fig|6666666.229915.peg.1 CDS JPZI01000001.1 67 579 1 + 513 Peptide deformylase (EC 3.5.1.88) Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Translation termination factors bacterial
fig|6666666.229915.peg.2 CDS JPZI01000001.1 646 1602 1 + 957 Methionyl-tRNA formyltransferase (EC 2.1.2.9) Conserved gene cluster associated with Met-tRNA formyltransferase;
Translation initiation factors bacterial
fig|6666666.229915.peg.3 CDS JPZI01000001.1 1602 2957 3 + 1356 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) - none -
fig|6666666.229915.peg.4 CDS JPZI01000001.1 2981 4357 2 + 1377 Trk system potassium uptake protein TrkA Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Hyperosmotic potassium uptake;
Potassium homeostasis;
Potassium homeostasis
fig|6666666.229915.peg.5 CDS JPZI01000001.1 4467 4862 3 + 396 Large-conductance mechanosensitive channel Potassium homeostasis
fig|6666666.229915.peg.6 CDS JPZI01000001.1 4957 5391 1 + 435 Ribonuclease E inhibitor RraB RNA processing and degradation, bacterial
fig|6666666.229915.peg.7 CDS JPZI01000001.1 5442 6161 3 + 720 probable periplasmic protein NMA1059 - none -
fig|6666666.229915.peg.8 CDS JPZI01000001.1 6256 6864 1 + 609 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) G3E family of P-loop GTPases (metallocenter biosynthesis);
Peptidyl-prolyl cis-trans isomerase;
Potassium homeostasis
fig|6666666.229915.peg.9 CDS JPZI01000001.1 7138 7302 1 + 165 Mobile element protein - none -
fig|6666666.229915.peg.10 CDS JPZI01000001.1 7323 7475 3 + 153 Mobile element protein - none -
fig|6666666.229915.peg.11 CDS JPZI01000001.1 7506 8042 3 + 537 Mobile element protein - none -
fig|6666666.229915.peg.12 CDS JPZI01000001.1 9142 8099 -1 - 1044 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) LOS core oligosaccharide biosynthesis
fig|6666666.229915.peg.13 CDS JPZI01000001.1 10173 9247 -3 - 927 ADP-L-glycero-D-manno-heptose-6-epimerase (EC 5.1.3.20) LOS core oligosaccharide biosynthesis
fig|6666666.229915.peg.14 CDS JPZI01000001.1 10453 11229 1 + 777 Protein HI0205 precursor - none -
fig|6666666.229915.peg.15 CDS JPZI01000001.1 11256 13070 3 + 1815 5@1-nucleotidase (EC 3.1.3.5); NAD pyrophosphatase, periplasmic (EC 3.6.1.22) Purine conversions;
pyrimidine conversions
fig|6666666.229915.peg.16 CDS JPZI01000001.1 13500 13177 -3 - 324 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) CBSS-498211.3.peg.1415;
Conserved gene cluster associated with Met-tRNA formyltransferase;
RNA methylation
fig|6666666.229915.peg.17 CDS JPZI01000001.1 13874 13557 -2 - 318 Mannose-6-phosphate isomerase (EC 5.3.1.8) Mannose Metabolism
fig|6666666.229915.peg.18 CDS JPZI01000001.1 16687 13889 -1 - 2799 DNA polymerase I (EC 2.7.7.7) DNA Repair Base Excision
fig|6666666.229915.peg.19 CDS JPZI01000001.1 16904 17467 2 + 564 Outer membrane protein 18/16 - none -
fig|6666666.229915.peg.20 CDS JPZI01000001.1 17570 17800 2 + 231 FIG00696102: hypothetical protein - none -
fig|6666666.229915.peg.21 CDS JPZI01000001.1 17810 19825 2 + 2016 ATP-dependent DNA helicase Rep DNA repair, bacterial UvrD and related helicases
fig|6666666.229915.peg.22 CDS JPZI01000001.1 20721 20341 -3 - 381 FIG00782409: hypothetical protein - none -
fig|6666666.229915.peg.23 CDS JPZI01000001.1 20849 21451 2 + 603 Putative phosphatase YqaB 2-phosphoglycolate salvage
fig|6666666.229915.peg.24 CDS JPZI01000001.1 21451 22056 1 + 606 Galactoside O-acetyltransferase (EC 2.3.1.18) Lactose utilization
fig|6666666.229915.peg.25 CDS JPZI01000001.1 22059 22544 3 + 486 Putative membrane protein - none -
fig|6666666.229915.peg.26 CDS JPZI01000001.1 22757 23263 2 + 507 S-ribosylhomocysteine lyase (EC 4.4.1.21) / Autoinducer-2 production protein LuxS Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon);
Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229915.peg.27 CDS JPZI01000001.1 24242 23583 -2 - 660 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses;
Ribosome biogenesis bacterial;
tRNA modification Bacteria
fig|6666666.229915.peg.28 CDS JPZI01000001.1 24623 25312 2 + 690 Ribosyl nicotinamide transporter, PnuC-like NAD and NADP cofactor biosynthesis global
fig|6666666.229915.peg.29 CDS JPZI01000001.1 26094 25387 -3 - 708 tRNA (adenine37-N(6))-methyltransferase TrmN6 (EC 2.1.1.223) RNA methylation
fig|6666666.229915.peg.30 CDS JPZI01000001.1 26197 26069 -1 - 129 hypothetical protein - none -
fig|6666666.229915.peg.31 CDS JPZI01000001.1 26184 27515 3 + 1332 ATP-dependent RNA helicase SrmB - none -
fig|6666666.229915.peg.32 CDS JPZI01000001.1 27541 27711 1 + 171 Catalase (EC 1.11.1.6) Oxidative stress;
Protection from Reactive Oxygen Species
fig|6666666.229915.peg.33 CDS JPZI01000001.1 27911 29212 2 + 1302 Predicted ATPase (AAA+ superfamily) - none -
fig|6666666.229915.peg.34 CDS JPZI01000001.1 29271 30671 3 + 1401 USG protein - none -
fig|6666666.229915.peg.35 CDS JPZI01000001.1 31184 31828 2 + 645 hypothetical protein - none -
fig|6666666.229915.peg.36 CDS JPZI01000001.1 32548 31916 -1 - 633 Pyridoxamine 5@1-phosphate oxidase (EC 1.4.3.5) Pyridoxin (Vitamin B6) Biosynthesis
fig|6666666.229915.peg.37 CDS JPZI01000001.1 32719 34044 1 + 1326 Hexose phosphate uptake regulatory protein UhpC - none -
fig|6666666.229915.peg.38 CDS JPZI01000001.1 34054 34200 1 + 147 hypothetical protein - none -
fig|6666666.229915.peg.39 CDS JPZI01000001.1 34456 34163 -1 - 294 AagD - none -
fig|6666666.229915.peg.40 CDS JPZI01000001.1 35694 34459 -3 - 1236 Biofilm PGA synthesis N-glycosyltransferase PgaC (EC 2.4.-.-) Biofilm Adhesin Biosynthesis
fig|6666666.229915.peg.41 CDS JPZI01000001.1 37619 35703 -2 - 1917 Biofilm PGA synthesis deacetylase PgaB (EC 3.-) Biofilm Adhesin Biosynthesis
fig|6666666.229915.peg.42 CDS JPZI01000001.1 40058 37635 -2 - 2424 Biofilm PGA outer membrane secretin PgaA Biofilm Adhesin Biosynthesis
fig|6666666.229915.peg.43 CDS JPZI01000001.1 41044 40325 -1 - 720 Purine nucleoside phosphorylase (EC 2.4.2.1) Adenosyl nucleosidases;
Deoxyribose and Deoxynucleoside Catabolism;
Purine conversions;
pyrimidine conversions
fig|6666666.229915.peg.44 CDS JPZI01000001.1 42422 41172 -2 - 1251 Na+ dependent nucleoside transporter NupC Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.229915.peg.45 CDS JPZI01000001.1 43888 42713 -1 - 1176 Cof protein - none -
fig|6666666.229915.peg.46 CDS JPZI01000001.1 45104 44268 -2 - 837 PTS system, mannose-specific IID component - none -
fig|6666666.229915.peg.47 CDS JPZI01000001.1 45915 45118 -3 - 798 PTS system, mannose-specific IIC component (EC 2.7.1.69) Mannose Metabolism;
Sialic Acid Metabolism
fig|6666666.229915.peg.48 CDS JPZI01000001.1 46910 45933 -2 - 978 PTS system, mannose-specific IIA component / PTS system, mannose-specific IIB component (EC 2.7.1.69) Mannose Metabolism;
Sialic Acid Metabolism
fig|6666666.229915.peg.49 CDS JPZI01000001.1 47796 47212 -3 - 585 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) CBSS-266117.6.peg.1260;
CBSS-269801.1.peg.1715;
RNA methylation
fig|6666666.229915.peg.50 CDS JPZI01000001.1 47812 49206 1 + 1395 Signal recognition particle receptor protein FtsY (=alpha subunit) (TC 3.A.5.1.1) Bacterial Cell Division;
Bacterial signal recognition particle (SRP);
Universal GTPases
fig|6666666.229915.peg.51 CDS JPZI01000001.1 49379 50383 2 + 1005 Tryptophanyl-tRNA synthetase (EC 6.1.1.2) tRNA aminoacylation, Trp
fig|6666666.229915.peg.52 CDS JPZI01000001.1 51114 50470 -3 - 645 3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster;
riboflavin to FAD
fig|6666666.229915.peg.53 CDS JPZI01000001.1 51348 51142 -3 - 207 hypothetical protein - none -
fig|6666666.229915.peg.54 CDS JPZI01000001.1 52568 51795 -2 - 774 Zn-dependent protease with chaperone function - none -
fig|6666666.229915.peg.55 CDS JPZI01000001.1 53172 52645 -3 - 528 Inorganic pyrophosphatase (EC 3.6.1.1) Phosphate metabolism
fig|6666666.229915.peg.56 CDS JPZI01000001.1 53335 54579 1 + 1245 Tryptophan-specific transport protein - none -
fig|6666666.229915.peg.57 CDS JPZI01000001.1 54881 55198 2 + 318 hypothetical protein - none -
fig|6666666.229915.peg.58 CDS JPZI01000001.1 55484 55600 2 + 117 hypothetical protein - none -
fig|6666666.229915.peg.59 CDS JPZI01000001.1 56393 55686 -2 - 708 NMN phosphatase (EC 3.1.3.5); Class B acid phosphatase precursor (EC 3.1.3.2) NAD and NADP cofactor biosynthesis global
fig|6666666.229915.peg.60 CDS JPZI01000001.1 56610 57137 3 + 528 ATP-dependent protease HslV (EC 3.4.25.-) Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229915.peg.61 CDS JPZI01000001.1 57159 58490 3 + 1332 ATP-dependent hsl protease ATP-binding subunit HslU Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229915.peg.62 CDS JPZI01000001.1 58556 60139 2 + 1584 Nickel ABC transporter, periplasmic nickel-binding protein NikA (TC 3.A.1.5.3) Transport of Nickel and Cobalt
fig|6666666.229915.peg.63 CDS JPZI01000001.1 60205 60981 1 + 777 Nucleoside ABC transporter, periplasmic nucleoside-binding protein - none -
fig|6666666.229915.peg.64 CDS JPZI01000001.1 60999 61493 3 + 495 Protein yfbU - none -
fig|6666666.229915.peg.65 CDS JPZI01000001.1 62260 61577 -1 - 684 Phosphoglycerate mutase (EC 5.4.2.1) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis;
Phosphoglycerate mutase protein family
fig|6666666.229915.peg.66 CDS JPZI01000001.1 62321 62461 2 + 141 hypothetical protein - none -
fig|6666666.229915.peg.67 CDS JPZI01000001.1 62564 64222 2 + 1659 Phosphoglucosamine mutase (EC 5.4.2.10) Sialic Acid Metabolism;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229915.peg.68 CDS JPZI01000001.1 64436 64257 -2 - 180 hypothetical protein - none -
fig|6666666.229915.peg.69 CDS JPZI01000001.1 64428 65687 3 + 1260 Periplasmic septal ring factor with murein hydrolase activity EnvC/YibP CBSS-224911.1.peg.435;
Glutaredoxins;
Phosphoglycerate mutase protein family
fig|6666666.229915.peg.70 CDS JPZI01000001.1 65684 66511 2 + 828 Putative periplasmic protein YibQ, distant homology with nucleoside diphosphatase and polysaccharide deacetylase CBSS-224911.1.peg.435;
Phosphoglycerate mutase protein family
fig|6666666.229915.peg.71 CDS JPZI01000001.1 68058 66523 -3 - 1536 MG(2+) CHELATASE FAMILY PROTEIN / ComM-related protein - none -
fig|6666666.229915.peg.72 CDS JPZI01000001.1 68787 68173 -3 - 615 GTP-binding protein EngB Universal GTPases
fig|6666666.229915.peg.73 CDS JPZI01000001.1 68797 68925 1 + 129 hypothetical protein - none -
fig|6666666.229915.peg.74 CDS JPZI01000001.1 68922 69797 3 + 876 Membrane protein LAPB - none -
fig|6666666.229915.peg.75 CDS JPZI01000001.1 70369 69893 -1 - 477 tRNA (cytidine(34)-2@1-O)-methyltransferase (EC 2.1.1.207) RNA methylation
fig|6666666.229915.peg.76 CDS JPZI01000001.1 70985 70488 -2 - 498 Phospholipid-binding protein - none -
fig|6666666.229915.peg.77 CDS JPZI01000001.1 71933 71091 -2 - 843 Methionine ABC transporter substrate-binding protein Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229915.peg.78 CDS JPZI01000001.1 72645 71968 -3 - 678 Methionine ABC transporter permease protein Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229915.peg.79 CDS JPZI01000001.1 73672 72635 -1 - 1038 Methionine ABC transporter ATP-binding protein Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229915.peg.80 CDS JPZI01000002.1 829 2 -1 - 828 Glutamate racemase (EC 5.1.1.3) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Peptidoglycan Biosynthesis
fig|6666666.229915.peg.81 CDS JPZI01000002.1 1357 860 -1 - 498 Chorismate--pyruvate lyase (EC 4.1.3.40) Ubiquinone Biosynthesis
fig|6666666.229915.peg.82 CDS JPZI01000002.1 3431 1350 -2 - 2082 ATP-dependent DNA helicase RecG (EC 3.6.1.-) - none -
fig|6666666.229915.peg.83 CDS JPZI01000002.1 5553 3433 -3 - 2121 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II / Guanosine-3@1,5@1-bis(diphosphate) 3@1-pyrophosphohydrolase (EC 3.1.7.2) CBSS-176299.4.peg.1292;
CBSS-176299.4.peg.1292;
Stringent Response, (p)ppGpp metabolism;
Stringent Response, (p)ppGpp metabolism
fig|6666666.229915.peg.84 CDS JPZI01000002.1 5865 5599 -3 - 267 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) CBSS-176299.4.peg.1292;
RNA polymerase bacterial
fig|6666666.229915.peg.85 CDS JPZI01000002.1 6560 5922 -2 - 639 Guanylate kinase (EC 2.7.4.8) CBSS-323097.3.peg.2594;
Purine conversions
fig|6666666.229915.peg.86 CDS JPZI01000002.1 6801 7805 3 + 1005 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis;
Pyridoxin (Vitamin B6) Biosynthesis
fig|6666666.229915.peg.87 CDS JPZI01000002.1 8314 7853 -1 - 462 conserved hypothetical protein; possible membrane protein - none -
fig|6666666.229915.peg.88 CDS JPZI01000002.1 8387 8818 2 + 432 Putative oligoketide cyclase/lipid transport protein, similarity with yeast ubiquinone-binding protein YOL008W - none -
fig|6666666.229915.peg.89 CDS JPZI01000002.1 8811 9104 3 + 294 UPF0125 protein yfjF - none -
fig|6666666.229915.peg.90 CDS JPZI01000002.1 9138 10331 3 + 1194 FIG074102: hypothetical protein - none -
fig|6666666.229915.peg.91 CDS JPZI01000002.1 10336 11670 1 + 1335 Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) DNA repair, bacterial;
Purine salvage cluster
fig|6666666.229915.peg.92 CDS JPZI01000002.1 12530 11676 -2 - 855 Hypothetical ATP-binding protein UPF0042, contains P-loop - none -
fig|6666666.229915.peg.93 CDS JPZI01000002.1 13091 12558 -2 - 534 PTS IIA-like nitrogen-regulatory protein PtsN - none -
fig|6666666.229915.peg.94 CDS JPZI01000002.1 13820 13095 -2 - 726 Lipopolysaccharide ABC transporter, ATP-binding protein LptB KDO2-Lipid A biosynthesis;
Lipopolysaccharide assembly
fig|6666666.229915.peg.95 CDS JPZI01000002.1 14344 13826 -1 - 519 LptA, protein essential for LPS transport across the periplasm KDO2-Lipid A biosynthesis;
Lipopolysaccharide assembly
fig|6666666.229915.peg.96 CDS JPZI01000002.1 14900 14325 -2 - 576 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters Lipopolysaccharide assembly
fig|6666666.229915.peg.97 CDS JPZI01000002.1 15185 15982 2 + 798 Uncharacterized ABC transporter, ATP-binding protein YrbF CBSS-12149.1.peg.3301;
Lipopolysaccharide assembly
fig|6666666.229915.peg.98 CDS JPZI01000002.1 15976 16761 1 + 786 Uncharacterized ABC transporter, permease component YrbE CBSS-12149.1.peg.3301;
Lipopolysaccharide assembly
fig|6666666.229915.peg.99 CDS JPZI01000002.1 16784 17293 2 + 510 Uncharacterized ABC transporter, periplasmic component YrbD CBSS-12149.1.peg.3301;
Lipopolysaccharide assembly
fig|6666666.229915.peg.100 CDS JPZI01000002.1 17322 17963 3 + 642 Uncharacterized ABC transporter, auxiliary component YrbC CBSS-12149.1.peg.3301;
Lipopolysaccharide assembly
fig|6666666.229915.peg.101 CDS JPZI01000002.1 18057 18326 3 + 270 Uncharacterized protein YrbB CBSS-12149.1.peg.3301
fig|6666666.229915.peg.102 CDS JPZI01000002.1 18326 18583 2 + 258 YrbA protein Broadly distributed proteins not in subsystems;
CBSS-12149.1.peg.3301
fig|6666666.229915.peg.103 CDS JPZI01000002.1 18600 19871 3 + 1272 UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7) CBSS-12149.1.peg.3301;
Peptidoglycan Biosynthesis;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229915.peg.104 CDS JPZI01000002.1 20469 21386 3 + 918 Mobile element protein - none -
fig|6666666.229915.peg.105 CDS JPZI01000002.1 22544 22254 -2 - 291 FIG00696346: hypothetical protein - none -
fig|6666666.229915.peg.106 CDS JPZI01000002.1 22678 22541 -1 - 138 hypothetical protein - none -
fig|6666666.229915.peg.107 CDS JPZI01000002.1 22748 24178 2 + 1431 Long-chain fatty acid transport protein - none -
fig|6666666.229915.peg.108 CDS JPZI01000002.1 24254 24793 2 + 540 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) DNA repair, bacterial
fig|6666666.229915.peg.109 CDS JPZI01000002.1 24790 25458 1 + 669 DNA mismatch repair endonuclease MutH DNA repair, bacterial
fig|6666666.229915.peg.110 CDS JPZI01000002.1 25523 26248 2 + 726 Integral membrane protein TerC - none -
fig|6666666.229915.peg.111 CDS JPZI01000002.1 27779 26370 -2 - 1410 Glutamine synthetase type I (EC 6.3.1.2) Ammonia assimilation;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Glutamine synthetases;
Peptidoglycan Biosynthesis
fig|6666666.229915.peg.112 CDS JPZI01000002.1 28167 30020 3 + 1854 GTP-binding protein TypA/BipA Universal GTPases
fig|6666666.229915.peg.113 CDS JPZI01000002.1 30235 33027 1 + 2793 Signal recognition particle receptor protein FtsY (=alpha subunit) (TC 3.A.5.1.1) Bacterial Cell Division;
Bacterial signal recognition particle (SRP);
Universal GTPases
fig|6666666.229915.peg.114 CDS JPZI01000002.1 33555 33091 -3 - 465 Thiol peroxidase, Bcp-type (EC 1.11.1.15) CBSS-316057.3.peg.3521;
Thioredoxin-disulfide reductase
fig|6666666.229915.peg.115 CDS JPZI01000002.1 33713 34606 2 + 894 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229915.peg.116 CDS JPZI01000002.1 34719 35723 3 + 1005 Outer membrane protein NlpB, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and YfgL); Lipoprotein-34 precursor Lipopolysaccharide assembly
fig|6666666.229915.peg.117 CDS JPZI01000002.1 35858 37369 2 + 1512 L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1) / Osmotic adaptation Choline and Betaine Uptake and Betaine Biosynthesis
fig|6666666.229915.peg.118 CDS JPZI01000002.1 37581 37694 3 + 114 hypothetical protein - none -
fig|6666666.229915.peg.119 CDS JPZI01000002.1 37684 38520 1 + 837 L-proline glycine betaine ABC transport system permease protein ProV (TC 3.A.1.12.1) Choline and Betaine Uptake and Betaine Biosynthesis
fig|6666666.229915.peg.120 CDS JPZI01000002.1 39264 38569 -3 - 696 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC A Hypothetical Protein Related to Proline Metabolism;
CBSS-630.2.peg.3360
fig|6666666.229915.peg.121 CDS JPZI01000002.1 40645 39257 -1 - 1389 Nicotinamide phosphoribosyltransferase (EC 2.4.2.12) NAD and NADP cofactor biosynthesis global
fig|6666666.229915.peg.122 CDS JPZI01000002.1 40779 40910 3 + 132 hypothetical protein - none -
fig|6666666.229915.peg.123 CDS JPZI01000002.1 40999 43446 1 + 2448 Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) CBSS-216591.1.peg.168;
Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch;
Methionine Biosynthesis;
Threonine and Homoserine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229915.peg.124 CDS JPZI01000002.1 43458 44402 3 + 945 Homoserine kinase (EC 2.7.1.39) CBSS-269482.1.peg.1294;
Methionine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229915.peg.125 CDS JPZI01000002.1 44430 44870 3 + 441 hypothetical protein - none -
fig|6666666.229915.peg.126 CDS JPZI01000002.1 44926 46200 1 + 1275 Threonine synthase (EC 4.2.3.1) Threonine and Homoserine Biosynthesis
fig|6666666.229915.peg.127 CDS JPZI01000002.1 46258 46977 1 + 720 4@1-phosphopantetheinyl transferase (EC 2.7.8.-) Fatty Acid Biosynthesis FASII
fig|6666666.229915.peg.128 CDS JPZI01000002.1 47073 48326 3 + 1254 HflK protein Hfl operon;
Scaffold proteins for [4Fe-4S] cluster assembly (MRP family)
fig|6666666.229915.peg.129 CDS JPZI01000002.1 48326 49213 2 + 888 HflC protein Hfl operon;
Scaffold proteins for [4Fe-4S] cluster assembly (MRP family)
fig|6666666.229915.peg.130 CDS JPZI01000002.1 49468 49352 -1 - 117 hypothetical protein - none -
fig|6666666.229915.peg.131 CDS JPZI01000002.1 49674 49853 3 + 180 hypothetical protein - none -
fig|6666666.229915.peg.132 CDS JPZI01000002.1 50989 50072 -1 - 918 Mobile element protein - none -
fig|6666666.229915.peg.133 CDS JPZI01000002.1 51400 51729 1 + 330 DNA uptake protein and related DNA-binding proteins - none -
fig|6666666.229915.peg.134 CDS JPZI01000002.1 51769 52434 1 + 666 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) Heat shock dnaK gene cluster extended;
Housecleaning nucleoside triphosphate pyrophosphatases
fig|6666666.229915.peg.135 CDS JPZI01000002.1 52473 52796 3 + 324 PlcB, ORFX, ORFP, ORFB, ORFA, ldh gene - none -
fig|6666666.229915.peg.136 CDS JPZI01000002.1 52798 53967 1 + 1170 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB CBSS-630.2.peg.3360;
Heat shock dnaK gene cluster extended;
Heme and Siroheme Biosynthesis;
Queuosine-Archaeosine Biosynthesis
fig|6666666.229915.peg.137 CDS JPZI01000002.1 54067 54723 1 + 657 Ribose 5-phosphate isomerase A (EC 5.3.1.6) D-ribose utilization;
Pentose phosphate pathway
fig|6666666.229915.peg.138 CDS JPZI01000002.1 54743 55975 2 + 1233 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) Glycine and Serine Utilization;
Pyridoxin (Vitamin B6) Biosynthesis;
Serine Biosynthesis
fig|6666666.229915.peg.139 CDS JPZI01000002.1 56272 57318 1 + 1047 iron chelatin ABC transporter periplasmic-binding protein - none -
fig|6666666.229915.peg.140 CDS JPZI01000002.1 58044 57403 -3 - 642 4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) D-Galacturonate and D-Glucuronate Utilization;
Entner-Doudoroff Pathway
fig|6666666.229915.peg.141 CDS JPZI01000002.1 59456 58053 -2 - 1404 Uronate isomerase (EC 5.3.1.12) D-Galacturonate and D-Glucuronate Utilization
fig|6666666.229915.peg.142 CDS JPZI01000002.1 60312 59467 -3 - 846 D-mannonate oxidoreductase (EC 1.1.1.57) D-Galacturonate and D-Glucuronate Utilization
fig|6666666.229915.peg.143 CDS JPZI01000002.1 61268 60324 -2 - 945 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) D-Galacturonate and D-Glucuronate Utilization;
D-gluconate and ketogluconates metabolism;
Entner-Doudoroff Pathway
fig|6666666.229915.peg.144 CDS JPZI01000002.1 62311 61319 -1 - 993 TRAP-type C4-dicarboxylate transport system, periplasmic component TRAP Transporter collection
fig|6666666.229915.peg.145 CDS JPZI01000002.1 63024 64325 3 + 1302 TRAP-type C4-dicarboxylate transport system, large permease component TRAP Transporter collection
fig|6666666.229915.peg.146 CDS JPZI01000002.1 64349 66724 2 + 2376 Alpha-glucosidase (EC 3.2.1.20) D-Galacturonate and D-Glucuronate Utilization;
Maltose and Maltodextrin Utilization
fig|6666666.229915.peg.147 CDS JPZI01000002.1 66740 67495 2 + 756 Hexuronate utilization operon transcriptional repressor ExuR D-Galacturonate and D-Glucuronate Utilization
fig|6666666.229915.peg.148 CDS JPZI01000002.1 67516 68700 1 + 1185 Mannonate dehydratase (EC 4.2.1.8) D-Galacturonate and D-Glucuronate Utilization
fig|6666666.229915.peg.149 CDS JPZI01000002.1 68726 69661 2 + 936 hypothetical protein - none -
fig|6666666.229915.peg.150 CDS JPZI01000002.1 72247 70493 -1 - 1755 Putative sulfate permease - none -
fig|6666666.229915.peg.151 CDS JPZI01000002.1 72641 72522 -2 - 120 hypothetical protein - none -
fig|6666666.229915.peg.152 CDS JPZI01000002.1 72685 75102 1 + 2418 ATP-dependent protease La (EC 3.4.21.53) Type I Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229915.peg.153 CDS JPZI01000002.1 77013 75163 -3 - 1851 RNA polymerase sigma factor RpoD CBSS-349161.4.peg.2417;
Macromolecular synthesis operon;
Transcription initiation, bacterial sigma factors
fig|6666666.229915.peg.154 CDS JPZI01000002.1 78846 77089 -3 - 1758 DNA primase (EC 2.7.7.-) CBSS-349161.4.peg.2417;
Macromolecular synthesis operon
fig|6666666.229915.peg.155 CDS JPZI01000002.1 79183 78968 -1 - 216 SSU ribosomal protein S21p Macromolecular synthesis operon;
Ribosome SSU bacterial
fig|6666666.229915.peg.156 CDS JPZI01000002.1 79218 79385 3 + 168 hypothetical protein - none -
fig|6666666.229915.peg.157 CDS JPZI01000002.1 79409 80437 2 + 1029 TsaD/Kae1/Qri7 protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Macromolecular synthesis operon;
YgjD and YeaZ;
YrdC-YciO-Sua5 protein family
fig|6666666.229915.peg.158 CDS JPZI01000002.1 80502 80735 3 + 234 unknown - none -
fig|6666666.229915.peg.159 CDS JPZI01000002.1 80738 81316 2 + 579 Thymidine kinase (EC 2.7.1.21) pyrimidine conversions
fig|6666666.229915.peg.160 CDS JPZI01000002.1 81384 81743 3 + 360 Mobile element protein - none -
fig|6666666.229915.peg.161 CDS JPZI01000002.1 81764 82561 2 + 798 Mobile element protein - none -
fig|6666666.229915.peg.162 CDS JPZI01000002.1 84670 82658 -1 - 2013 DNA ligase (EC 6.5.1.2) DNA Repair Base Excision
fig|6666666.229915.peg.163 CDS JPZI01000002.1 85817 84777 -2 - 1041 Cell division protein ZipA Bacterial Cytoskeleton
fig|6666666.229915.peg.164 CDS JPZI01000002.1 85958 86782 2 + 825 Sulfate transporter, CysZ-type Cysteine Biosynthesis
fig|6666666.229915.peg.165 CDS JPZI01000002.1 86884 87831 1 + 948 Cysteine synthase (EC 2.5.1.47) Cysteine Biosynthesis;
Methionine Biosynthesis
fig|6666666.229915.peg.166 CDS JPZI01000002.1 88173 88051 -3 - 123 hypothetical protein - none -
fig|6666666.229915.peg.167 CDS JPZI01000002.1 88866 88285 -3 - 582 Hypothetical protein VC0266 (sugar utilization related?) VC0266
fig|6666666.229915.peg.168 CDS JPZI01000002.1 89149 88961 -1 - 189 hypothetical protein - none -
fig|6666666.229915.peg.169 CDS JPZI01000002.1 90293 89202 -2 - 1092 GTP-binding and nucleic acid-binding protein YchF Universal GTPases
fig|6666666.229915.peg.170 CDS JPZI01000002.1 90929 90345 -2 - 585 Peptidyl-tRNA hydrolase (EC 3.1.1.29) Cell division-ribosomal stress proteins cluster;
Sporulation-associated proteins with broader functions;
Transcription repair cluster;
Translation termination factors bacterial
fig|6666666.229915.peg.171 CDS JPZI01000003.1 412 17 -1 - 396 hypothetical protein - none -
fig|6666666.229915.peg.172 CDS JPZI01000003.1 1270 1151 -1 - 120 hypothetical protein - none -
fig|6666666.229915.peg.173 CDS JPZI01000003.1 1341 2294 3 + 954 Tagatose 1,6-bisphosphate aldolase (EC 4.1.2.40) - none -
fig|6666666.229915.peg.174 CDS JPZI01000003.1 2308 3600 1 + 1293 Tagatose-6-phosphate kinase GatZ (EC 2.7.1.144) D-Tagatose and Galactitol Utilization
fig|6666666.229915.peg.175 CDS JPZI01000003.1 3578 4027 2 + 450 PTS system, galactitol-specific IIA component (EC 2.7.1.69) D-Tagatose and Galactitol Utilization
fig|6666666.229915.peg.176 CDS JPZI01000003.1 4046 4330 2 + 285 PTS system, galactitol-specific IIB component (EC 2.7.1.69) D-Tagatose and Galactitol Utilization
fig|6666666.229915.peg.177 CDS JPZI01000003.1 4336 5700 1 + 1365 PTS system, galactitol-specific IIC component (EC 2.7.1.69) D-Tagatose and Galactitol Utilization
fig|6666666.229915.peg.178 CDS JPZI01000003.1 5723 6766 2 + 1044 Galactitol-1-phosphate 5-dehydrogenase (EC 1.1.1.251) D-Tagatose and Galactitol Utilization
fig|6666666.229915.peg.179 CDS JPZI01000003.1 6833 7591 2 + 759 Galactitol utilization operon repressor D-Tagatose and Galactitol Utilization
fig|6666666.229915.peg.180 CDS JPZI01000003.1 9568 7715 -1 - 1854 1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis;
Pyridoxin (Vitamin B6) Biosynthesis;
Thiamin biosynthesis
fig|6666666.229915.peg.181 CDS JPZI01000003.1 10545 9655 -3 - 891 Octaprenyl diphosphate synthase (EC 2.5.1.90) / Dimethylallyltransferase (EC 2.5.1.1) / (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10) / Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29) Isoprenoid Biosynthesis;
Isoprenoid Biosynthesis;
Isoprenoid Biosynthesis: Interconversions;
Isoprenoinds for Quinones;
Isoprenoinds for Quinones;
Isoprenoinds for Quinones;
Polyprenyl Diphosphate Biosynthesis;
Polyprenyl Diphosphate Biosynthesis
fig|6666666.229915.peg.182 CDS JPZI01000003.1 10801 10556 -1 - 246 Exodeoxyribonuclease VII small subunit (EC 3.1.11.6) DNA repair, bacterial;
Purine salvage cluster
fig|6666666.229915.peg.183 CDS JPZI01000003.1 11026 11922 1 + 897 Acetyl-coenzyme A carboxyl transferase beta chain (EC 6.4.1.2) Fatty Acid Biosynthesis FASII
fig|6666666.229915.peg.184 CDS JPZI01000003.1 11945 13291 2 + 1347 Dihydrofolate synthase (EC 6.3.2.12) @ Folylpolyglutamate synthase (EC 6.3.2.17) Folate Biosynthesis;
Folate Biosynthesis
fig|6666666.229915.peg.185 CDS JPZI01000003.1 13991 13350 -2 - 642 Hypothetical, related to broad specificity phosphatases COG0406 CBSS-196164.1.peg.461
fig|6666666.229915.peg.186 CDS JPZI01000003.1 15511 14054 -1 - 1458 Cardiolipin synthetase (EC 2.7.8.-) Cardiolipin synthesis;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229915.peg.187 CDS JPZI01000003.1 16433 15525 -2 - 909 Putative surface protein - none -
fig|6666666.229915.peg.188 CDS JPZI01000003.1 16498 17241 1 + 744 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses;
Ribosome biogenesis bacterial;
tRNA modification Bacteria
fig|6666666.229915.peg.189 CDS JPZI01000003.1 17286 18149 3 + 864 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229915.peg.190 CDS JPZI01000003.1 18232 18555 1 + 324 Alkylphosphonate utilization operon protein PhnA - none -
fig|6666666.229915.peg.191 CDS JPZI01000003.1 18803 20212 2 + 1410 Esterase/lipase - none -
fig|6666666.229915.peg.192 CDS JPZI01000003.1 21838 20465 -1 - 1374 RND efflux system, outer membrane lipoprotein CmeC Multidrug Resistance Efflux Pumps
fig|6666666.229915.peg.193 CDS JPZI01000003.1 23848 21914 -1 - 1935 Macrolide export ATP-binding/permease protein MacB (EC 3.6.3.-) Multidrug Resistance Efflux Pumps
fig|6666666.229915.peg.194 CDS JPZI01000003.1 25046 23868 -2 - 1179 Macrolide-specific efflux protein MacA Multidrug Resistance Efflux Pumps
fig|6666666.229915.peg.195 CDS JPZI01000003.1 25247 26938 2 + 1692 Glutaminyl-tRNA synthetase (EC 6.1.1.18) tRNA aminoacylation, Glu and Gln
fig|6666666.229915.peg.196 CDS JPZI01000003.1 27192 27335 3 + 144 HigB toxin protein Toxin-antitoxin replicon stabilization systems
fig|6666666.229915.peg.197 CDS JPZI01000003.1 27345 27641 3 + 297 HigA protein (antitoxin to HigB) Toxin-antitoxin replicon stabilization systems
fig|6666666.229915.peg.198 CDS JPZI01000003.1 27757 27638 -1 - 120 hypothetical protein - none -
fig|6666666.229915.peg.199 CDS JPZI01000003.1 27711 28160 3 + 450 YcgN (Fragment) CBSS-243277.1.peg.4359
fig|6666666.229915.peg.200 CDS JPZI01000003.1 28251 28799 3 + 549 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) Glycogen metabolism;
Glycogen metabolism cluster;
Maltose and Maltodextrin Utilization;
Maltose utilization cluster
fig|6666666.229915.peg.201 CDS JPZI01000003.1 28812 31007 3 + 2196 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) Glycogen metabolism;
Glycogen metabolism cluster
fig|6666666.229915.peg.202 CDS JPZI01000003.1 31004 33013 2 + 2010 Glycogen debranching enzyme (EC 3.2.1.-) Glycogen metabolism;
Glycogen metabolism cluster
fig|6666666.229915.peg.203 CDS JPZI01000003.1 33040 34350 1 + 1311 Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27) Glycogen metabolism;
Glycogen metabolism cluster
fig|6666666.229915.peg.204 CDS JPZI01000003.1 34557 35996 3 + 1440 Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21) Glycogen metabolism;
Glycogen metabolism cluster
fig|6666666.229915.peg.205 CDS JPZI01000003.1 36120 38585 3 + 2466 Glycogen phosphorylase (EC 2.4.1.1) Glycogen metabolism;
Glycogen metabolism cluster;
Maltose and Maltodextrin Utilization
fig|6666666.229915.peg.206 CDS JPZI01000003.1 38749 38600 -1 - 150 hypothetical protein - none -
fig|6666666.229915.peg.207 CDS JPZI01000003.1 39308 38703 -2 - 606 DedA protein DedA family of inner membrane proteins;
Uptake of selenate and selenite
fig|6666666.229915.peg.208 CDS JPZI01000003.1 39522 39809 3 + 288 LSU ribosomal protein L25p Ribosome LSU bacterial;
Transcription repair cluster
fig|6666666.229915.peg.209 CDS JPZI01000003.1 39964 39848 -1 - 117 hypothetical protein - none -
fig|6666666.229915.peg.210 CDS JPZI01000003.1 39957 40565 3 + 609 lipoprotein HlpB - none -
fig|6666666.229915.peg.211 CDS JPZI01000003.1 40712 41593 2 + 882 Murein-DD-endopeptidase (EC 3.4.99.-) Peptidoglycan Biosynthesis
fig|6666666.229915.peg.212 CDS JPZI01000003.1 41771 43099 2 + 1329 Chromosome partition protein MukF DNA structural proteins, bacterial;
MukBEF Chromosome Condensation
fig|6666666.229915.peg.213 CDS JPZI01000003.1 43203 46664 3 + 3462 Putative 2-acylglycerophosphoethanolamine acyltransferase / acyl-acyl carrier protein synthetase (EC 6.2.1.20) - none -
fig|6666666.229915.peg.214 CDS JPZI01000003.1 46685 47425 2 + 741 Chromosome partition protein MukE DNA structural proteins, bacterial;
MukBEF Chromosome Condensation
fig|6666666.229915.peg.215 CDS JPZI01000003.1 47425 51915 1 + 4491 Chromosome partition protein MukB DNA structural proteins, bacterial;
MukBEF Chromosome Condensation
fig|6666666.229915.peg.216 CDS JPZI01000003.1 52421 53374 2 + 954 Integral membrane protein - none -
fig|6666666.229915.peg.217 CDS JPZI01000003.1 53386 54813 1 + 1428 Exodeoxyribonuclease I (EC 3.1.11.1) DNA Repair Base Excision
fig|6666666.229915.peg.218 CDS JPZI01000003.1 55708 56193 1 + 486 Ferritin-like protein 2 - none -
fig|6666666.229915.peg.219 CDS JPZI01000003.1 56211 56708 3 + 498 Ferritin-like protein 2 - none -
fig|6666666.229915.peg.220 CDS JPZI01000003.1 56937 56770 -3 - 168 hypothetical protein - none -
fig|6666666.229915.peg.221 CDS JPZI01000003.1 57153 57818 3 + 666 Fumarate and nitrate reduction regulatory protein Oxidative stress
fig|6666666.229915.peg.222 CDS JPZI01000003.1 57937 58869 1 + 933 Universal stress protein E Universal stress protein family
fig|6666666.229915.peg.223 CDS JPZI01000003.1 58997 59833 2 + 837 ABC-type Co2+ transport system, periplasmic component - none -
fig|6666666.229915.peg.224 CDS JPZI01000003.1 62526 59920 -3 - 2607 DNA topoisomerase I (EC 5.99.1.2) CBSS-272943.3.peg.1367;
Conserved gene cluster associated with Met-tRNA formyltransferase;
DNA topoisomerases, Type I, ATP-independent
fig|6666666.229915.peg.225 CDS JPZI01000003.1 62625 63521 3 + 897 Transcriptional regulator - none -
fig|6666666.229915.peg.226 CDS JPZI01000003.1 64413 63565 -3 - 849 COG0613, Predicted metal-dependent phosphoesterases (PHP family) YrdC-YciO-Sua5 protein family;
tRNA modification Bacteria
fig|6666666.229915.peg.227 CDS JPZI01000003.1 65433 64414 -3 - 1020 Dihydroorotate dehydrogenase (EC 1.3.3.1) De Novo Pyrimidine Synthesis
fig|6666666.229915.peg.228 CDS JPZI01000003.1 68115 65506 -3 - 2610 Membrane alanine aminopeptidase N (EC 3.4.11.2) Aminopeptidases (EC 3.4.11.-)
fig|6666666.229915.peg.229 CDS JPZI01000003.1 68541 69731 3 + 1191 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229915.peg.230 CDS JPZI01000003.1 70342 69782 -1 - 561 Transcriptional regulator, TetR family - none -
fig|6666666.229915.peg.231 CDS JPZI01000003.1 70490 71470 2 + 981 HlyD family secretion protein - none -
fig|6666666.229915.peg.232 CDS JPZI01000003.1 71473 74217 1 + 2745 ABC-type multidrug transport system, permease component - none -
fig|6666666.229915.peg.233 CDS JPZI01000003.1 74219 75346 2 + 1128 ABC-type multidrug transport system, permease component - none -
fig|6666666.229915.peg.234 CDS JPZI01000003.1 75366 76781 3 + 1416 Outer membrane component of tripartite multidrug resistance system Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria
fig|6666666.229915.peg.235 CDS JPZI01000003.1 76910 77941 2 + 1032 Vitamin B12 ABC transporter, permease component BtuC - none -
fig|6666666.229915.peg.236 CDS JPZI01000003.1 77941 78735 1 + 795 Glutathione synthetase (EC 6.3.2.3) Cluster containing Glutathione synthetase;
Glutathione: Biosynthesis and gamma-glutamyl cycle;
Heat shock dnaK gene cluster extended
fig|6666666.229915.peg.237 CDS JPZI01000003.1 78748 79782 1 + 1035 FIG00362752: hypothetical protein - none -
fig|6666666.229915.peg.238 CDS JPZI01000003.1 79865 80074 2 + 210 Molybdate-binding domain of ModE Molybdenum cofactor biosynthesis
fig|6666666.229915.peg.239 CDS JPZI01000003.1 82596 80206 -3 - 2391 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins Ton and Tol transport systems
fig|6666666.229915.peg.240 CDS JPZI01000003.1 83438 82689 -2 - 750 ABC transporter ATP-binding protein - none -
fig|6666666.229915.peg.241 CDS JPZI01000003.1 84448 83435 -1 - 1014 Vitamin B12 ABC transporter, permease component BtuC - none -
fig|6666666.229915.peg.242 CDS JPZI01000003.1 85452 84448 -3 - 1005 ABC transporter, solute-binding protein - none -
fig|6666666.229915.peg.243 CDS JPZI01000003.1 85662 86159 3 + 498 FIG00697418: hypothetical protein - none -
fig|6666666.229915.peg.244 CDS JPZI01000003.1 86161 88173 1 + 2013 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins Ton and Tol transport systems
fig|6666666.229915.peg.245 CDS JPZI01000003.1 88679 88263 -2 - 417 putative membrane protein - none -
fig|6666666.229915.peg.246 CDS JPZI01000003.1 88870 89799 1 + 930 tRNA(Cytosine32)-2-thiocytidine synthetase CBSS-326442.4.peg.1852;
tRNA modification Bacteria
fig|6666666.229915.peg.247 CDS JPZI01000003.1 90383 89895 -2 - 489 Probable lipoprotein nlpC precursor - none -
fig|6666666.229915.peg.248 CDS JPZI01000003.1 90732 90436 -3 - 297 Integration host factor alpha subunit DNA structural proteins, bacterial
fig|6666666.229915.peg.249 CDS JPZI01000003.1 93126 90736 -3 - 2391 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) tRNA aminoacylation, Phe
fig|6666666.229915.peg.250 CDS JPZI01000003.1 94135 93146 -1 - 990 Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20) tRNA aminoacylation, Phe
fig|6666666.229915.peg.251 CDS JPZI01000003.1 95350 94475 -1 - 876 Probable protease htpX homolog - none -
fig|6666666.229915.peg.252 CDS JPZI01000003.1 95642 95460 -2 - 183 hypothetical protein - none -
fig|6666666.229915.peg.253 CDS JPZI01000003.1 96231 97232 3 + 1002 Arabinose 5-phosphate isomerase (EC 5.3.1.13) KDO2-Lipid A biosynthesis
fig|6666666.229915.peg.254 CDS JPZI01000003.1 97232 97786 2 + 555 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC 3.1.3.45) KDO2-Lipid A biosynthesis
fig|6666666.229915.peg.255 CDS JPZI01000003.1 97952 99499 2 + 1548 Anthranilate synthase, aminase component (EC 4.1.3.27) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229915.peg.256 CDS JPZI01000003.1 99510 100100 3 + 591 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229915.peg.257 CDS JPZI01000003.1 100217 100609 2 + 393 putative - none -
fig|6666666.229915.peg.258 CDS JPZI01000003.1 100621 101622 1 + 1002 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) Auxin biosynthesis;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229915.peg.259 CDS JPZI01000003.1 101718 101996 3 + 279 HigB toxin protein Toxin-antitoxin replicon stabilization systems
fig|6666666.229915.peg.260 CDS JPZI01000003.1 102012 102284 3 + 273 HigA protein (antitoxin to HigB) Toxin-antitoxin replicon stabilization systems
fig|6666666.229915.peg.261 CDS JPZI01000003.1 102293 103723 2 + 1431 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24) Auxin biosynthesis;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis;
Tryptophan synthesis
fig|6666666.229915.peg.262 CDS JPZI01000003.1 104012 105160 2 + 1149 Uptake hydrogenase small subunit precursor (EC 1.12.99.6) Hydrogenases
fig|6666666.229915.peg.263 CDS JPZI01000003.1 105162 106202 3 + 1041 Fe-S-cluster-containing hydrogenase components 1 Anaerobic respiratory reductases;
Hydrogenases
fig|6666666.229915.peg.264 CDS JPZI01000003.1 106195 107421 1 + 1227 Ni/Fe-hydrogenase 2 B-type cytochrome subunit Hydrogenases
fig|6666666.229915.peg.265 CDS JPZI01000003.1 107421 109130 3 + 1710 Uptake hydrogenase large subunit (EC 1.12.99.6) Hydrogenases
fig|6666666.229915.peg.266 CDS JPZI01000003.1 109130 109609 2 + 480 Hydrogenase maturation protease (EC 3.4.24.-) - none -
fig|6666666.229915.peg.267 CDS JPZI01000003.1 109678 110187 1 + 510 Hydrogenase-2 operon protein hybE - none -
fig|6666666.229915.peg.268 CDS JPZI01000003.1 110217 110492 3 + 276 [NiFe] hydrogenase metallocenter assembly protein HybG G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229915.peg.269 CDS JPZI01000003.1 110823 110635 -3 - 189 hypothetical protein - none -
fig|6666666.229915.peg.270 CDS JPZI01000003.1 111031 111153 1 + 123 hypothetical protein - none -
fig|6666666.229915.peg.271 CDS JPZI01000003.1 111187 111453 1 + 267 Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3) Na+ translocating decarboxylases and related biotin-dependent enzymes;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229915.peg.272 CDS JPZI01000003.1 111469 113265 1 + 1797 Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3) Na+ translocating decarboxylases and related biotin-dependent enzymes;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229915.peg.273 CDS JPZI01000003.1 113276 114580 2 + 1305 Oxaloacetate decarboxylase beta chain (EC 4.1.1.3) Na+ translocating decarboxylases and related biotin-dependent enzymes;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229915.peg.274 CDS JPZI01000003.1 117681 114976 -3 - 2706 Outer membrane receptor for lactoferrin or transferrin, TonB-dependent protein A - none -
fig|6666666.229915.peg.275 CDS JPZI01000003.1 118088 118855 2 + 768 3-hydroxypropionate dehydrogenase (EC 1.1.1.298) - none -
fig|6666666.229915.peg.276 CDS JPZI01000003.1 118865 120064 2 + 1200 Tryptophan synthase beta chain (EC 4.2.1.20) Auxin biosynthesis;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229915.peg.277 CDS JPZI01000003.1 120061 120867 1 + 807 Tryptophan synthase alpha chain (EC 4.2.1.20) Auxin biosynthesis;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229915.peg.278 CDS JPZI01000003.1 121144 122829 1 + 1686 Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) Ribonucleotide reduction
fig|6666666.229915.peg.279 CDS JPZI01000003.1 123089 124078 2 + 990 Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) Ribonucleotide reduction
fig|6666666.229915.peg.280 CDS JPZI01000003.1 124363 125769 1 + 1407 Pyruvate kinase (EC 2.7.1.40) Entner-Doudoroff Pathway;
Glycerate metabolism;
Glycolysis and Gluconeogenesis;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229915.peg.281 CDS JPZI01000003.1 126176 125874 -2 - 303 Autoinducer 2 (AI-2) modifying protein LsrG Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229915.peg.282 CDS JPZI01000003.1 127087 126209 -1 - 879 Autoinducer 2 (AI-2) aldolase LsrF (EC 4.2.1.-) Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229915.peg.283 CDS JPZI01000003.1 128127 127111 -3 - 1017 Autoinducer 2 (AI-2) ABC transport system, periplasmic AI-2 binding protein LsrB Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229915.peg.284 CDS JPZI01000003.1 129156 128152 -3 - 1005 Autoinducer 2 (AI-2) ABC transport system, membrane channel protein LsrD Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229915.peg.285 CDS JPZI01000003.1 130045 129170 -1 - 876 Autoinducer 2 (AI-2) ABC transport system, membrane channel protein LsrC Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229915.peg.286 CDS JPZI01000003.1 130189 130055 -1 - 135 Autoinducer 2 (AI-2) ABC transport system, membrane channel protein LsrC Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229915.peg.287 CDS JPZI01000003.1 131716 130199 -1 - 1518 Autoinducer 2 (AI-2) ABC transport system, fused AI2 transporter subunits and ATP-binding component Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229915.peg.288 CDS JPZI01000003.1 131962 132927 1 + 966 LsrR, transcriptional repressor of lsr operon Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229915.peg.289 CDS JPZI01000003.1 132976 134550 1 + 1575 Autoinducer 2 (AI-2) kinase LsrK (EC 2.7.1.-) Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229915.peg.290 CDS JPZI01000003.1 135364 134636 -1 - 729 Dethiobiotin synthetase (EC 6.3.3.3) Biotin biosynthesis Experimental
fig|6666666.229915.peg.291 CDS JPZI01000003.1 136670 135441 -2 - 1230 Mlc, transcriptional repressor of MalT (the transcriptional activator of maltose regulon) and manXYZ operon Maltose and Maltodextrin Utilization
fig|6666666.229915.peg.292 CDS JPZI01000003.1 136866 138269 3 + 1404 Asparaginyl-tRNA synthetase (EC 6.1.1.22) tRNA aminoacylation, Asp and Asn
fig|6666666.229915.peg.293 CDS JPZI01000003.1 138432 138298 -3 - 135 hypothetical protein - none -
fig|6666666.229915.peg.294 CDS JPZI01000003.1 138894 138433 -3 - 462 Stringent starvation protein B Carbon Starvation
fig|6666666.229915.peg.295 CDS JPZI01000003.1 139547 138906 -2 - 642 Stringent starvation protein A Carbon Starvation
fig|6666666.229915.peg.296 CDS JPZI01000003.1 140202 139747 -3 - 456 Molybdenum cofactor biosynthesis protein MoaE Molybdenum cofactor biosynthesis;
ar-104-EC Molybdenum cofactor biosynthesis moaABCDE
fig|6666666.229915.peg.297 CDS JPZI01000003.1 140448 140203 -3 - 246 Molybdenum cofactor biosynthesis protein MoaD Molybdenum cofactor biosynthesis;
ar-104-EC Molybdenum cofactor biosynthesis moaABCDE
fig|6666666.229915.peg.298 CDS JPZI01000003.1 140888 140448 -2 - 441 Molybdenum cofactor biosynthesis protein MoaC Molybdenum cofactor biosynthesis;
ar-104-EC Molybdenum cofactor biosynthesis moaABCDE
fig|6666666.229915.peg.299 CDS JPZI01000003.1 141996 140983 -3 - 1014 Molybdenum cofactor biosynthesis protein MoaA Molybdenum cofactor biosynthesis;
ar-104-EC Molybdenum cofactor biosynthesis moaABCDE
fig|6666666.229915.peg.300 CDS JPZI01000003.1 142356 143324 3 + 969 FIG002813: LPPG:FO 2-phospho-L-lactate transferase like, CofD-like - none -
fig|6666666.229915.peg.301 CDS JPZI01000003.1 144381 143389 -3 - 993 Putative DNA-binding protein in cluster with Type I restriction-modification system Restriction-Modification System
fig|6666666.229915.peg.302 CDS JPZI01000003.1 144456 144578 3 + 123 hypothetical protein - none -
fig|6666666.229915.peg.303 CDS JPZI01000003.1 146131 144674 -1 - 1458 Thiamine biosynthesis protein thiI - none -
fig|6666666.229915.peg.304 CDS JPZI01000003.1 146437 147537 1 + 1101 Cytochrome c-type protein TorY - none -
fig|6666666.229915.peg.305 CDS JPZI01000003.1 147598 150078 1 + 2481 Trimethylamine-N-oxide reductase (EC 1.6.6.9) - none -
fig|6666666.229915.peg.306 CDS JPZI01000003.1 150926 150147 -2 - 780 Protein of unknown function DUF419 - none -
fig|6666666.229915.peg.307 CDS JPZI01000003.1 150928 151098 1 + 171 hypothetical protein - none -
fig|6666666.229915.peg.308 CDS JPZI01000003.1 151152 152609 3 + 1458 2-oxoglutarate/malate translocator - none -
fig|6666666.229915.peg.309 CDS JPZI01000003.1 152828 153082 2 + 255 RelB/StbD replicon stabilization protein (antitoxin to RelE/StbE) Toxin-antitoxin replicon stabilization systems
fig|6666666.229915.peg.310 CDS JPZI01000003.1 153079 153363 1 + 285 StbE replicon stabilization toxin - none -
fig|6666666.229915.peg.311 CDS JPZI01000003.1 154172 153387 -2 - 786 tRNA pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229915.peg.312 CDS JPZI01000003.1 154727 154335 -2 - 393 SSU ribosomal protein S9p (S16e) Ribosome SSU bacterial
fig|6666666.229915.peg.313 CDS JPZI01000003.1 155172 154744 -3 - 429 LSU ribosomal protein L13p (L13Ae) Ribosome LSU bacterial
fig|6666666.229915.peg.314 CDS JPZI01000003.1 156009 155413 -3 - 597 hypothetical protein - none -
fig|6666666.229915.peg.315 CDS JPZI01000003.1 158001 156022 -3 - 1980 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) DNA repair, bacterial RecBCD pathway
fig|6666666.229915.peg.316 CDS JPZI01000003.1 161669 158001 -2 - 3669 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) DNA repair, bacterial RecBCD pathway
fig|6666666.229915.peg.317 CDS JPZI01000003.1 162095 161739 -2 - 357 DsrE-related protein - none -
fig|6666666.229915.peg.318 CDS JPZI01000003.1 163059 162529 -3 - 531 3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabA form (EC 4.2.1.59) Fatty Acid Biosynthesis FASII
fig|6666666.229915.peg.319 CDS JPZI01000003.1 165019 163202 -1 - 1818 ATP-dependent protease La (EC 3.4.21.53) Type II Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229915.peg.320 CDS JPZI01000003.1 164958 165080 3 + 123 hypothetical protein - none -
fig|6666666.229915.peg.321 CDS JPZI01000003.1 165132 165578 3 + 447 Macrodomain Ter protein YcbG - none -
fig|6666666.229915.peg.322 CDS JPZI01000003.1 165853 165644 -1 - 210 Cold shock protein CspD Cold shock, CspA family of proteins
fig|6666666.229915.peg.323 CDS JPZI01000003.1 166207 166043 -1 - 165 hypothetical protein - none -
fig|6666666.229915.peg.324 CDS JPZI01000003.1 166974 166261 -3 - 714 tRNA pseudouridine synthase C (EC 4.2.1.70) RNA pseudouridine syntheses;
tRNA modification Bacteria
fig|6666666.229915.peg.325 CDS JPZI01000003.1 167285 166971 -2 - 315 Hypothetical protein YqcC (clustered with tRNA pseudouridine synthase C) - none -
fig|6666666.229915.peg.326 CDS JPZI01000003.1 167394 168176 3 + 783 Zn-ribbon-containing, possibly nucleic-acid-binding protein - none -
fig|6666666.229915.peg.327 CDS JPZI01000003.1 168185 169024 2 + 840 NADPH dependent preQ0 reductase (EC 1.7.1.13) - none -
fig|6666666.229915.peg.328 CDS JPZI01000003.1 170326 169076 -1 - 1251 Phosphoglycerate transport system transcriptional regulatory protein PgtA Phosphoglycerate transport system
fig|6666666.229915.peg.329 CDS JPZI01000003.1 172301 170319 -2 - 1983 Phosphoglycerate transport system sensor protein PgtB (EC 2.7.3.-) Phosphoglycerate transport system
fig|6666666.229915.peg.330 CDS JPZI01000003.1 173548 172298 -1 - 1251 Phosphoglycerate transport regulatory protein PgtC Phosphoglycerate transport system
fig|6666666.229915.peg.331 CDS JPZI01000003.1 173922 174920 3 + 999 ABC-type Fe3+ transport system, periplasmic component - none -
fig|6666666.229915.peg.332 CDS JPZI01000003.1 174942 176021 3 + 1080 Thiamin ABC transporter, ATPase component Thiamin biosynthesis
fig|6666666.229915.peg.333 CDS JPZI01000003.1 176024 177718 2 + 1695 Ferric iron ABC transporter, permease protein Iron acquisition in Streptococcus
fig|6666666.229915.peg.334 CDS JPZI01000003.1 177740 178798 2 + 1059 Ferric iron ABC transporter, ATP-binding protein Iron acquisition in Streptococcus
fig|6666666.229915.peg.335 CDS JPZI01000003.1 179461 178925 -1 - 537 Putative transporting ATPase - none -
fig|6666666.229915.peg.336 CDS JPZI01000003.1 181504 179561 -1 - 1944 Cell division protein FtsH (EC 3.4.24.-) Bacterial Cell Division;
Cell division-ribosomal stress proteins cluster;
Folate biosynthesis cluster
fig|6666666.229915.peg.337 CDS JPZI01000003.1 182249 181620 -2 - 630 Heat shock protein FtsJ/RrmJ @ Ribosomal RNA large subunit methyltransferase E (EC 2.1.1.-) RNA methylation
fig|6666666.229915.peg.338 CDS JPZI01000003.1 183253 182384 -1 - 870 Formyltetrahydrofolate deformylase (EC 3.5.1.10) 5-FCL-like protein;
One-carbon metabolism by tetrahydropterines
fig|6666666.229915.peg.339 CDS JPZI01000003.1 183686 183288 -2 - 399 DNA-binding protein H-NS - none -
fig|6666666.229915.peg.340 CDS JPZI01000003.1 184127 185659 2 + 1533 Na+/H+ antiporter - none -
fig|6666666.229915.peg.341 CDS JPZI01000003.1 186081 185800 -3 - 282 Mobile element protein - none -
fig|6666666.229915.peg.342 CDS JPZI01000003.1 186807 186454 -3 - 354 LSU ribosomal protein L20p Ribosome LSU bacterial
fig|6666666.229915.peg.343 CDS JPZI01000003.1 187139 187282 2 + 144 hypothetical protein - none -
fig|6666666.229915.peg.344 CDS JPZI01000003.1 187762 187283 -1 - 480 Translation initiation factor 3 Translation initiation factors bacterial
fig|6666666.229915.peg.345 CDS JPZI01000003.1 188138 188917 2 + 780 Ferredoxin--NADP(+) reductase (EC 1.18.1.2) Biogenesis of cytochrome c oxidases
fig|6666666.229915.peg.346 CDS JPZI01000003.1 188935 189051 1 + 117 hypothetical protein - none -
fig|6666666.229915.peg.347 CDS JPZI01000003.1 190990 189059 -1 - 1932 Threonyl-tRNA synthetase (EC 6.1.1.3) tRNA aminoacylation, Thr
fig|6666666.229915.peg.348 CDS JPZI01000003.1 191231 192106 2 + 876 Ribulosamine/erythrulosamine 3-kinase potentially involved in protein deglycation Protein deglycation
fig|6666666.229915.peg.349 CDS JPZI01000003.1 192997 192173 -1 - 825 Outer membrane protein A precursor Osmoregulation
fig|6666666.229915.peg.350 CDS JPZI01000003.1 194246 193188 -2 - 1059 Possible protease sohB (EC 3.4.21.-) - none -
fig|6666666.229915.peg.351 CDS JPZI01000003.1 194438 195028 2 + 591 FMN-dependent NADH-azoreductase - none -
fig|6666666.229915.peg.352 CDS JPZI01000003.1 196459 195122 -1 - 1338 NADH dehydrogenase (EC 1.6.99.3) Respiratory dehydrogenases 1;
Riboflavin synthesis cluster
fig|6666666.229915.peg.353 CDS JPZI01000003.1 198234 196645 -3 - 1590 Glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Respiratory dehydrogenases 1
fig|6666666.229915.peg.354 CDS JPZI01000003.1 199350 198502 -3 - 849 rRNA small subunit methyltransferase I 16S rRNA modification within P site of ribosome;
CBSS-160492.1.peg.550;
Heat shock dnaK gene cluster extended
fig|6666666.229915.peg.355 CDS JPZI01000003.1 199427 201145 2 + 1719 LppC putative lipoprotein CBSS-160492.1.peg.550
fig|6666666.229915.peg.356 CDS JPZI01000003.1 201155 201361 2 + 207 Predicted endonuclease distantly related to archaeal Holliday junction resolvase CBSS-160492.1.peg.550
fig|6666666.229915.peg.357 CDS JPZI01000003.1 201349 201513 1 + 165 Predicted endonuclease distantly related to archaeal Holliday junction resolvase CBSS-160492.1.peg.550
fig|6666666.229915.peg.358 CDS JPZI01000003.1 201526 202110 1 + 585 Phosphoheptose isomerase (EC 5.3.1.-) CBSS-160492.1.peg.550;
LOS core oligosaccharide biosynthesis
fig|6666666.229915.peg.359 CDS JPZI01000003.1 202175 202762 2 + 588 21 kDa hemolysin precursor CBSS-160492.1.peg.550
fig|6666666.229915.peg.360 CDS JPZI01000003.1 203797 203105 -1 - 693 Carbonic anhydrase (EC 4.2.1.1) - none -
fig|6666666.229915.peg.361 CDS JPZI01000003.1 204014 205084 2 + 1071 Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11) / Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) Cluster Ytf and putative sugar transporter;
Peptide methionine sulfoxide reductase;
Peptide methionine sulfoxide reductase;
Putative sugar ABC transporter (ytf cluster)
fig|6666666.229915.peg.362 CDS JPZI01000003.1 205088 205729 2 + 642 Cytochrome c-type biogenesis protein CcdA homolog, associated with MetSO reductase Peptide methionine sulfoxide reductase
fig|6666666.229915.peg.363 CDS JPZI01000003.1 205745 206227 2 + 483 Thiol:disulfide oxidoreductase associated with MetSO reductase Peptide methionine sulfoxide reductase
fig|6666666.229915.peg.364 CDS JPZI01000003.1 207454 207573 1 + 120 FIG00697497: hypothetical protein - none -
fig|6666666.229915.peg.365 CDS JPZI01000003.1 207874 207623 -1 - 252 FIG00699498: hypothetical protein - none -
fig|6666666.229915.peg.366 CDS JPZI01000003.1 208240 208392 1 + 153 hypothetical protein - none -
fig|6666666.229915.peg.367 CDS JPZI01000003.1 209067 210053 3 + 987 Fructose repressor FruR, LacI family Fructose utilization
fig|6666666.229915.peg.368 CDS JPZI01000003.1 210756 210037 -3 - 720 SanA protein - none -
fig|6666666.229915.peg.369 CDS JPZI01000003.1 210943 212046 1 + 1104 Homoserine O-acetyltransferase (EC 2.3.1.31) Methionine Biosynthesis
fig|6666666.229915.peg.370 CDS JPZI01000003.1 212350 213348 1 + 999 Purine nucleotide synthesis repressor Purine nucleotide synthesis regulator
fig|6666666.229915.peg.371 CDS JPZI01000003.1 213491 213631 2 + 141 hypothetical protein - none -
fig|6666666.229915.peg.372 CDS JPZI01000003.1 213633 213953 3 + 321 putative cytoplasmic protein - none -
fig|6666666.229915.peg.373 CDS JPZI01000003.1 214894 214067 -1 - 828 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229915.peg.374 CDS JPZI01000003.1 215949 214978 -3 - 972 Cys regulon transcriptional activator CysB Cysteine Biosynthesis;
LysR-family proteins in Escherichia coli
fig|6666666.229915.peg.375 CDS JPZI01000003.1 216948 215980 -3 - 969 Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70) RNA pseudouridine syntheses
fig|6666666.229915.peg.376 CDS JPZI01000003.1 217626 217003 -3 - 624 Hypothetical YciO protein, TsaC/YrdC paralog YrdC-YciO-Sua5 protein family
fig|6666666.229915.peg.377 CDS JPZI01000003.1 218083 217703 -1 - 381 Chorismate mutase I (EC 5.4.99.5) / Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) Chorismate Synthesis;
Chorismate Synthesis;
Phenylalanine and Tyrosine Branches from Chorismate;
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229915.peg.378 CDS JPZI01000003.1 218827 218111 -1 - 717 Chorismate mutase I (EC 5.4.99.5) / Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) Chorismate Synthesis;
Chorismate Synthesis;
Phenylalanine and Tyrosine Branches from Chorismate;
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229915.peg.379 CDS JPZI01000003.1 220753 218870 -1 - 1884 Signal peptide peptidase SppA (EC 3.4.21.-) - none -
fig|6666666.229915.peg.380 CDS JPZI01000003.1 220877 221431 2 + 555 FIG002003: Protein YdjA - none -
fig|6666666.229915.peg.381 CDS JPZI01000003.1 223265 221784 -2 - 1482 Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4) 5-FCL-like protein;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate;
TCA Cycle;
TCA Cycle
fig|6666666.229915.peg.382 CDS JPZI01000003.1 224909 223302 -2 - 1608 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) 5-FCL-like protein;
Dehydrogenase complexes;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229915.peg.383 CDS JPZI01000003.1 227655 224998 -3 - 2658 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) 5-FCL-like protein;
Dehydrogenase complexes;
Methionine Degradation;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229915.peg.384 CDS JPZI01000003.1 228015 227899 -3 - 117 hypothetical protein - none -
fig|6666666.229915.peg.385 CDS JPZI01000003.1 228004 228363 1 + 360 Mobile element protein - none -
fig|6666666.229915.peg.386 CDS JPZI01000003.1 228384 229181 3 + 798 Mobile element protein - none -
fig|6666666.229915.peg.387 CDS JPZI01000003.1 230630 229254 -2 - 1377 Sensory histidine kinase QseC Orphan regulatory proteins
fig|6666666.229915.peg.388 CDS JPZI01000003.1 231288 230608 -3 - 681 Two-component system response regulator QseB Orphan regulatory proteins
fig|6666666.229915.peg.389 CDS JPZI01000003.1 231904 231488 -1 - 417 Protein ygiW precursor - none -
fig|6666666.229915.peg.390 CDS JPZI01000003.1 232276 233193 1 + 918 formate dehydrogenase formation protein FdhE Formate hydrogenase
fig|6666666.229915.peg.391 CDS JPZI01000003.1 235238 233310 -2 - 1929 2@1,3@1-cyclic-nucleotide 2@1-phosphodiesterase (EC 3.1.4.16) Purine conversions;
pyrimidine conversions
fig|6666666.229915.peg.392 CDS JPZI01000003.1 235464 236363 3 + 900 Iron compound ABC uptake transporter substrate-binding protein PiuA - none -
fig|6666666.229915.peg.393 CDS JPZI01000003.1 236423 237388 2 + 966 Ferric anguibactin transport system permease protein fatD - none -
fig|6666666.229915.peg.394 CDS JPZI01000003.1 237396 238319 3 + 924 Ferric vibriobactin, enterobactin transport system, permease protein VctG (TC 3.A.1.14.6) - none -
fig|6666666.229915.peg.395 CDS JPZI01000003.1 238331 239089 2 + 759 Iron(III) dicitrate transport ATP-binding protein FecE (TC 3.A.1.14.1) - none -
fig|6666666.229915.peg.396 CDS JPZI01000003.1 240759 239227 -3 - 1533 Cell wall endopeptidase, family M23/M37 Glutaredoxins
fig|6666666.229915.peg.397 CDS JPZI01000003.1 240947 241720 2 + 774 Zinc ABC transporter, ATP-binding protein ZnuC - none -
fig|6666666.229915.peg.398 CDS JPZI01000003.1 241733 242518 2 + 786 Zinc ABC transporter, inner membrane permease protein ZnuB - none -
fig|6666666.229915.peg.399 CDS JPZI01000003.1 244272 242899 -3 - 1374 sodium-dependent transporter - none -
fig|6666666.229915.peg.400 CDS JPZI01000003.1 244932 244297 -3 - 636 Endonuclease III (EC 4.2.99.18) DNA Repair Base Excision
fig|6666666.229915.peg.401 CDS JPZI01000003.1 245867 245079 -2 - 789 Electron transport complex protein RnfE Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229915.peg.402 CDS JPZI01000003.1 246475 245864 -1 - 612 Electron transport complex protein RnfG Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229915.peg.403 CDS JPZI01000003.1 247564 246485 -1 - 1080 Electron transport complex protein RnfD Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229915.peg.404 CDS JPZI01000003.1 247826 247575 -2 - 252 Electron transport complex protein RnfC Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229915.peg.405 CDS JPZI01000003.1 250322 249732 -2 - 591 Electron transport complex protein RnfB Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229915.peg.406 CDS JPZI01000003.1 250903 250322 -1 - 582 Electron transport complex protein RnfA Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229915.peg.407 CDS JPZI01000003.1 251981 251094 -2 - 888 Cell division inhibitor CBSS-83333.1.peg.946;
Persister Cells
fig|6666666.229915.peg.408 CDS JPZI01000003.1 252472 252005 -1 - 468 Arginine pathway regulatory protein ArgR, repressor of arg regulon Arginine Deiminase Pathway;
Arginine and Ornithine Degradation
fig|6666666.229915.peg.409 CDS JPZI01000003.1 252729 253664 3 + 936 Malate dehydrogenase (EC 1.1.1.37) TCA Cycle
fig|6666666.229915.peg.410 CDS JPZI01000003.1 254560 253820 -1 - 741 FIG00698611: hypothetical protein - none -
fig|6666666.229915.peg.411 CDS JPZI01000003.1 255947 254928 -2 - 1020 Branched-chain amino acid aminotransferase (EC 2.6.1.42) Alanine biosynthesis;
Pyruvate Alanine Serine Interconversions
fig|6666666.229915.peg.412 CDS JPZI01000003.1 256407 257312 3 + 906 Glycine cleavage system transcriptional activator GcvA LysR-family proteins in Escherichia coli;
Orphan regulatory proteins
fig|6666666.229915.peg.413 CDS JPZI01000003.1 257332 258393 1 + 1062 LSU rRNA 2@1-O-methyl-C2498 methyltransferase RlmM RNA methylation
fig|6666666.229915.peg.414 CDS JPZI01000003.1 258510 258962 3 + 453 Ribonucleotide reductase transcriptional regulator NrdR Ribonucleotide reduction
fig|6666666.229915.peg.415 CDS JPZI01000003.1 258962 260086 2 + 1125 Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster;
Riboflavin synthesis cluster
fig|6666666.229915.peg.416 CDS JPZI01000003.1 260095 261123 1 + 1029 Outer membrane stress sensor protease DegS Periplasmic Stress Response;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229915.peg.417 CDS JPZI01000003.1 261132 261728 3 + 597 Nucleotidase YfbR, HD superfamily Housecleaning nucleoside triphosphate pyrophosphatases
fig|6666666.229915.peg.418 CDS JPZI01000003.1 263138 261795 -2 - 1344 Arsenic efflux pump protein Arsenic resistance
fig|6666666.229915.peg.419 CDS JPZI01000003.1 263235 263122 -3 - 114 hypothetical protein - none -
fig|6666666.229915.peg.420 CDS JPZI01000003.1 264136 263357 -1 - 780 DNA-binding domain of ModE / Molybdate-binding domain of ModE Molybdenum cofactor biosynthesis;
Molybdenum cofactor biosynthesis
fig|6666666.229915.peg.421 CDS JPZI01000003.1 264364 265128 1 + 765 Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229915.peg.422 CDS JPZI01000003.1 265207 265935 1 + 729 Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229915.peg.423 CDS JPZI01000003.1 265922 266983 2 + 1062 Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229915.peg.424 CDS JPZI01000003.1 268616 267126 -2 - 1491 Cytosol aminopeptidase PepA (EC 3.4.11.1) Aminopeptidases (EC 3.4.11.-);
CBSS-208964.1.peg.3826;
Dehydrogenase complexes
fig|6666666.229915.peg.425 CDS JPZI01000003.1 268753 269871 1 + 1119 FIG000988: Predicted permease CBSS-208964.1.peg.3826
fig|6666666.229915.peg.426 CDS JPZI01000003.1 269876 270943 2 + 1068 FIG000906: Predicted Permease CBSS-208964.1.peg.3826
fig|6666666.229915.peg.427 CDS JPZI01000003.1 271118 272002 2 + 885 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) 5-FCL-like protein;
Methionine Biosynthesis;
One-carbon metabolism by tetrahydropterines
fig|6666666.229915.peg.428 CDS JPZI01000003.1 272152 272967 1 + 816 Shikimate 5-dehydrogenase I gamma (EC 1.1.1.25) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229915.peg.429 CDS JPZI01000003.1 274305 273292 -3 - 1014 [NiFe] hydrogenase metallocenter assembly protein HypE G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229915.peg.430 CDS JPZI01000003.1 275417 274305 -2 - 1113 [NiFe] hydrogenase metallocenter assembly protein HypD G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229915.peg.431 CDS JPZI01000003.1 276256 275444 -1 - 813 [NiFe] hydrogenase nickel incorporation-associated protein HypB G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229915.peg.432 CDS JPZI01000003.1 276958 276335 -1 - 624 ATPase component NikO of energizing module of nickel ECF transporter ECF class transporters;
Transport of Nickel and Cobalt
fig|6666666.229915.peg.433 CDS JPZI01000003.1 277620 276955 -3 - 666 Transmembrane component NikQ of energizing module of nickel ECF transporter ECF class transporters;
Transport of Nickel and Cobalt
fig|6666666.229915.peg.434 CDS JPZI01000003.1 278267 277617 -2 - 651 Substrate-specific component NikM of nickel ECF transporter ECF class transporters;
Transport of Nickel and Cobalt
fig|6666666.229915.peg.435 CDS JPZI01000003.1 278770 278267 -1 - 504 Additional component NikL of nickel ECF transporter Transport of Nickel and Cobalt
fig|6666666.229915.peg.436 CDS JPZI01000003.1 279481 278777 -1 - 705 Additional periplasmic component NikK of nickel ECF transporter Transport of Nickel and Cobalt
fig|6666666.229915.peg.437 CDS JPZI01000003.1 280357 279665 -1 - 693 5@1-methylthioadenosine nucleosidase (EC 3.2.2.16) @ S-adenosylhomocysteine nucleosidase (EC 3.2.2.9) Adenosyl nucleosidases;
Adenosyl nucleosidases;
Methionine Biosynthesis;
Methionine Degradation;
Polyamine Metabolism
fig|6666666.229915.peg.438 CDS JPZI01000003.1 281021 280374 -2 - 648 Thiol-disulfide isomerase and thioredoxins - none -
fig|6666666.229915.peg.439 CDS JPZI01000003.1 282775 281054 -1 - 1722 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) DNA Repair Base Excision;
DNA repair, bacterial RecFOR pathway
fig|6666666.229915.peg.440 CDS JPZI01000003.1 283471 282788 -1 - 684 Thiol:disulfide interchange protein DsbC Periplasmic disulfide interchange
fig|6666666.229915.peg.441 CDS JPZI01000003.1 283835 284737 2 + 903 Peptide chain release factor 2; programmed frameshift-containing Programmed frameshift;
Programmed frameshift;
Translation termination factors bacterial
fig|6666666.229915.peg.442 CDS JPZI01000003.1 284794 286302 1 + 1509 Lysyl-tRNA synthetase (class II) (EC 6.1.1.6) tRNA aminoacylation, Lys
fig|6666666.229915.peg.443 CDS JPZI01000003.1 286493 286918 2 + 426 6-carboxytetrahydropterin synthase (EC 4.1.2.50) @ Queuosine biosynthesis QueD, PTPS-I Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229915.peg.444 CDS JPZI01000003.1 286924 287553 1 + 630 Queuosine Biosynthesis QueE Radical SAM Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229915.peg.445 CDS JPZI01000003.1 287778 288533 3 + 756 FIG137478: Hypothetical protein YbgI - none -
fig|6666666.229915.peg.446 CDS JPZI01000003.1 288624 289412 3 + 789 Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9) Fatty Acid Biosynthesis FASII
fig|6666666.229915.peg.447 CDS JPZI01000003.1 289485 291464 3 + 1980 Exoribonuclease II (EC 3.1.13.1) RNA processing and degradation, bacterial
fig|6666666.229915.peg.448 CDS JPZI01000003.1 292063 291581 -1 - 483 Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1) Oxidative stress;
Oxidative stress;
Oxidative stress
fig|6666666.229915.peg.449 CDS JPZI01000003.1 292249 293409 1 + 1161 Membrane fusion component of tripartite multidrug resistance system Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria
fig|6666666.229915.peg.450 CDS JPZI01000003.1 293419 294936 1 + 1518 Inner membrane component of tripartite multidrug resistance system Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria
fig|6666666.229915.peg.451 CDS JPZI01000003.1 295074 294961 -3 - 114 hypothetical protein - none -
fig|6666666.229915.peg.452 CDS JPZI01000003.1 295134 295253 3 + 120 HipA protein Persister Cells
fig|6666666.229915.peg.453 CDS JPZI01000003.1 295311 295799 3 + 489 HipA protein Persister Cells
fig|6666666.229915.peg.454 CDS JPZI01000003.1 295763 295876 2 + 114 hypothetical protein - none -
fig|6666666.229915.peg.455 CDS JPZI01000003.1 295982 296173 2 + 192 HipA protein Persister Cells
fig|6666666.229915.peg.456 CDS JPZI01000003.1 297244 296168 -1 - 1077 Type II restriction enzyme HpaII (EC 3.1.21.4) - none -
fig|6666666.229915.peg.457 CDS JPZI01000003.1 298320 297241 -3 - 1080 DNA-cytosine methyltransferase (EC 2.1.1.37) DNA repair, bacterial
fig|6666666.229915.peg.458 CDS JPZI01000003.1 301642 298778 -1 - 2865 Valyl-tRNA synthetase (EC 6.1.1.9) CBSS-208964.1.peg.3826;
tRNA aminoacylation, Val
fig|6666666.229915.peg.459 CDS JPZI01000003.1 302263 302123 -1 - 141 RNA-binding domain protein - none -
fig|6666666.229915.peg.460 CDS JPZI01000003.1 302294 302464 2 + 171 hypothetical protein - none -
fig|6666666.229915.peg.461 CDS JPZI01000003.1 302728 302558 -1 - 171 hypothetical protein - none -
fig|6666666.229915.peg.462 CDS JPZI01000003.1 303262 302810 -1 - 453 DNA polymerase III chi subunit (EC 2.7.7.7) CBSS-208964.1.peg.3826
fig|6666666.229915.peg.463 CDS JPZI01000003.1 303472 304866 1 + 1395 Fumarate hydratase class II (EC 4.2.1.2) TCA Cycle
fig|6666666.229915.peg.464 CDS JPZI01000003.1 304970 305575 2 + 606 FIG026291: Hypothetical periplasmic protein - none -
fig|6666666.229915.peg.465 CDS JPZI01000003.1 306734 305847 -2 - 888 Ribosomal protein S6 glutaminyl transferase Ribosome biogenesis bacterial
fig|6666666.229915.peg.466 CDS JPZI01000003.1 307487 306753 -2 - 735 Oxygen-insensitive NADPH nitroreductase (EC 1.-.-.-) - none -
fig|6666666.229915.peg.467 CDS JPZI01000003.1 307615 307878 1 + 264 Glutaredoxin 1 Glutaredoxins;
Glutathione: Redox cycle
fig|6666666.229915.peg.468 CDS JPZI01000003.1 308459 307971 -2 - 489 Beta-galactosidase (EC 3.2.1.23) Galactosylceramide and Sulfatide metabolism;
Lactose and Galactose Uptake and Utilization;
Lactose utilization
fig|6666666.229915.peg.469 CDS JPZI01000003.1 308626 309840 1 + 1215 Tyrosine-specific transport protein - none -
fig|6666666.229915.peg.470 CDS JPZI01000003.1 310618 309923 -1 - 696 L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) L-ascorbate utilization (and related gene clusters)
fig|6666666.229915.peg.471 CDS JPZI01000003.1 311472 310612 -3 - 861 L-xylulose 5-phosphate 3-epimerase (EC 5.1.3.-) L-ascorbate utilization (and related gene clusters)
fig|6666666.229915.peg.472 CDS JPZI01000003.1 312260 311511 -2 - 750 Ascorbate utilization transcriptional regulator UlaR, HTH-type L-ascorbate utilization (and related gene clusters)
fig|6666666.229915.peg.473 CDS JPZI01000003.1 313443 312352 -3 - 1092 Probable L-ascorbate-6-phosphate lactonase UlaG (EC 3.1.1.-) (L-ascorbate utilization protein G) L-ascorbate utilization (and related gene clusters)
fig|6666666.229915.peg.474 CDS JPZI01000003.1 313788 315560 3 + 1773 Ascorbate-specific PTS system, EIIC component L-ascorbate utilization (and related gene clusters)
fig|6666666.229915.peg.475 CDS JPZI01000003.1 315615 316076 3 + 462 Ascorbate-specific PTS system, EIIA component (EC 2.7.1.-) L-ascorbate utilization (and related gene clusters)
fig|6666666.229915.peg.476 CDS JPZI01000003.1 316153 316827 1 + 675 3-keto-L-gulonate 6-phosphate decarboxylase L-ascorbate utilization (and related gene clusters)
fig|6666666.229915.peg.477 CDS JPZI01000003.1 319294 316937 -1 - 2358 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) DNA uptake cluster;
Peptidoglycan Biosynthesis;
Type IV pilus
fig|6666666.229915.peg.478 CDS JPZI01000003.1 319450 319325 -1 - 126 hypothetical protein - none -
fig|6666666.229915.peg.479 CDS JPZI01000003.1 320438 319428 -2 - 1011 Putative membrane protein YeiH - none -
fig|6666666.229915.peg.480 CDS JPZI01000003.1 326376 320605 -3 - 5772 FIG00904191: hypothetical protein - none -
fig|6666666.229915.peg.481 CDS JPZI01000003.1 327875 326427 -2 - 1449 TldD protein, part of TldE/TldD proteolytic complex CBSS-354.1.peg.2917;
Putative TldE-TldD proteolytic complex
fig|6666666.229915.peg.482 CDS JPZI01000003.1 328082 328213 2 + 132 hypothetical protein - none -
fig|6666666.229915.peg.483 CDS JPZI01000003.1 329033 328188 -2 - 846 Molybdenum transport system protein ModD Molybdenum cofactor biosynthesis
fig|6666666.229915.peg.484 CDS JPZI01000003.1 329413 329030 -1 - 384 ABC transporter ATP-binding protein - none -
fig|6666666.229915.peg.485 CDS JPZI01000003.1 329647 329444 -1 - 204 ABC transporter ATP-binding protein - none -
fig|6666666.229915.peg.486 CDS JPZI01000003.1 330444 329647 -3 - 798 Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229915.peg.487 CDS JPZI01000003.1 331168 330419 -1 - 750 Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229915.peg.488 CDS JPZI01000003.1 331246 331449 1 + 204 hypothetical protein - none -
fig|6666666.229915.peg.489 CDS JPZI01000004.1 48 164 3 + 117 hypothetical protein - none -
fig|6666666.229915.peg.490 CDS JPZI01000004.1 827 711 -2 - 117 Mobile element protein - none -
fig|6666666.229915.peg.491 CDS JPZI01000004.1 1597 2268 1 + 672 Deoxyribose-phosphate aldolase (EC 4.1.2.4) Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.229915.peg.492 CDS JPZI01000004.1 2291 3040 2 + 750 Deoxyribose operon repressor, DeoR family Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.229915.peg.493 CDS JPZI01000004.1 3177 4268 3 + 1092 Putative exported protein precursor - none -
fig|6666666.229915.peg.494 CDS JPZI01000004.1 5805 4435 -3 - 1371 N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23) / Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157) Peptidoglycan Biosynthesis;
Peptidoglycan Biosynthesis;
Sialic Acid Metabolism;
Sialic Acid Metabolism;
Transcription repair cluster;
Transcription repair cluster;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229915.peg.495 CDS JPZI01000004.1 5891 7021 2 + 1131 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) Recycling of Peptidoglycan Amino Sugars
fig|6666666.229915.peg.496 CDS JPZI01000004.1 7018 7932 1 + 915 N-acetylmuramic acid 6-phosphate etherase - none -
fig|6666666.229915.peg.497 CDS JPZI01000004.1 7999 8295 1 + 297 Mitomycin resistance protein - none -
fig|6666666.229915.peg.498 CDS JPZI01000004.1 8547 8741 3 + 195 hypothetical protein - none -
fig|6666666.229915.peg.499 CDS JPZI01000004.1 8757 9074 3 + 318 hypothetical protein - none -
fig|6666666.229915.peg.500 CDS JPZI01000004.1 9138 9260 3 + 123 hypothetical protein - none -
fig|6666666.229915.peg.501 CDS JPZI01000004.1 9352 10671 1 + 1320 lipoprotein, putative - none -
fig|6666666.229915.peg.502 CDS JPZI01000004.1 10706 10828 2 + 123 hypothetical protein - none -
fig|6666666.229915.peg.503 CDS JPZI01000004.1 10797 12092 3 + 1296 Glycine/D-amino acid oxidases (deaminating) - none -
fig|6666666.229915.peg.504 CDS JPZI01000004.1 12218 12997 2 + 780 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain - none -
fig|6666666.229915.peg.505 CDS JPZI01000004.1 12981 13703 3 + 723 L-Cystine ABC transporter, permease protein TcyB - none -
fig|6666666.229915.peg.506 CDS JPZI01000004.1 13713 14480 3 + 768 ABC-type polar amino acid transport system, ATPase component CBSS-326442.4.peg.1852
fig|6666666.229915.peg.507 CDS JPZI01000004.1 14776 14489 -1 - 288 tRNA 5-methylaminomethyl-2-thiouridine synthase TusB Sulfite reduction-associated complex DsrMKJOP and co-clustering genes;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.229915.peg.508 CDS JPZI01000004.1 15141 14779 -3 - 363 tRNA 5-methylaminomethyl-2-thiouridine synthase TusC CBSS-326442.4.peg.1852;
Sulfite reduction-associated complex DsrMKJOP and co-clustering genes;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.229915.peg.509 CDS JPZI01000004.1 15515 15138 -2 - 378 tRNA 5-methylaminomethyl-2-thiouridine synthase TusD CBSS-326442.4.peg.1852;
Sulfite reduction-associated complex DsrMKJOP and co-clustering genes;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.229915.peg.510 CDS JPZI01000004.1 16187 15519 -2 - 669 YheO-like PAS domain - none -
fig|6666666.229915.peg.511 CDS JPZI01000004.1 16992 16267 -3 - 726 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase;
Potassium homeostasis
fig|6666666.229915.peg.512 CDS JPZI01000004.1 17081 17302 2 + 222 Protein SlyX - none -
fig|6666666.229915.peg.513 CDS JPZI01000004.1 18090 17362 -3 - 729 Peroxiredoxin family protein/glutaredoxin - none -
fig|6666666.229915.peg.514 CDS JPZI01000004.1 18249 19148 3 + 900 Hydrogen peroxide-inducible genes activator LysR-family proteins in Escherichia coli;
LysR-family proteins in Salmonella enterica Typhimurium;
Oxidative stress;
Thioredoxin-disulfide reductase
fig|6666666.229915.peg.515 CDS JPZI01000004.1 19160 19780 2 + 621 Unsaturated fatty acid biosythesis repressor FabR, TetR family - none -
fig|6666666.229915.peg.516 CDS JPZI01000004.1 21525 19891 -3 - 1635 ABC transporter ATP-binding protein - none -
fig|6666666.229915.peg.517 CDS JPZI01000004.1 23290 21542 -1 - 1749 Transport ATP-binding protein CydD Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229915.peg.518 CDS JPZI01000004.1 24783 23461 -3 - 1323 Anaerobic C4-dicarboxylate membrane transporter DcuA - none -
fig|6666666.229915.peg.519 CDS JPZI01000004.1 25110 25550 3 + 441 FIG136845: Rhodanese-related sulfurtransferase Glutaredoxin 3 containing cluster
fig|6666666.229915.peg.520 CDS JPZI01000004.1 25566 26078 3 + 513 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) Glutaredoxin 3 containing cluster
fig|6666666.229915.peg.521 CDS JPZI01000004.1 26166 27179 3 + 1014 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) Glutaredoxin 3 containing cluster;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229915.peg.522 CDS JPZI01000004.1 27182 27979 2 + 798 Serine acetyltransferase (EC 2.3.1.30) Cysteine Biosynthesis;
Methionine Biosynthesis
fig|6666666.229915.peg.523 CDS JPZI01000004.1 28158 28027 -3 - 132 hypothetical protein - none -
fig|6666666.229915.peg.524 CDS JPZI01000004.1 28179 28583 3 + 405 hypothetical protein - none -
fig|6666666.229915.peg.525 CDS JPZI01000004.1 29634 28621 -3 - 1014 Fructose-1,6-bisphosphatase, GlpX type (EC 3.1.3.11) Glycolysis and Gluconeogenesis
fig|6666666.229915.peg.526 CDS JPZI01000004.1 29830 30048 1 + 219 FIG074102: hypothetical protein - none -
fig|6666666.229915.peg.527 CDS JPZI01000004.1 30105 30548 3 + 444 Flavoprotein MioC Flavodoxin
fig|6666666.229915.peg.528 CDS JPZI01000004.1 30976 32868 1 + 1893 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA Cell Division Subsystem including YidCD;
RNA modification and chromosome partitioning cluster;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229915.peg.529 CDS JPZI01000004.1 33131 32928 -2 - 204 COG2110, Macro domain, possibly ADP-ribose binding module - none -
fig|6666666.229915.peg.530 CDS JPZI01000004.1 34223 33366 -2 - 858 NADPH:quinone oxidoreductase 2 NADPH:quinone oxidoreductase 2
fig|6666666.229915.peg.531 CDS JPZI01000004.1 34378 34764 1 + 387 Redox-sensing transcriptional regulator QorR NADPH:quinone oxidoreductase 2
fig|6666666.229915.peg.532 CDS JPZI01000004.1 34799 35416 2 + 618 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB Cell Division Subsystem including YidCD;
RNA methylation;
RNA modification and chromosome partitioning cluster
fig|6666666.229915.peg.533 CDS JPZI01000004.1 35530 35907 1 + 378 FIG048548: ATP synthase protein I2 - none -
fig|6666666.229915.peg.534 CDS JPZI01000004.1 35932 36720 1 + 789 ATP synthase F0 sector subunit a - none -
fig|6666666.229915.peg.535 CDS JPZI01000004.1 36774 37028 3 + 255 ATP synthase F0 sector subunit c (EC 3.6.3.14) - none -
fig|6666666.229915.peg.536 CDS JPZI01000004.1 37078 37548 1 + 471 ATP synthase F0 sector subunit b - none -
fig|6666666.229915.peg.537 CDS JPZI01000004.1 37562 38110 2 + 549 ATP synthase delta chain (EC 3.6.3.14) - none -
fig|6666666.229915.peg.538 CDS JPZI01000004.1 38123 39664 2 + 1542 ATP synthase alpha chain (EC 3.6.3.14) - none -
fig|6666666.229915.peg.539 CDS JPZI01000004.1 39680 40549 2 + 870 ATP synthase gamma chain (EC 3.6.3.14) - none -
fig|6666666.229915.peg.540 CDS JPZI01000004.1 40566 41939 3 + 1374 ATP synthase beta chain (EC 3.6.3.14) - none -
fig|6666666.229915.peg.541 CDS JPZI01000004.1 41981 42409 2 + 429 ATP synthase epsilon chain (EC 3.6.3.14) - none -
fig|6666666.229915.peg.542 CDS JPZI01000004.1 43522 42476 -1 - 1047 ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1) Polyamine Metabolism
fig|6666666.229915.peg.543 CDS JPZI01000004.1 43527 43679 3 + 153 hypothetical protein - none -
fig|6666666.229915.peg.544 CDS JPZI01000004.1 43827 46826 3 + 3000 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229915.peg.545 CDS JPZI01000004.1 46875 47876 3 + 1002 Putative DNA-binding protein in cluster with Type I restriction-modification system Restriction-Modification System
fig|6666666.229915.peg.546 CDS JPZI01000004.1 48123 49379 3 + 1257 Type I restriction-modification system, specificity subunit S (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229915.peg.547 CDS JPZI01000004.1 49538 51142 2 + 1605 Type I restriction-modification system, DNA-methyltransferase subunit M (EC 2.1.1.72) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229915.peg.548 CDS JPZI01000004.1 52160 51324 -2 - 837 PTS system, mannose-specific IID component - none -
fig|6666666.229915.peg.549 CDS JPZI01000004.1 52978 52175 -1 - 804 PTS system, mannose-specific IIC component - none -
fig|6666666.229915.peg.550 CDS JPZI01000004.1 53988 52990 -3 - 999 PTS system, mannose-specific IIA component / PTS system, mannose-specific IIB component (EC 2.7.1.69) Mannose Metabolism;
Sialic Acid Metabolism
fig|6666666.229915.peg.551 CDS JPZI01000004.1 54339 55730 3 + 1392 Permeases of the major facilitator superfamily - none -
fig|6666666.229915.peg.552 CDS JPZI01000004.1 56929 55757 -1 - 1173 Xylose activator XylR (AraC family) Xylose utilization
fig|6666666.229915.peg.553 CDS JPZI01000004.1 56918 57049 2 + 132 hypothetical protein - none -
fig|6666666.229915.peg.554 CDS JPZI01000004.1 58455 57043 -3 - 1413 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229915.peg.555 CDS JPZI01000004.1 59638 58442 -1 - 1197 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229915.peg.556 CDS JPZI01000004.1 60854 59727 -2 - 1128 Xylose ABC transporter, permease protein XylH Xylose utilization
fig|6666666.229915.peg.557 CDS JPZI01000004.1 62369 60858 -2 - 1512 D-xylose transport ATP-binding protein XylG Xylose utilization
fig|6666666.229915.peg.558 CDS JPZI01000004.1 63427 62429 -1 - 999 Xylose ABC transporter, periplasmic xylose-binding protein XylF Xylose utilization
fig|6666666.229915.peg.559 CDS JPZI01000004.1 63685 65004 1 + 1320 Xylose isomerase (EC 5.3.1.5) Xylose utilization
fig|6666666.229915.peg.560 CDS JPZI01000004.1 65054 66526 2 + 1473 Xylulose kinase (EC 2.7.1.17) Xylose utilization
fig|6666666.229915.peg.561 CDS JPZI01000004.1 66894 67061 3 + 168 hypothetical protein - none -
fig|6666666.229915.peg.562 CDS JPZI01000004.1 67039 67191 1 + 153 hypothetical protein - none -
fig|6666666.229915.peg.563 CDS JPZI01000004.1 67228 67473 1 + 246 Huntingtin interacting protein E-like protein - none -
fig|6666666.229915.peg.564 CDS JPZI01000004.1 67780 68235 1 + 456 Mobile element protein - none -
fig|6666666.229915.peg.565 CDS JPZI01000004.1 68437 68610 1 + 174 hypothetical protein - none -
fig|6666666.229915.peg.566 CDS JPZI01000004.1 70384 68750 -1 - 1635 CTP synthase (EC 6.3.4.2) CTP synthase (EC 6.3.4.2) cluster;
pyrimidine conversions
fig|6666666.229915.peg.567 CDS JPZI01000004.1 70612 71916 1 + 1305 Branched-chain amino acid transport system carrier protein - none -
fig|6666666.229915.peg.568 CDS JPZI01000004.1 72960 72376 -3 - 585 NfuA Fe-S protein maturation Biotin biosynthesis Experimental;
DNA uptake cluster
fig|6666666.229915.peg.569 CDS JPZI01000004.1 73757 73071 -2 - 687 Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy Biotin biosynthesis Experimental;
CBSS-216591.1.peg.168
fig|6666666.229915.peg.570 CDS JPZI01000004.1 73728 73859 3 + 132 hypothetical protein - none -
fig|6666666.229915.peg.571 CDS JPZI01000004.1 73901 74713 2 + 813 HMP-PP hydrolase (pyridoxal phosphatase) Cof, detected in genetic screen for thiamin metabolic genes (PMID:15292217) - none -
fig|6666666.229915.peg.572 CDS JPZI01000004.1 74725 74847 1 + 123 hypothetical protein - none -
fig|6666666.229915.peg.573 CDS JPZI01000004.1 74897 76009 2 + 1113 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch;
Threonine and Homoserine Biosynthesis
fig|6666666.229915.peg.574 CDS JPZI01000004.1 76799 76083 -2 - 717 Late competence protein ComEA, DNA receptor - none -
fig|6666666.229915.peg.575 CDS JPZI01000004.1 76962 79532 3 + 2571 ClpB protein Protein chaperones;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229915.peg.576 CDS JPZI01000004.1 80137 79637 -1 - 501 hypothetical protein - none -
fig|6666666.229915.peg.577 CDS JPZI01000004.1 80319 81347 3 + 1029 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) - none -
fig|6666666.229915.peg.578 CDS JPZI01000004.1 81347 81535 2 + 189 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) 5-FCL-like protein
fig|6666666.229915.peg.579 CDS JPZI01000004.1 81609 82433 3 + 825 Diaminopimelate epimerase (EC 5.1.1.7) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229915.peg.580 CDS JPZI01000004.1 82443 83333 3 + 891 Tyrosine recombinase XerC - none -
fig|6666666.229915.peg.581 CDS JPZI01000004.1 83347 84060 1 + 714 Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5@1-phosphoribitylamino)uracil phosphatase Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants
fig|6666666.229915.peg.582 CDS JPZI01000004.1 84583 84158 -1 - 426 Excinuclease ATPase subunit - none -
fig|6666666.229915.peg.583 CDS JPZI01000004.1 84611 84877 2 + 267 hypothetical protein - none -
fig|6666666.229915.peg.584 CDS JPZI01000004.1 84884 85627 2 + 744 3-oxoacyl-[ACP] synthase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229915.peg.585 CDS JPZI01000004.1 85612 86394 1 + 783 FIG018329: 1-acyl-sn-glycerol-3-phosphate acyltransferase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229915.peg.586 CDS JPZI01000004.1 86372 86635 2 + 264 Acyl carrier protein (ACP1) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229915.peg.587 CDS JPZI01000004.1 86638 86889 1 + 252 Acyl carrier protein (ACP2) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229915.peg.588 CDS JPZI01000004.1 86889 88556 3 + 1668 FIGfam138462: Acyl-CoA synthetase, AMP-(fatty) acid ligase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229915.peg.589 CDS JPZI01000004.1 88582 89127 1 + 546 FIG017861: hypothetical protein Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229915.peg.590 CDS JPZI01000004.1 89124 90473 3 + 1350 FIGfam138462: Acyl-CoA synthetase, AMP-(fatty) acid ligase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229915.peg.591 CDS JPZI01000004.1 90485 91204 2 + 720 FIG143263: Glycosyl transferase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229915.peg.592 CDS JPZI01000004.1 91201 92127 1 + 927 Lysophospholipid acyltransferase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229915.peg.593 CDS JPZI01000004.1 92124 92570 3 + 447 FIG002571: 4-hydroxybenzoyl-CoA thioesterase domain protein Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229915.peg.594 CDS JPZI01000004.1 92567 93151 2 + 585 FIG027190: Putative transmembrane protein Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229915.peg.595 CDS JPZI01000004.1 93158 95431 2 + 2274 FIG021862: membrane protein, exporter Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229915.peg.596 CDS JPZI01000004.1 95561 96040 2 + 480 FIG085779: Lipoprotein Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229915.peg.597 CDS JPZI01000004.1 96049 97272 1 + 1224 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) FabV like Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229915.peg.598 CDS JPZI01000004.1 97265 97708 2 + 444 3-hydroxydecanoyl-[ACP] dehydratase (EC 4.2.1.60) Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229915.peg.599 CDS JPZI01000004.1 97758 98486 3 + 729 3-oxoacyl-[ACP] reductase (EC 1.1.1.100) Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229915.peg.600 CDS JPZI01000004.1 99006 100253 3 + 1248 FIG138576: 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229915.peg.601 CDS JPZI01000004.1 102607 101153 -1 - 1455 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) D-gluconate and ketogluconates metabolism;
Pentose phosphate pathway
fig|6666666.229915.peg.602 CDS JPZI01000004.1 102628 102747 1 + 120 hypothetical protein - none -
fig|6666666.229915.peg.603 CDS JPZI01000004.1 103182 102724 -3 - 459 Uncharacterized virulence-associated protein D - none -
fig|6666666.229915.peg.604 CDS JPZI01000004.1 103893 103195 -3 - 699 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type Entner-Doudoroff Pathway;
Pentose phosphate pathway
fig|6666666.229915.peg.605 CDS JPZI01000004.1 105630 104146 -3 - 1485 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) Entner-Doudoroff Pathway;
Pentose phosphate pathway
fig|6666666.229915.peg.606 CDS JPZI01000004.1 106521 105712 -3 - 810 3@1(2@1),5@1-bisphosphate nucleotidase (EC 3.1.3.7) - none -
fig|6666666.229915.peg.607 CDS JPZI01000004.1 106987 106559 -1 - 429 hypothetical protein - none -
fig|6666666.229915.peg.608 CDS JPZI01000004.1 109054 107048 -1 - 2007 oligopeptide transporter - none -
fig|6666666.229915.peg.609 CDS JPZI01000004.1 109422 110048 3 + 627 membrane protein ykgB - none -
fig|6666666.229915.peg.610 CDS JPZI01000004.1 110119 111000 1 + 882 Transcriptional regulator, AraC family - none -
fig|6666666.229915.peg.611 CDS JPZI01000004.1 111553 111005 -1 - 549 ADP compounds hydrolase NudE (EC 3.6.1.-) Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229915.peg.612 CDS JPZI01000004.1 111634 112293 1 + 660 FIG001957: putative hydrolase CBSS-584.1.peg.3382
fig|6666666.229915.peg.613 CDS JPZI01000004.1 112306 112722 1 + 417 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) CBSS-584.1.peg.3382;
Cell division-ribosomal stress proteins cluster;
DNA replication cluster 1;
Heat shock dnaK gene cluster extended
fig|6666666.229915.peg.614 CDS JPZI01000004.1 112791 113663 3 + 873 33 kDa chaperonin (Heat shock protein 33) (HSP33) CBSS-584.1.peg.3382
fig|6666666.229915.peg.615 CDS JPZI01000004.1 113946 113791 -3 - 156 hypothetical protein - none -
fig|6666666.229915.peg.616 CDS JPZI01000004.1 114074 114304 2 + 231 Twin-arginine translocation protein TatA Cluster-based Subsystem Grouping Hypotheticals - perhaps Proteosome Related;
Twin-arginine translocation system
fig|6666666.229915.peg.617 CDS JPZI01000004.1 114308 114970 2 + 663 Twin-arginine translocation protein TatB Twin-arginine translocation system
fig|6666666.229915.peg.618 CDS JPZI01000004.1 115008 115769 3 + 762 Twin-arginine translocation protein TatC Cluster-based Subsystem Grouping Hypotheticals - perhaps Proteosome Related;
Twin-arginine translocation system
fig|6666666.229915.peg.619 CDS JPZI01000004.1 115791 116813 3 + 1023 Porphobilinogen synthase (EC 4.2.1.24) Heme and Siroheme Biosynthesis
fig|6666666.229915.peg.620 CDS JPZI01000004.1 119092 117026 -1 - 2067 Glycyl-tRNA synthetase beta chain (EC 6.1.1.14) Glycyl-tRNA synthetase;
Glycyl-tRNA synthetase containing cluster;
tRNA aminoacylation, Gly
fig|6666666.229915.peg.621 CDS JPZI01000004.1 120026 119163 -2 - 864 Modification methylase EcoRV (EC 2.1.1.72) (Adenine-specific methyltransferase EcoRV) (M.EcoRV) - none -
fig|6666666.229915.peg.622 CDS JPZI01000004.1 120858 120016 -3 - 843 type II restriction endonuclease - none -
fig|6666666.229915.peg.623 CDS JPZI01000004.1 121910 120870 -2 - 1041 FIG074102: hypothetical protein - none -
fig|6666666.229915.peg.624 CDS JPZI01000004.1 122210 121950 -2 - 261 Glutaredoxin-related protein Glutaredoxins
fig|6666666.229915.peg.625 CDS JPZI01000004.1 123132 122260 -3 - 873 Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14) Glycyl-tRNA synthetase;
Glycyl-tRNA synthetase containing cluster;
tRNA aminoacylation, Gly
fig|6666666.229915.peg.626 CDS JPZI01000004.1 123804 123286 -3 - 519 Ferredoxin-type protein NapF (periplasmic nitrate reductase) - none -
fig|6666666.229915.peg.627 CDS JPZI01000004.1 124432 123818 -1 - 615 Putative oxidoreductase component of anaerobic dehydrogenases; Functional role page for Chaperone protein TorD - none -
fig|6666666.229915.peg.628 CDS JPZI01000004.1 125319 124480 -3 - 840 Anaerobic dimethyl sulfoxide reductase chain C (EC 1.8.5.3) - none -
fig|6666666.229915.peg.629 CDS JPZI01000004.1 125938 125321 -1 - 618 Anaerobic dimethyl sulfoxide reductase chain B (EC 1.8.5.3) - none -
fig|6666666.229915.peg.630 CDS JPZI01000004.1 128369 125949 -2 - 2421 Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.5.3) - none -
fig|6666666.229915.peg.631 CDS JPZI01000004.1 128644 128504 -1 - 141 hypothetical protein - none -
fig|6666666.229915.peg.632 CDS JPZI01000004.1 129142 129267 1 + 126 hypothetical protein - none -
fig|6666666.229915.peg.633 CDS JPZI01000004.1 130462 129527 -1 - 936 cell filamentation-like protein - none -
fig|6666666.229915.peg.634 CDS JPZI01000004.1 130622 130443 -2 - 180 hypothetical protein - none -
fig|6666666.229915.peg.635 CDS JPZI01000004.1 131066 130821 -2 - 246 hypothetical protein - none -
fig|6666666.229915.peg.636 CDS JPZI01000004.1 133056 132298 -3 - 759 Ferric siderophore transport system, periplasmic binding protein TonB Hemin transport system;
Ton and Tol transport systems
fig|6666666.229915.peg.637 CDS JPZI01000004.1 133512 133066 -3 - 447 Biopolymer transport protein ExbD/TolR Ton and Tol transport systems
fig|6666666.229915.peg.638 CDS JPZI01000004.1 133986 133516 -3 - 471 Ferric siderophore transport system, biopolymer transport protein ExbB Ton and Tol transport systems
fig|6666666.229915.peg.639 CDS JPZI01000004.1 135414 134152 -3 - 1263 Magnesium and cobalt efflux protein CorC CBSS-56780.10.peg.1536;
Copper homeostasis: copper tolerance;
Glycyl-tRNA synthetase containing cluster;
Magnesium transport;
tRNA-methylthiotransferase containing cluster
fig|6666666.229915.peg.640 CDS JPZI01000004.1 136283 135489 -2 - 795 FIG001154: CcsA-related protein - none -
fig|6666666.229915.peg.641 CDS JPZI01000004.1 136437 137816 3 + 1380 Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1) Bacterial signal recognition particle (SRP);
Universal GTPases
fig|6666666.229915.peg.642 CDS JPZI01000004.1 137992 137855 -1 - 138 hypothetical protein - none -
fig|6666666.229915.peg.643 CDS JPZI01000004.1 139229 138399 -2 - 831 S-formylglutathione hydrolase (EC 3.1.2.12) Glutathione-dependent pathway of formaldehyde detoxification
fig|6666666.229915.peg.644 CDS JPZI01000004.1 140384 139260 -2 - 1125 S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) Glutathione-dependent pathway of formaldehyde detoxification
fig|6666666.229915.peg.645 CDS JPZI01000004.1 140523 140930 3 + 408 Transcriptional regulator, MerR family Cobalt-zinc-cadmium resistance
fig|6666666.229915.peg.646 CDS JPZI01000004.1 141792 141043 -3 - 750 Sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140) - none -
fig|6666666.229915.peg.647 CDS JPZI01000004.1 142906 141944 -1 - 963 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) - none -
fig|6666666.229915.peg.648 CDS JPZI01000004.1 144607 143240 -1 - 1368 Adenylosuccinate lyase (EC 4.3.2.2) CBSS-354.1.peg.876;
Purine conversions
fig|6666666.229915.peg.649 CDS JPZI01000004.1 145242 144631 -3 - 612 FIG002903: a protein of unknown function perhaps involved in purine metabolism CBSS-354.1.peg.876
fig|6666666.229915.peg.650 CDS JPZI01000004.1 145355 145765 2 + 411 Copper metallochaperone, bacterial analog of Cox17 protein Biogenesis of cytochrome c oxidases
fig|6666666.229915.peg.651 CDS JPZI01000004.1 145904 146440 2 + 537 Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR De Novo Pyrimidine Synthesis;
De Novo Pyrimidine Synthesis;
pyrimidine conversions
fig|6666666.229915.peg.652 CDS JPZI01000004.1 146513 147439 2 + 927 Survival protein SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA) (EC 5.2.1.8) Lipopolysaccharide assembly;
Peptidyl-prolyl cis-trans isomerase;
Periplasmic Stress Response
fig|6666666.229915.peg.653 CDS JPZI01000004.1 147518 148381 2 + 864 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase (EC 2.1.1.182) RNA methylation;
Ribosome biogenesis bacterial
fig|6666666.229915.peg.654 CDS JPZI01000004.1 148396 149223 1 + 828 Bis(5@1-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) - none -
fig|6666666.229915.peg.655 CDS JPZI01000004.1 149314 149733 1 + 420 nucleotidyltransferase substrate binding protein, HI0074 family - none -
fig|6666666.229915.peg.656 CDS JPZI01000004.1 149717 150010 2 + 294 Type I restriction-modification system, specificity subunit S (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229915.peg.657 CDS JPZI01000004.1 150038 150670 2 + 633 FIG00696423: hypothetical protein - none -
fig|6666666.229915.peg.658 CDS JPZI01000004.1 150624 150749 3 + 126 hypothetical protein - none -
fig|6666666.229915.peg.659 CDS JPZI01000004.1 150791 153379 2 + 2589 Leucyl-tRNA synthetase (EC 6.1.1.4) CBSS-208964.1.peg.3988;
tRNA aminoacylation, Leu
fig|6666666.229915.peg.660 CDS JPZI01000004.1 153532 153404 -1 - 129 hypothetical protein - none -
fig|6666666.229915.peg.661 CDS JPZI01000004.1 153521 154024 2 + 504 LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B) CBSS-208964.1.peg.3988;
KDO2-Lipid A biosynthesis;
Lipopolysaccharide assembly
fig|6666666.229915.peg.662 CDS JPZI01000004.1 154024 155058 1 + 1035 DNA polymerase III delta subunit (EC 2.7.7.7) CBSS-208964.1.peg.3988
fig|6666666.229915.peg.663 CDS JPZI01000004.1 155953 155549 -1 - 405 Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-) Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229915.peg.664 CDS JPZI01000004.1 158729 156030 -2 - 2700 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) - none -
fig|6666666.229915.peg.665 CDS JPZI01000004.1 159119 158802 -2 - 318 unknown - none -
fig|6666666.229915.peg.666 CDS JPZI01000004.1 159244 159116 -1 - 129 hypothetical protein - none -
fig|6666666.229915.peg.667 CDS JPZI01000004.1 159211 159522 1 + 312 Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives DNA replication cluster 1
fig|6666666.229915.peg.668 CDS JPZI01000004.1 159643 160053 1 + 411 Mercuric resistance operon regulatory protein - none -
fig|6666666.229915.peg.669 CDS JPZI01000004.1 162952 160121 -1 - 2832 Excinuclease ABC subunit A DNA repair, UvrABC system
fig|6666666.229915.peg.670 CDS JPZI01000004.1 163123 163602 1 + 480 Single-stranded DNA-binding protein DNA repair, bacterial;
DNA repair, bacterial RecFOR pathway
fig|6666666.229915.peg.671 CDS JPZI01000004.1 164561 163707 -2 - 855 Methyl-directed repair DNA adenine methylase (EC 2.1.1.72) DNA repair, bacterial
fig|6666666.229915.peg.672 CDS JPZI01000004.1 165652 164564 -1 - 1089 3-dehydroquinate synthase (EC 4.2.3.4) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate);
Type IV pilus
fig|6666666.229915.peg.673 CDS JPZI01000004.1 166206 165679 -3 - 528 Shikimate kinase I (EC 2.7.1.71) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229915.peg.674 CDS JPZI01000004.1 167827 166463 -1 - 1365 Type IV pilus biogenesis protein PilQ; Competence protein E DNA uptake cluster;
Type IV pilus
fig|6666666.229915.peg.675 CDS JPZI01000004.1 168240 167848 -3 - 393 Type IV pilus biogenesis protein PilQ; Competence protein D DNA uptake cluster;
Type IV pilus
fig|6666666.229915.peg.676 CDS JPZI01000004.1 168764 168240 -2 - 525 Competence protein C; Chromosome segregation ATPases DNA uptake cluster
fig|6666666.229915.peg.677 CDS JPZI01000004.1 169279 168761 -1 - 519 Type IV pilus biogenesis protein PilN; Competence protein B DNA uptake cluster;
Type IV pilus
fig|6666666.229915.peg.678 CDS JPZI01000004.1 170102 169290 -2 - 813 Type IV pilus biogenesis protein PilM; Competence protein A DNA uptake cluster;
Type IV pilus
fig|6666666.229915.peg.679 CDS JPZI01000004.1 170231 172798 2 + 2568 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) DNA uptake cluster;
Peptidoglycan Biosynthesis;
Type IV pilus
fig|6666666.229915.peg.680 CDS JPZI01000004.1 172895 173740 2 + 846 Protein involved in catabolism of external DNA DNA processing cluster;
DNA uptake cluster
fig|6666666.229915.peg.681 CDS JPZI01000004.1 173835 175205 3 + 1371 Glutathione reductase (EC 1.8.1.7) Glutathione: Redox cycle
fig|6666666.229915.peg.682 CDS JPZI01000004.1 175982 175338 -2 - 645 Cyclic AMP receptor protein cAMP signaling in bacteria
fig|6666666.229915.peg.683 CDS JPZI01000004.1 176238 176020 -3 - 219 FIG00696234: hypothetical protein - none -
fig|6666666.229915.peg.684 CDS JPZI01000004.1 176861 176262 -2 - 600 Transcriptional regulator SlmA, TetR family - none -
fig|6666666.229915.peg.685 CDS JPZI01000004.1 177316 176861 -1 - 456 Deoxyuridine 5@1-triphosphate nucleotidohydrolase (EC 3.6.1.23) Housecleaning nucleoside triphosphate pyrophosphatases;
Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229915.peg.686 CDS JPZI01000004.1 178584 177385 -3 - 1200 Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) / Phosphopantothenoylcysteine synthetase (EC 6.3.2.5) Coenzyme A Biosynthesis;
Coenzyme A Biosynthesis
fig|6666666.229915.peg.687 CDS JPZI01000004.1 178559 178711 2 + 153 hypothetical protein - none -
fig|6666666.229915.peg.688 CDS JPZI01000004.1 178777 179421 1 + 645 DNA repair protein RadC DNA repair, bacterial
fig|6666666.229915.peg.689 CDS JPZI01000004.1 179693 179866 2 + 174 LSU ribosomal protein L28p Ribosome LSU bacterial
fig|6666666.229915.peg.690 CDS JPZI01000004.1 179878 180048 1 + 171 LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-independent Ribosome LSU bacterial;
Ribosome LSU bacterial
fig|6666666.229915.peg.691 CDS JPZI01000004.1 180131 180946 2 + 816 Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) DNA Repair Base Excision
fig|6666666.229915.peg.692 CDS JPZI01000004.1 182001 180949 -3 - 1053 COG0859: ADP-heptose:LPS heptosyltransferase - none -
fig|6666666.229915.peg.693 CDS JPZI01000004.1 183033 182011 -3 - 1023 COG0859: ADP-heptose:LPS heptosyltransferase - none -
fig|6666666.229915.peg.694 CDS JPZI01000004.1 183726 183034 -3 - 693 Beta-1,4-galactosyltransferase LOS core oligosaccharide biosynthesis
fig|6666666.229915.peg.695 CDS JPZI01000004.1 184000 183788 -1 - 213 LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-dependent Ribosome LSU bacterial;
Ribosome LSU bacterial
fig|6666666.229915.peg.696 CDS JPZI01000004.1 184258 185106 1 + 849 Lipooligosaccharide biosynthesis protein lex-1 (EC 2.-.-.-) - none -
fig|6666666.229915.peg.697 CDS JPZI01000004.1 185131 186120 1 + 990 putative capsular polysaccharide synthesis protein - none -
fig|6666666.229915.peg.698 CDS JPZI01000004.1 186982 186122 -1 - 861 Involved in lipopolysaccharide biosynthesis - none -
fig|6666666.229915.peg.699 CDS JPZI01000004.1 187226 189424 2 + 2199 Helicase PriA essential for oriC/DnaA-independent DNA replication Conserved gene cluster associated with Met-tRNA formyltransferase
fig|6666666.229915.peg.700 CDS JPZI01000004.1 189534 190358 3 + 825 Cell division protein - none -
fig|6666666.229915.peg.701 CDS JPZI01000004.1 190561 191127 1 + 567 Probable Co/Zn/Cd efflux system membrane fusion protein Cobalt-zinc-cadmium resistance
fig|6666666.229915.peg.702 CDS JPZI01000004.1 191153 192349 2 + 1197 Probable Co/Zn/Cd efflux system membrane fusion protein Cobalt-zinc-cadmium resistance
fig|6666666.229915.peg.703 CDS JPZI01000004.1 192363 195461 3 + 3099 RND multidrug efflux transporter; Acriflavin resistance protein Multidrug Resistance Efflux Pumps
fig|6666666.229915.peg.704 CDS JPZI01000004.1 195529 196407 1 + 879 Orf2 - none -
fig|6666666.229915.peg.705 CDS JPZI01000004.1 197063 198010 2 + 948 Magnesium and cobalt transport protein CorA Magnesium transport
fig|6666666.229915.peg.706 CDS JPZI01000004.1 198026 198586 2 + 561 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) CBSS-630.2.peg.3360
fig|6666666.229915.peg.707 CDS JPZI01000004.1 198610 198903 1 + 294 COG1872 - none -
fig|6666666.229915.peg.708 CDS JPZI01000004.1 199021 199680 1 + 660 Oxygen-insensitive NAD(P)H nitroreductase (EC 1.-.-.-) / Dihydropteridine reductase (EC 1.5.1.34) - none -
fig|6666666.229915.peg.709 CDS JPZI01000004.1 199741 201714 1 + 1974 Phosphoglycerol transferase I (EC 2.7.8.20) Synthesis of osmoregulated periplasmic glucans
fig|6666666.229915.peg.710 CDS JPZI01000004.1 202638 201901 -3 - 738 COG1496: Uncharacterized conserved protein - none -
fig|6666666.229915.peg.711 CDS JPZI01000004.1 203614 202640 -1 - 975 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) RNA pseudouridine syntheses;
Ribosome biogenesis bacterial
fig|6666666.229915.peg.712 CDS JPZI01000004.1 203722 204510 1 + 789 Probable component of the lipoprotein assembly complex (forms a complex with YaeT, YfgL, and NlpB) Lipopolysaccharide assembly
fig|6666666.229915.peg.713 CDS JPZI01000004.1 205121 204546 -2 - 576 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) 5-FCL-like protein;
Folate Biosynthesis;
One-carbon metabolism by tetrahydropterines
fig|6666666.229915.peg.714 CDS JPZI01000004.1 205723 205415 -1 - 309 Z-ring-associated protein ZapA Bacterial Cytoskeleton
fig|6666666.229915.peg.715 CDS JPZI01000004.1 205717 206460 1 + 744 FIG001590: Putative conserved exported protein precursor CBSS-87626.3.peg.3639
fig|6666666.229915.peg.716 CDS JPZI01000004.1 206474 207775 2 + 1302 Xaa-Pro aminopeptidase (EC 3.4.11.9) Aminopeptidases (EC 3.4.11.-);
CBSS-87626.3.peg.3639
fig|6666666.229915.peg.717 CDS JPZI01000004.1 208263 208511 3 + 249 SSU ribosomal protein S16p Ribosome SSU bacterial
fig|6666666.229915.peg.718 CDS JPZI01000004.1 208537 209064 1 + 528 16S rRNA processing protein RimM Ribosome biogenesis bacterial
fig|6666666.229915.peg.719 CDS JPZI01000004.1 209129 209878 2 + 750 tRNA (Guanine37-N1) -methyltransferase (EC 2.1.1.31) RNA methylation;
Ribosome biogenesis bacterial;
tRNA modification Bacteria
fig|6666666.229915.peg.720 CDS JPZI01000004.1 209904 210254 3 + 351 LSU ribosomal protein L19p Ribosome LSU bacterial
fig|6666666.229915.peg.721 CDS JPZI01000004.1 210852 210364 -3 - 489 Rod shape-determining protein MreD Bacterial Cell Division;
Bacterial Cytoskeleton;
CBSS-354.1.peg.2917
fig|6666666.229915.peg.722 CDS JPZI01000004.1 211925 210852 -2 - 1074 Rod shape-determining protein MreC Bacterial Cell Division;
Bacterial Cytoskeleton;
CBSS-354.1.peg.2917
fig|6666666.229915.peg.723 CDS JPZI01000004.1 213050 211995 -2 - 1056 Rod shape-determining protein MreB Bacterial Cell Division;
Bacterial Cytoskeleton
fig|6666666.229915.peg.724 CDS JPZI01000004.1 213300 215600 3 + 2301 3@1-to-5@1 exoribonuclease RNase R RNA processing and degradation, bacterial
fig|6666666.229915.peg.725 CDS JPZI01000004.1 215700 216437 3 + 738 23S rRNA (guanosine-2@1-O-) -methyltransferase rlmB (EC 2.1.1.-) RNA methylation
fig|6666666.229915.peg.726 CDS JPZI01000004.1 216481 216750 1 + 270 hypothetical protein - none -
fig|6666666.229915.peg.727 CDS JPZI01000004.1 216771 218213 3 + 1443 Glycerol-3-phosphate transporter - none -
fig|6666666.229915.peg.728 CDS JPZI01000004.1 218307 219446 3 + 1140 Glycerophosphoryl diester phosphodiesterase, periplasmic (EC 3.1.4.46) - none -
fig|6666666.229915.peg.729 CDS JPZI01000004.1 220621 219503 -1 - 1119 Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake CBSS-272943.3.peg.1367;
Conserved gene cluster associated with Met-tRNA formyltransferase;
YrdC-YciO-Sua5 protein family
fig|6666666.229915.peg.730 CDS JPZI01000004.1 221295 220846 -3 - 450 LSU ribosomal protein L9p Primosomal replication protein N clusters with ribosomal proteins;
Ribosome LSU bacterial
fig|6666666.229915.peg.731 CDS JPZI01000004.1 221541 221311 -3 - 231 SSU ribosomal protein S18p @ SSU ribosomal protein S18p, zinc-independent Primosomal replication protein N clusters with ribosomal proteins;
Ribosome SSU bacterial;
Ribosome SSU bacterial
fig|6666666.229915.peg.732 CDS JPZI01000004.1 221880 221554 -3 - 327 Primosomal replication protein N Primosomal replication protein N clusters with ribosomal proteins
fig|6666666.229915.peg.733 CDS JPZI01000004.1 222244 221867 -1 - 378 SSU ribosomal protein S6p Primosomal replication protein N clusters with ribosomal proteins;
Ribosome SSU bacterial
fig|6666666.229915.peg.734 CDS JPZI01000004.1 222296 222421 2 + 126 hypothetical protein - none -
fig|6666666.229915.peg.735 CDS JPZI01000004.1 223019 222396 -2 - 624 SOS-response repressor and protease LexA (EC 3.4.21.88) DNA repair, bacterial
fig|6666666.229915.peg.736 CDS JPZI01000004.1 223213 225651 1 + 2439 Glycerol-3-phosphate acyltransferase (EC 2.3.1.15) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229915.peg.737 CDS JPZI01000004.1 227536 225692 -1 - 1845 Lipid A export ATP-binding/permease protein MsbA - none -
fig|6666666.229915.peg.738 CDS JPZI01000004.1 228542 227625 -2 - 918 transcriptional regulator MtrA - none -
fig|6666666.229915.peg.739 CDS JPZI01000004.1 228646 228987 1 + 342 Possible carboxymuconolactone decarboxylase family protein (EC 4.1.1.44) - none -
fig|6666666.229915.peg.740 CDS JPZI01000004.1 230130 229087 -3 - 1044 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) LOS core oligosaccharide biosynthesis
fig|6666666.229915.peg.741 CDS JPZI01000004.1 230219 230944 2 + 726 3-deoxy-D-manno-octulosonic acid kinase (EC 2.7.1.-) - none -
fig|6666666.229915.peg.742 CDS JPZI01000004.1 231473 230988 -2 - 486 Phosphopantetheine adenylyltransferase (EC 2.7.7.3) CBSS-266117.6.peg.1260;
CBSS-269801.1.peg.1715;
Coenzyme A Biosynthesis
fig|6666666.229915.peg.743 CDS JPZI01000004.1 232757 231474 -2 - 1284 3-deoxy-D-manno-octulosonic-acid transferase (EC 2.-.-.-) KDO2-Lipid A biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.229915.peg.744 CDS JPZI01000004.1 232856 233617 2 + 762 Lipopolysaccharide biosynthesis glycosyltransferase - none -
fig|6666666.229915.peg.745 CDS JPZI01000004.1 234852 233683 -3 - 1170 Lipoprotein NlpD Stationary phase repair cluster
fig|6666666.229915.peg.746 CDS JPZI01000004.1 235060 234869 -1 - 192 Cobalamin biosynthesis protein CobN and related Mg-chelatases - none -
fig|6666666.229915.peg.747 CDS JPZI01000004.1 235650 235075 -3 - 576 FIG139438: lipoprotein B Stationary phase repair cluster
fig|6666666.229915.peg.748 CDS JPZI01000004.1 236418 235678 -3 - 741 5-nucleotidase SurE (EC 3.1.3.5) @ Exopolyphosphatase (EC 3.6.1.11) Housecleaning nucleoside triphosphate pyrophosphatases;
Phosphate metabolism;
Polyphosphate;
Stationary phase repair cluster
fig|6666666.229915.peg.749 CDS JPZI01000004.1 237461 236451 -2 - 1011 tRNA pseudouridine 13 synthase (EC 4.2.1.-) Stationary phase repair cluster;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229915.peg.750 CDS JPZI01000004.1 237937 237458 -1 - 480 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis;
Stationary phase repair cluster
fig|6666666.229915.peg.751 CDS JPZI01000004.1 238629 237934 -3 - 696 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC 2.7.7.60) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis;
Stationary phase repair cluster
fig|6666666.229915.peg.752 CDS JPZI01000004.1 238907 238629 -2 - 279 Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage Bacterial Cell Division;
Bacterial Cytoskeleton;
Cell division-ribosomal stress proteins cluster;
Stationary phase repair cluster
fig|6666666.229915.peg.753 CDS JPZI01000004.1 239059 239733 1 + 675 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) Conserved gene cluster associated with Met-tRNA formyltransferase;
Pentose phosphate pathway;
Riboflavin synthesis cluster
fig|6666666.229915.peg.754 CDS JPZI01000004.1 239737 240411 1 + 675 Phosphoglycolate phosphatase (EC 3.1.3.18) 2-phosphoglycolate salvage;
Glycolate, glyoxylate interconversions
fig|6666666.229915.peg.755 CDS JPZI01000004.1 240688 241338 1 + 651 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) Bacterial Cell Division
fig|6666666.229915.peg.756 CDS JPZI01000004.1 241347 242282 3 + 936 Cell division protein FtsX Bacterial Cell Division
fig|6666666.229915.peg.757 CDS JPZI01000004.1 242767 242318 -1 - 450 Threonine dehydratase biosynthetic (EC 4.3.1.19) - none -
fig|6666666.229915.peg.758 CDS JPZI01000004.1 243710 242736 -2 - 975 Threonine dehydratase biosynthetic (EC 4.3.1.19) - none -
fig|6666666.229915.peg.759 CDS JPZI01000004.1 243981 244145 3 + 165 Mobile element protein - none -
fig|6666666.229915.peg.760 CDS JPZI01000004.1 244166 244399 2 + 234 Mobile element protein - none -
fig|6666666.229915.peg.761 CDS JPZI01000004.1 244427 244963 2 + 537 Mobile element protein - none -
fig|6666666.229915.peg.762 CDS JPZI01000004.1 245620 244997 -1 - 624 Acetolactate synthase large subunit (EC 2.2.1.6) - none -
fig|6666666.229915.peg.763 CDS JPZI01000004.1 245775 246593 3 + 819 HMP-PP hydrolase (pyridoxal phosphatase) Cof, detected in genetic screen for thiamin metabolic genes (PMID:15292217) - none -
fig|6666666.229915.peg.764 CDS JPZI01000004.1 246596 246976 2 + 381 CrcB protein - none -
fig|6666666.229915.peg.765 CDS JPZI01000004.1 247877 246954 -2 - 924 Lysophospholipase L2 (EC 3.1.1.5) Triacylglycerol metabolism
fig|6666666.229915.peg.766 CDS JPZI01000004.1 249015 247870 -3 - 1146 O-antigen ligase LOS core oligosaccharide biosynthesis
fig|6666666.229915.peg.767 CDS JPZI01000004.1 249049 249210 1 + 162 hypothetical protein - none -
fig|6666666.229915.peg.768 CDS JPZI01000004.1 250302 249223 -3 - 1080 Fructose-bisphosphate aldolase class II (EC 4.1.2.13) Glycolysis and Gluconeogenesis
fig|6666666.229915.peg.769 CDS JPZI01000004.1 251531 250368 -2 - 1164 Phosphoglycerate kinase (EC 2.7.2.3) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis
fig|6666666.229915.peg.770 CDS JPZI01000004.1 252343 251648 -1 - 696 Probable ribonuclease HI0526 precursor - none -
fig|6666666.229915.peg.771 CDS JPZI01000004.1 252450 252671 3 + 222 4Fe-4S ferredoxin, iron-sulfur binding - none -
fig|6666666.229915.peg.772 CDS JPZI01000004.1 253814 252735 -2 - 1080 hypothetical tRNA/rRNA methyltransferase yfiF [EC:2.1.1.-] RNA methylation;
tRNA modification Bacteria
fig|6666666.229915.peg.773 CDS JPZI01000004.1 254000 255367 2 + 1368 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229915.peg.774 CDS JPZI01000004.1 259736 255468 -2 - 4269 DNA-directed RNA polymerase beta@1 subunit (EC 2.7.7.6) Mycobacterium virulence operon involved in DNA transcription;
RNA polymerase bacterial
fig|6666666.229915.peg.775 CDS JPZI01000004.1 263867 259839 -2 - 4029 DNA-directed RNA polymerase beta subunit (EC 2.7.7.6) Mycobacterium virulence operon involved in DNA transcription;
RNA polymerase bacterial
fig|6666666.229915.peg.776 CDS JPZI01000004.1 264509 264138 -2 - 372 LSU ribosomal protein L7/L12 (P1/P2) LSU ribosomal proteins cluster;
Ribosome LSU bacterial
fig|6666666.229915.peg.777 CDS JPZI01000004.1 265052 264561 -2 - 492 LSU ribosomal protein L10p (P0) LSU ribosomal proteins cluster;
Ribosome LSU bacterial
fig|6666666.229915.peg.778 CDS JPZI01000004.1 265393 265223 -1 - 171 hypothetical protein - none -
fig|6666666.229915.peg.779 CDS JPZI01000004.1 266097 265408 -3 - 690 LSU ribosomal protein L1p (L10Ae) LSU ribosomal proteins cluster;
Ribosome LSU bacterial
fig|6666666.229915.peg.780 CDS JPZI01000004.1 266530 266102 -1 - 429 LSU ribosomal protein L11p (L12e) LSU ribosomal proteins cluster;
Ribosome LSU bacterial
fig|6666666.229915.peg.781 CDS JPZI01000004.1 267238 266687 -1 - 552 Transcription antitermination protein NusG LSU ribosomal proteins cluster;
Transcription factors bacterial
fig|6666666.229915.peg.782 CDS JPZI01000004.1 267650 267240 -2 - 411 Preprotein translocase subunit SecE (TC 3.A.5.1.1) LSU ribosomal proteins cluster
fig|6666666.229915.peg.783 CDS JPZI01000004.1 268807 268103 -1 - 705 hypothetical protein - none -
fig|6666666.229915.peg.784 CDS JPZI01000004.1 269281 268979 -1 - 303 hypothetical protein - none -
fig|6666666.229915.peg.785 CDS JPZI01000004.1 270099 269542 -3 - 558 NAD(P)H oxidoreductase YRKL (EC 1.6.99.-) @ Putative NADPH-quinone reductase (modulator of drug activity B) @ Flavodoxin 2 Flavodoxin;
Flavodoxin
fig|6666666.229915.peg.786 CDS JPZI01000004.1 270209 271126 2 + 918 LysR family regulatory protein CidR Murein hydrolase regulation and cell death
fig|6666666.229915.peg.787 CDS JPZI01000004.1 271524 271288 -3 - 237 hypothetical protein - none -
fig|6666666.229915.peg.788 CDS JPZI01000004.1 273252 271588 -3 - 1665 PTS system, fructose-specific IIB component (EC 2.7.1.69) / PTS system, fructose-specific IIC component (EC 2.7.1.69) Fructose utilization;
Fructose utilization
fig|6666666.229915.peg.789 CDS JPZI01000004.1 274198 273257 -1 - 942 1-phosphofructokinase (EC 2.7.1.56) Fructose utilization
fig|6666666.229915.peg.790 CDS JPZI01000004.1 275730 274201 -3 - 1530 Fructose-specific phosphocarrier protein HPr (EC 2.7.1.69) / PTS system, fructose-specific IIA component (EC 2.7.1.69) Fructose utilization;
Fructose utilization
fig|6666666.229915.peg.791 CDS JPZI01000004.1 276372 275842 -3 - 531 ATPases involved in chromosome partitioning - none -
fig|6666666.229915.peg.792 CDS JPZI01000004.1 277055 276471 -2 - 585 Molybdopterin-guanine dinucleotide biosynthesis protein MobA Molybdenum cofactor biosynthesis;
ar-431-EC Molybdopterin-guanine dinucleotide biosynthesis
fig|6666666.229915.peg.793 CDS JPZI01000004.1 277139 277405 2 + 267 Protein yihD - none -
fig|6666666.229915.peg.794 CDS JPZI01000004.1 277424 278041 2 + 618 Periplasmic thiol:disulfide interchange protein DsbA Biogenesis of c-type cytochromes;
Periplasmic disulfide interchange
fig|6666666.229915.peg.795 CDS JPZI01000004.1 278101 278430 1 + 330 Protein yifE - none -
fig|6666666.229915.peg.796 CDS JPZI01000004.1 278500 279597 1 + 1098 tRNA (Uracil54-C5-)-methyltransferase (EC 2.1.1.35) - none -
fig|6666666.229915.peg.797 CDS JPZI01000004.1 279599 280357 2 + 759 rRNA small subunit methyltransferase J - none -
fig|6666666.229915.peg.798 CDS JPZI01000004.1 280449 281876 3 + 1428 hypothetical protein - none -
fig|6666666.229915.peg.799 CDS JPZI01000004.1 282096 284696 3 + 2601 DNA mismatch repair protein MutS DNA repair, bacterial MutL-MutS system
fig|6666666.229915.peg.800 CDS JPZI01000004.1 285719 284901 -2 - 819 HMP-PP hydrolase (pyridoxal phosphatase) Cof, detected in genetic screen for thiamin metabolic genes (PMID:15292217) - none -
fig|6666666.229915.peg.801 CDS JPZI01000004.1 287593 285917 -1 - 1677 Lysophospholipase (EC 3.1.1.5) Triacylglycerol metabolism
fig|6666666.229915.peg.802 CDS JPZI01000004.1 288453 287761 -3 - 693 Metal-dependent hydrolase - none -
fig|6666666.229915.peg.803 CDS JPZI01000004.1 289811 288471 -2 - 1341 FIG00782214: hypothetical protein - none -
fig|6666666.229915.peg.804 CDS JPZI01000004.1 291193 289841 -1 - 1353 Low-affinity gluconate/H+ symporter GntU D-gluconate and ketogluconates metabolism
fig|6666666.229915.peg.805 CDS JPZI01000004.1 292058 291282 -2 - 777 Hydroxypyruvate isomerase (EC 5.3.1.22) Glycerate metabolism
fig|6666666.229915.peg.806 CDS JPZI01000004.1 292693 292061 -1 - 633 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases - none -
fig|6666666.229915.peg.807 CDS JPZI01000004.1 293934 292690 -3 - 1245 FIG00641944: hypothetical protein - none -
fig|6666666.229915.peg.808 CDS JPZI01000004.1 294758 293937 -2 - 822 D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) - none -
fig|6666666.229915.peg.809 CDS JPZI01000004.1 295036 295794 1 + 759 Transcriptional regulators of sugar metabolism - none -
fig|6666666.229915.peg.810 CDS JPZI01000004.1 295871 296209 2 + 339 Nitrogen regulatory protein P-II Ammonia assimilation
fig|6666666.229915.peg.811 CDS JPZI01000004.1 296348 297391 2 + 1044 FIG004453: protein YceG like CBSS-323097.3.peg.2594;
Cluster containing Alanyl-tRNA synthetase;
tRNA modification Bacteria
fig|6666666.229915.peg.812 CDS JPZI01000004.1 297393 298025 3 + 633 Thymidylate kinase (EC 2.7.4.9) pyrimidine conversions
fig|6666666.229915.peg.813 CDS JPZI01000004.1 298022 299005 2 + 984 DNA polymerase III delta prime subunit (EC 2.7.7.7) - none -
fig|6666666.229915.peg.814 CDS JPZI01000004.1 299009 299791 2 + 783 Putative deoxyribonuclease YcfH YcfH
fig|6666666.229915.peg.815 CDS JPZI01000004.1 299823 300347 3 + 525 FIG00696143: hypothetical protein - none -
fig|6666666.229915.peg.816 CDS JPZI01000004.1 300484 300344 -1 - 141 hypothetical protein - none -
fig|6666666.229915.peg.817 CDS JPZI01000004.1 300438 301748 3 + 1311 Magnesium and cobalt efflux protein CorC CBSS-56780.10.peg.1536;
Copper homeostasis: copper tolerance;
Glycyl-tRNA synthetase containing cluster;
Magnesium transport;
tRNA-methylthiotransferase containing cluster
fig|6666666.229915.peg.818 CDS JPZI01000004.1 301839 301711 -3 - 129 hypothetical protein - none -
fig|6666666.229915.peg.819 CDS JPZI01000004.1 302353 301868 -1 - 486 Dihydrofolate reductase (EC 1.5.1.3) 5-FCL-like protein;
Folate Biosynthesis
fig|6666666.229915.peg.820 CDS JPZI01000004.1 302857 302393 -1 - 465 FIG001826: putative inner membrane protein CBSS-316275.9.peg.382
fig|6666666.229915.peg.821 CDS JPZI01000004.1 303644 302859 -2 - 786 FIG023911: putative membrane protein CBSS-316275.9.peg.382
fig|6666666.229915.peg.822 CDS JPZI01000004.1 303796 304902 1 + 1107 Glutamate 5-kinase (EC 2.7.2.11) Proline Synthesis
fig|6666666.229915.peg.823 CDS JPZI01000004.1 305596 304964 -1 - 633 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase
fig|6666666.229915.peg.824 CDS JPZI01000004.1 306491 305622 -2 - 870 Phosphatidylserine decarboxylase (EC 4.1.1.65) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229915.peg.825 CDS JPZI01000004.1 306734 308473 2 + 1740 Putative lipase in cluster with Phosphatidate cytidylyltransferase CBSS-316407.3.peg.1371;
Triacylglycerol metabolism
fig|6666666.229915.peg.826 CDS JPZI01000004.1 308475 309791 3 + 1317 Ser/Thr and Tyr protein phosphatase (dual specificity) CBSS-316407.3.peg.1371
fig|6666666.229915.peg.827 CDS JPZI01000004.1 309878 310276 2 + 399 hypothetical protein - none -
fig|6666666.229915.peg.828 CDS JPZI01000004.1 310435 311187 1 + 753 Biotin synthesis protein BioC Biotin biosynthesis Experimental
fig|6666666.229915.peg.829 CDS JPZI01000004.1 311288 311812 2 + 525 COG1399 protein, clustered with ribosomal protein L32p - none -
fig|6666666.229915.peg.830 CDS JPZI01000004.1 311829 311999 3 + 171 LSU ribosomal protein L32p Ribosome LSU bacterial
fig|6666666.229915.peg.831 CDS JPZI01000004.1 312026 313045 2 + 1020 Phosphate:acyl-ACP acyltransferase PlsX Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229915.peg.832 CDS JPZI01000004.1 313092 314042 3 + 951 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) Fatty Acid Biosynthesis FASII
fig|6666666.229915.peg.833 CDS JPZI01000004.1 314147 315085 2 + 939 Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39) Fatty Acid Biosynthesis FASII
fig|6666666.229915.peg.834 CDS JPZI01000004.1 315110 315838 2 + 729 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) Fatty Acid Biosynthesis FASII
fig|6666666.229915.peg.835 CDS JPZI01000004.1 316111 316341 1 + 231 Acyl carrier protein Fatty Acid Biosynthesis FASII;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229915.peg.836 CDS JPZI01000004.1 316579 317814 1 + 1236 Major facilitator superfamily (MFS) transport protein - none -
fig|6666666.229915.peg.837 CDS JPZI01000004.1 317919 317806 -3 - 114 hypothetical protein - none -
fig|6666666.229915.peg.838 CDS JPZI01000004.1 319176 317938 -3 - 1239 Transcription termination factor Rho Transcription factors bacterial
fig|6666666.229915.peg.839 CDS JPZI01000004.1 319500 320756 3 + 1257 ATP-dependent RNA helicase RhlB - none -
fig|6666666.229915.peg.840 CDS JPZI01000004.1 320823 321131 3 + 309 Iojap protein - none -
fig|6666666.229915.peg.841 CDS JPZI01000004.1 321122 321658 2 + 537 LSU m3Psi1915 methyltransferase RlmH RNA methylation;
Ribosome biogenesis bacterial;
tRNA modification Bacteria
fig|6666666.229915.peg.842 CDS JPZI01000004.1 321671 323632 2 + 1962 Penicillin-binding protein 2 (PBP-2) 16S rRNA modification within P site of ribosome;
CBSS-83331.1.peg.3039;
Peptidoglycan Biosynthesis
fig|6666666.229915.peg.843 CDS JPZI01000004.1 323619 324740 3 + 1122 Rod shape-determining protein RodA Bacterial Cytoskeleton;
Peptidoglycan Biosynthesis
fig|6666666.229915.peg.844 CDS JPZI01000004.1 324789 325646 3 + 858 Rare lipoprotein A precursor Peptidoglycan Biosynthesis
fig|6666666.229915.peg.845 CDS JPZI01000004.1 325677 326867 3 + 1191 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) Metallocarboxypeptidases (EC 3.4.17.-);
Murein Hydrolases;
Peptidoglycan Biosynthesis
fig|6666666.229915.peg.846 CDS JPZI01000004.1 326941 327240 1 + 300 Proposed lipoate regulatory protein YbeD Lipoic acid metabolism;
Lipoic acid synthesis cluster
fig|6666666.229915.peg.847 CDS JPZI01000004.1 327286 327924 1 + 639 Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase Lipoic acid metabolism;
Lipoic acid synthesis cluster
fig|6666666.229915.peg.848 CDS JPZI01000004.1 327989 328951 2 + 963 Lipoate synthase Lipoic acid metabolism;
Lipoic acid synthesis cluster
fig|6666666.229915.peg.849 CDS JPZI01000004.1 330508 329099 -1 - 1410 Cysteinyl-tRNA synthetase (EC 6.1.1.16) tRNA aminoacylation, Cys
fig|6666666.229915.peg.850 CDS JPZI01000004.1 330578 331090 2 + 513 Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase;
Queuosine-Archaeosine Biosynthesis
fig|6666666.229915.peg.851 CDS JPZI01000004.1 331184 331336 2 + 153 hypothetical protein - none -
fig|6666666.229915.peg.852 CDS JPZI01000004.1 331329 331610 3 + 282 hypothetical protein - none -
fig|6666666.229915.peg.853 CDS JPZI01000004.1 331613 332401 2 + 789 Putative deoxyribonuclease YjjV Deoxyribose and Deoxynucleoside Catabolism;
YcfH
fig|6666666.229915.peg.854 CDS JPZI01000004.1 333069 332428 -3 - 642 Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) Ribonucleotide reduction
fig|6666666.229915.peg.855 CDS JPZI01000004.1 335477 333351 -2 - 2127 Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) Ribonucleotide reduction
fig|6666666.229915.peg.856 CDS JPZI01000004.1 340868 335730 -2 - 5139 Autotransporter adhesin - none -
fig|6666666.229915.peg.857 CDS JPZI01000004.1 341964 341848 -3 - 117 hypothetical protein - none -
fig|6666666.229915.peg.858 CDS JPZI01000004.1 343768 341981 -1 - 1788 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) - none -
fig|6666666.229915.peg.859 CDS JPZI01000004.1 343816 343947 1 + 132 hypothetical protein - none -
fig|6666666.229915.peg.860 CDS JPZI01000004.1 343966 347442 1 + 3477 DNA polymerase III alpha subunit (EC 2.7.7.7) - none -
fig|6666666.229915.peg.861 CDS JPZI01000004.1 347537 347785 2 + 249 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) CBSS-498211.3.peg.1415;
Conserved gene cluster associated with Met-tRNA formyltransferase;
RNA methylation
fig|6666666.229915.peg.862 CDS JPZI01000004.1 347815 347967 1 + 153 hypothetical protein - none -
fig|6666666.229915.peg.863 CDS JPZI01000004.1 348176 348313 2 + 138 Mobile element protein - none -
fig|6666666.229915.peg.864 CDS JPZI01000004.1 348915 348772 -3 - 144 hypothetical protein - none -
fig|6666666.229915.peg.865 CDS JPZI01000004.1 350362 348908 -1 - 1455 Catalase (EC 1.11.1.6) Oxidative stress;
Protection from Reactive Oxygen Species
fig|6666666.229915.peg.866 CDS JPZI01000004.1 352194 350845 -3 - 1350 NADP-specific glutamate dehydrogenase (EC 1.4.1.4) Arginine and Ornithine Degradation;
Glutamate dehydrogenases;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Proline Synthesis
fig|6666666.229915.peg.867 CDS JPZI01000004.1 352506 352387 -3 - 120 hypothetical protein - none -
fig|6666666.229915.peg.868 CDS JPZI01000004.1 353872 352496 -1 - 1377 Argininosuccinate lyase (EC 4.3.2.1) - none -
fig|6666666.229915.peg.869 CDS JPZI01000004.1 353885 354016 2 + 132 hypothetical protein - none -
fig|6666666.229915.peg.870 CDS JPZI01000004.1 354774 353986 -3 - 789 Mannosyltransferase OCH1 and related enzymes - none -
fig|6666666.229915.peg.871 CDS JPZI01000004.1 355461 356906 3 + 1446 Glutamyl-tRNA synthetase (EC 6.1.1.17) Heme and Siroheme Biosynthesis;
tRNA aminoacylation, Glu and Gln
fig|6666666.229915.peg.872 CDS JPZI01000004.1 357234 358478 3 + 1245 Phage integrase - none -
fig|6666666.229915.peg.873 CDS JPZI01000004.1 358935 359303 3 + 369 Mu-like phage C protein, possible positive regulator of late transcription - none -
fig|6666666.229915.peg.874 CDS JPZI01000004.1 359575 359697 1 + 123 hypothetical protein - none -
fig|6666666.229915.peg.875 CDS JPZI01000004.1 359707 359898 1 + 192 hypothetical protein - none -
fig|6666666.229915.peg.876 CDS JPZI01000004.1 360016 360180 1 + 165 hypothetical protein - none -
fig|6666666.229915.peg.877 CDS JPZI01000004.1 360330 360524 3 + 195 hypothetical protein - none -
fig|6666666.229915.peg.878 CDS JPZI01000004.1 360517 360834 1 + 318 hypothetical protein - none -
fig|6666666.229915.peg.879 CDS JPZI01000004.1 360827 362647 2 + 1821 DNA primase (EC 2.7.7.-) CBSS-349161.4.peg.2417;
Macromolecular synthesis operon
fig|6666666.229915.peg.880 CDS JPZI01000004.1 362955 362806 -3 - 150 hypothetical protein - none -
fig|6666666.229915.peg.881 CDS JPZI01000004.1 362977 363366 1 + 390 Phage protein - none -
fig|6666666.229915.peg.882 CDS JPZI01000004.1 363360 363542 3 + 183 hypothetical protein - none -
fig|6666666.229915.peg.883 CDS JPZI01000004.1 363552 364001 3 + 450 hypothetical protein - none -
fig|6666666.229915.peg.884 CDS JPZI01000004.1 364005 364940 3 + 936 FIG00696993: hypothetical protein - none -
fig|6666666.229915.peg.885 CDS JPZI01000004.1 365425 365634 1 + 210 Cold shock protein CspA Cold shock, CspA family of proteins
fig|6666666.229915.peg.886 CDS JPZI01000004.1 366668 365736 -2 - 933 Ribokinase (EC 2.7.1.15) D-ribose utilization;
Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.229915.peg.887 CDS JPZI01000004.1 366775 366620 -1 - 156 hypothetical protein - none -
fig|6666666.229915.peg.888 CDS JPZI01000004.1 367044 366862 -3 - 183 Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229915.peg.889 CDS JPZI01000004.1 367267 367473 1 + 207 hypothetical protein - none -
fig|6666666.229915.peg.890 CDS JPZI01000004.1 367504 368103 1 + 600 Adenosine (5@1)-pentaphospho-(5@1@1)-adenosine pyrophosphohydrolase (EC 3.6.1.-) CBSS-224911.1.peg.435;
CBSS-364106.7.peg.3204;
Nudix proteins (nucleoside triphosphate hydrolases);
Phosphoglycerate mutase protein family
fig|6666666.229915.peg.891 CDS JPZI01000004.1 368106 368903 3 + 798 Protein of unknown function DUF81 - none -
fig|6666666.229915.peg.892 CDS JPZI01000004.1 368912 369709 2 + 798 Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-) Lipoprotein Biosynthesis
fig|6666666.229915.peg.893 CDS JPZI01000004.1 369706 370557 1 + 852 Thymidylate synthase (EC 2.1.1.45) Folate Biosynthesis;
pyrimidine conversions
fig|6666666.229915.peg.894 CDS JPZI01000004.1 370850 371341 2 + 492 tRNA-specific adenosine-34 deaminase (EC 3.5.4.-) tRNA modification Bacteria;
tRNA processing;
tRNAmodification position 34
fig|6666666.229915.peg.895 CDS JPZI01000004.1 371442 372002 3 + 561 Protein of unknown function DUF414 - none -
fig|6666666.229915.peg.896 CDS JPZI01000004.1 372015 372449 3 + 435 Periplasmic/membrane protein associated with DUF414 - none -
fig|6666666.229915.peg.897 CDS JPZI01000004.1 372468 373835 3 + 1368 Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22) Heme and Siroheme Biosynthesis
fig|6666666.229915.peg.898 CDS JPZI01000004.1 374352 373909 -3 - 444 Histone acetyltransferase HPA2 and related acetyltransferases CBSS-216591.1.peg.168
fig|6666666.229915.peg.899 CDS JPZI01000004.1 374525 375292 2 + 768 Triosephosphate isomerase (EC 5.3.1.1) CBSS-331978.3.peg.2915;
Glycolysis and Gluconeogenesis
fig|6666666.229915.peg.900 CDS JPZI01000004.1 375403 376260 1 + 858 Naphthoate synthase (EC 4.1.3.36) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229915.peg.901 CDS JPZI01000004.1 376340 377371 2 + 1032 O-succinylbenzoate synthase (EC 4.2.1.113) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo;
Muconate lactonizing enzyme family
fig|6666666.229915.peg.902 CDS JPZI01000004.1 377470 377946 1 + 477 3-dehydroquinate dehydratase II (EC 4.2.1.10) CBSS-221988.1.peg.1679;
Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate);
Quinate degradation
fig|6666666.229915.peg.903 CDS JPZI01000004.1 378053 377901 -2 - 153 hypothetical protein - none -
fig|6666666.229915.peg.904 CDS JPZI01000004.1 378070 378537 1 + 468 Biotin carboxyl carrier protein of acetyl-CoA carboxylase CBSS-221988.1.peg.1679;
Fatty Acid Biosynthesis FASII
fig|6666666.229915.peg.905 CDS JPZI01000004.1 378580 379926 1 + 1347 Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14) CBSS-221988.1.peg.1679;
Fatty Acid Biosynthesis FASII
fig|6666666.229915.peg.906 CDS JPZI01000004.1 380081 379947 -2 - 135 hypothetical protein - none -
fig|6666666.229915.peg.907 CDS JPZI01000004.1 380224 380988 1 + 765 Periplasmic protein TonB, links inner and outer membranes - none -
fig|6666666.229915.peg.908 CDS JPZI01000004.1 381053 382495 2 + 1443 FOG: TPR repeat - none -
fig|6666666.229915.peg.909 CDS JPZI01000004.1 382519 382791 1 + 273 FIG003021: Membrane protein CBSS-221988.1.peg.1679
fig|6666666.229915.peg.910 CDS JPZI01000004.1 382788 384215 3 + 1428 Pantothenate:Na+ symporter (TC 2.A.21.1.1) CBSS-221988.1.peg.1679;
Coenzyme A Biosynthesis
fig|6666666.229915.peg.911 CDS JPZI01000004.1 384244 384786 1 + 543 Protein involved in cell division - none -
fig|6666666.229915.peg.912 CDS JPZI01000004.1 384799 385683 1 + 885 Ribosomal protein L11 methyltransferase (EC 2.1.1.-) Heat shock dnaK gene cluster extended;
Ribosome biogenesis bacterial
fig|6666666.229915.peg.913 CDS JPZI01000004.1 385983 386969 3 + 987 tRNA dihydrouridine synthase B (EC 1.-.-.-) tRNA modification Bacteria
fig|6666666.229915.peg.914 CDS JPZI01000004.1 386974 387273 1 + 300 DNA-binding protein Fis DNA structural proteins, bacterial
fig|6666666.229915.peg.915 CDS JPZI01000004.1 387653 387405 -2 - 249 Uncharacterized protein HI0966 - none -
fig|6666666.229915.peg.916 CDS JPZI01000004.1 388432 388109 -1 - 324 Ribosome hibernation protein YfiA Ribosome activity modulation
fig|6666666.229915.peg.917 CDS JPZI01000004.1 390034 388661 -1 - 1374 Sodium/glycine symporter GlyP - none -
fig|6666666.229915.peg.918 CDS JPZI01000004.1 390702 390430 -3 - 273 FIG00904058: hypothetical protein - none -
fig|6666666.229915.peg.919 CDS JPZI01000004.1 390914 390702 -2 - 213 FIG003276: zinc-binding protein - none -
fig|6666666.229915.peg.920 CDS JPZI01000004.1 391527 390904 -3 - 624 Dephospho-CoA kinase (EC 2.7.1.24) Coenzyme A Biosynthesis
fig|6666666.229915.peg.921 CDS JPZI01000004.1 392260 391577 -1 - 684 Leader peptidase (Prepilin peptidase) (EC 3.4.23.43) / N-methyltransferase (EC 2.1.1.-) Type IV pilus;
Type IV pilus
fig|6666666.229915.peg.922 CDS JPZI01000004.1 393483 392260 -3 - 1224 Type II secretory pathway, component PulF / Type IV fimbrial assembly protein PilC Type IV pilus
fig|6666666.229915.peg.923 CDS JPZI01000004.1 394885 393476 -1 - 1410 Type IV fimbrial assembly, ATPase PilB Type IV pilus
fig|6666666.229915.peg.924 CDS JPZI01000004.1 395364 394912 -3 - 453 Type IV pilin PilA Type IV pilus
fig|6666666.229915.peg.925 CDS JPZI01000004.1 395435 396040 2 + 606 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD Recycling of Peptidoglycan Amino Acids
fig|6666666.229915.peg.926 CDS JPZI01000004.1 396985 396515 -1 - 471 Putative sugar isomerase involved in processing of exogenous sialic acid Sialic Acid Metabolism
fig|6666666.229915.peg.927 CDS JPZI01000004.1 397176 399413 3 + 2238 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) Bacterial RNA-metabolizing Zn-dependent hydrolases;
Polyadenylation bacterial
fig|6666666.229915.peg.928 CDS JPZI01000004.1 399492 400394 3 + 903 Lipoprotein nlpI precursor - none -
fig|6666666.229915.peg.929 CDS JPZI01000004.1 400530 402308 3 + 1779 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) - none -
fig|6666666.229915.peg.930 CDS JPZI01000004.1 402926 402387 -2 - 540 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) Cell division-ribosomal stress proteins cluster;
Folate biosynthesis cluster;
Purine conversions
fig|6666666.229915.peg.931 CDS JPZI01000004.1 404526 403165 -3 - 1362 TldE protein, part of TldE/TldD proteolytic complex Putative TldE-TldD proteolytic complex
fig|6666666.229915.peg.932 CDS JPZI01000004.1 404598 405176 3 + 579 FIG138315: Putative alpha helix protein Putative TldE-TldD proteolytic complex
fig|6666666.229915.peg.933 CDS JPZI01000004.1 405863 405363 -2 - 501 Ribonuclease E inhibitor RraA RNA processing and degradation, bacterial
fig|6666666.229915.peg.934 CDS JPZI01000004.1 406849 405914 -1 - 936 1,4-dihydroxy-2-naphthoate polyprenyltransferase (EC 2.5.1.74) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229915.peg.935 CDS JPZI01000004.1 406989 407705 3 + 717 COG1720: Uncharacterized conserved protein tRNA modification Bacteria
fig|6666666.229915.peg.936 CDS JPZI01000004.1 407777 408019 2 + 243 RelB/StbD replicon stabilization protein (antitoxin to RelE/StbE) Toxin-antitoxin replicon stabilization systems
fig|6666666.229915.peg.937 CDS JPZI01000004.1 411517 408353 -1 - 3165 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229915.peg.938 CDS JPZI01000004.1 411731 412228 2 + 498 Transposase and inactivated derivatives - none -
fig|6666666.229915.peg.939 CDS JPZI01000004.1 412239 412355 3 + 117 hypothetical protein - none -
fig|6666666.229915.peg.940 CDS JPZI01000004.1 413615 412338 -2 - 1278 Type I restriction-modification system, specificity subunit S (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229915.peg.941 CDS JPZI01000004.1 414939 413608 -3 - 1332 Type I restriction-modification system, DNA-methyltransferase subunit M (EC 2.1.1.72) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229915.peg.942 CDS JPZI01000004.1 415821 415435 -3 - 387 Cu(I)-responsive transcriptional regulator Copper homeostasis
fig|6666666.229915.peg.943 CDS JPZI01000004.1 415916 416128 2 + 213 Copper chaperone Copper homeostasis
fig|6666666.229915.peg.944 CDS JPZI01000004.1 416220 418379 3 + 2160 Copper-translocating P-type ATPase (EC 3.6.3.4) Copper Transport System;
Copper homeostasis
fig|6666666.229915.peg.945 CDS JPZI01000004.1 418452 419297 3 + 846 membrane protein, putative - none -
fig|6666666.229915.peg.946 CDS JPZI01000004.1 420590 419349 -2 - 1242 ATP-dependent Clp protease ATP-binding subunit ClpX Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229915.peg.947 CDS JPZI01000004.1 421166 420600 -2 - 567 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent;
cAMP signaling in bacteria
fig|6666666.229915.peg.948 CDS JPZI01000004.1 421315 421461 1 + 147 hypothetical protein - none -
fig|6666666.229915.peg.949 CDS JPZI01000004.1 423026 421425 -2 - 1602 Dca - none -
fig|6666666.229915.peg.950 CDS JPZI01000004.1 423130 423261 1 + 132 hypothetical protein - none -
fig|6666666.229915.peg.951 CDS JPZI01000004.1 423258 425531 3 + 2274 Glutathione biosynthesis bifunctional protein gshF (EC 6.3.2.2)(EC 6.3.2.3) Glutathione: Biosynthesis and gamma-glutamyl cycle
fig|6666666.229915.peg.952 CDS JPZI01000004.1 425665 427512 1 + 1848 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase
fig|6666666.229915.peg.953 CDS JPZI01000004.1 427647 428273 3 + 627 Uracil phosphoribosyltransferase (EC 2.4.2.9) De Novo Pyrimidine Synthesis;
pyrimidine conversions
fig|6666666.229915.peg.954 CDS JPZI01000004.1 428397 429650 3 + 1254 Uracil permease De Novo Pyrimidine Synthesis
fig|6666666.229915.peg.955 CDS JPZI01000004.1 429769 430473 1 + 705 Chromosomal replication initiator protein DnaA Cell Division Subsystem including YidCD;
DNA replication cluster 1
fig|6666666.229915.peg.956 CDS JPZI01000004.1 430931 430479 -2 - 453 Putative protein-S-isoprenylcysteine methyltransferase - none -
fig|6666666.229915.peg.957 CDS JPZI01000004.1 431600 430986 -2 - 615 Mlr7403 protein CBSS-290633.1.peg.1906;
CBSS-498211.3.peg.1415
fig|6666666.229915.peg.958 CDS JPZI01000004.1 432888 431611 -3 - 1278 Histidyl-tRNA synthetase (EC 6.1.1.21) CBSS-498211.3.peg.1415;
tRNA aminoacylation, His
fig|6666666.229915.peg.959 CDS JPZI01000004.1 434013 432910 -3 - 1104 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (EC 1.17.7.1) CBSS-498211.3.peg.1415;
CBSS-83331.1.peg.3039;
Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.229915.peg.960 CDS JPZI01000004.1 435074 434025 -2 - 1050 FIG021952: putative membrane protein CBSS-498211.3.peg.1415
fig|6666666.229915.peg.961 CDS JPZI01000004.1 435768 435217 -3 - 552 Type IV pilus biogenesis protein PilF CBSS-498211.3.peg.1415
fig|6666666.229915.peg.962 CDS JPZI01000004.1 436930 435791 -1 - 1140 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) CBSS-498211.3.peg.1415;
Conserved gene cluster associated with Met-tRNA formyltransferase;
RNA methylation
fig|6666666.229915.peg.963 CDS JPZI01000004.1 437225 438274 2 + 1050 L-asparaginase (EC 3.5.1.1) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229915.peg.964 CDS JPZI01000004.1 439741 438377 -1 - 1365 L-serine dehydratase (EC 4.3.1.17) Glycine and Serine Utilization;
Pyruvate Alanine Serine Interconversions
fig|6666666.229915.peg.965 CDS JPZI01000004.1 441075 439834 -3 - 1242 Serine transporter Glycine and Serine Utilization;
Pyruvate Alanine Serine Interconversions
fig|6666666.229915.peg.966 CDS JPZI01000004.1 441732 441232 -3 - 501 Protein sprT - none -
fig|6666666.229915.peg.967 CDS JPZI01000004.1 442955 441801 -2 - 1155 S-adenosylmethionine synthetase (EC 2.5.1.6) Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229915.peg.968 CDS JPZI01000004.1 443431 443162 -1 - 270 SSU ribosomal protein S15p (S13e) Ribosome SSU bacterial
fig|6666666.229915.peg.969 CDS JPZI01000004.1 444276 443527 -3 - 750 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase (EC 4.2.99.20) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229915.peg.970 CDS JPZI01000004.1 446035 444329 -1 - 1707 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase (EC 2.2.1.9) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229915.peg.971 CDS JPZI01000004.1 447330 446026 -3 - 1305 Menaquinone-specific isochorismate synthase (EC 5.4.4.2) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229915.peg.972 CDS JPZI01000004.1 447447 448661 3 + 1215 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229915.peg.973 CDS JPZI01000004.1 449519 448788 -2 - 732 Transcriptional regulator for fatty acid degradation FadR, GntR family - none -
fig|6666666.229915.peg.974 CDS JPZI01000004.1 449715 451259 3 + 1545 Na+/H+ antiporter NhaB - none -
fig|6666666.229915.peg.975 CDS JPZI01000004.1 451283 451822 2 + 540 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation Biogenesis of c-type cytochromes;
Periplasmic disulfide interchange
fig|6666666.229915.peg.976 CDS JPZI01000004.1 452014 451868 -1 - 147 hypothetical protein - none -
fig|6666666.229915.peg.977 CDS JPZI01000004.1 453456 452026 -3 - 1431 Transglycosylase, Slt family - none -
fig|6666666.229915.peg.978 CDS JPZI01000004.1 453830 453477 -2 - 354 Dihydroneopterin aldolase (EC 4.1.2.25) Folate Biosynthesis;
Folate biosynthesis cluster
fig|6666666.229915.peg.979 CDS JPZI01000004.1 453927 454523 3 + 597 Acyl-phosphate:glycerol-3-phosphate O-acyltransferase PlsY Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229915.peg.980 CDS JPZI01000004.1 455056 454613 -1 - 444 FIG00904084: hypothetical protein - none -
fig|6666666.229915.peg.981 CDS JPZI01000004.1 455196 456023 3 + 828 YpfJ protein, zinc metalloprotease superfamily Broadly distributed proteins not in subsystems
fig|6666666.229915.peg.982 CDS JPZI01000004.1 457017 456226 -3 - 792 putative lipoprotein - none -
fig|6666666.229915.peg.983 CDS JPZI01000004.1 458069 457425 -2 - 645 Manganese superoxide dismutase (EC 1.15.1.1) Oxidative stress;
Protection from Reactive Oxygen Species
fig|6666666.229915.peg.984 CDS JPZI01000004.1 460477 458213 -1 - 2265 NADP-dependent malic enzyme (EC 1.1.1.40) Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229915.peg.985 CDS JPZI01000004.1 460615 461397 1 + 783 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses
fig|6666666.229915.peg.986 CDS JPZI01000004.1 461402 462595 2 + 1194 Bicyclomycin resistance protein - none -
fig|6666666.229915.peg.987 CDS JPZI01000004.1 462767 463402 2 + 636 ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA Biogenesis of c-type cytochromes
fig|6666666.229915.peg.988 CDS JPZI01000004.1 463407 464072 3 + 666 ABC transporter involved in cytochrome c biogenesis, CcmB subunit Biogenesis of c-type cytochromes
fig|6666666.229915.peg.989 CDS JPZI01000004.1 464083 464820 1 + 738 Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE Biogenesis of c-type cytochromes
fig|6666666.229915.peg.990 CDS JPZI01000004.1 464872 465045 1 + 174 Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE Biogenesis of c-type cytochromes
fig|6666666.229915.peg.991 CDS JPZI01000004.1 465042 465560 3 + 519 Cytochrome c-type biogenesis protein CcmE, heme chaperone Biogenesis of c-type cytochromes
fig|6666666.229915.peg.992 CDS JPZI01000004.1 465560 467518 2 + 1959 Cytochrome c heme lyase subunit CcmF Biogenesis of c-type cytochromes;
Copper homeostasis
fig|6666666.229915.peg.993 CDS JPZI01000004.1 467547 468092 3 + 546 Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase Biogenesis of c-type cytochromes;
Periplasmic disulfide interchange
fig|6666666.229915.peg.994 CDS JPZI01000004.1 468092 468640 2 + 549 Cytochrome c heme lyase subunit CcmL Biogenesis of c-type cytochromes
fig|6666666.229915.peg.995 CDS JPZI01000004.1 468640 469563 1 + 924 Cytochrome c heme lyase subunit CcmH Biogenesis of c-type cytochromes;
Copper homeostasis
fig|6666666.229915.peg.996 CDS JPZI01000004.1 469699 470322 1 + 624 Parvulin-like peptidyl-prolyl isomerase - none -
fig|6666666.229915.peg.997 CDS JPZI01000004.1 470340 470630 3 + 291 hypothetical protein - none -
fig|6666666.229915.peg.998 CDS JPZI01000004.1 471206 472729 2 + 1524 Cytochrome c552 precursor (EC 1.7.2.2) Soluble cytochromes and functionally related electron carriers
fig|6666666.229915.peg.999 CDS JPZI01000004.1 472752 473456 3 + 705 Cytochrome c-type protein NrfB precursor - none -
fig|6666666.229915.peg.1000 CDS JPZI01000004.1 473453 474130 2 + 678 NrfC protein - none -
fig|6666666.229915.peg.1001 CDS JPZI01000004.1 474127 475092 1 + 966 NrfD protein - none -
fig|6666666.229915.peg.1002 CDS JPZI01000004.1 475479 475643 3 + 165 hypothetical protein - none -
fig|6666666.229915.peg.1003 CDS JPZI01000004.1 475682 477592 2 + 1911 Cytochrome c-type heme lyase subunit nrfE, nitrite reductase complex assembly - none -
fig|6666666.229915.peg.1004 CDS JPZI01000004.1 477585 478115 3 + 531 Putative thiol:disulfide oxidoreductase, nitrite reductase complex assembly - none -
fig|6666666.229915.peg.1005 CDS JPZI01000004.1 478112 479197 2 + 1086 Cytochrome c-type heme lyase subunit nrfF, nitrite reductase complex assembly - none -
fig|6666666.229915.peg.1006 CDS JPZI01000004.1 479194 480393 1 + 1200 NAD(FAD)-utilizing dehydrogenases - none -
fig|6666666.229915.peg.1007 CDS JPZI01000004.1 481127 480552 -2 - 576 Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1) Oxidative stress;
Protection from Reactive Oxygen Species
fig|6666666.229915.peg.1008 CDS JPZI01000004.1 481315 482070 1 + 756 Ubiquinone/menaquinone biosynthesis methyltransferase UbiE (EC 2.1.1.-) Menaquinone and Phylloquinone Biosynthesis;
Ubiquinone Biosynthesis
fig|6666666.229915.peg.1009 CDS JPZI01000004.1 483193 482117 -1 - 1077 DNA recombination and repair protein RecF Cell Division Subsystem including YidCD;
DNA repair, bacterial RecFOR pathway;
DNA replication cluster 1
fig|6666666.229915.peg.1010 CDS JPZI01000004.1 484297 483197 -1 - 1101 DNA polymerase III beta subunit (EC 2.7.7.7) Cell Division Subsystem including YidCD;
DNA replication cluster 1
fig|6666666.229915.peg.1011 CDS JPZI01000004.1 485669 484308 -2 - 1362 Chromosomal replication initiator protein DnaA Cell Division Subsystem including YidCD;
DNA replication cluster 1
fig|6666666.229915.peg.1012 CDS JPZI01000004.1 486085 486219 1 + 135 LSU ribosomal protein L34p Cell Division Subsystem including YidCD;
RNA modification cluster;
Ribosome LSU bacterial
fig|6666666.229915.peg.1013 CDS JPZI01000004.1 486265 486600 1 + 336 Ribonuclease P protein component (EC 3.1.26.5) Cell Division Subsystem including YidCD;
RNA modification cluster;
tRNA processing
fig|6666666.229915.peg.1014 CDS JPZI01000004.1 486555 486818 3 + 264 Protein YidD Cell Division Subsystem including YidCD;
RNA modification cluster
fig|6666666.229915.peg.1015 CDS JPZI01000004.1 486860 488449 2 + 1590 Inner membrane protein translocase component YidC, long form CTP synthase (EC 6.3.4.2) cluster;
Cell Division Subsystem including YidCD;
RNA modification cluster
fig|6666666.229915.peg.1016 CDS JPZI01000004.1 488634 488455 -3 - 180 hypothetical protein - none -
fig|6666666.229915.peg.1017 CDS JPZI01000004.1 488653 490008 1 + 1356 GTPase and tRNA-U34 5-formylation enzyme TrmE Cell Division Subsystem including YidCD;
RNA modification and chromosome partitioning cluster;
RNA modification cluster;
Universal GTPases;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229915.peg.1018 CDS JPZI01000004.1 491030 490122 -2 - 909 GTP-binding protein Era Bacterial Cell Division;
CBSS-176299.4.peg.1292;
Glycyl-tRNA synthetase containing cluster;
Universal GTPases
fig|6666666.229915.peg.1019 CDS JPZI01000004.1 491707 491027 -1 - 681 Ribonuclease III (EC 3.1.26.3) CBSS-176299.4.peg.1292;
RNA processing and degradation, bacterial
fig|6666666.229915.peg.1020 CDS JPZI01000004.1 492736 491714 -1 - 1023 Signal peptidase I (EC 3.4.21.89) CBSS-176299.4.peg.1292;
Signal peptidase
fig|6666666.229915.peg.1021 CDS JPZI01000004.1 494543 492747 -2 - 1797 Translation elongation factor LepA Heat shock dnaK gene cluster extended;
Translation elongation factors bacterial;
Universal GTPases
fig|6666666.229915.peg.1022 CDS JPZI01000004.1 494606 494728 2 + 123 hypothetical protein - none -
fig|6666666.229915.peg.1023 CDS JPZI01000004.1 495095 494712 -2 - 384 Pyruvate formate-lyase (EC 2.3.1.54) Fermentations: Mixed acid
fig|6666666.229915.peg.1024 CDS JPZI01000004.1 495370 496038 1 + 669 Uracil-DNA glycosylase, family 1 DNA Repair Base Excision;
Uracil-DNA glycosylase
fig|6666666.229915.peg.1025 CDS JPZI01000004.1 496060 496839 1 + 780 UPF0246 protein YaaA - none -
fig|6666666.229915.peg.1026 CDS JPZI01000004.1 496843 497409 1 + 567 FIG00696199: hypothetical protein - none -
fig|6666666.229915.peg.1027 CDS JPZI01000004.1 497409 498329 3 + 921 Cobalt-zinc-cadmium resistance protein Cobalt-zinc-cadmium resistance
fig|6666666.229915.peg.1028 CDS JPZI01000004.1 498391 499356 1 + 966 6-phosphofructokinase (EC 2.7.1.11) D-Tagatose and Galactitol Utilization;
Glycolysis and Gluconeogenesis
fig|6666666.229915.peg.1029 CDS JPZI01000004.1 500636 499461 -2 - 1176 23S rRNA (Uracil-5-) -methyltransferase rumB (EC 2.1.1.-) RNA methylation
fig|6666666.229915.peg.1030 CDS JPZI01000004.1 501765 500638 -3 - 1128 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) Murein Hydrolases;
Recycling of Peptidoglycan Amino Sugars
fig|6666666.229915.peg.1031 CDS JPZI01000004.1 502120 501767 -1 - 354 Predicted periplasmic lipoprotein - none -
fig|6666666.229915.peg.1032 CDS JPZI01000004.1 502471 502121 -1 - 351 Bis(5@1-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17) pyrimidine conversions
fig|6666666.229915.peg.1033 CDS JPZI01000004.1 502814 503635 2 + 822 Formate efflux transporter (TC 2.A.44 family) Fermentations: Mixed acid
fig|6666666.229915.peg.1034 CDS JPZI01000004.1 503734 506046 1 + 2313 Pyruvate formate-lyase (EC 2.3.1.54) Fermentations: Mixed acid
fig|6666666.229915.peg.1035 CDS JPZI01000004.1 506140 506427 1 + 288 hypothetical protein - none -
fig|6666666.229915.peg.1036 CDS JPZI01000004.1 506489 507229 2 + 741 Pyruvate formate-lyase activating enzyme (EC 1.97.1.4) Fermentations: Mixed acid
fig|6666666.229915.peg.1037 CDS JPZI01000004.1 507371 508234 2 + 864 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229915.peg.1038 CDS JPZI01000004.1 509718 508306 -3 - 1413 Putative cell division protein precursor - none -
fig|6666666.229915.peg.1039 CDS JPZI01000004.1 510469 509726 -1 - 744 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229915.peg.1040 CDS JPZI01000004.1 510580 511311 1 + 732 UDP-2,3-diacylglucosamine diphosphatase (EC 3.6.1.54) KDO2-Lipid A biosynthesis;
Llipid A biosynthesis cluster
fig|6666666.229915.peg.1041 CDS JPZI01000004.1 511304 511810 2 + 507 Arabinose efflux permease - none -
fig|6666666.229915.peg.1042 CDS JPZI01000004.1 511873 512550 1 + 678 YheO-like PAS domain - none -
fig|6666666.229915.peg.1043 CDS JPZI01000004.1 513828 512614 -3 - 1215 Tyrosine-specific transport protein - none -
fig|6666666.229915.peg.1044 CDS JPZI01000004.1 515366 513990 -2 - 1377 Tryptophanase (EC 4.1.99.1) - none -
fig|6666666.229915.peg.1045 CDS JPZI01000004.1 516216 515695 -3 - 522 Translation elongation factor P Translation elongation factor P lysylation;
Translation elongation factors bacterial
fig|6666666.229915.peg.1046 CDS JPZI01000004.1 516295 517314 1 + 1020 Lysine 2,3-aminomutase (EC 5.4.3.2) - none -
fig|6666666.229915.peg.1047 CDS JPZI01000004.1 517485 518798 3 + 1314 Cell envelope opacity-associated protein A - none -
fig|6666666.229915.peg.1048 CDS JPZI01000004.1 518860 519234 1 + 375 opacity associated protein - none -
fig|6666666.229915.peg.1049 CDS JPZI01000004.1 520231 519326 -1 - 906 DNA recombination-dependent growth factor C DNA repair, bacterial
fig|6666666.229915.peg.1050 CDS JPZI01000004.1 520294 521109 1 + 816 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) A Hypothetical Protein Related to Proline Metabolism;
CBSS-630.2.peg.3360;
Proline Synthesis
fig|6666666.229915.peg.1051 CDS JPZI01000004.1 521109 522272 3 + 1164 Probable 3-phenylpropionic acid transporter - none -
fig|6666666.229915.peg.1052 CDS JPZI01000004.1 522275 523168 2 + 894 Tyrosine recombinase XerD - none -
fig|6666666.229915.peg.1053 CDS JPZI01000004.1 523332 524630 3 + 1299 Cell division trigger factor (EC 5.2.1.8) Bacterial Cell Division
fig|6666666.229915.peg.1054 CDS JPZI01000004.1 524784 524644 -3 - 141 hypothetical protein - none -
fig|6666666.229915.peg.1055 CDS JPZI01000004.1 526025 525081 -2 - 945 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.229915.peg.1056 CDS JPZI01000004.1 526519 526025 -1 - 495 Lipoprotein signal peptidase (EC 3.4.23.36) Lipoprotein Biosynthesis;
Signal peptidase
fig|6666666.229915.peg.1057 CDS JPZI01000004.1 529423 526601 -1 - 2823 Isoleucyl-tRNA synthetase (EC 6.1.1.5) tRNA aminoacylation, Ile
fig|6666666.229915.peg.1058 CDS JPZI01000004.1 529667 529461 -2 - 207 FIG01055344: hypothetical protein - none -
fig|6666666.229915.peg.1059 CDS JPZI01000004.1 530764 529838 -1 - 927 Riboflavin kinase (EC 2.7.1.26) / FMN adenylyltransferase (EC 2.7.7.2) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin, FMN and FAD metabolism in plants;
riboflavin to FAD;
riboflavin to FAD
fig|6666666.229915.peg.1060 CDS JPZI01000004.1 532419 530842 -3 - 1578 Proposed peptidoglycan lipid II flippase MurJ Peptidoglycan lipid II flippase
fig|6666666.229915.peg.1061 CDS JPZI01000004.1 532696 532959 1 + 264 SSU ribosomal protein S20p Ribosome SSU bacterial
fig|6666666.229915.peg.1062 CDS JPZI01000004.1 533746 533069 -1 - 678 Lipoate-protein ligase A Lipoic acid metabolism
fig|6666666.229915.peg.1063 CDS JPZI01000004.1 533822 534766 2 + 945 Phosphoserine phosphatase (EC 3.1.3.3) Glycine and Serine Utilization;
Serine Biosynthesis;
Serine Biosynthesis
fig|6666666.229915.peg.1064 CDS JPZI01000004.1 534777 535268 3 + 492 FIG001943: hypothetical protein YajQ Broadly distributed proteins not in subsystems
fig|6666666.229915.peg.1065 CDS JPZI01000004.1 536157 535345 -3 - 813 Outer membrane lipoprotein e (P4) / NMN 5@1-nucleotidase, extracellular (EC 3.1.3.5) NAD and NADP cofactor biosynthesis global
fig|6666666.229915.peg.1066 CDS JPZI01000004.1 537304 536285 -1 - 1020 Zinc ABC transporter, periplasmic-binding protein ZnuA - none -
fig|6666666.229915.peg.1067 CDS JPZI01000004.1 538174 537404 -1 - 771 CsdL (EC-YgdL) protein of the HesA/MoeB/ThiF family, part of the CsdA-E-L sulfur transfer pathway - none -
fig|6666666.229915.peg.1068 CDS JPZI01000004.1 539292 538174 -3 - 1119 Membrane-bound lytic murein transglycosylase A precursor (EC 3.2.1.-) Murein Hydrolases
fig|6666666.229915.peg.1069 CDS JPZI01000004.1 541037 539664 -2 - 1374 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (EC 6.3.2.-) Peptidoglycan biosynthesis--gjo;
Recycling of Peptidoglycan Amino Acids
fig|6666666.229915.peg.1070 CDS JPZI01000004.1 541194 542201 3 + 1008 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) Cluster Ytf and putative sugar transporter;
Glycolysis and Gluconeogenesis;
Putative sugar ABC transporter (ytf cluster)
fig|6666666.229915.peg.1071 CDS JPZI01000004.1 543465 542659 -3 - 807 Permeases of the drug/metabolite transporter (DMT) superfamily - none -
fig|6666666.229915.peg.1072 CDS JPZI01000004.1 543480 543596 3 + 117 hypothetical protein - none -
fig|6666666.229915.peg.1073 CDS JPZI01000004.1 543676 544335 1 + 660 putative membrane protein - none -
fig|6666666.229915.peg.1074 CDS JPZI01000004.1 544356 545618 3 + 1263 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) Proline Synthesis
fig|6666666.229915.peg.1075 CDS JPZI01000004.1 546812 546174 -2 - 639 hypothetical protein - none -
fig|6666666.229915.peg.1076 CDS JPZI01000005.1 838 359 -1 - 480 COG1896: Predicted hydrolases of HD superfamily - none -
fig|6666666.229915.peg.1077 CDS JPZI01000005.1 845 985 2 + 141 hypothetical protein - none -
fig|6666666.229915.peg.1078 CDS JPZI01000005.1 1498 938 -1 - 561 hypothetical protein - none -
fig|6666666.229915.peg.1079 CDS JPZI01000005.1 1884 1507 -3 - 378 hypothetical protein - none -
fig|6666666.229915.peg.1080 CDS JPZI01000005.1 2041 1928 -1 - 114 hypothetical protein - none -
fig|6666666.229915.peg.1081 CDS JPZI01000005.1 2465 2301 -2 - 165 hypothetical protein - none -
fig|6666666.229915.peg.1082 CDS JPZI01000005.1 2666 2475 -2 - 192 hypothetical protein - none -
fig|6666666.229915.peg.1083 CDS JPZI01000005.1 3423 2902 -3 - 522 inhibition of exonuclease digestion of Mu DNA - none -
fig|6666666.229915.peg.1084 CDS JPZI01000005.1 3777 3436 -3 - 342 hypothetical protein - none -
fig|6666666.229915.peg.1085 CDS JPZI01000005.1 4958 3780 -2 - 1179 Eha - none -
fig|6666666.229915.peg.1086 CDS JPZI01000005.1 6743 4971 -2 - 1773 Phage transposase - none -
fig|6666666.229915.peg.1087 CDS JPZI01000005.1 7699 6755 -1 - 945 FIG00697991: hypothetical protein - none -
fig|6666666.229915.peg.1088 CDS JPZI01000005.1 8016 7711 -3 - 306 Transcriptional regulator, IclR family - none -
fig|6666666.229915.peg.1089 CDS JPZI01000005.1 8204 8028 -2 - 177 hypothetical protein - none -
fig|6666666.229915.peg.1090 CDS JPZI01000005.1 8642 8334 -2 - 309 hypothetical protein - none -
fig|6666666.229915.peg.1091 CDS JPZI01000005.1 8913 8674 -3 - 240 hypothetical protein - none -
fig|6666666.229915.peg.1092 CDS JPZI01000005.1 8975 9349 2 + 375 hypothetical protein - none -
fig|6666666.229915.peg.1093 CDS JPZI01000005.1 9710 9868 2 + 159 hypothetical protein - none -
fig|6666666.229915.peg.1094 CDS JPZI01000005.1 9901 10878 1 + 978 hypothetical protein - none -
fig|6666666.229915.peg.1095 CDS JPZI01000005.1 11276 10929 -2 - 348 gene 66 protein - none -
fig|6666666.229915.peg.1096 CDS JPZI01000005.1 11431 11799 1 + 369 Phage protein - none -
fig|6666666.229915.peg.1097 CDS JPZI01000005.1 11802 12443 3 + 642 Phage lysin #murein transglycosylase - none -
fig|6666666.229915.peg.1098 CDS JPZI01000005.1 12434 12880 2 + 447 hypothetical protein - none -
fig|6666666.229915.peg.1099 CDS JPZI01000005.1 12977 13327 2 + 351 hypothetical protein - none -
fig|6666666.229915.peg.1100 CDS JPZI01000005.1 13329 13634 3 + 306 Phage protein - none -
fig|6666666.229915.peg.1101 CDS JPZI01000005.1 13643 14182 2 + 540 Phage terminase, small subunit Phage packaging machinery
fig|6666666.229915.peg.1102 CDS JPZI01000005.1 14182 15792 1 + 1611 Phage terminase, large subunit Phage packaging machinery
fig|6666666.229915.peg.1103 CDS JPZI01000005.1 15795 17297 3 + 1503 Mu-like prophage FluMu protein gp29 - none -
fig|6666666.229915.peg.1104 CDS JPZI01000005.1 17290 18543 1 + 1254 Phage (Mu-like) virion morphogenesis protein - none -
fig|6666666.229915.peg.1105 CDS JPZI01000005.1 18646 19137 1 + 492 possible bacteriophage Mu G-like protein - none -
fig|6666666.229915.peg.1106 CDS JPZI01000005.1 19365 20393 3 + 1029 FIG00698681: hypothetical protein - none -
fig|6666666.229915.peg.1107 CDS JPZI01000005.1 20390 20755 2 + 366 Phage protein - none -
fig|6666666.229915.peg.1108 CDS JPZI01000005.1 20818 21744 1 + 927 hypothetical protein - none -
fig|6666666.229915.peg.1109 CDS JPZI01000005.1 21754 22266 1 + 513 Phage protein - none -
fig|6666666.229915.peg.1110 CDS JPZI01000005.1 22266 22712 3 + 447 Phage protein - none -
fig|6666666.229915.peg.1111 CDS JPZI01000005.1 22709 22981 2 + 273 hypothetical protein - none -
fig|6666666.229915.peg.1112 CDS JPZI01000005.1 22982 23728 2 + 747 Phage protein - none -
fig|6666666.229915.peg.1113 CDS JPZI01000005.1 23775 24194 3 + 420 Phage protein - none -
fig|6666666.229915.peg.1114 CDS JPZI01000005.1 24173 24385 2 + 213 hypothetical protein - none -
fig|6666666.229915.peg.1115 CDS JPZI01000005.1 24622 24407 -1 - 216 hypothetical protein - none -
fig|6666666.229915.peg.1116 CDS JPZI01000005.1 24636 27926 3 + 3291 Phage tail length tape-measure protein Phage tail proteins;
Phage tail proteins 2
fig|6666666.229915.peg.1117 CDS JPZI01000005.1 27939 28937 3 + 999 Phage protein - none -
fig|6666666.229915.peg.1118 CDS JPZI01000005.1 28940 29902 2 + 963 Phage protein - none -
fig|6666666.229915.peg.1119 CDS JPZI01000005.1 29908 31599 1 + 1692 FIG00698772: hypothetical protein - none -
fig|6666666.229915.peg.1120 CDS JPZI01000005.1 31623 32429 3 + 807 Phage FAD/FMN-containing dehydrogenase - none -
fig|6666666.229915.peg.1121 CDS JPZI01000005.1 32451 32699 3 + 249 hypothetical protein - none -
fig|6666666.229915.peg.1122 CDS JPZI01000005.1 32704 32916 1 + 213 hypothetical protein - none -
fig|6666666.229915.peg.1123 CDS JPZI01000005.1 32916 35639 3 + 2724 FIG00696772: hypothetical protein - none -
fig|6666666.229915.peg.1124 CDS JPZI01000006.1 335 132 -2 - 204 Osmotically inducible lipoprotein B precursor Osmotic stress cluster
fig|6666666.229915.peg.1125 CDS JPZI01000006.1 1354 422 -1 - 933 Biotin--protein ligase (EC 6.3.4.9, EC 6.3.4.10, EC 6.3.4.11, EC 6.3.4.15) - none -
fig|6666666.229915.peg.1126 CDS JPZI01000006.1 1496 2962 2 + 1467 Inosine-5@1-monophosphate dehydrogenase (EC 1.1.1.205) Purine conversions;
Purine salvage cluster
fig|6666666.229915.peg.1127 CDS JPZI01000006.1 3138 3317 3 + 180 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) CBSS-498211.3.peg.1415;
Conserved gene cluster associated with Met-tRNA formyltransferase;
RNA methylation
fig|6666666.229915.peg.1128 CDS JPZI01000006.1 4165 3716 -1 - 450 ImpA - none -
fig|6666666.229915.peg.1129 CDS JPZI01000006.1 5070 4738 -3 - 333 Mobile element protein - none -
fig|6666666.229915.peg.1130 CDS JPZI01000006.1 5523 5290 -3 - 234 hypothetical protein - none -
fig|6666666.229915.peg.1131 CDS JPZI01000006.1 5852 5706 -2 - 147 hypothetical protein - none -
fig|6666666.229915.peg.1132 CDS JPZI01000006.1 6710 5973 -2 - 738 Zeta toxin - none -
fig|6666666.229915.peg.1133 CDS JPZI01000006.1 7006 6713 -1 - 294 hypothetical protein - none -
fig|6666666.229915.peg.1134 CDS JPZI01000006.1 7214 7531 2 + 318 Mobile element protein - none -
fig|6666666.229915.peg.1135 CDS JPZI01000006.1 7898 8416 2 + 519 hypothetical protein - none -
fig|6666666.229915.peg.1136 CDS JPZI01000006.1 8538 9572 3 + 1035 DNA polymerase IV (EC 2.7.7.7) DNA repair, bacterial
fig|6666666.229915.peg.1137 CDS JPZI01000006.1 9733 10560 1 + 828 Dihydropteroate synthase (EC 2.5.1.15) Folate Biosynthesis;
Folate biosynthesis cluster
fig|6666666.229915.peg.1138 CDS JPZI01000006.1 10590 11927 3 + 1338 Phosphoglucosamine mutase (EC 5.4.2.10) Sialic Acid Metabolism;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229915.peg.1139 CDS JPZI01000006.1 11940 12407 3 + 468 Phosphohistidine phosphatase SixA - none -
fig|6666666.229915.peg.1140 CDS JPZI01000006.1 12630 13175 3 + 546 FIG00696317: hypothetical protein - none -
fig|6666666.229915.peg.1141 CDS JPZI01000006.1 13859 13197 -2 - 663 Septum site-determining protein MinC Bacterial Cell Division;
Bacterial Cytoskeleton;
Septum site-determining cluster Min
fig|6666666.229915.peg.1142 CDS JPZI01000006.1 13982 14194 2 + 213 Protein YcgL CBSS-243277.1.peg.4359
fig|6666666.229915.peg.1143 CDS JPZI01000006.1 15125 14616 -2 - 510 probable lipoprotein NlpC - none -
fig|6666666.229915.peg.1144 CDS JPZI01000006.1 16147 15293 -1 - 855 2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase (EC 2.5.1.55) A Gammaproteobacteria Cluster Relating to Translation;
KDO2-Lipid A biosynthesis
fig|6666666.229915.peg.1145 CDS JPZI01000006.1 17167 16157 -1 - 1011 Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2 A Gammaproteobacteria Cluster Relating to Translation;
CBSS-216600.3.peg.802;
Translation termination factors bacterial;
YrdC-YciO-Sua5 protein family
fig|6666666.229915.peg.1146 CDS JPZI01000006.1 18293 17211 -2 - 1083 Peptide chain release factor 1 A Gammaproteobacteria Cluster Relating to Translation;
CBSS-216600.3.peg.802;
Translation termination factors bacterial;
YrdC-YciO-Sua5 protein family
fig|6666666.229915.peg.1147 CDS JPZI01000006.1 18888 18433 -3 - 456 Outer membrane lipoprotein - none -
fig|6666666.229915.peg.1148 CDS JPZI01000006.1 19517 18930 -2 - 588 Protein yecM - none -
fig|6666666.229915.peg.1149 CDS JPZI01000006.1 19614 21347 3 + 1734 Arginyl-tRNA synthetase (EC 6.1.1.19) tRNA aminoacylation, Arg
fig|6666666.229915.peg.1150 CDS JPZI01000006.1 23146 21713 -1 - 1434 GTP-binding protein - none -
fig|6666666.229915.peg.1151 CDS JPZI01000006.1 23236 23349 1 + 114 hypothetical protein - none -
fig|6666666.229915.peg.1152 CDS JPZI01000006.1 23423 25327 2 + 1905 Chaperone protein DnaK GroEL GroES;
Heat shock dnaK gene cluster extended;
Protein chaperones
fig|6666666.229915.peg.1153 CDS JPZI01000006.1 25873 27000 1 + 1128 Chaperone protein DnaJ GroEL GroES;
Heat shock dnaK gene cluster extended;
Protein chaperones
fig|6666666.229915.peg.1154 CDS JPZI01000006.1 27147 27380 3 + 234 hypothetical protein - none -
fig|6666666.229915.peg.1155 CDS JPZI01000006.1 27439 27663 1 + 225 hypothetical protein - none -
fig|6666666.229915.peg.1156 CDS JPZI01000006.1 27745 27617 -1 - 129 hypothetical protein - none -
fig|6666666.229915.peg.1157 CDS JPZI01000006.1 28085 27738 -2 - 348 Programmed cell death toxin ChpB - none -
fig|6666666.229915.peg.1158 CDS JPZI01000006.1 28342 28085 -1 - 258 hypothetical protein - none -
fig|6666666.229915.peg.1159 CDS JPZI01000006.1 29535 28483 -3 - 1053 Outer membrane protein P2 precursor - none -
fig|6666666.229915.peg.1160 CDS JPZI01000006.1 30939 29749 -3 - 1191 Cystathionine beta-lyase (EC 4.4.1.8) Methionine Biosynthesis
fig|6666666.229915.peg.1161 CDS JPZI01000006.1 31194 31751 3 + 558 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5) CBSS-316407.3.peg.1371;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229915.peg.1162 CDS JPZI01000006.1 32174 33007 2 + 834 Chromosome (plasmid) partitioning protein ParA Bacterial Cell Division;
Bacterial Cytoskeleton;
Cell Division Subsystem including YidCD;
RNA modification and chromosome partitioning cluster
fig|6666666.229915.peg.1163 CDS JPZI01000006.1 33020 34381 2 + 1362 Replicative DNA helicase (EC 3.6.1.-) - none -
fig|6666666.229915.peg.1164 CDS JPZI01000006.1 34392 36065 3 + 1674 Protein with ParB-like nuclease domain in PFGI-1-like cluster - none -
fig|6666666.229915.peg.1165 CDS JPZI01000006.1 36085 36633 1 + 549 FIG004780: hypothetical protein in PFGI-1-like cluster - none -
fig|6666666.229915.peg.1166 CDS JPZI01000006.1 36746 38065 2 + 1320 FIG141751: hypothetical protein in PFGI-1-like cluster - none -
fig|6666666.229915.peg.1167 CDS JPZI01000006.1 38674 39459 1 + 786 FIG141694: hypothetical protein in PFGI-1-like cluster - none -
fig|6666666.229915.peg.1168 CDS JPZI01000006.1 39576 39968 3 + 393 Integrase regulator R - none -
fig|6666666.229915.peg.1169 CDS JPZI01000006.1 40156 40617 1 + 462 Single-stranded DNA-binding protein DNA repair, bacterial;
DNA repair, bacterial RecFOR pathway
fig|6666666.229915.peg.1170 CDS JPZI01000006.1 40660 41136 1 + 477 hypothetical protein - none -
fig|6666666.229915.peg.1171 CDS JPZI01000006.1 41320 41523 1 + 204 hypothetical protein - none -
fig|6666666.229915.peg.1172 CDS JPZI01000006.1 41462 42631 2 + 1170 Cytosine-specific DNA methyltransferase (EC 2.1.1.37) - none -
fig|6666666.229915.peg.1173 CDS JPZI01000006.1 44014 43025 -1 - 990 Chromosome segregation ATPases - none -
fig|6666666.229915.peg.1174 CDS JPZI01000006.1 44146 44355 1 + 210 possible filamentous phage CTX RstR-like repressor - none -
fig|6666666.229915.peg.1175 CDS JPZI01000006.1 44333 44605 2 + 273 hypothetical protein - none -
fig|6666666.229915.peg.1176 CDS JPZI01000006.1 44616 46673 3 + 2058 DNA topoisomerase III (EC 5.99.1.2) DNA processing cluster;
DNA topoisomerases, Type I, ATP-independent
fig|6666666.229915.peg.1177 CDS JPZI01000006.1 47598 47756 3 + 159 hypothetical protein - none -
fig|6666666.229915.peg.1178 CDS JPZI01000006.1 47844 48305 3 + 462 Putative uncharacterized protein STY4534 (Putative uncharacterized protein) - none -
fig|6666666.229915.peg.1179 CDS JPZI01000006.1 48530 48748 2 + 219 hypothetical protein - none -
fig|6666666.229915.peg.1180 CDS JPZI01000006.1 48844 49491 1 + 648 FIG00698115: hypothetical protein - none -
fig|6666666.229915.peg.1181 CDS JPZI01000006.1 49817 50101 2 + 285 hypothetical protein - none -
fig|6666666.229915.peg.1182 CDS JPZI01000006.1 50389 50982 1 + 594 Malate/L-lactate dehydrogenases - none -
fig|6666666.229915.peg.1183 CDS JPZI01000006.1 51108 51368 3 + 261 Phage tail assembly Phage tail proteins;
Phage tail proteins 2
fig|6666666.229915.peg.1184 CDS JPZI01000006.1 51390 51503 3 + 114 hypothetical protein - none -
fig|6666666.229915.peg.1185 CDS JPZI01000006.1 51496 51999 1 + 504 putative cytoplasmic protein - none -
fig|6666666.229915.peg.1186 CDS JPZI01000006.1 52257 52886 3 + 630 PilL - none -
fig|6666666.229915.peg.1187 CDS JPZI01000006.1 52897 53652 1 + 756 probable exported protein STY4558 - none -
fig|6666666.229915.peg.1188 CDS JPZI01000006.1 53631 54353 3 + 723 hypothetical protein - none -
fig|6666666.229915.peg.1189 CDS JPZI01000006.1 54715 55218 1 + 504 FIG00696188: hypothetical protein - none -
fig|6666666.229915.peg.1190 CDS JPZI01000006.1 55227 57479 3 + 2253 Type IV secretory pathway, VirD4 components - none -
fig|6666666.229915.peg.1191 CDS JPZI01000006.1 57483 57806 3 + 324 hypothetical protein - none -
fig|6666666.229915.peg.1192 CDS JPZI01000006.1 57994 58500 1 + 507 putative membrane protein - none -
fig|6666666.229915.peg.1193 CDS JPZI01000006.1 58469 58591 2 + 123 hypothetical protein - none -
fig|6666666.229915.peg.1194 CDS JPZI01000006.1 58757 58981 2 + 225 hypothetical protein - none -
fig|6666666.229915.peg.1195 CDS JPZI01000006.1 58981 59223 1 + 243 hypothetical protein - none -
fig|6666666.229915.peg.1196 CDS JPZI01000006.1 59242 59607 1 + 366 hypothetical protein - none -
fig|6666666.229915.peg.1197 CDS JPZI01000006.1 60009 60650 3 + 642 Possible exported protein - none -
fig|6666666.229915.peg.1198 CDS JPZI01000006.1 60724 61560 1 + 837 hypothetical protein - none -
fig|6666666.229915.peg.1199 CDS JPZI01000006.1 61557 63029 3 + 1473 putative exported protein - none -
fig|6666666.229915.peg.1200 CDS JPZI01000006.1 63047 63448 2 + 402 putative lipoprotein - none -
fig|6666666.229915.peg.1201 CDS JPZI01000006.1 63461 66289 2 + 2829 Type IV secretory pathway, VirB4 components - none -
fig|6666666.229915.peg.1202 CDS JPZI01000006.1 66286 66735 1 + 450 hypothetical protein - none -
fig|6666666.229915.peg.1203 CDS JPZI01000006.1 66741 67076 3 + 336 hypothetical protein - none -
fig|6666666.229915.peg.1204 CDS JPZI01000006.1 67083 68579 3 + 1497 putative membrane protein - none -
fig|6666666.229915.peg.1205 CDS JPZI01000006.1 69358 69014 -1 - 345 Programmed cell death toxin MazF - none -
fig|6666666.229915.peg.1206 CDS JPZI01000006.1 69846 70205 3 + 360 hypothetical protein - none -
fig|6666666.229915.peg.1207 CDS JPZI01000006.1 70202 71146 2 + 945 FIG00696751: hypothetical protein - none -
fig|6666666.229915.peg.1208 CDS JPZI01000006.1 71152 73116 1 + 1965 Tfp pilus assembly protein, pilus retraction ATPase PilT - none -
fig|6666666.229915.peg.1209 CDS JPZI01000006.1 73582 73466 -1 - 117 hypothetical protein - none -
fig|6666666.229915.peg.1210 CDS JPZI01000006.1 74732 73938 -2 - 795 hypothetical protein - none -
fig|6666666.229915.peg.1211 CDS JPZI01000006.1 75755 76588 2 + 834 hypothetical protein - none -
fig|6666666.229915.peg.1212 CDS JPZI01000006.1 77548 77006 -1 - 543 Cytolethal distending toxin subunit C Cytolethal distending toxin of Campylobacter jejuni;
Cytolethal distending toxins
fig|6666666.229915.peg.1213 CDS JPZI01000006.1 78410 77559 -2 - 852 Cytolethal distending toxin subunit B Cytolethal distending toxin of Campylobacter jejuni;
Cytolethal distending toxins
fig|6666666.229915.peg.1214 CDS JPZI01000006.1 79093 78425 -1 - 669 Cytolethal distending toxin subunit A Cytolethal distending toxin of Campylobacter jejuni;
Cytolethal distending toxins
fig|6666666.229915.peg.1215 CDS JPZI01000006.1 79855 79676 -1 - 180 hypothetical protein - none -
fig|6666666.229915.peg.1216 CDS JPZI01000006.1 80285 82177 2 + 1893 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes - none -
fig|6666666.229915.peg.1217 CDS JPZI01000006.1 82143 83099 3 + 957 Integrase - none -
fig|6666666.229915.peg.1218 CDS JPZI01000006.1 84974 84276 -2 - 699 NAD-dependent protein deacetylase of SIR2 family Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229915.peg.1219 CDS JPZI01000006.1 85637 84990 -2 - 648 Glutaredoxin 2 Glutaredoxins;
Glutathione: Redox cycle
fig|6666666.229915.peg.1220 CDS JPZI01000006.1 87240 85765 -3 - 1476 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) Bacterial Cell Division;
CBSS-354.1.peg.2917;
RNA processing and degradation, bacterial
fig|6666666.229915.peg.1221 CDS JPZI01000006.1 87381 88901 3 + 1521 Proline/sodium symporter PutP (TC 2.A.21.2.1) @ Propionate/sodium symporter - none -
fig|6666666.229915.peg.1222 CDS JPZI01000006.1 88915 89880 1 + 966 tRNA (5-methoxyuridine) 34 synthase tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229915.peg.1223 CDS JPZI01000006.1 89968 91266 1 + 1299 Adenylosuccinate synthetase (EC 6.3.4.4) Purine conversions
fig|6666666.229915.peg.1224 CDS JPZI01000006.1 91621 91331 -1 - 291 hypothetical protein - none -
fig|6666666.229915.peg.1225 CDS JPZI01000006.1 92627 91644 -2 - 984 DnaJ-class molecular chaperone CbpA Protein chaperones
fig|6666666.229915.peg.1226 CDS JPZI01000006.1 92908 94449 1 + 1542 GTP-binding protein EngA CBSS-290633.1.peg.1906;
CBSS-498211.3.peg.1415;
Universal GTPases
fig|6666666.229915.peg.1227 CDS JPZI01000006.1 95715 94519 -3 - 1197 Sugar efflux transporter SotB - none -
fig|6666666.229915.peg.1228 CDS JPZI01000006.1 96919 95717 -1 - 1203 FIG00696476: hypothetical protein - none -
fig|6666666.229915.peg.1229 CDS JPZI01000006.1 97504 96920 -1 - 585 Deoxycytidine triphosphate deaminase (EC 3.5.4.13) pyrimidine conversions
fig|6666666.229915.peg.1230 CDS JPZI01000006.1 98164 97514 -1 - 651 Uridine kinase (EC 2.7.1.48) [C1] pyrimidine conversions
fig|6666666.229915.peg.1231 CDS JPZI01000006.1 98473 99513 1 + 1041 Ferric iron ABC transporter, iron-binding protein Iron acquisition in Streptococcus
fig|6666666.229915.peg.1232 CDS JPZI01000006.1 99966 100718 3 + 753 Ferric iron ABC transporter, iron-binding protein Iron acquisition in Streptococcus
fig|6666666.229915.peg.1233 CDS JPZI01000006.1 100745 102802 2 + 2058 Ferric iron ABC transporter, permease protein Iron acquisition in Streptococcus
fig|6666666.229915.peg.1234 CDS JPZI01000006.1 102818 103864 2 + 1047 Fe(3+) ions import ATP-binding protein fbpC (EC 3.6.3.30) - none -
fig|6666666.229915.peg.1235 CDS JPZI01000006.1 103920 104039 3 + 120 hypothetical protein - none -
fig|6666666.229915.peg.1236 CDS JPZI01000006.1 104246 106357 2 + 2112 unknown - none -
fig|6666666.229915.peg.1237 CDS JPZI01000006.1 106634 106798 2 + 165 Mobile element protein - none -
fig|6666666.229915.peg.1238 CDS JPZI01000006.1 106819 107127 1 + 309 Mobile element protein - none -
fig|6666666.229915.peg.1239 CDS JPZI01000006.1 107082 107609 3 + 528 Mobile element protein - none -
fig|6666666.229915.peg.1240 CDS JPZI01000006.1 108466 107675 -1 - 792 Inositol-1-monophosphatase (EC 3.1.3.25) - none -
fig|6666666.229915.peg.1241 CDS JPZI01000006.1 108626 109366 2 + 741 tRNA:Cm32/Um32 methyltransferase RNA methylation;
tRNA modification Bacteria
fig|6666666.229915.peg.1242 CDS JPZI01000006.1 109428 109901 3 + 474 Iron-sulfur cluster regulator IscR Alanine biosynthesis;
Rrf2 family transcriptional regulators
fig|6666666.229915.peg.1243 CDS JPZI01000006.1 109955 111169 2 + 1215 Cysteine desulfurase (EC 2.8.1.7), IscS subfamily Alanine biosynthesis;
Thiamin biosynthesis;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.229915.peg.1244 CDS JPZI01000006.1 111229 111612 1 + 384 Iron-sulfur cluster assembly scaffold protein IscU Alanine biosynthesis;
tRNA modification Bacteria
fig|6666666.229915.peg.1245 CDS JPZI01000006.1 111755 112078 2 + 324 Iron binding protein IscA for iron-sulfur cluster assembly Alanine biosynthesis;
tRNA modification Bacteria
fig|6666666.229915.peg.1246 CDS JPZI01000006.1 112090 112611 1 + 522 Chaperone protein HscB Protein chaperones;
tRNA modification Bacteria
fig|6666666.229915.peg.1247 CDS JPZI01000006.1 112632 114491 3 + 1860 Chaperone protein HscA Alanine biosynthesis;
Protein chaperones;
tRNA modification Bacteria
fig|6666666.229915.peg.1248 CDS JPZI01000006.1 114503 114844 2 + 342 Ferredoxin, 2Fe-2S Alanine biosynthesis;
Soluble cytochromes and functionally related electron carriers;
tRNA modification Bacteria
fig|6666666.229915.peg.1249 CDS JPZI01000006.1 114844 115038 1 + 195 Believed to be involved in assembly of Fe-S clusters tRNA modification Bacteria
fig|6666666.229915.peg.1250 CDS JPZI01000006.1 115123 115482 1 + 360 Mobile element protein - none -
fig|6666666.229915.peg.1251 CDS JPZI01000006.1 115503 116300 3 + 798 Mobile element protein - none -
fig|6666666.229915.peg.1252 CDS JPZI01000006.1 118508 116445 -2 - 2064 Methionyl-tRNA synthetase (EC 6.1.1.10) Scaffold proteins for [4Fe-4S] cluster assembly (MRP family);
tRNA aminoacylation, Met
fig|6666666.229915.peg.1253 CDS JPZI01000006.1 118681 119793 1 + 1113 Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like Scaffold proteins for [4Fe-4S] cluster assembly (MRP family)
fig|6666666.229915.peg.1254 CDS JPZI01000006.1 119890 119771 -1 - 120 hypothetical protein - none -
fig|6666666.229915.peg.1255 CDS JPZI01000006.1 121028 119883 -2 - 1146 Beta-hexosaminidase (EC 3.2.1.52) Chitin and N-acetylglucosamine utilization
fig|6666666.229915.peg.1256 CDS JPZI01000006.1 121587 121162 -3 - 426 Nucleoside diphosphate kinase (EC 2.7.4.6) CBSS-498211.3.peg.1415;
Purine conversions;
pyrimidine conversions
fig|6666666.229915.peg.1257 CDS JPZI01000006.1 122897 121599 -2 - 1299 Peptidase B (EC 3.4.11.23) Aminopeptidases (EC 3.4.11.-)
fig|6666666.229915.peg.1258 CDS JPZI01000006.1 122970 123104 3 + 135 hypothetical protein - none -
fig|6666666.229915.peg.1259 CDS JPZI01000006.1 123122 123340 2 + 219 Translation initiation factor 1 Translation initiation factors bacterial
fig|6666666.229915.peg.1260 CDS JPZI01000006.1 124943 123402 -2 - 1542 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE Copper homeostasis: copper tolerance;
Lipoprotein Biosynthesis;
tRNA-methylthiotransferase containing cluster;
tRNA-methylthiotransferase containing cluster
fig|6666666.229915.peg.1261 CDS JPZI01000006.1 126227 125331 -2 - 897 Magnesium and cobalt efflux protein CorC CBSS-56780.10.peg.1536;
Copper homeostasis: copper tolerance;
Glycyl-tRNA synthetase containing cluster;
Magnesium transport;
tRNA-methylthiotransferase containing cluster
fig|6666666.229915.peg.1262 CDS JPZI01000006.1 126307 126435 1 + 129 hypothetical protein - none -
fig|6666666.229915.peg.1263 CDS JPZI01000006.1 126474 127469 3 + 996 [Citrate [pro-3S]-lyase] ligase (EC 6.2.1.22) Citrate Metabolism, Transport, and Regulation
fig|6666666.229915.peg.1264 CDS JPZI01000006.1 127523 127882 2 + 360 Mobile element protein - none -
fig|6666666.229915.peg.1265 CDS JPZI01000006.1 127903 128700 1 + 798 Mobile element protein - none -
fig|6666666.229915.peg.1266 CDS JPZI01000006.1 128872 129159 1 + 288 Citrate lyase gamma chain, acyl carrier protein (EC 4.1.3.6) Citrate Metabolism, Transport, and Regulation;
TCA Cycle
fig|6666666.229915.peg.1267 CDS JPZI01000006.1 129156 130031 3 + 876 Citrate lyase beta chain (EC 4.1.3.6) Citrate Metabolism, Transport, and Regulation
fig|6666666.229915.peg.1268 CDS JPZI01000006.1 130046 131548 2 + 1503 Citrate lyase alpha chain (EC 4.1.3.6) Citrate Metabolism, Transport, and Regulation
fig|6666666.229915.peg.1269 CDS JPZI01000006.1 132025 133437 1 + 1413 2-(5@1@1-triphosphoribosyl)-3@1-dephosphocoenzyme-A synthase (EC 2.7.8.25) Citrate Metabolism, Transport, and Regulation
fig|6666666.229915.peg.1270 CDS JPZI01000006.1 133424 134857 2 + 1434 2-oxoglutarate/malate translocator - none -
fig|6666666.229915.peg.1271 CDS JPZI01000006.1 135135 136634 3 + 1500 Putative ATP /GTP binding protein - none -
fig|6666666.229915.peg.1272 CDS JPZI01000006.1 137931 136897 -3 - 1035 Aldose 1-epimerase (EC 5.1.3.3) Lactose and Galactose Uptake and Utilization;
Maltose and Maltodextrin Utilization
fig|6666666.229915.peg.1273 CDS JPZI01000006.1 139079 137925 -2 - 1155 Galactokinase (EC 2.7.1.6) Lactose and Galactose Uptake and Utilization
fig|6666666.229915.peg.1274 CDS JPZI01000006.1 140264 139221 -2 - 1044 Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10) Lactose and Galactose Uptake and Utilization
fig|6666666.229915.peg.1275 CDS JPZI01000006.1 140517 141530 3 + 1014 Galactose operon repressor, GalR-LacI family of transcriptional regulators Lactose and Galactose Uptake and Utilization
fig|6666666.229915.peg.1276 CDS JPZI01000006.1 141744 142736 3 + 993 Galactose/methyl galactoside ABC transport system, D-galactose-binding periplasmic protein MglB (TC 3.A.1.2.3) Bacterial Chemotaxis;
Lactose and Galactose Uptake and Utilization
fig|6666666.229915.peg.1277 CDS JPZI01000006.1 142812 144350 3 + 1539 Galactose/methyl galactoside ABC transport system, ATP-binding protein MglA (EC 3.6.3.17) Lactose and Galactose Uptake and Utilization
fig|6666666.229915.peg.1278 CDS JPZI01000006.1 144369 145379 3 + 1011 Galactose/methyl galactoside ABC transport system, permease protein MglC (TC 3.A.1.2.3) Lactose and Galactose Uptake and Utilization
fig|6666666.229915.peg.1279 CDS JPZI01000006.1 147300 145453 -3 - 1848 Aerobic respiration control sensor protein arcB (EC 2.7.3.-) - none -
fig|6666666.229915.peg.1280 CDS JPZI01000006.1 147326 147460 2 + 135 hypothetical protein - none -
fig|6666666.229915.peg.1281 CDS JPZI01000006.1 148661 147441 -2 - 1221 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41) Fatty Acid Biosynthesis FASII
fig|6666666.229915.peg.1282 CDS JPZI01000006.1 148831 150849 1 + 2019 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) CBSS-354.1.peg.876;
RNA methylation;
Riboflavin, FMN and FAD metabolism in plants;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229915.peg.1283 CDS JPZI01000006.1 151042 154119 1 + 3078 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229915.peg.1284 CDS JPZI01000006.1 154809 154231 -3 - 579 Heat shock protein GrpE GroEL GroES;
Heat shock dnaK gene cluster extended;
Protein chaperones
fig|6666666.229915.peg.1285 CDS JPZI01000006.1 154777 154905 1 + 129 hypothetical protein - none -
fig|6666666.229915.peg.1286 CDS JPZI01000006.1 154950 155867 3 + 918 NAD kinase (EC 2.7.1.23) NAD and NADP cofactor biosynthesis global
fig|6666666.229915.peg.1287 CDS JPZI01000006.1 155941 157620 1 + 1680 DNA repair protein RecN DNA repair, bacterial
fig|6666666.229915.peg.1288 CDS JPZI01000006.1 158330 157683 -2 - 648 Outer membrane protein W precursor - none -
fig|6666666.229915.peg.1289 CDS JPZI01000006.1 158603 159361 2 + 759 Membrane protein involved in the export of O-antigen and teichoic acid - none -
fig|6666666.229915.peg.1290 CDS JPZI01000006.1 159367 159918 1 + 552 Intracellular septation protein IspA CBSS-211586.9.peg.2729;
Intracellular septation in Enterobacteria
fig|6666666.229915.peg.1291 CDS JPZI01000006.1 159922 160392 1 + 471 Acyl-CoA thioesterase YciA, involved in membrane biogenesis CBSS-211586.9.peg.2729;
Intracellular septation in Enterobacteria
fig|6666666.229915.peg.1292 CDS JPZI01000006.1 160395 160691 3 + 297 YciL protein Broadly distributed proteins not in subsystems;
CBSS-211586.9.peg.2729
fig|6666666.229915.peg.1293 CDS JPZI01000006.1 161217 163439 3 + 2223 Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) Murein Hydrolases
fig|6666666.229915.peg.1294 CDS JPZI01000006.1 163472 163780 2 + 309 Transcriptional repressor protein TrpR Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate);
Tryptophan synthesis
fig|6666666.229915.peg.1295 CDS JPZI01000006.1 163758 164531 3 + 774 Monofunctional biosynthetic peptidoglycan transglycosylase (EC 2.4.2.-) Peptidoglycan Biosynthesis
fig|6666666.229915.peg.1296 CDS JPZI01000006.1 164704 165867 1 + 1164 Na+/H+ antiporter NhaA type NhaA, NhaD and Sodium-dependent phosphate transporters
fig|6666666.229915.peg.1297 CDS JPZI01000006.1 166433 166179 -2 - 255 hypothetical protein - none -
fig|6666666.229915.peg.1298 CDS JPZI01000006.1 166958 166620 -2 - 339 Preprotein translocase subunit SecG (TC 3.A.5.1.1) CBSS-331978.3.peg.2915;
Murein hydrolase regulation and cell death
fig|6666666.229915.peg.1299 CDS JPZI01000006.1 169068 167131 -3 - 1938 DNA topoisomerase III (EC 5.99.1.2) DNA processing cluster;
DNA topoisomerases, Type I, ATP-independent
fig|6666666.229915.peg.1300 CDS JPZI01000006.1 169701 169099 -3 - 603 Recombination protein RecR DNA processing cluster;
DNA repair, bacterial RecFOR pathway
fig|6666666.229915.peg.1301 CDS JPZI01000006.1 170301 169786 -3 - 516 FIG000557: hypothetical protein co-occurring with RecR DNA processing cluster
fig|6666666.229915.peg.1302 CDS JPZI01000006.1 170300 171370 2 + 1071 Phosphoesterase (EC 3.1.-.-) - none -
fig|6666666.229915.peg.1303 CDS JPZI01000006.1 171750 171550 -3 - 201 hypothetical protein - none -
fig|6666666.229915.peg.1304 CDS JPZI01000006.1 172714 171743 -1 - 972 Translation elongation factor P Lys34:lysine transferase Translation elongation factor P lysylation
fig|6666666.229915.peg.1305 CDS JPZI01000006.1 173024 174838 2 + 1815 Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) Succinate dehydrogenase;
TCA Cycle
fig|6666666.229915.peg.1306 CDS JPZI01000006.1 174843 175613 3 + 771 Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) 5-FCL-like protein;
Succinate dehydrogenase;
TCA Cycle
fig|6666666.229915.peg.1307 CDS JPZI01000006.1 175625 176017 2 + 393 Fumarate reductase subunit C Succinate dehydrogenase
fig|6666666.229915.peg.1308 CDS JPZI01000006.1 176027 176371 2 + 345 Fumarate reductase subunit D Succinate dehydrogenase
fig|6666666.229915.peg.1309 CDS JPZI01000006.1 178630 176468 -1 - 2163 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) RNA methylation
fig|6666666.229915.peg.1310 CDS JPZI01000006.1 178817 178665 -2 - 153 hypothetical protein - none -
fig|6666666.229915.peg.1311 CDS JPZI01000006.1 178806 179165 3 + 360 Mobile element protein - none -
fig|6666666.229915.peg.1312 CDS JPZI01000006.1 179186 179983 2 + 798 Mobile element protein - none -
fig|6666666.229915.peg.1313 CDS JPZI01000006.1 180322 181350 1 + 1029 Alcohol dehydrogenase (EC 1.1.1.1) 5-FCL-like protein;
Fermentations: Mixed acid;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229915.peg.1314 CDS JPZI01000006.1 182649 181435 -3 - 1215 ATPase component BioM of energizing module of biotin ECF transporter ECF class transporters
fig|6666666.229915.peg.1315 CDS JPZI01000006.1 183472 182774 -1 - 699 Queuosine Biosynthesis QueC ATPase Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229915.peg.1316 CDS JPZI01000006.1 183659 183492 -2 - 168 hypothetical protein - none -
fig|6666666.229915.peg.1317 CDS JPZI01000006.1 183810 184274 3 + 465 FIG00710847: hypothetical protein - none -
fig|6666666.229915.peg.1318 CDS JPZI01000006.1 184247 185074 2 + 828 FIG00711691: hypothetical protein - none -
fig|6666666.229915.peg.1319 CDS JPZI01000006.1 185487 185362 -3 - 126 hypothetical protein - none -
fig|6666666.229915.peg.1320 CDS JPZI01000006.1 186411 185587 -3 - 825 3@1,5@1-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17) cAMP signaling in bacteria
fig|6666666.229915.peg.1321 CDS JPZI01000006.1 187085 186462 -2 - 624 ADP-ribose pyrophosphatase (EC 3.6.1.13) CBSS-216591.1.peg.168;
NAD and NADP cofactor biosynthesis global;
Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229915.peg.1322 CDS JPZI01000006.1 188007 187327 -3 - 681 FIG009095: D,D-carboxypeptidase family protein CBSS-584.1.peg.1352
fig|6666666.229915.peg.1323 CDS JPZI01000006.1 189142 188009 -1 - 1134 N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18) A Glutathione-dependent Thiol Reductase Associated with a Step in Lysine Biosynthesis;
CBSS-584.1.peg.1352;
Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229915.peg.1324 CDS JPZI01000006.1 189514 189170 -1 - 345 FIG138056: a glutathione-dependent thiol reductase A Glutathione-dependent Thiol Reductase Associated with a Step in Lysine Biosynthesis;
CBSS-584.1.peg.1352
fig|6666666.229915.peg.1325 CDS JPZI01000006.1 191462 189582 -2 - 1881 Chaperone protein HtpG Protein chaperones
fig|6666666.229915.peg.1326 CDS JPZI01000006.1 192759 191596 -3 - 1164 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) Chorismate Synthesis;
Chorismate Synthesis;
Phenylalanine and Tyrosine Branches from Chorismate;
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229915.peg.1327 CDS JPZI01000006.1 193878 192961 -3 - 918 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC 3.5.1.108) KDO2-Lipid A biosynthesis
fig|6666666.229915.peg.1328 CDS JPZI01000006.1 195193 193916 -1 - 1278 Cell division protein FtsZ (EC 3.4.24.-) Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ;
cell division core of larger cluster
fig|6666666.229915.peg.1329 CDS JPZI01000006.1 196557 195277 -3 - 1281 Cell division protein FtsA Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ;
cell division core of larger cluster
fig|6666666.229915.peg.1330 CDS JPZI01000006.1 197349 196582 -3 - 768 Cell division protein FtsQ Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ;
cell division core of larger cluster
fig|6666666.229915.peg.1331 CDS JPZI01000006.1 198275 197346 -2 - 930 D-alanine--D-alanine ligase (EC 6.3.2.4) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo;
cell division cluster containing FtsQ
fig|6666666.229915.peg.1332 CDS JPZI01000006.1 199718 198288 -2 - 1431 UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo;
cell division cluster containing FtsQ
fig|6666666.229915.peg.1333 CDS JPZI01000006.1 200853 199789 -3 - 1065 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) Peptidoglycan Biosynthesis;
cell division core of larger cluster
fig|6666666.229915.peg.1334 CDS JPZI01000006.1 202084 200894 -1 - 1191 Cell division protein FtsW Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ
fig|6666666.229915.peg.1335 CDS JPZI01000006.1 203403 202099 -3 - 1305 UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC 6.3.2.9) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo
fig|6666666.229915.peg.1336 CDS JPZI01000006.1 204515 203430 -2 - 1086 Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC 2.7.8.13) Peptidoglycan Biosynthesis
fig|6666666.229915.peg.1337 CDS JPZI01000006.1 205888 204509 -1 - 1380 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase (EC 6.3.2.10) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo
fig|6666666.229915.peg.1338 CDS JPZI01000006.1 207362 205896 -2 - 1467 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo
fig|6666666.229915.peg.1339 CDS JPZI01000006.1 209203 207380 -1 - 1824 Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129) 16S rRNA modification within P site of ribosome;
Bacterial Cell Division;
Bacterial Cytoskeleton;
CBSS-83331.1.peg.3039;
Peptidoglycan Biosynthesis
fig|6666666.229915.peg.1340 CDS JPZI01000006.1 209388 209221 -3 - 168 Cell division protein FtsL 16S rRNA modification within P site of ribosome;
Bacterial Cell Division;
Bacterial Cytoskeleton;
Stationary phase repair cluster
fig|6666666.229915.peg.1341 CDS JPZI01000006.1 210506 209538 -2 - 969 rRNA small subunit methyltransferase H 16S rRNA modification within P site of ribosome;
Bacterial Cell Division
fig|6666666.229915.peg.1342 CDS JPZI01000006.1 211074 210616 -3 - 459 Cell division protein MraZ 16S rRNA modification within P site of ribosome;
Bacterial Cell Division;
Bacterial Cytoskeleton
fig|6666666.229915.peg.1343 CDS JPZI01000006.1 212935 211337 -1 - 1599 Carbon starvation protein A Carbon Starvation
fig|6666666.229915.peg.1344 CDS JPZI01000006.1 214159 213476 -1 - 684 Arginine ABC transporter, permease protein ArtM Arginine and Ornithine Degradation
fig|6666666.229915.peg.1345 CDS JPZI01000006.1 214824 214162 -3 - 663 Arginine ABC transporter, permease protein ArtQ Arginine and Ornithine Degradation
fig|6666666.229915.peg.1346 CDS JPZI01000006.1 215548 214829 -1 - 720 Arginine ABC transporter, periplasmic arginine-binding protein ArtI Arginine and Ornithine Degradation
fig|6666666.229915.peg.1347 CDS JPZI01000006.1 216302 215568 -2 - 735 Arginine ABC transporter, ATP-binding protein ArtP Arginine and Ornithine Degradation
fig|6666666.229915.peg.1348 CDS JPZI01000006.1 217027 216443 -1 - 585 Phosphoheptose isomerase 1 (EC 5.3.1.-) LOS core oligosaccharide biosynthesis
fig|6666666.229915.peg.1349 CDS JPZI01000006.1 220586 217116 -2 - 3471 Transcription-repair coupling factor Cell division-ribosomal stress proteins cluster;
Transcription factors bacterial;
Transcription repair cluster
fig|6666666.229915.peg.1350 CDS JPZI01000006.1 220889 220716 -2 - 174 hypothetical protein - none -
fig|6666666.229915.peg.1351 CDS JPZI01000006.1 222853 220931 -1 - 1923 Predicted P-loop ATPase fused to an acetyltransferase COG1444 tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229915.peg.1352 CDS JPZI01000006.1 223558 222857 -1 - 702 unknown - none -
fig|6666666.229915.peg.1353 CDS JPZI01000006.1 224190 223726 -3 - 465 Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly CBSS-56780.10.peg.1536;
Glycyl-tRNA synthetase containing cluster;
tRNA-methylthiotransferase containing cluster
fig|6666666.229915.peg.1354 CDS JPZI01000006.1 225411 225737 3 + 327 Type IV prepilin peptidase TadV/CpaA Widespread colonization island
fig|6666666.229915.peg.1355 CDS JPZI01000006.1 225788 226612 2 + 825 Flp pilus assembly protein RcpC/CpaB Widespread colonization island
fig|6666666.229915.peg.1356 CDS JPZI01000006.1 226614 227996 3 + 1383 Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly Widespread colonization island
fig|6666666.229915.peg.1357 CDS JPZI01000006.1 228026 228496 2 + 471 Flp pilus assembly protein RcpB Widespread colonization island
fig|6666666.229915.peg.1358 CDS JPZI01000006.1 228512 229636 2 + 1125 Type II/IV secretion system ATPase TadZ/CpaE, associated with Flp pilus assembly Widespread colonization island
fig|6666666.229915.peg.1359 CDS JPZI01000006.1 229650 230930 3 + 1281 Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily Widespread colonization island
fig|6666666.229915.peg.1360 CDS JPZI01000006.1 230930 231817 2 + 888 Flp pilus assembly protein TadB Widespread colonization island
fig|6666666.229915.peg.1361 CDS JPZI01000006.1 231814 232680 1 + 867 Type II/IV secretion system protein TadC, associated with Flp pilus assembly Widespread colonization island
fig|6666666.229915.peg.1362 CDS JPZI01000006.1 232670 233431 2 + 762 Flp pilus assembly protein TadD, contains TPR repeat Widespread colonization island
fig|6666666.229915.peg.1363 CDS JPZI01000006.1 234169 234669 1 + 501 Flp pilus assembly surface protein TadF, ATP/GTP-binding motif Widespread colonization island
fig|6666666.229915.peg.1364 CDS JPZI01000006.1 234685 236265 1 + 1581 Protein TadG, associated with Flp pilus assembly Widespread colonization island
fig|6666666.229915.peg.1365 CDS JPZI01000006.1 236875 236741 -1 - 135 hypothetical protein - none -
fig|6666666.229915.peg.1366 CDS JPZI01000006.1 237401 237228 -2 - 174 Mobile element protein - none -
fig|6666666.229915.peg.1367 CDS JPZI01000006.1 238058 237603 -2 - 456 Mobile element protein - none -
fig|6666666.229915.peg.1368 CDS JPZI01000006.1 240392 238890 -2 - 1503 Sodium-dependent transporter - none -
fig|6666666.229915.peg.1369 CDS JPZI01000006.1 240673 240545 -1 - 129 hypothetical protein - none -
fig|6666666.229915.peg.1370 CDS JPZI01000006.1 240809 241084 2 + 276 tRNA pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229915.peg.1371 CDS JPZI01000006.1 241086 241802 3 + 717 Mg(2+) transport ATPase protein C Magnesium transport
fig|6666666.229915.peg.1372 CDS JPZI01000006.1 242742 241840 -3 - 903 hypothetical protein - none -
fig|6666666.229915.peg.1373 CDS JPZI01000006.1 244647 242788 -3 - 1860 Selenocysteine-specific translation elongation factor Selenocysteine metabolism
fig|6666666.229915.peg.1374 CDS JPZI01000006.1 246038 244644 -2 - 1395 L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1) Selenocysteine metabolism
fig|6666666.229915.peg.1375 CDS JPZI01000006.1 246157 246041 -1 - 117 hypothetical protein - none -
fig|6666666.229915.peg.1376 CDS JPZI01000006.1 246189 247904 3 + 1716 Prolyl-tRNA synthetase (EC 6.1.1.15), bacterial type tRNA aminoacylation, Pro
fig|6666666.229915.peg.1377 CDS JPZI01000006.1 247971 248300 3 + 330 Ethidium bromide-methyl viologen resistance protein EmrE - none -
fig|6666666.229915.peg.1378 CDS JPZI01000006.1 248340 248594 3 + 255 YgfY COG2938 - none -
fig|6666666.229915.peg.1379 CDS JPZI01000006.1 248727 249302 3 + 576 RNA polymerase sigma factor RpoE Transcription initiation, bacterial sigma factors
fig|6666666.229915.peg.1380 CDS JPZI01000006.1 249341 249925 2 + 585 Sigma factor RpoE negative regulatory protein RseA Periplasmic Stress Response;
Transcription initiation, bacterial sigma factors
fig|6666666.229915.peg.1381 CDS JPZI01000006.1 250007 250963 2 + 957 Sigma factor RpoE negative regulatory protein RseB precursor Periplasmic Stress Response;
Transcription initiation, bacterial sigma factors
fig|6666666.229915.peg.1382 CDS JPZI01000006.1 250973 251410 2 + 438 Sigma factor RpoE regulatory protein RseC Transcription initiation, bacterial sigma factors
fig|6666666.229915.peg.1383 CDS JPZI01000006.1 251491 252003 1 + 513 Molybdopterin-guanine dinucleotide biosynthesis protein MobB Molybdenum cofactor biosynthesis;
ar-431-EC Molybdopterin-guanine dinucleotide biosynthesis
fig|6666666.229915.peg.1384 CDS JPZI01000006.1 252098 252853 2 + 756 Short chain dehydrogenase - none -
fig|6666666.229915.peg.1385 CDS JPZI01000006.1 254394 252934 -3 - 1461 Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3) Dipeptidases (EC 3.4.13.-);
Recycling of Peptidoglycan Amino Acids
fig|6666666.229915.peg.1386 CDS JPZI01000006.1 254516 254980 2 + 465 Xanthine-guanine phosphoribosyltransferase (EC 2.4.2.22) Purine conversions
fig|6666666.229915.peg.1387 CDS JPZI01000006.1 254967 255086 3 + 120 hypothetical protein - none -
fig|6666666.229915.peg.1388 CDS JPZI01000006.1 257505 255073 -3 - 2433 Outer membrane protein Imp, required for envelope biogenesis / Organic solvent tolerance protein precursor Lipopolysaccharide assembly
fig|6666666.229915.peg.1389 CDS JPZI01000006.1 258041 257481 -2 - 561 DNA-3-methyladenine glycosylase (EC 3.2.2.20) CBSS-326442.4.peg.1852;
DNA Repair Base Excision
fig|6666666.229915.peg.1390 CDS JPZI01000006.1 258243 258848 3 + 606 probable integral membrane protein Cj0014c - none -
fig|6666666.229915.peg.1391 CDS JPZI01000006.1 260151 258901 -3 - 1251 Diaminopimelate decarboxylase (EC 4.1.1.20) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229915.peg.1392 CDS JPZI01000006.1 260288 260169 -2 - 120 hypothetical protein - none -
fig|6666666.229915.peg.1393 CDS JPZI01000006.1 260411 260725 2 + 315 Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly Biogenesis of cytochrome c oxidases
fig|6666666.229915.peg.1394 CDS JPZI01000006.1 260722 262611 1 + 1890 ATP-dependent DNA helicase RecQ DNA repair, bacterial RecFOR pathway
fig|6666666.229915.peg.1395 CDS JPZI01000006.1 262708 265128 1 + 2421 DNA gyrase subunit B (EC 5.99.1.3) Cell Division Subsystem including YidCD;
DNA gyrase subunits;
DNA replication cluster 1;
DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.229915.peg.1396 CDS JPZI01000006.1 266137 265184 -1 - 954 Pantothenate kinase (EC 2.7.1.33) Coenzyme A Biosynthesis
fig|6666666.229915.peg.1397 CDS JPZI01000006.1 266831 268015 2 + 1185 Translation elongation factor Tu Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Translation elongation factors bacterial;
Universal GTPases
fig|6666666.229915.peg.1398 CDS JPZI01000006.1 269026 268085 -1 - 942 Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229915.peg.1399 CDS JPZI01000006.1 269189 270676 2 + 1488 Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229915.peg.1400 CDS JPZI01000006.1 270692 271720 2 + 1029 Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229915.peg.1401 CDS JPZI01000006.1 271726 273183 1 + 1458 L-xylulose/3-keto-L-gulonate kinase (EC 2.7.1.-) L-ascorbate utilization (and related gene clusters)
fig|6666666.229915.peg.1402 CDS JPZI01000006.1 275549 273234 -2 - 2316 Transcription accessory protein (S1 RNA-binding domain) CBSS-243265.1.peg.198;
Cell division-ribosomal stress proteins cluster;
Transcription factors bacterial
fig|6666666.229915.peg.1403 CDS JPZI01000006.1 276653 275760 -2 - 894 RuBisCO operon transcriptional regulator CO2 uptake, carboxysome
fig|6666666.229915.peg.1404 CDS JPZI01000006.1 276763 278232 1 + 1470 Sodium-dependent transporter - none -
fig|6666666.229915.peg.1405 CDS JPZI01000006.1 278244 278843 3 + 600 Phosphoglycerate mutase (EC 5.4.2.1) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis;
Phosphoglycerate mutase protein family
fig|6666666.229915.peg.1406 CDS JPZI01000006.1 279168 278980 -3 - 189 hypothetical protein - none -
fig|6666666.229915.peg.1407 CDS JPZI01000006.1 279453 279169 -3 - 285 Transcription accessory protein (S1 RNA-binding domain) CBSS-243265.1.peg.198;
Cell division-ribosomal stress proteins cluster;
Transcription factors bacterial
fig|6666666.229915.peg.1408 CDS JPZI01000006.1 279583 280065 1 + 483 Transcription elongation factor GreB CBSS-243265.1.peg.198;
Transcription factors bacterial
fig|6666666.229915.peg.1409 CDS JPZI01000006.1 280088 280315 2 + 228 hypothetical protein - none -
fig|6666666.229915.peg.1410 CDS JPZI01000006.1 280941 280354 -3 - 588 DNA-directed RNA polymerase specialized sigma subunit, sigma24-like - none -
fig|6666666.229915.peg.1411 CDS JPZI01000006.1 281420 281127 -2 - 294 hypothetical protein - none -
fig|6666666.229915.peg.1412 CDS JPZI01000006.1 281682 282419 3 + 738 Putative preQ0 transporter Queuosine-Archaeosine Biosynthesis
fig|6666666.229915.peg.1413 CDS JPZI01000006.1 283741 282461 -1 - 1281 Uncharacterized protein EC-HemY, likely associated with heme metabolism based on gene clustering with hemC, hemD in Proteobacteria (unrelated to HemY-type PPO in GramPositives) - none -
fig|6666666.229915.peg.1414 CDS JPZI01000006.1 285139 283754 -1 - 1386 Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) Heme and Siroheme Biosynthesis
fig|6666666.229915.peg.1415 CDS JPZI01000006.1 285915 285169 -3 - 747 Uroporphyrinogen-III synthase (EC 4.2.1.75) Heme and Siroheme Biosynthesis
fig|6666666.229915.peg.1416 CDS JPZI01000006.1 286854 285928 -3 - 927 Porphobilinogen deaminase (EC 2.5.1.61) Heme and Siroheme Biosynthesis
fig|6666666.229915.peg.1417 CDS JPZI01000006.1 287010 289511 3 + 2502 Adenylate cyclase (EC 4.6.1.1) cAMP signaling in bacteria
fig|6666666.229915.peg.1418 CDS JPZI01000006.1 289521 290150 3 + 630 Nitrate/nitrite response regulator protein - none -
fig|6666666.229915.peg.1419 CDS JPZI01000006.1 290221 292080 1 + 1860 Uncharacterized protein YtfM precursor Cluster Ytf and putative sugar transporter;
Putative sugar ABC transporter (ytf cluster)
fig|6666666.229915.peg.1420 CDS JPZI01000006.1 292108 295980 1 + 3873 Uncharacterized protein YtfN Cluster Ytf and putative sugar transporter;
Putative sugar ABC transporter (ytf cluster)
fig|6666666.229915.peg.1421 CDS JPZI01000006.1 295983 297530 3 + 1548 Exopolyphosphatase (EC 3.6.1.11) Phosphate metabolism;
Polyphosphate
fig|6666666.229915.peg.1422 CDS JPZI01000006.1 299210 297594 -2 - 1617 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) CBSS-584.1.peg.3382;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229915.peg.1423 CDS JPZI01000006.1 299470 300114 1 + 645 converved hypothetical protein - none -
fig|6666666.229915.peg.1424 CDS JPZI01000006.1 300253 301038 1 + 786 NADH pyrophosphatase (EC 3.6.1.22) DNA uptake cluster;
Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229915.peg.1425 CDS JPZI01000006.1 301051 302115 1 + 1065 Uroporphyrinogen III decarboxylase (EC 4.1.1.37) Heme and Siroheme Biosynthesis
fig|6666666.229915.peg.1426 CDS JPZI01000006.1 302130 302723 3 + 594 FIG01200173: hypothetical protein - none -
fig|6666666.229915.peg.1427 CDS JPZI01000006.1 302890 303162 1 + 273 DNA-binding protein HU-alpha DNA structural proteins, bacterial;
DNA uptake cluster
fig|6666666.229915.peg.1428 CDS JPZI01000006.1 303310 304086 1 + 777 Transcriptional regulator of glmS gene, DeoR family - none -
fig|6666666.229915.peg.1429 CDS JPZI01000006.1 304141 305973 1 + 1833 Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) Sialic Acid Metabolism;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229915.peg.1430 CDS JPZI01000006.1 306984 306127 -3 - 858 FIG01220323: hypothetical protein - none -
fig|6666666.229915.peg.1431 CDS JPZI01000006.1 307187 306936 -2 - 252 FIG01220323: hypothetical protein - none -
fig|6666666.229915.peg.1432 CDS JPZI01000006.1 307291 308181 1 + 891 Transcriptional regulator, LysR family - none -
fig|6666666.229915.peg.1433 CDS JPZI01000006.1 309418 308438 -1 - 981 Aldo-keto reductase - none -
fig|6666666.229915.peg.1434 CDS JPZI01000006.1 310606 309470 -1 - 1137 Aldo-keto reductase - none -
fig|6666666.229915.peg.1435 CDS JPZI01000006.1 311251 310967 -1 - 285 FIG045511: hypothetical antitoxin (to FIG022160: hypothetical toxin) - none -
fig|6666666.229915.peg.1436 CDS JPZI01000006.1 311570 311244 -2 - 327 FIG022160: hypothetical toxin - none -
fig|6666666.229915.peg.1437 CDS JPZI01000006.1 312623 311778 -2 - 846 oxidoreductase of aldo/keto reductase family, subgroup 1 - none -
fig|6666666.229915.peg.1438 CDS JPZI01000006.1 312924 313667 3 + 744 Transcriptional regulator, LysR family - none -
fig|6666666.229915.peg.1439 CDS JPZI01000006.1 313672 313815 1 + 144 Transcriptional regulator, LysR family - none -
fig|6666666.229915.peg.1440 CDS JPZI01000006.1 314719 313904 -1 - 816 putative tetracenomycin polyketide synthesis O-methyltransferase - none -
fig|6666666.229915.peg.1441 CDS JPZI01000006.1 316481 314982 -2 - 1500 ATPase component BioM of energizing module of biotin ECF transporter ECF class transporters
fig|6666666.229915.peg.1442 CDS JPZI01000006.1 316607 317275 2 + 669 Uncharacterized protein conserved in bacteria - none -
fig|6666666.229915.peg.1443 CDS JPZI01000006.1 317278 317751 1 + 474 UPF0225 protein YchJ Broadly distributed proteins not in subsystems
fig|6666666.229915.peg.1444 CDS JPZI01000006.1 317748 318578 3 + 831 Ribonuclease BN (EC 3.1.-.-) - none -
fig|6666666.229915.peg.1445 CDS JPZI01000006.1 318575 319009 2 + 435 Ribonuclease BN (EC 3.1.-.-) - none -
fig|6666666.229915.peg.1446 CDS JPZI01000006.1 319175 320383 2 + 1209 Sodium/glutamate symport protein - none -
fig|6666666.229915.peg.1447 CDS JPZI01000006.1 321831 320443 -3 - 1389 Copper sensory histidine kinase CpxA Orphan regulatory proteins
fig|6666666.229915.peg.1448 CDS JPZI01000006.1 322571 321876 -2 - 696 Copper-sensing two-component system response regulator CpxR Orphan regulatory proteins
fig|6666666.229915.peg.1449 CDS JPZI01000006.1 323024 322611 -2 - 414 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex Lipopolysaccharide assembly
fig|6666666.229915.peg.1450 CDS JPZI01000006.1 324115 323090 -1 - 1026 Nucleoid-associated protein NdpA CBSS-211586.1.peg.1979
fig|6666666.229915.peg.1451 CDS JPZI01000006.1 324209 324466 2 + 258 FIG002927: hypothetical protein CBSS-211586.1.peg.1979
fig|6666666.229915.peg.1452 CDS JPZI01000006.1 324471 326210 3 + 1740 FIG001881: hydrolase of alkaline phosphatase superfamily CBSS-211586.1.peg.1979
fig|6666666.229915.peg.1453 CDS JPZI01000006.1 326469 327458 3 + 990 Cytosine deaminase (EC 3.5.4.1) CBSS-326442.4.peg.1852;
Creatine and Creatinine Degradation;
pyrimidine conversions
fig|6666666.229915.peg.1454 CDS JPZI01000006.1 328421 327555 -2 - 867 Nucleoside triphosphate pyrophosphohydrolase MazG (EC 3.6.1.8) Nucleoside triphosphate pyrophosphohydrolase MazG
fig|6666666.229915.peg.1455 CDS JPZI01000006.1 328531 328956 1 + 426 Universal stress protein A Universal stress protein family
fig|6666666.229915.peg.1456 CDS JPZI01000006.1 329237 331780 2 + 2544 Alanyl-tRNA synthetase (EC 6.1.1.7) Cluster containing Alanyl-tRNA synthetase;
tRNA aminoacylation, Ala
fig|6666666.229915.peg.1457 CDS JPZI01000006.1 331903 332085 1 + 183 Carbon storage regulator Carbon Starvation;
Carbon storage regulator
fig|6666666.229915.peg.1458 CDS JPZI01000006.1 332117 333481 2 + 1365 Phosphomannomutase (EC 5.4.2.8) Mannose Metabolism
fig|6666666.229915.peg.1459 CDS JPZI01000006.1 333557 334444 2 + 888 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) - none -
fig|6666666.229915.peg.1460 CDS JPZI01000006.1 334598 334915 2 + 318 Methionine repressor MetJ Methionine Biosynthesis
fig|6666666.229915.peg.1461 CDS JPZI01000006.1 334989 335723 3 + 735 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) Cluster containing Glutathione synthetase;
Heat shock dnaK gene cluster extended;
RNA methylation
fig|6666666.229915.peg.1462 CDS JPZI01000006.1 335741 336298 2 + 558 UPF0301 protein YqgE Cluster containing Glutathione synthetase
fig|6666666.229915.peg.1463 CDS JPZI01000006.1 336298 336717 1 + 420 Putative Holliday junction resolvase YggF Cluster containing Alanyl-tRNA synthetase;
Cluster containing Glutathione synthetase
fig|6666666.229915.peg.1464 CDS JPZI01000006.1 338124 336814 -3 - 1311 Enolase (EC 4.2.1.11) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis
fig|6666666.229915.peg.1465 CDS JPZI01000006.1 338309 338193 -2 - 117 hypothetical protein - none -
fig|6666666.229915.peg.1466 CDS JPZI01000006.1 338541 338362 -3 - 180 hypothetical protein - none -
fig|6666666.229915.peg.1467 CDS JPZI01000006.1 339920 338769 -2 - 1152 tRNA-specific 2-thiouridylase MnmA RNA methylation
fig|6666666.229915.peg.1468 CDS JPZI01000006.1 340439 340182 -2 - 258 Probable exported or periplasmic protein in ApbE locus Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229915.peg.1469 CDS JPZI01000006.1 341606 340518 -2 - 1089 Thiamin biosynthesis lipoprotein ApbE - none -
fig|6666666.229915.peg.1470 CDS JPZI01000006.1 342992 341757 -2 - 1236 Na(+)-translocating NADH-quinone reductase subunit F (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229915.peg.1471 CDS JPZI01000006.1 343600 343004 -1 - 597 Na(+)-translocating NADH-quinone reductase subunit E (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229915.peg.1472 CDS JPZI01000006.1 344233 343604 -1 - 630 Na(+)-translocating NADH-quinone reductase subunit D (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229915.peg.1473 CDS JPZI01000006.1 345018 344233 -3 - 786 Na(+)-translocating NADH-quinone reductase subunit C (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229915.peg.1474 CDS JPZI01000006.1 346246 345011 -1 - 1236 Na(+)-translocating NADH-quinone reductase subunit B (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229915.peg.1475 CDS JPZI01000006.1 347589 346249 -3 - 1341 Na(+)-translocating NADH-quinone reductase subunit A (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229915.peg.1476 CDS JPZI01000006.1 348255 347944 -3 - 312 Cell division protein BolA Bacterial Cell Division;
CBSS-339671.5.peg.589
fig|6666666.229915.peg.1477 CDS JPZI01000006.1 348359 348952 2 + 594 Hypothetical lipoprotein YajG precursor CBSS-339671.5.peg.589
fig|6666666.229915.peg.1478 CDS JPZI01000006.1 350582 349497 -2 - 1086 Membrane-bound lytic murein transglycosylase C precursor (EC 3.2.1.-) Murein Hydrolases
fig|6666666.229915.peg.1479 CDS JPZI01000006.1 350857 350579 -1 - 279 FIG001341: Probable Fe(2+)-trafficking protein YggX Heat shock dnaK gene cluster extended
fig|6666666.229915.peg.1480 CDS JPZI01000006.1 352025 350835 -2 - 1191 A/G-specific adenine glycosylase (EC 3.2.2.-) DNA repair, bacterial
fig|6666666.229915.peg.1481 CDS JPZI01000006.1 352190 352957 2 + 768 tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33) CBSS-83333.1.peg.2911;
RNA methylation;
tRNA modification Bacteria
fig|6666666.229915.peg.1482 CDS JPZI01000006.1 352988 353329 2 + 342 FIG002060: uncharacterized protein YggL CBSS-83333.1.peg.2911
fig|6666666.229915.peg.1483 CDS JPZI01000006.1 353548 354546 1 + 999 Ferric iron ABC transporter, iron-binding protein Iron acquisition in Streptococcus
fig|6666666.229915.peg.1484 CDS JPZI01000006.1 354637 356157 1 + 1521 Ferric iron ABC transporter, permease protein Iron acquisition in Streptococcus
fig|6666666.229915.peg.1485 CDS JPZI01000006.1 356173 357231 1 + 1059 Ferric iron ABC transporter, ATP-binding protein Iron acquisition in Streptococcus
fig|6666666.229915.peg.1486 CDS JPZI01000006.1 358221 357217 -3 - 1005 tRNA-dihydrouridine synthase C (EC 1.-.-.-) Murein hydrolase regulation and cell death;
tRNA modification Bacteria
fig|6666666.229915.peg.1487 CDS JPZI01000006.1 359100 358225 -3 - 876 DnaJ-like protein DjlA - none -
fig|6666666.229915.peg.1488 CDS JPZI01000006.1 359826 359182 -3 - 645 Orotate phosphoribosyltransferase (EC 2.4.2.10) De Novo Pyrimidine Synthesis
fig|6666666.229915.peg.1489 CDS JPZI01000006.1 360552 359836 -3 - 717 Ribonuclease PH (EC 2.7.7.56) Heat shock dnaK gene cluster extended;
tRNA processing
fig|6666666.229915.peg.1490 CDS JPZI01000006.1 360670 361533 1 + 864 Protein YicC CBSS-323097.3.peg.2594
fig|6666666.229915.peg.1491 CDS JPZI01000006.1 361561 362448 1 + 888 Folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress - none -
fig|6666666.229915.peg.1492 CDS JPZI01000006.1 362449 362709 1 + 261 hypothetical protein - none -
fig|6666666.229915.peg.1493 CDS JPZI01000006.1 362861 363583 2 + 723 SSU ribosomal protein S2p (SAe) CBSS-312309.3.peg.1965;
Ribosome SSU bacterial;
Ribosome recycling related cluster
fig|6666666.229915.peg.1494 CDS JPZI01000006.1 363740 364588 2 + 849 Translation elongation factor Ts CBSS-312309.3.peg.1965;
Ribosome recycling related cluster;
Translation elongation factors bacterial
fig|6666666.229915.peg.1495 CDS JPZI01000006.1 365008 365139 1 + 132 hypothetical protein - none -
fig|6666666.229915.peg.1496 CDS JPZI01000006.1 365212 365898 1 + 687 DNA recombination and repair protein RecO CBSS-176299.4.peg.1292;
DNA repair, bacterial RecFOR pathway;
Glycyl-tRNA synthetase containing cluster
fig|6666666.229915.peg.1497 CDS JPZI01000006.1 365900 367216 2 + 1317 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) RNA methylation
fig|6666666.229915.peg.1498 CDS JPZI01000006.1 367226 369457 2 + 2232 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I CBSS-176299.4.peg.1292;
Stringent Response, (p)ppGpp metabolism
fig|6666666.229915.peg.1499 CDS JPZI01000006.1 369483 369839 3 + 357 Diacylglycerol kinase (EC 2.7.1.107) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Riboflavin synthesis cluster
fig|6666666.229915.peg.1500 CDS JPZI01000006.1 369892 370515 1 + 624 Hydrolase, haloacid dehalogenase-like family - none -
fig|6666666.229915.peg.1501 CDS JPZI01000006.1 370894 371037 1 + 144 hypothetical protein - none -
fig|6666666.229915.peg.1502 CDS JPZI01000006.1 371054 371167 2 + 114 Integral membrane protein - none -
fig|6666666.229915.peg.1503 CDS JPZI01000006.1 371188 371445 1 + 258 hypothetical protein - none -
fig|6666666.229915.peg.1504 CDS JPZI01000006.1 372466 371417 -1 - 1050 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) LOS core oligosaccharide biosynthesis
fig|6666666.229915.peg.1505 CDS JPZI01000006.1 374067 372649 -3 - 1419 Aspartate ammonia-lyase (EC 4.3.1.1) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229915.peg.1506 CDS JPZI01000006.1 374297 374779 2 + 483 FxsA protein - none -
fig|6666666.229915.peg.1507 CDS JPZI01000006.1 374865 375155 3 + 291 Heat shock protein 60 family co-chaperone GroES GroEL GroES
fig|6666666.229915.peg.1508 CDS JPZI01000006.1 375277 376920 1 + 1644 Heat shock protein 60 family chaperone GroEL GroEL GroES
fig|6666666.229915.peg.1509 CDS JPZI01000006.1 377867 377010 -2 - 858 Methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5) / Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9) 5-FCL-like protein;
One-carbon metabolism by tetrahydropterines;
One-carbon metabolism by tetrahydropterines
fig|6666666.229915.peg.1510 CDS JPZI01000006.1 379431 379312 -3 - 120 Mobile element protein - none -
fig|6666666.229915.peg.1511 CDS JPZI01000006.1 379936 379784 -1 - 153 Mobile element protein - none -
fig|6666666.229915.peg.1512 CDS JPZI01000006.1 380134 380000 -1 - 135 hypothetical protein - none -
fig|6666666.229915.peg.1513 CDS JPZI01000007.1 1546 659 -1 - 888 Peptide transport system permease protein SapC - none -
fig|6666666.229915.peg.1514 CDS JPZI01000007.1 2501 1536 -2 - 966 Peptide transport system permease protein SapB - none -
fig|6666666.229915.peg.1515 CDS JPZI01000007.1 4192 2501 -1 - 1692 Peptide transport periplasmic protein sapA (TC 3.A.1.5.5) - none -
fig|6666666.229915.peg.1516 CDS JPZI01000007.1 4408 5814 1 + 1407 Conserved protein YcjX with nucleoside triphosphate hydrolase domain A conserved operon linked to TyrR and possibly involved in virulence
fig|6666666.229915.peg.1517 CDS JPZI01000007.1 5828 6907 2 + 1080 Membrane protein YcjF A conserved operon linked to TyrR and possibly involved in virulence
fig|6666666.229915.peg.1518 CDS JPZI01000007.1 6991 7950 1 + 960 Transcriptional repressor protein TyrR Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate);
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229915.peg.1519 CDS JPZI01000007.1 8083 7937 -1 - 147 hypothetical protein - none -
fig|6666666.229915.peg.1520 CDS JPZI01000007.1 8627 8331 -2 - 297 RNA-binding protein Hfq Hfl operon;
Polyadenylation bacterial
fig|6666666.229915.peg.1521 CDS JPZI01000007.1 9692 8748 -2 - 945 tRNA dimethylallyltransferase (EC 2.5.1.75) tRNA modification Bacteria;
tRNA processing
fig|6666666.229915.peg.1522 CDS JPZI01000007.1 11557 9695 -1 - 1863 DNA mismatch repair protein MutL DNA repair, bacterial MutL-MutS system
fig|6666666.229915.peg.1523 CDS JPZI01000007.1 13041 11557 -3 - 1485 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) Murein Hydrolases;
Recycling of Peptidoglycan Amino Acids
fig|6666666.229915.peg.1524 CDS JPZI01000007.1 13532 13038 -2 - 495 TsaE protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA Scaffold proteins for [4Fe-4S] cluster assembly (MRP family);
YjeE;
YrdC-YciO-Sua5 protein family
fig|6666666.229915.peg.1525 CDS JPZI01000007.1 15481 13688 -1 - 1794 Mlr4739 protein - none -
fig|6666666.229915.peg.1526 CDS JPZI01000007.1 16455 15868 -3 - 588 RfbJ protein - none -
fig|6666666.229915.peg.1527 CDS JPZI01000007.1 18324 16816 -3 - 1509 conserved domain protein - none -
fig|6666666.229915.peg.1528 CDS JPZI01000007.1 18928 18311 -1 - 618 Glycerate kinase (EC 2.7.1.31) Glycerate metabolism;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Glycine and Serine Utilization
fig|6666666.229915.peg.1529 CDS JPZI01000007.1 20471 18957 -2 - 1515 Dca - none -
fig|6666666.229915.peg.1530 CDS JPZI01000007.1 21539 20991 -2 - 549 3@1-to-5@1 oligoribonuclease (orn) RNA processing and degradation, bacterial
fig|6666666.229915.peg.1531 CDS JPZI01000007.1 21610 22650 1 + 1041 Ribosome small subunit-stimulated GTPase EngC Universal GTPases
fig|6666666.229915.peg.1532 CDS JPZI01000007.1 22871 23128 2 + 258 Phosphotransferase system, phosphocarrier protein HPr Fructose utilization;
Mannitol Utilization
fig|6666666.229915.peg.1533 CDS JPZI01000007.1 23259 24986 3 + 1728 Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) Fructose utilization;
Mannitol Utilization
fig|6666666.229915.peg.1534 CDS JPZI01000007.1 25047 25547 3 + 501 PTS system, glucose-specific IIA component - none -
fig|6666666.229915.peg.1535 CDS JPZI01000007.1 26464 25667 -1 - 798 Mobile element protein - none -
fig|6666666.229915.peg.1536 CDS JPZI01000007.1 26970 26485 -3 - 486 Mobile element protein - none -
fig|6666666.229915.peg.1537 CDS JPZI01000007.1 28975 26933 -1 - 2043 Oligopeptidase A (EC 3.4.24.70) Protein degradation
fig|6666666.229915.peg.1538 CDS JPZI01000007.1 29117 29482 2 + 366 FIG039061: hypothetical protein related to heme utilization - none -
fig|6666666.229915.peg.1539 CDS JPZI01000007.1 29538 31076 3 + 1539 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229915.peg.1540 CDS JPZI01000007.1 31937 31350 -2 - 588 Aminodeoxychorismate lyase (EC 4.1.3.38) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Folate Biosynthesis;
Tryptophan synthesis
fig|6666666.229915.peg.1541 CDS JPZI01000007.1 32914 31940 -1 - 975 Para-aminobenzoate synthase, aminase component (EC 2.6.1.85) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Folate Biosynthesis;
Tryptophan synthesis
fig|6666666.229915.peg.1542 CDS JPZI01000007.1 33018 33584 3 + 567 Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Folate Biosynthesis;
Tryptophan synthesis
fig|6666666.229915.peg.1543 CDS JPZI01000007.1 33740 34684 2 + 945 Hydroxypyruvate reductase (EC 1.1.1.81) Glycerate metabolism;
Glycolate, glyoxylate interconversions
fig|6666666.229915.peg.1544 CDS JPZI01000007.1 34989 35183 3 + 195 Ethidium bromide-methyl viologen resistance protein EmrE - none -
fig|6666666.229915.peg.1545 CDS JPZI01000007.1 35551 36735 1 + 1185 Lipoprotein releasing system transmembrane protein LolC Lipopolysaccharide assembly;
Lipoprotein sorting system
fig|6666666.229915.peg.1546 CDS JPZI01000007.1 36751 37437 1 + 687 Lipoprotein releasing system ATP-binding protein LolD Lipopolysaccharide assembly;
Lipoprotein sorting system
fig|6666666.229915.peg.1547 CDS JPZI01000007.1 37437 38687 3 + 1251 Lipoprotein releasing system transmembrane protein LolE Lipopolysaccharide assembly;
Lipoprotein sorting system
fig|6666666.229915.peg.1548 CDS JPZI01000007.1 38788 39879 1 + 1092 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha (EC 2.5.1.54) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229915.peg.1549 CDS JPZI01000007.1 40241 40128 -2 - 114 hypothetical protein - none -
fig|6666666.229915.peg.1550 CDS JPZI01000007.1 40256 41662 2 + 1407 Replicative DNA helicase (EC 3.6.1.-) - none -
fig|6666666.229915.peg.1551 CDS JPZI01000007.1 41699 42781 2 + 1083 Alanine racemase, biosynthetic (EC 5.1.1.1) Alanine biosynthesis;
Pyruvate Alanine Serine Interconversions
fig|6666666.229915.peg.1552 CDS JPZI01000007.1 42797 44446 2 + 1650 Glucose-6-phosphate isomerase (EC 5.3.1.9) Glycolysis and Gluconeogenesis
fig|6666666.229915.peg.1553 CDS JPZI01000007.1 44755 44558 -1 - 198 putative membrane protein - none -
fig|6666666.229915.peg.1554 CDS JPZI01000007.1 45652 44768 -1 - 885 hypothetical protein - none -
fig|6666666.229915.peg.1555 CDS JPZI01000007.1 45898 46371 1 + 474 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster
fig|6666666.229915.peg.1556 CDS JPZI01000007.1 46378 46803 1 + 426 Transcription termination protein NusB Riboflavin synthesis cluster;
Transcription factors bacterial
fig|6666666.229915.peg.1557 CDS JPZI01000007.1 46822 47805 1 + 984 Thiamine-monophosphate kinase (EC 2.7.4.16) 5-FCL-like protein;
Riboflavin synthesis cluster;
Thiamin biosynthesis
fig|6666666.229915.peg.1558 CDS JPZI01000007.1 47815 48315 1 + 501 Phosphatidylglycerophosphatase A (EC 3.1.3.27) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Riboflavin synthesis cluster
fig|6666666.229915.peg.1559 CDS JPZI01000007.1 48315 48935 3 + 621 L-lysine permease - none -
fig|6666666.229915.peg.1560 CDS JPZI01000007.1 48957 49769 3 + 813 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229915.peg.1561 CDS JPZI01000007.1 50181 49933 -3 - 249 Ferredoxin Soluble cytochromes and functionally related electron carriers
fig|6666666.229915.peg.1562 CDS JPZI01000007.1 50553 50422 -3 - 132 hypothetical protein - none -
fig|6666666.229915.peg.1563 CDS JPZI01000007.1 51703 50573 -1 - 1131 Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) Ribonucleotide reduction
fig|6666666.229915.peg.1564 CDS JPZI01000007.1 52611 51703 -3 - 909 Abort lactococcal phage infection AbiTii - none -
fig|6666666.229915.peg.1565 CDS JPZI01000007.1 54896 52626 -2 - 2271 Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) Ribonucleotide reduction
fig|6666666.229915.peg.1566 CDS JPZI01000007.1 55212 55036 -3 - 177 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229915.peg.1567 CDS JPZI01000007.1 58327 55199 -1 - 3129 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229915.peg.1568 CDS JPZI01000007.1 58600 58355 -1 - 246 Putative DNA-binding protein in cluster with Type I restriction-modification system Restriction-Modification System
fig|6666666.229915.peg.1569 CDS JPZI01000007.1 59741 58605 -2 - 1137 Anticodon nuclease - none -
fig|6666666.229915.peg.1570 CDS JPZI01000007.1 60876 59743 -3 - 1134 Type I restriction-modification system, specificity subunit S (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229915.peg.1571 CDS JPZI01000007.1 61880 60873 -2 - 1008 Putative DNA-binding protein in cluster with Type I restriction-modification system Restriction-Modification System
fig|6666666.229915.peg.1572 CDS JPZI01000007.1 63433 61889 -1 - 1545 Type I restriction-modification system, DNA-methyltransferase subunit M (EC 2.1.1.72) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229915.peg.1573 CDS JPZI01000007.1 63692 63916 2 + 225 hypothetical protein - none -
fig|6666666.229915.peg.1574 CDS JPZI01000007.1 63927 64955 3 + 1029 Ferric iron ABC transporter, iron-binding protein Iron acquisition in Streptococcus
fig|6666666.229915.peg.1575 CDS JPZI01000007.1 64955 66988 2 + 2034 Ferric iron ABC transporter, permease protein Iron acquisition in Streptococcus
fig|6666666.229915.peg.1576 CDS JPZI01000007.1 66972 68012 3 + 1041 Sulfate and thiosulfate import ATP-binding protein CysA (EC 3.6.3.25) Cysteine Biosynthesis;
Uptake of selenate and selenite
fig|6666666.229915.peg.1577 CDS JPZI01000007.1 70118 68067 -2 - 2052 Periplasmic alpha-amylase (EC 3.2.1.1) Maltose and Maltodextrin Utilization
fig|6666666.229915.peg.1578 CDS JPZI01000007.1 71257 70367 -1 - 891 Maltose/maltodextrin ABC transporter, permease protein MalG Maltose and Maltodextrin Utilization
fig|6666666.229915.peg.1579 CDS JPZI01000007.1 72823 71279 -1 - 1545 Maltose/maltodextrin ABC transporter, permease protein MalF Maltose and Maltodextrin Utilization
fig|6666666.229915.peg.1580 CDS JPZI01000007.1 74160 72970 -3 - 1191 Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein MalE Alpha-Amylase locus in Streptocococcus;
Bacterial Chemotaxis;
Maltose and Maltodextrin Utilization
fig|6666666.229915.peg.1581 CDS JPZI01000007.1 74615 75733 2 + 1119 Maltose/maltodextrin transport ATP-binding protein MalK (EC 3.6.3.19) Maltose and Maltodextrin Utilization
fig|6666666.229915.peg.1582 CDS JPZI01000007.1 75810 77093 3 + 1284 Maltoporin (maltose/maltodextrin high-affinity receptor, phage lambda receptor protein) Maltose and Maltodextrin Utilization
fig|6666666.229915.peg.1583 CDS JPZI01000007.1 77181 78080 3 + 900 Maltose operon periplasmic protein MalM Maltose and Maltodextrin Utilization
fig|6666666.229915.peg.1584 CDS JPZI01000008.1 1536 907 -3 - 630 Exopolysaccharide biosynthesis protein - none -
fig|6666666.229915.peg.1585 CDS JPZI01000008.1 2561 1590 -2 - 972 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch;
Threonine and Homoserine Biosynthesis
fig|6666666.229915.peg.1586 CDS JPZI01000008.1 2622 3101 3 + 480 Cys-tRNA(Pro) deacylase YbaK tRNA aminoacylation, Pro
fig|6666666.229915.peg.1587 CDS JPZI01000008.1 3480 3214 -3 - 267 Ferrichrome-iron receptor - none -
fig|6666666.229915.peg.1588 CDS JPZI01000008.1 4955 3477 -2 - 1479 Ferrichrome-iron receptor - none -
fig|6666666.229915.peg.1589 CDS JPZI01000008.1 7147 5009 -1 - 2139 Ferrichrome-iron receptor - none -
fig|6666666.229915.peg.1590 CDS JPZI01000008.1 8819 7422 -2 - 1398 Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps Multidrug Resistance Efflux Pumps;
Riboflavin, FMN and FAD metabolism in plants
fig|6666666.229915.peg.1591 CDS JPZI01000008.1 8846 9460 2 + 615 Riboflavin synthase eubacterial/eukaryotic (EC 2.5.1.9) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster;
riboflavin to FAD
fig|6666666.229915.peg.1592 CDS JPZI01000008.1 9786 9493 -3 - 294 FIG045511: hypothetical antitoxin (to FIG022160: hypothetical toxin) - none -
fig|6666666.229915.peg.1593 CDS JPZI01000008.1 10082 9783 -2 - 300 Phage-related protein - none -
fig|6666666.229915.peg.1594 CDS JPZI01000008.1 10250 10552 2 + 303 FIG004454: RNA binding protein - none -
fig|6666666.229915.peg.1595 CDS JPZI01000008.1 11103 10627 -3 - 477 Transcription elongation factor GreA Transcription factors bacterial
fig|6666666.229915.peg.1596 CDS JPZI01000008.1 11263 12705 1 + 1443 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) Metallocarboxypeptidases (EC 3.4.17.-);
Murein Hydrolases;
Peptidoglycan Biosynthesis
fig|6666666.229915.peg.1597 CDS JPZI01000008.1 12677 12826 2 + 150 hypothetical protein - none -
fig|6666666.229915.peg.1598 CDS JPZI01000008.1 13468 12812 -1 - 657 GTP cyclohydrolase I (EC 3.5.4.16) type 1 Folate Biosynthesis;
Folate biosynthesis cluster;
Molybdenum cofactor biosynthesis;
Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229915.peg.1599 CDS JPZI01000008.1 13598 14812 2 + 1215 Molybdopterin biosynthesis protein MoeA Molybdenum cofactor biosynthesis
fig|6666666.229915.peg.1600 CDS JPZI01000008.1 14828 15559 2 + 732 Molybdopterin biosynthesis protein MoeB Molybdenum cofactor biosynthesis
fig|6666666.229915.peg.1601 CDS JPZI01000008.1 16720 15803 -1 - 918 Mobile element protein - none -
fig|6666666.229915.peg.1602 CDS JPZI01000009.1 696 184 -3 - 513 Protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-) Heme and Siroheme Biosynthesis;
Transport system clustering with HemG
fig|6666666.229915.peg.1603 CDS JPZI01000009.1 2159 696 -2 - 1464 Potassium uptake protein TrkH Hyperosmotic potassium uptake;
Potassium homeostasis;
Potassium homeostasis;
Transport system clustering with HemG
fig|6666666.229915.peg.1604 CDS JPZI01000009.1 2540 2424 -2 - 117 FIG000605: protein co-occurring with transport systems (COG1739) Transport system clustering with HemG
fig|6666666.229915.peg.1605 CDS JPZI01000009.1 2627 2872 2 + 246 tRNA 5-methylaminomethyl-2-thiouridine synthase TusA mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.229915.peg.1606 CDS JPZI01000009.1 3190 4461 1 + 1272 Nicotinamide-nucleotide adenylyltransferase, NadR family (EC 2.7.7.1) / Ribosylnicotinamide kinase (EC 2.7.1.22) NAD and NADP cofactor biosynthesis global;
NAD and NADP cofactor biosynthesis global
fig|6666666.229915.peg.1607 CDS JPZI01000009.1 4477 5160 1 + 684 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases - none -
fig|6666666.229915.peg.1608 CDS JPZI01000009.1 5287 6516 1 + 1230 Tyrosine-specific transport protein - none -
fig|6666666.229915.peg.1609 CDS JPZI01000009.1 7195 6806 -1 - 390 LSU ribosomal protein L17p Ribosome LSU bacterial
fig|6666666.229915.peg.1610 CDS JPZI01000009.1 8226 7237 -3 - 990 DNA-directed RNA polymerase alpha subunit (EC 2.7.7.6) RNA polymerase bacterial
fig|6666666.229915.peg.1611 CDS JPZI01000009.1 8875 8255 -1 - 621 SSU ribosomal protein S4p (S9e) Ribosome SSU bacterial
fig|6666666.229915.peg.1612 CDS JPZI01000009.1 9294 8905 -3 - 390 SSU ribosomal protein S11p (S14e) Ribosome SSU bacterial
fig|6666666.229915.peg.1613 CDS JPZI01000009.1 9666 9310 -3 - 357 SSU ribosomal protein S13p (S18e) Ribosome SSU bacterial
fig|6666666.229915.peg.1614 CDS JPZI01000009.1 9921 9808 -3 - 114 LSU ribosomal protein L36p Ribosome LSU bacterial
fig|6666666.229915.peg.1615 CDS JPZI01000009.1 11272 9947 -1 - 1326 Preprotein translocase secY subunit (TC 3.A.5.1.1) - none -
fig|6666666.229915.peg.1616 CDS JPZI01000009.1 11710 11276 -1 - 435 LSU ribosomal protein L15p (L27Ae) Ribosome LSU bacterial
fig|6666666.229915.peg.1617 CDS JPZI01000009.1 12400 11900 -1 - 501 SSU ribosomal protein S5p (S2e) Ribosome SSU bacterial
fig|6666666.229915.peg.1618 CDS JPZI01000009.1 12769 12416 -1 - 354 LSU ribosomal protein L18p (L5e) Ribosome LSU bacterial
fig|6666666.229915.peg.1619 CDS JPZI01000009.1 13316 12783 -2 - 534 LSU ribosomal protein L6p (L9e) Ribosome LSU bacterial
fig|6666666.229915.peg.1620 CDS JPZI01000009.1 13724 13332 -2 - 393 SSU ribosomal protein S8p (S15Ae) Ribosome SSU bacterial
fig|6666666.229915.peg.1621 CDS JPZI01000009.1 14066 13761 -2 - 306 SSU ribosomal protein S14p (S29e) @ SSU ribosomal protein S14p (S29e), zinc-independent Ribosome SSU bacterial;
Ribosome SSU bacterial
fig|6666666.229915.peg.1622 CDS JPZI01000009.1 14507 14079 -2 - 429 LSU ribosomal protein L5p (L11e) Ribosome LSU bacterial
fig|6666666.229915.peg.1623 CDS JPZI01000009.1 14947 14636 -1 - 312 LSU ribosomal protein L24p (L26e) Ribosome LSU bacterial
fig|6666666.229915.peg.1624 CDS JPZI01000009.1 15329 14958 -2 - 372 LSU ribosomal protein L14p (L23e) Ribosome LSU bacterial
fig|6666666.229915.peg.1625 CDS JPZI01000009.1 15471 15632 3 + 162 hypothetical protein - none -
fig|6666666.229915.peg.1626 CDS JPZI01000009.1 15840 15583 -3 - 258 SSU ribosomal protein S17p (S11e) Ribosome SSU bacterial
fig|6666666.229915.peg.1627 CDS JPZI01000009.1 16031 15840 -2 - 192 LSU ribosomal protein L29p (L35e) Ribosome LSU bacterial
fig|6666666.229915.peg.1628 CDS JPZI01000009.1 16441 16031 -1 - 411 LSU ribosomal protein L16p (L10e) Ribosome LSU bacterial
fig|6666666.229915.peg.1629 CDS JPZI01000009.1 17162 16455 -2 - 708 SSU ribosomal protein S3p (S3e) Ribosome SSU bacterial
fig|6666666.229915.peg.1630 CDS JPZI01000009.1 17511 17179 -3 - 333 LSU ribosomal protein L22p (L17e) Ribosome LSU bacterial
fig|6666666.229915.peg.1631 CDS JPZI01000009.1 17731 17522 -1 - 210 SSU ribosomal protein S19p (S15e) Ribosome SSU bacterial
fig|6666666.229915.peg.1632 CDS JPZI01000009.1 18643 17822 -1 - 822 LSU ribosomal protein L2p (L8e) Ribosome LSU bacterial
fig|6666666.229915.peg.1633 CDS JPZI01000009.1 18966 18664 -3 - 303 LSU ribosomal protein L23p (L23Ae) Ribosome LSU bacterial
fig|6666666.229915.peg.1634 CDS JPZI01000009.1 19565 18963 -2 - 603 LSU ribosomal protein L4p (L1e) Ribosome LSU bacterial
fig|6666666.229915.peg.1635 CDS JPZI01000009.1 20207 19581 -2 - 627 LSU ribosomal protein L3p (L3e) Ribosome LSU bacterial
fig|6666666.229915.peg.1636 CDS JPZI01000009.1 20535 20224 -3 - 312 SSU ribosomal protein S10p (S20e) Ribosome SSU bacterial
fig|6666666.229915.peg.1637 CDS JPZI01000009.1 21315 20848 -3 - 468 Transcriptional regulator, AsnC family - none -
fig|6666666.229915.peg.1638 CDS JPZI01000009.1 22934 21405 -2 - 1530 Arginine/ornithine antiporter ArcD Arginine Deiminase Pathway;
Arginine and Ornithine Degradation;
Polyamine Metabolism
fig|6666666.229915.peg.1639 CDS JPZI01000009.1 23980 23048 -1 - 933 Carbamate kinase (EC 2.7.2.2) Arginine Deiminase Pathway;
Arginine and Ornithine Degradation;
Polyamine Metabolism
fig|6666666.229915.peg.1640 CDS JPZI01000009.1 24994 23990 -1 - 1005 Ornithine carbamoyltransferase (EC 2.1.3.3) Arginine Deiminase Pathway;
Arginine and Ornithine Degradation
fig|6666666.229915.peg.1641 CDS JPZI01000009.1 25238 26629 2 + 1392 Chloride channel protein - none -
fig|6666666.229915.peg.1642 CDS JPZI01000009.1 26632 27618 1 + 987 tRNA dihydrouridine synthase A - none -
fig|6666666.229915.peg.1643 CDS JPZI01000009.1 28666 27674 -1 - 993 Aspartate--ammonia ligase (EC 6.3.1.1) CBSS-262728.1.peg.1737;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229915.peg.1644 CDS JPZI01000009.1 28832 29284 2 + 453 Regulatory protein AsnC CBSS-262728.1.peg.1737
fig|6666666.229915.peg.1645 CDS JPZI01000009.1 29317 30075 1 + 759 Uridine phosphorylase (EC 2.4.2.3) pyrimidine conversions
fig|6666666.229915.peg.1646 CDS JPZI01000009.1 31273 30212 -1 - 1062 Putative permease PerM (= YfgO) - none -
fig|6666666.229915.peg.1647 CDS JPZI01000009.1 31347 31697 3 + 351 Arsenate reductase (EC 1.20.4.1) Anaerobic respiratory reductases;
Arsenic resistance;
Transcription repair cluster
fig|6666666.229915.peg.1648 CDS JPZI01000009.1 32239 31877 -1 - 363 FIG00696564: hypothetical protein - none -
fig|6666666.229915.peg.1649 CDS JPZI01000009.1 32474 32190 -2 - 285 hypothetical protein - none -
fig|6666666.229915.peg.1650 CDS JPZI01000009.1 32686 34017 1 + 1332 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase Methylthiotransferases;
Ribosomal protein S12p Asp methylthiotransferase
fig|6666666.229915.peg.1651 CDS JPZI01000009.1 34140 34544 3 + 405 Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48) LMPTP YfkJ cluster;
Protein deglycation
fig|6666666.229915.peg.1652 CDS JPZI01000009.1 34670 34888 2 + 219 hypothetical protein - none -
fig|6666666.229915.peg.1653 CDS JPZI01000009.1 35145 35026 -3 - 120 Mobile element protein - none -
fig|6666666.229915.peg.1654 CDS JPZI01000009.1 35351 35106 -2 - 246 Mobile element protein - none -
fig|6666666.229915.peg.1655 CDS JPZI01000009.1 35863 35717 -1 - 147 Mobile element protein - none -
fig|6666666.229915.peg.1656 CDS JPZI01000009.1 36021 37916 3 + 1896 Glutathionylspermidine synthase (EC 6.3.1.8) / Glutathionylspermidine amidohydrolase (EC 3.5.1.78) Glutathionylspermidine and Trypanothione;
Glutathionylspermidine and Trypanothione
fig|6666666.229915.peg.1657 CDS JPZI01000009.1 38636 38001 -2 - 636 Cytochrome c-type protein NapC - none -
fig|6666666.229915.peg.1658 CDS JPZI01000009.1 39099 38650 -3 - 450 Nitrate reductase cytochrome c550-type subunit - none -
fig|6666666.229915.peg.1659 CDS JPZI01000009.1 40018 39137 -1 - 882 Polyferredoxin NapH (periplasmic nitrate reductase) - none -
fig|6666666.229915.peg.1660 CDS JPZI01000009.1 40833 40018 -3 - 816 Ferredoxin-type protein NapG (periplasmic nitrate reductase) - none -
fig|6666666.229915.peg.1661 CDS JPZI01000009.1 40936 40799 -1 - 138 hypothetical protein - none -
fig|6666666.229915.peg.1662 CDS JPZI01000009.1 43392 40906 -3 - 2487 Periplasmic nitrate reductase precursor (EC 1.7.99.4) - none -
fig|6666666.229915.peg.1663 CDS JPZI01000009.1 43712 43428 -2 - 285 Periplasmic nitrate reductase component NapD - none -
fig|6666666.229915.peg.1664 CDS JPZI01000009.1 44019 43873 -3 - 147 hypothetical protein - none -
fig|6666666.229915.peg.1665 CDS JPZI01000009.1 43988 45691 2 + 1704 Nitrate/nitrite sensor protein (EC 2.7.3.-) - none -
fig|6666666.229915.peg.1666 CDS JPZI01000009.1 45706 46731 1 + 1026 UDP-N-acetylenolpyruvoylglucosamine reductase (EC 1.1.1.158) Peptidoglycan Biosynthesis;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229915.peg.1667 CDS JPZI01000009.1 46746 47060 3 + 315 Uncharacterized protein conserved in bacteria - none -
fig|6666666.229915.peg.1668 CDS JPZI01000009.1 47245 48093 1 + 849 RNA polymerase sigma factor RpoH Heat shock dnaK gene cluster extended;
Transcription initiation, bacterial sigma factors
fig|6666666.229915.peg.1669 CDS JPZI01000009.1 48687 48160 -3 - 528 DNA transformation protein TfoX CBSS-83333.1.peg.946;
Orphan regulatory proteins
fig|6666666.229915.peg.1670 CDS JPZI01000009.1 51256 50072 -1 - 1185 Translation elongation factor Tu Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Translation elongation factors bacterial;
Universal GTPases
fig|6666666.229915.peg.1671 CDS JPZI01000009.1 53422 51320 -1 - 2103 Translation elongation factor G Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Translation elongation factor G family;
Translation elongation factors bacterial;
Universal GTPases
fig|6666666.229915.peg.1672 CDS JPZI01000009.1 54008 53538 -2 - 471 SSU ribosomal protein S7p (S5e) Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Ribosome SSU bacterial
fig|6666666.229915.peg.1673 CDS JPZI01000009.1 54592 54161 -1 - 432 SSU ribosomal protein S12p (S23e) Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Ribosomal protein S12p Asp methylthiotransferase;
Ribosome SSU bacterial
fig|6666666.229915.peg.1674 CDS JPZI01000009.1 55156 54758 -1 - 399 Ketol-acid reductoisomerase (EC 1.1.1.86) Coenzyme A Biosynthesis
fig|6666666.229915.peg.1675 CDS JPZI01000009.1 55551 55156 -3 - 396 Ketol-acid reductoisomerase (EC 1.1.1.86) Coenzyme A Biosynthesis
fig|6666666.229915.peg.1676 CDS JPZI01000009.1 55641 55799 3 + 159 HTH-type transcriptional regulator IlvY Alanine biosynthesis;
LysR-family proteins in Escherichia coli;
LysR-family proteins in Salmonella enterica Typhimurium
fig|6666666.229915.peg.1677 CDS JPZI01000009.1 55832 56713 2 + 882 Protein rarD - none -
fig|6666666.229915.peg.1678 CDS JPZI01000009.1 57508 56708 -1 - 801 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) Chorismate Synthesis;
Cluster containing Alanyl-tRNA synthetase;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229915.peg.1679 CDS JPZI01000009.1 58063 57512 -1 - 552 TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA - none -
fig|6666666.229915.peg.1680 CDS JPZI01000009.1 58616 58068 -2 - 549 Similar to C-terminal Zn-finger domain of DNA topoisomerase I Conserved gene cluster associated with Met-tRNA formyltransferase;
DNA topoisomerases, Type I, ATP-independent
fig|6666666.229915.peg.1681 CDS JPZI01000009.1 58615 58785 1 + 171 hypothetical protein - none -
fig|6666666.229915.peg.1682 CDS JPZI01000009.1 58761 60374 3 + 1614 DNA recombination protein RmuC DNA repair, bacterial
fig|6666666.229915.peg.1683 CDS JPZI01000009.1 60377 61048 2 + 672 FIG00903983: hypothetical protein - none -
fig|6666666.229915.peg.1684 CDS JPZI01000009.1 61061 61387 2 + 327 Thiosulfate sulfurtransferase GlpE (EC 2.8.1.1) Single-Rhodanese-domain proteins
fig|6666666.229915.peg.1685 CDS JPZI01000009.1 61712 61398 -2 - 315 Uncharacterized protein PM1437 - none -
fig|6666666.229915.peg.1686 CDS JPZI01000009.1 61755 62630 3 + 876 GlpG protein (membrane protein of glp regulon) - none -
fig|6666666.229915.peg.1687 CDS JPZI01000009.1 62692 63447 1 + 756 Glycerol-3-phosphate regulon repressor GlpR - none -
fig|6666666.229915.peg.1688 CDS JPZI01000009.1 63462 63575 3 + 114 hypothetical protein - none -
fig|6666666.229915.peg.1689 CDS JPZI01000009.1 63770 66520 2 + 2751 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229915.peg.1690 CDS JPZI01000009.1 68968 67151 -1 - 1818 ABC transporter ATP-binding protein - none -
fig|6666666.229915.peg.1691 CDS JPZI01000009.1 69092 70750 2 + 1659 Mediator of hyperadherence YidE - none -
fig|6666666.229915.peg.1692 CDS JPZI01000009.1 70907 71620 2 + 714 Uridine monophosphate kinase (EC 2.7.4.22) CBSS-312309.3.peg.1965;
Ribosome recycling related cluster
fig|6666666.229915.peg.1693 CDS JPZI01000009.1 71688 71831 3 + 144 hypothetical protein - none -
fig|6666666.229915.peg.1694 CDS JPZI01000009.1 71845 72402 1 + 558 Ribosome recycling factor Ribosome recycling related cluster;
Translation termination factors bacterial
fig|6666666.229915.peg.1695 CDS JPZI01000009.1 72431 73714 2 + 1284 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.267) CBSS-83331.1.peg.3039;
Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.229915.peg.1696 CDS JPZI01000009.1 73742 74461 2 + 720 Undecaprenyl diphosphate synthase (EC 2.5.1.31) CBSS-83331.1.peg.3039;
Isoprenoid Biosynthesis;
Isoprenoinds for Quinones;
Polyprenyl Diphosphate Biosynthesis
fig|6666666.229915.peg.1697 CDS JPZI01000009.1 74476 75345 1 + 870 Phosphatidate cytidylyltransferase (EC 2.7.7.41) CBSS-316407.3.peg.1371;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229915.peg.1698 CDS JPZI01000009.1 75354 76688 3 + 1335 Membrane-associated zinc metalloprotease - none -
fig|6666666.229915.peg.1699 CDS JPZI01000009.1 76713 79118 3 + 2406 Outer membrane protein assembly factor YaeT precursor Lipopolysaccharide assembly;
Llipid A biosynthesis cluster
fig|6666666.229915.peg.1700 CDS JPZI01000009.1 79222 79800 1 + 579 Outer membrane chaperone Skp (OmpH) precursor @ Outer membrane protein H precursor Lipopolysaccharide assembly;
Llipid A biosynthesis cluster;
Periplasmic Stress Response
fig|6666666.229915.peg.1701 CDS JPZI01000009.1 79800 80822 3 + 1023 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC 2.3.1.-) KDO2-Lipid A biosynthesis;
Llipid A biosynthesis cluster
fig|6666666.229915.peg.1702 CDS JPZI01000009.1 80959 81369 1 + 411 3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabZ form (EC 4.2.1.59) Fatty Acid Biosynthesis FASII;
Llipid A biosynthesis cluster
fig|6666666.229915.peg.1703 CDS JPZI01000009.1 81390 82178 3 + 789 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase (EC 2.3.1.129) KDO2-Lipid A biosynthesis;
Llipid A biosynthesis cluster
fig|6666666.229915.peg.1704 CDS JPZI01000009.1 82263 83447 3 + 1185 Lipid-A-disaccharide synthase (EC 2.4.1.182) KDO2-Lipid A biosynthesis;
Llipid A biosynthesis cluster
fig|6666666.229915.peg.1705 CDS JPZI01000009.1 83440 84039 1 + 600 Ribonuclease HII (EC 3.1.26.4) Conserved gene cluster associated with Met-tRNA formyltransferase;
Ribonuclease H
fig|6666666.229915.peg.1706 CDS JPZI01000009.1 84079 85947 1 + 1869 Putative transport protein - none -
fig|6666666.229915.peg.1707 CDS JPZI01000009.1 85958 86566 2 + 609 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5) CBSS-316407.3.peg.1371;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229915.peg.1708 CDS JPZI01000009.1 86577 87209 3 + 633 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229915.peg.1709 CDS JPZI01000009.1 87209 88138 2 + 930 Phosphatidate cytidylyltransferase (EC 2.7.7.41) CBSS-316407.3.peg.1371;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229915.peg.1710 CDS JPZI01000009.1 88217 88798 2 + 582 Molybdopterin biosynthesis molybdochelatase MogA Molybdenum cofactor biosynthesis
fig|6666666.229915.peg.1711 CDS JPZI01000010.1 299 418 2 + 120 FIG00697497: hypothetical protein - none -
fig|6666666.229915.peg.1712 CDS JPZI01000010.1 750 454 -3 - 297 FIG00699498: hypothetical protein - none -
fig|6666666.229915.peg.1713 CDS JPZI01000010.1 1089 1493 3 + 405 hypothetical protein - none -
fig|6666666.229915.peg.1714 CDS JPZI01000010.1 1498 3006 1 + 1509 Phage-related protein - none -
fig|6666666.229915.peg.1715 CDS JPZI01000010.1 3057 3488 3 + 432 FIG01217275: hypothetical protein - none -
fig|6666666.229915.peg.1716 CDS JPZI01000010.1 3488 3907 2 + 420 hypothetical protein - none -
fig|6666666.229915.peg.1717 CDS JPZI01000010.1 4058 6142 2 + 2085 Phage tape measure protein Phage tail proteins
fig|6666666.229915.peg.1718 CDS JPZI01000010.1 6146 6913 2 + 768 FIG01218156: hypothetical protein - none -
fig|6666666.229915.peg.1719 CDS JPZI01000010.1 7041 7232 3 + 192 Phage protein - none -
fig|6666666.229915.peg.1720 CDS JPZI01000010.1 7232 8074 2 + 843 FIG00643583: hypothetical protein - none -
fig|6666666.229915.peg.1721 CDS JPZI01000010.1 8433 8149 -3 - 285 Phage protein - none -
fig|6666666.229915.peg.1722 CDS JPZI01000010.1 8683 8423 -1 - 261 hypothetical protein; Some similarities with a protein of bacteriophage - none -
fig|6666666.229915.peg.1723 CDS JPZI01000010.1 8813 9457 2 + 645 Phage baseplate Phage baseplate proteins
fig|6666666.229915.peg.1724 CDS JPZI01000010.1 9454 9813 1 + 360 phage-related protein - none -
fig|6666666.229915.peg.1725 CDS JPZI01000010.1 10258 9839 -1 - 420 hypothetical protein - none -
fig|6666666.229915.peg.1726 CDS JPZI01000010.1 10492 10310 -1 - 183 hypothetical protein - none -
fig|6666666.229915.peg.1727 CDS JPZI01000010.1 10746 11897 3 + 1152 Family of unknown function (DUF450) family - none -
fig|6666666.229915.peg.1728 CDS JPZI01000010.1 12665 12826 2 + 162 hypothetical protein - none -
fig|6666666.229915.peg.1729 CDS JPZI01000010.1 12900 13271 3 + 372 hypothetical protein - none -
fig|6666666.229915.peg.1730 CDS JPZI01000010.1 15138 13579 -3 - 1560 GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2) Purine conversions
fig|6666666.229915.peg.1731 CDS JPZI01000010.1 15828 15559 -3 - 270 DNA-damage-inducible protein J DNA repair, bacterial;
Toxin-antitoxin replicon stabilization systems
fig|6666666.229915.peg.1732 CDS JPZI01000010.1 15926 16102 2 + 177 hypothetical protein - none -
fig|6666666.229915.peg.1733 CDS JPZI01000010.1 17437 16085 -1 - 1353 C4-dicarboxylate transporter DcuC (TC 2.A.61.1.1) Citrate Metabolism, Transport, and Regulation
fig|6666666.229915.peg.1734 CDS JPZI01000010.1 17863 18318 1 + 456 FIG000325: clustered with transcription termination protein NusA NusA-TFII Cluster;
Transcription factors bacterial
fig|6666666.229915.peg.1735 CDS JPZI01000010.1 18342 19838 3 + 1497 Transcription termination protein NusA NusA-TFII Cluster;
Transcription factors bacterial
fig|6666666.229915.peg.1736 CDS JPZI01000010.1 19854 22346 3 + 2493 Translation initiation factor 2 CBSS-138119.3.peg.2719;
NusA-TFII Cluster;
Translation initiation factors bacterial;
Universal GTPases
fig|6666666.229915.peg.1737 CDS JPZI01000010.1 22790 25393 2 + 2604 Type III restriction-modification system methylation subunit (EC 2.1.1.72) Restriction-Modification System
fig|6666666.229915.peg.1738 CDS JPZI01000010.1 25494 28784 3 + 3291 FIG00698532: hypothetical protein - none -
fig|6666666.229915.peg.1739 CDS JPZI01000010.1 28777 31641 1 + 2865 helicase domain protein - none -
fig|6666666.229915.peg.1740 CDS JPZI01000010.1 31730 32116 2 + 387 Ribosome-binding factor A CBSS-138119.3.peg.2719;
NusA-TFII Cluster;
Translation initiation factors bacterial
fig|6666666.229915.peg.1741 CDS JPZI01000010.1 32116 33033 1 + 918 tRNA pseudouridine synthase B (EC 4.2.1.70) CBSS-138119.3.peg.2719;
RNA pseudouridine syntheses;
Riboflavin, FMN and FAD metabolism in plants;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229915.peg.1742 CDS JPZI01000010.1 33340 33215 -1 - 126 Sucrose-6-phosphate hydrolase (EC 3.2.1.B3) - none -
fig|6666666.229915.peg.1743 CDS JPZI01000010.1 33545 33330 -2 - 216 Sucrose-6-phosphate hydrolase (EC 3.2.1.B3) - none -
fig|6666666.229915.peg.1744 CDS JPZI01000010.1 33721 33587 -1 - 135 hypothetical protein - none -
fig|6666666.229915.peg.1745 CDS JPZI01000010.1 33936 33718 -3 - 219 Fructokinase (EC 2.7.1.4) Fructose utilization;
Mannitol Utilization
fig|6666666.229915.peg.1746 CDS JPZI01000010.1 34564 33953 -1 - 612 hypothetical protein - none -
fig|6666666.229915.peg.1747 CDS JPZI01000010.1 35879 34692 -2 - 1188 Tyrosyl-tRNA synthetase (EC 6.1.1.1) tRNA aminoacylation, Tyr
fig|6666666.229915.peg.1748 CDS JPZI01000010.1 36852 36127 -3 - 726 Sugar/maltose fermentation stimulation protein homolog Fermentations: Mixed acid
fig|6666666.229915.peg.1749 CDS JPZI01000010.1 37155 38690 3 + 1536 NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2) Phosphate metabolism
fig|6666666.229915.peg.1750 CDS JPZI01000010.1 38701 40125 1 + 1425 NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) Phosphate metabolism
fig|6666666.229915.peg.1751 CDS JPZI01000010.1 40308 40111 -3 - 198 hypothetical protein - none -
fig|6666666.229915.peg.1752 CDS JPZI01000010.1 40307 40549 2 + 243 DNA-damage-inducible protein d - none -
fig|6666666.229915.peg.1753 CDS JPZI01000010.1 40681 40520 -1 - 162 hypothetical protein - none -
fig|6666666.229915.peg.1754 CDS JPZI01000010.1 41149 42003 1 + 855 filamentation induced by cAMP protein Fic-like protein - none -
fig|6666666.229915.peg.1755 CDS JPZI01000010.1 42537 43616 3 + 1080 Selenide,water dikinase (EC 2.7.9.3) Selenocysteine metabolism;
tRNA modification Bacteria
fig|6666666.229915.peg.1756 CDS JPZI01000010.1 43850 44920 2 + 1071 Putative ABC transporter of substrate X, ATP-binding subunit ABC transporter of unknown substrate X
fig|6666666.229915.peg.1757 CDS JPZI01000010.1 44917 45786 1 + 870 Putative ABC transporter of substrate X, permease subunit I ABC transporter of unknown substrate X
fig|6666666.229915.peg.1758 CDS JPZI01000010.1 45783 46634 3 + 852 Putative ABC transporter of substrate X, permease subunit II ABC transporter of unknown substrate X
fig|6666666.229915.peg.1759 CDS JPZI01000010.1 46654 47745 1 + 1092 Possible ABC transporter, periplasmic substrate X binding protein precursor ABC transporter of unknown substrate X
fig|6666666.229915.peg.1760 CDS JPZI01000010.1 47977 47795 -1 - 183 Autoinducer 2 (AI-2) ABC transport system, periplasmic AI-2 binding protein LsrB Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229915.peg.1761 CDS JPZI01000010.1 49787 47958 -2 - 1830 Excinuclease ABC subunit C DNA repair, UvrABC system
fig|6666666.229915.peg.1762 CDS JPZI01000010.1 51008 50235 -2 - 774 3-deoxy-manno-octulosonate cytidylyltransferase (EC 2.7.7.38) KDO2-Lipid A biosynthesis
fig|6666666.229915.peg.1763 CDS JPZI01000010.1 51189 51010 -3 - 180 FIG002473: Protein YcaR in KDO2-Lipid A biosynthesis cluster Broadly distributed proteins not in subsystems
fig|6666666.229915.peg.1764 CDS JPZI01000010.1 52185 51211 -3 - 975 Tetraacyldisaccharide 4@1-kinase (EC 2.7.1.130) KDO2-Lipid A biosynthesis
fig|6666666.229915.peg.1765 CDS JPZI01000010.1 53959 52211 -1 - 1749 Lipid A export ATP-binding/permease protein MsbA - none -
fig|6666666.229915.peg.1766 CDS JPZI01000010.1 56435 54006 -2 - 2430 DNA internalization-related competence protein ComEC/Rec2 KDO2-Lipid A biosynthesis
fig|6666666.229915.peg.1767 CDS JPZI01000010.1 56731 57168 1 + 438 C4-type zinc finger protein, DksA/TraR family - none -
fig|6666666.229915.peg.1768 CDS JPZI01000010.1 57285 58751 3 + 1467 Poly(A) polymerase (EC 2.7.7.19) Polyadenylation bacterial
fig|6666666.229915.peg.1769 CDS JPZI01000010.1 58744 59244 1 + 501 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) Folate Biosynthesis;
Folate biosynthesis cluster
fig|6666666.229915.peg.1770 CDS JPZI01000010.1 59668 59306 -1 - 363 hypothetical protein - none -
fig|6666666.229915.peg.1771 CDS JPZI01000010.1 59953 59822 -1 - 132 hypothetical protein - none -
fig|6666666.229915.peg.1772 CDS JPZI01000010.1 62153 60018 -2 - 2136 Phosphate acetyltransferase (EC 2.3.1.8) Fermentations: Lactate;
Fermentations: Mixed acid;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229915.peg.1773 CDS JPZI01000010.1 63425 62223 -2 - 1203 Acetate kinase (EC 2.7.2.1) Fermentations: Lactate;
Fermentations: Mixed acid;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229915.peg.1774 CDS JPZI01000010.1 63691 64134 1 + 444 FIG00638298: membrane protein YfbV - none -
fig|6666666.229915.peg.1775 CDS JPZI01000010.1 64315 64857 1 + 543 Colicin V production protein - none -
fig|6666666.229915.peg.1776 CDS JPZI01000010.1 67079 64992 -2 - 2088 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) Glycogen metabolism;
Glycogen metabolism cluster;
Maltose and Maltodextrin Utilization;
Maltose utilization cluster
fig|6666666.229915.peg.1777 CDS JPZI01000010.1 69570 67180 -3 - 2391 Maltodextrin phosphorylase (EC 2.4.1.1) Glycogen metabolism;
Maltose and Maltodextrin Utilization;
Maltose utilization cluster
fig|6666666.229915.peg.1778 CDS JPZI01000010.1 69743 72457 2 + 2715 Transcriptional activator of maltose regulon, MalT Maltose and Maltodextrin Utilization;
Maltose utilization cluster
fig|6666666.229915.peg.1779 CDS JPZI01000010.1 73476 72616 -3 - 861 Tellurite resistance protein TehB Tellurite resistance: Chromosomal determinants
fig|6666666.229915.peg.1780 CDS JPZI01000010.1 74425 73628 -1 - 798 Mobile element protein - none -
fig|6666666.229915.peg.1781 CDS JPZI01000010.1 74805 74446 -3 - 360 Mobile element protein - none -
fig|6666666.229915.peg.1782 CDS JPZI01000010.1 75122 74877 -2 - 246 FIG00696862: hypothetical protein - none -
fig|6666666.229915.peg.1783 CDS JPZI01000010.1 76653 75316 -3 - 1338 Argininosuccinate synthase (EC 6.3.4.5) - none -
fig|6666666.229915.peg.1784 CDS JPZI01000010.1 77569 76742 -1 - 828 Nucleoside-diphosphate-sugar epimerases - none -
fig|6666666.229915.peg.1785 CDS JPZI01000010.1 77936 79519 2 + 1584 Peptide chain release factor 3 Translation termination factors bacterial
fig|6666666.229915.peg.1786 CDS JPZI01000010.1 79708 80058 1 + 351 YPPCP.09C homologue - none -
fig|6666666.229915.peg.1787 CDS JPZI01000010.1 80055 80354 3 + 300 Putative transcriptional regulator - none -
fig|6666666.229915.peg.1788 CDS JPZI01000010.1 83323 80390 -1 - 2934 Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42) Ammonia assimilation;
CBSS-316057.3.peg.3521
fig|6666666.229915.peg.1789 CDS JPZI01000010.1 83748 86243 3 + 2496 CRISPR-associated protein Cas3@1@1 CRISPRs
fig|6666666.229915.peg.1790 CDS JPZI01000010.1 86268 86951 3 + 684 CRISPR-associated protein, Cas5d family CRISPRs
fig|6666666.229915.peg.1791 CDS JPZI01000010.1 86948 88711 2 + 1764 CRISPR-associated protein, Csd1 family CRISPRs
fig|6666666.229915.peg.1792 CDS JPZI01000010.1 88724 89605 2 + 882 CRISPR-associated protein, Csd2/Csh2 family - none -
fig|6666666.229915.peg.1793 CDS JPZI01000010.1 89848 90495 1 + 648 CRISPR-associated RecB family exonuclease Cas4 / CRISPR-associated protein Cas1 CRISPRs
fig|6666666.229915.peg.1794 CDS JPZI01000010.1 90513 91634 3 + 1122 hypothetical protein - none -
fig|6666666.229915.peg.1795 CDS JPZI01000010.1 92000 93013 2 + 1014 CRISPR-associated protein Cas1 CRISPRs
fig|6666666.229915.peg.1796 CDS JPZI01000010.1 93017 93310 2 + 294 CRISPR-associated protein Cas2 CRISPRs
fig|6666666.229915.peg.1797 CDS JPZI01000010.1 95362 95604 1 + 243 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) - none -
fig|6666666.229915.peg.1798 CDS JPZI01000010.1 95626 96630 1 + 1005 Thiamin ABC transporter, substrate-binding component Thiamin biosynthesis
fig|6666666.229915.peg.1799 CDS JPZI01000010.1 96639 98267 3 + 1629 Thiamin ABC transporter, transmembrane component Thiamin biosynthesis
fig|6666666.229915.peg.1800 CDS JPZI01000010.1 98251 98886 1 + 636 Thiamin ABC transporter, ATPase component / Thiamine transport ATP-binding protein thiQ Thiamin biosynthesis
fig|6666666.229915.peg.1801 CDS JPZI01000010.1 99111 99275 3 + 165 FIG022160: hypothetical toxin - none -
fig|6666666.229915.peg.1802 CDS JPZI01000010.1 99272 99562 2 + 291 FIG045511: hypothetical antitoxin (to FIG022160: hypothetical toxin) - none -
fig|6666666.229915.peg.1803 CDS JPZI01000010.1 99578 100582 2 + 1005 Biotin synthase (EC 2.8.1.6) Biotin biosynthesis Experimental
fig|6666666.229915.peg.1804 CDS JPZI01000010.1 103389 101923 -3 - 1467 PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69) Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism;
Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229915.peg.1805 CDS JPZI01000010.1 104766 103636 -3 - 1131 Sialic acid-induced transmembrane protein YjhT(NanM), possible mutarotase Sialic Acid Metabolism
fig|6666666.229915.peg.1806 CDS JPZI01000010.1 106755 104905 -3 - 1851 TRAP-type transport system, large permease component, predicted N-acetylneuraminate transporter / TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229915.peg.1807 CDS JPZI01000010.1 107805 106819 -3 - 987 TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein Sialic Acid Metabolism
fig|6666666.229915.peg.1808 CDS JPZI01000010.1 108048 108749 3 + 702 N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9) Sialic Acid Metabolism
fig|6666666.229915.peg.1809 CDS JPZI01000010.1 108761 109648 2 + 888 N-acetylmannosamine kinase (EC 2.7.1.60) Sialic Acid Metabolism
fig|6666666.229915.peg.1810 CDS JPZI01000010.1 109658 110527 2 + 870 Sialic acid utilization regulator, RpiR family Sialic Acid Metabolism
fig|6666666.229915.peg.1811 CDS JPZI01000010.1 110537 111415 2 + 879 N-acetylneuraminate lyase (EC 4.1.3.3) Sialic Acid Metabolism
fig|6666666.229915.peg.1812 CDS JPZI01000010.1 111522 112325 3 + 804 Glucosamine-6-phosphate deaminase (EC 3.5.99.6) Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism
fig|6666666.229915.peg.1813 CDS JPZI01000010.1 112381 113526 1 + 1146 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism
fig|6666666.229915.peg.1814 CDS JPZI01000010.1 113890 114030 1 + 141 hypothetical protein - none -
fig|6666666.229915.peg.1815 CDS JPZI01000010.1 114568 114068 -1 - 501 Thiol peroxidase, Tpx-type (EC 1.11.1.15) Thioredoxin-disulfide reductase
fig|6666666.229915.peg.1816 CDS JPZI01000010.1 115674 114610 -3 - 1065 Ferrochelatase, protoheme ferro-lyase (EC 4.99.1.1) Heme and Siroheme Biosynthesis
fig|6666666.229915.peg.1817 CDS JPZI01000010.1 116089 115667 -1 - 423 FIG017415: ydiI hotdog fold superfamily - none -
fig|6666666.229915.peg.1818 CDS JPZI01000010.1 119137 116099 -1 - 3039 Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD Glycolate, glyoxylate interconversions
fig|6666666.229915.peg.1819 CDS JPZI01000010.1 119637 120677 3 + 1041 Outer membrane protein A precursor Osmoregulation
fig|6666666.229915.peg.1820 CDS JPZI01000010.1 120877 120993 1 + 117 LemA family protein - none -
fig|6666666.229915.peg.1821 CDS JPZI01000010.1 120974 121144 2 + 171 hypothetical protein - none -
fig|6666666.229915.peg.1822 CDS JPZI01000010.1 121443 121772 3 + 330 Glutaredoxin-related protein Glutaredoxins
fig|6666666.229915.peg.1823 CDS JPZI01000010.1 121895 121782 -2 - 114 hypothetical protein - none -
fig|6666666.229915.peg.1824 CDS JPZI01000010.1 121897 122349 1 + 453 putative membrane protein - none -
fig|6666666.229915.peg.1825 CDS JPZI01000010.1 122350 122739 1 + 390 COG2363 - none -
fig|6666666.229915.peg.1826 CDS JPZI01000010.1 122736 126788 3 + 4053 HrpA-like helicases - none -
fig|6666666.229915.peg.1827 CDS JPZI01000010.1 126801 127934 3 + 1134 putative ATPase - none -
fig|6666666.229915.peg.1828 CDS JPZI01000010.1 127924 128760 1 + 837 hypothetical protein - none -
fig|6666666.229915.peg.1829 CDS JPZI01000010.1 130483 129818 -1 - 666 Phosphoglycolate phosphatase (EC 3.1.3.18) 2-phosphoglycolate salvage;
Glycolate, glyoxylate interconversions
fig|6666666.229915.peg.1830 CDS JPZI01000010.1 131056 131172 1 + 117 hypothetical protein - none -
fig|6666666.229915.peg.1831 CDS JPZI01000010.1 131459 131148 -2 - 312 Cytochrome C553 (soluble cytochrome f) Iron transport system including ABC transporter;
Soluble cytochromes and functionally related electron carriers
fig|6666666.229915.peg.1832 CDS JPZI01000010.1 131957 131466 -2 - 492 Possible periplasmic thiredoxin Iron transport system including ABC transporter
fig|6666666.229915.peg.1833 CDS JPZI01000010.1 132618 131947 -3 - 672 Fe2+ ABC transporter, ATP-binding subunit Iron transport system including ABC transporter
fig|6666666.229915.peg.1834 CDS JPZI01000010.1 133759 132620 -1 - 1140 Cell division protein FtsX Bacterial Cell Division
fig|6666666.229915.peg.1835 CDS JPZI01000010.1 135071 133746 -2 - 1326 Cell division protein FtsX Bacterial Cell Division
fig|6666666.229915.peg.1836 CDS JPZI01000010.1 136504 135074 -1 - 1431 Fe2+ ABC transporter, substrate binding protein Iron transport system including ABC transporter
fig|6666666.229915.peg.1837 CDS JPZI01000010.1 137164 136643 -1 - 522 Periplasmic protein p19 involved in high-affinity Fe2+ transport Iron transport system including ABC transporter
fig|6666666.229915.peg.1838 CDS JPZI01000010.1 139111 137207 -1 - 1905 High-affinity Fe2+/Pb2+ permease precursor Iron transport system including ABC transporter
fig|6666666.229915.peg.1839 CDS JPZI01000010.1 140219 140518 2 + 300 hypothetical protein - none -
fig|6666666.229915.peg.1840 CDS JPZI01000010.1 140602 140477 -1 - 126 hypothetical protein - none -
fig|6666666.229915.peg.1841 CDS JPZI01000010.1 143045 140652 -2 - 2394 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) DNA uptake cluster;
Peptidoglycan Biosynthesis;
Type IV pilus
fig|6666666.229915.peg.1842 CDS JPZI01000010.1 143353 143090 -1 - 264 hypothetical protein - none -
fig|6666666.229915.peg.1843 CDS JPZI01000010.1 143696 143355 -2 - 342 probable iron binding protein from the HesB_IscA_SufA family - none -
fig|6666666.229915.peg.1844 CDS JPZI01000010.1 143830 144630 1 + 801 Methionine aminopeptidase (EC 3.4.11.18) CBSS-312309.3.peg.1965;
Translation termination factors bacterial
fig|6666666.229915.peg.1845 CDS JPZI01000010.1 144696 147287 3 + 2592 [Protein-PII] uridylyltransferase (EC 2.7.7.59) Ammonia assimilation;
CBSS-312309.3.peg.1965
fig|6666666.229915.peg.1846 CDS JPZI01000010.1 148643 147360 -2 - 1284 Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8) CBSS-196164.1.peg.461;
Heme and Siroheme Biosynthesis
fig|6666666.229915.peg.1847 CDS JPZI01000010.1 148772 149845 2 + 1074 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) - none -
fig|6666666.229915.peg.1848 CDS JPZI01000011.1 1611 2720 3 + 1110 Cystathionine gamma-synthase (EC 2.5.1.48) Methionine Biosynthesis
fig|6666666.229915.peg.1849 CDS JPZI01000011.1 2726 3739 2 + 1014 D-lactate dehydrogenase (EC 1.1.1.28) Fermentations: Lactate;
Fermentations: Mixed acid
fig|6666666.229915.peg.1850 CDS JPZI01000011.1 3947 4162 2 + 216 Thioredoxin - none -
fig|6666666.229915.peg.1851 CDS JPZI01000011.1 5297 4338 -2 - 960 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) RNA pseudouridine syntheses;
Ribosome biogenesis bacterial
fig|6666666.229915.peg.1852 CDS JPZI01000011.1 5759 8653 2 + 2895 Ribonuclease E (EC 3.1.26.12) RNA processing and degradation, bacterial;
Ribosome biogenesis bacterial
fig|6666666.229915.peg.1853 CDS JPZI01000011.1 9481 9092 -1 - 390 INTEGRAL MEMBRANE PROTEIN (Rhomboid family) - none -
fig|6666666.229915.peg.1854 CDS JPZI01000011.1 11411 9561 -2 - 1851 Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8) Biogenesis of c-type cytochromes;
Periplasmic disulfide interchange
fig|6666666.229915.peg.1855 CDS JPZI01000011.1 11592 12161 3 + 570 Lysine decarboxylase family - none -
fig|6666666.229915.peg.1856 CDS JPZI01000011.1 12374 12640 2 + 267 LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-independent Ribosome LSU bacterial;
Ribosome LSU bacterial
fig|6666666.229915.peg.1857 CDS JPZI01000011.1 12650 12790 2 + 141 LSU ribosomal protein L36p Ribosome LSU bacterial
fig|6666666.229915.peg.1858 CDS JPZI01000011.1 13049 13756 2 + 708 Aerobic respiration control protein arcA - none -
fig|6666666.229915.peg.1859 CDS JPZI01000011.1 14850 13852 -3 - 999 Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229915.peg.1860 CDS JPZI01000011.1 15830 14847 -2 - 984 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229915.peg.1861 CDS JPZI01000011.1 16778 15840 -2 - 939 Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229915.peg.1862 CDS JPZI01000011.1 17708 16788 -2 - 921 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229915.peg.1863 CDS JPZI01000011.1 17803 17690 -1 - 114 hypothetical protein - none -
fig|6666666.229915.peg.1864 CDS JPZI01000011.1 19436 17811 -2 - 1626 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229915.peg.1865 CDS JPZI01000011.1 19815 20297 3 + 483 tmRNA-binding protein SmpB Heat shock dnaK gene cluster extended;
Translation termination factors bacterial
fig|6666666.229915.peg.1866 CDS JPZI01000011.1 20249 20386 2 + 138 hypothetical protein - none -
fig|6666666.229915.peg.1867 CDS JPZI01000011.1 20835 20395 -3 - 441 Transcriptional regulator, MarR family - none -
fig|6666666.229915.peg.1868 CDS JPZI01000011.1 20988 21656 3 + 669 probable integral membrane protein NMA1777 - none -
fig|6666666.229915.peg.1869 CDS JPZI01000011.1 21653 21847 2 + 195 probable integral membrane protein NMA1777 - none -
fig|6666666.229915.peg.1870 CDS JPZI01000011.1 25248 21907 -3 - 3342 Superfamily I DNA/RNA helicase protein - none -
fig|6666666.229915.peg.1871 CDS JPZI01000011.1 26655 25486 -3 - 1170 GTP-binding protein Obg CBSS-176279.3.peg.868;
Universal GTPases
fig|6666666.229915.peg.1872 CDS JPZI01000011.1 27609 26692 -3 - 918 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229915.peg.1873 CDS JPZI01000011.1 28621 27677 -1 - 945 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229915.peg.1874 CDS JPZI01000011.1 28950 28693 -3 - 258 LSU ribosomal protein L27p CBSS-176279.3.peg.868;
Ribosome LSU bacterial
fig|6666666.229915.peg.1875 CDS JPZI01000011.1 29282 28971 -2 - 312 LSU ribosomal protein L21p CBSS-176279.3.peg.868;
Ribosome LSU bacterial
fig|6666666.229915.peg.1876 CDS JPZI01000011.1 29548 30519 1 + 972 Octaprenyl diphosphate synthase (EC 2.5.1.90) / Dimethylallyltransferase (EC 2.5.1.1) / (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10) / Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29) Isoprenoid Biosynthesis;
Isoprenoid Biosynthesis;
Isoprenoid Biosynthesis: Interconversions;
Isoprenoinds for Quinones;
Isoprenoinds for Quinones;
Isoprenoinds for Quinones;
Polyprenyl Diphosphate Biosynthesis;
Polyprenyl Diphosphate Biosynthesis
fig|6666666.229915.peg.1877 CDS JPZI01000011.1 30521 31249 2 + 729 FIG053235: Diacylglucosamine hydrolase like Llipid A biosynthesis cluster
fig|6666666.229915.peg.1878 CDS JPZI01000011.1 31755 33179 3 + 1425 tRNA-i(6)A37 methylthiotransferase Methylthiotransferases;
tRNA-methylthiotransferase containing cluster;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229915.peg.1879 CDS JPZI01000011.1 33802 33236 -1 - 567 Primosomal replication protein N@1@1 - none -
fig|6666666.229915.peg.1880 CDS JPZI01000011.1 35224 33872 -1 - 1353 Histidine permease YuiF - none -
fig|6666666.229915.peg.1881 CDS JPZI01000011.1 36314 35661 -2 - 654 Ribonuclease T (EC 3.1.13.-) tRNA processing
fig|6666666.229915.peg.1882 CDS JPZI01000011.1 36803 36396 -2 - 408 Lactoylglutathione lyase (EC 4.4.1.5) Glutathione: Non-redox reactions;
Methylglyoxal Metabolism
fig|6666666.229915.peg.1883 CDS JPZI01000011.1 38910 36958 -3 - 1953 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229915.peg.1884 CDS JPZI01000011.1 39312 40643 3 + 1332 Glycerol-3-phosphate transporter - none -
fig|6666666.229915.peg.1885 CDS JPZI01000011.1 40787 43354 2 + 2568 FIG00362583: hypothetical protein - none -
fig|6666666.229915.peg.1886 CDS JPZI01000011.1 44158 43433 -1 - 726 tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229915.peg.1887 CDS JPZI01000011.1 44957 46735 2 + 1779 Aspartyl-tRNA synthetase (EC 6.1.1.12) tRNA aminoacylation, Asp and Asn
fig|6666666.229915.peg.1888 CDS JPZI01000011.1 47122 48390 1 + 1269 Mn2+ and Fe2+ transporters of the NRAMP family - none -
fig|6666666.229915.peg.1889 CDS JPZI01000011.1 48571 48942 1 + 372 Dihydroneopterin triphosphate pyrophosphohydolase type 2 Queuosine-Archaeosine Biosynthesis
fig|6666666.229915.peg.1890 CDS JPZI01000011.1 48976 49716 1 + 741 FIG000859: hypothetical protein YebC Riboflavin, FMN and FAD metabolism in plants;
RuvABC plus a hypothetical
fig|6666666.229915.peg.1891 CDS JPZI01000011.1 49863 50138 3 + 276 excinuclease ABC subunit A - none -
fig|6666666.229915.peg.1892 CDS JPZI01000011.1 50190 50762 3 + 573 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) RuvABC plus a hypothetical
fig|6666666.229915.peg.1893 CDS JPZI01000011.1 50826 51440 3 + 615 Holliday junction DNA helicase RuvA RuvABC plus a hypothetical
fig|6666666.229915.peg.1894 CDS JPZI01000011.1 51455 52468 2 + 1014 Holliday junction DNA helicase RuvB RuvABC plus a hypothetical
fig|6666666.229915.peg.1895 CDS JPZI01000011.1 52849 52523 -1 - 327 Chromosome segregation ATPases - none -
fig|6666666.229915.peg.1896 CDS JPZI01000011.1 53405 54865 2 + 1461 Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229915.peg.1897 CDS JPZI01000011.1 54880 56016 1 + 1137 Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229915.peg.1898 CDS JPZI01000011.1 56293 56418 1 + 126 FIG00362582: hypothetical protein - none -
fig|6666666.229915.peg.1899 CDS JPZI01000011.1 56534 56938 2 + 405 4-hydroxybenzoyl-CoA thioesterase family active site Ton and Tol transport systems
fig|6666666.229915.peg.1900 CDS JPZI01000011.1 56968 57657 1 + 690 MotA/TolQ/ExbB proton channel family protein Ton and Tol transport systems
fig|6666666.229915.peg.1901 CDS JPZI01000011.1 57743 58165 2 + 423 Tol biopolymer transport system, TolR protein Ton and Tol transport systems
fig|6666666.229915.peg.1902 CDS JPZI01000011.1 58182 59414 3 + 1233 TolA protein Ton and Tol transport systems
fig|6666666.229915.peg.1903 CDS JPZI01000011.1 59449 60729 1 + 1281 tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins Ton and Tol transport systems
fig|6666666.229915.peg.1904 CDS JPZI01000011.1 60744 61211 3 + 468 18K peptidoglycan-associated outer membrane lipoprotein; Peptidoglycan-associated lipoprotein precursor; Outer membrane protein P6; OmpA/MotB precursor Ton and Tol transport systems
fig|6666666.229915.peg.1905 CDS JPZI01000011.1 61818 62435 3 + 618 Type II secretory pathway, pseudopilin PulG - none -
fig|6666666.229915.peg.1906 CDS JPZI01000011.1 62449 63165 1 + 717 Type II secretory pathway, component PulJ - none -
fig|6666666.229915.peg.1907 CDS JPZI01000011.1 63183 63854 3 + 672 FIG00696574: hypothetical protein - none -
fig|6666666.229915.peg.1908 CDS JPZI01000011.1 63832 64131 1 + 300 FIG00696353: hypothetical protein - none -
fig|6666666.229915.peg.1909 CDS JPZI01000011.1 64177 67566 1 + 3390 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) DNA repair, bacterial RecBCD pathway
fig|6666666.229915.peg.1910 CDS JPZI01000011.1 68012 67569 -2 - 444 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Ribosome biogenesis bacterial;
YrdC-YciO-Sua5 protein family
fig|6666666.229915.peg.1911 CDS JPZI01000011.1 68471 68022 -2 - 450 DNA polymerase III psi subunit (EC 2.7.7.7) - none -
fig|6666666.229915.peg.1912 CDS JPZI01000011.1 68527 69531 1 + 1005 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) RNA methylation
fig|6666666.229915.peg.1913 CDS JPZI01000011.1 70163 70705 2 + 543 hypothetical protein - none -
fig|6666666.229915.peg.1914 CDS JPZI01000011.1 70837 72099 1 + 1263 Serine hydroxymethyltransferase (EC 2.1.2.1) 5-FCL-like protein;
Glycine Biosynthesis;
Glycine and Serine Utilization;
Serine Biosynthesis;
YrdC-YciO-Sua5 protein family
fig|6666666.229915.peg.1915 CDS JPZI01000011.1 73205 73711 2 + 507 RTX toxin activating lysine-acyltransferase (EC 2.3.1.-) - none -
fig|6666666.229915.peg.1916 CDS JPZI01000011.1 73724 76879 2 + 3156 bifunctional hemolysin-adenylate cyclase precursor cAMP signaling in bacteria
fig|6666666.229915.peg.1917 CDS JPZI01000011.1 76946 79069 2 + 2124 Methionine ABC transporter ATP-binding protein Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229915.peg.1918 CDS JPZI01000011.1 79084 80517 1 + 1434 RTX toxin transporter, determinant D # Leukotoxin secretion protein D - none -
fig|6666666.229915.peg.1919 CDS JPZI01000011.1 80927 82807 2 + 1881 PTS system, mannitol-specific IIC component (EC 2.7.1.69) / PTS system, mannitol-specific IIB component (EC 2.7.1.69) / PTS system, mannitol-specific IIA component (EC 2.7.1.69) Mannitol Utilization;
Mannitol Utilization;
Mannitol Utilization
fig|6666666.229915.peg.1920 CDS JPZI01000011.1 82885 84033 1 + 1149 Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17) Mannitol Utilization
fig|6666666.229915.peg.1921 CDS JPZI01000011.1 84111 84623 3 + 513 Mannitol operon repressor Mannitol Utilization
fig|6666666.229915.peg.1922 CDS JPZI01000011.1 85737 84727 -3 - 1011 Myo-inositol 2-dehydrogenase 1 (EC 1.1.1.18) Inositol catabolism
fig|6666666.229915.peg.1923 CDS JPZI01000011.1 86636 85740 -2 - 897 Inosose dehydratase (EC 4.2.1.44) Inositol catabolism
fig|6666666.229915.peg.1924 CDS JPZI01000011.1 88638 86692 -3 - 1947 Epi-inositol hydrolase (EC 3.7.1.-) Inositol catabolism
fig|6666666.229915.peg.1925 CDS JPZI01000011.1 88947 90854 3 + 1908 5-keto-2-deoxygluconokinase (EC 2.7.1.92) / uncharacterized domain Inositol catabolism;
Inositol catabolism
fig|6666666.229915.peg.1926 CDS JPZI01000011.1 91727 90894 -2 - 834 Predicted transcriptional regulator of the myo-inositol catabolic operon Inositol catabolism
fig|6666666.229915.peg.1927 CDS JPZI01000011.1 91770 91901 3 + 132 hypothetical protein - none -
fig|6666666.229915.peg.1928 CDS JPZI01000011.1 92686 91856 -1 - 831 5-deoxy-glucuronate isomerase (EC 5.3.1.-) Inositol catabolism
fig|6666666.229915.peg.1929 CDS JPZI01000011.1 92949 93752 3 + 804 Inositol-1-monophosphatase (EC 3.1.3.25) - none -
fig|6666666.229915.peg.1930 CDS JPZI01000011.1 93770 95113 2 + 1344 putative hexose phosphate transport protein - none -
fig|6666666.229915.peg.1931 CDS JPZI01000011.1 95351 96859 2 + 1509 Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27) Inositol catabolism
fig|6666666.229915.peg.1932 CDS JPZI01000011.1 96950 98089 2 + 1140 Myo-inositol 2-dehydrogenase 2 (EC 1.1.1.18) Inositol catabolism
fig|6666666.229915.peg.1933 CDS JPZI01000011.1 98391 99329 3 + 939 Inositol transport system sugar-binding protein Inositol catabolism
fig|6666666.229915.peg.1934 CDS JPZI01000011.1 99495 100343 3 + 849 Inositol transport system sugar-binding protein Inositol catabolism
fig|6666666.229915.peg.1935 CDS JPZI01000011.1 100412 101917 2 + 1506 Inositol transport system ATP-binding protein Inositol catabolism
fig|6666666.229915.peg.1936 CDS JPZI01000011.1 101969 102922 2 + 954 Inositol transport system permease protein Inositol catabolism
fig|6666666.229915.peg.1937 CDS JPZI01000011.1 105625 103004 -1 - 2622 Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) 5-FCL-like protein;
Fermentations: Lactate;
Fermentations: Mixed acid;
Fermentations: Mixed acid;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229915.peg.1938 CDS JPZI01000011.1 108601 105974 -1 - 2628 Iron siderophore receptor protein - none -
fig|6666666.229915.peg.1939 CDS JPZI01000011.1 109797 108832 -3 - 966 Protein-export membrane protein SecF (TC 3.A.5.1.1) CBSS-211586.1.peg.2832
fig|6666666.229915.peg.1940 CDS JPZI01000011.1 111664 109814 -1 - 1851 Protein-export membrane protein SecD (TC 3.A.5.1.1) CBSS-211586.1.peg.2832
fig|6666666.229915.peg.1941 CDS JPZI01000011.1 111994 111695 -1 - 300 Preprotein translocase subunit YajC (TC 3.A.5.1.1) CBSS-211586.1.peg.2832
fig|6666666.229915.peg.1942 CDS JPZI01000011.1 112136 112261 2 + 126 hypothetical protein - none -
fig|6666666.229915.peg.1943 CDS JPZI01000011.1 113426 112281 -2 - 1146 tRNA-guanine transglycosylase (EC 2.4.2.29) CBSS-211586.1.peg.2832;
Queuosine-Archaeosine Biosynthesis;
Scaffold proteins for [4Fe-4S] cluster assembly (MRP family);
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229915.peg.1944 CDS JPZI01000011.1 113713 113832 1 + 120 hypothetical protein - none -
fig|6666666.229915.peg.1945 CDS JPZI01000011.1 113902 115038 1 + 1137 Periplasmic aromatic amino acid aminotransferase beta precursor (EC 2.6.1.57) Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229915.peg.1946 CDS JPZI01000011.1 116174 115083 -2 - 1092 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) CBSS-211586.1.peg.2832;
Queuosine-Archaeosine Biosynthesis;
Scaffold proteins for [4Fe-4S] cluster assembly (MRP family);
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229915.peg.1947 CDS JPZI01000011.1 116804 116265 -2 - 540 Cell division protein FtsZ (EC 3.4.24.-) Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ;
cell division core of larger cluster
fig|6666666.229915.peg.1948 CDS JPZI01000011.1 117579 116920 -3 - 660 ABC-type Fe3+-hydroxamate transport system, periplasmic component - none -
fig|6666666.229915.peg.1949 CDS JPZI01000011.1 119447 117699 -2 - 1749 hypothetical protein - none -
fig|6666666.229915.peg.1950 CDS JPZI01000011.1 121722 119440 -3 - 2283 Putative ATP /GTP binding protein - none -
fig|6666666.229915.peg.1951 CDS JPZI01000011.1 123579 121816 -3 - 1764 hypothetical protein - none -
fig|6666666.229915.peg.1952 CDS JPZI01000011.1 123913 123653 -1 - 261 hypothetical protein - none -
fig|6666666.229915.peg.1953 CDS JPZI01000011.1 124819 123926 -1 - 894 transcriptional regulator, putative - none -
fig|6666666.229915.peg.1954 CDS JPZI01000011.1 126730 125342 -1 - 1389 Putative protease - none -
fig|6666666.229915.peg.1955 CDS JPZI01000011.1 127150 126899 -1 - 252 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) Ammonia assimilation;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229915.peg.1956 CDS JPZI01000011.1 127539 127420 -3 - 120 hypothetical protein - none -
fig|6666666.229915.peg.1957 CDS JPZI01000011.1 127575 127913 3 + 339 conserved hypothetical protein - none -
fig|6666666.229915.peg.1958 CDS JPZI01000011.1 128271 127981 -3 - 291 StbE replicon stabilization toxin - none -
fig|6666666.229915.peg.1959 CDS JPZI01000011.1 128515 128261 -1 - 255 RelB/StbD replicon stabilization protein (antitoxin to RelE/StbE) Toxin-antitoxin replicon stabilization systems
fig|6666666.229915.peg.1960 CDS JPZI01000011.1 129721 128960 -1 - 762 DNA polymerase III epsilon subunit (EC 2.7.7.7) CBSS-228410.1.peg.134;
CBSS-342610.3.peg.1536
fig|6666666.229915.peg.1961 CDS JPZI01000011.1 129789 130256 3 + 468 Ribonuclease HI (EC 3.1.26.4) CBSS-228410.1.peg.134;
CBSS-342610.3.peg.1536;
Ribonuclease H
fig|6666666.229915.peg.1962 CDS JPZI01000011.1 131682 130315 -3 - 1368 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229915.peg.1963 CDS JPZI01000011.1 132790 131693 -1 - 1098 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) @ Histidinol-phosphate aminotransferase (EC 2.6.1.9) Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229915.peg.1964 CDS JPZI01000011.1 134224 132881 -1 - 1344 Phosphoserine aminotransferase (EC 2.6.1.52) Glycine and Serine Utilization;
Pyridoxin (Vitamin B6) Biosynthesis;
Serine Biosynthesis
fig|6666666.229915.peg.1965 CDS JPZI01000011.1 134424 134756 3 + 333 UPF0265 protein YeeX Broadly distributed proteins not in subsystems
fig|6666666.229915.peg.1966 CDS JPZI01000011.1 136500 134911 -3 - 1590 L-lactate permease Lactate utilization
fig|6666666.229915.peg.1967 CDS JPZI01000011.1 136618 136734 1 + 117 hypothetical protein - none -
fig|6666666.229915.peg.1968 CDS JPZI01000011.1 137884 136739 -1 - 1146 L-lactate dehydrogenase (EC 1.1.2.3) Lactate utilization;
Respiratory dehydrogenases 1
fig|6666666.229915.peg.1969 CDS JPZI01000011.1 138330 138184 -3 - 147 hypothetical protein - none -
fig|6666666.229915.peg.1970 CDS JPZI01000011.1 139456 138506 -1 - 951 Ribose-phosphate pyrophosphokinase (EC 2.7.6.1) A Gammaproteobacteria Cluster Relating to Translation;
Pentose phosphate pathway;
Transcription repair cluster
fig|6666666.229915.peg.1971 CDS JPZI01000011.1 140408 139497 -2 - 912 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148) A Gammaproteobacteria Cluster Relating to Translation;
Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.229915.peg.1972 CDS JPZI01000011.1 141031 140405 -1 - 627 Outer membrane lipoprotein LolB precursor - none -
fig|6666666.229915.peg.1973 CDS JPZI01000011.1 142369 141092 -1 - 1278 tRNA nucleotidyltransferase (EC 2.7.7.21) (EC 2.7.7.25) Polyadenylation bacterial;
tRNA nucleotidyltransferase
fig|6666666.229915.peg.1974 CDS JPZI01000011.1 142980 142369 -3 - 612 SH3 domain protein - none -
fig|6666666.229915.peg.1975 CDS JPZI01000011.1 144314 143049 -2 - 1266 Probable low-affinity inorganic phosphate transporter Phosphate metabolism
fig|6666666.229915.peg.1976 CDS JPZI01000011.1 145020 144340 -3 - 681 Phosphate transport regulator (distant homolog of PhoU) Phosphate metabolism
fig|6666666.229915.peg.1977 CDS JPZI01000011.1 145185 146339 3 + 1155 Adenylate cyclase (EC 4.6.1.1) cAMP signaling in bacteria
fig|6666666.229915.peg.1978 CDS JPZI01000011.1 146342 147715 2 + 1374 DNA repair protein RadA DNA repair, bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229915.peg.1979 CDS JPZI01000011.1 148552 149031 1 + 480 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229915.peg.1980 CDS JPZI01000011.1 149035 151779 1 + 2745 Cell division protein FtsK Bacterial Cell Division;
Bacterial Cytoskeleton;
Bacterial RNA-metabolizing Zn-dependent hydrolases;
CBSS-83333.1.peg.876
fig|6666666.229915.peg.1981 CDS JPZI01000011.1 151878 152495 3 + 618 Outer membrane lipoprotein carrier protein LolA CBSS-83333.1.peg.876;
Lipopolysaccharide assembly;
Lipoprotein sorting system
fig|6666666.229915.peg.1982 CDS JPZI01000011.1 152508 153848 3 + 1341 FIG065221: Holliday junction DNA helicase CBSS-83333.1.peg.876
fig|6666666.229915.peg.1983 CDS JPZI01000011.1 154039 154170 1 + 132 hypothetical protein - none -
fig|6666666.229915.peg.1984 CDS JPZI01000011.1 155895 154228 -3 - 1668 C4-dicarboxylate transporter DcuB - none -
fig|6666666.229915.peg.1985 CDS JPZI01000011.1 156203 157519 2 + 1317 Seryl-tRNA synthetase (EC 6.1.1.11) CBSS-326442.4.peg.1852;
Glycine and Serine Utilization;
tRNA aminoacylation, Ser
fig|6666666.229915.peg.1986 CDS JPZI01000011.1 158493 157597 -3 - 897 Cytidine deaminase (EC 3.5.4.5) Murein hydrolase regulation and cell death;
pyrimidine conversions;
tRNA modification Bacteria
fig|6666666.229915.peg.1987 CDS JPZI01000011.1 159713 158616 -2 - 1098 ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1) Polyamine Metabolism
fig|6666666.229915.peg.1988 CDS JPZI01000011.1 160617 159844 -3 - 774 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) Polyamine Metabolism
fig|6666666.229915.peg.1989 CDS JPZI01000011.1 161477 160617 -2 - 861 Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) Polyamine Metabolism
fig|6666666.229915.peg.1990 CDS JPZI01000011.1 162579 161461 -3 - 1119 Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) Polyamine Metabolism
fig|6666666.229915.peg.1991 CDS JPZI01000011.1 162843 164087 3 + 1245 Tripeptide aminopeptidase (EC 3.4.11.4) - none -
fig|6666666.229915.peg.1992 CDS JPZI01000011.1 165174 164176 -3 - 999 Gluconate utilization system Gnt-I transcriptional repressor D-gluconate and ketogluconates metabolism
fig|6666666.229915.peg.1993 CDS JPZI01000011.1 166047 165223 -3 - 825 Formate dehydrogenase chain D (EC 1.2.1.2) Formate hydrogenase
fig|6666666.229915.peg.1994 CDS JPZI01000011.1 166268 169378 2 + 3111 Formate dehydrogenase N alpha subunit (EC 1.2.1.2) @ selenocysteine-containing Formate dehydrogenase;
Formate hydrogenase
fig|6666666.229915.peg.1995 CDS JPZI01000011.1 169380 170312 3 + 933 Formate dehydrogenase O beta subunit (EC 1.2.1.2) Formate dehydrogenase;
Formate hydrogenase
fig|6666666.229915.peg.1996 CDS JPZI01000011.1 170305 171018 1 + 714 Formate dehydrogenase -O, gamma subunit (EC 1.2.1.2) Anaerobic respiratory reductases;
Formate hydrogenase
fig|6666666.229915.peg.1997 CDS JPZI01000011.1 171168 171284 3 + 117 hypothetical protein - none -
fig|6666666.229915.peg.1998 CDS JPZI01000011.1 173904 171619 -3 - 2286 [NiFe] hydrogenase metallocenter assembly protein HypF G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229915.peg.1999 CDS JPZI01000011.1 174254 174799 2 + 546 Hydrogenase-4 component A - none -
fig|6666666.229915.peg.2000 CDS JPZI01000011.1 174832 176853 1 + 2022 Hydrogenase-4 component B / Formate hydrogenlyase subunit 3 Formate hydrogenase
fig|6666666.229915.peg.2001 CDS JPZI01000011.1 176864 177826 2 + 963 Hydrogenase-4 component C - none -
fig|6666666.229915.peg.2002 CDS JPZI01000011.1 177839 179284 2 + 1446 Hydrogenase-4 component D - none -
fig|6666666.229915.peg.2003 CDS JPZI01000011.1 179295 179933 3 + 639 Hydrogenase-4 component E - none -
fig|6666666.229915.peg.2004 CDS JPZI01000011.1 179938 181476 1 + 1539 Hydrogenase-4 component F - none -
fig|6666666.229915.peg.2005 CDS JPZI01000011.1 181496 183226 2 + 1731 Formate hydrogenlyase subunit 5 Formate hydrogenase
fig|6666666.229915.peg.2006 CDS JPZI01000011.1 183240 183887 3 + 648 Formate hydrogenlyase complex 3 iron-sulfur protein; Formate hydrogenlyase subunit 6; Ni,Fe-hydrogenase III medium subunit Formate hydrogenase
fig|6666666.229915.peg.2007 CDS JPZI01000011.1 183884 184660 2 + 777 Formate hydrogenlyase subunit 7 Formate hydrogenase
fig|6666666.229915.peg.2008 CDS JPZI01000011.1 185084 185491 2 + 408 Formate hydrogenlyase transcriptional activator Formate hydrogenase
fig|6666666.229915.peg.2009 CDS JPZI01000011.1 185520 185942 3 + 423 Coenzyme F420 hydrogenase maturation protease (EC 3.4.24.-) Hydrogenases
fig|6666666.229915.peg.2010 CDS JPZI01000011.1 187156 186071 -1 - 1086 hypothetical protein - none -
fig|6666666.229915.peg.2011 CDS JPZI01000011.1 187384 189606 1 + 2223 Formate dehydrogenase H (EC 1.2.1.2) @ selenocysteine-containing Formate dehydrogenase
fig|6666666.229915.peg.2014 CDS JPZI01000011.1 190648 189776 -1 - 873 Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) TCA Cycle
fig|6666666.229915.peg.2015 CDS JPZI01000011.1 191828 190659 -2 - 1170 Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) TCA Cycle
fig|6666666.229915.peg.2016 CDS JPZI01000011.1 191842 191958 1 + 117 hypothetical protein - none -
fig|6666666.229915.peg.2017 CDS JPZI01000011.1 193258 192035 -1 - 1224 Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61) Dehydrogenase complexes;
TCA Cycle
fig|6666666.229915.peg.2018 CDS JPZI01000011.1 196191 193384 -3 - 2808 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) Dehydrogenase complexes;
TCA Cycle
fig|6666666.229915.peg.2019 CDS JPZI01000011.1 197049 196411 -3 - 639 Hypothetical metal-binding enzyme, YcbL homolog CBSS-228400.4.peg.1623
fig|6666666.229915.peg.2020 CDS JPZI01000011.1 197685 197125 -3 - 561 FIG001587: exported protein CBSS-228400.4.peg.1623
fig|6666666.229915.peg.2021 CDS JPZI01000011.1 199261 197750 -1 - 1512 L,D-transpeptidase YcbB CBSS-228400.4.peg.1623
fig|6666666.229915.peg.2022 CDS JPZI01000011.1 201396 199339 -3 - 2058 Tail-specific protease precursor (EC 3.4.21.102) - none -
fig|6666666.229915.peg.2023 CDS JPZI01000011.1 202078 201470 -1 - 609 ProQ: influences osmotic activation of compatible solute ProP - none -
fig|6666666.229915.peg.2024 CDS JPZI01000011.1 202369 203577 1 + 1209 Paraquat-inducible protein A Oxidative stress
fig|6666666.229915.peg.2025 CDS JPZI01000011.1 203540 206197 2 + 2658 Paraquat-inducible protein B Oxidative stress
fig|6666666.229915.peg.2026 CDS JPZI01000011.1 206274 206633 3 + 360 Mobile element protein - none -
fig|6666666.229915.peg.2027 CDS JPZI01000011.1 206654 207454 2 + 801 Mobile element protein - none -
fig|6666666.229915.peg.2028 CDS JPZI01000011.1 208078 207560 -1 - 519 Gluconokinase (EC 2.7.1.12) D-gluconate and ketogluconates metabolism;
Entner-Doudoroff Pathway
fig|6666666.229915.peg.2029 CDS JPZI01000011.1 208298 209647 2 + 1350 Low-affinity gluconate/H+ symporter GntU D-gluconate and ketogluconates metabolism
fig|6666666.229915.peg.2030 CDS JPZI01000011.1 209792 209664 -2 - 129 hypothetical protein - none -
fig|6666666.229915.peg.2031 CDS JPZI01000011.1 209820 211994 3 + 2175 ATP-dependent DNA helicase UvrD/PcrA DNA repair, bacterial UvrD and related helicases
fig|6666666.229915.peg.2032 CDS JPZI01000011.1 212955 212128 -3 - 828 DNA ligase (ATP) (EC 6.5.1.1) DNA ligases
fig|6666666.229915.peg.2033 CDS JPZI01000011.1 213157 213014 -1 - 144 hypothetical protein - none -
fig|6666666.229915.peg.2034 CDS JPZI01000011.1 213873 213130 -3 - 744 Probable transmembrane protein - none -
fig|6666666.229915.peg.2035 CDS JPZI01000011.1 214200 213946 -3 - 255 YoeB toxin protein Toxin-antitoxin replicon stabilization systems
fig|6666666.229915.peg.2036 CDS JPZI01000011.1 214448 214197 -2 - 252 YefM protein (antitoxin to YoeB) Toxin-antitoxin replicon stabilization systems
fig|6666666.229915.peg.2037 CDS JPZI01000011.1 215514 214558 -3 - 957 Polysaccharide polymerization protein - none -
fig|6666666.229915.peg.2038 CDS JPZI01000011.1 217034 215511 -2 - 1524 putative flippase - none -
fig|6666666.229915.peg.2039 CDS JPZI01000011.1 217165 217941 1 + 777 Lipopolysaccharide core biosynthesis glycosyltransferase WadA - none -
fig|6666666.229915.peg.2040 CDS JPZI01000011.1 217950 219143 3 + 1194 DNA for glycosyltransferase, lytic transglycosylase, dTDP-4-rhamnose reductase Rhamnose containing glycans
fig|6666666.229915.peg.2041 CDS JPZI01000011.1 219143 220024 2 + 882 Glycosyltransferase - none -
fig|6666666.229915.peg.2042 CDS JPZI01000011.1 220093 220896 1 + 804 Glucosyl-3-phosphoglycerate synthase (EC 2.4.1.266) - none -
fig|6666666.229915.peg.2043 CDS JPZI01000011.1 220898 222028 2 + 1131 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) Murein Hydrolases;
Peptidoglycan Biosynthesis
fig|6666666.229915.peg.2044 CDS JPZI01000011.1 222098 223165 2 + 1068 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229915.peg.2045 CDS JPZI01000011.1 223339 224115 1 + 777 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229915.peg.2046 CDS JPZI01000011.1 224116 224994 1 + 879 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229915.peg.2047 CDS JPZI01000011.1 224997 225536 3 + 540 dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229915.peg.2048 CDS JPZI01000011.1 225567 226358 3 + 792 O-antigen export system permease protein RfbD - none -
fig|6666666.229915.peg.2049 CDS JPZI01000011.1 226472 227098 2 + 627 Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40) Rhamnose containing glycans
fig|6666666.229915.peg.2050 CDS JPZI01000011.1 227095 228066 1 + 972 hypothetical protein - none -
fig|6666666.229915.peg.2051 CDS JPZI01000011.1 228066 229322 3 + 1257 DNA for glycosyltransferase, lytic transglycosylase, dTDP-4-rhamnose reductase Rhamnose containing glycans
fig|6666666.229915.peg.2052 CDS JPZI01000011.1 229294 229986 1 + 693 NDP-hexose 4-ketoreductase UrdR - none -
fig|6666666.229915.peg.2053 CDS JPZI01000011.1 229973 231313 2 + 1341 membrane protein, related to Actinobacillus protein (1944168) - none -
fig|6666666.229915.peg.2054 CDS JPZI01000011.1 231693 232397 3 + 705 Glycosyltransferase involved in cell wall biogenesis (EC 2.4.-.-) - none -
fig|6666666.229915.peg.2055 CDS JPZI01000011.1 232770 233651 3 + 882 Alpha-L-Rha alpha-1,3-L-rhamnosyltransferase (EC 2.4.1.-) Rhamnose containing glycans
fig|6666666.229915.peg.2056 CDS JPZI01000011.1 233648 234604 2 + 957 O antigen biosynthesis rhamnosyltransferase rfbN (EC 2.4.1.-) - none -
fig|6666666.229915.peg.2057 CDS JPZI01000011.1 234567 235985 3 + 1419 Undecaprenyl-phosphate galactosephosphotransferase (EC 2.7.8.6) - none -
fig|6666666.229915.peg.2058 CDS JPZI01000011.1 236537 237340 2 + 804 Exodeoxyribonuclease III (EC 3.1.11.2) DNA repair, bacterial
fig|6666666.229915.peg.2059 CDS JPZI01000011.1 237340 238134 1 + 795 DNA for glycosyltransferase, lytic transglycosylase, dTDP-4-rhamnose reductase Rhamnose containing glycans
fig|6666666.229915.peg.2060 CDS JPZI01000011.1 238159 239187 1 + 1029 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229915.peg.2061 CDS JPZI01000011.1 240005 239265 -2 - 741 FIG00698611: hypothetical protein - none -
fig|6666666.229915.peg.2062 CDS JPZI01000011.1 240930 240277 -3 - 654 GTP cyclohydrolase II (EC 3.5.4.25) Molybdenum cofactor biosynthesis;
Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster
fig|6666666.229915.peg.2063 CDS JPZI01000011.1 241013 241747 2 + 735 Phosphatidylglycerophosphatase B (EC 3.1.3.27) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Osmotic stress cluster
fig|6666666.229915.peg.2064 CDS JPZI01000011.1 241798 242712 1 + 915 ROK family Glucokinase with ambiguous substrate specificity - none -
fig|6666666.229915.peg.2065 CDS JPZI01000011.1 243353 242769 -2 - 585 Putative lipoprotein yceB precursor - none -
fig|6666666.229915.peg.2066 CDS JPZI01000011.1 243516 244076 3 + 561 unknown - none -
fig|6666666.229915.peg.2067 CDS JPZI01000011.1 244097 244882 2 + 786 serine/threonine protein kinase - none -
fig|6666666.229915.peg.2068 CDS JPZI01000011.1 244879 245007 1 + 129 hypothetical protein - none -
fig|6666666.229915.peg.2069 CDS JPZI01000011.1 246088 245222 -1 - 867 Acyl-CoA thioesterase II (EC 3.1.2.-) Acyl-CoA thioesterase II
fig|6666666.229915.peg.2070 CDS JPZI01000011.1 248081 246348 -2 - 1734 Transport ATP-binding protein CydC Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229915.peg.2071 CDS JPZI01000011.1 249844 248081 -1 - 1764 Transport ATP-binding protein CydD Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229915.peg.2072 CDS JPZI01000011.1 250902 249949 -3 - 954 Thioredoxin reductase (EC 1.8.1.9) Thioredoxin-disulfide reductase;
pyrimidine conversions
fig|6666666.229915.peg.2073 CDS JPZI01000011.1 251818 250961 -1 - 858 FIG000875: Thioredoxin domain-containing protein EC-YbbN - none -
fig|6666666.229915.peg.2074 CDS JPZI01000011.1 252969 252154 -3 - 816 Aldose 1-epimerase - none -
fig|6666666.229915.peg.2075 CDS JPZI01000011.1 253046 254983 2 + 1938 DinG family ATP-dependent helicase YoaA DNA repair, bacterial DinG and relatives
fig|6666666.229915.peg.2076 CDS JPZI01000011.1 254986 255708 1 + 723 TsaB protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Ribosome biogenesis bacterial;
YgjD and YeaZ;
YjeE;
YrdC-YciO-Sua5 protein family
fig|6666666.229915.peg.2077 CDS JPZI01000011.1 255740 256297 2 + 558 Starvation lipoprotein Slp paralog Carbon Starvation
fig|6666666.229915.peg.2078 CDS JPZI01000011.1 256340 258028 2 + 1689 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) - none -
fig|6666666.229915.peg.2079 CDS JPZI01000011.1 258095 259252 2 + 1158 Ribonuclease D (EC 3.1.26.3) tRNA processing
fig|6666666.229915.peg.2080 CDS JPZI01000011.1 260725 259340 -1 - 1386 Cytochrome c551 peroxidase (EC 1.11.1.5) Protection from Reactive Oxygen Species
fig|6666666.229915.peg.2081 CDS JPZI01000011.1 262527 263348 3 + 822 probable glucanotransferase (endo alpha-1,4 polygalactosaminidase related protein) - none -
fig|6666666.229915.peg.2082 CDS JPZI01000011.1 263874 264800 3 + 927 Putative stomatin/prohibitin-family membrane protease subunit YbbK - none -
fig|6666666.229915.peg.2083 CDS JPZI01000011.1 264823 265269 1 + 447 Putative activity regulator of membrane protease YbbK - none -
fig|6666666.229915.peg.2084 CDS JPZI01000011.1 265278 265889 3 + 612 NAD(P)H oxidoreductase YRKL (EC 1.6.99.-) @ Putative NADPH-quinone reductase (modulator of drug activity B) @ Flavodoxin 2 Flavodoxin;
Flavodoxin
fig|6666666.229915.peg.2085 CDS JPZI01000011.1 265889 266452 2 + 564 Putative oxidoreductase component of anaerobic dehydrogenases; Functional role page for Chaperone protein TorD - none -
fig|6666666.229915.peg.2086 CDS JPZI01000011.1 267444 266509 -3 - 936 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) KDO2-Lipid A biosynthesis
fig|6666666.229915.peg.2087 CDS JPZI01000011.1 267558 268988 3 + 1431 ADP-heptose synthase (EC 2.7.-.-) / D-glycero-beta-D-manno-heptose 7-phosphate kinase LOS core oligosaccharide biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.229915.peg.2088 CDS JPZI01000011.1 269412 269032 -3 - 381 Cysteine desulfurase CsdA-CsdE, sulfur acceptor protein CsdE - none -
fig|6666666.229915.peg.2089 CDS JPZI01000011.1 270608 269409 -2 - 1200 Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA Alanine biosynthesis;
mnm5U34 biosynthesis bacteria
fig|6666666.229915.peg.2090 CDS JPZI01000011.1 271114 270614 -1 - 501 Micrococcal nuclease (thermonuclease) homologs - none -
fig|6666666.229915.peg.2091 CDS JPZI01000011.1 271586 271945 2 + 360 Antiholin-like protein LrgA Murein hydrolase regulation and cell death
fig|6666666.229915.peg.2092 CDS JPZI01000011.1 271945 272637 1 + 693 LrgA-associated membrane protein LrgB Murein hydrolase regulation and cell death
fig|6666666.229915.peg.2093 CDS JPZI01000011.1 272639 273991 2 + 1353 Deoxyguanosinetriphosphate triphosphohydrolase (EC 3.1.5.1) - none -
fig|6666666.229915.peg.2094 CDS JPZI01000011.1 274321 274028 -1 - 294 FIG045511: hypothetical antitoxin (to FIG022160: hypothetical toxin) - none -
fig|6666666.229915.peg.2095 CDS JPZI01000011.1 274625 274323 -2 - 303 FIG022160: hypothetical toxin - none -
fig|6666666.229915.peg.2096 CDS JPZI01000011.1 274779 276722 3 + 1944 ABC transporter ATP-binding protein - none -
fig|6666666.229915.peg.2097 CDS JPZI01000011.1 276903 278639 3 + 1737 Inositol transport system ATP-binding protein Inositol catabolism
fig|6666666.229915.peg.2098 CDS JPZI01000011.1 278984 279253 2 + 270 Putative sugar phosphotransferase component II B - none -
fig|6666666.229915.peg.2099 CDS JPZI01000011.1 279277 280632 1 + 1356 FIG00732228: membrane protein - none -
fig|6666666.229915.peg.2100 CDS JPZI01000011.1 280643 281467 2 + 825 Transketolase, N-terminal section (EC 2.2.1.1) Pentose phosphate pathway
fig|6666666.229915.peg.2101 CDS JPZI01000011.1 281457 282401 3 + 945 Transketolase, C-terminal section (EC 2.2.1.1) Pentose phosphate pathway
fig|6666666.229915.peg.2102 CDS JPZI01000011.1 283520 282570 -2 - 951 Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p YrdC-YciO-Sua5 protein family
fig|6666666.229915.peg.2103 CDS JPZI01000011.1 283583 284089 2 + 507 FIG001674: hypothetical protein - none -
fig|6666666.229915.peg.2104 CDS JPZI01000011.1 286227 284086 -3 - 2142 Putative efflux (PET) family inner membrane protein YccS CBSS-83333.1.peg.946
fig|6666666.229915.peg.2105 CDS JPZI01000011.1 286709 286236 -2 - 474 Inner membrane protein YccF CBSS-83333.1.peg.946
fig|6666666.229915.peg.2106 CDS JPZI01000011.1 287167 286709 -1 - 459 Methylglyoxal synthase (EC 4.2.3.3) CBSS-83333.1.peg.946;
Methylglyoxal Metabolism
fig|6666666.229915.peg.2107 CDS JPZI01000011.1 287910 287230 -3 - 681 UPF0319 protein YccT precursor CBSS-83333.1.peg.946
fig|6666666.229915.peg.2108 CDS JPZI01000011.1 288055 288327 1 + 273 Acylphosphate phosphohydrolase (EC 3.6.1.7), putative Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229915.peg.2109 CDS JPZI01000011.1 289150 288302 -1 - 849 Manganese ABC transporter, inner membrane permease protein SitD - none -
fig|6666666.229915.peg.2110 CDS JPZI01000011.1 290004 289147 -3 - 858 Manganese ABC transporter, inner membrane permease protein SitC - none -
fig|6666666.229915.peg.2111 CDS JPZI01000011.1 290894 290004 -2 - 891 Manganese ABC transporter, ATP-binding protein SitB - none -
fig|6666666.229915.peg.2112 CDS JPZI01000011.1 291775 290894 -1 - 882 Manganese ABC transporter, periplasmic-binding protein SitA - none -
fig|6666666.229915.peg.2113 CDS JPZI01000011.1 292201 291872 -1 - 330 tRNA 2-thiouridine synthesizing protein E (EC 2.8.1.-) CBSS-326442.4.peg.1852;
Lipoic acid synthesis cluster;
Sulfite reduction-associated complex DsrMKJOP and co-clustering genes
fig|6666666.229915.peg.2114 CDS JPZI01000011.1 293048 292287 -2 - 762 Putative TEGT family carrier/transport protein CBSS-326442.4.peg.1852
fig|6666666.229915.peg.2115 CDS JPZI01000011.1 293403 293681 3 + 279 CRISPR-associated helicase Cas3 CRISPRs
fig|6666666.229915.peg.2116 CDS JPZI01000011.1 293777 296653 2 + 2877 helicase (Snf2/Rad54 family) - none -
fig|6666666.229915.peg.2117 CDS JPZI01000011.1 296654 298252 2 + 1599 hypothetical protein - none -
fig|6666666.229915.peg.2118 CDS JPZI01000011.1 298252 299943 1 + 1692 Type III restriction-modification system methylation subunit (EC 2.1.1.72) Restriction-Modification System
fig|6666666.229915.peg.2119 CDS JPZI01000011.1 299943 300998 3 + 1056 FIG074102: hypothetical protein - none -
fig|6666666.229915.peg.2120 CDS JPZI01000011.1 301126 303840 1 + 2715 Type III restriction-modification enzyme helicase subunit - none -
fig|6666666.229915.peg.2121 CDS JPZI01000011.1 303951 304625 3 + 675 CRISPR-associated protein, Cas5d family CRISPRs
fig|6666666.229915.peg.2122 CDS JPZI01000011.1 304622 306400 2 + 1779 CRISPR-associated protein, Csd1 family CRISPRs
fig|6666666.229915.peg.2123 CDS JPZI01000011.1 306413 307279 2 + 867 CRISPR-associated protein, Csd2 family CRISPRs
fig|6666666.229915.peg.2124 CDS JPZI01000011.1 307372 307857 1 + 486 O-methyltransferase - none -
fig|6666666.229915.peg.2125 CDS JPZI01000011.1 311583 309310 -3 - 2274 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) Methionine Biosynthesis
fig|6666666.229915.peg.2126 CDS JPZI01000011.1 311873 312805 2 + 933 Transcriptional activator MetR LysR-family proteins in Escherichia coli;
LysR-family proteins in Salmonella enterica Typhimurium;
Methionine Biosynthesis
fig|6666666.229915.peg.2127 CDS JPZI01000011.1 312810 313538 3 + 729 Branched-chain amino acid transport protein AzlC - none -
fig|6666666.229915.peg.2128 CDS JPZI01000011.1 313539 313871 3 + 333 Branched-chain amino acid transport protein azlD - none -
fig|6666666.229915.peg.2129 CDS JPZI01000011.1 316712 313938 -2 - 2775 Probable zinc protease pqqL (EC 3.4.99.-) - none -
fig|6666666.229915.peg.2130 CDS JPZI01000011.1 319155 316789 -3 - 2367 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229915.peg.2131 CDS JPZI01000011.1 319447 320337 1 + 891 Membrane protein LAPB - none -
fig|6666666.229915.peg.2132 CDS JPZI01000011.1 320334 321014 3 + 681 Cytidylate kinase (EC 2.7.4.25) pyrimidine conversions
fig|6666666.229915.peg.2133 CDS JPZI01000011.1 321112 322758 1 + 1647 SSU ribosomal protein S1p Cell division-ribosomal stress proteins cluster;
Ribosome SSU bacterial
fig|6666666.229915.peg.2134 CDS JPZI01000011.1 322820 323107 2 + 288 Integration host factor beta subunit DNA structural proteins, bacterial
fig|6666666.229915.peg.2135 CDS JPZI01000011.1 323208 323504 3 + 297 Inner membrane protein yciS - none -
fig|6666666.229915.peg.2136 CDS JPZI01000011.1 323504 324694 2 + 1191 Heat shock (predicted periplasmic) protein YciM, precursor Osmotic stress cluster
fig|6666666.229915.peg.2137 CDS JPZI01000011.1 324724 325416 1 + 693 Orotidine 5@1-phosphate decarboxylase (EC 4.1.1.23) De Novo Pyrimidine Synthesis;
Riboflavin synthesis cluster
fig|6666666.229915.peg.2138 CDS JPZI01000011.1 325422 325739 3 + 318 Translation initiation factor SUI1-related protein Translation initiation factors bacterial
fig|6666666.229915.peg.2139 CDS JPZI01000011.1 326125 325775 -1 - 351 FIG00782386: hypothetical protein - none -
fig|6666666.229915.peg.2140 CDS JPZI01000011.1 328868 326193 -2 - 2676 DNA gyrase subunit A (EC 5.99.1.3) Cell Division Subsystem including YidCD;
DNA gyrase subunits;
DNA replication cluster 1;
DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.229915.peg.2141 CDS JPZI01000011.1 329476 329036 -1 - 441 Ferric uptake regulation protein FUR Bacterial RNA-metabolizing Zn-dependent hydrolases;
Oxidative stress
fig|6666666.229915.peg.2142 CDS JPZI01000011.1 330019 329495 -1 - 525 Flavodoxin 1 Flavodoxin
fig|6666666.229915.peg.2143 CDS JPZI01000011.1 331237 330437 -1 - 801 Esterase ybfF (EC 3.1.-.-) - none -
fig|6666666.229915.peg.2144 CDS JPZI01000011.1 331324 331941 1 + 618 SeqA protein, negative modulator of initiation of replication - none -
fig|6666666.229915.peg.2145 CDS JPZI01000011.1 331947 333362 3 + 1416 O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229915.peg.2146 CDS JPZI01000011.1 333371 336694 2 + 3324 Potassium efflux system KefA protein / Small-conductance mechanosensitive channel Potassium homeostasis
fig|6666666.229915.peg.2147 CDS JPZI01000011.1 336717 337790 3 + 1074 Chorismate synthase (EC 4.2.3.5) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229915.peg.2148 CDS JPZI01000011.1 337812 338684 3 + 873 Murein endopeptidase - none -
fig|6666666.229915.peg.2149 CDS JPZI01000011.1 338688 339455 3 + 768 Putative membrane protein YfcA - none -
fig|6666666.229915.peg.2150 CDS JPZI01000011.1 339791 340747 2 + 957 Lipid A biosynthesis (KDO) 2-(lauroyl)-lipid IVA acyltransferase (EC 2.3.1.-) KDO2-Lipid A biosynthesis
fig|6666666.229915.peg.2151 CDS JPZI01000011.1 340769 341380 2 + 612 Adenine phosphoribosyltransferase (EC 2.4.2.7) Purine conversions;
cAMP signaling in bacteria
fig|6666666.229915.peg.2152 CDS JPZI01000011.1 341413 342816 1 + 1404 DNA polymerase III subunits gamma and tau (EC 2.7.7.7) DNA processing cluster
fig|6666666.229915.peg.2153 CDS JPZI01000011.1 342885 343457 3 + 573 DNA polymerase III subunits gamma and tau (EC 2.7.7.7) DNA processing cluster
fig|6666666.229915.peg.2154 CDS JPZI01000011.1 343460 344350 2 + 891 hypothetical protein - none -
fig|6666666.229915.peg.2155 CDS JPZI01000011.1 344493 345446 3 + 954 Glycosyltransferase - none -
fig|6666666.229915.peg.2156 CDS JPZI01000011.1 345449 346993 2 + 1545 hypothetical protein - none -
fig|6666666.229915.peg.2157 CDS JPZI01000011.1 347387 347034 -2 - 354 Putative translation initiation inhibitor, yjgF family - none -
fig|6666666.229915.peg.2158 CDS JPZI01000011.1 347528 348205 2 + 678 FIG00904286: hypothetical protein - none -
fig|6666666.229915.peg.2159 CDS JPZI01000011.1 348208 348921 1 + 714 hypothetical protein - none -
fig|6666666.229915.peg.2160 CDS JPZI01000011.1 349582 348971 -1 - 612 Glutathione S-transferase (EC 2.5.1.18) Glutathione: Non-redox reactions
fig|6666666.229915.peg.2161 CDS JPZI01000011.1 352116 349861 -3 - 2256 Topoisomerase IV subunit A (EC 5.99.1.-) DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.229915.peg.2162 CDS JPZI01000011.1 352326 352442 3 + 117 hypothetical protein - none -
fig|6666666.229915.peg.2163 CDS JPZI01000011.1 354380 352482 -2 - 1899 Topoisomerase IV subunit B (EC 5.99.1.-) DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.229915.peg.2164 CDS JPZI01000011.1 354883 355851 1 + 969 putative adhesin/invasin - none -
fig|6666666.229915.peg.2165 CDS JPZI01000011.1 357603 355954 -3 - 1650 ABC transporter ATP-binding protein - none -
fig|6666666.229915.peg.2166 CDS JPZI01000011.1 358007 358675 2 + 669 putative exported protein - none -
fig|6666666.229915.peg.2167 CDS JPZI01000011.1 358691 359725 2 + 1035 putative membrane protein - none -
fig|6666666.229915.peg.2168 CDS JPZI01000011.1 360337 362379 1 + 2043 Excinuclease ABC subunit B DNA repair, UvrABC system
fig|6666666.229915.peg.2169 CDS JPZI01000011.1 362606 363676 2 + 1071 Outer membrane protein A precursor Osmoregulation
fig|6666666.229915.peg.2170 CDS JPZI01000011.1 365260 363878 -1 - 1383 Outer membrane stress sensor protease DegQ, serine protease Periplasmic Stress Response;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229915.peg.2171 CDS JPZI01000011.1 365323 365493 1 + 171 hypothetical protein - none -
fig|6666666.229915.peg.2172 CDS JPZI01000011.1 365861 365451 -2 - 411 probable membrane protein YPO3565 - none -
fig|6666666.229915.peg.2173 CDS JPZI01000011.1 367793 366030 -2 - 1764 FIG00696060: hypothetical protein - none -
fig|6666666.229915.peg.2174 CDS JPZI01000011.1 369089 367884 -2 - 1206 Mannose-6-phosphate isomerase (EC 5.3.1.8) Mannose Metabolism
fig|6666666.229915.peg.2175 CDS JPZI01000011.1 369265 369603 1 + 339 FIG00904093: hypothetical protein - none -
fig|6666666.229915.peg.2176 CDS JPZI01000011.1 369796 371289 1 + 1494 PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69) Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism;
Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229915.peg.2177 CDS JPZI01000011.1 372045 371347 -3 - 699 FIG005121: SAM-dependent methyltransferase (EC 2.1.1.-) CBSS-228410.1.peg.134;
CBSS-342610.3.peg.1536;
Glutathione: Non-redox reactions
fig|6666666.229915.peg.2178 CDS JPZI01000011.1 372066 372767 3 + 702 Hydroxyacylglutathione hydrolase (EC 3.1.2.6) CBSS-228410.1.peg.134;
CBSS-342610.3.peg.1536;
Glutathione: Non-redox reactions;
Methylglyoxal Metabolism
fig|6666666.229915.peg.2179 CDS JPZI01000011.1 372958 374262 1 + 1305 Glutamyl-tRNA reductase (EC 1.2.1.70) A Gammaproteobacteria Cluster Relating to Translation;
Heme and Siroheme Biosynthesis
fig|6666666.229915.peg.2180 CDS JPZI01000011.1 374324 375547 2 + 1224 N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family Chitin and N-acetylglucosamine utilization
fig|6666666.229915.peg.2181 CDS JPZI01000011.1 376926 376282 -3 - 645 Adenylate kinase (EC 2.7.4.3) Purine conversions
fig|6666666.229915.peg.2182 CDS JPZI01000011.1 377062 376937 -1 - 126 hypothetical protein - none -
fig|6666666.229915.peg.2183 CDS JPZI01000011.1 378240 377059 -3 - 1182 AmpG permease Recycling of Peptidoglycan Amino Acids
fig|6666666.229915.peg.2184 CDS JPZI01000011.1 378702 378361 -3 - 342 [NiFe] hydrogenase nickel incorporation protein HybF NiFe hydrogenase maturation
fig|6666666.229915.peg.2185 CDS JPZI01000011.1 379724 378708 -2 - 1017 UDP-glucose 4-epimerase (EC 5.1.3.2) Lactose and Galactose Uptake and Utilization;
Rhamnose containing glycans
fig|6666666.229915.peg.2186 CDS JPZI01000011.1 379919 380305 2 + 387 Integral membrane protein - none -
fig|6666666.229915.peg.2187 CDS JPZI01000011.1 380435 381766 2 + 1332 Guanine-hypoxanthine permease Purine Utilization
fig|6666666.229915.peg.2188 CDS JPZI01000011.1 383130 381820 -3 - 1311 tRNA(Ile)-lysidine synthetase (EC 6.3.4.19) Cell division-ribosomal stress proteins cluster;
Folate biosynthesis cluster;
tRNA modification Bacteria;
tRNA processing;
tRNAmodification position 34
fig|6666666.229915.peg.2189 CDS JPZI01000011.1 384031 383174 -1 - 858 Pyridoxal kinase (EC 2.7.1.35) Pyridoxin (Vitamin B6) Biosynthesis
fig|6666666.229915.peg.2190 CDS JPZI01000011.1 385046 384093 -2 - 954 Acetyl-coenzyme A carboxyl transferase alpha chain (EC 6.4.1.2) Fatty Acid Biosynthesis FASII
fig|6666666.229915.peg.2191 CDS JPZI01000011.1 385128 385265 3 + 138 hypothetical protein - none -
fig|6666666.229915.peg.2192 CDS JPZI01000011.1 385891 385712 -1 - 180 hypothetical protein - none -
fig|6666666.229915.peg.2193 CDS JPZI01000011.1 386271 386128 -3 - 144 hypothetical protein - none -
fig|6666666.229915.peg.2194 CDS JPZI01000011.1 386638 386760 1 + 123 hypothetical protein - none -
fig|6666666.229915.peg.2195 CDS JPZI01000011.1 386741 387283 2 + 543 Prophage lysozyme (EC 3.2.1.17); Phage lysin - none -
fig|6666666.229915.peg.2196 CDS JPZI01000011.1 387385 387603 1 + 219 auxillary lytic protein - none -
fig|6666666.229915.peg.2197 CDS JPZI01000011.1 387923 388489 2 + 567 Phage terminase, small subunit Phage packaging machinery
fig|6666666.229915.peg.2198 CDS JPZI01000011.1 388509 389891 3 + 1383 Phage terminase, large subunit Phage packaging machinery
fig|6666666.229915.peg.2199 CDS JPZI01000011.1 389893 390375 1 + 483 Phage protein - none -
fig|6666666.229915.peg.2200 CDS JPZI01000011.1 390353 391204 2 + 852 Phage protein - none -
fig|6666666.229915.peg.2201 CDS JPZI01000011.1 391254 392552 3 + 1299 Plasmid-related protein - none -
fig|6666666.229915.peg.2202 CDS JPZI01000011.1 393073 393192 1 + 120 hypothetical protein - none -
fig|6666666.229915.peg.2203 CDS JPZI01000011.1 393405 393923 3 + 519 Phage antirepressor protein #of cryptic prophage CP-933M - none -
fig|6666666.229915.peg.2204 CDS JPZI01000011.1 393968 395074 2 + 1107 Uncharacterized protein conserved in bacteria - none -
fig|6666666.229915.peg.2205 CDS JPZI01000011.1 395088 395537 3 + 450 Phage protein - none -
fig|6666666.229915.peg.2206 CDS JPZI01000011.1 395548 396462 1 + 915 hypothetical protein - none -
fig|6666666.229915.peg.2207 CDS JPZI01000011.1 396473 396832 2 + 360 hypothetical protein - none -
fig|6666666.229915.peg.2208 CDS JPZI01000011.1 396833 397279 2 + 447 Phage protein - none -
fig|6666666.229915.peg.2209 CDS JPZI01000011.1 397276 397647 1 + 372 hypothetical protein - none -
fig|6666666.229915.peg.2210 CDS JPZI01000011.1 398197 397847 -1 - 351 phage-related putative DNA-binding protein - none -
fig|6666666.229915.peg.2211 CDS JPZI01000011.1 398539 398201 -1 - 339 hypothetical protein - none -
fig|6666666.229915.peg.2212 CDS JPZI01000011.1 399852 399022 -3 - 831 FIG00697497: hypothetical protein - none -
fig|6666666.229915.peg.2213 CDS JPZI01000011.1 400153 399890 -1 - 264 putative cytoplasmic protein - none -
fig|6666666.229915.peg.2214 CDS JPZI01000011.1 403209 400426 -3 - 2784 FIG00696772: hypothetical protein - none -
fig|6666666.229915.peg.2215 CDS JPZI01000011.1 403415 403209 -2 - 207 FIG00697022: hypothetical protein - none -
fig|6666666.229915.peg.2216 CDS JPZI01000011.1 403664 403419 -2 - 246 hypothetical protein - none -
fig|6666666.229915.peg.2217 CDS JPZI01000011.1 404485 403676 -1 - 810 Phage FAD/FMN-containing dehydrogenase - none -
fig|6666666.229915.peg.2218 CDS JPZI01000011.1 406228 404549 -1 - 1680 FIG00698772: hypothetical protein - none -
fig|6666666.229915.peg.2219 CDS JPZI01000011.1 407215 406232 -1 - 984 Phage protein - none -
fig|6666666.229915.peg.2220 CDS JPZI01000011.1 408171 407215 -3 - 957 Phage protein - none -
fig|6666666.229915.peg.2221 CDS JPZI01000011.1 411463 408179 -1 - 3285 Phage tail length tape-measure protein Phage tail proteins;
Phage tail proteins 2
fig|6666666.229915.peg.2222 CDS JPZI01000011.1 411476 411691 2 + 216 hypothetical protein - none -
fig|6666666.229915.peg.2223 CDS JPZI01000011.1 411894 411706 -3 - 189 hypothetical protein - none -
fig|6666666.229915.peg.2224 CDS JPZI01000011.1 412322 411897 -2 - 426 Phage protein - none -
fig|6666666.229915.peg.2225 CDS JPZI01000011.1 413153 412407 -2 - 747 Phage protein - none -
fig|6666666.229915.peg.2226 CDS JPZI01000011.1 413334 413140 -3 - 195 hypothetical protein - none -
fig|6666666.229915.peg.2227 CDS JPZI01000011.1 413770 413336 -1 - 435 Mu-like prophage FluMu protein gp37 - none -
fig|6666666.229915.peg.2228 CDS JPZI01000011.1 414177 413770 -3 - 408 Mu-like prophage protein GP36 - none -
fig|6666666.229915.peg.2229 CDS JPZI01000011.1 414608 414177 -2 - 432 hypothetical protein - none -
fig|6666666.229915.peg.2230 CDS JPZI01000011.1 415611 414685 -3 - 927 Phage major capsid protein Phage capsid proteins
fig|6666666.229915.peg.2231 CDS JPZI01000011.1 416690 415611 -2 - 1080 Mu-like prophage FluMu I protein - none -
fig|6666666.229915.peg.2232 CDS JPZI01000011.1 417311 416868 -2 - 444 G protein - none -
fig|6666666.229915.peg.2233 CDS JPZI01000011.1 418743 417427 -3 - 1317 Phage (Mu-like) virion morphogenesis protein - none -
fig|6666666.229915.peg.2234 CDS JPZI01000011.1 420328 418751 -1 - 1578 Mu-like prophage FluMu protein gp29 - none -
fig|6666666.229915.peg.2235 CDS JPZI01000011.1 421948 420338 -1 - 1611 FIG00698398: hypothetical protein - none -
fig|6666666.229915.peg.2236 CDS JPZI01000011.1 422517 421948 -3 - 570 Phage terminase small subunit Phage packaging machinery
fig|6666666.229915.peg.2237 CDS JPZI01000011.1 422839 422540 -1 - 300 FIG00638990: hypothetical protein - none -
fig|6666666.229915.peg.2238 CDS JPZI01000011.1 423178 422843 -1 - 336 Mu-like phage gp25 - none -
fig|6666666.229915.peg.2239 CDS JPZI01000011.1 423393 423175 -3 - 219 hypothetical protein - none -
fig|6666666.229915.peg.2240 CDS JPZI01000011.1 423541 423386 -1 - 156 hypothetical protein - none -
fig|6666666.229915.peg.2241 CDS JPZI01000011.1 423800 423513 -2 - 288 hypothetical protein - none -
fig|6666666.229915.peg.2242 CDS JPZI01000011.1 424024 423797 -1 - 228 FIG00696851: hypothetical protein - none -
fig|6666666.229915.peg.2243 CDS JPZI01000011.1 424152 424024 -3 - 129 hypothetical protein - none -
fig|6666666.229915.peg.2244 CDS JPZI01000011.1 424713 424168 -3 - 546 Negative regulator of beta-lactamase expression Beta-lactamase
fig|6666666.229915.peg.2245 CDS JPZI01000011.1 425212 424793 -1 - 420 Mu-like phage C protein, possible positive regulator of late transcription - none -
fig|6666666.229915.peg.2246 CDS JPZI01000011.1 425670 425209 -3 - 462 hypothetical protein - none -
fig|6666666.229915.peg.2247 CDS JPZI01000011.1 426193 425648 -1 - 546 Translation initiation factor 2 CBSS-138119.3.peg.2719;
NusA-TFII Cluster;
Translation initiation factors bacterial;
Universal GTPases
fig|6666666.229915.peg.2248 CDS JPZI01000011.1 426654 426535 -3 - 120 hypothetical protein - none -
fig|6666666.229915.peg.2249 CDS JPZI01000011.1 427141 426815 -1 - 327 hypothetical protein - none -
fig|6666666.229915.peg.2250 CDS JPZI01000011.1 427282 427157 -1 - 126 hypothetical protein - none -
fig|6666666.229915.peg.2251 CDS JPZI01000011.1 427380 427249 -3 - 132 hypothetical protein - none -
fig|6666666.229915.peg.2252 CDS JPZI01000011.1 428046 427486 -3 - 561 hypothetical protein - none -
fig|6666666.229915.peg.2253 CDS JPZI01000011.1 428310 428065 -3 - 246 hypothetical protein - none -
fig|6666666.229915.peg.2254 CDS JPZI01000011.1 428869 428321 -1 - 549 hypothetical protein - none -
fig|6666666.229915.peg.2255 CDS JPZI01000011.1 429079 428960 -1 - 120 hypothetical protein - none -
fig|6666666.229915.peg.2256 CDS JPZI01000011.1 429285 429082 -3 - 204 hypothetical protein - none -
fig|6666666.229915.peg.2257 CDS JPZI01000011.1 429629 429429 -2 - 201 hypothetical protein - none -
fig|6666666.229915.peg.2258 CDS JPZI01000011.1 429835 429632 -1 - 204 hypothetical protein - none -
fig|6666666.229915.peg.2259 CDS JPZI01000011.1 430469 429846 -2 - 624 hypothetical protein - none -
fig|6666666.229915.peg.2260 CDS JPZI01000011.1 430715 430485 -2 - 231 hypothetical protein - none -
fig|6666666.229915.peg.2261 CDS JPZI01000011.1 431632 430712 -1 - 921 Mu phage DNA transposition protein B - none -
fig|6666666.229915.peg.2262 CDS JPZI01000011.1 433675 431666 -1 - 2010 Phage transposase - none -
fig|6666666.229915.peg.2263 CDS JPZI01000011.1 433997 433719 -2 - 279 possible DNA-binding protein - none -
fig|6666666.229915.peg.2264 CDS JPZI01000011.1 434487 434900 3 + 414 transcriptional regulatory protein - none -
fig|6666666.229915.rna.1 RNA JPZI01000001.1 19951 20041 1 + 91 tRNA-Ser-GCT - none -
fig|6666666.229915.rna.2 RNA JPZI01000001.1 20062 20135 1 + 74 tRNA-Arg-ACG tRNAs
fig|6666666.229915.rna.3 RNA JPZI01000001.1 20194 20267 1 + 74 tRNA-Arg-ACG tRNAs
fig|6666666.229915.rna.4 RNA JPZI01000002.1 72402 72488 3 + 87 tRNA-Ser-GGA tRNAs
fig|6666666.229915.rna.5 RNA JPZI01000002.1 92310 92238 -3 - 73 tRNA-Trp-CCA tRNAs
fig|6666666.229915.rna.6 RNA JPZI01000002.1 92421 92348 -3 - 74 tRNA-Asp-GTC - none -
fig|6666666.229915.rna.7 RNA JPZI01000002.1 92547 92428 -3 - 120 5S RNA - none -
fig|6666666.229915.rna.8 RNA JPZI01000003.1 162340 162267 -1 - 74 tRNA-Val-GAC tRNAs
fig|6666666.229915.rna.9 RNA JPZI01000004.1 66601 66691 1 + 91 tRNA-SeC(p)-TCA - none -
fig|6666666.229915.rna.10 RNA JPZI01000004.1 354959 354887 -2 - 73 tRNA-Val-TAC - none -
fig|6666666.229915.rna.11 RNA JPZI01000004.1 355062 354990 -3 - 73 tRNA-Val-TAC - none -
fig|6666666.229915.rna.12 RNA JPZI01000004.1 355176 355104 -3 - 73 tRNA-Val-TAC - none -
fig|6666666.229915.rna.13 RNA JPZI01000004.1 356985 357057 3 + 73 tRNA-Ala-GGC tRNAs
fig|6666666.229915.rna.14 RNA JPZI01000004.1 358577 358503 -2 - 75 tRNA-Leu-CAA tRNAs
fig|6666666.229915.rna.15 RNA JPZI01000004.1 539531 539604 2 + 74 tRNA-Met-CAT - none -
fig|6666666.229915.rna.16 RNA JPZI01000006.1 31911 31983 3 + 73 tRNA-Gly-GCC tRNAs
fig|6666666.229915.rna.17 RNA JPZI01000006.1 31988 32071 2 + 84 tRNA-Leu-TAA - none -
fig|6666666.229915.rna.18 RNA JPZI01000006.1 83398 83470 1 + 73 tRNA-Lys-TTT - none -
fig|6666666.229915.rna.19 RNA JPZI01000006.1 136799 136716 -2 - 84 tRNA-Leu-CAG tRNAs
fig|6666666.229915.rna.20 RNA JPZI01000006.1 166604 166522 -2 - 83 tRNA-Leu-GAG tRNAs
fig|6666666.229915.rna.21 RNA JPZI01000006.1 236954 237027 2 + 74 tRNA-Met-CAT - none -
fig|6666666.229915.rna.22 RNA JPZI01000006.1 266353 266425 1 + 73 tRNA-Thr-TGT - none -
fig|6666666.229915.rna.23 RNA JPZI01000006.1 266459 266540 2 + 82 tRNA-Tyr-GTA - none -
fig|6666666.229915.rna.24 RNA JPZI01000006.1 266584 266655 1 + 72 tRNA-Gly-TCC - none -
fig|6666666.229915.rna.25 RNA JPZI01000006.1 266662 266734 1 + 73 tRNA-Thr-GGT - none -
fig|6666666.229915.rna.26 RNA JPZI01000006.1 349212 349140 -3 - 73 tRNA-Asn-GTT - none -
fig|6666666.229915.rna.27 RNA JPZI01000006.1 349292 349220 -2 - 73 tRNA-Phe-GAA tRNAs
fig|6666666.229915.rna.28 RNA JPZI01000006.1 378024 378097 3 + 74 tRNA-Pro-TGG - none -
fig|6666666.229915.rna.29 RNA JPZI01000006.1 378134 378207 2 + 74 tRNA-Arg-TCT - none -
fig|6666666.229915.rna.30 RNA JPZI01000007.1 20892 20820 -3 - 73 tRNA-Gly-GCC tRNAs
fig|6666666.229915.rna.31 RNA JPZI01000010.1 17642 17715 2 + 74 tRNA-Met-CAT - none -
fig|6666666.229915.rna.32 RNA JPZI01000010.1 150012 150085 3 + 74 tRNA-Arg-CCG tRNAs
fig|6666666.229915.rna.33 RNA JPZI01000010.1 150126 150198 3 + 73 tRNA-His-GTG - none -
fig|6666666.229915.rna.34 RNA JPZI01000010.1 150204 150277 3 + 74 tRNA-Pro-TGG - none -
fig|6666666.229915.rna.35 RNA JPZI01000011.1 1288 1218 -1 - 71 tRNA-Cys-GCA tRNAs
fig|6666666.229915.rna.36 RNA JPZI01000011.1 1372 1300 -1 - 73 tRNA-Gly-GCC tRNAs
fig|6666666.229915.rna.37 RNA JPZI01000011.1 8746 8832 1 + 87 tRNA-Ser-TGA - none -
fig|6666666.229915.rna.38 RNA JPZI01000011.1 61427 61499 2 + 73 tRNA-Lys-TTT - none -
fig|6666666.229915.rna.39 RNA JPZI01000011.1 61529 61601 2 + 73 tRNA-Lys-TTT - none -
fig|6666666.229915.rna.40 RNA JPZI01000011.1 61629 61702 3 + 74 tRNA-Lys-CTT - none -
fig|6666666.229915.rna.41 RNA JPZI01000011.1 128768 128695 -2 - 74 tRNA-Asp-GTC - none -
fig|6666666.229915.rna.42 RNA JPZI01000011.1 128867 128794 -2 - 74 tRNA-Asp-GTC - none -
fig|6666666.229915.rna.43 RNA JPZI01000011.1 271293 271211 -3 - 83 tRNA-Leu-CAA tRNAs
fig|6666666.229915.rna.44 RNA JPZI01000011.1 359934 359862 -3 - 73 tRNA-Asn-GTT - none -
fig|6666666.229915.rna.45 RNA JPZI01000011.1 375784 375857 1 + 74 tRNA-Met-CAT - none -
fig|6666666.229915.rna.46 RNA JPZI01000011.1 375866 375947 2 + 82 tRNA-Leu-TAG - none -
fig|6666666.229915.rna.47 RNA JPZI01000011.1 375980 376051 2 + 72 tRNA-Gln-TTG - none -
fig|6666666.229915.rna.48 RNA JPZI01000011.1 376092 376163 3 + 72 tRNA-Gln-TTG - none -