913.peg.1194 CDS CP016553.1 1141823 1141942 2 + 120 hypothetical protein - none -
fig|6666666.229913.peg.1195 CDS CP016553.1 1142110 1141973 -1 - 138 hypothetical protein - none -
fig|6666666.229913.peg.1196 CDS CP016553.1 1143539 1142709 -2 - 831 5-deoxy-glucuronate isomerase (EC 5.3.1.-) Inositol catabolism
fig|6666666.229913.peg.1197 CDS CP016553.1 1143803 1144606 2 + 804 Inositol-1-monophosphatase (EC 3.1.3.25) - none -
fig|6666666.229913.peg.1198 CDS CP016553.1 1144624 1145967 1 + 1344 putative hexose phosphate transport protein - none -
fig|6666666.229913.peg.1199 CDS CP016553.1 1146810 1146562 -3 - 249 Mobile element protein - none -
fig|6666666.229913.peg.1200 CDS CP016553.1 1146987 1146847 -3 - 141 Mobile element protein - none -
fig|6666666.229913.peg.1201 CDS CP016553.1 1147345 1147070 -1 - 276 Mobile element protein - none -
fig|6666666.229913.peg.1202 CDS CP016553.1 1147736 1147602 -2 - 135 hypothetical protein - none -
fig|6666666.229913.peg.1203 CDS CP016553.1 1148386 1148988 1 + 603 hypothetical protein - none -
fig|6666666.229913.peg.1204 CDS CP016553.1 1153602 1152094 -3 - 1509 Lysyl-tRNA synthetase (class II) (EC 6.1.1.6) tRNA aminoacylation, Lys
fig|6666666.229913.peg.1205 CDS CP016553.1 1154561 1153659 -2 - 903 Peptide chain release factor 2; programmed frameshift-containing Programmed frameshift;
Programmed frameshift;
Translation termination factors bacterial
fig|6666666.229913.peg.1206 CDS CP016553.1 1154841 1154680 -3 - 162 hypothetical protein - none -
fig|6666666.229913.peg.1207 CDS CP016553.1 1154925 1155608 3 + 684 Thiol:disulfide interchange protein DsbC Periplasmic disulfide interchange
fig|6666666.229913.peg.1208 CDS CP016553.1 1155621 1157342 3 + 1722 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) DNA Repair Base Excision;
DNA repair, bacterial RecFOR pathway
fig|6666666.229913.peg.1209 CDS CP016553.1 1157375 1158022 2 + 648 Thiol-disulfide isomerase and thioredoxins - none -
fig|6666666.229913.peg.1210 CDS CP016553.1 1158039 1158731 3 + 693 5@1-methylthioadenosine nucleosidase (EC 3.2.2.16) / S-adenosylhomocysteine nucleosidase (EC 3.2.2.9) Adenosyl nucleosidases;
Adenosyl nucleosidases;
Methionine Biosynthesis;
Methionine Degradation;
Polyamine Metabolism
fig|6666666.229913.peg.1211 CDS CP016553.1 1158910 1159605 1 + 696 Additional periplasmic component NikK of nickel ECF transporter Transport of Nickel and Cobalt
fig|6666666.229913.peg.1212 CDS CP016553.1 1159612 1160115 1 + 504 Additional component NikL of nickel ECF transporter Transport of Nickel and Cobalt
fig|6666666.229913.peg.1213 CDS CP016553.1 1160115 1160768 3 + 654 Substrate-specific component NikM of nickel ECF transporter Transport of Nickel and Cobalt
fig|6666666.229913.peg.1214 CDS CP016553.1 1160765 1161430 2 + 666 ATPase component NikO of energizing module of nickel ECF transporter Transport of Nickel and Cobalt
fig|6666666.229913.peg.1215 CDS CP016553.1 1161427 1162050 1 + 624 ATPase component NikO of energizing module of nickel ECF transporter Transport of Nickel and Cobalt
fig|6666666.229913.peg.1216 CDS CP016553.1 1162129 1162938 1 + 810 [NiFe] hydrogenase nickel incorporation-associated protein HypB G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229913.peg.1217 CDS CP016553.1 1162965 1164077 3 + 1113 [NiFe] hydrogenase metallocenter assembly protein HypD G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229913.peg.1218 CDS CP016553.1 1164077 1165090 2 + 1014 [NiFe] hydrogenase metallocenter assembly protein HypE G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229913.peg.1219 CDS CP016553.1 1165535 1166740 2 + 1206 hypothetical protein - none -
fig|6666666.229913.peg.1220 CDS CP016553.1 1170159 1169344 -3 - 816 Shikimate 5-dehydrogenase I gamma (EC 1.1.1.25) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229913.peg.1221 CDS CP016553.1 1171193 1170309 -2 - 885 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) 5-FCL-like protein;
Methionine Biosynthesis;
One-carbon metabolism by tetrahydropterines;
Serine-glyoxylate cycle
fig|6666666.229913.peg.1222 CDS CP016553.1 1172435 1171368 -2 - 1068 FIG000906: Predicted Permease CBSS-208964.1.peg.3826
fig|6666666.229913.peg.1223 CDS CP016553.1 1173558 1172440 -3 - 1119 FIG000988: Predicted permease CBSS-208964.1.peg.3826
fig|6666666.229913.peg.1224 CDS CP016553.1 1173695 1175185 2 + 1491 Cytosol aminopeptidase PepA (EC 3.4.11.1) Aminopeptidases (EC 3.4.11.-);
CBSS-208964.1.peg.3826;
Dehydrogenase complexes
fig|6666666.229913.peg.1225 CDS CP016553.1 1176391 1175330 -1 - 1062 Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229913.peg.1226 CDS CP016553.1 1177106 1176378 -2 - 729 Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229913.peg.1227 CDS CP016553.1 1177949 1177185 -2 - 765 Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229913.peg.1228 CDS CP016553.1 1178177 1178956 2 + 780 DNA-binding domain of ModE / Molybdate-binding domain of ModE Molybdenum cofactor biosynthesis;
Molybdenum cofactor biosynthesis
fig|6666666.229913.peg.1229 CDS CP016553.1 1179123 1180520 3 + 1398 Arsenic efflux pump protein Arsenic resistance
fig|6666666.229913.peg.1230 CDS CP016553.1 1181183 1180587 -2 - 597 Nucleotidase YfbR, HD superfamily Housecleaning nucleoside triphosphate pyrophosphatases
fig|6666666.229913.peg.1231 CDS CP016553.1 1182220 1181192 -1 - 1029 Outer membrane stress sensor protease DegS Periplasmic Stress Response;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229913.peg.1232 CDS CP016553.1 1183353 1182229 -3 - 1125 Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster;
Riboflavin synthesis cluster
fig|6666666.229913.peg.1233 CDS CP016553.1 1183805 1183353 -2 - 453 Ribonucleotide reductase transcriptional regulator NrdR Ribonucleotide reduction
fig|6666666.229913.peg.1234 CDS CP016553.1 1184983 1183922 -1 - 1062 LSU rRNA 2@1-O-methyl-C2498 methyltransferase RlmM RNA methylation
fig|6666666.229913.peg.1235 CDS CP016553.1 1185908 1185003 -2 - 906 Glycine cleavage system transcriptional activator GcvA LysR-family proteins in Escherichia coli;
Orphan regulatory proteins
fig|6666666.229913.peg.1236 CDS CP016553.1 1186370 1187389 2 + 1020 Branched-chain amino acid aminotransferase (EC 2.6.1.42) Alanine biosynthesis;
Pyruvate Alanine Serine Interconversions
fig|6666666.229913.peg.1237 CDS CP016553.1 1187757 1188497 3 + 741 FIG00698611: hypothetical protein - none -
fig|6666666.229913.peg.1238 CDS CP016553.1 1189588 1188653 -1 - 936 Malate dehydrogenase (EC 1.1.1.37) Serine-glyoxylate cycle;
TCA Cycle
fig|6666666.229913.peg.1239 CDS CP016553.1 1189826 1189704 -2 - 123 hypothetical protein - none -
fig|6666666.229913.peg.1240 CDS CP016553.1 1189851 1190318 3 + 468 Arginine pathway regulatory protein ArgR, repressor of arg regulon Arginine Deiminase Pathway;
Arginine and Ornithine Degradation
fig|6666666.229913.peg.1241 CDS CP016553.1 1190342 1191229 2 + 888 Cell division inhibitor CBSS-83333.1.peg.946;
Persister Cells
fig|6666666.229913.peg.1242 CDS CP016553.1 1191420 1192001 3 + 582 Electron transport complex protein RnfA Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229913.peg.1243 CDS CP016553.1 1192001 1192591 2 + 591 Electron transport complex protein RnfB Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229913.peg.1244 CDS CP016553.1 1192592 1194964 2 + 2373 Electron transport complex protein RnfC Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229913.peg.1245 CDS CP016553.1 1194975 1196054 3 + 1080 Electron transport complex protein RnfD Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229913.peg.1246 CDS CP016553.1 1196061 1196681 3 + 621 Electron transport complex protein RnfG Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229913.peg.1247 CDS CP016553.1 1196674 1197459 1 + 786 Electron transport complex protein RnfE Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229913.peg.1248 CDS CP016553.1 1197606 1198241 3 + 636 Endonuclease III (EC 4.2.99.18) DNA Repair Base Excision
fig|6666666.229913.peg.1249 CDS CP016553.1 1198266 1199639 3 + 1374 sodium-dependent transporter - none -
fig|6666666.229913.peg.1250 CDS CP016553.1 1200818 1200015 -2 - 804 Zinc ABC transporter, inner membrane permease protein ZnuB - none -
fig|6666666.229913.peg.1251 CDS CP016553.1 1201603 1200830 -1 - 774 Zinc ABC transporter, ATP-binding protein ZnuC - none -
fig|6666666.229913.peg.1252 CDS CP016553.1 1201791 1203305 3 + 1515 Cell wall endopeptidase, family M23/M37 Glutaredoxins
fig|6666666.229913.peg.1253 CDS CP016553.1 1203425 1203288 -2 - 138 hypothetical protein - none -
fig|6666666.229913.peg.1254 CDS CP016553.1 1204187 1203429 -2 - 759 Iron(III) dicitrate transport ATP-binding protein FecE (TC 3.A.1.14.1) - none -
fig|6666666.229913.peg.1255 CDS CP016553.1 1205122 1204199 -1 - 924 Ferric vibriobactin, enterobactin transport system, permease protein VctG (TC 3.A.1.14.6) - none -
fig|6666666.229913.peg.1256 CDS CP016553.1 1206095 1205130 -2 - 966 Ferric anguibactin transport system permease protein fatD - none -
fig|6666666.229913.peg.1257 CDS CP016553.1 1207054 1206155 -1 - 900 Iron compound ABC uptake transporter substrate-binding protein PiuA - none -
fig|6666666.229913.peg.1258 CDS CP016553.1 1207284 1209260 3 + 1977 2@1,3@1-cyclic-nucleotide 2@1-phosphodiesterase (EC 3.1.4.16) Purine conversions;
pyrimidine conversions
fig|6666666.229913.peg.1259 CDS CP016553.1 1210373 1209456 -2 - 918 formate dehydrogenase formation protein FdhE Formate hydrogenase
fig|6666666.229913.peg.1260 CDS CP016553.1 1210745 1211143 2 + 399 Protein co-occuring with molybdenum cofactor biosynthesis protein B Molybdenum cofactor biosynthesis
fig|6666666.229913.peg.1261 CDS CP016553.1 1211298 1211543 3 + 246 Two-component system response regulator QseB Orphan regulatory proteins
fig|6666666.229913.peg.1262 CDS CP016553.1 1211512 1211958 1 + 447 Two-component system response regulator QseB Orphan regulatory proteins
fig|6666666.229913.peg.1263 CDS CP016553.1 1211945 1212355 2 + 411 Sensory histidine kinase QseC Orphan regulatory proteins
fig|6666666.229913.peg.1264 CDS CP016553.1 1212380 1213321 2 + 942 Sensory histidine kinase QseC Orphan regulatory proteins
fig|6666666.229913.peg.1265 CDS CP016553.1 1215216 1213447 -3 - 1770 Gamma-glutamyltranspeptidase (EC 2.3.2.2) Glutathione: Biosynthesis and gamma-glutamyl cycle
fig|6666666.229913.peg.1266 CDS CP016553.1 1215694 1215449 -1 - 246 FIG00696862: hypothetical protein - none -
fig|6666666.229913.peg.1267 CDS CP016553.1 1217222 1215885 -2 - 1338 Argininosuccinate synthase (EC 6.3.4.5) - none -
fig|6666666.229913.peg.1268 CDS CP016553.1 1218137 1217310 -2 - 828 Nucleoside-diphosphate-sugar epimerases - none -
fig|6666666.229913.peg.1269 CDS CP016553.1 1218424 1218308 -1 - 117 hypothetical protein - none -
fig|6666666.229913.peg.1270 CDS CP016553.1 1218494 1220077 2 + 1584 Peptide chain release factor 3 Translation termination factors bacterial
fig|6666666.229913.peg.1271 CDS CP016553.1 1220264 1220614 2 + 351 YPPCP.09C homologue - none -
fig|6666666.229913.peg.1272 CDS CP016553.1 1220611 1220910 1 + 300 Putative transcriptional regulator - none -
fig|6666666.229913.peg.1273 CDS CP016553.1 1223879 1220946 -2 - 2934 Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42) Ammonia assimilation;
CBSS-316057.3.peg.3521
fig|6666666.229913.peg.1274 CDS CP016553.1 1224079 1226544 1 + 2466 CRISPR-associated helicase Cas3 CRISPRs
fig|6666666.229913.peg.1275 CDS CP016553.1 1226553 1227332 3 + 780 CRISPR-associated protein, Cas5d family CRISPRs
fig|6666666.229913.peg.1276 CDS CP016553.1 1227329 1229362 2 + 2034 CRISPR-associated protein, Csd1 family CRISPRs
fig|6666666.229913.peg.1277 CDS CP016553.1 1229384 1230277 2 + 894 CRISPR-associated protein, Csd2 family CRISPRs
fig|6666666.229913.peg.1278 CDS CP016553.1 1230453 1231100 3 + 648 CRISPR-associated RecB family exonuclease Cas4 / CRISPR-associated protein Cas1 CRISPRs
fig|6666666.229913.peg.1279 CDS CP016553.1 1231163 1233007 2 + 1845 hypothetical protein - none -
fig|6666666.229913.peg.1280 CDS CP016553.1 1233055 1234068 1 + 1014 CRISPR-associated protein Cas1 CRISPRs
fig|6666666.229913.peg.1281 CDS CP016553.1 1234072 1234365 1 + 294 CRISPR-associated protein Cas2 CRISPRs
fig|6666666.229913.peg.1282 CDS CP016553.1 1237338 1235062 -3 - 2277 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) Methionine Biosynthesis
fig|6666666.229913.peg.1283 CDS CP016553.1 1237629 1238561 3 + 933 Transcriptional activator MetR LysR-family proteins in Escherichia coli;
LysR-family proteins in Salmonella enterica Typhimurium;
Methionine Biosynthesis
fig|6666666.229913.peg.1284 CDS CP016553.1 1238566 1239294 1 + 729 Branched-chain amino acid transport protein AzlC - none -
fig|6666666.229913.peg.1285 CDS CP016553.1 1239295 1239627 1 + 333 Branched-chain amino acid transport protein azlD - none -
fig|6666666.229913.peg.1286 CDS CP016553.1 1242468 1239694 -3 - 2775 Probable zinc protease pqqL (EC 3.4.99.-) - none -
fig|6666666.229913.peg.1287 CDS CP016553.1 1244912 1242546 -2 - 2367 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229913.peg.1288 CDS CP016553.1 1245205 1246098 1 + 894 Membrane protein LAPB - none -
fig|6666666.229913.peg.1289 CDS CP016553.1 1246091 1246768 2 + 678 Cytidylate kinase (EC 2.7.4.25) pyrimidine conversions
fig|6666666.229913.peg.1290 CDS CP016553.1 1246866 1248512 3 + 1647 SSU ribosomal protein S1p Cell division-ribosomal stress proteins cluster;
Ribosome SSU bacterial
fig|6666666.229913.peg.1291 CDS CP016553.1 1248574 1248861 1 + 288 Integration host factor beta subunit DNA structural proteins, bacterial
fig|6666666.229913.peg.1292 CDS CP016553.1 1248960 1249256 3 + 297 Inner membrane protein yciS - none -
fig|6666666.229913.peg.1293 CDS CP016553.1 1249256 1250446 2 + 1191 Heat shock (predicted periplasmic) protein YciM, precursor Osmotic stress cluster
fig|6666666.229913.peg.1294 CDS CP016553.1 1250476 1251168 1 + 693 Orotidine 5@1-phosphate decarboxylase (EC 4.1.1.23) De Novo Pyrimidine Synthesis;
Riboflavin synthesis cluster
fig|6666666.229913.peg.1295 CDS CP016553.1 1251174 1251491 3 + 318 Translation initiation factor SUI1-related protein Translation initiation factors bacterial
fig|6666666.229913.peg.1296 CDS CP016553.1 1251875 1251525 -2 - 351 FIG00782386: hypothetical protein - none -
fig|6666666.229913.peg.1297 CDS CP016553.1 1254606 1251943 -3 - 2664 DNA gyrase subunit A (EC 5.99.1.3) Cell Division Subsystem including YidCD;
DNA gyrase subunits;
DNA replication cluster 1;
DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.229913.peg.1298 CDS CP016553.1 1255214 1254774 -2 - 441 Ferric uptake regulation protein FUR Bacterial RNA-metabolizing Zn-dependent hydrolases;
Oxidative stress
fig|6666666.229913.peg.1299 CDS CP016553.1 1255757 1255233 -2 - 525 Flavodoxin 1 Flavodoxin
fig|6666666.229913.peg.1300 CDS CP016553.1 1256977 1256177 -1 - 801 Esterase ybfF (EC 3.1.-.-) - none -
fig|6666666.229913.peg.1301 CDS CP016553.1 1257064 1257681 1 + 618 SeqA protein, negative modulator of initiation of replication - none -
fig|6666666.229913.peg.1302 CDS CP016553.1 1257687 1259102 3 + 1416 O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229913.peg.1303 CDS CP016553.1 1259111 1262434 2 + 3324 Potassium efflux system KefA protein / Small-conductance mechanosensitive channel Potassium homeostasis
fig|6666666.229913.peg.1304 CDS CP016553.1 1262456 1263529 2 + 1074 Chorismate synthase (EC 4.2.3.5) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229913.peg.1305 CDS CP016553.1 1263550 1264422 1 + 873 Murein endopeptidase - none -
fig|6666666.229913.peg.1306 CDS CP016553.1 1264426 1265193 1 + 768 Putative membrane protein YfcA - none -
fig|6666666.229913.peg.1307 CDS CP016553.1 1265309 1266265 2 + 957 Lipid A biosynthesis (KDO) 2-(lauroyl)-lipid IVA acyltransferase (EC 2.3.1.-) KDO2-Lipid A biosynthesis
fig|6666666.229913.peg.1308 CDS CP016553.1 1266287 1266898 2 + 612 Adenine phosphoribosyltransferase (EC 2.4.2.7) Purine conversions;
cAMP signaling in bacteria
fig|6666666.229913.peg.1309 CDS CP016553.1 1266931 1268976 1 + 2046 DNA polymerase III subunits gamma and tau (EC 2.7.7.7) DNA processing cluster
fig|6666666.229913.peg.1310 CDS CP016553.1 1268979 1269869 3 + 891 hypothetical protein - none -
fig|6666666.229913.peg.1311 CDS CP016553.1 1270013 1270966 2 + 954 Glycosyltransferase - none -
fig|6666666.229913.peg.1312 CDS CP016553.1 1270969 1271595 1 + 627 hypothetical protein - none -
fig|6666666.229913.peg.1313 CDS CP016553.1 1271643 1272515 3 + 873 hypothetical protein - none -
fig|6666666.229913.peg.1314 CDS CP016553.1 1272910 1272557 -1 - 354 Putative translation initiation inhibitor, yjgF family - none -
fig|6666666.229913.peg.1315 CDS CP016553.1 1273051 1273728 1 + 678 FIG00904286: hypothetical protein - none -
fig|6666666.229913.peg.1316 CDS CP016553.1 1273734 1274444 3 + 711 hypothetical protein - none -
fig|6666666.229913.peg.1317 CDS CP016553.1 1276111 1274579 -1 - 1533 Na+/H+ antiporter - none -
fig|6666666.229913.peg.1318 CDS CP016553.1 1276552 1276950 1 + 399 DNA-binding protein H-NS - none -
fig|6666666.229913.peg.1319 CDS CP016553.1 1276987 1277856 1 + 870 Formyltetrahydrofolate deformylase (EC 3.5.1.10) 5-FCL-like protein;
One-carbon metabolism by tetrahydropterines
fig|6666666.229913.peg.1320 CDS CP016553.1 1277991 1278620 3 + 630 Cell division protein FtsJ / Ribosomal RNA large subunit methyltransferase E (EC 2.1.1.-) ## LSU rRNA Um2552 Bacterial Cell Division;
RNA methylation
fig|6666666.229913.peg.1321 CDS CP016553.1 1278727 1280679 1 + 1953 Cell division protein FtsH (EC 3.4.24.-) Bacterial Cell Division;
Cell division-ribosomal stress proteins cluster;
Folate biosynthesis cluster
fig|6666666.229913.peg.1322 CDS CP016553.1 1280875 1281312 1 + 438 Putative transporting ATPase - none -
fig|6666666.229913.peg.1323 CDS CP016553.1 1282496 1281438 -2 - 1059 Ferric iron ABC transporter, ATP-binding protein Iron acquisition in Streptococcus
fig|6666666.229913.peg.1324 CDS CP016553.1 1284212 1282518 -2 - 1695 Ferric iron ABC transporter, permease protein Iron acquisition in Streptococcus
fig|6666666.229913.peg.1325 CDS CP016553.1 1285294 1284215 -1 - 1080 Thiamin ABC transporter, ATPase component Thiamin biosynthesis
fig|6666666.229913.peg.1326 CDS CP016553.1 1286314 1285316 -1 - 999 ABC-type Fe3+ transport system, periplasmic component - none -
fig|6666666.229913.peg.1327 CDS CP016553.1 1286688 1287809 3 + 1122 Phosphoglycerate transport regulatory protein PgtC Phosphoglycerate transport system
fig|6666666.229913.peg.1328 CDS CP016553.1 1288599 1287838 -3 - 762 Mobile element protein - none -
fig|6666666.229913.peg.1329 CDS CP016553.1 1288814 1288641 -2 - 174 hypothetical protein - none -
fig|6666666.229913.peg.1330 CDS CP016553.1 1289046 1289195 3 + 150 Phosphoglycerate transport regulatory protein PgtC Phosphoglycerate transport system
fig|6666666.229913.peg.1331 CDS CP016553.1 1289192 1290532 2 + 1341 Phosphoglycerate transport system sensor protein PgtB (EC 2.7.3.-) Phosphoglycerate transport system
fig|6666666.229913.peg.1332 CDS CP016553.1 1290489 1291085 3 + 597 Phosphoglycerate transport system sensor protein PgtB (EC 2.7.3.-) Phosphoglycerate transport system
fig|6666666.229913.peg.1333 CDS CP016553.1 1291078 1292328 1 + 1251 Phosphoglycerate transport system transcriptional regulatory protein PgtA Phosphoglycerate transport system
fig|6666666.229913.peg.1334 CDS CP016553.1 1293219 1292380 -3 - 840 NADPH dependent preQ0 reductase (EC 1.7.1.13) - none -
fig|6666666.229913.peg.1335 CDS CP016553.1 1294010 1293228 -2 - 783 Zn-ribbon-containing, possibly nucleic-acid-binding protein - none -
fig|6666666.229913.peg.1336 CDS CP016553.1 1294118 1294432 2 + 315 Hypothetical protein YqcC (clustered with tRNA pseudouridine synthase C) - none -
fig|6666666.229913.peg.1337 CDS CP016553.1 1294429 1295142 1 + 714 tRNA pseudouridine synthase C (EC 4.2.1.70) RNA pseudouridine syntheses;
tRNA modification Bacteria
fig|6666666.229913.peg.1338 CDS CP016553.1 1295193 1295357 3 + 165 hypothetical protein - none -
fig|6666666.229913.peg.1339 CDS CP016553.1 1295548 1295757 1 + 210 Cold shock protein CspD Cold shock, CspA family of proteins
fig|6666666.229913.peg.1340 CDS CP016553.1 1296270 1295824 -3 - 447 Macrodomain Ter protein YcbG - none -
fig|6666666.229913.peg.1341 CDS CP016553.1 1296417 1298201 3 + 1785 ATP-dependent protease La (EC 3.4.21.53) Type II Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229913.peg.1342 CDS CP016553.1 1298344 1298874 1 + 531 3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabA form (EC 4.2.1.59) Fatty Acid Biosynthesis FASII
fig|6666666.229913.peg.1343 CDS CP016553.1 1299299 1299655 2 + 357 DsrE-related protein - none -
fig|6666666.229913.peg.1344 CDS CP016553.1 1299687 1303391 3 + 3705 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) DNA repair, bacterial RecBCD pathway
fig|6666666.229913.peg.1345 CDS CP016553.1 1303391 1305370 2 + 1980 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) DNA repair, bacterial RecBCD pathway
fig|6666666.229913.peg.1346 CDS CP016553.1 1305383 1305979 2 + 597 hypothetical protein - none -
fig|6666666.229913.peg.1347 CDS CP016553.1 1306221 1306649 3 + 429 LSU ribosomal protein L13p (L13Ae) - none -
fig|6666666.229913.peg.1348 CDS CP016553.1 1306666 1307058 1 + 393 SSU ribosomal protein S9p (S16e) Ribosome SSU bacterial
fig|6666666.229913.peg.1349 CDS CP016553.1 1307219 1308004 2 + 786 tRNA pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses;
tRNA modification Archaea;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229913.peg.1350 CDS CP016553.1 1308163 1308017 -1 - 147 RelE/StbE replicon stabilization toxin Toxin-antitoxin replicon stabilization systems
fig|6666666.229913.peg.1351 CDS CP016553.1 1308299 1308147 -2 - 153 StbE replicon stabilization toxin - none -
fig|6666666.229913.peg.1352 CDS CP016553.1 1308550 1308296 -1 - 255 RelB/StbD replicon stabilization protein (antitoxin to RelE/StbE) Toxin-antitoxin replicon stabilization systems
fig|6666666.229913.peg.1353 CDS CP016553.1 1310222 1308765 -2 - 1458 2-oxoglutarate/malate translocator - none -
fig|6666666.229913.peg.1354 CDS CP016553.1 1310452 1311231 1 + 780 Protein of unknown function DUF419 - none -
fig|6666666.229913.peg.1355 CDS CP016553.1 1313782 1311302 -1 - 2481 Trimethylamine-N-oxide reductase (EC 1.6.6.9) - none -
fig|6666666.229913.peg.1356 CDS CP016553.1 1314943 1313843 -1 - 1101 Cytochrome c-type protein TorY - none -
fig|6666666.229913.peg.1357 CDS CP016553.1 1315249 1316706 1 + 1458 tRNA S(4)U 4-thiouridine synthase (former ThiI) / Rhodanese-like domain required for thiamine synthesis Thiamin biosynthesis;
Thiamin biosynthesis;
tRNA modification Archaea;
tRNA modification Archaea;
tRNA modification Bacteria;
tRNA modification Bacteria
fig|6666666.229913.peg.1358 CDS CP016553.1 1317494 1316790 -2 - 705 Alpha-aspartyl dipeptidase Peptidase E (EC 3.4.13.21) Dipeptidases (EC 3.4.13.-)
fig|6666666.229913.peg.1359 CDS CP016553.1 1317678 1318670 3 + 993 Putative DNA-binding protein in cluster with Type I restriction-modification system Restriction-Modification System
fig|6666666.229913.peg.1360 CDS CP016553.1 1319464 1318667 -1 - 798 Mobile element protein - none -
fig|6666666.229913.peg.1361 CDS CP016553.1 1319692 1319979 1 + 288 hypothetical protein - none -
fig|6666666.229913.peg.1362 CDS CP016553.1 1320016 1321029 1 + 1014 Mobile element protein - none -
fig|6666666.229913.peg.1363 CDS CP016553.1 1321052 1321231 2 + 180 FIG050068: DNA-binding protein - none -
fig|6666666.229913.peg.1364 CDS CP016553.1 1322432 1321341 -2 - 1092 Integrase - none -
fig|6666666.229913.peg.1365 CDS CP016553.1 1322968 1323327 1 + 360 Antiholin-like protein LrgA Murein hydrolase regulation and cell death
fig|6666666.229913.peg.1366 CDS CP016553.1 1323327 1324019 3 + 693 LrgA-associated membrane protein LrgB Murein hydrolase regulation and cell death
fig|6666666.229913.peg.1367 CDS CP016553.1 1324021 1325373 1 + 1353 Putative dNTP triphosphohydrolase, associated with nucleotidase YfbR Purine conversions;
dNTP triphosphohydrolase protein family
fig|6666666.229913.peg.1368 CDS CP016553.1 1325703 1325410 -3 - 294 FIG045511: hypothetical antitoxin (to FIG022160: hypothetical toxin) - none -
fig|6666666.229913.peg.1369 CDS CP016553.1 1326007 1325705 -1 - 303 FIG022160: hypothetical toxin - none -
fig|6666666.229913.peg.1370 CDS CP016553.1 1326166 1326047 -1 - 120 hypothetical protein - none -
fig|6666666.229913.peg.1371 CDS CP016553.1 1326160 1328106 1 + 1947 ABC transporter ATP-binding protein - none -
fig|6666666.229913.peg.1372 CDS CP016553.1 1328147 1329550 2 + 1404 hypothetical protein - none -
fig|6666666.229913.peg.1373 CDS CP016553.1 1329901 1330650 1 + 750 hypothetical protein - none -
fig|6666666.229913.peg.1374 CDS CP016553.1 1331109 1331678 3 + 570 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) Glycogen metabolism;
Glycogen metabolism cluster;
Maltose and Maltodextrin Utilization;
Maltose utilization cluster
fig|6666666.229913.peg.1375 CDS CP016553.1 1331666 1333861 2 + 2196 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) Glycogen metabolism;
Glycogen metabolism cluster
fig|6666666.229913.peg.1376 CDS CP016553.1 1333858 1335867 1 + 2010 Glycogen debranching enzyme (EC 3.2.1.-) Glycogen metabolism;
Glycogen metabolism cluster
fig|6666666.229913.peg.1377 CDS CP016553.1 1335894 1337204 3 + 1311 Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27) Glycogen metabolism;
Glycogen metabolism cluster
fig|6666666.229913.peg.1378 CDS CP016553.1 1337185 1337322 1 + 138 Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27) Glycogen metabolism;
Glycogen metabolism cluster
fig|6666666.229913.peg.1379 CDS CP016553.1 1337406 1338845 3 + 1440 Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21) Glycogen metabolism;
Glycogen metabolism cluster
fig|6666666.229913.peg.1380 CDS CP016553.1 1338969 1341434 3 + 2466 Glycogen phosphorylase (EC 2.4.1.1) Glycogen metabolism;
Glycogen metabolism cluster;
Maltose and Maltodextrin Utilization
fig|6666666.229913.peg.1381 CDS CP016553.1 1342158 1341553 -3 - 606 DedA protein DedA family of inner membrane proteins;
Uptake of selenate and selenite
fig|6666666.229913.peg.1382 CDS CP016553.1 1342372 1342659 1 + 288 LSU ribosomal protein L25p Transcription repair cluster
fig|6666666.229913.peg.1383 CDS CP016553.1 1342808 1343410 2 + 603 lipoprotein HlpB - none -
fig|6666666.229913.peg.1384 CDS CP016553.1 1343585 1344463 2 + 879 Murein-DD-endopeptidase (EC 3.4.99.-) Peptidoglycan Biosynthesis
fig|6666666.229913.peg.1385 CDS CP016553.1 1344643 1345971 1 + 1329 Chromosome partition protein MukF DNA structural proteins, bacterial;
MukBEF Chromosome Condensation
fig|6666666.229913.peg.1386 CDS CP016553.1 1346143 1349604 1 + 3462 Putative 2-acylglycerophosphoethanolamine acyltransferase / acyl-acyl carrier protein synthetase (EC 6.2.1.20) - none -
fig|6666666.229913.peg.1387 CDS CP016553.1 1349625 1350365 3 + 741 Chromosome partition protein MukE DNA structural proteins, bacterial;
MukBEF Chromosome Condensation
fig|6666666.229913.peg.1388 CDS CP016553.1 1350365 1354855 2 + 4491 Chromosome partition protein MukB DNA structural proteins, bacterial;
MukBEF Chromosome Condensation
fig|6666666.229913.peg.1389 CDS CP016553.1 1354932 1355804 3 + 873 Integral membrane protein - none -
fig|6666666.229913.peg.1390 CDS CP016553.1 1355816 1357243 2 + 1428 Exodeoxyribonuclease I (EC 3.1.11.1) DNA Repair Base Excision
fig|6666666.229913.peg.1391 CDS CP016553.1 1358134 1358619 1 + 486 Ferritin-like protein 2 - none -
fig|6666666.229913.peg.1392 CDS CP016553.1 1358635 1359132 1 + 498 Ferritin-like protein 2 - none -
fig|6666666.229913.peg.1393 CDS CP016553.1 1359364 1359194 -1 - 171 hypothetical protein - none -
fig|6666666.229913.peg.1394 CDS CP016553.1 1359473 1360246 2 + 774 Fumarate and nitrate reduction regulatory protein Oxidative stress
fig|6666666.229913.peg.1395 CDS CP016553.1 1360364 1361296 2 + 933 Universal stress protein E Universal stress protein family
fig|6666666.229913.peg.1396 CDS CP016553.1 1361423 1362259 2 + 837 ABC-type Co2+ transport system, periplasmic component - none -
fig|6666666.229913.peg.1397 CDS CP016553.1 1364950 1362344 -1 - 2607 DNA topoisomerase I (EC 5.99.1.2) CBSS-272943.3.peg.1367;
Conserved gene cluster associated with Met-tRNA formyltransferase;
DNA topoisomerases, Type I, ATP-independent
fig|6666666.229913.peg.1398 CDS CP016553.1 1366024 1365188 -1 - 837 COG0613, Predicted metal-dependent phosphoesterases (PHP family) YrdC-YciO-Sua5 protein family;
tRNA modification Bacteria
fig|6666666.229913.peg.1399 CDS CP016553.1 1367057 1366038 -2 - 1020 Dihydroorotate dehydrogenase (EC 1.3.3.1) De Novo Pyrimidine Synthesis
fig|6666666.229913.peg.1400 CDS CP016553.1 1369739 1367130 -2 - 2610 Membrane alanine aminopeptidase N (EC 3.4.11.2) Aminopeptidases (EC 3.4.11.-)
fig|6666666.229913.peg.1401 CDS CP016553.1 1370161 1371351 1 + 1191 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229913.peg.1402 CDS CP016553.1 1371965 1371402 -2 - 564 Transcriptional regulator, TetR family - none -
fig|6666666.229913.peg.1403 CDS CP016553.1 1372113 1373093 3 + 981 HlyD family secretion protein - none -
fig|6666666.229913.peg.1404 CDS CP016553.1 1373096 1375840 2 + 2745 ABC-type multidrug transport system, permease component - none -
fig|6666666.229913.peg.1405 CDS CP016553.1 1375842 1376969 3 + 1128 ABC-type multidrug transport system, permease component - none -
fig|6666666.229913.peg.1406 CDS CP016553.1 1376989 1378407 1 + 1419 Outer membrane component of tripartite multidrug resistance system Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria
fig|6666666.229913.peg.1407 CDS CP016553.1 1378417 1378533 1 + 117 hypothetical protein - none -
fig|6666666.229913.peg.1408 CDS CP016553.1 1378574 1378927 2 + 354 hypothetical protein - none -
fig|6666666.229913.peg.1409 CDS CP016553.1 1379582 1379094 -2 - 489 Probable lipoprotein nlpC precursor - none -
fig|6666666.229913.peg.1410 CDS CP016553.1 1379930 1379634 -2 - 297 Integration host factor alpha subunit DNA structural proteins, bacterial
fig|6666666.229913.peg.1411 CDS CP016553.1 1382324 1379934 -2 - 2391 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) tRNA aminoacylation, Phe
fig|6666666.229913.peg.1412 CDS CP016553.1 1383333 1382344 -3 - 990 Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20) tRNA aminoacylation, Phe
fig|6666666.229913.peg.1413 CDS CP016553.1 1384548 1383673 -3 - 876 Probable protease htpX homolog - none -
fig|6666666.229913.peg.1414 CDS CP016553.1 1384585 1384734 1 + 150 hypothetical protein - none -
fig|6666666.229913.peg.1415 CDS CP016553.1 1385231 1386166 2 + 936 Arabinose 5-phosphate isomerase (EC 5.3.1.13) KDO2-Lipid A biosynthesis
fig|6666666.229913.peg.1416 CDS CP016553.1 1386166 1386720 1 + 555 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC 3.1.3.45) KDO2-Lipid A biosynthesis
fig|6666666.229913.peg.1417 CDS CP016553.1 1386886 1388433 1 + 1548 Anthranilate synthase, aminase component (EC 4.1.3.27) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229913.peg.1418 CDS CP016553.1 1388444 1389034 2 + 591 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229913.peg.1419 CDS CP016553.1 1389108 1389500 3 + 393 putative - none -
fig|6666666.229913.peg.1420 CDS CP016553.1 1389512 1390513 2 + 1002 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) Auxin biosynthesis;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229913.peg.1421 CDS CP016553.1 1390608 1390886 3 + 279 HigB toxin protein Toxin-antitoxin replicon stabilization systems
fig|6666666.229913.peg.1422 CDS CP016553.1 1390896 1391174 3 + 279 HigA protein (antitoxin to HigB) Toxin-antitoxin replicon stabilization systems
fig|6666666.229913.peg.1423 CDS CP016553.1 1391183 1392613 2 + 1431 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24) Auxin biosynthesis;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis;
Tryptophan synthesis
fig|6666666.229913.peg.1424 CDS CP016553.1 1392876 1393037 3 + 162 Hydrogenase-2 operon protein hybE - none -
fig|6666666.229913.peg.1425 CDS CP016553.1 1393067 1393342 2 + 276 [NiFe] hydrogenase metallocenter assembly protein HybG G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229913.peg.1426 CDS CP016553.1 1394367 1394633 3 + 267 Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3) Na+ translocating decarboxylases and related biotin-dependent enzymes;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229913.peg.1427 CDS CP016553.1 1394649 1396445 3 + 1797 Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3) Na+ translocating decarboxylases and related biotin-dependent enzymes;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229913.peg.1428 CDS CP016553.1 1396456 1397760 1 + 1305 Oxaloacetate decarboxylase beta chain (EC 4.1.1.3) Na+ translocating decarboxylases and related biotin-dependent enzymes;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229913.peg.1429 CDS CP016553.1 1397772 1397969 3 + 198 hypothetical protein - none -
fig|6666666.229913.peg.1430 CDS CP016553.1 1400560 1398164 -1 - 2397 Outer membrane receptor for lactoferrin or transferrin, TonB-dependent protein A - none -
fig|6666666.229913.peg.1431 CDS CP016553.1 1401326 1401114 -2 - 213 hypothetical protein - none -
fig|6666666.229913.peg.1432 CDS CP016553.1 1401327 1402064 3 + 738 3-hydroxypropionate dehydrogenase (EC 1.1.1.298) - none -
fig|6666666.229913.peg.1433 CDS CP016553.1 1402074 1403267 3 + 1194 Tryptophan synthase beta chain (EC 4.2.1.20) Auxin biosynthesis;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229913.peg.1434 CDS CP016553.1 1403270 1404076 2 + 807 Tryptophan synthase alpha chain (EC 4.2.1.20) Auxin biosynthesis;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229913.peg.1435 CDS CP016553.1 1404352 1406037 1 + 1686 Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) Ribonucleotide reduction
fig|6666666.229913.peg.1436 CDS CP016553.1 1406168 1407157 2 + 990 Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) Ribonucleotide reduction
fig|6666666.229913.peg.1437 CDS CP016553.1 1407443 1408849 2 + 1407 Pyruvate kinase (EC 2.7.1.40) Entner-Doudoroff Pathway;
Glycerate metabolism;
Glycolysis and Gluconeogenesis;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229913.peg.1438 CDS CP016553.1 1409255 1408953 -2 - 303 Autoinducer 2 (AI-2) modifying protein LsrG Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229913.peg.1439 CDS CP016553.1 1410166 1409288 -1 - 879 Autoinducer 2 (AI-2) aldolase LsrF (EC 4.2.1.-) Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229913.peg.1440 CDS CP016553.1 1411282 1410185 -1 - 1098 Autoinducer 2 (AI-2) ABC transport system, periplasmic AI-2 binding protein LsrB Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229913.peg.1441 CDS CP016553.1 1412311 1411307 -1 - 1005 Autoinducer 2 (AI-2) ABC transport system, membrane channel protein LsrD Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229913.peg.1442 CDS CP016553.1 1413356 1412325 -2 - 1032 Autoinducer 2 (AI-2) ABC transport system, membrane channel protein LsrC Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229913.peg.1443 CDS CP016553.1 1414882 1413365 -1 - 1518 Autoinducer 2 (AI-2) ABC transport system, fused AI2 transporter subunits and ATP-binding component Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229913.peg.1444 CDS CP016553.1 1415126 1416091 2 + 966 LsrR, transcriptional repressor of lsr operon Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229913.peg.1445 CDS CP016553.1 1416140 1417714 2 + 1575 Autoinducer 2 (AI-2) kinase LsrK (EC 2.7.1.-) Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229913.peg.1446 CDS CP016553.1 1418532 1417804 -3 - 729 Dethiobiotin synthetase (EC 6.3.3.3) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229913.peg.1447 CDS CP016553.1 1419838 1418609 -1 - 1230 Mlc, transcriptional repressor of MalT (the transcriptional activator of maltose regulon) and manXYZ operon Maltose and Maltodextrin Utilization
fig|6666666.229913.peg.1448 CDS CP016553.1 1420034 1421437 2 + 1404 Asparaginyl-tRNA synthetase (EC 6.1.1.22) tRNA aminoacylation, Asp and Asn;
tRNA modification Archaea
fig|6666666.229913.peg.1449 CDS CP016553.1 1422061 1421600 -1 - 462 Stringent starvation protein B Carbon Starvation
fig|6666666.229913.peg.1450 CDS CP016553.1 1422714 1422073 -3 - 642 Stringent starvation protein A Carbon Starvation
fig|6666666.229913.peg.1451 CDS CP016553.1 1423369 1422914 -1 - 456 Molybdenum cofactor biosynthesis protein MoaE Molybdenum cofactor biosynthesis;
ar-104-EC Molybdenum cofactor biosynthesis moaABCDE
fig|6666666.229913.peg.1452 CDS CP016553.1 1423615 1423370 -1 - 246 Molybdenum cofactor biosynthesis protein MoaD Molybdenum cofactor biosynthesis;
ar-104-EC Molybdenum cofactor biosynthesis moaABCDE
fig|6666666.229913.peg.1453 CDS CP016553.1 1424097 1423615 -3 - 483 Molybdenum cofactor biosynthesis protein MoaC Molybdenum cofactor biosynthesis;
ar-104-EC Molybdenum cofactor biosynthesis moaABCDE
fig|6666666.229913.peg.1454 CDS CP016553.1 1425163 1424150 -1 - 1014 Molybdenum cofactor biosynthesis protein MoaA Molybdenum cofactor biosynthesis;
ar-104-EC Molybdenum cofactor biosynthesis moaABCDE
fig|6666666.229913.peg.1455 CDS CP016553.1 1425521 1426489 2 + 969 FIG002813: LPPG:FO 2-phospho-L-lactate transferase like, CofD-like - none -
fig|6666666.229913.peg.1456 CDS CP016553.1 1428309 1427545 -3 - 765 Mobile element protein - none -
fig|6666666.229913.peg.1457 CDS CP016553.1 1428609 1428346 -3 - 264 Phage tail fibers Phage tail fiber proteins
fig|6666666.229913.peg.1458 CDS CP016553.1 1428809 1429504 2 + 696 hypothetical protein - none -
fig|6666666.229913.peg.1459 CDS CP016553.1 1429639 1430703 1 + 1065 Vitamin B12 ABC transporter, permease component BtuC - none -
fig|6666666.229913.peg.1460 CDS CP016553.1 1430703 1431497 3 + 795 Glutathione synthetase (EC 6.3.2.3) Cluster containing Glutathione synthetase;
Glutathione: Biosynthesis and gamma-glutamyl cycle;
Heat shock dnaK gene cluster extended
fig|6666666.229913.peg.1461 CDS CP016553.1 1431510 1432556 3 + 1047 FIG00362752: hypothetical protein - none -
fig|6666666.229913.peg.1462 CDS CP016553.1 1432636 1432803 1 + 168 Molybdate-binding domain of ModE Molybdenum cofactor biosynthesis
fig|6666666.229913.peg.1463 CDS CP016553.1 1435019 1432923 -2 - 2097 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins Ton and Tol transport systems
fig|6666666.229913.peg.1464 CDS CP016553.1 1435318 1435016 -1 - 303 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins Ton and Tol transport systems
fig|6666666.229913.peg.1465 CDS CP016553.1 1436162 1435413 -2 - 750 ABC transporter ATP-binding protein - none -
fig|6666666.229913.peg.1466 CDS CP016553.1 1437172 1436159 -1 - 1014 Vitamin B12 ABC transporter, permease component BtuC - none -
fig|6666666.229913.peg.1467 CDS CP016553.1 1438173 1437172 -3 - 1002 ABC transporter, solute-binding protein - none -
fig|6666666.229913.peg.1468 CDS CP016553.1 1438384 1438881 1 + 498 FIG00697418: hypothetical protein - none -
fig|6666666.229913.peg.1469 CDS CP016553.1 1438883 1440853 2 + 1971 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins Ton and Tol transport systems
fig|6666666.229913.peg.1470 CDS CP016553.1 1441359 1440943 -3 - 417 putative membrane protein - none -
fig|6666666.229913.peg.1471 CDS CP016553.1 1441500 1442465 3 + 966 tRNA(Cytosine32)-2-thiocytidine synthetase CBSS-326442.4.peg.1852;
tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229913.peg.1472 CDS CP016553.1 1442482 1442982 1 + 501 Micrococcal nuclease (thermonuclease) homologs - none -
fig|6666666.229913.peg.1473 CDS CP016553.1 1442988 1444187 3 + 1200 Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA Alanine biosynthesis;
mnm5U34 biosynthesis bacteria;
tRNA modification Archaea
fig|6666666.229913.peg.1474 CDS CP016553.1 1444184 1444564 2 + 381 Cysteine desulfurase CsdA-CsdE, sulfur acceptor protein CsdE - none -
fig|6666666.229913.peg.1475 CDS CP016553.1 1446036 1444606 -3 - 1431 ADP-heptose synthase (EC 2.7.-.-) / D-glycero-beta-D-manno-heptose 7-phosphate kinase LOS core oligosaccharide biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.229913.peg.1476 CDS CP016553.1 1446150 1447085 3 + 936 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) KDO2-Lipid A biosynthesis
fig|6666666.229913.peg.1477 CDS CP016553.1 1447706 1447143 -2 - 564 Putative oxidoreductase component of anaerobic dehydrogenases; Functional role page for Chaperone protein TorD - none -
fig|6666666.229913.peg.1478 CDS CP016553.1 1448317 1447706 -1 - 612 NAD(P)H oxidoreductase YRKL (EC 1.6.99.-) @ Putative NADPH-quinone reductase (modulator of drug activity B) @ Flavodoxin 2 Flavodoxin;
Flavodoxin
fig|6666666.229913.peg.1479 CDS CP016553.1 1448772 1448326 -3 - 447 Putative activity regulator of membrane protease YbbK - none -
fig|6666666.229913.peg.1480 CDS CP016553.1 1449722 1448796 -2 - 927 Putative stomatin/prohibitin-family membrane protease subunit YbbK - none -
fig|6666666.229913.peg.1481 CDS CP016553.1 1451065 1450244 -1 - 822 probable glucanotransferase (endo alpha-1,4 polygalactosaminidase related protein) - none -
fig|6666666.229913.peg.1482 CDS CP016553.1 1452065 1451838 -2 - 228 hypothetical protein - none -
fig|6666666.229913.peg.1483 CDS CP016553.1 1452867 1454249 3 + 1383 Cytochrome c551 peroxidase (EC 1.11.1.5) Protection from Reactive Oxygen Species
fig|6666666.229913.peg.1484 CDS CP016553.1 1455494 1454256 -2 - 1239 Ribonuclease D (EC 3.1.26.3) tRNA processing
fig|6666666.229913.peg.1485 CDS CP016553.1 1456643 1455561 -2 - 1083 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) Biotin biosynthesis;
Biotin synthesis cluster
fig|6666666.229913.peg.1486 CDS CP016553.1 1457249 1456644 -2 - 606 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) Biotin biosynthesis;
Biotin synthesis cluster
fig|6666666.229913.peg.1487 CDS CP016553.1 1457849 1457292 -2 - 558 Starvation lipoprotein Slp paralog Carbon Starvation
fig|6666666.229913.peg.1488 CDS CP016553.1 1458603 1457881 -3 - 723 TsaB protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Ribosome biogenesis bacterial;
YgjD and YeaZ;
YjeE;
YrdC-YciO-Sua5 protein family
fig|6666666.229913.peg.1489 CDS CP016553.1 1460543 1458606 -2 - 1938 DinG family ATP-dependent helicase YoaA DNA repair, bacterial DinG and relatives
fig|6666666.229913.peg.1490 CDS CP016553.1 1460619 1461437 3 + 819 Aldose 1-epimerase - none -
fig|6666666.229913.peg.1491 CDS CP016553.1 1461720 1461589 -3 - 132 hypothetical protein - none -
fig|6666666.229913.peg.1492 CDS CP016553.1 1462693 1461791 -1 - 903 Maltose operon periplasmic protein MalM Maltose and Maltodextrin Utilization
fig|6666666.229913.peg.1493 CDS CP016553.1 1464062 1462779 -2 - 1284 Maltoporin (maltose/maltodextrin high-affinity receptor, phage lambda receptor protein) Maltose and Maltodextrin Utilization
fig|6666666.229913.peg.1494 CDS CP016553.1 1465257 1464139 -3 - 1119 Maltose/maltodextrin transport ATP-binding protein MalK (EC 3.6.3.19) Maltose and Maltodextrin Utilization
fig|6666666.229913.peg.1495 CDS CP016553.1 1465713 1466903 3 + 1191 Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein MalE Alpha-Amylase locus in Streptocococcus;
Bacterial Chemotaxis;
Maltose and Maltodextrin Utilization
fig|6666666.229913.peg.1496 CDS CP016553.1 1466872 1467003 1 + 132 hypothetical protein - none -
fig|6666666.229913.peg.1497 CDS CP016553.1 1467027 1468565 3 + 1539 Maltose/maltodextrin ABC transporter, permease protein MalF Maltose and Maltodextrin Utilization
fig|6666666.229913.peg.1498 CDS CP016553.1 1468587 1469477 3 + 891 Maltose/maltodextrin ABC transporter, permease protein MalG Maltose and Maltodextrin Utilization
fig|6666666.229913.peg.1499 CDS CP016553.1 1469571 1471622 3 + 2052 Periplasmic alpha-amylase (EC 3.2.1.1) Maltose and Maltodextrin Utilization
fig|6666666.229913.peg.1500 CDS CP016553.1 1472722 1471682 -1 - 1041 Sulfate and thiosulfate import ATP-binding protein CysA (EC 3.6.3.25) Cysteine Biosynthesis;
Uptake of selenate and selenite
fig|6666666.229913.peg.1501 CDS CP016553.1 1474736 1472706 -2 - 2031 Ferric iron ABC transporter, permease protein Iron acquisition in Streptococcus
fig|6666666.229913.peg.1502 CDS CP016553.1 1475816 1474788 -2 - 1029 Ferric iron ABC transporter, iron-binding protein Iron acquisition in Streptococcus
fig|6666666.229913.peg.1503 CDS CP016553.1 1475988 1475827 -3 - 162 hypothetical protein - none -
fig|6666666.229913.peg.1504 CDS CP016553.1 1476090 1477562 3 + 1473 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) Restriction-Modification System
fig|6666666.229913.peg.1505 CDS CP016553.1 1477528 1477656 1 + 129 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) Restriction-Modification System
fig|6666666.229913.peg.1506 CDS CP016553.1 1477865 1480135 2 + 2271 Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) Ribonucleotide reduction
fig|6666666.229913.peg.1507 CDS CP016553.1 1480170 1481231 3 + 1062 hypothetical protein - none -
fig|6666666.229913.peg.1508 CDS CP016553.1 1481233 1482186 1 + 954 hypothetical protein - none -
fig|6666666.229913.peg.1509 CDS CP016553.1 1482207 1483337 3 + 1131 Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) Ribonucleotide reduction
fig|6666666.229913.peg.1510 CDS CP016553.1 1483359 1483628 3 + 270 hypothetical protein - none -
fig|6666666.229913.peg.1511 CDS CP016553.1 1483698 1483946 3 + 249 Ferredoxin Soluble cytochromes and functionally related electron carriers
fig|6666666.229913.peg.1512 CDS CP016553.1 1484848 1484036 -1 - 813 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229913.peg.1513 CDS CP016553.1 1485493 1484870 -1 - 624 L-lysine permease - none -
fig|6666666.229913.peg.1514 CDS CP016553.1 1485993 1485502 -3 - 492 Phosphatidylglycerophosphatase A (EC 3.1.3.27) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Riboflavin synthesis cluster
fig|6666666.229913.peg.1515 CDS CP016553.1 1486986 1486003 -3 - 984 Thiamine-monophosphate kinase (EC 2.7.4.16) 5-FCL-like protein;
Riboflavin synthesis cluster;
Thiamin biosynthesis
fig|6666666.229913.peg.1516 CDS CP016553.1 1487430 1487005 -3 - 426 Transcription termination protein NusB Riboflavin synthesis cluster;
Transcription factors bacterial
fig|6666666.229913.peg.1517 CDS CP016553.1 1487910 1487437 -3 - 474 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster
fig|6666666.229913.peg.1518 CDS CP016553.1 1488153 1489037 3 + 885 hypothetical protein - none -
fig|6666666.229913.peg.1519 CDS CP016553.1 1491007 1489358 -1 - 1650 Glucose-6-phosphate isomerase (EC 5.3.1.9) Glycolysis and Gluconeogenesis
fig|6666666.229913.peg.1520 CDS CP016553.1 1492105 1491023 -1 - 1083 Alanine racemase (EC 5.1.1.1) ## biosynthetic Alanine biosynthesis;
Pyruvate Alanine Serine Interconversions
fig|6666666.229913.peg.1521 CDS CP016553.1 1493535 1492129 -3 - 1407 Replicative DNA helicase (EC 3.6.1.-) - none -
fig|6666666.229913.peg.1522 CDS CP016553.1 1493550 1493672 3 + 123 hypothetical protein - none -
fig|6666666.229913.peg.1523 CDS CP016553.1 1494760 1493681 -1 - 1080 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha (EC 2.5.1.54) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229913.peg.1524 CDS CP016553.1 1496111 1494861 -2 - 1251 Lipoprotein releasing system transmembrane protein LolE Lipopolysaccharide assembly;
Lipoprotein sorting system
fig|6666666.229913.peg.1525 CDS CP016553.1 1496797 1496111 -1 - 687 Lipoprotein releasing system ATP-binding protein LolD Lipopolysaccharide assembly;
Lipoprotein sorting system
fig|6666666.229913.peg.1526 CDS CP016553.1 1497996 1496812 -3 - 1185 Lipoprotein releasing system transmembrane protein LolC Lipopolysaccharide assembly;
Lipoprotein sorting system
fig|6666666.229913.peg.1527 CDS CP016553.1 1499432 1498563 -2 - 870 hypothetical protein - none -
fig|6666666.229913.peg.1528 CDS CP016553.1 1502050 1499759 -1 - 2292 hypothetical protein - none -
fig|6666666.229913.peg.1529 CDS CP016553.1 1502664 1502032 -3 - 633 hypothetical protein - none -
fig|6666666.229913.peg.1530 CDS CP016553.1 1504069 1502675 -1 - 1395 hypothetical protein - none -
fig|6666666.229913.peg.1531 CDS CP016553.1 1504386 1504511 3 + 126 Mobile element protein - none -
fig|6666666.229913.peg.1532 CDS CP016553.1 1504513 1504713 1 + 201 Mobile element protein - none -
fig|6666666.229913.peg.1533 CDS CP016553.1 1505058 1504702 -3 - 357 YcgN (Fragment) CBSS-243277.1.peg.4359
fig|6666666.229913.peg.1534 CDS CP016553.1 1505057 1505173 2 + 117 hypothetical protein - none -
fig|6666666.229913.peg.1535 CDS CP016553.1 1505466 1505170 -3 - 297 HigA protein (antitoxin to HigB) Toxin-antitoxin replicon stabilization systems
fig|6666666.229913.peg.1536 CDS CP016553.1 1505619 1505476 -3 - 144 HigB toxin protein Toxin-antitoxin replicon stabilization systems
fig|6666666.229913.peg.1537 CDS CP016553.1 1507565 1505874 -2 - 1692 Glutaminyl-tRNA synthetase (EC 6.1.1.18) tRNA aminoacylation, Glu and Gln
fig|6666666.229913.peg.1538 CDS CP016553.1 1507766 1508950 2 + 1185 Macrolide-specific efflux protein MacA Multidrug Resistance Efflux Pumps
fig|6666666.229913.peg.1539 CDS CP016553.1 1508970 1510904 3 + 1935 Macrolide export ATP-binding/permease protein MacB (EC 3.6.3.-) Multidrug Resistance Efflux Pumps
fig|6666666.229913.peg.1540 CDS CP016553.1 1510981 1512354 1 + 1374 RND efflux system, outer membrane lipoprotein CmeC Multidrug Resistance Efflux Pumps
fig|6666666.229913.peg.1541 CDS CP016553.1 1514150 1512609 -2 - 1542 Esterase/lipase - none -
fig|6666666.229913.peg.1542 CDS CP016553.1 1514590 1514267 -1 - 324 Alkylphosphonate utilization operon protein PhnA - none -
fig|6666666.229913.peg.1543 CDS CP016553.1 1515363 1514674 -3 - 690 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229913.peg.1544 CDS CP016553.1 1515536 1515360 -2 - 177 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229913.peg.1545 CDS CP016553.1 1516258 1515581 -1 - 678 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses;
Ribosome biogenesis bacterial;
tRNA modification Bacteria
fig|6666666.229913.peg.1546 CDS CP016553.1 1516390 1517298 1 + 909 Putative surface protein - none -
fig|6666666.229913.peg.1547 CDS CP016553.1 1517312 1518769 2 + 1458 Cardiolipin synthetase (EC 2.7.8.-) Cardiolipin synthesis;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229913.peg.1548 CDS CP016553.1 1518831 1519472 3 + 642 Hypothetical, related to broad specificity phosphatases COG0406 CBSS-196164.1.peg.461
fig|6666666.229913.peg.1549 CDS CP016553.1 1520875 1519529 -1 - 1347 Dihydrofolate synthase (EC 6.3.2.12) @ Folylpolyglutamate synthase (EC 6.3.2.17) Folate Biosynthesis;
Folate Biosynthesis
fig|6666666.229913.peg.1550 CDS CP016553.1 1521794 1520898 -2 - 897 Acetyl-coenzyme A carboxyl transferase beta chain (EC 6.4.1.2) Fatty Acid Biosynthesis FASII
fig|6666666.229913.peg.1551 CDS CP016553.1 1522020 1522265 3 + 246 Exodeoxyribonuclease VII small subunit (EC 3.1.11.6) DNA repair, bacterial;
Purine salvage cluster
fig|6666666.229913.peg.1552 CDS CP016553.1 1522276 1523166 1 + 891 Octaprenyl diphosphate synthase (EC 2.5.1.90) / Dimethylallyltransferase (EC 2.5.1.1) / (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10) / Geranylgeranyl diphosphate synthase (EC 2.5.1.29) Isoprenoid Biosynthesis;
Isoprenoid Biosynthesis;
Isoprenoid Biosynthesis: Interconversions;
Isoprenoinds for Quinones;
Isoprenoinds for Quinones;
Isoprenoinds for Quinones;
Isoprenoinds for Quinones;
Polyprenyl Diphosphate Biosynthesis;
Polyprenyl Diphosphate Biosynthesis;
Polyprenyl Diphosphate Biosynthesis
fig|6666666.229913.peg.1553 CDS CP016553.1 1523251 1525101 1 + 1851 1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis;
Pyridoxin (Vitamin B6) Biosynthesis;
Thiamin biosynthesis
fig|6666666.229913.peg.1554 CDS CP016553.1 1525979 1525221 -2 - 759 Galactitol utilization operon repressor - none -
fig|6666666.229913.peg.1555 CDS CP016553.1 1527026 1526046 -2 - 981 Galactitol-1-phosphate 5-dehydrogenase (EC 1.1.1.251) - none -
fig|6666666.229913.peg.1556 CDS CP016553.1 1529250 1527049 -3 - 2202 PTS system, galactitol-specific IIC component (EC 2.7.1.69) - none -
fig|6666666.229913.peg.1557 CDS CP016553.1 1530218 1529265 -2 - 954 Tagatose 1,6-diphosphate aldolase (EC 4.1.2.40) Lactose and Galactose Uptake and Utilization
fig|6666666.229913.peg.1558 CDS CP016553.1 1530309 1530428 3 + 120 hypothetical protein - none -
fig|6666666.229913.peg.1559 CDS CP016553.1 1531548 1531195 -3 - 354 LSU ribosomal protein L20p - none -
fig|6666666.229913.peg.1560 CDS CP016553.1 1531817 1532023 2 + 207 hypothetical protein - none -
fig|6666666.229913.peg.1561 CDS CP016553.1 1532503 1532024 -1 - 480 Translation initiation factor 3 Translation initiation factors bacterial
fig|6666666.229913.peg.1562 CDS CP016553.1 1532879 1533658 2 + 780 Ferredoxin--NADP(+) reductase (EC 1.18.1.2) Biogenesis of cytochrome c oxidases
fig|6666666.229913.peg.1563 CDS CP016553.1 1533676 1533813 1 + 138 hypothetical protein - none -
fig|6666666.229913.peg.1564 CDS CP016553.1 1533824 1534198 2 + 375 hypothetical protein - none -
fig|6666666.229913.peg.1565 CDS CP016553.1 1534240 1534956 1 + 717 Mobile element protein - none -
fig|6666666.229913.peg.1566 CDS CP016553.1 1536992 1535061 -2 - 1932 Threonyl-tRNA synthetase (EC 6.1.1.3) tRNA aminoacylation, Thr
fig|6666666.229913.peg.1567 CDS CP016553.1 1537232 1538107 2 + 876 Ribulosamine/erythrulosamine 3-kinase potentially involved in protein deglycation Protein deglycation
fig|6666666.229913.peg.1568 CDS CP016553.1 1538653 1538375 -1 - 279 Ethidium bromide-methyl viologen resistance protein EmrE - none -
fig|6666666.229913.peg.1569 CDS CP016553.1 1539815 1538871 -2 - 945 Hydroxypyruvate reductase (EC 1.1.1.81) Glycerate metabolism;
Glycolate, glyoxylate interconversions
fig|6666666.229913.peg.1570 CDS CP016553.1 1540537 1539971 -1 - 567 Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Folate Biosynthesis;
Tryptophan synthesis
fig|6666666.229913.peg.1571 CDS CP016553.1 1540640 1541614 2 + 975 Para-aminobenzoate synthase, aminase component (EC 2.6.1.85) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Folate Biosynthesis;
Tryptophan synthesis
fig|6666666.229913.peg.1572 CDS CP016553.1 1541617 1542207 1 + 591 Aminodeoxychorismate lyase (EC 4.1.3.38) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Folate Biosynthesis;
Tryptophan synthesis
fig|6666666.229913.peg.1573 CDS CP016553.1 1542390 1542560 3 + 171 hypothetical protein - none -
fig|6666666.229913.peg.1574 CDS CP016553.1 1542557 1544431 2 + 1875 VgrG-3 protein - none -
fig|6666666.229913.peg.1575 CDS CP016553.1 1544463 1546580 3 + 2118 Probable phospholipase protein - none -
fig|6666666.229913.peg.1576 CDS CP016553.1 1546580 1547752 2 + 1173 miscellaneous; hypothetical/partial homology - none -
fig|6666666.229913.peg.1577 CDS CP016553.1 1547797 1547916 1 + 120 hypothetical protein - none -
fig|6666666.229913.peg.1578 CDS CP016553.1 1549257 1548187 -3 - 1071 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229913.peg.1579 CDS CP016553.1 1549725 1549330 -3 - 396 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229913.peg.1580 CDS CP016553.1 1550146 1549781 -1 - 366 FIG039061: hypothetical protein related to heme utilization - none -
fig|6666666.229913.peg.1581 CDS CP016553.1 1550288 1552327 2 + 2040 Oligopeptidase A (EC 3.4.24.70) Protein degradation
fig|6666666.229913.peg.1582 CDS CP016553.1 1552953 1552453 -3 - 501 PTS system, glucose-specific IIA component - none -
fig|6666666.229913.peg.1583 CDS CP016553.1 1554741 1553014 -3 - 1728 Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) Fructose utilization;
Mannitol Utilization
fig|6666666.229913.peg.1584 CDS CP016553.1 1555115 1554858 -2 - 258 Phosphotransferase system, phosphocarrier protein HPr Fructose utilization;
Mannitol Utilization
fig|6666666.229913.peg.1585 CDS CP016553.1 1556376 1555336 -3 - 1041 Ribosome small subunit-stimulated GTPase EngC Universal GTPases
fig|6666666.229913.peg.1586 CDS CP016553.1 1556448 1556996 3 + 549 3@1-to-5@1 oligoribonuclease (orn) RNA processing and degradation, bacterial
fig|6666666.229913.peg.1587 CDS CP016553.1 1557693 1557286 -3 - 408 putative lipoprotein - none -
fig|6666666.229913.peg.1588 CDS CP016553.1 1559090 1557702 -2 - 1389 putative exported protein - none -
fig|6666666.229913.peg.1589 CDS CP016553.1 1559961 1559101 -3 - 861 FIG00698030: hypothetical protein - none -
fig|6666666.229913.peg.1590 CDS CP016553.1 1560593 1559961 -2 - 633 Possible exported protein - none -
fig|6666666.229913.peg.1591 CDS CP016553.1 1560976 1560605 -1 - 372 FIG00696467: hypothetical protein - none -
fig|6666666.229913.peg.1592 CDS CP016553.1 1561402 1560995 -1 - 408 FIG00696269: hypothetical protein - none -
fig|6666666.229913.peg.1593 CDS CP016553.1 1561658 1561419 -2 - 240 hypothetical protein - none -
fig|6666666.229913.peg.1594 CDS CP016553.1 1561981 1561658 -1 - 324 FIG00696053: hypothetical protein - none -
fig|6666666.229913.peg.1595 CDS CP016553.1 1562329 1562216 -1 - 114 hypothetical protein - none -
fig|6666666.229913.peg.1596 CDS CP016553.1 1563031 1563792 1 + 762 DUF1526 domain-containing protein - none -
fig|6666666.229913.peg.1597 CDS CP016553.1 1564959 1564399 -3 - 561 Cytolethal distending toxin subunit C Cytolethal distending toxin of Campylobacter jejuni;
Cytolethal distending toxins
fig|6666666.229913.peg.1598 CDS CP016553.1 1565821 1564970 -1 - 852 Cytolethal distending toxin subunit B Cytolethal distending toxin of Campylobacter jejuni;
Cytolethal distending toxins
fig|6666666.229913.peg.1599 CDS CP016553.1 1566504 1565836 -3 - 669 Cytolethal distending toxin subunit A Cytolethal distending toxin of Campylobacter jejuni;
Cytolethal distending toxins
fig|6666666.229913.peg.1600 CDS CP016553.1 1567413 1567069 -3 - 345 Programmed cell death toxin MazF - none -
fig|6666666.229913.peg.1601 CDS CP016553.1 1567670 1567416 -2 - 255 hypothetical protein - none -
fig|6666666.229913.peg.1602 CDS CP016553.1 1568420 1568241 -2 - 180 hypothetical protein - none -
fig|6666666.229913.peg.1603 CDS CP016553.1 1568913 1568734 -3 - 180 Haemophilus-specific protein, uncharacterized - none -
fig|6666666.229913.peg.1604 CDS CP016553.1 1569207 1571117 3 + 1911 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes - none -
fig|6666666.229913.peg.1605 CDS CP016553.1 1571201 1572022 2 + 822 probable phage integrase - none -
fig|6666666.229913.peg.1606 CDS CP016553.1 1572535 1574049 1 + 1515 Dca - none -
fig|6666666.229913.peg.1607 CDS CP016553.1 1574078 1574695 2 + 618 Glycerate kinase (EC 2.7.1.31) D-galactarate, D-glucarate and D-glycerate catabolism;
D-galactarate, D-glucarate and D-glycerate catabolism - gjo;
Glycerate metabolism;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Glycine and Serine Utilization;
Serine-glyoxylate cycle
fig|6666666.229913.peg.1608 CDS CP016553.1 1574682 1576190 3 + 1509 putative integral membrane protein - none -
fig|6666666.229913.peg.1609 CDS CP016553.1 1576198 1577118 1 + 921 RfbJ protein - none -
fig|6666666.229913.peg.1610 CDS CP016553.1 1577506 1579299 1 + 1794 Mlr4739 protein - none -
fig|6666666.229913.peg.1611 CDS CP016553.1 1579480 1579352 -1 - 129 hypothetical protein - none -
fig|6666666.229913.peg.1612 CDS CP016553.1 1579455 1579949 3 + 495 TsaE protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA Scaffold proteins for [4Fe-4S] cluster assembly (MRP family);
YjeE;
YrdC-YciO-Sua5 protein family
fig|6666666.229913.peg.1613 CDS CP016553.1 1579946 1581433 2 + 1488 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) Murein Hydrolases;
Recycling of Peptidoglycan Amino Acids
fig|6666666.229913.peg.1614 CDS CP016553.1 1581433 1583283 1 + 1851 DNA mismatch repair protein MutL DNA repair, bacterial MutL-MutS system
fig|6666666.229913.peg.1615 CDS CP016553.1 1583298 1584242 3 + 945 tRNA dimethylallyltransferase (EC 2.5.1.75) tRNA modification Bacteria;
tRNA processing
fig|6666666.229913.peg.1616 CDS CP016553.1 1584362 1584658 2 + 297 RNA-binding protein Hfq Hfl operon;
Polyadenylation bacterial
fig|6666666.229913.peg.1617 CDS CP016553.1 1584731 1584618 -2 - 114 hypothetical protein - none -
fig|6666666.229913.peg.1618 CDS CP016553.1 1584906 1585022 3 + 117 hypothetical protein - none -
fig|6666666.229913.peg.1619 CDS CP016553.1 1585995 1585036 -3 - 960 Transcriptional repressor protein TyrR Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate);
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229913.peg.1620 CDS CP016553.1 1587158 1586079 -2 - 1080 Membrane protein YcjF A conserved operon linked to TyrR and possibly involved in virulence
fig|6666666.229913.peg.1621 CDS CP016553.1 1588586 1587171 -2 - 1416 Conserved protein YcjX with nucleoside triphosphate hydrolase domain A conserved operon linked to TyrR and possibly involved in virulence
fig|6666666.229913.peg.1622 CDS CP016553.1 1588852 1590483 1 + 1632 Peptide transport periplasmic protein SapA Peptide ABC transport system Sap
fig|6666666.229913.peg.1623 CDS CP016553.1 1590483 1591448 3 + 966 Peptide transport system permease protein SapB Peptide ABC transport system Sap
fig|6666666.229913.peg.1624 CDS CP016553.1 1591438 1592325 1 + 888 Peptide transport system permease protein SapC Peptide ABC transport system Sap
fig|6666666.229913.peg.1625 CDS CP016553.1 1592333 1593385 2 + 1053 Peptide transport system ATP-binding protein SapD Peptide ABC transport system Sap
fig|6666666.229913.peg.1626 CDS CP016553.1 1593389 1594207 2 + 819 Peptide transport system ATP-binding protein SapF Peptide ABC transport system Sap
fig|6666666.229913.peg.1628 CDS CP016553.1 1601512 1600439 -1 - 1074 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) - none -
fig|6666666.229913.peg.1629 CDS CP016553.1 1601640 1602923 3 + 1284 Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8) CBSS-196164.1.peg.461;
Heme and Siroheme Biosynthesis
fig|6666666.229913.peg.1630 CDS CP016553.1 1605590 1602999 -2 - 2592 [Protein-PII] uridylyltransferase (EC 2.7.7.59) Ammonia assimilation;
CBSS-312309.3.peg.1965
fig|6666666.229913.peg.1631 CDS CP016553.1 1606462 1605662 -1 - 801 Methionine aminopeptidase (EC 3.4.11.18) CBSS-312309.3.peg.1965;
Translation termination factors bacterial
fig|6666666.229913.peg.1632 CDS CP016553.1 1606596 1606937 3 + 342 probable iron binding protein from the HesB_IscA_SufA family - none -
fig|6666666.229913.peg.1633 CDS CP016553.1 1606939 1607154 1 + 216 hypothetical protein - none -
fig|6666666.229913.peg.1634 CDS CP016553.1 1607200 1609593 1 + 2394 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) DNA uptake cluster;
Peptidoglycan Biosynthesis;
Type IV pilus
fig|6666666.229913.peg.1635 CDS CP016553.1 1609892 1611799 2 + 1908 High-affinity Fe2+/Pb2+ permease precursor Iron transport system including ABC transporter
fig|6666666.229913.peg.1636 CDS CP016553.1 1611842 1612363 2 + 522 Periplasmic protein p19 involved in high-affinity Fe2+ transport Iron transport system including ABC transporter
fig|6666666.229913.peg.1637 CDS CP016553.1 1612501 1613931 1 + 1431 Fe2+ ABC transporter, substrate binding protein Iron transport system including ABC transporter
fig|6666666.229913.peg.1638 CDS CP016553.1 1613934 1615259 3 + 1326 Cell division protein FtsX Bacterial Cell Division
fig|6666666.229913.peg.1639 CDS CP016553.1 1615246 1616385 1 + 1140 Fe2+ ABC transporter, permease protein 2 Iron transport system including ABC transporter
fig|6666666.229913.peg.1640 CDS CP016553.1 1616387 1617058 2 + 672 Fe2+ ABC transporter, ATP-binding subunit Iron transport system including ABC transporter
fig|6666666.229913.peg.1641 CDS CP016553.1 1617048 1617539 3 + 492 Possible periplasmic thiredoxin Iron transport system including ABC transporter
fig|6666666.229913.peg.1642 CDS CP016553.1 1617546 1617857 3 + 312 Cytochrome C553 (soluble cytochrome f) Iron transport system including ABC transporter;
Soluble cytochromes and functionally related electron carriers
fig|6666666.229913.peg.1643 CDS CP016553.1 1618058 1618723 2 + 666 Phosphoglycolate phosphatase (EC 3.1.3.18) 2-phosphoglycolate salvage;
Glycolate, glyoxylate interconversions
fig|6666666.229913.peg.1644 CDS CP016553.1 1618901 1618701 -2 - 201 hypothetical protein - none -
fig|6666666.229913.peg.1645 CDS CP016553.1 1619053 1620087 1 + 1035 ATPase domain protein - none -
fig|6666666.229913.peg.1646 CDS CP016553.1 1624223 1620174 -2 - 4050 HrpA-like helicases - none -
fig|6666666.229913.peg.1647 CDS CP016553.1 1624609 1624220 -1 - 390 COG2363 - none -
fig|6666666.229913.peg.1648 CDS CP016553.1 1625212 1624610 -1 - 603 putative membrane protein - none -
fig|6666666.229913.peg.1649 CDS CP016553.1 1625516 1625187 -2 - 330 Glutaredoxin-related protein Glutaredoxins
fig|6666666.229913.peg.1650 CDS CP016553.1 1626874 1625834 -1 - 1041 Outer membrane protein A precursor Osmoregulation
fig|6666666.229913.peg.1651 CDS CP016553.1 1627359 1629608 3 + 2250 Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD Glycolate, glyoxylate interconversions
fig|6666666.229913.peg.1652 CDS CP016553.1 1629642 1630412 3 + 771 Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD Glycolate, glyoxylate interconversions
fig|6666666.229913.peg.1653 CDS CP016553.1 1630422 1630844 3 + 423 FIG017415: ydiI hotdog fold superfamily - none -
fig|6666666.229913.peg.1654 CDS CP016553.1 1630837 1631901 1 + 1065 Ferrochelatase, protoheme ferro-lyase (EC 4.99.1.1) Heme and Siroheme Biosynthesis
fig|6666666.229913.peg.1655 CDS CP016553.1 1631942 1632442 2 + 501 Thiol peroxidase, Tpx-type (EC 1.11.1.15) Thioredoxin-disulfide reductase
fig|6666666.229913.peg.1656 CDS CP016553.1 1632547 1632434 -1 - 114 hypothetical protein - none -
fig|6666666.229913.peg.1657 CDS CP016553.1 1633768 1632647 -1 - 1122 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism
fig|6666666.229913.peg.1658 CDS CP016553.1 1634651 1633848 -2 - 804 Glucosamine-6-phosphate deaminase (EC 3.5.99.6) Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism
fig|6666666.229913.peg.1659 CDS CP016553.1 1635684 1634806 -3 - 879 N-acetylneuraminate lyase (EC 4.1.3.3) Sialic Acid Metabolism
fig|6666666.229913.peg.1660 CDS CP016553.1 1636563 1635694 -3 - 870 Sialic acid utilization regulator, RpiR family Sialic Acid Metabolism
fig|6666666.229913.peg.1661 CDS CP016553.1 1637460 1636573 -3 - 888 N-acetylmannosamine kinase (EC 2.7.1.60) Sialic Acid Metabolism
fig|6666666.229913.peg.1662 CDS CP016553.1 1638175 1637474 -1 - 702 N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9) Sialic Acid Metabolism
fig|6666666.229913.peg.1663 CDS CP016553.1 1638417 1639403 3 + 987 TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein Sialic Acid Metabolism
fig|6666666.229913.peg.1664 CDS CP016553.1 1639467 1641317 3 + 1851 TRAP-type transport system, large permease component, predicted N-acetylneuraminate transporter / TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229913.peg.1665 CDS CP016553.1 1641455 1642585 2 + 1131 Sialic acid-induced transmembrane protein YjhT(NanM), possible mutarotase Sialic Acid Metabolism
fig|6666666.229913.peg.1666 CDS CP016553.1 1642834 1644300 1 + 1467 PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69) Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism;
Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229913.peg.1667 CDS CP016553.1 1644831 1645001 3 + 171 hypothetical protein - none -
fig|6666666.229913.peg.1668 CDS CP016553.1 1644998 1646917 2 + 1920 VgrG-3 protein - none -
fig|6666666.229913.peg.1669 CDS CP016553.1 1646933 1648054 2 + 1122 hypothetical protein - none -
fig|6666666.229913.peg.1670 CDS CP016553.1 1648091 1648420 2 + 330 hypothetical protein - none -
fig|6666666.229913.peg.1671 CDS CP016553.1 1648520 1648675 2 + 156 hypothetical protein - none -
fig|6666666.229913.peg.1672 CDS CP016553.1 1649236 1649946 1 + 711 hypothetical protein - none -
fig|6666666.229913.peg.1673 CDS CP016553.1 1650129 1651073 3 + 945 hypothetical protein - none -
fig|6666666.229913.peg.1674 CDS CP016553.1 1651640 1652272 2 + 633 hypothetical protein - none -
fig|6666666.229913.peg.1675 CDS CP016553.1 1653853 1653719 -1 - 135 Mobile element protein - none -
fig|6666666.229913.peg.1676 CDS CP016553.1 1654166 1654032 -2 - 135 Mobile element protein - none -
fig|6666666.229913.peg.1677 CDS CP016553.1 1654469 1654648 2 + 180 hypothetical protein - none -
fig|6666666.229913.peg.1678 CDS CP016553.1 1656700 1655477 -1 - 1224 N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family Chitin and N-acetylglucosamine utilization
fig|6666666.229913.peg.1679 CDS CP016553.1 1658066 1656762 -2 - 1305 Glutamyl-tRNA reductase (EC 1.2.1.70) A Gammaproteobacteria Cluster Relating to Translation;
Heme and Siroheme Biosynthesis
fig|6666666.229913.peg.1680 CDS CP016553.1 1658953 1658252 -1 - 702 Hydroxyacylglutathione hydrolase (EC 3.1.2.6) CBSS-228410.1.peg.134;
CBSS-342610.3.peg.1536;
Glutathione: Non-redox reactions;
Methylglyoxal Metabolism
fig|6666666.229913.peg.1681 CDS CP016553.1 1658974 1659672 1 + 699 FIG005121: SAM-dependent methyltransferase (EC 2.1.1.-) CBSS-228410.1.peg.134;
CBSS-342610.3.peg.1536;
Glutathione: Non-redox reactions
fig|6666666.229913.peg.1682 CDS CP016553.1 1660281 1659730 -3 - 552 PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69) Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism;
Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229913.peg.1683 CDS CP016553.1 1661222 1660233 -2 - 990 PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69) Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism;
Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229913.peg.1684 CDS CP016553.1 1661748 1661410 -3 - 339 FIG00904093: hypothetical protein - none -
fig|6666666.229913.peg.1685 CDS CP016553.1 1661924 1663129 2 + 1206 Mannose-6-phosphate isomerase (EC 5.3.1.8) Mannose Metabolism
fig|6666666.229913.peg.1686 CDS CP016553.1 1663225 1664988 1 + 1764 FIG00696060: hypothetical protein - none -
fig|6666666.229913.peg.1687 CDS CP016553.1 1665158 1665568 2 + 411 probable membrane protein YPO3565 - none -
fig|6666666.229913.peg.1688 CDS CP016553.1 1665696 1665526 -3 - 171 hypothetical protein - none -
fig|6666666.229913.peg.1689 CDS CP016553.1 1665759 1667141 3 + 1383 Outer membrane stress sensor protease DegQ, serine protease Periplasmic Stress Response;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229913.peg.1690 CDS CP016553.1 1668402 1667332 -3 - 1071 Outer membrane protein A precursor Osmoregulation
fig|6666666.229913.peg.1691 CDS CP016553.1 1670671 1668629 -1 - 2043 Excinuclease ABC subunit B DNA repair, UvrABC system
fig|6666666.229913.peg.1692 CDS CP016553.1 1672314 1671283 -3 - 1032 putative membrane protein - none -
fig|6666666.229913.peg.1693 CDS CP016553.1 1672994 1672329 -2 - 666 putative exported protein - none -
fig|6666666.229913.peg.1694 CDS CP016553.1 1673397 1675043 3 + 1647 ABC transporter ATP-binding protein - none -
fig|6666666.229913.peg.1695 CDS CP016553.1 1676034 1675147 -3 - 888 putative adhesin/invasin - none -
fig|6666666.229913.peg.1696 CDS CP016553.1 1676597 1678423 2 + 1827 Topoisomerase IV subunit B (EC 5.99.1.-) DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.229913.peg.1697 CDS CP016553.1 1678873 1679007 1 + 135 hypothetical protein - none -
fig|6666666.229913.peg.1698 CDS CP016553.1 1679015 1681270 2 + 2256 Topoisomerase IV subunit A (EC 5.99.1.-) DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.229913.peg.1699 CDS CP016553.1 1681554 1682165 3 + 612 Glutathione S-transferase (EC 2.5.1.18) Glutathione: Non-redox reactions
fig|6666666.229913.peg.1700 CDS CP016553.1 1683054 1682230 -3 - 825 Outer membrane protein A precursor Osmoregulation
fig|6666666.229913.peg.1701 CDS CP016553.1 1684302 1683244 -3 - 1059 Possible protease sohB (EC 3.4.21.-) - none -
fig|6666666.229913.peg.1702 CDS CP016553.1 1684495 1685085 1 + 591 FMN-dependent NADH-azoreductase - none -
fig|6666666.229913.peg.1703 CDS CP016553.1 1686516 1685179 -3 - 1338 NADH dehydrogenase (EC 1.6.99.3) Respiratory dehydrogenases 1;
Riboflavin synthesis cluster
fig|6666666.229913.peg.1704 CDS CP016553.1 1688282 1686693 -2 - 1590 Glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Respiratory dehydrogenases 1
fig|6666666.229913.peg.1705 CDS CP016553.1 1689400 1688552 -1 - 849 rRNA small subunit methyltransferase I 16S rRNA modification within P site of ribosome;
CBSS-160492.1.peg.550;
Heat shock dnaK gene cluster extended
fig|6666666.229913.peg.1706 CDS CP016553.1 1689477 1691195 3 + 1719 LppC putative lipoprotein CBSS-160492.1.peg.550
fig|6666666.229913.peg.1707 CDS CP016553.1 1691205 1691564 3 + 360 Predicted endonuclease distantly related to archaeal Holliday junction resolvase CBSS-160492.1.peg.550
fig|6666666.229913.peg.1708 CDS CP016553.1 1691577 1692161 3 + 585 Phosphoheptose isomerase (EC 5.3.1.-) CBSS-160492.1.peg.550;
Capsular heptose biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.229913.peg.1709 CDS CP016553.1 1692226 1692813 1 + 588 21 kDa hemolysin precursor CBSS-160492.1.peg.550
fig|6666666.229913.peg.1710 CDS CP016553.1 1693611 1692919 -3 - 693 Carbonic anhydrase (EC 4.2.1.1) - none -
fig|6666666.229913.peg.1711 CDS CP016553.1 1693828 1694898 1 + 1071 Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11) / Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) Cluster Ytf and putative sugar transporter;
Peptide methionine sulfoxide reductase;
Peptide methionine sulfoxide reductase;
Putative sugar ABC transporter (ytf cluster)
fig|6666666.229913.peg.1712 CDS CP016553.1 1694902 1695543 1 + 642 Cytochrome c-type biogenesis protein CcdA homolog, associated with MetSO reductase Peptide methionine sulfoxide reductase
fig|6666666.229913.peg.1713 CDS CP016553.1 1695558 1696040 3 + 483 Thiol:disulfide oxidoreductase associated with MetSO reductase Peptide methionine sulfoxide reductase
fig|6666666.229913.peg.1714 CDS CP016553.1 1696372 1696172 -1 - 201 Mobile element protein - none -
fig|6666666.229913.peg.1715 CDS CP016553.1 1696531 1696397 -1 - 135 Mobile element protein - none -
fig|6666666.229913.peg.1716 CDS CP016553.1 1696741 1696538 -1 - 204 Mobile element protein - none -
fig|6666666.229913.peg.1717 CDS CP016553.1 1696854 1697042 3 + 189 hypothetical protein - none -
fig|6666666.229913.peg.1718 CDS CP016553.1 1697324 1697178 -2 - 147 hypothetical protein - none -
fig|6666666.229913.peg.1719 CDS CP016553.1 1697418 1698770 3 + 1353 C4-dicarboxylate transporter DcuC (TC 2.A.61.1.1) Citrate Metabolism, Transport, and Regulation
fig|6666666.229913.peg.1720 CDS CP016553.1 1698800 1698985 2 + 186 hypothetical protein - none -
fig|6666666.229913.peg.1721 CDS CP016553.1 1699026 1699298 3 + 273 DNA-damage-inducible protein J DNA repair, bacterial;
Toxin-antitoxin replicon stabilization systems
fig|6666666.229913.peg.1722 CDS CP016553.1 1699310 1699576 2 + 267 YafQ toxin protein Toxin-antitoxin replicon stabilization systems
fig|6666666.229913.peg.1723 CDS CP016553.1 1699608 1701167 3 + 1560 GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2) Purine conversions
fig|6666666.229913.peg.1724 CDS CP016553.1 1702510 1701560 -1 - 951 hypothetical protein - none -
fig|6666666.229913.peg.1725 CDS CP016553.1 1704292 1705245 1 + 954 Acetyl-coenzyme A carboxyl transferase alpha chain (EC 6.4.1.2) Fatty Acid Biosynthesis FASII
fig|6666666.229913.peg.1726 CDS CP016553.1 1705308 1706165 3 + 858 Pyridoxal kinase (EC 2.7.1.35) Pyridoxin (Vitamin B6) Biosynthesis
fig|6666666.229913.peg.1727 CDS CP016553.1 1706197 1707543 1 + 1347 tRNA(Ile)-lysidine synthetase (EC 6.3.4.19) Cell division-ribosomal stress proteins cluster;
Folate biosynthesis cluster;
tRNA modification Bacteria;
tRNA processing;
tRNAmodification position 34
fig|6666666.229913.peg.1728 CDS CP016553.1 1708902 1707571 -3 - 1332 Guanine-hypoxanthine permease Purine Utilization
fig|6666666.229913.peg.1729 CDS CP016553.1 1709413 1709027 -1 - 387 Integral membrane protein - none -
fig|6666666.229913.peg.1730 CDS CP016553.1 1709607 1710623 3 + 1017 UDP-glucose 4-epimerase (EC 5.1.3.2) Lactose and Galactose Uptake and Utilization;
Rhamnose containing glycans
fig|6666666.229913.peg.1731 CDS CP016553.1 1710629 1710970 2 + 342 [NiFe] hydrogenase nickel incorporation protein HybF NiFe hydrogenase maturation
fig|6666666.229913.peg.1732 CDS CP016553.1 1710977 1712266 2 + 1290 AmpG permease Recycling of Peptidoglycan Amino Acids
fig|6666666.229913.peg.1733 CDS CP016553.1 1712399 1713043 2 + 645 Adenylate kinase (EC 2.7.4.3) Purine conversions
fig|6666666.229913.peg.1734 CDS CP016553.1 1713130 1713243 1 + 114 hypothetical protein - none -
fig|6666666.229913.peg.1735 CDS CP016553.1 1714864 1713491 -1 - 1374 DNA repair protein RadA DNA repair, bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229913.peg.1736 CDS CP016553.1 1716021 1714867 -3 - 1155 Adenylate cyclase (EC 4.6.1.1) cAMP signaling in bacteria
fig|6666666.229913.peg.1737 CDS CP016553.1 1716186 1716866 3 + 681 Phosphate transport regulator (distant homolog of PhoU) Phosphate metabolism
fig|6666666.229913.peg.1738 CDS CP016553.1 1716892 1718157 1 + 1266 Probable low-affinity inorganic phosphate transporter Phosphate metabolism
fig|6666666.229913.peg.1739 CDS CP016553.1 1718226 1718837 3 + 612 SH3 domain protein - none -
fig|6666666.229913.peg.1740 CDS CP016553.1 1718837 1720114 2 + 1278 tRNA nucleotidyltransferase (EC 2.7.7.21) (EC 2.7.7.25) Polyadenylation bacterial;
tRNA nucleotidyltransferase
fig|6666666.229913.peg.1741 CDS CP016553.1 1720176 1720802 3 + 627 Outer membrane lipoprotein LolB A Gammaproteobacteria Cluster Relating to Translation;
Lipopolysaccharide assembly;
Lipoprotein sorting system
fig|6666666.229913.peg.1742 CDS CP016553.1 1720799 1721710 2 + 912 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148) A Gammaproteobacteria Cluster Relating to Translation;
Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.229913.peg.1743 CDS CP016553.1 1721751 1722701 3 + 951 Ribose-phosphate pyrophosphokinase (EC 2.7.6.1) A Gammaproteobacteria Cluster Relating to Translation;
Pentose phosphate pathway;
Transcription repair cluster
fig|6666666.229913.peg.1744 CDS CP016553.1 1722878 1723024 2 + 147 hypothetical protein - none -
fig|6666666.229913.peg.1745 CDS CP016553.1 1723325 1724470 2 + 1146 L-lactate dehydrogenase (EC 1.1.2.3) Lactate utilization;
Respiratory dehydrogenases 1
fig|6666666.229913.peg.1746 CDS CP016553.1 1724712 1726301 3 + 1590 L-lactate permease Lactate utilization
fig|6666666.229913.peg.1747 CDS CP016553.1 1726788 1726456 -3 - 333 UPF0265 protein YeeX Broadly distributed proteins not in subsystems
fig|6666666.229913.peg.1748 CDS CP016553.1 1726813 1726929 1 + 117 hypothetical protein - none -
fig|6666666.229913.peg.1749 CDS CP016553.1 1726988 1728070 2 + 1083 Phosphoserine aminotransferase (EC 2.6.1.52) Glycine and Serine Utilization;
Pyridoxin (Vitamin B6) Biosynthesis;
Serine Biosynthesis
fig|6666666.229913.peg.1750 CDS CP016553.1 1728082 1729242 1 + 1161 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) @ Histidinol-phosphate aminotransferase (EC 2.6.1.9) Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229913.peg.1751 CDS CP016553.1 1729253 1730584 2 + 1332 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229913.peg.1752 CDS CP016553.1 1731139 1730672 -1 - 468 Ribonuclease HI (EC 3.1.26.4) CBSS-228410.1.peg.134;
CBSS-342610.3.peg.1536;
Ribonuclease H
fig|6666666.229913.peg.1753 CDS CP016553.1 1731207 1731968 3 + 762 DNA polymerase III epsilon subunit (EC 2.7.7.7) CBSS-228410.1.peg.134;
CBSS-342610.3.peg.1536
fig|6666666.229913.peg.1754 CDS CP016553.1 1732420 1732674 1 + 255 RelB/StbD replicon stabilization protein (antitoxin to RelE/StbE) Toxin-antitoxin replicon stabilization systems
fig|6666666.229913.peg.1755 CDS CP016553.1 1732664 1732954 2 + 291 RelE/StbE replicon stabilization toxin Toxin-antitoxin replicon stabilization systems
fig|6666666.229913.peg.1756 CDS CP016553.1 1733354 1733016 -2 - 339 conserved hypothetical protein - none -
fig|6666666.229913.peg.1757 CDS CP016553.1 1733695 1734138 1 + 444 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) Ammonia assimilation;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229913.peg.1758 CDS CP016553.1 1734310 1735698 1 + 1389 Putative protease - none -
fig|6666666.229913.peg.1759 CDS CP016553.1 1735820 1735933 2 + 114 hypothetical protein - none -
fig|6666666.229913.peg.1760 CDS CP016553.1 1736217 1737107 3 + 891 transcriptional regulator, putative - none -
fig|6666666.229913.peg.1761 CDS CP016553.1 1737248 1737532 2 + 285 hypothetical protein - none -
fig|6666666.229913.peg.1762 CDS CP016553.1 1737544 1738617 1 + 1074 FIG00697578: hypothetical protein - none -
fig|6666666.229913.peg.1763 CDS CP016553.1 1738664 1740319 2 + 1656 FIG00698381: hypothetical protein - none -
fig|6666666.229913.peg.1764 CDS CP016553.1 1740711 1742057 3 + 1347 FIG00849539: hypothetical protein - none -
fig|6666666.229913.peg.1765 CDS CP016553.1 1742330 1742740 2 + 411 ABC-type Fe3+-hydroxamate transport system, periplasmic component - none -
fig|6666666.229913.peg.1766 CDS CP016553.1 1742857 1743396 1 + 540 hypothetical protein - none -
fig|6666666.229913.peg.1767 CDS CP016553.1 1743487 1744578 1 + 1092 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) CBSS-211586.1.peg.2832;
Queuosine-Archaeosine Biosynthesis;
Scaffold proteins for [4Fe-4S] cluster assembly (MRP family);
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229913.peg.1768 CDS CP016553.1 1745758 1744622 -1 - 1137 Periplasmic aromatic amino acid aminotransferase beta precursor (EC 2.6.1.57) Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229913.peg.1769 CDS CP016553.1 1746227 1747378 2 + 1152 tRNA-guanine transglycosylase (EC 2.4.2.29) CBSS-211586.1.peg.2832;
Queuosine-Archaeosine Biosynthesis;
Scaffold proteins for [4Fe-4S] cluster assembly (MRP family);
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229913.peg.1770 CDS CP016553.1 1747670 1747969 2 + 300 Preprotein translocase subunit YajC (TC 3.A.5.1.1) CBSS-211586.1.peg.2832
fig|6666666.229913.peg.1771 CDS CP016553.1 1748000 1749850 2 + 1851 Protein-export membrane protein SecD (TC 3.A.5.1.1) CBSS-211586.1.peg.2832
fig|6666666.229913.peg.1772 CDS CP016553.1 1749831 1750832 3 + 1002 Protein-export membrane protein SecF (TC 3.A.5.1.1) CBSS-211586.1.peg.2832
fig|6666666.229913.peg.1773 CDS CP016553.1 1751052 1753679 3 + 2628 Iron siderophore receptor protein - none -
fig|6666666.229913.peg.1774 CDS CP016553.1 1753898 1753758 -2 - 141 hypothetical protein - none -
fig|6666666.229913.peg.1775 CDS CP016553.1 1754028 1756649 3 + 2622 Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) 5-FCL-like protein;
Butanol Biosynthesis;
Butanol Biosynthesis;
Fermentations: Lactate;
Fermentations: Mixed acid;
Fermentations: Mixed acid;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229913.peg.1776 CDS CP016553.1 1757686 1756733 -1 - 954 Inositol transport system permease protein Inositol catabolism
fig|6666666.229913.peg.1777 CDS CP016553.1 1759242 1757737 -3 - 1506 Inositol transport system ATP-binding protein Inositol catabolism
fig|6666666.229913.peg.1778 CDS CP016553.1 1760243 1759311 -2 - 933 Inositol transport system sugar-binding protein Inositol catabolism
fig|6666666.229913.peg.1779 CDS CP016553.1 1761175 1760327 -1 - 849 Inositol transport system sugar-binding protein Inositol catabolism
fig|6666666.229913.peg.1780 CDS CP016553.1 1762706 1761567 -2 - 1140 Myo-inositol 2-dehydrogenase 2 (EC 1.1.1.18) Inositol catabolism
fig|6666666.229913.peg.1781 CDS CP016553.1 1764305 1762797 -2 - 1509 Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27) Inositol catabolism
fig|6666666.229913.peg.1782 CDS CP016553.1 1764522 1764635 3 + 114 hypothetical protein - none -
fig|6666666.229913.peg.1783 CDS CP016553.1 1765045 1766391 1 + 1347 CRISPR-associated protein, Csy1 family CRISPRs
fig|6666666.229913.peg.1784 CDS CP016553.1 1766401 1767360 1 + 960 CRISPR-associated protein, Csy2 family CRISPRs
fig|6666666.229913.peg.1785 CDS CP016553.1 1767360 1768370 3 + 1011 CRISPR-associated protein, Csy3 family CRISPRs
fig|6666666.229913.peg.1786 CDS CP016553.1 1768373 1768936 2 + 564 CRISPR-associated protein, Csy4 family CRISPRs
fig|6666666.229913.peg.1787 CDS CP016553.1 1771183 1768982 -1 - 2202 CRISPR-associated helicase Cas3, Yersinia-type CRISPRs
fig|6666666.229913.peg.1788 CDS CP016553.1 1772268 1771234 -3 - 1035 CRISPR-associated helicase Cas3, Yersinia-type CRISPRs
fig|6666666.229913.peg.1789 CDS CP016553.1 1773230 1772265 -2 - 966 CRISPR-associated protein Cas1 CRISPRs
fig|6666666.229913.peg.1790 CDS CP016553.1 1773566 1773991 2 + 426 Queuosine biosynthesis QueD, PTPS-I Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229913.peg.1791 CDS CP016553.1 1773952 1774626 1 + 675 Queuosine Biosynthesis QueE Radical SAM Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229913.peg.1792 CDS CP016553.1 1774749 1775606 3 + 858 FIG137478: Hypothetical protein YbgI - none -
fig|6666666.229913.peg.1793 CDS CP016553.1 1775697 1776485 3 + 789 Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9) Fatty Acid Biosynthesis FASII
fig|6666666.229913.peg.1794 CDS CP016553.1 1776558 1778537 3 + 1980 Exoribonuclease II (EC 3.1.13.1) RNA processing and degradation, bacterial
fig|6666666.229913.peg.1795 CDS CP016553.1 1779138 1778656 -3 - 483 Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1) Oxidative stress;
Oxidative stress;
Oxidative stress
fig|6666666.229913.peg.1796 CDS CP016553.1 1779346 1779816 1 + 471 Membrane fusion component of tripartite multidrug resistance system Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria
fig|6666666.229913.peg.1797 CDS CP016553.1 1779904 1780506 1 + 603 Membrane fusion component of tripartite multidrug resistance system Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria
fig|6666666.229913.peg.1798 CDS CP016553.1 1780519 1782033 1 + 1515 Inner membrane component of tripartite multidrug resistance system Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria
fig|6666666.229913.peg.1799 CDS CP016553.1 1782177 1782458 3 + 282 HipB protein Persister Cells
fig|6666666.229913.peg.1800 CDS CP016553.1 1782591 1782412 -3 - 180 hypothetical protein - none -
fig|6666666.229913.peg.1801 CDS CP016553.1 1782833 1783075 2 + 243 HipA protein Persister Cells
fig|6666666.229913.peg.1802 CDS CP016553.1 1783965 1783072 -3 - 894 hypothetical protein - none -
fig|6666666.229913.peg.1803 CDS CP016553.1 1786896 1784032 -3 - 2865 Valyl-tRNA synthetase (EC 6.1.1.9) CBSS-208964.1.peg.3826;
tRNA aminoacylation, Val
fig|6666666.229913.peg.1804 CDS CP016553.1 1787282 1786968 -2 - 315 RNA-binding domain protein - none -
fig|6666666.229913.peg.1805 CDS CP016553.1 1787770 1787321 -1 - 450 DNA polymerase III chi subunit (EC 2.7.7.7) CBSS-208964.1.peg.3826
fig|6666666.229913.peg.1806 CDS CP016553.1 1787980 1789374 1 + 1395 Fumarate hydratase class II (EC 4.2.1.2) TCA Cycle
fig|6666666.229913.peg.1807 CDS CP016553.1 1789478 1790083 2 + 606 FIG026291: Hypothetical periplasmic protein - none -
fig|6666666.229913.peg.1808 CDS CP016553.1 1790326 1790135 -1 - 192 hypothetical protein - none -
fig|6666666.229913.peg.1809 CDS CP016553.1 1791212 1790379 -2 - 834 Ribosomal protein S6 glutaminyl transferase Ribosome biogenesis bacterial
fig|6666666.229913.peg.1810 CDS CP016553.1 1792037 1791303 -2 - 735 Oxygen-insensitive NADPH nitroreductase (EC 1.-.-.-) - none -
fig|6666666.229913.peg.1811 CDS CP016553.1 1792164 1792427 3 + 264 Glutaredoxin 1 Glutaredoxins;
Glutathione: Redox cycle
fig|6666666.229913.peg.1812 CDS CP016553.1 1792885 1792691 -1 - 195 Beta-galactosidase (EC 3.2.1.23) Galactosylceramide and Sulfatide metabolism;
Lactose and Galactose Uptake and Utilization;
Lactose utilization
fig|6666666.229913.peg.1813 CDS CP016553.1 1793180 1794394 2 + 1215 Tyrosine-specific transport protein - none -
fig|6666666.229913.peg.1814 CDS CP016553.1 1795330 1794464 -1 - 867 hypothetical protein - none -
fig|6666666.229913.peg.1815 CDS CP016553.1 1795674 1795330 -3 - 345 hypothetical protein - none -
fig|6666666.229913.peg.1816 CDS CP016553.1 1797765 1795687 -3 - 2079 hypothetical protein - none -
fig|6666666.229913.peg.1817 CDS CP016553.1 1798154 1797786 -2 - 369 hypothetical protein - none -
fig|6666666.229913.peg.1818 CDS CP016553.1 1799167 1798211 -1 - 957 hypothetical protein - none -
fig|6666666.229913.peg.1819 CDS CP016553.1 1800530 1799835 -2 - 696 L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) L-ascorbate utilization (and related gene clusters)
fig|6666666.229913.peg.1820 CDS CP016553.1 1801384 1800524 -1 - 861 L-xylulose 5-phosphate 3-epimerase (EC 5.1.3.-) L-ascorbate utilization (and related gene clusters)
fig|6666666.229913.peg.1821 CDS CP016553.1 1802174 1801425 -2 - 750 Ascorbate utilization transcriptional regulator UlaR, HTH-type L-ascorbate utilization (and related gene clusters)
fig|6666666.229913.peg.1822 CDS CP016553.1 1803357 1802266 -3 - 1092 Probable L-ascorbate-6-phosphate lactonase UlaG (EC 3.1.1.-) (L-ascorbate utilization protein G) L-ascorbate utilization (and related gene clusters)
fig|6666666.229913.peg.1823 CDS CP016553.1 1803703 1805475 1 + 1773 Ascorbate-specific PTS system, EIIC component L-ascorbate utilization (and related gene clusters)
fig|6666666.229913.peg.1824 CDS CP016553.1 1805530 1805991 1 + 462 Ascorbate-specific PTS system, EIIA component (EC 2.7.1.-) L-ascorbate utilization (and related gene clusters)
fig|6666666.229913.peg.1825 CDS CP016553.1 1806068 1806742 2 + 675 3-keto-L-gulonate 6-phosphate decarboxylase L-ascorbate utilization (and related gene clusters)
fig|6666666.229913.peg.1826 CDS CP016553.1 1807464 1806811 -3 - 654 hypothetical protein - none -
fig|6666666.229913.peg.1827 CDS CP016553.1 1808667 1807474 -3 - 1194 hypothetical protein - none -
fig|6666666.229913.peg.1828 CDS CP016553.1 1809834 1808704 -3 - 1131 hypothetical protein - none -
fig|6666666.229913.peg.1829 CDS CP016553.1 1810145 1809957 -2 - 189 VgrG-3 protein - none -
fig|6666666.229913.peg.1830 CDS CP016553.1 1810526 1811365 2 + 840 Predicted transcriptional regulator of the myo-inositol catabolic operon Inositol catabolism
fig|6666666.229913.peg.1831 CDS CP016553.1 1813312 1811402 -1 - 1911 5-keto-2-deoxygluconokinase (EC 2.7.1.92) / uncharacterized domain Inositol catabolism;
Inositol catabolism
fig|6666666.229913.peg.1832 CDS CP016553.1 1813623 1815569 3 + 1947 Epi-inositol hydrolase (EC 3.7.1.-) Inositol catabolism
fig|6666666.229913.peg.1833 CDS CP016553.1 1815624 1816520 3 + 897 Inosose dehydratase (EC 4.2.1.44) Inositol catabolism
fig|6666666.229913.peg.1834 CDS CP016553.1 1816523 1817533 2 + 1011 Myo-inositol 2-dehydrogenase 1 (EC 1.1.1.18) Inositol catabolism
fig|6666666.229913.peg.1835 CDS CP016553.1 1818149 1817637 -2 - 513 Mannitol operon repressor Mannitol Utilization
fig|6666666.229913.peg.1836 CDS CP016553.1 1819375 1818227 -1 - 1149 Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17) Mannitol Utilization
fig|6666666.229913.peg.1837 CDS CP016553.1 1821333 1819453 -3 - 1881 PTS system, mannitol-specific IIC component (EC 2.7.1.69) / PTS system, mannitol-specific IIB component (EC 2.7.1.69) / PTS system, mannitol-specific IIA component (EC 2.7.1.69) Mannitol Utilization;
Mannitol Utilization;
Mannitol Utilization
fig|6666666.229913.peg.1838 CDS CP016553.1 1823177 1821744 -2 - 1434 Microcin H47 secretion protein - none -
fig|6666666.229913.peg.1839 CDS CP016553.1 1825315 1823192 -1 - 2124 Methionine ABC transporter ATP-binding protein Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229913.peg.1840 CDS CP016553.1 1828551 1825384 -3 - 3168 bifunctional hemolysin-adenylate cyclase precursor cAMP signaling in bacteria
fig|6666666.229913.peg.1841 CDS CP016553.1 1829070 1828564 -3 - 507 RTX toxin activating lysine-acyltransferase (EC 2.3.1.-) - none -
fig|6666666.229913.peg.1842 CDS CP016553.1 1831439 1830177 -2 - 1263 Serine hydroxymethyltransferase (EC 2.1.2.1) 5-FCL-like protein;
Glycine Biosynthesis;
Glycine and Serine Utilization;
Serine-glyoxylate cycle;
Serine Biosynthesis;
YrdC-YciO-Sua5 protein family
fig|6666666.229913.peg.1843 CDS CP016553.1 1832116 1831574 -1 - 543 hypothetical protein - none -
fig|6666666.229913.peg.1844 CDS CP016553.1 1832493 1832353 -3 - 141 hypothetical protein - none -
fig|6666666.229913.peg.1845 CDS CP016553.1 1832645 1832496 -2 - 150 hypothetical protein - none -
fig|6666666.229913.peg.1846 CDS CP016553.1 1833736 1832732 -1 - 1005 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) RNA methylation
fig|6666666.229913.peg.1847 CDS CP016553.1 1833792 1834241 3 + 450 DNA polymerase III psi subunit (EC 2.7.7.7) - none -
fig|6666666.229913.peg.1848 CDS CP016553.1 1834251 1834694 3 + 444 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Ribosome biogenesis bacterial;
YrdC-YciO-Sua5 protein family
fig|6666666.229913.peg.1849 CDS CP016553.1 1838085 1834696 -3 - 3390 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) DNA repair, bacterial RecBCD pathway
fig|6666666.229913.peg.1850 CDS CP016553.1 1838433 1838131 -3 - 303 FIG00696353: hypothetical protein - none -
fig|6666666.229913.peg.1851 CDS CP016553.1 1839103 1838408 -1 - 696 FIG00696574: hypothetical protein - none -
fig|6666666.229913.peg.1852 CDS CP016553.1 1839816 1839100 -3 - 717 Type II secretory pathway, component PulJ - none -
fig|6666666.229913.peg.1853 CDS CP016553.1 1840447 1839830 -1 - 618 Type II secretory pathway, pseudopilin PulG - none -
fig|6666666.229913.peg.1854 CDS CP016553.1 1841523 1841056 -3 - 468 18K peptidoglycan-associated outer membrane lipoprotein; Peptidoglycan-associated lipoprotein precursor; Outer membrane protein P6; OmpA/MotB precursor Ton and Tol transport systems
fig|6666666.229913.peg.1855 CDS CP016553.1 1842737 1841538 -2 - 1200 tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins Ton and Tol transport systems
fig|6666666.229913.peg.1856 CDS CP016553.1 1844001 1842853 -3 - 1149 TolA protein Ton and Tol transport systems
fig|6666666.229913.peg.1857 CDS CP016553.1 1844440 1844018 -1 - 423 Tol biopolymer transport system, TolR protein Ton and Tol transport systems
fig|6666666.229913.peg.1858 CDS CP016553.1 1845215 1844526 -2 - 690 MotA/TolQ/ExbB proton channel family protein Ton and Tol transport systems
fig|6666666.229913.peg.1859 CDS CP016553.1 1845649 1845245 -1 - 405 4-hydroxybenzoyl-CoA thioesterase family active site Ton and Tol transport systems
fig|6666666.229913.peg.1860 CDS CP016553.1 1847303 1846167 -2 - 1137 Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229913.peg.1861 CDS CP016553.1 1848778 1847318 -1 - 1461 Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229913.peg.1862 CDS CP016553.1 1849335 1849646 3 + 312 Chromosome segregation ATPases - none -
fig|6666666.229913.peg.1863 CDS CP016553.1 1850719 1849700 -1 - 1020 Holliday junction DNA helicase RuvB RuvABC plus a hypothetical
fig|6666666.229913.peg.1864 CDS CP016553.1 1851342 1850728 -3 - 615 Holliday junction DNA helicase RuvA RuvABC plus a hypothetical
fig|6666666.229913.peg.1865 CDS CP016553.1 1851978 1851406 -3 - 573 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) RuvABC plus a hypothetical
fig|6666666.229913.peg.1866 CDS CP016553.1 1852444 1852034 -1 - 411 excinuclease ABC subunit A - none -
fig|6666666.229913.peg.1867 CDS CP016553.1 1853196 1852456 -3 - 741 FIG000859: hypothetical protein YebC Riboflavin, FMN and FAD metabolism in plants;
RuvABC plus a hypothetical
fig|6666666.229913.peg.1868 CDS CP016553.1 1853601 1853230 -3 - 372 Dihydroneopterin triphosphate pyrophosphohydrolase type 2 (nudB) Folate Biosynthesis
fig|6666666.229913.peg.1869 CDS CP016553.1 1855050 1853782 -3 - 1269 Mn2+ and Fe2+ transporters of the NRAMP family - none -
fig|6666666.229913.peg.1870 CDS CP016553.1 1855324 1855698 1 + 375 hypothetical protein - none -
fig|6666666.229913.peg.1871 CDS CP016553.1 1855740 1855997 3 + 258 Mobile element protein - none -
fig|6666666.229913.peg.1872 CDS CP016553.1 1855991 1856500 2 + 510 Mobile element protein - none -
fig|6666666.229913.peg.1873 CDS CP016553.1 1858477 1856699 -1 - 1779 Aspartyl-tRNA synthetase (EC 6.1.1.12) tRNA aminoacylation, Asp and Asn
fig|6666666.229913.peg.1874 CDS CP016553.1 1858685 1859212 2 + 528 membrane protein, putative - none -
fig|6666666.229913.peg.1875 CDS CP016553.1 1859284 1860009 1 + 726 tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229913.peg.1876 CDS CP016553.1 1862656 1860089 -1 - 2568 FIG00362583: hypothetical protein - none -
fig|6666666.229913.peg.1877 CDS CP016553.1 1864130 1862799 -2 - 1332 Glycerol-3-phosphate transporter - none -
fig|6666666.229913.peg.1878 CDS CP016553.1 1864531 1866483 1 + 1953 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229913.peg.1879 CDS CP016553.1 1866642 1867049 3 + 408 Lactoylglutathione lyase (EC 4.4.1.5) Glutathione: Non-redox reactions;
Methylglyoxal Metabolism
fig|6666666.229913.peg.1880 CDS CP016553.1 1867136 1867789 2 + 654 Ribonuclease T (EC 3.1.13.-) tRNA processing
fig|6666666.229913.peg.1881 CDS CP016553.1 1868141 1869493 2 + 1353 Histidine permease YuiF - none -
fig|6666666.229913.peg.1882 CDS CP016553.1 1869557 1870123 2 + 567 Primosomal replication protein N@1@1 - none -
fig|6666666.229913.peg.1883 CDS CP016553.1 1871605 1870181 -1 - 1425 tRNA-i(6)A37 methylthiotransferase Methylthiotransferases;
tRNA-methylthiotransferase containing cluster;
tRNA modification Archaea;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229913.peg.1884 CDS CP016553.1 1871713 1871832 1 + 120 hypothetical protein - none -
fig|6666666.229913.peg.1885 CDS CP016553.1 1871942 1872091 2 + 150 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-) CBSS-87626.3.peg.3639;
Ubiquinone Biosynthesis
fig|6666666.229913.peg.1886 CDS CP016553.1 1872838 1872107 -1 - 732 FIG053235: Diacylglucosamine hydrolase like Llipid A biosynthesis cluster
fig|6666666.229913.peg.1887 CDS CP016553.1 1873811 1872840 -2 - 972 Octaprenyl diphosphate synthase (EC 2.5.1.90) Isoprenoinds for Quinones;
Polyprenyl Diphosphate Biosynthesis
fig|6666666.229913.peg.1888 CDS CP016553.1 1874077 1874388 1 + 312 LSU ribosomal protein L21p CBSS-176279.3.peg.868
fig|6666666.229913.peg.1889 CDS CP016553.1 1874409 1874666 3 + 258 LSU ribosomal protein L27p CBSS-176279.3.peg.868
fig|6666666.229913.peg.1890 CDS CP016553.1 1874737 1875669 1 + 933 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229913.peg.1891 CDS CP016553.1 1875747 1876664 3 + 918 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229913.peg.1892 CDS CP016553.1 1876701 1877876 3 + 1176 GTP-binding protein Obg CBSS-176279.3.peg.868;
Universal GTPases
fig|6666666.229913.peg.1893 CDS CP016553.1 1877992 1877873 -1 - 120 tmRNA-binding protein SmpB Heat shock dnaK gene cluster extended;
Translation termination factors bacterial
fig|6666666.229913.peg.1894 CDS CP016553.1 1878426 1877944 -3 - 483 tmRNA-binding protein SmpB Heat shock dnaK gene cluster extended;
Translation termination factors bacterial
fig|6666666.229913.peg.1895 CDS CP016553.1 1878772 1878635 -1 - 138 hypothetical protein - none -
fig|6666666.229913.peg.1896 CDS CP016553.1 1878795 1880378 3 + 1584 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229913.peg.1897 CDS CP016553.1 1880521 1881183 1 + 663 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229913.peg.1898 CDS CP016553.1 1881159 1881326 3 + 168 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229913.peg.1899 CDS CP016553.1 1881295 1881441 1 + 147 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229913.peg.1900 CDS CP016553.1 1881451 1882389 1 + 939 Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229913.peg.1901 CDS CP016553.1 1882399 1883382 1 + 984 Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229913.peg.1902 CDS CP016553.1 1883379 1884377 3 + 999 Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229913.peg.1903 CDS CP016553.1 1885192 1884485 -1 - 708 Aerobic respiration control protein arcA - none -
fig|6666666.229913.peg.1904 CDS CP016553.1 1885594 1885454 -1 - 141 LSU ribosomal protein L36p - none -
fig|6666666.229913.peg.1905 CDS CP016553.1 1885870 1885664 -1 - 207 LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-independent - none -
fig|6666666.229913.peg.1906 CDS CP016553.1 1886650 1886081 -1 - 570 Lysine decarboxylase family - none -
fig|6666666.229913.peg.1907 CDS CP016553.1 1886814 1888583 3 + 1770 Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8) Biogenesis of c-type cytochromes;
Periplasmic disulfide interchange
fig|6666666.229913.peg.1908 CDS CP016553.1 1888685 1888572 -2 - 114 hypothetical protein - none -
fig|6666666.229913.peg.1909 CDS CP016553.1 1888663 1889052 1 + 390 INTEGRAL MEMBRANE PROTEIN (Rhomboid family) - none -
fig|6666666.229913.peg.1910 CDS CP016553.1 1892382 1889491 -3 - 2892 Ribonuclease E (EC 3.1.26.12) RNA processing and degradation, bacterial;
Ribosome biogenesis bacterial
fig|6666666.229913.peg.1911 CDS CP016553.1 1892617 1892739 1 + 123 hypothetical protein - none -
fig|6666666.229913.peg.1912 CDS CP016553.1 1892849 1893808 2 + 960 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) RNA pseudouridine syntheses;
Ribosome biogenesis bacterial
fig|6666666.229913.peg.1913 CDS CP016553.1 1894222 1894007 -1 - 216 Thioredoxin - none -
fig|6666666.229913.peg.1914 CDS CP016553.1 1895425 1894430 -1 - 996 D-lactate dehydrogenase (EC 1.1.1.28) Fermentations: Lactate;
Fermentations: Mixed acid
fig|6666666.229913.peg.1915 CDS CP016553.1 1896618 1895449 -3 - 1170 Cystathionine gamma-synthase (EC 2.5.1.48) Methionine Biosynthesis
fig|6666666.229913.peg.1916 CDS CP016553.1 1897267 1897061 -1 - 207 Tfp pilus assembly protein, pilus retraction ATPase PilT - none -
fig|6666666.229913.peg.1917 CDS CP016553.1 1897604 1897479 -2 - 126 hypothetical protein - none -
fig|6666666.229913.peg.1918 CDS CP016553.1 1897594 1897785 1 + 192 Mobile element protein - none -
fig|6666666.229913.peg.1919 CDS CP016553.1 1899108 1897933 -3 - 1176 hypothetical protein - none -
fig|6666666.229913.peg.1920 CDS CP016553.1 1901838 1899112 -3 - 2727 hypothetical protein - none -
fig|6666666.229913.peg.1921 CDS CP016553.1 1903479 1902067 -3 - 1413 hypothetical protein - none -
fig|6666666.229913.peg.1922 CDS CP016553.1 1903796 1903921 2 + 126 Mobile element protein - none -
fig|6666666.229913.peg.1923 CDS CP016553.1 1903923 1904123 3 + 201 Mobile element protein - none -
fig|6666666.229913.peg.1924 CDS CP016553.1 1904378 1904527 2 + 150 hypothetical protein - none -
fig|6666666.229913.peg.1925 CDS CP016553.1 1904904 1905062 3 + 159 hypothetical protein - none -
fig|6666666.229913.peg.1926 CDS CP016553.1 1906018 1905218 -1 - 801 Inositol-1-monophosphatase (EC 3.1.3.25) - none -
fig|6666666.229913.peg.1927 CDS CP016553.1 1906169 1906909 2 + 741 tRNA:Cm32/Um32 methyltransferase RNA methylation;
tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229913.peg.1928 CDS CP016553.1 1906971 1907444 3 + 474 Iron-sulfur cluster regulator IscR Alanine biosynthesis;
Rrf2 family transcriptional regulators
fig|6666666.229913.peg.1929 CDS CP016553.1 1907498 1908712 2 + 1215 Cysteine desulfurase (EC 2.8.1.7), IscS subfamily Alanine biosynthesis;
Thiamin biosynthesis;
mnm5U34 biosynthesis bacteria;
tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229913.peg.1930 CDS CP016553.1 1908772 1909155 1 + 384 Iron-sulfur cluster assembly scaffold protein IscU Alanine biosynthesis;
tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229913.peg.1931 CDS CP016553.1 1909287 1909610 3 + 324 Iron binding protein IscA for iron-sulfur cluster assembly Alanine biosynthesis;
tRNA modification Bacteria
fig|6666666.229913.peg.1932 CDS CP016553.1 1909622 1910143 2 + 522 Chaperone protein HscB Protein chaperones;
tRNA modification Bacteria
fig|6666666.229913.peg.1933 CDS CP016553.1 1910164 1912023 1 + 1860 Chaperone protein HscA Alanine biosynthesis;
Protein chaperones;
tRNA modification Bacteria
fig|6666666.229913.peg.1934 CDS CP016553.1 1912035 1912376 3 + 342 Ferredoxin, 2Fe-2S Alanine biosynthesis;
Soluble cytochromes and functionally related electron carriers;
tRNA modification Bacteria
fig|6666666.229913.peg.1935 CDS CP016553.1 1912376 1912570 2 + 195 Believed to be involved in assembly of Fe-S clusters tRNA modification Bacteria
fig|6666666.229913.peg.1936 CDS CP016553.1 1914764 1912704 -2 - 2061 Methionyl-tRNA synthetase (EC 6.1.1.10) Scaffold proteins for [4Fe-4S] cluster assembly (MRP family);
tRNA aminoacylation, Met
fig|6666666.229913.peg.1937 CDS CP016553.1 1914937 1916049 1 + 1113 Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like Scaffold proteins for [4Fe-4S] cluster assembly (MRP family)
fig|6666666.229913.peg.1938 CDS CP016553.1 1916330 1916500 2 + 171 hypothetical protein - none -
fig|6666666.229913.peg.1939 CDS CP016553.1 1916497 1918593 1 + 2097 VgrG-3 protein - none -
fig|6666666.229913.peg.1940 CDS CP016553.1 1918578 1919480 3 + 903 hypothetical protein - none -
fig|6666666.229913.peg.1941 CDS CP016553.1 1919903 1921117 2 + 1215 Probable phospholipase protein - none -
fig|6666666.229913.peg.1942 CDS CP016553.1 1921153 1921875 1 + 723 miscellaneous; hypothetical/partial homology - none -
fig|6666666.229913.peg.1943 CDS CP016553.1 1922082 1922267 3 + 186 hypothetical protein - none -
fig|6666666.229913.peg.1944 CDS CP016553.1 1922577 1922975 3 + 399 hypothetical protein - none -
fig|6666666.229913.peg.1945 CDS CP016553.1 1923728 1923201 -2 - 528 tRNA-specific adenosine-34 deaminase (EC 3.5.4.-) tRNA modification Bacteria;
tRNA processing;
tRNAmodification position 34
fig|6666666.229913.peg.1946 CDS CP016553.1 1924904 1924053 -2 - 852 Thymidylate synthase (EC 2.1.1.45) Folate Biosynthesis;
pyrimidine conversions
fig|6666666.229913.peg.1947 CDS CP016553.1 1925698 1924901 -1 - 798 Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-) Lipoprotein Biosynthesis
fig|6666666.229913.peg.1948 CDS CP016553.1 1926504 1925707 -3 - 798 Protein of unknown function DUF81 - none -
fig|6666666.229913.peg.1949 CDS CP016553.1 1927106 1926507 -2 - 600 Adenosine (5@1)-pentaphospho-(5@1@1)-adenosine pyrophosphohydrolase (EC 3.6.1.-) CBSS-224911.1.peg.435;
CBSS-364106.7.peg.3204;
Nudix proteins (nucleoside triphosphate hydrolases);
Phosphoglycerate mutase protein family
fig|6666666.229913.peg.1950 CDS CP016553.1 1927326 1927745 3 + 420 Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229913.peg.1951 CDS CP016553.1 1927756 1929264 1 + 1509 Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229913.peg.1952 CDS CP016553.1 1929261 1930226 3 + 966 Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229913.peg.1953 CDS CP016553.1 1930248 1931120 3 + 873 Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229913.peg.1954 CDS CP016553.1 1931202 1932134 3 + 933 Ribokinase (EC 2.7.1.15) D-ribose utilization;
Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.229913.peg.1955 CDS CP016553.1 1932442 1932233 -1 - 210 Cold shock protein CspA Cold shock, CspA family of proteins
fig|6666666.229913.peg.1956 CDS CP016553.1 1934333 1932888 -2 - 1446 Glutamyl-tRNA synthetase (EC 6.1.1.17) Heme and Siroheme Biosynthesis;
tRNA aminoacylation, Glu and Gln
fig|6666666.229913.peg.1957 CDS CP016553.1 1935024 1935812 3 + 789 Mannosyltransferase OCH1 and related enzymes - none -
fig|6666666.229913.peg.1958 CDS CP016553.1 1935925 1937295 1 + 1371 Argininosuccinate lyase (EC 4.3.2.1) - none -
fig|6666666.229913.peg.1959 CDS CP016553.1 1937597 1938946 2 + 1350 NADP-specific glutamate dehydrogenase (EC 1.4.1.4) Arginine and Ornithine Degradation;
Glutamate dehydrogenases;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Proline Synthesis
fig|6666666.229913.peg.1960 CDS CP016553.1 1939436 1940890 2 + 1455 Catalase (EC 1.11.1.6) Oxidative stress;
Protection from Reactive Oxygen Species
fig|6666666.229913.peg.1961 CDS CP016553.1 1941167 1942492 2 + 1326 hypothetical protein - none -
fig|6666666.229913.peg.1962 CDS CP016553.1 1942485 1944719 3 + 2235 hypothetical protein - none -
fig|6666666.229913.peg.1963 CDS CP016553.1 1944698 1945882 2 + 1185 hypothetical protein - none -
fig|6666666.229913.peg.1964 CDS CP016553.1 1949433 1945957 -3 - 3477 DNA polymerase III alpha subunit (EC 2.7.7.7) - none -
fig|6666666.229913.peg.1965 CDS CP016553.1 1949398 1949577 1 + 180 hypothetical protein - none -
fig|6666666.229913.peg.1966 CDS CP016553.1 1949632 1951419 1 + 1788 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) Biotin biosynthesis;
Biotin synthesis cluster
fig|6666666.229913.peg.1967 CDS CP016553.1 1951436 1951552 2 + 117 hypothetical protein - none -
fig|6666666.229913.peg.1968 CDS CP016553.1 1952616 1956803 3 + 4188 Autotransporter adhesin - none -
fig|6666666.229913.peg.1969 CDS CP016553.1 1957056 1959182 3 + 2127 Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) Ribonucleotide reduction
fig|6666666.229913.peg.1970 CDS CP016553.1 1959363 1959482 3 + 120 hypothetical protein - none -
fig|6666666.229913.peg.1971 CDS CP016553.1 1959784 1960251 1 + 468 Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) Ribonucleotide reduction
fig|6666666.229913.peg.1972 CDS CP016553.1 1961066 1960278 -2 - 789 Putative deoxyribonuclease YjjV Deoxyribose and Deoxynucleoside Catabolism;
YcfH
fig|6666666.229913.peg.1973 CDS CP016553.1 1961350 1961069 -1 - 282 hypothetical protein - none -
fig|6666666.229913.peg.1974 CDS CP016553.1 1961498 1961343 -2 - 156 hypothetical protein - none -
fig|6666666.229913.peg.1975 CDS CP016553.1 1962104 1961592 -2 - 513 Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase;
Queuosine-Archaeosine Biosynthesis
fig|6666666.229913.peg.1976 CDS CP016553.1 1962174 1963583 3 + 1410 Cysteinyl-tRNA synthetase (EC 6.1.1.16) tRNA aminoacylation, Cys
fig|6666666.229913.peg.1977 CDS CP016553.1 1964472 1963915 -3 - 558 hypothetical protein - none -
fig|6666666.229913.peg.1978 CDS CP016553.1 1965287 1964916 -2 - 372 hypothetical protein - none -
fig|6666666.229913.peg.1979 CDS CP016553.1 1967386 1965290 -1 - 2097 hypothetical protein - none -
fig|6666666.229913.peg.1980 CDS CP016553.1 1967698 1967549 -1 - 150 hypothetical protein - none -
fig|6666666.229913.peg.1981 CDS CP016553.1 1969200 1967788 -3 - 1413 hypothetical protein - none -
fig|6666666.229913.peg.1983 CDS CP016553.1 1975558 1975355 -1 - 204 Osmotically inducible lipoprotein B precursor Osmotic stress cluster
fig|6666666.229913.peg.1984 CDS CP016553.1 1976577 1975645 -3 - 933 Biotin-protein ligase (EC 6.3.4.15) Biotin biosynthesis;
Biotin synthesis cluster
fig|6666666.229913.peg.1985 CDS CP016553.1 1976719 1978185 1 + 1467 Inosine-5@1-monophosphate dehydrogenase (EC 1.1.1.205) / CBS domain Purine conversions;
Purine salvage cluster
fig|6666666.229913.peg.1986 CDS CP016553.1 1978487 1978660 2 + 174 hypothetical protein - none -
fig|6666666.229913.peg.1987 CDS CP016553.1 1979342 1978893 -2 - 450 ImpA - none -
fig|6666666.229913.peg.1988 CDS CP016553.1 1979540 1979704 2 + 165 hypothetical protein - none -
fig|6666666.229913.peg.1989 CDS CP016553.1 1979821 1980195 1 + 375 hypothetical protein - none -
fig|6666666.229913.peg.1990 CDS CP016553.1 1980237 1980494 3 + 258 Mobile element protein - none -
fig|6666666.229913.peg.1991 CDS CP016553.1 1980488 1980997 2 + 510 Mobile element protein - none -
fig|6666666.229913.peg.1992 CDS CP016553.1 1981036 1982118 1 + 1083 DNA polymerase IV (EC 2.7.7.7) DNA repair, bacterial
fig|6666666.229913.peg.1993 CDS CP016553.1 1982288 1983115 2 + 828 Dihydropteroate synthase (EC 2.5.1.15) Folate Biosynthesis;
Folate biosynthesis cluster
fig|6666666.229913.peg.1994 CDS CP016553.1 1983143 1984480 2 + 1338 Phosphoglucosamine mutase (EC 5.4.2.10) Sialic Acid Metabolism;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229913.peg.1995 CDS CP016553.1 1984493 1984960 2 + 468 Phosphohistidine phosphatase SixA - none -
fig|6666666.229913.peg.1996 CDS CP016553.1 1985184 1985729 3 + 546 FIG00696317: hypothetical protein - none -
fig|6666666.229913.peg.1997 CDS CP016553.1 1986413 1985751 -2 - 663 Septum site-determining protein MinC Bacterial Cell Division;
Bacterial Cytoskeleton;
Septum site-determining cluster Min
fig|6666666.229913.peg.1998 CDS CP016553.1 1986497 1986748 2 + 252 Protein YcgL CBSS-243277.1.peg.4359
fig|6666666.229913.peg.1999 CDS CP016553.1 1987655 1987146 -2 - 510 probable lipoprotein NlpC - none -
fig|6666666.229913.peg.2000 CDS CP016553.1 1988689 1987835 -1 - 855 2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase (EC 2.5.1.55) A Gammaproteobacteria Cluster Relating to Translation;
KDO2-Lipid A biosynthesis
fig|6666666.229913.peg.2001 CDS CP016553.1 1989598 1988699 -1 - 900 Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2 A Gammaproteobacteria Cluster Relating to Translation;
CBSS-216600.3.peg.802;
Translation termination factors bacterial;
YrdC-YciO-Sua5 protein family
fig|6666666.229913.peg.2002 CDS CP016553.1 1990720 1989638 -1 - 1083 Peptide chain release factor 1 A Gammaproteobacteria Cluster Relating to Translation;
CBSS-216600.3.peg.802;
Translation termination factors bacterial;
YrdC-YciO-Sua5 protein family
fig|6666666.229913.peg.2003 CDS CP016553.1 1991316 1990861 -3 - 456 Outer membrane lipoprotein - none -
fig|6666666.229913.peg.2004 CDS CP016553.1 1991945 1991358 -2 - 588 Protein yecM - none -
fig|6666666.229913.peg.2005 CDS CP016553.1 1992042 1993775 3 + 1734 Arginyl-tRNA synthetase (EC 6.1.1.19) tRNA aminoacylation, Arg
fig|6666666.229913.peg.2006 CDS CP016553.1 1995352 1994381 -1 - 972 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch;
Threonine and Homoserine Biosynthesis
fig|6666666.229913.peg.2007 CDS CP016553.1 1995413 1995892 2 + 480 Cys-tRNA(Pro) deacylase YbaK tRNA aminoacylation, Pro
fig|6666666.229913.peg.2008 CDS CP016553.1 1997751 1996006 -3 - 1746 Ferrichrome-iron receptor - none -
fig|6666666.229913.peg.2009 CDS CP016553.1 1999943 1997805 -2 - 2139 Ferrichrome-iron receptor - none -
fig|6666666.229913.peg.2010 CDS CP016553.1 2001612 2000215 -3 - 1398 Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps Multidrug Resistance Efflux Pumps;
Riboflavin, FMN and FAD metabolism in plants
fig|6666666.229913.peg.2011 CDS CP016553.1 2001639 2002253 3 + 615 Riboflavin synthase eubacterial/eukaryotic (EC 2.5.1.9) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster;
riboflavin to FAD
fig|6666666.229913.peg.2012 CDS CP016553.1 2002582 2002286 -1 - 297 FIG045511: hypothetical antitoxin (to FIG022160: hypothetical toxin) - none -
fig|6666666.229913.peg.2013 CDS CP016553.1 2002878 2002579 -3 - 300 Phage-related protein - none -
fig|6666666.229913.peg.2014 CDS CP016553.1 2003046 2003348 3 + 303 FIG004454: RNA binding protein - none -
fig|6666666.229913.peg.2015 CDS CP016553.1 2003900 2003424 -2 - 477 Transcription elongation factor GreA Transcription factors bacterial
fig|6666666.229913.peg.2016 CDS CP016553.1 2004060 2005502 3 + 1443 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) Metallocarboxypeptidases (EC 3.4.17.-);
Murein Hydrolases;
Peptidoglycan Biosynthesis
fig|6666666.229913.peg.2017 CDS CP016553.1 2006259 2005603 -3 - 657 GTP cyclohydrolase I (EC 3.5.4.16) type 1 Folate Biosynthesis;
Folate biosynthesis cluster;
Molybdenum cofactor biosynthesis;
Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229913.peg.2018 CDS CP016553.1 2006388 2007602 3 + 1215 Molybdopterin biosynthesis protein MoeA Molybdenum cofactor biosynthesis
fig|6666666.229913.peg.2019 CDS CP016553.1 2007618 2008349 3 + 732 Molybdopterin biosynthesis protein MoeB Molybdenum cofactor biosynthesis
fig|6666666.229913.peg.2020 CDS CP016553.1 2009069 2009926 2 + 858 FIG000875: Thioredoxin domain-containing protein EC-YbbN - none -
fig|6666666.229913.peg.2021 CDS CP016553.1 2009986 2010939 1 + 954 Thioredoxin reductase (EC 1.8.1.9) Thioredoxin-disulfide reductase;
pyrimidine conversions
fig|6666666.229913.peg.2022 CDS CP016553.1 2010973 2012808 1 + 1836 Transport ATP-binding protein CydD Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229913.peg.2023 CDS CP016553.1 2012808 2014541 3 + 1734 Transport ATP-binding protein CydC Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229913.peg.2024 CDS CP016553.1 2014792 2015724 1 + 933 Acyl-CoA thioesterase II (EC 3.1.2.-) Acyl-CoA thioesterase II
fig|6666666.229913.peg.2025 CDS CP016553.1 2015936 2015808 -2 - 129 hypothetical protein - none -
fig|6666666.229913.peg.2026 CDS CP016553.1 2016718 2015933 -1 - 786 serine/threonine protein kinase - none -
fig|6666666.229913.peg.2027 CDS CP016553.1 2017260 2016739 -3 - 522 unknown - none -
fig|6666666.229913.peg.2028 CDS CP016553.1 2017462 2017788 1 + 327 Putative lipoprotein yceB precursor - none -
fig|6666666.229913.peg.2029 CDS CP016553.1 2017811 2018047 2 + 237 Putative lipoprotein yceB precursor - none -
fig|6666666.229913.peg.2030 CDS CP016553.1 2019018 2018104 -3 - 915 ROK family Glucokinase with ambiguous substrate specificity - none -
fig|6666666.229913.peg.2031 CDS CP016553.1 2019803 2019069 -2 - 735 Phosphatidylglycerophosphatase B (EC 3.1.3.27) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Osmotic stress cluster
fig|6666666.229913.peg.2032 CDS CP016553.1 2019886 2020539 1 + 654 GTP cyclohydrolase II (EC 3.5.4.25) Molybdenum cofactor biosynthesis;
Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster
fig|6666666.229913.peg.2033 CDS CP016553.1 2020814 2021554 2 + 741 FIG00698611: hypothetical protein - none -
fig|6666666.229913.peg.2034 CDS CP016553.1 2022400 2021858 -1 - 543 dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) Capsular heptose biosynthesis;
Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229913.peg.2035 CDS CP016553.1 2023281 2022403 -3 - 879 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229913.peg.2036 CDS CP016553.1 2024154 2023282 -3 - 873 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229913.peg.2037 CDS CP016553.1 2025299 2024232 -2 - 1068 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229913.peg.2038 CDS CP016553.1 2025678 2025538 -3 - 141 Phosphomannomutase (EC 5.4.2.8) Mannose Metabolism
fig|6666666.229913.peg.2039 CDS CP016553.1 2027661 2026351 -3 - 1311 Undecaprenyl-phosphate galactosephosphotransferase (EC 2.7.8.6) - none -
fig|6666666.229913.peg.2040 CDS CP016553.1 2028694 2027669 -1 - 1026 Mannose-1-phosphate guanylyltransferase (GDP) (EC 2.7.7.22) Mannose Metabolism
fig|6666666.229913.peg.2041 CDS CP016553.1 2029809 2028691 -3 - 1119 Glycosyltransferase - none -
fig|6666666.229913.peg.2042 CDS CP016553.1 2031099 2029921 -3 - 1179 Glycosyltransferase - none -
fig|6666666.229913.peg.2043 CDS CP016553.1 2032348 2031068 -1 - 1281 hypothetical protein - none -
fig|6666666.229913.peg.2044 CDS CP016553.1 2033350 2032385 -1 - 966 glycosyl transferase family 2 - none -
fig|6666666.229913.peg.2045 CDS CP016553.1 2034661 2033384 -1 - 1278 Membrane protein involved in the export of O-antigen, teichoic acid lipoteichoic acids - none -
fig|6666666.229913.peg.2046 CDS CP016553.1 2035770 2034661 -3 - 1110 regulator of length of O-antigen component of lipopolysaccharide chains KDO2-Lipid A biosynthesis
fig|6666666.229913.peg.2047 CDS CP016553.1 2036668 2035880 -1 - 789 DNA for glycosyltransferase, lytic transglycosylase, dTDP-4-rhamnose reductase Rhamnose containing glycans
fig|6666666.229913.peg.2048 CDS CP016553.1 2037471 2036668 -3 - 804 Exodeoxyribonuclease III (EC 3.1.11.2) DNA repair, bacterial
fig|6666666.229913.peg.2049 CDS CP016553.1 2038508 2037498 -2 - 1011 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) Murein Hydrolases;
Peptidoglycan Biosynthesis
fig|6666666.229913.peg.2050 CDS CP016553.1 2038474 2038644 1 + 171 hypothetical protein - none -
fig|6666666.229913.peg.2051 CDS CP016553.1 2039442 2038633 -3 - 810 Glucosyl-3-phosphoglycerate synthase (EC 2.4.1.266) - none -
fig|6666666.229913.peg.2052 CDS CP016553.1 2040392 2039511 -2 - 882 Glycosyltransferase - none -
fig|6666666.229913.peg.2053 CDS CP016553.1 2041582 2040392 -1 - 1191 DNA for glycosyltransferase, lytic transglycosylase, dTDP-4-rhamnose reductase Rhamnose containing glycans
fig|6666666.229913.peg.2054 CDS CP016553.1 2042367 2041591 -3 - 777 Lipopolysaccharide core biosynthesis glycosyltransferase WadA - none -
fig|6666666.229913.peg.2055 CDS CP016553.1 2042558 2044021 2 + 1464 putative flippase - none -
fig|6666666.229913.peg.2056 CDS CP016553.1 2044018 2044974 1 + 957 Polysaccharide polymerization protein - none -
fig|6666666.229913.peg.2057 CDS CP016553.1 2045083 2045334 1 + 252 YefM protein (antitoxin to YoeB) Toxin-antitoxin replicon stabilization systems
fig|6666666.229913.peg.2058 CDS CP016553.1 2045331 2045585 3 + 255 YoeB toxin protein Toxin-antitoxin replicon stabilization systems
fig|6666666.229913.peg.2059 CDS CP016553.1 2045598 2046341 3 + 744 Probable transmembrane protein - none -
fig|6666666.229913.peg.2060 CDS CP016553.1 2046314 2046475 2 + 162 hypothetical protein - none -
fig|6666666.229913.peg.2061 CDS CP016553.1 2046518 2047345 2 + 828 DNA ligase (ATP) (EC 6.5.1.1) DNA ligases
fig|6666666.229913.peg.2062 CDS CP016553.1 2049651 2047477 -3 - 2175 ATP-dependent DNA helicase UvrD/PcrA DNA repair, bacterial UvrD and related helicases
fig|6666666.229913.peg.2063 CDS CP016553.1 2051173 2049824 -1 - 1350 Low-affinity gluconate/H+ symporter GntU D-gluconate and ketogluconates metabolism
fig|6666666.229913.peg.2064 CDS CP016553.1 2051391 2051909 3 + 519 Gluconokinase (EC 2.7.1.12) D-gluconate and ketogluconates metabolism;
Entner-Doudoroff Pathway
fig|6666666.229913.peg.2065 CDS CP016553.1 2052028 2051906 -1 - 123 hypothetical protein - none -
fig|6666666.229913.peg.2066 CDS CP016553.1 2052977 2051979 -2 - 999 Gluconate utilization system Gnt-I transcriptional repressor D-gluconate and ketogluconates metabolism
fig|6666666.229913.peg.2067 CDS CP016553.1 2053850 2053026 -2 - 825 Formate dehydrogenase chain D (EC 1.2.1.2) Formate hydrogenase
fig|6666666.229913.peg.2068 CDS CP016553.1 2054071 2057181 1 + 3111 Formate dehydrogenase N alpha subunit (EC 1.2.1.2) @ selenocysteine-containing Formate dehydrogenase;
Formate hydrogenase
fig|6666666.229913.peg.2069 CDS CP016553.1 2057279 2058109 2 + 831 Formate dehydrogenase O beta subunit (EC 1.2.1.2) Formate dehydrogenase;
Formate hydrogenase
fig|6666666.229913.peg.2070 CDS CP016553.1 2058102 2058815 3 + 714 Formate dehydrogenase -O, gamma subunit (EC 1.2.1.2) Anaerobic respiratory reductases;
Formate hydrogenase
fig|6666666.229913.peg.2071 CDS CP016553.1 2058965 2059081 2 + 117 hypothetical protein - none -
fig|6666666.229913.peg.2072 CDS CP016553.1 2061721 2059436 -1 - 2286 [NiFe] hydrogenase metallocenter assembly protein HypF G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229913.peg.2073 CDS CP016553.1 2062014 2062613 3 + 600 Hydrogenase-4 component A - none -
fig|6666666.229913.peg.2074 CDS CP016553.1 2062647 2064668 3 + 2022 Hydrogenase-4 component B (EC 1.-.-.-) / Formate hydrogenlyase subunit 3 Formate hydrogenase;
Formate hydrogenase
fig|6666666.229913.peg.2075 CDS CP016553.1 2064676 2065641 1 + 966 Hydrogenase-4 component C (EC 1.-.-.-) Formate hydrogenase
fig|6666666.229913.peg.2076 CDS CP016553.1 2065654 2067099 1 + 1446 Na(+) H(+) antiporter subunit A - none -
fig|6666666.229913.peg.2077 CDS CP016553.1 2067110 2067748 2 + 639 Hydrogenase-4 component E (EC 1.-.-.-) Formate hydrogenase
fig|6666666.229913.peg.2078 CDS CP016553.1 2067753 2069291 3 + 1539 Hydrogenase-4 component F - none -
fig|6666666.229913.peg.2079 CDS CP016553.1 2069311 2071041 1 + 1731 Formate hydrogenlyase subunit 5 Formate hydrogenase
fig|6666666.229913.peg.2080 CDS CP016553.1 2071055 2071702 2 + 648 Formate hydrogenlyase complex 3 iron-sulfur protein; Formate hydrogenlyase subunit 6; Ni,Fe-hydrogenase III medium subunit Formate hydrogenase
fig|6666666.229913.peg.2081 CDS CP016553.1 2071699 2072475 1 + 777 Formate hydrogenlyase subunit 7 Formate hydrogenase
fig|6666666.229913.peg.2082 CDS CP016553.1 2072557 2072961 1 + 405 Formate hydrogenlyase transcriptional activator Formate hydrogenase
fig|6666666.229913.peg.2083 CDS CP016553.1 2072951 2073412 2 + 462 Coenzyme F420 hydrogenase maturation protease (EC 3.4.24.-) Hydrogenases
fig|6666666.229913.peg.2084 CDS CP016553.1 2073540 2074733 3 + 1194 cell filamentation protein Fic-related protein - none -
fig|6666666.229913.peg.2085 CDS CP016553.1 2074866 2077088 3 + 2223 Formate dehydrogenase H (EC 1.2.1.2) @ selenocysteine-containing Formate dehydrogenase
fig|6666666.229913.peg.2088 CDS CP016553.1 2079422 2078130 -2 - 1293 hypothetical protein - none -
fig|6666666.229913.peg.2089 CDS CP016553.1 2080327 2079455 -1 - 873 Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) Serine-glyoxylate cycle;
TCA Cycle
fig|6666666.229913.peg.2090 CDS CP016553.1 2081507 2080338 -2 - 1170 Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) Serine-glyoxylate cycle;
TCA Cycle
fig|6666666.229913.peg.2091 CDS CP016553.1 2081703 2081551 -3 - 153 hypothetical protein - none -
fig|6666666.229913.peg.2092 CDS CP016553.1 2082916 2081693 -1 - 1224 Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61) Dehydrogenase complexes;
TCA Cycle
fig|6666666.229913.peg.2093 CDS CP016553.1 2085849 2083042 -3 - 2808 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) Dehydrogenase complexes;
TCA Cycle
fig|6666666.229913.peg.2094 CDS CP016553.1 2085934 2086056 1 + 123 hypothetical protein - none -
fig|6666666.229913.peg.2095 CDS CP016553.1 2086766 2086128 -2 - 639 Hypothetical metal-binding enzyme, YcbL homolog CBSS-228400.4.peg.1623
fig|6666666.229913.peg.2096 CDS CP016553.1 2087403 2086843 -3 - 561 FIG001587: exported protein CBSS-228400.4.peg.1623
fig|6666666.229913.peg.2097 CDS CP016553.1 2088976 2087468 -1 - 1509 L,D-transpeptidase YcbB CBSS-228400.4.peg.1623
fig|6666666.229913.peg.2098 CDS CP016553.1 2091111 2089054 -3 - 2058 Tail-specific protease precursor (EC 3.4.21.102) - none -
fig|6666666.229913.peg.2099 CDS CP016553.1 2091796 2091185 -1 - 612 ProQ: influences osmotic activation of compatible solute ProP - none -
fig|6666666.229913.peg.2100 CDS CP016553.1 2092014 2093297 3 + 1284 Paraquat-inducible protein A Oxidative stress
fig|6666666.229913.peg.2101 CDS CP016553.1 2093260 2095917 1 + 2658 Paraquat-inducible protein B Oxidative stress
fig|6666666.229913.peg.2102 CDS CP016553.1 2097236 2095992 -2 - 1245 Tripeptide aminopeptidase (EC 3.4.11.4) - none -
fig|6666666.229913.peg.2103 CDS CP016553.1 2097500 2098618 2 + 1119 Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) Polyamine Metabolism
fig|6666666.229913.peg.2104 CDS CP016553.1 2098602 2099462 3 + 861 Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) Polyamine Metabolism
fig|6666666.229913.peg.2105 CDS CP016553.1 2099462 2100235 2 + 774 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) Polyamine Metabolism
fig|6666666.229913.peg.2106 CDS CP016553.1 2100366 2101463 3 + 1098 ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1) Polyamine Metabolism
fig|6666666.229913.peg.2107 CDS CP016553.1 2101587 2102483 3 + 897 Cytidine deaminase (EC 3.5.4.5) Murein hydrolase regulation and cell death;
pyrimidine conversions;
tRNA modification Bacteria
fig|6666666.229913.peg.2108 CDS CP016553.1 2103879 2102563 -3 - 1317 Seryl-tRNA synthetase (EC 6.1.1.11) CBSS-326442.4.peg.1852;
Glycine and Serine Utilization;
tRNA aminoacylation, Ser
fig|6666666.229913.peg.2109 CDS CP016553.1 2104186 2105853 1 + 1668 C4-dicarboxylate transporter DcuB - none -
fig|6666666.229913.peg.2110 CDS CP016553.1 2107690 2106350 -1 - 1341 FIG065221: Holliday junction DNA helicase CBSS-83333.1.peg.876
fig|6666666.229913.peg.2111 CDS CP016553.1 2108320 2107703 -1 - 618 Outer membrane lipoprotein carrier protein LolA CBSS-83333.1.peg.876;
Lipopolysaccharide assembly;
Lipoprotein sorting system
fig|6666666.229913.peg.2112 CDS CP016553.1 2111157 2108413 -3 - 2745 Cell division protein FtsK Bacterial Cell Division;
Bacterial Cytoskeleton;
Bacterial RNA-metabolizing Zn-dependent hydrolases;
CBSS-83333.1.peg.876
fig|6666666.229913.peg.2113 CDS CP016553.1 2111640 2111161 -3 - 480 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229913.peg.2114 CDS CP016553.1 2111754 2111927 3 + 174 DNA repair protein RadA DNA repair, bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229913.peg.2115 CDS CP016553.1 2113360 2112356 -1 - 1005 Biotin synthase (EC 2.8.1.6) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229913.peg.2116 CDS CP016553.1 2114053 2113406 -1 - 648 Thiamin ABC transporter, ATPase component / Thiamine transport ATP-binding protein thiQ Thiamin biosynthesis
fig|6666666.229913.peg.2117 CDS CP016553.1 2115665 2114037 -2 - 1629 Thiamin ABC transporter, transmembrane component Thiamin biosynthesis
fig|6666666.229913.peg.2118 CDS CP016553.1 2116678 2115674 -1 - 1005 Thiamin ABC transporter, substrate-binding component Thiamin biosynthesis
fig|6666666.229913.peg.2119 CDS CP016553.1 2117080 2116700 -1 - 381 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) - none -
fig|6666666.229913.peg.2120 CDS CP016553.1 2118128 2117973 -2 - 156 CRISPR-associated protein Cas2 CRISPRs
fig|6666666.229913.peg.2121 CDS CP016553.1 2119156 2118452 -1 - 705 hypothetical protein - none -
fig|6666666.229913.peg.2122 CDS CP016553.1 2119872 2119222 -3 - 651 CRISPR-associated RecB family exonuclease Cas4 / CRISPR-associated protein Cas1 CRISPRs
fig|6666666.229913.peg.2123 CDS CP016553.1 2120883 2120017 -3 - 867 CRISPR-associated protein, Csd2 family CRISPRs
fig|6666666.229913.peg.2124 CDS CP016553.1 2121279 2120896 -3 - 384 CRISPR-associated protein, Csd1 family CRISPRs
fig|6666666.229913.peg.2125 CDS CP016553.1 2122673 2121276 -2 - 1398 CRISPR-associated protein, Csd1 family CRISPRs
fig|6666666.229913.peg.2126 CDS CP016553.1 2123344 2122670 -1 - 675 CRISPR-associated protein, Cas5d family CRISPRs
fig|6666666.229913.peg.2127 CDS CP016553.1 2126176 2123459 -1 - 2718 Type III restriction-modification enzyme helicase subunit - none -
fig|6666666.229913.peg.2128 CDS CP016553.1 2127207 2126173 -3 - 1035 Putative DNA-binding protein in cluster with Type I restriction-modification system Restriction-Modification System
fig|6666666.229913.peg.2129 CDS CP016553.1 2127334 2127191 -1 - 144 hypothetical protein - none -
fig|6666666.229913.peg.2130 CDS CP016553.1 2129070 2127334 -3 - 1737 Type III restriction-modification system methylation subunit (EC 2.1.1.72) Restriction-Modification System
fig|6666666.229913.peg.2131 CDS CP016553.1 2130025 2129084 -1 - 942 FIG00807791: hypothetical protein - none -
fig|6666666.229913.peg.2132 CDS CP016553.1 2133509 2130633 -2 - 2877 helicase (Snf2/Rad54 family) - none -
fig|6666666.229913.peg.2133 CDS CP016553.1 2135433 2133646 -3 - 1788 CRISPR-associated helicase Cas3 CRISPRs
fig|6666666.229913.peg.2134 CDS CP016553.1 2135898 2135464 -3 - 435 CRISPR-associated helicase Cas3 CRISPRs
fig|6666666.229913.peg.2135 CDS CP016553.1 2136214 2136876 1 + 663 Putative TEGT family carrier/transport protein CBSS-326442.4.peg.1852
fig|6666666.229913.peg.2136 CDS CP016553.1 2136962 2137291 2 + 330 tRNA 2-thiouridine synthesizing protein E (EC 2.8.1.-) CBSS-326442.4.peg.1852;
Lipoic acid synthesis cluster;
Sulfite reduction-associated complex DsrMKJOP and co-clustering genes
fig|6666666.229913.peg.2137 CDS CP016553.1 2137389 2138270 3 + 882 Manganese ABC transporter, periplasmic-binding protein SitA - none -
fig|6666666.229913.peg.2138 CDS CP016553.1 2138270 2139160 2 + 891 Manganese ABC transporter, ATP-binding protein SitB - none -
fig|6666666.229913.peg.2139 CDS CP016553.1 2139160 2140017 1 + 858 Manganese ABC transporter, inner membrane permease protein SitC - none -
fig|6666666.229913.peg.2140 CDS CP016553.1 2140014 2140862 3 + 849 Manganese ABC transporter, inner membrane permease protein SitD - none -
fig|6666666.229913.peg.2141 CDS CP016553.1 2141109 2140837 -3 - 273 Acylphosphate phosphohydrolase (EC 3.6.1.7), putative Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229913.peg.2142 CDS CP016553.1 2141254 2141934 1 + 681 UPF0319 protein YccT precursor CBSS-83333.1.peg.946
fig|6666666.229913.peg.2143 CDS CP016553.1 2141997 2142455 3 + 459 Methylglyoxal synthase (EC 4.2.3.3) CBSS-83333.1.peg.946;
Methylglyoxal Metabolism
fig|6666666.229913.peg.2144 CDS CP016553.1 2142455 2142928 2 + 474 Inner membrane protein YccF CBSS-83333.1.peg.946
fig|6666666.229913.peg.2145 CDS CP016553.1 2142937 2145078 1 + 2142 Putative efflux (PET) family inner membrane protein YccS CBSS-83333.1.peg.946
fig|6666666.229913.peg.2146 CDS CP016553.1 2145581 2145075 -2 - 507 FIG001674: hypothetical protein - none -
fig|6666666.229913.peg.2147 CDS CP016553.1 2145644 2146594 2 + 951 Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p YrdC-YciO-Sua5 protein family
fig|6666666.229913.peg.2148 CDS CP016553.1 2147705 2146761 -2 - 945 Transketolase, C-terminal section (EC 2.2.1.1) Pentose phosphate pathway
fig|6666666.229913.peg.2149 CDS CP016553.1 2148519 2147695 -3 - 825 Transketolase, N-terminal section (EC 2.2.1.1) Pentose phosphate pathway
fig|6666666.229913.peg.2150 CDS CP016553.1 2149884 2148529 -3 - 1356 FIG00732228: membrane protein - none -
fig|6666666.229913.peg.2151 CDS CP016553.1 2150170 2149901 -1 - 270 Putative sugar phosphotransferase component II B - none -
fig|6666666.229913.peg.2152 CDS CP016553.1 2151313 2150738 -1 - 576 hypothetical protein - none -
fig|6666666.229913.peg.2153 CDS CP016553.1 2152596 2151946 -3 - 651 hypothetical protein - none -
fig|6666666.229913.peg.2154 CDS CP016553.1 2153754 2152633 -3 - 1122 hypothetical protein - none -
fig|6666666.229913.peg.2155 CDS CP016553.1 2155689 2153770 -3 - 1920 VgrG-3 protein - none -
fig|6666666.229913.peg.2156 CDS CP016553.1 2155856 2155686 -2 - 171 hypothetical protein - none -
fig|6666666.229913.peg.2157 CDS CP016553.1 2158380 2156023 -3 - 2358 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) DNA uptake cluster;
Peptidoglycan Biosynthesis;
Type IV pilus
fig|6666666.229913.peg.2158 CDS CP016553.1 2159243 2158500 -2 - 744 Putative membrane protein YeiH - none -
fig|6666666.229913.peg.2159 CDS CP016553.1 2165454 2159683 -3 - 5772 FIG00904191: hypothetical protein - none -
fig|6666666.229913.peg.2160 CDS CP016553.1 2166968 2165520 -2 - 1449 TldD protein, part of TldE/TldD proteolytic complex CBSS-354.1.peg.2917;
Putative TldE-TldD proteolytic complex
fig|6666666.229913.peg.2161 CDS CP016553.1 2168125 2167265 -1 - 861 Molybdenum transport system protein ModD Molybdenum cofactor biosynthesis
fig|6666666.229913.peg.2162 CDS CP016553.1 2168736 2168122 -3 - 615 ABC transporter ATP-binding protein - none -
fig|6666666.229913.peg.2163 CDS CP016553.1 2169542 2168739 -2 - 804 Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229913.peg.2164 CDS CP016553.1 2170245 2169511 -3 - 735 Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229913.peg.2165 CDS CP016553.1 2170553 2170909 2 + 357 Mobile element protein - none -
fig|6666666.229913.peg.2166 CDS CP016553.1 2170951 2171199 1 + 249 Mobile element protein - none -
fig|6666666.229913.peg.2167 CDS CP016553.1 2172719 2171286 -2 - 1434 Putative GTP-binding protein YdgA - none -
fig|6666666.229913.peg.2168 CDS CP016553.1 2173008 2174909 3 + 1902 Chaperone protein DnaK GroEL GroES;
Heat shock dnaK gene cluster extended;
Protein chaperones
fig|6666666.229913.peg.2169 CDS CP016553.1 2175344 2176471 2 + 1128 Chaperone protein DnaJ GroEL GroES;
Heat shock dnaK gene cluster extended;
Protein chaperones
fig|6666666.229913.peg.2170 CDS CP016553.1 2176896 2176549 -3 - 348 Programmed cell death toxin ChpB - none -
fig|6666666.229913.peg.2171 CDS CP016553.1 2177153 2176896 -2 - 258 hypothetical protein - none -
fig|6666666.229913.peg.2172 CDS CP016553.1 2178350 2177298 -2 - 1053 Outer membrane protein P2 precursor (OMP P2) - none -
fig|6666666.229913.peg.2173 CDS CP016553.1 2179754 2178564 -2 - 1191 Cystathionine beta-lyase (EC 4.4.1.8) Methionine Biosynthesis
fig|6666666.229913.peg.2174 CDS CP016553.1 2180009 2180566 2 + 558 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229913.peg.2175 CDS CP016553.1 2182537 2181839 -1 - 699 NAD-dependent protein deacetylase of SIR2 family Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229913.peg.2176 CDS CP016553.1 2183200 2182553 -1 - 648 Glutaredoxin 2 Glutaredoxins;
Glutathione: Redox cycle
fig|6666666.229913.peg.2177 CDS CP016553.1 2184792 2183317 -3 - 1476 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) Bacterial Cell Division;
CBSS-354.1.peg.2917;
RNA processing and degradation, bacterial
fig|6666666.229913.peg.2178 CDS CP016553.1 2184932 2186452 2 + 1521 Proline/sodium symporter PutP (TC 2.A.21.2.1) @ Propionate/sodium symporter - none -
fig|6666666.229913.peg.2179 CDS CP016553.1 2186466 2187431 3 + 966 tRNA (5-methoxyuridine) 34 synthase tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229913.peg.2180 CDS CP016553.1 2187519 2188817 3 + 1299 Adenylosuccinate synthetase (EC 6.3.4.4) Purine conversions
fig|6666666.229913.peg.2181 CDS CP016553.1 2189172 2188882 -3 - 291 hypothetical protein - none -
fig|6666666.229913.peg.2182 CDS CP016553.1 2190178 2189195 -1 - 984 DnaJ-class molecular chaperone CbpA Protein chaperones
fig|6666666.229913.peg.2183 CDS CP016553.1 2190466 2191998 1 + 1533 GTP-binding protein EngA CBSS-290633.1.peg.1906;
CBSS-498211.3.peg.1415;
Universal GTPases
fig|6666666.229913.peg.2184 CDS CP016553.1 2193264 2192068 -3 - 1197 Sugar efflux transporter SotB - none -
fig|6666666.229913.peg.2185 CDS CP016553.1 2194468 2193266 -1 - 1203 FIG00696476: hypothetical protein - none -
fig|6666666.229913.peg.2186 CDS CP016553.1 2195053 2194469 -1 - 585 Deoxycytidine triphosphate deaminase (EC 3.5.4.13) pyrimidine conversions
fig|6666666.229913.peg.2187 CDS CP016553.1 2195713 2195063 -1 - 651 Uridine kinase (EC 2.7.1.48) [C1] pyrimidine conversions
fig|6666666.229913.peg.2188 CDS CP016553.1 2196022 2197062 1 + 1041 Ferric iron ABC transporter, iron-binding protein Iron acquisition in Streptococcus
fig|6666666.229913.peg.2189 CDS CP016553.1 2197515 2198267 3 + 753 Ferric iron ABC transporter, iron-binding protein Iron acquisition in Streptococcus
fig|6666666.229913.peg.2190 CDS CP016553.1 2198295 2200352 3 + 2058 Ferric iron ABC transporter, permease protein Iron acquisition in Streptococcus
fig|6666666.229913.peg.2191 CDS CP016553.1 2200368 2201414 3 + 1047 Fe(3+) ions import ATP-binding protein fbpC (EC 3.6.3.30) - none -
fig|6666666.229913.peg.2192 CDS CP016553.1 2201693 2203813 2 + 2121 unknown - none -
fig|6666666.229913.peg.2193 CDS CP016553.1 2205623 2205051 -2 - 573 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) Proline Synthesis
fig|6666666.229913.peg.2194 CDS CP016553.1 2206412 2205753 -2 - 660 putative membrane protein - none -
fig|6666666.229913.peg.2195 CDS CP016553.1 2206609 2206493 -1 - 117 hypothetical protein - none -
fig|6666666.229913.peg.2196 CDS CP016553.1 2206624 2207430 1 + 807 Permeases of the drug/metabolite transporter (DMT) superfamily - none -
fig|6666666.229913.peg.2197 CDS CP016553.1 2208700 2207693 -1 - 1008 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) Cluster Ytf and putative sugar transporter;
Glycolysis and Gluconeogenesis;
Putative sugar ABC transporter (ytf cluster)
fig|6666666.229913.peg.2198 CDS CP016553.1 2208858 2210231 3 + 1374 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (EC 6.3.2.-) Peptidoglycan biosynthesis--gjo;
Recycling of Peptidoglycan Amino Acids
fig|6666666.229913.peg.2199 CDS CP016553.1 2210539 2210414 -1 - 126 hypothetical protein - none -
fig|6666666.229913.peg.2200 CDS CP016553.1 2210609 2211727 2 + 1119 Membrane-bound lytic murein transglycosylase A precursor (EC 3.2.1.-) Murein Hydrolases
fig|6666666.229913.peg.2201 CDS CP016553.1 2211727 2212497 1 + 771 CsdL (EC-YgdL) protein of the HesA/MoeB/ThiF family, part of the CsdA-E-L sulfur transfer pathway - none -
fig|6666666.229913.peg.2202 CDS CP016553.1 2212597 2213616 1 + 1020 Zinc ABC transporter, periplasmic-binding protein ZnuA - none -
fig|6666666.229913.peg.2203 CDS CP016553.1 2213744 2214556 2 + 813 Outer membrane lipoprotein e (P4) / NMN 5@1-nucleotidase, extracellular (EC 3.1.3.5) NAD and NADP cofactor biosynthesis global
fig|6666666.229913.peg.2204 CDS CP016553.1 2215511 2215095 -2 - 417 conserved hypothetical protein; possible membrane protein - none -
fig|6666666.229913.peg.2205 CDS CP016553.1 2215632 2216012 3 + 381 Putative oligoketide cyclase/lipid transport protein, similarity with yeast ubiquinone-binding protein YOL008W - none -
fig|6666666.229913.peg.2206 CDS CP016553.1 2216005 2216298 1 + 294 UPF0125 protein yfjF - none -
fig|6666666.229913.peg.2207 CDS CP016553.1 2216331 2217524 3 + 1194 FIG074102: hypothetical protein - none -
fig|6666666.229913.peg.2208 CDS CP016553.1 2217531 2218865 3 + 1335 Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) DNA repair, bacterial;
Purine salvage cluster
fig|6666666.229913.peg.2209 CDS CP016553.1 2219725 2218871 -1 - 855 FIG000506: Predicted P-loop-containing kinase - none -
fig|6666666.229913.peg.2210 CDS CP016553.1 2220286 2219753 -1 - 534 PTS IIA-like nitrogen-regulatory protein PtsN - none -
fig|6666666.229913.peg.2211 CDS CP016553.1 2221015 2220290 -1 - 726 Lipopolysaccharide ABC transporter, ATP-binding protein LptB KDO2-Lipid A biosynthesis;
Lipopolysaccharide assembly
fig|6666666.229913.peg.2212 CDS CP016553.1 2221539 2221021 -3 - 519 LptA, protein essential for LPS transport across the periplasm KDO2-Lipid A biosynthesis;
Lipopolysaccharide assembly
fig|6666666.229913.peg.2213 CDS CP016553.1 2222095 2221520 -1 - 576 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters Lipopolysaccharide assembly
fig|6666666.229913.peg.2214 CDS CP016553.1 2222208 2222092 -3 - 117 hypothetical protein - none -
fig|6666666.229913.peg.2215 CDS CP016553.1 2222378 2223175 2 + 798 Uncharacterized ABC transporter, ATP-binding protein YrbF CBSS-12149.1.peg.3301;
Lipopolysaccharide assembly
fig|6666666.229913.peg.2216 CDS CP016553.1 2223169 2223954 1 + 786 Uncharacterized ABC transporter, permease component YrbE CBSS-12149.1.peg.3301;
Lipopolysaccharide assembly
fig|6666666.229913.peg.2217 CDS CP016553.1 2223977 2224486 2 + 510 Uncharacterized ABC transporter, periplasmic component YrbD CBSS-12149.1.peg.3301;
Lipopolysaccharide assembly
fig|6666666.229913.peg.2218 CDS CP016553.1 2224515 2225156 3 + 642 Uncharacterized ABC transporter, auxiliary component YrbC CBSS-12149.1.peg.3301;
Lipopolysaccharide assembly
fig|6666666.229913.peg.2219 CDS CP016553.1 2225250 2225519 3 + 270 Uncharacterized protein YrbB CBSS-12149.1.peg.3301
fig|6666666.229913.peg.2220 CDS CP016553.1 2225519 2225776 2 + 258 YrbA protein Broadly distributed proteins not in subsystems;
CBSS-12149.1.peg.3301
fig|6666666.229913.peg.2221 CDS CP016553.1 2225793 2227070 3 + 1278 UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7) CBSS-12149.1.peg.3301;
Peptidoglycan Biosynthesis;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229913.peg.2222 CDS CP016553.1 2227422 2227132 -3 - 291 FIG00696346: hypothetical protein - none -
fig|6666666.229913.peg.2223 CDS CP016553.1 2227626 2229056 3 + 1431 Long-chain fatty acid transport protein - none -
fig|6666666.229913.peg.2224 CDS CP016553.1 2229133 2229672 1 + 540 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) DNA repair, bacterial
fig|6666666.229913.peg.2225 CDS CP016553.1 2229669 2230337 3 + 669 DNA mismatch repair endonuclease MutH DNA repair, bacterial
fig|6666666.229913.peg.2226 CDS CP016553.1 2230402 2231127 1 + 726 Integral membrane protein TerC - none -
fig|6666666.229913.peg.2227 CDS CP016553.1 2232645 2231236 -3 - 1410 Glutamine synthetase type I (EC 6.3.1.2) Ammonia assimilation;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Glutamine synthetases;
Peptidoglycan Biosynthesis
fig|6666666.229913.peg.2228 CDS CP016553.1 2233032 2234885 3 + 1854 GTP-binding protein TypA/BipA Universal GTPases
fig|6666666.229913.peg.2229 CDS CP016553.1 2234995 2234882 -1 - 114 hypothetical protein - none -
fig|6666666.229913.peg.2230 CDS CP016553.1 2235111 2237891 3 + 2781 TolA protein Ton and Tol transport systems
fig|6666666.229913.peg.2231 CDS CP016553.1 2238419 2237955 -2 - 465 Thiol peroxidase, Bcp-type (EC 1.11.1.15) CBSS-316057.3.peg.3521;
Thioredoxin-disulfide reductase
fig|6666666.229913.peg.2232 CDS CP016553.1 2238577 2239470 1 + 894 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229913.peg.2233 CDS CP016553.1 2239583 2240587 2 + 1005 Outer membrane protein NlpB, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and YfgL); Lipoprotein-34 precursor Lipopolysaccharide assembly
fig|6666666.229913.peg.2234 CDS CP016553.1 2240722 2242233 1 + 1512 L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1) / Osmotic adaptation Choline and Betaine Uptake and Betaine Biosynthesis
fig|6666666.229913.peg.2235 CDS CP016553.1 2242548 2243384 3 + 837 L-proline glycine betaine ABC transport system permease protein ProV (TC 3.A.1.12.1) Choline and Betaine Uptake and Betaine Biosynthesis
fig|6666666.229913.peg.2236 CDS CP016553.1 2244132 2243437 -3 - 696 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC A Hypothetical Protein Related to Proline Metabolism;
CBSS-630.2.peg.3360
fig|6666666.229913.peg.2237 CDS CP016553.1 2245561 2244125 -1 - 1437 Nicotinamide phosphoribosyltransferase (EC 2.4.2.12) NAD and NADP cofactor biosynthesis global
fig|6666666.229913.peg.2238 CDS CP016553.1 2245652 2245783 2 + 132 hypothetical protein - none -
fig|6666666.229913.peg.2239 CDS CP016553.1 2245872 2248319 3 + 2448 Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) CBSS-216591.1.peg.168;
Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch;
Methionine Biosynthesis;
Threonine and Homoserine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229913.peg.2240 CDS CP016553.1 2248332 2249276 3 + 945 Homoserine kinase (EC 2.7.1.39) CBSS-269482.1.peg.1294;
Methionine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229913.peg.2241 CDS CP016553.1 2249304 2249744 3 + 441 hypothetical protein - none -
fig|6666666.229913.peg.2242 CDS CP016553.1 2249800 2251074 1 + 1275 Threonine synthase (EC 4.2.3.1) Threonine and Homoserine Biosynthesis
fig|6666666.229913.peg.2243 CDS CP016553.1 2251133 2251852 2 + 720 4@1-phosphopantetheinyl transferase (EC 2.7.8.-) Fatty Acid Biosynthesis FASII
fig|6666666.229913.peg.2244 CDS CP016553.1 2251948 2253201 1 + 1254 HflK protein Hfl operon;
Scaffold proteins for [4Fe-4S] cluster assembly (MRP family)
fig|6666666.229913.peg.2245 CDS CP016553.1 2253201 2254088 3 + 888 HflC protein Hfl operon;
Scaffold proteins for [4Fe-4S] cluster assembly (MRP family)
fig|6666666.229913.peg.2246 CDS CP016553.1 2254118 2254243 2 + 126 hypothetical protein - none -
fig|6666666.229913.peg.2247 CDS CP016553.1 2255564 2254266 -2 - 1299 Cell division trigger factor (EC 5.2.1.8) Bacterial Cell Division
fig|6666666.229913.peg.2248 CDS CP016553.1 2256621 2255728 -3 - 894 Tyrosine recombinase XerD - none -
fig|6666666.229913.peg.2249 CDS CP016553.1 2257064 2256624 -2 - 441 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) A Hypothetical Protein Related to Proline Metabolism;
CBSS-630.2.peg.3360;
Proline Synthesis
fig|6666666.229913.peg.2250 CDS CP016553.1 2257127 2258044 2 + 918 DNA recombination-dependent growth factor C DNA repair, bacterial
fig|6666666.229913.peg.2251 CDS CP016553.1 2258509 2258135 -1 - 375 opacity associated protein - none -
fig|6666666.229913.peg.2252 CDS CP016553.1 2259893 2258571 -2 - 1323 Cell envelope opacity-associated protein A - none -
fig|6666666.229913.peg.2253 CDS CP016553.1 2261096 2260065 -2 - 1032 Lysyl-lysine 2,3-aminomutase Translation elongation factor P lysylation
fig|6666666.229913.peg.2254 CDS CP016553.1 2261161 2261682 1 + 522 Translation elongation factor P Translation elongation factor P lysylation;
Translation elongation factors bacterial
fig|6666666.229913.peg.2255 CDS CP016553.1 2262013 2263389 1 + 1377 Tryptophanase (EC 4.1.99.1) - none -
fig|6666666.229913.peg.2256 CDS CP016553.1 2263551 2264765 3 + 1215 Tyrosine-specific transport protein - none -
fig|6666666.229913.peg.2257 CDS CP016553.1 2265508 2264831 -1 - 678 YheO-like PAS domain - none -
fig|6666666.229913.peg.2258 CDS CP016553.1 2266077 2265571 -3 - 507 Arabinose efflux permease - none -
fig|6666666.229913.peg.2259 CDS CP016553.1 2266801 2266070 -1 - 732 UDP-2,3-diacylglucosamine diphosphatase (EC 3.6.1.54) KDO2-Lipid A biosynthesis;
Llipid A biosynthesis cluster
fig|6666666.229913.peg.2260 CDS CP016553.1 2266912 2267655 1 + 744 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229913.peg.2261 CDS CP016553.1 2267663 2269075 2 + 1413 Putative cell division protein precursor - none -
fig|6666666.229913.peg.2262 CDS CP016553.1 2270011 2269148 -1 - 864 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229913.peg.2263 CDS CP016553.1 2270800 2270153 -1 - 648 Pyruvate formate-lyase activating enzyme (EC 1.97.1.4) Fermentations: Mixed acid
fig|6666666.229913.peg.2264 CDS CP016553.1 2273351 2271039 -2 - 2313 Pyruvate formate-lyase (EC 2.3.1.54) Butanol Biosynthesis;
Fermentations: Mixed acid
fig|6666666.229913.peg.2265 CDS CP016553.1 2274271 2273450 -1 - 822 Formate efflux transporter (TC 2.A.44 family) Fermentations: Mixed acid
fig|6666666.229913.peg.2266 CDS CP016553.1 2274614 2274964 2 + 351 Bis(5@1-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17) pyrimidine conversions
fig|6666666.229913.peg.2267 CDS CP016553.1 2274965 2275318 2 + 354 Predicted periplasmic lipoprotein - none -
fig|6666666.229913.peg.2268 CDS CP016553.1 2275320 2276366 3 + 1047 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) Murein Hydrolases;
Recycling of Peptidoglycan Amino Sugars
fig|6666666.229913.peg.2269 CDS CP016553.1 2276368 2277300 1 + 933 23S rRNA (Uracil-5-) -methyltransferase rumB (EC 2.1.1.-) RNA methylation
fig|6666666.229913.peg.2270 CDS CP016553.1 2277384 2277545 3 + 162 23S rRNA (Uracil-5-) -methyltransferase rumB (EC 2.1.1.-) RNA methylation
fig|6666666.229913.peg.2271 CDS CP016553.1 2278610 2277645 -2 - 966 6-phosphofructokinase (EC 2.7.1.11) Glycolysis and Gluconeogenesis
fig|6666666.229913.peg.2272 CDS CP016553.1 2279592 2278672 -3 - 921 Cobalt-zinc-cadmium resistance protein Cobalt-zinc-cadmium resistance
fig|6666666.229913.peg.2273 CDS CP016553.1 2280158 2279592 -2 - 567 FIG00696199: hypothetical protein - none -
fig|6666666.229913.peg.2274 CDS CP016553.1 2280939 2280160 -3 - 780 UPF0246 protein YaaA - none -
fig|6666666.229913.peg.2275 CDS CP016553.1 2281629 2280961 -3 - 669 Uracil-DNA glycosylase, family 1 DNA Repair Base Excision;
Uracil-DNA glycosylase
fig|6666666.229913.peg.2276 CDS CP016553.1 2281915 2282298 1 + 384 Pyruvate formate-lyase (EC 2.3.1.54) Butanol Biosynthesis;
Fermentations: Mixed acid
fig|6666666.229913.peg.2277 CDS CP016553.1 2282462 2284258 2 + 1797 Translation elongation factor LepA Heat shock dnaK gene cluster extended;
Translation elongation factors bacterial;
Universal GTPases
fig|6666666.229913.peg.2278 CDS CP016553.1 2284269 2285291 3 + 1023 Signal peptidase I (EC 3.4.21.89) CBSS-176299.4.peg.1292;
Signal peptidase
fig|6666666.229913.peg.2279 CDS CP016553.1 2285298 2285978 3 + 681 Ribonuclease III (EC 3.1.26.3) CBSS-176299.4.peg.1292;
RNA processing and degradation, bacterial
fig|6666666.229913.peg.2280 CDS CP016553.1 2285975 2286883 2 + 909 GTP-binding protein Era Bacterial Cell Division;
CBSS-176299.4.peg.1292;
Glycyl-tRNA synthetase containing cluster;
Universal GTPases;
tRNA modification Archaea
fig|6666666.229913.peg.2281 CDS CP016553.1 2288342 2286987 -2 - 1356 GTPase and tRNA-U34 5-formylation enzyme TrmE Cell Division Subsystem including YidCD;
RNA modification and chromosome partitioning cluster;
RNA modification cluster;
Universal GTPases;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229913.peg.2282 CDS CP016553.1 2290081 2288471 -1 - 1611 Inner membrane protein translocase component YidC, long form CTP synthase (EC 6.3.4.2) cluster;
Cell Division Subsystem including YidCD;
RNA modification cluster
fig|6666666.229913.peg.2283 CDS CP016553.1 2290365 2290102 -3 - 264 Protein YidD Cell Division Subsystem including YidCD;
RNA modification cluster
fig|6666666.229913.peg.2284 CDS CP016553.1 2290655 2290320 -2 - 336 Ribonuclease P protein component (EC 3.1.26.5) Cell Division Subsystem including YidCD;
RNA modification cluster;
tRNA processing
fig|6666666.229913.peg.2285 CDS CP016553.1 2290835 2290701 -2 - 135 LSU ribosomal protein L34p Cell Division Subsystem including YidCD;
RNA modification cluster
fig|6666666.229913.peg.2286 CDS CP016553.1 2291167 2291030 -1 - 138 hypothetical protein - none -
fig|6666666.229913.rna.1 RNA CP016553.1 76899 76813 -3 - 87 tRNA-Ser-GGA tRNAs
fig|6666666.229913.rna.2 RNA CP016553.1 123808 123881 1 + 74 tRNA-Met-CAT - none -
fig|6666666.229913.rna.3 RNA CP016553.1 157807 157689 -1 - 119 5S RNA - none -
fig|6666666.229913.rna.4 RNA CP016553.1 161098 158056 -1 - 3043 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA - none -
fig|6666666.229913.rna.5 RNA CP016553.1 161380 161308 -1 - 73 tRNA-Glu-TTC - none -
fig|6666666.229913.rna.6 RNA CP016553.1 163015 161476 -1 - 1540 Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA - none -
fig|6666666.229913.rna.7 RNA CP016553.1 293022 293104 3 + 83 tRNA-Leu-GAG tRNAs
fig|6666666.229913.rna.8 RNA CP016553.1 321321 321404 3 + 84 tRNA-Leu-CAG tRNAs
fig|6666666.229913.rna.9 RNA CP016553.1 352014 351896 -3 - 119 5S RNA - none -
fig|6666666.229913.rna.10 RNA CP016553.1 355305 352263 -3 - 3043 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA - none -
fig|6666666.229913.rna.11 RNA CP016553.1 355587 355515 -3 - 73 tRNA-Glu-TTC - none -
fig|6666666.229913.rna.12 RNA CP016553.1 357222 355683 -3 - 1540 Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA - none -
fig|6666666.229913.rna.13 RNA CP016553.1 383811 383738 -3 - 74 tRNA-Arg-ACG tRNAs
fig|6666666.229913.rna.14 RNA CP016553.1 383942 383869 -2 - 74 tRNA-Arg-ACG tRNAs
fig|6666666.229913.rna.15 RNA CP016553.1 384053 383963 -2 - 91 tRNA-Ser-GCT - none -
fig|6666666.229913.rna.16 RNA CP016553.1 448097 448024 -2 - 74 tRNA-Arg-TCT - none -
fig|6666666.229913.rna.17 RNA CP016553.1 448207 448134 -1 - 74 tRNA-Pro-TGG - none -
fig|6666666.229913.rna.18 RNA CP016553.1 470714 470804 2 + 91 tRNA-SeC(p)-TCA - none -
fig|6666666.229913.rna.19 RNA CP016553.1 644257 644184 -1 - 74 tRNA-Met-CAT - none -
fig|6666666.229913.rna.20 RNA CP016553.1 646283 646211 -2 - 73 tRNA-Trp-CCA tRNAs
fig|6666666.229913.rna.21 RNA CP016553.1 646394 646321 -2 - 74 tRNA-Asp-GTC - none -
fig|6666666.229913.rna.22 RNA CP016553.1 646519 646401 -1 - 119 5S RNA - none -
fig|6666666.229913.rna.23 RNA CP016553.1 646685 646567 -2 - 119 5S RNA - none -
fig|6666666.229913.rna.24 RNA CP016553.1 649976 646934 -2 - 3043 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA - none -
fig|6666666.229913.rna.25 RNA CP016553.1 650331 650259 -3 - 73 tRNA-Ala-TGC - none -
fig|6666666.229913.rna.26 RNA CP016553.1 650457 650384 -3 - 74 tRNA-Ile-GAT - none -
fig|6666666.229913.rna.27 RNA CP016553.1 652080 650541 -3 - 1540 Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA - none -
fig|6666666.229913.rna.28 RNA CP016553.1 736911 738450 3 + 1540 Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA - none -
fig|6666666.229913.rna.29 RNA CP016553.1 738546 738618 3 + 73 tRNA-Glu-TTC - none -
fig|6666666.229913.rna.30 RNA CP016553.1 738828 741870 3 + 3043 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA - none -
fig|6666666.229913.rna.31 RNA CP016553.1 742119 742237 3 + 119 5S RNA - none -
fig|6666666.229913.rna.32 RNA CP016553.1 874892 874820 -2 - 73 tRNA-Thr-GGT - none -
fig|6666666.229913.rna.33 RNA CP016553.1 874970 874899 -2 - 72 tRNA-Gly-TCC - none -
fig|6666666.229913.rna.34 RNA CP016553.1 875095 875014 -1 - 82 tRNA-Tyr-GTA - none -
fig|6666666.229913.rna.35 RNA CP016553.1 875201 875129 -2 - 73 tRNA-Thr-TGT - none -
fig|6666666.229913.rna.36 RNA CP016553.1 1033979 1033907 -2 - 73 tRNA-Asn-GTT - none -
fig|6666666.229913.rna.37 RNA CP016553.1 1034059 1033987 -1 - 73 tRNA-Phe-GAA tRNAs
fig|6666666.229913.rna.38 RNA CP016553.1 1234835 1234905 2 + 71 tRNA-Pseudo-AAC - none -
fig|6666666.229913.rna.39 RNA CP016553.1 1299058 1299131 1 + 74 tRNA-Val-GAC tRNAs
fig|6666666.229913.rna.40 RNA CP016553.1 1322675 1322593 -2 - 83 tRNA-Leu-CAA tRNAs
fig|6666666.229913.rna.41 RNA CP016553.1 1557095 1557167 2 + 73 tRNA-Gly-GCC tRNAs
fig|6666666.229913.rna.42 RNA CP016553.1 1594430 1594312 -2 - 119 5S RNA - none -
fig|6666666.229913.rna.43 RNA CP016553.1 1597721 1594679 -2 - 3043 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA - none -
fig|6666666.229913.rna.44 RNA CP016553.1 1598076 1598004 -3 - 73 tRNA-Ala-TGC - none -
fig|6666666.229913.rna.45 RNA CP016553.1 1598202 1598129 -3 - 74 tRNA-Ile-GAT - none -
fig|6666666.229913.rna.46 RNA CP016553.1 1599825 1598286 -3 - 1540 Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA - none -
fig|6666666.229913.rna.47 RNA CP016553.1 1600086 1600013 -3 - 74 tRNA-Pro-TGG - none -
fig|6666666.229913.rna.48 RNA CP016553.1 1600164 1600092 -3 - 73 tRNA-His-GTG - none -
fig|6666666.229913.rna.49 RNA CP016553.1 1600272 1600199 -3 - 74 tRNA-Arg-CCG tRNAs
fig|6666666.229913.rna.50 RNA CP016553.1 1654932 1654861 -3 - 72 tRNA-Gln-TTG - none -
fig|6666666.229913.rna.51 RNA CP016553.1 1655044 1654973 -1 - 72 tRNA-Gln-TTG - none -
fig|6666666.229913.rna.52 RNA CP016553.1 1655158 1655077 -1 - 82 tRNA-Leu-TAG - none -
fig|6666666.229913.rna.53 RNA CP016553.1 1655240 1655167 -2 - 74 tRNA-Met-CAT - none -
fig|6666666.229913.rna.54 RNA CP016553.1 1671075 1671147 3 + 73 tRNA-Asn-GTT - none -
fig|6666666.229913.rna.55 RNA CP016553.1 1732062 1732135 3 + 74 tRNA-Asp-GTC - none -
fig|6666666.229913.rna.56 RNA CP016553.1 1732161 1732234 3 + 74 tRNA-Asp-GTC - none -
fig|6666666.229913.rna.57 RNA CP016553.1 1840636 1840563 -1 - 74 tRNA-Lys-CTT - none -
fig|6666666.229913.rna.58 RNA CP016553.1 1840737 1840665 -3 - 73 tRNA-Lys-TTT - none -
fig|6666666.229913.rna.59 RNA CP016553.1 1840840 1840768 -1 - 73 tRNA-Lys-TTT - none -
fig|6666666.229913.rna.60 RNA CP016553.1 1889398 1889312 -1 - 87 tRNA-Ser-TGA - none -
fig|6666666.229913.rna.61 RNA CP016553.1 1896797 1896869 2 + 73 tRNA-Gly-GCC tRNAs
fig|6666666.229913.rna.62 RNA CP016553.1 1896881 1896951 2 + 71 tRNA-Cys-GCA tRNAs
fig|6666666.229913.rna.63 RNA CP016553.1 1932809 1932737 -2 - 73 tRNA-Ala-GGC tRNAs
fig|6666666.229913.rna.64 RNA CP016553.1 1934622 1934694 3 + 73 tRNA-Val-TAC - none -
fig|6666666.229913.rna.65 RNA CP016553.1 1934736 1934808 3 + 73 tRNA-Val-TAC - none -
fig|6666666.229913.rna.66 RNA CP016553.1 1934839 1934911 1 + 73 tRNA-Val-TAC - none -
fig|6666666.229913.rna.67 RNA CP016553.1 1969560 1969442 -3 - 119 5S RNA - none -
fig|6666666.229913.rna.68 RNA CP016553.1 1972851 1969809 -3 - 3043 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA - none -
fig|6666666.229913.rna.69 RNA CP016553.1 1973206 1973134 -1 - 73 tRNA-Ala-TGC - none -
fig|6666666.229913.rna.70 RNA CP016553.1 1973332 1973259 -1 - 74 tRNA-Ile-GAT - none -
fig|6666666.229913.rna.71 RNA CP016553.1 1974955 1973416 -1 - 1540 Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA - none -
fig|6666666.229913.rna.72 RNA CP016553.1 2180727 2180799 3 + 73 tRNA-Gly-GCC tRNAs
fig|6666666.229913.rna.73 RNA CP016553.1 2180804 2180887 2 + 84 tRNA-Leu-TAA - none -
fig|6666666.229913.rna.74 RNA CP016553.1 2180942 2181014 2 + 73 tRNA-Lys-TTT - none -
fig|6666666.229913.rna.75 RNA CP016553.1 2210370 2210297 -3 - 74 tRNA-Met-CAT - none -