fig|6666666.229917.peg.1 CDS AJMH02000001.1 618 115 -3 - 504 Mercuric resistance operon regulatory protein - none -
fig|6666666.229917.peg.2 CDS AJMH02000001.1 957 646 -3 - 312 Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives DNA replication cluster 1
fig|6666666.229917.peg.3 CDS AJMH02000001.1 924 1052 3 + 129 hypothetical protein - none -
fig|6666666.229917.peg.4 CDS AJMH02000001.1 1049 1366 2 + 318 hypothetical protein - none -
fig|6666666.229917.peg.5 CDS AJMH02000001.1 1376 4138 2 + 2763 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) - none -
fig|6666666.229917.peg.6 CDS AJMH02000001.1 4215 4619 3 + 405 Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-) Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229917.peg.7 CDS AJMH02000001.1 6145 5111 -1 - 1035 DNA polymerase III delta subunit (EC 2.7.7.7) CBSS-208964.1.peg.3988
fig|6666666.229917.peg.8 CDS AJMH02000001.1 6648 6145 -3 - 504 LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B) CBSS-208964.1.peg.3988;
KDO2-Lipid A biosynthesis;
Lipopolysaccharide assembly
fig|6666666.229917.peg.9 CDS AJMH02000001.1 6637 6765 1 + 129 hypothetical protein - none -
fig|6666666.229917.peg.10 CDS AJMH02000001.1 9378 6790 -3 - 2589 Leucyl-tRNA synthetase (EC 6.1.1.4) CBSS-208964.1.peg.3988;
tRNA aminoacylation, Leu
fig|6666666.229917.peg.11 CDS AJMH02000001.1 9526 9356 -1 - 171 hypothetical protein - none -
fig|6666666.229917.peg.12 CDS AJMH02000001.1 9614 9498 -2 - 117 hypothetical protein - none -
fig|6666666.229917.peg.13 CDS AJMH02000001.1 10126 9569 -1 - 558 FIG00696423: hypothetical protein - none -
fig|6666666.229917.peg.14 CDS AJMH02000001.1 10447 10154 -1 - 294 nucleotidyltransferase - none -
fig|6666666.229917.peg.15 CDS AJMH02000001.1 10850 10431 -2 - 420 nucleotidyltransferase substrate binding protein, HI0074 family - none -
fig|6666666.229917.peg.16 CDS AJMH02000001.1 11768 10941 -2 - 828 Bis(5@1-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) - none -
fig|6666666.229917.peg.17 CDS AJMH02000001.1 12647 11784 -2 - 864 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase (EC 2.1.1.182) RNA methylation;
Ribosome biogenesis bacterial
fig|6666666.229917.peg.18 CDS AJMH02000001.1 13657 12725 -1 - 933 Survival protein SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA) (EC 5.2.1.8) Lipopolysaccharide assembly;
Peptidyl-prolyl cis-trans isomerase;
Periplasmic Stress Response
fig|6666666.229917.peg.19 CDS AJMH02000001.1 14258 13722 -2 - 537 Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR De Novo Pyrimidine Synthesis;
De Novo Pyrimidine Synthesis;
pyrimidine conversions
fig|6666666.229917.peg.20 CDS AJMH02000001.1 14807 14397 -2 - 411 Copper metallochaperone, bacterial analog of Cox17 protein Biogenesis of cytochrome c oxidases
fig|6666666.229917.peg.21 CDS AJMH02000001.1 14920 15531 1 + 612 FIG002903: a protein of unknown function perhaps involved in purine metabolism CBSS-354.1.peg.876
fig|6666666.229917.peg.22 CDS AJMH02000001.1 15555 16922 3 + 1368 Adenylosuccinate lyase (EC 4.3.2.2) CBSS-354.1.peg.876;
Purine conversions
fig|6666666.229917.peg.23 CDS AJMH02000001.1 17038 17151 1 + 114 hypothetical protein - none -
fig|6666666.229917.peg.24 CDS AJMH02000001.1 17241 17891 3 + 651 Sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140) - none -
fig|6666666.229917.peg.25 CDS AJMH02000001.1 18136 18005 -1 - 132 Transcriptional regulator, MerR family Cobalt-zinc-cadmium resistance
fig|6666666.229917.peg.26 CDS AJMH02000001.1 18412 18140 -1 - 273 Transcriptional regulator, MerR family Cobalt-zinc-cadmium resistance
fig|6666666.229917.peg.27 CDS AJMH02000001.1 18550 19674 1 + 1125 S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) Glutathione-dependent pathway of formaldehyde detoxification
fig|6666666.229917.peg.28 CDS AJMH02000001.1 19689 20519 3 + 831 S-formylglutathione hydrolase (EC 3.1.2.12) Glutathione-dependent pathway of formaldehyde detoxification
fig|6666666.229917.peg.29 CDS AJMH02000001.1 20872 21006 1 + 135 hypothetical protein - none -
fig|6666666.229917.peg.30 CDS AJMH02000001.1 22538 21159 -2 - 1380 Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1) Bacterial signal recognition particle (SRP)
fig|6666666.229917.peg.31 CDS AJMH02000001.1 22692 23489 3 + 798 FIG001154: CcsA-related protein - none -
fig|6666666.229917.peg.32 CDS AJMH02000001.1 23564 24826 2 + 1263 Magnesium and cobalt efflux protein CorC CBSS-56780.10.peg.1536;
Copper homeostasis: copper tolerance;
Glycyl-tRNA synthetase containing cluster;
Magnesium transport;
tRNA-methylthiotransferase containing cluster
fig|6666666.229917.peg.33 CDS AJMH02000001.1 25001 25471 2 + 471 Ferric siderophore transport system, biopolymer transport protein ExbB Ton and Tol transport systems
fig|6666666.229917.peg.34 CDS AJMH02000001.1 25475 25921 2 + 447 Biopolymer transport protein ExbD/TolR Ton and Tol transport systems
fig|6666666.229917.peg.35 CDS AJMH02000001.1 25931 26689 2 + 759 Ferric siderophore transport system, periplasmic binding protein TonB Hemin transport system;
Ton and Tol transport systems
fig|6666666.229917.peg.36 CDS AJMH02000001.1 27946 28200 1 + 255 hypothetical protein - none -
fig|6666666.229917.peg.37 CDS AJMH02000001.1 28529 28708 2 + 180 hypothetical protein - none -
fig|6666666.229917.peg.38 CDS AJMH02000001.1 28689 29837 3 + 1149 cell filamentation-like protein - none -
fig|6666666.229917.peg.39 CDS AJMH02000001.1 30246 30395 3 + 150 hypothetical protein - none -
fig|6666666.229917.peg.40 CDS AJMH02000001.1 31180 31320 1 + 141 hypothetical protein - none -
fig|6666666.229917.peg.41 CDS AJMH02000001.1 31455 33875 3 + 2421 Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-) Anaerobic respiratory reductases
fig|6666666.229917.peg.42 CDS AJMH02000001.1 33886 34503 1 + 618 Anaerobic dimethyl sulfoxide reductase chain B (EC 1.8.5.3) - none -
fig|6666666.229917.peg.43 CDS AJMH02000001.1 34505 35344 2 + 840 Anaerobic dimethyl sulfoxide reductase chain C (EC 1.8.5.3) - none -
fig|6666666.229917.peg.44 CDS AJMH02000001.1 35392 36006 1 + 615 Putative oxidoreductase component of anaerobic dehydrogenases; Functional role page for Chaperone protein TorD - none -
fig|6666666.229917.peg.45 CDS AJMH02000001.1 36020 36181 2 + 162 Ferredoxin-type protein NapF (periplasmic nitrate reductase) - none -
fig|6666666.229917.peg.46 CDS AJMH02000001.1 36373 37278 1 + 906 Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14) Glycyl-tRNA synthetase;
Glycyl-tRNA synthetase containing cluster;
tRNA aminoacylation, Gly
fig|6666666.229917.peg.47 CDS AJMH02000001.1 37328 37588 2 + 261 Glutaredoxin-related protein Glutaredoxins
fig|6666666.229917.peg.48 CDS AJMH02000001.1 37756 38046 1 + 291 ISSo9, nucleotidyltransferase domain protein - none -
fig|6666666.229917.peg.49 CDS AJMH02000001.1 38137 38841 1 + 705 hypothetical protein - none -
fig|6666666.229917.peg.50 CDS AJMH02000001.1 38923 41004 1 + 2082 Glycyl-tRNA synthetase beta chain (EC 6.1.1.14) Glycyl-tRNA synthetase;
Glycyl-tRNA synthetase containing cluster;
tRNA aminoacylation, Gly
fig|6666666.229917.peg.51 CDS AJMH02000001.1 41494 41216 -1 - 279 Porphobilinogen synthase (EC 4.2.1.24) Heme and Siroheme Biosynthesis
fig|6666666.229917.peg.52 CDS AJMH02000001.1 42237 41497 -3 - 741 Porphobilinogen synthase (EC 4.2.1.24) Heme and Siroheme Biosynthesis
fig|6666666.229917.peg.53 CDS AJMH02000001.1 43020 42256 -3 - 765 Twin-arginine translocation protein TatC Cluster-based Subsystem Grouping Hypotheticals - perhaps Proteosome Related;
Twin-arginine translocation system
fig|6666666.229917.peg.54 CDS AJMH02000001.1 43720 43058 -1 - 663 Twin-arginine translocation protein TatB Twin-arginine translocation system
fig|6666666.229917.peg.55 CDS AJMH02000001.1 43948 43724 -1 - 225 Twin-arginine translocation protein TatA Cluster-based Subsystem Grouping Hypotheticals - perhaps Proteosome Related;
Twin-arginine translocation system
fig|6666666.229917.peg.56 CDS AJMH02000001.1 45223 44351 -1 - 873 33 kDa chaperonin (Heat shock protein 33) (HSP33) CBSS-584.1.peg.3382
fig|6666666.229917.peg.57 CDS AJMH02000001.1 45707 45291 -2 - 417 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) CBSS-584.1.peg.3382;
Cell division-ribosomal stress proteins cluster;
DNA replication cluster 1;
Heat shock dnaK gene cluster extended
fig|6666666.229917.peg.58 CDS AJMH02000001.1 46379 45720 -2 - 660 FIG001957: putative hydrolase CBSS-584.1.peg.3382
fig|6666666.229917.peg.59 CDS AJMH02000001.1 46460 47008 2 + 549 ADP compounds hydrolase NudE (EC 3.6.1.-) Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229917.peg.60 CDS AJMH02000001.1 47894 47013 -2 - 882 Transcriptional regulator, AraC family - none -
fig|6666666.229917.peg.61 CDS AJMH02000001.1 48590 47964 -2 - 627 membrane protein ykgB - none -
fig|6666666.229917.peg.62 CDS AJMH02000001.1 48959 50965 2 + 2007 oligopeptide transporter - none -
fig|6666666.229917.peg.63 CDS AJMH02000001.1 51027 51455 3 + 429 hypothetical protein - none -
fig|6666666.229917.peg.64 CDS AJMH02000001.1 51493 52302 1 + 810 3@1(2@1),5@1-bisphosphate nucleotidase (EC 3.1.3.7) - none -
fig|6666666.229917.peg.65 CDS AJMH02000001.1 52384 53868 1 + 1485 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) Entner-Doudoroff Pathway;
Pentose phosphate pathway
fig|6666666.229917.peg.66 CDS AJMH02000001.1 54121 54819 1 + 699 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type Entner-Doudoroff Pathway;
Pentose phosphate pathway
fig|6666666.229917.peg.67 CDS AJMH02000001.1 55146 55574 3 + 429 FIG00848466: hypothetical protein - none -
fig|6666666.229917.peg.68 CDS AJMH02000001.1 55689 56381 3 + 693 Aspartate racemase (EC 5.1.1.13) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229917.peg.69 CDS AJMH02000001.1 56394 56648 3 + 255 Glutaredoxin-related protein Glutaredoxins
fig|6666666.229917.peg.70 CDS AJMH02000001.1 56728 57186 1 + 459 Uncharacterized virulence-associated protein D - none -
fig|6666666.229917.peg.71 CDS AJMH02000001.1 57721 57575 -1 - 147 hypothetical protein - none -
fig|6666666.229917.peg.72 CDS AJMH02000001.1 57742 59196 1 + 1455 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) D-gluconate and ketogluconates metabolism;
Pentose phosphate pathway
fig|6666666.229917.peg.73 CDS AJMH02000001.1 60851 59607 -2 - 1245 FIG138576: 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229917.peg.74 CDS AJMH02000001.1 61599 60871 -3 - 729 3-oxoacyl-[ACP] reductase (EC 1.1.1.100) Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229917.peg.75 CDS AJMH02000001.1 62092 61649 -1 - 444 3-hydroxydecanoyl-[ACP] dehydratase (EC 4.2.1.60) Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229917.peg.76 CDS AJMH02000001.1 63308 62085 -2 - 1224 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) FabV like Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229917.peg.77 CDS AJMH02000001.1 63796 63317 -1 - 480 FIG085779: Lipoprotein Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229917.peg.78 CDS AJMH02000001.1 65581 63926 -1 - 1656 FIG021862: membrane protein, exporter Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229917.peg.79 CDS AJMH02000002.1 814 89 -1 - 726 Integral membrane protein TerC - none -
fig|6666666.229917.peg.80 CDS AJMH02000002.1 1547 879 -2 - 669 DNA mismatch repair endonuclease MutH DNA repair, bacterial
fig|6666666.229917.peg.81 CDS AJMH02000002.1 2083 1544 -1 - 540 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) DNA repair, bacterial
fig|6666666.229917.peg.82 CDS AJMH02000002.1 3590 2160 -2 - 1431 Long-chain fatty acid transport protein - none -
fig|6666666.229917.peg.83 CDS AJMH02000002.1 3793 4083 1 + 291 FIG00696346: hypothetical protein - none -
fig|6666666.229917.peg.84 CDS AJMH02000002.1 4585 5190 1 + 606 Glycosyl transferase, group 2 family protein - none -
fig|6666666.229917.peg.85 CDS AJMH02000002.1 6942 5995 -3 - 948 Putative secretion ATPase - none -
fig|6666666.229917.peg.86 CDS AJMH02000002.1 8964 7693 -3 - 1272 UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7) CBSS-12149.1.peg.3301;
Peptidoglycan Biosynthesis;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229917.peg.87 CDS AJMH02000002.1 9238 8981 -1 - 258 YrbA protein Broadly distributed proteins not in subsystems;
CBSS-12149.1.peg.3301
fig|6666666.229917.peg.88 CDS AJMH02000002.1 9507 9238 -3 - 270 Uncharacterized protein YrbB CBSS-12149.1.peg.3301
fig|6666666.229917.peg.89 CDS AJMH02000002.1 10242 9601 -3 - 642 Uncharacterized ABC transporter, auxiliary component YrbC CBSS-12149.1.peg.3301;
Lipopolysaccharide assembly
fig|6666666.229917.peg.90 CDS AJMH02000002.1 10780 10271 -1 - 510 Uncharacterized ABC transporter, periplasmic component YrbD CBSS-12149.1.peg.3301;
Lipopolysaccharide assembly
fig|6666666.229917.peg.91 CDS AJMH02000002.1 11588 10803 -2 - 786 Uncharacterized ABC transporter, permease component YrbE CBSS-12149.1.peg.3301;
Lipopolysaccharide assembly
fig|6666666.229917.peg.92 CDS AJMH02000002.1 12379 11582 -1 - 798 Uncharacterized ABC transporter, ATP-binding protein YrbF CBSS-12149.1.peg.3301;
Lipopolysaccharide assembly
fig|6666666.229917.peg.93 CDS AJMH02000002.1 12663 13238 3 + 576 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters Lipopolysaccharide assembly
fig|6666666.229917.peg.94 CDS AJMH02000002.1 13219 13737 1 + 519 LptA, protein essential for LPS transport across the periplasm KDO2-Lipid A biosynthesis;
Lipopolysaccharide assembly
fig|6666666.229917.peg.95 CDS AJMH02000002.1 13743 14468 3 + 726 Lipopolysaccharide ABC transporter, ATP-binding protein LptB KDO2-Lipid A biosynthesis;
Lipopolysaccharide assembly
fig|6666666.229917.peg.96 CDS AJMH02000002.1 14472 14993 3 + 522 PTS IIA-like nitrogen-regulatory protein PtsN - none -
fig|6666666.229917.peg.97 CDS AJMH02000002.1 15021 15875 3 + 855 FIG000506: Predicted P-loop-containing kinase - none -
fig|6666666.229917.peg.98 CDS AJMH02000002.1 17215 15890 -1 - 1326 Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) DNA repair, bacterial;
Purine salvage cluster
fig|6666666.229917.peg.99 CDS AJMH02000002.1 18415 17222 -1 - 1194 FIG074102: hypothetical protein - none -
fig|6666666.229917.peg.100 CDS AJMH02000002.1 18741 18448 -3 - 294 UPF0125 protein yfjF - none -
fig|6666666.229917.peg.101 CDS AJMH02000002.1 19113 18775 -3 - 339 Putative oligoketide cyclase/lipid transport protein, similarity with yeast ubiquinone-binding protein YOL008W - none -
fig|6666666.229917.peg.102 CDS AJMH02000002.1 19234 19650 1 + 417 conserved hypothetical protein; possible membrane protein - none -
fig|6666666.229917.peg.103 CDS AJMH02000002.1 20748 19744 -3 - 1005 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis;
Pyridoxin (Vitamin B6) Biosynthesis
fig|6666666.229917.peg.104 CDS AJMH02000002.1 20918 21628 2 + 711 Guanylate kinase (EC 2.7.4.8) CBSS-323097.3.peg.2594;
Purine conversions
fig|6666666.229917.peg.105 CDS AJMH02000002.1 21686 21952 2 + 267 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) CBSS-176299.4.peg.1292;
RNA polymerase bacterial
fig|6666666.229917.peg.106 CDS AJMH02000002.1 21998 24121 2 + 2124 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II / Guanosine-3@1,5@1-bis(diphosphate) 3@1-pyrophosphohydrolase (EC 3.1.7.2) CBSS-176299.4.peg.1292;
CBSS-176299.4.peg.1292;
Stringent Response, (p)ppGpp metabolism;
Stringent Response, (p)ppGpp metabolism
fig|6666666.229917.peg.107 CDS AJMH02000002.1 24122 26203 2 + 2082 ATP-dependent DNA helicase RecG (EC 3.6.1.-) - none -
fig|6666666.229917.peg.108 CDS AJMH02000002.1 26196 26693 3 + 498 Chorismate--pyruvate lyase (EC 4.1.3.40) Ubiquinone Biosynthesis
fig|6666666.229917.peg.109 CDS AJMH02000002.1 26724 27551 3 + 828 Glutamate racemase (EC 5.1.1.3) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Peptidoglycan Biosynthesis
fig|6666666.229917.peg.110 CDS AJMH02000004.1 367 750 1 + 384 Pyruvate formate-lyase (EC 2.3.1.54) Butanol Biosynthesis;
Fermentations: Mixed acid
fig|6666666.229917.peg.111 CDS AJMH02000004.1 914 2710 2 + 1797 Translation elongation factor LepA Heat shock dnaK gene cluster extended
fig|6666666.229917.peg.112 CDS AJMH02000004.1 2721 3743 3 + 1023 Signal peptidase I (EC 3.4.21.89) CBSS-176299.4.peg.1292;
Signal peptidase
fig|6666666.229917.peg.113 CDS AJMH02000004.1 3750 4430 3 + 681 Ribonuclease III (EC 3.1.26.3) CBSS-176299.4.peg.1292;
RNA processing and degradation, bacterial
fig|6666666.229917.peg.114 CDS AJMH02000004.1 4427 5335 2 + 909 GTP-binding protein Era Bacterial Cell Division;
CBSS-176299.4.peg.1292;
Glycyl-tRNA synthetase containing cluster;
tRNA modification Archaea
fig|6666666.229917.peg.115 CDS AJMH02000004.1 6794 5439 -2 - 1356 GTPase and tRNA-U34 5-formylation enzyme TrmE Cell Division Subsystem including YidCD;
RNA modification and chromosome partitioning cluster;
RNA modification cluster;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229917.peg.116 CDS AJMH02000004.1 8511 6922 -3 - 1590 Inner membrane protein translocase component YidC, long form CTP synthase (EC 6.3.4.2) cluster;
Cell Division Subsystem including YidCD;
RNA modification cluster
fig|6666666.229917.peg.117 CDS AJMH02000004.1 8816 8553 -2 - 264 Protein YidD Cell Division Subsystem including YidCD;
RNA modification cluster
fig|6666666.229917.peg.118 CDS AJMH02000004.1 9106 8771 -1 - 336 Ribonuclease P protein component (EC 3.1.26.5) Cell Division Subsystem including YidCD;
RNA modification cluster;
tRNA processing
fig|6666666.229917.peg.119 CDS AJMH02000004.1 9286 9152 -1 - 135 LSU ribosomal protein L34p Cell Division Subsystem including YidCD;
RNA modification cluster;
Ribosome LSU bacterial
fig|6666666.229917.peg.120 CDS AJMH02000004.1 9704 11065 2 + 1362 Chromosomal replication initiator protein DnaA Cell Division Subsystem including YidCD;
DNA replication cluster 1
fig|6666666.229917.peg.121 CDS AJMH02000004.1 11073 12176 3 + 1104 DNA polymerase III beta subunit (EC 2.7.7.7) Cell Division Subsystem including YidCD;
DNA replication cluster 1
fig|6666666.229917.peg.122 CDS AJMH02000004.1 12180 13256 3 + 1077 DNA recombination and repair protein RecF Cell Division Subsystem including YidCD;
DNA repair, bacterial RecFOR pathway;
DNA replication cluster 1
fig|6666666.229917.peg.123 CDS AJMH02000004.1 14058 13303 -3 - 756 Ubiquinone/menaquinone biosynthesis methyltransferase UbiE (EC 2.1.1.-) Menaquinone and Phylloquinone Biosynthesis;
Ubiquinone Biosynthesis
fig|6666666.229917.peg.124 CDS AJMH02000004.1 14246 14821 2 + 576 Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1) Oxidative stress;
Protection from Reactive Oxygen Species
fig|6666666.229917.peg.125 CDS AJMH02000005.1 1987 1562 -1 - 426 Universal stress protein A Universal stress protein family
fig|6666666.229917.peg.126 CDS AJMH02000005.1 2106 2963 3 + 858 Nucleoside triphosphate pyrophosphohydrolase MazG (EC 3.6.1.8) Nucleoside triphosphate pyrophosphohydrolase MazG
fig|6666666.229917.peg.127 CDS AJMH02000005.1 4050 3061 -3 - 990 Cytosine deaminase (EC 3.5.4.1) CBSS-326442.4.peg.1852;
Creatine and Creatinine Degradation;
pyrimidine conversions
fig|6666666.229917.peg.128 CDS AJMH02000005.1 6048 4309 -3 - 1740 FIG001881: hydrolase of alkaline phosphatase superfamily CBSS-211586.1.peg.1979
fig|6666666.229917.peg.129 CDS AJMH02000005.1 6277 6053 -1 - 225 FIG002927: hypothetical protein CBSS-211586.1.peg.1979
fig|6666666.229917.peg.130 CDS AJMH02000005.1 6404 7429 2 + 1026 Nucleoid-associated protein NdpA CBSS-211586.1.peg.1979
fig|6666666.229917.peg.131 CDS AJMH02000005.1 7495 7908 1 + 414 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex Lipopolysaccharide assembly
fig|6666666.229917.peg.132 CDS AJMH02000005.1 7950 8645 3 + 696 Copper-sensing two-component system response regulator CpxR Orphan regulatory proteins
fig|6666666.229917.peg.133 CDS AJMH02000005.1 8690 10078 2 + 1389 Copper sensory histidine kinase CpxA Orphan regulatory proteins
fig|6666666.229917.peg.134 CDS AJMH02000005.1 11342 10134 -2 - 1209 Sodium/glutamate symport protein - none -
fig|6666666.229917.peg.135 CDS AJMH02000005.1 11942 11508 -2 - 435 D-tyrosyl-tRNA(Tyr) deacylase (EC 3.6.1.n1) - none -
fig|6666666.229917.peg.136 CDS AJMH02000005.1 12769 11939 -1 - 831 Ribonuclease BN (EC 3.1.-.-) - none -
fig|6666666.229917.peg.137 CDS AJMH02000005.1 13239 12766 -3 - 474 UPF0225 protein YchJ Broadly distributed proteins not in subsystems
fig|6666666.229917.peg.138 CDS AJMH02000005.1 13910 13242 -2 - 669 Uncharacterized protein conserved in bacteria - none -
fig|6666666.229917.peg.139 CDS AJMH02000005.1 14036 15535 2 + 1500 ATPase component BioM of energizing module of biotin ECF transporter Biotin biosynthesis;
Biotin synthesis cluster;
ECF class transporters
fig|6666666.229917.peg.140 CDS AJMH02000005.1 15924 16688 3 + 765 putative tetracenomycin polyketide synthesis O-methyltransferase - none -
fig|6666666.229917.peg.141 CDS AJMH02000005.1 17659 16766 -1 - 894 Transcriptional regulator, LysR family - none -
fig|6666666.229917.peg.142 CDS AJMH02000005.1 18018 18863 3 + 846 oxidoreductase of aldo/keto reductase family, subgroup 1 - none -
fig|6666666.229917.peg.143 CDS AJMH02000005.1 18927 19907 3 + 981 Aldo-keto reductase - none -
fig|6666666.229917.peg.144 CDS AJMH02000005.1 20133 21188 3 + 1056 Carboxylesterase type B - none -
fig|6666666.229917.peg.145 CDS AJMH02000005.1 21456 21788 3 + 333 Carboxylesterase type B - none -
fig|6666666.229917.peg.146 CDS AJMH02000005.1 21924 23033 3 + 1110 Putative exported protein precursor - none -
fig|6666666.229917.peg.147 CDS AJMH02000005.1 24062 23172 -2 - 891 Transcriptional regulator, LysR family - none -
fig|6666666.229917.peg.148 CDS AJMH02000005.1 24162 25226 3 + 1065 FIG01220323: hypothetical protein - none -
fig|6666666.229917.peg.149 CDS AJMH02000005.1 27214 25379 -1 - 1836 Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) Sialic Acid Metabolism;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229917.peg.150 CDS AJMH02000005.1 28045 27269 -1 - 777 Transcriptional regulator of glmS gene, DeoR family - none -
fig|6666666.229917.peg.151 CDS AJMH02000005.1 28464 28192 -3 - 273 DNA-binding protein HU-alpha DNA structural proteins, bacterial;
DNA uptake cluster
fig|6666666.229917.peg.152 CDS AJMH02000005.1 29221 28631 -1 - 591 FIG01200173: hypothetical protein - none -
fig|6666666.229917.peg.153 CDS AJMH02000005.1 30303 29239 -3 - 1065 Uroporphyrinogen III decarboxylase (EC 4.1.1.37) Heme and Siroheme Biosynthesis
fig|6666666.229917.peg.154 CDS AJMH02000005.1 31190 30300 -2 - 891 NADH pyrophosphatase (EC 3.6.1.22) DNA uptake cluster;
Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229917.peg.155 CDS AJMH02000005.1 31883 31239 -2 - 645 converved hypothetical protein - none -
fig|6666666.229917.peg.156 CDS AJMH02000005.1 32141 33757 2 + 1617 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) CBSS-584.1.peg.3382;
Pyruvate metabolism I: anaplerotic reactions, PEP;
Serine-glyoxylate cycle
fig|6666666.229917.peg.157 CDS AJMH02000005.1 35369 33822 -2 - 1548 Exopolyphosphatase (EC 3.6.1.11) Phosphate metabolism;
Polyphosphate
fig|6666666.229917.peg.158 CDS AJMH02000005.1 39250 35372 -1 - 3879 Uncharacterized protein YtfN Cluster Ytf and putative sugar transporter;
Putative sugar ABC transporter (ytf cluster)
fig|6666666.229917.peg.159 CDS AJMH02000005.1 41137 39278 -1 - 1860 Uncharacterized protein YtfM precursor Cluster Ytf and putative sugar transporter;
Putative sugar ABC transporter (ytf cluster)
fig|6666666.229917.peg.160 CDS AJMH02000005.1 41833 41204 -1 - 630 Nitrate/nitrite response regulator protein - none -
fig|6666666.229917.peg.161 CDS AJMH02000005.1 44344 41843 -1 - 2502 Adenylate cyclase (EC 4.6.1.1) cAMP signaling in bacteria
fig|6666666.229917.peg.162 CDS AJMH02000005.1 44500 45426 1 + 927 Porphobilinogen deaminase (EC 2.5.1.61) Heme and Siroheme Biosynthesis
fig|6666666.229917.peg.163 CDS AJMH02000005.1 45439 46185 1 + 747 Uroporphyrinogen-III synthase (EC 4.2.1.75) Heme and Siroheme Biosynthesis
fig|6666666.229917.peg.164 CDS AJMH02000005.1 46216 47601 1 + 1386 Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) Heme and Siroheme Biosynthesis
fig|6666666.229917.peg.165 CDS AJMH02000005.1 47614 48891 1 + 1278 Uncharacterized protein EC-HemY, likely associated with heme metabolism based on gene clustering with hemC, hemD in Proteobacteria (unrelated to HemY-type PPO in GramPositives) - none -
fig|6666666.229917.peg.166 CDS AJMH02000005.1 49669 48932 -1 - 738 Putative preQ0 transporter Queuosine-Archaeosine Biosynthesis
fig|6666666.229917.peg.167 CDS AJMH02000005.1 49931 50212 2 + 282 hypothetical protein - none -
fig|6666666.229917.peg.168 CDS AJMH02000005.1 50398 50985 1 + 588 DNA-directed RNA polymerase specialized sigma subunit, sigma24-like - none -
fig|6666666.229917.peg.169 CDS AJMH02000005.1 51000 51191 3 + 192 hypothetical protein - none -
fig|6666666.229917.peg.170 CDS AJMH02000005.1 51756 51274 -3 - 483 Transcription elongation factor GreB CBSS-243265.1.peg.198;
Transcription factors bacterial
fig|6666666.229917.peg.171 CDS AJMH02000005.1 51967 52101 1 + 135 Transcription accessory protein (S1 RNA-binding domain) CBSS-243265.1.peg.198;
Cell division-ribosomal stress proteins cluster;
Transcription factors bacterial
fig|6666666.229917.peg.172 CDS AJMH02000005.1 53090 52491 -2 - 600 Phosphoglycerate mutase (EC 5.4.2.1) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis;
Phosphoglycerate mutase protein family
fig|6666666.229917.peg.173 CDS AJMH02000005.1 54571 53102 -1 - 1470 Sodium-dependent transporter - none -
fig|6666666.229917.peg.174 CDS AJMH02000005.1 54681 55568 3 + 888 RuBisCO operon transcriptional regulator CO2 uptake, carboxysome
fig|6666666.229917.peg.175 CDS AJMH02000005.1 55785 58100 3 + 2316 Transcription accessory protein (S1 RNA-binding domain) CBSS-243265.1.peg.198;
Cell division-ribosomal stress proteins cluster;
Transcription factors bacterial
fig|6666666.229917.peg.176 CDS AJMH02000005.1 59605 58148 -1 - 1458 L-xylulose/3-keto-L-gulonate kinase (EC 2.7.1.-) L-ascorbate utilization (and related gene clusters)
fig|6666666.229917.peg.177 CDS AJMH02000005.1 60639 59611 -3 - 1029 Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229917.peg.178 CDS AJMH02000005.1 62142 60655 -3 - 1488 Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229917.peg.179 CDS AJMH02000005.1 62305 63246 1 + 942 Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229917.peg.180 CDS AJMH02000006.1 1577 504 -2 - 1074 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) - none -
fig|6666666.229917.peg.181 CDS AJMH02000006.1 1706 2989 2 + 1284 Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8) CBSS-196164.1.peg.461;
Heme and Siroheme Biosynthesis
fig|6666666.229917.peg.182 CDS AJMH02000006.1 5656 3065 -1 - 2592 [Protein-PII] uridylyltransferase (EC 2.7.7.59) Ammonia assimilation;
CBSS-312309.3.peg.1965
fig|6666666.229917.peg.183 CDS AJMH02000006.1 6522 5722 -3 - 801 Methionine aminopeptidase (EC 3.4.11.18) CBSS-312309.3.peg.1965;
Translation termination factors bacterial
fig|6666666.229917.peg.184 CDS AJMH02000006.1 6656 6997 2 + 342 probable iron binding protein from the HesB_IscA_SufA family - none -
fig|6666666.229917.peg.185 CDS AJMH02000006.1 6999 7214 3 + 216 hypothetical protein - none -
fig|6666666.229917.peg.186 CDS AJMH02000006.1 7260 9653 3 + 2394 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) DNA uptake cluster;
Peptidoglycan Biosynthesis;
Type IV pilus
fig|6666666.229917.peg.187 CDS AJMH02000006.1 9952 11859 1 + 1908 High-affinity Fe2+/Pb2+ permease precursor Iron transport system including ABC transporter
fig|6666666.229917.peg.188 CDS AJMH02000006.1 11902 12423 1 + 522 Periplasmic protein p19 involved in high-affinity Fe2+ transport Iron transport system including ABC transporter
fig|6666666.229917.peg.189 CDS AJMH02000006.1 12562 13992 1 + 1431 Fe2+ ABC transporter, substrate binding protein Iron transport system including ABC transporter
fig|6666666.229917.peg.190 CDS AJMH02000006.1 13995 15320 3 + 1326 Cell division protein FtsX Bacterial Cell Division
fig|6666666.229917.peg.191 CDS AJMH02000006.1 15331 16446 1 + 1116 Cell division protein FtsX Bacterial Cell Division
fig|6666666.229917.peg.192 CDS AJMH02000006.1 16448 17119 2 + 672 Fe2+ ABC transporter, ATP-binding subunit Iron transport system including ABC transporter
fig|6666666.229917.peg.193 CDS AJMH02000006.1 17109 17600 3 + 492 Possible periplasmic thiredoxin Iron transport system including ABC transporter
fig|6666666.229917.peg.194 CDS AJMH02000006.1 17607 17918 3 + 312 Cytochrome C553 (soluble cytochrome f) Iron transport system including ABC transporter;
Soluble cytochromes and functionally related electron carriers
fig|6666666.229917.peg.195 CDS AJMH02000006.1 18007 18129 1 + 123 hypothetical protein - none -
fig|6666666.229917.peg.196 CDS AJMH02000006.1 18246 18911 3 + 666 Phosphoglycolate phosphatase (EC 3.1.3.18) 2-phosphoglycolate salvage;
Glycolate, glyoxylate interconversions
fig|6666666.229917.peg.197 CDS AJMH02000006.1 19075 18917 -1 - 159 hypothetical protein - none -
fig|6666666.229917.peg.198 CDS AJMH02000006.1 20251 19103 -1 - 1149 Mobile element protein - none -
fig|6666666.229917.peg.199 CDS AJMH02000006.1 21659 20658 -2 - 1002 Related to membrane proteins - none -
fig|6666666.229917.peg.200 CDS AJMH02000006.1 25758 21709 -3 - 4050 HrpA-like helicases - none -
fig|6666666.229917.peg.201 CDS AJMH02000006.1 26144 25755 -2 - 390 COG2363 - none -
fig|6666666.229917.peg.202 CDS AJMH02000006.1 26597 26145 -2 - 453 putative membrane protein - none -
fig|6666666.229917.peg.203 CDS AJMH02000006.1 26599 26712 1 + 114 hypothetical protein - none -
fig|6666666.229917.peg.204 CDS AJMH02000006.1 27051 26722 -3 - 330 Glutaredoxin-related protein Glutaredoxins
fig|6666666.229917.peg.205 CDS AJMH02000006.1 28433 27393 -2 - 1041 Outer membrane protein A precursor Osmoregulation
fig|6666666.229917.peg.206 CDS AJMH02000006.1 28918 31971 1 + 3054 Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD Glycolate, glyoxylate interconversions
fig|6666666.229917.peg.207 CDS AJMH02000006.1 31981 32403 1 + 423 FIG017415: ydiI hotdog fold superfamily - none -
fig|6666666.229917.peg.208 CDS AJMH02000006.1 32396 33460 2 + 1065 Ferrochelatase, protoheme ferro-lyase (EC 4.99.1.1) Heme and Siroheme Biosynthesis
fig|6666666.229917.peg.209 CDS AJMH02000006.1 33501 34001 3 + 501 Thiol peroxidase, Tpx-type (EC 1.11.1.15) Thioredoxin-disulfide reductase
fig|6666666.229917.peg.210 CDS AJMH02000006.1 35351 34206 -2 - 1146 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism
fig|6666666.229917.peg.211 CDS AJMH02000006.1 36210 35407 -3 - 804 Glucosamine-6-phosphate deaminase (EC 3.5.99.6) Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism
fig|6666666.229917.peg.212 CDS AJMH02000006.1 37243 36365 -1 - 879 N-acetylneuraminate lyase (EC 4.1.3.3) Sialic Acid Metabolism
fig|6666666.229917.peg.213 CDS AJMH02000006.1 38122 37253 -1 - 870 Sialic acid utilization regulator, RpiR family Sialic Acid Metabolism
fig|6666666.229917.peg.214 CDS AJMH02000006.1 39019 38132 -1 - 888 N-acetylmannosamine kinase (EC 2.7.1.60) Sialic Acid Metabolism
fig|6666666.229917.peg.215 CDS AJMH02000006.1 39734 39033 -2 - 702 N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9) Sialic Acid Metabolism
fig|6666666.229917.peg.216 CDS AJMH02000006.1 39976 40962 1 + 987 TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein Sialic Acid Metabolism
fig|6666666.229917.peg.217 CDS AJMH02000006.1 41026 42876 1 + 1851 TRAP-type transport system, large permease component, predicted N-acetylneuraminate transporter / TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229917.peg.218 CDS AJMH02000006.1 43015 44145 1 + 1131 Sialic acid-induced transmembrane protein YjhT(NanM), possible mutarotase Sialic Acid Metabolism
fig|6666666.229917.peg.219 CDS AJMH02000006.1 44394 45860 3 + 1467 PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69) Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism;
Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229917.peg.220 CDS AJMH02000006.1 47606 46536 -2 - 1071 Outer membrane protein A precursor Osmoregulation
fig|6666666.229917.peg.221 CDS AJMH02000006.1 49875 47833 -3 - 2043 Excinuclease ABC subunit B DNA repair, UvrABC system
fig|6666666.229917.peg.222 CDS AJMH02000006.1 51518 50487 -2 - 1032 putative membrane protein - none -
fig|6666666.229917.peg.223 CDS AJMH02000006.1 52198 51533 -1 - 666 putative exported protein - none -
fig|6666666.229917.peg.224 CDS AJMH02000006.1 52601 54247 2 + 1647 ABC transporter ATP-binding protein - none -
fig|6666666.229917.peg.225 CDS AJMH02000006.1 54848 54351 -2 - 498 putative adhesin/invasin - none -
fig|6666666.229917.peg.226 CDS AJMH02000007.1 1490 63 -2 - 1428 Exodeoxyribonuclease I (EC 3.1.11.1) DNA Repair Base Excision
fig|6666666.229917.peg.227 CDS AJMH02000007.1 2373 1519 -3 - 855 Integral membrane protein - none -
fig|6666666.229917.peg.228 CDS AJMH02000007.1 6939 2449 -3 - 4491 Chromosome partition protein MukB DNA structural proteins, bacterial;
MukBEF Chromosome Condensation
fig|6666666.229917.peg.229 CDS AJMH02000007.1 7679 6939 -2 - 741 Chromosome partition protein MukE DNA structural proteins, bacterial;
MukBEF Chromosome Condensation
fig|6666666.229917.peg.230 CDS AJMH02000007.1 11161 7700 -1 - 3462 Putative 2-acylglycerophosphoethanolamine acyltransferase / acyl-acyl carrier protein synthetase (EC 6.2.1.20) - none -
fig|6666666.229917.peg.231 CDS AJMH02000007.1 11313 11176 -3 - 138 hypothetical protein - none -
fig|6666666.229917.peg.232 CDS AJMH02000007.1 12669 11341 -3 - 1329 Chromosome partition protein MukF DNA structural proteins, bacterial;
MukBEF Chromosome Condensation
fig|6666666.229917.peg.233 CDS AJMH02000007.1 13728 12847 -3 - 882 Murein-DD-endopeptidase (EC 3.4.99.-) Peptidoglycan Biosynthesis
fig|6666666.229917.peg.234 CDS AJMH02000007.1 14484 13876 -3 - 609 lipoprotein HlpB - none -
fig|6666666.229917.peg.235 CDS AJMH02000007.1 14919 14632 -3 - 288 LSU ribosomal protein L25p Ribosome LSU bacterial;
Transcription repair cluster
fig|6666666.229917.peg.236 CDS AJMH02000007.1 15133 15738 1 + 606 DedA protein DedA family of inner membrane proteins;
Uptake of selenate and selenite
fig|6666666.229917.peg.237 CDS AJMH02000007.1 15692 15832 2 + 141 hypothetical protein - none -
fig|6666666.229917.peg.238 CDS AJMH02000007.1 18322 15857 -1 - 2466 Glycogen phosphorylase (EC 2.4.1.1) Glycogen metabolism;
Glycogen metabolism cluster;
Maltose and Maltodextrin Utilization
fig|6666666.229917.peg.239 CDS AJMH02000007.1 19885 18446 -1 - 1440 Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21) Glycogen metabolism;
Glycogen metabolism cluster
fig|6666666.229917.peg.240 CDS AJMH02000007.1 21397 20087 -1 - 1311 Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27) Glycogen metabolism;
Glycogen metabolism cluster
fig|6666666.229917.peg.241 CDS AJMH02000007.1 23433 21424 -3 - 2010 Glycogen debranching enzyme (EC 3.2.1.-) Glycogen metabolism;
Glycogen metabolism cluster
fig|6666666.229917.peg.242 CDS AJMH02000007.1 25625 23430 -2 - 2196 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) Glycogen metabolism;
Glycogen metabolism cluster
fig|6666666.229917.peg.243 CDS AJMH02000007.1 25825 25622 -1 - 204 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) Glycogen metabolism;
Glycogen metabolism cluster;
Maltose and Maltodextrin Utilization;
Maltose utilization cluster
fig|6666666.229917.peg.244 CDS AJMH02000007.1 26716 26282 -1 - 435 YcgN (Fragment) CBSS-243277.1.peg.4359
fig|6666666.229917.peg.245 CDS AJMH02000007.1 28479 26788 -3 - 1692 Glutaminyl-tRNA synthetase (EC 6.1.1.18) tRNA aminoacylation, Glu and Gln
fig|6666666.229917.peg.246 CDS AJMH02000007.1 28680 29864 3 + 1185 Macrolide-specific efflux protein MacA Multidrug Resistance Efflux Pumps
fig|6666666.229917.peg.247 CDS AJMH02000007.1 29884 31818 1 + 1935 Macrolide export ATP-binding/permease protein MacB (EC 3.6.3.-) Multidrug Resistance Efflux Pumps
fig|6666666.229917.peg.248 CDS AJMH02000007.1 31895 33268 2 + 1374 RND efflux system, outer membrane lipoprotein CmeC Multidrug Resistance Efflux Pumps
fig|6666666.229917.peg.249 CDS AJMH02000007.1 34659 33541 -3 - 1119 Esterase/lipase - none -
fig|6666666.229917.peg.250 CDS AJMH02000007.1 34919 34656 -2 - 264 Esterase/lipase - none -
fig|6666666.229917.peg.251 CDS AJMH02000007.1 35818 35549 -1 - 270 hypothetical protein - none -
fig|6666666.229917.peg.252 CDS AJMH02000007.1 36385 38082 1 + 1698 hypothetical protein - none -
fig|6666666.229917.peg.253 CDS AJMH02000007.1 38456 38133 -2 - 324 Alkylphosphonate utilization operon protein PhnA - none -
fig|6666666.229917.peg.254 CDS AJMH02000007.1 39402 38539 -3 - 864 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229917.peg.255 CDS AJMH02000007.1 40124 39447 -2 - 678 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses;
Ribosome biogenesis bacterial;
tRNA modification Bacteria
fig|6666666.229917.peg.256 CDS AJMH02000007.1 40255 40905 1 + 651 Putative surface protein - none -
fig|6666666.229917.peg.257 CDS AJMH02000007.1 40984 41163 1 + 180 Putative surface protein - none -
fig|6666666.229917.peg.258 CDS AJMH02000007.1 41177 42634 2 + 1458 Cardiolipin synthetase (EC 2.7.8.-) Cardiolipin synthesis;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229917.peg.259 CDS AJMH02000007.1 42696 43337 3 + 642 Hypothetical, related to broad specificity phosphatases COG0406 CBSS-196164.1.peg.461
fig|6666666.229917.peg.260 CDS AJMH02000007.1 44740 43394 -1 - 1347 Dihydrofolate synthase (EC 6.3.2.12) @ Folylpolyglutamate synthase (EC 6.3.2.17) Folate Biosynthesis;
Folate Biosynthesis
fig|6666666.229917.peg.261 CDS AJMH02000007.1 45659 44763 -2 - 897 Acetyl-coenzyme A carboxyl transferase beta chain (EC 6.4.1.2) Fatty Acid Biosynthesis FASII
fig|6666666.229917.peg.262 CDS AJMH02000007.1 45884 46129 2 + 246 Exodeoxyribonuclease VII small subunit (EC 3.1.11.6) DNA repair, bacterial;
Purine salvage cluster
fig|6666666.229917.peg.263 CDS AJMH02000007.1 46140 47030 3 + 891 Octaprenyl diphosphate synthase (EC 2.5.1.90) / Dimethylallyltransferase (EC 2.5.1.1) / (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10) / Geranylgeranyl diphosphate synthase (EC 2.5.1.29) Isoprenoid Biosynthesis;
Isoprenoid Biosynthesis;
Isoprenoid Biosynthesis: Interconversions;
Isoprenoinds for Quinones;
Isoprenoinds for Quinones;
Isoprenoinds for Quinones;
Isoprenoinds for Quinones;
Polyprenyl Diphosphate Biosynthesis;
Polyprenyl Diphosphate Biosynthesis;
Polyprenyl Diphosphate Biosynthesis
fig|6666666.229917.peg.264 CDS AJMH02000007.1 47115 48965 3 + 1851 1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis;
Pyridoxin (Vitamin B6) Biosynthesis;
Thiamin biosynthesis
fig|6666666.229917.peg.265 CDS AJMH02000007.1 49843 49085 -1 - 759 Galactitol utilization operon repressor D-Tagatose and Galactitol Utilization
fig|6666666.229917.peg.266 CDS AJMH02000007.1 50954 49911 -2 - 1044 Galactitol-1-phosphate 5-dehydrogenase (EC 1.1.1.251) D-Tagatose and Galactitol Utilization
fig|6666666.229917.peg.267 CDS AJMH02000007.1 52341 50977 -3 - 1365 PTS system, galactitol-specific IIC component (EC 2.7.1.69) D-Tagatose and Galactitol Utilization
fig|6666666.229917.peg.268 CDS AJMH02000007.1 52631 52347 -2 - 285 PTS system, galactitol-specific IIB component (EC 2.7.1.69) D-Tagatose and Galactitol Utilization
fig|6666666.229917.peg.269 CDS AJMH02000007.1 53099 52650 -2 - 450 PTS system, galactitol-specific IIA component (EC 2.7.1.69) D-Tagatose and Galactitol Utilization
fig|6666666.229917.peg.270 CDS AJMH02000007.1 54369 53077 -3 - 1293 Tagatose-6-phosphate kinase GatZ (EC 2.7.1.144) D-Tagatose and Galactitol Utilization
fig|6666666.229917.peg.271 CDS AJMH02000007.1 55337 54387 -2 - 951 Tagatose 1,6-bisphosphate aldolase (EC 4.1.2.40) - none -
fig|6666666.229917.peg.272 CDS AJMH02000007.1 55428 55547 3 + 120 hypothetical protein - none -
fig|6666666.229917.peg.273 CDS AJMH02000007.1 56719 56979 1 + 261 hypothetical protein - none -
fig|6666666.229917.peg.274 CDS AJMH02000007.1 57381 57028 -3 - 354 LSU ribosomal protein L20p Ribosome LSU bacterial
fig|6666666.229917.peg.275 CDS AJMH02000007.1 57712 57855 1 + 144 hypothetical protein - none -
fig|6666666.229917.peg.276 CDS AJMH02000007.1 58335 57856 -3 - 480 Translation initiation factor 3 Translation initiation factors bacterial
fig|6666666.229917.peg.277 CDS AJMH02000007.1 58710 59489 3 + 780 Ferredoxin--NADP(+) reductase (EC 1.18.1.2) Biogenesis of cytochrome c oxidases
fig|6666666.229917.peg.278 CDS AJMH02000007.1 59604 59467 -3 - 138 hypothetical protein - none -
fig|6666666.229917.peg.279 CDS AJMH02000007.1 60283 59606 -1 - 678 Type III restriction-modification system restriction subunit (EC 3.1.21.5) - none -
fig|6666666.229917.peg.280 CDS AJMH02000007.1 60842 60288 -2 - 555 Type III restriction-modification system restriction subunit (EC 3.1.21.5) - none -
fig|6666666.229917.peg.281 CDS AJMH02000007.1 61173 60820 -3 - 354 Type III restriction-modification system methylation subunit (EC 2.1.1.72) Restriction-Modification System
fig|6666666.229917.peg.282 CDS AJMH02000007.1 63360 61429 -3 - 1932 Threonyl-tRNA synthetase (EC 6.1.1.3) tRNA aminoacylation, Thr
fig|6666666.229917.peg.283 CDS AJMH02000007.1 63601 64476 1 + 876 Ribulosamine/erythrulosamine 3-kinase potentially involved in protein deglycation Protein deglycation
fig|6666666.229917.peg.284 CDS AJMH02000007.1 65359 64535 -1 - 825 Outer membrane protein A precursor Osmoregulation
fig|6666666.229917.peg.285 CDS AJMH02000007.1 66607 65549 -1 - 1059 Possible protease sohB (EC 3.4.21.-) - none -
fig|6666666.229917.peg.286 CDS AJMH02000007.1 66800 67390 2 + 591 FMN-dependent NADH-azoreductase - none -
fig|6666666.229917.peg.287 CDS AJMH02000007.1 68830 67493 -1 - 1338 NADH dehydrogenase (EC 1.6.99.3) Respiratory dehydrogenases 1;
Riboflavin synthesis cluster
fig|6666666.229917.peg.288 CDS AJMH02000007.1 70596 69007 -3 - 1590 Glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Respiratory dehydrogenases 1
fig|6666666.229917.peg.289 CDS AJMH02000007.1 71714 70866 -2 - 849 rRNA small subunit methyltransferase I 16S rRNA modification within P site of ribosome;
CBSS-160492.1.peg.550;
Heat shock dnaK gene cluster extended
fig|6666666.229917.peg.290 CDS AJMH02000007.1 71791 73509 1 + 1719 LppC putative lipoprotein CBSS-160492.1.peg.550
fig|6666666.229917.peg.291 CDS AJMH02000007.1 73510 73878 1 + 369 Predicted endonuclease distantly related to archaeal Holliday junction resolvase CBSS-160492.1.peg.550
fig|6666666.229917.peg.292 CDS AJMH02000007.1 73891 74475 1 + 585 Phosphoheptose isomerase (EC 5.3.1.-) CBSS-160492.1.peg.550;
Capsular heptose biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.229917.peg.293 CDS AJMH02000007.1 74540 75127 2 + 588 21 kDa hemolysin precursor CBSS-160492.1.peg.550
fig|6666666.229917.peg.294 CDS AJMH02000007.1 75925 75233 -1 - 693 Carbonic anhydrase (EC 4.2.1.1) - none -
fig|6666666.229917.peg.295 CDS AJMH02000007.1 76141 77211 1 + 1071 Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11) / Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) Cluster Ytf and putative sugar transporter;
Peptide methionine sulfoxide reductase;
Peptide methionine sulfoxide reductase;
Putative sugar ABC transporter (ytf cluster)
fig|6666666.229917.peg.296 CDS AJMH02000007.1 77215 77856 1 + 642 Cytochrome c-type biogenesis protein CcdA homolog, associated with MetSO reductase Peptide methionine sulfoxide reductase
fig|6666666.229917.peg.297 CDS AJMH02000007.1 77871 78353 3 + 483 Thiol:disulfide oxidoreductase associated with MetSO reductase Peptide methionine sulfoxide reductase
fig|6666666.229917.peg.298 CDS AJMH02000008.1 31 459 1 + 429 Inner membrane protein forms channel for type IV secretion of T-DNA complex, VirB8 - none -
fig|6666666.229917.peg.299 CDS AJMH02000008.1 461 595 2 + 135 hypothetical protein - none -
fig|6666666.229917.peg.300 CDS AJMH02000008.1 1448 1074 -2 - 375 Mobile element protein - none -
fig|6666666.229917.peg.301 CDS AJMH02000008.1 2219 1521 -2 - 699 NAD-dependent protein deacetylase of SIR2 family Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229917.peg.302 CDS AJMH02000008.1 2882 2235 -2 - 648 Glutaredoxin 2 Glutaredoxins;
Glutathione: Redox cycle
fig|6666666.229917.peg.303 CDS AJMH02000008.1 4474 2999 -1 - 1476 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) Bacterial Cell Division;
CBSS-354.1.peg.2917;
RNA processing and degradation, bacterial
fig|6666666.229917.peg.304 CDS AJMH02000008.1 4613 6133 2 + 1521 Proline/sodium symporter PutP (TC 2.A.21.2.1) @ Propionate/sodium symporter - none -
fig|6666666.229917.peg.305 CDS AJMH02000008.1 6147 7112 3 + 966 tRNA (5-methoxyuridine) 34 synthase tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229917.peg.306 CDS AJMH02000008.1 7200 8498 3 + 1299 Adenylosuccinate synthetase (EC 6.3.4.4) Purine conversions
fig|6666666.229917.peg.307 CDS AJMH02000008.1 8853 8563 -3 - 291 hypothetical protein - none -
fig|6666666.229917.peg.308 CDS AJMH02000008.1 9859 8876 -1 - 984 DnaJ-class molecular chaperone CbpA Protein chaperones
fig|6666666.229917.peg.309 CDS AJMH02000008.1 10147 11679 1 + 1533 GTP-binding protein EngA CBSS-290633.1.peg.1906;
CBSS-498211.3.peg.1415
fig|6666666.229917.peg.310 CDS AJMH02000008.1 12945 11749 -3 - 1197 Sugar efflux transporter SotB - none -
fig|6666666.229917.peg.311 CDS AJMH02000008.1 14149 12947 -1 - 1203 FIG00696476: hypothetical protein - none -
fig|6666666.229917.peg.312 CDS AJMH02000008.1 14734 14150 -1 - 585 Deoxycytidine triphosphate deaminase (EC 3.5.4.13) pyrimidine conversions
fig|6666666.229917.peg.313 CDS AJMH02000008.1 15394 14744 -1 - 651 Uridine kinase (EC 2.7.1.48) [C1] pyrimidine conversions
fig|6666666.229917.peg.314 CDS AJMH02000008.1 15703 16743 1 + 1041 Ferric iron ABC transporter, iron-binding protein Iron acquisition in Streptococcus
fig|6666666.229917.peg.315 CDS AJMH02000008.1 17196 17948 3 + 753 Ferric iron ABC transporter, iron-binding protein Iron acquisition in Streptococcus
fig|6666666.229917.peg.316 CDS AJMH02000008.1 17976 20033 3 + 2058 Ferric iron ABC transporter, permease protein Iron acquisition in Streptococcus
fig|6666666.229917.peg.317 CDS AJMH02000008.1 20049 21095 3 + 1047 Fe(3+) ions import ATP-binding protein fbpC (EC 3.6.3.30) - none -
fig|6666666.229917.peg.318 CDS AJMH02000008.1 21374 23485 2 + 2112 unknown - none -
fig|6666666.229917.peg.319 CDS AJMH02000008.1 24338 23538 -2 - 801 Inositol-1-monophosphatase (EC 3.1.3.25) - none -
fig|6666666.229917.peg.320 CDS AJMH02000008.1 24489 25229 3 + 741 tRNA:Cm32/Um32 methyltransferase RNA methylation;
tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229917.peg.321 CDS AJMH02000008.1 25291 25764 1 + 474 Iron-sulfur cluster regulator IscR Alanine biosynthesis;
Rrf2 family transcriptional regulators
fig|6666666.229917.peg.322 CDS AJMH02000008.1 25818 27032 3 + 1215 Cysteine desulfurase (EC 2.8.1.7), IscS subfamily Alanine biosynthesis;
Thiamin biosynthesis;
mnm5U34 biosynthesis bacteria;
tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229917.peg.323 CDS AJMH02000008.1 27092 27475 2 + 384 Iron-sulfur cluster assembly scaffold protein IscU Alanine biosynthesis;
tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229917.peg.324 CDS AJMH02000008.1 27607 27930 1 + 324 Iron binding protein IscA for iron-sulfur cluster assembly Alanine biosynthesis;
tRNA modification Bacteria
fig|6666666.229917.peg.325 CDS AJMH02000008.1 27942 28463 3 + 522 Chaperone protein HscB Protein chaperones;
tRNA modification Bacteria
fig|6666666.229917.peg.326 CDS AJMH02000008.1 28484 30343 2 + 1860 Chaperone protein HscA Alanine biosynthesis;
Protein chaperones;
tRNA modification Bacteria
fig|6666666.229917.peg.327 CDS AJMH02000008.1 30355 30696 1 + 342 Ferredoxin, 2Fe-2S Alanine biosynthesis;
Soluble cytochromes and functionally related electron carriers;
tRNA modification Bacteria
fig|6666666.229917.peg.328 CDS AJMH02000008.1 30696 30890 3 + 195 Believed to be involved in assembly of Fe-S clusters tRNA modification Bacteria
fig|6666666.229917.peg.329 CDS AJMH02000008.1 33084 31024 -3 - 2061 Methionyl-tRNA synthetase (EC 6.1.1.10) Scaffold proteins for [4Fe-4S] cluster assembly (MRP family);
tRNA aminoacylation, Met
fig|6666666.229917.peg.330 CDS AJMH02000008.1 33257 34369 2 + 1113 Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like Scaffold proteins for [4Fe-4S] cluster assembly (MRP family)
fig|6666666.229917.peg.331 CDS AJMH02000008.1 34466 34347 -2 - 120 hypothetical protein - none -
fig|6666666.229917.peg.332 CDS AJMH02000008.1 35604 34459 -3 - 1146 Beta-hexosaminidase (EC 3.2.1.52) Chitin and N-acetylglucosamine utilization
fig|6666666.229917.peg.333 CDS AJMH02000008.1 36165 35740 -3 - 426 Nucleoside diphosphate kinase (EC 2.7.4.6) CBSS-498211.3.peg.1415;
Purine conversions;
pyrimidine conversions
fig|6666666.229917.peg.334 CDS AJMH02000008.1 37484 36177 -2 - 1308 Peptidase B (EC 3.4.11.23) Aminopeptidases (EC 3.4.11.-)
fig|6666666.229917.peg.335 CDS AJMH02000008.1 37649 37527 -2 - 123 hypothetical protein - none -
fig|6666666.229917.peg.336 CDS AJMH02000008.1 37704 37922 3 + 219 Translation initiation factor 1 Translation initiation factors bacterial
fig|6666666.229917.peg.337 CDS AJMH02000008.1 39529 37985 -1 - 1545 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE Copper homeostasis: copper tolerance;
Lipoprotein Biosynthesis;
tRNA-methylthiotransferase containing cluster;
tRNA-methylthiotransferase containing cluster
fig|6666666.229917.peg.338 CDS AJMH02000008.1 40175 39921 -2 - 255 Magnesium and cobalt efflux protein CorC CBSS-56780.10.peg.1536;
Copper homeostasis: copper tolerance;
Glycyl-tRNA synthetase containing cluster;
Magnesium transport;
tRNA-methylthiotransferase containing cluster
fig|6666666.229917.peg.339 CDS AJMH02000008.1 80142 80270 3 + 129 hypothetical protein - none -
fig|6666666.229917.peg.340 CDS AJMH02000008.1 80308 81315 1 + 1008 [Citrate [pro-3S]-lyase] ligase (EC 6.2.1.22) Citrate Metabolism, Transport, and Regulation
fig|6666666.229917.peg.341 CDS AJMH02000008.1 81355 81642 1 + 288 Citrate lyase gamma chain, acyl carrier protein (EC 4.1.3.6) Citrate Metabolism, Transport, and Regulation;
TCA Cycle
fig|6666666.229917.peg.342 CDS AJMH02000008.1 81639 82514 3 + 876 Citrate lyase beta chain (EC 4.1.3.6) Citrate Metabolism, Transport, and Regulation
fig|6666666.229917.peg.343 CDS AJMH02000008.1 82529 84031 2 + 1503 Citrate lyase alpha chain (EC 4.1.3.6) Citrate Metabolism, Transport, and Regulation
fig|6666666.229917.peg.344 CDS AJMH02000008.1 84225 85637 3 + 1413 2-(5@1@1-triphosphoribosyl)-3@1-dephosphocoenzyme-A synthase (EC 2.7.8.25) Citrate Metabolism, Transport, and Regulation
fig|6666666.229917.peg.345 CDS AJMH02000008.1 85624 87057 1 + 1434 2-oxoglutarate/malate translocator - none -
fig|6666666.229917.peg.346 CDS AJMH02000008.1 87336 88835 3 + 1500 Putative ATP /GTP binding protein - none -
fig|6666666.229917.peg.347 CDS AJMH02000008.1 90131 89100 -2 - 1032 Aldose 1-epimerase (EC 5.1.3.3) Lactose and Galactose Uptake and Utilization;
Maltose and Maltodextrin Utilization
fig|6666666.229917.peg.348 CDS AJMH02000008.1 91279 90125 -1 - 1155 Galactokinase (EC 2.7.1.6) Lactose and Galactose Uptake and Utilization
fig|6666666.229917.peg.349 CDS AJMH02000008.1 92389 91346 -1 - 1044 Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10) Lactose and Galactose Uptake and Utilization
fig|6666666.229917.peg.350 CDS AJMH02000008.1 92636 93649 2 + 1014 Galactose operon repressor, GalR-LacI family of transcriptional regulators Lactose and Galactose Uptake and Utilization
fig|6666666.229917.peg.351 CDS AJMH02000008.1 93864 94856 3 + 993 Galactose/methyl galactoside ABC transport system, D-galactose-binding periplasmic protein MglB (TC 3.A.1.2.3) Bacterial Chemotaxis;
Lactose and Galactose Uptake and Utilization
fig|6666666.229917.peg.352 CDS AJMH02000008.1 94931 95278 2 + 348 Galactose/methyl galactoside ABC transport system, ATP-binding protein MglA (EC 3.6.3.17) Lactose and Galactose Uptake and Utilization
fig|6666666.229917.peg.353 CDS AJMH02000008.1 95309 96469 2 + 1161 Galactose/methyl galactoside ABC transport system, ATP-binding protein MglA (EC 3.6.3.17) Lactose and Galactose Uptake and Utilization
fig|6666666.229917.peg.354 CDS AJMH02000008.1 96488 97498 2 + 1011 Galactose/methyl galactoside ABC transport system, permease protein MglC (TC 3.A.1.2.3) Lactose and Galactose Uptake and Utilization
fig|6666666.229917.peg.355 CDS AJMH02000008.1 99419 97572 -2 - 1848 Aerobic respiration control sensor protein arcB (EC 2.7.3.-) - none -
fig|6666666.229917.peg.356 CDS AJMH02000008.1 99445 99579 1 + 135 hypothetical protein - none -
fig|6666666.229917.peg.357 CDS AJMH02000008.1 100780 99560 -1 - 1221 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41) Fatty Acid Biosynthesis FASII
fig|6666666.229917.peg.358 CDS AJMH02000008.1 100950 102968 3 + 2019 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) CBSS-354.1.peg.876;
RNA methylation;
Riboflavin, FMN and FAD metabolism in plants;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229917.peg.359 CDS AJMH02000008.1 103158 106229 3 + 3072 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229917.peg.360 CDS AJMH02000008.1 106918 106340 -1 - 579 Heat shock protein GrpE GroEL GroES;
Heat shock dnaK gene cluster extended;
Protein chaperones
fig|6666666.229917.peg.361 CDS AJMH02000008.1 106886 107014 2 + 129 hypothetical protein - none -
fig|6666666.229917.peg.362 CDS AJMH02000008.1 107059 107976 1 + 918 NAD kinase (EC 2.7.1.23) NAD and NADP cofactor biosynthesis global
fig|6666666.229917.peg.363 CDS AJMH02000008.1 108050 109726 2 + 1677 DNA repair protein RecN DNA repair, bacterial
fig|6666666.229917.peg.364 CDS AJMH02000008.1 110391 109744 -3 - 648 Outer membrane protein W precursor - none -
fig|6666666.229917.peg.365 CDS AJMH02000008.1 110477 110629 2 + 153 hypothetical protein - none -
fig|6666666.229917.peg.366 CDS AJMH02000008.1 110663 111421 2 + 759 Membrane protein involved in the export of O-antigen and teichoic acid - none -
fig|6666666.229917.peg.367 CDS AJMH02000008.1 111427 111978 1 + 552 Intracellular septation protein IspA CBSS-211586.9.peg.2729;
Intracellular septation in Enterobacteria
fig|6666666.229917.peg.368 CDS AJMH02000008.1 111982 112452 1 + 471 Acyl-CoA thioesterase YciA, involved in membrane biogenesis CBSS-211586.9.peg.2729;
Intracellular septation in Enterobacteria
fig|6666666.229917.peg.369 CDS AJMH02000008.1 112455 112751 3 + 297 YciL protein Broadly distributed proteins not in subsystems;
CBSS-211586.9.peg.2729
fig|6666666.229917.peg.370 CDS AJMH02000008.1 113278 115494 1 + 2217 Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) Murein Hydrolases
fig|6666666.229917.peg.371 CDS AJMH02000008.1 115527 115835 3 + 309 Transcriptional repressor protein TrpR Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate);
Tryptophan synthesis
fig|6666666.229917.peg.372 CDS AJMH02000010.1 1243 701 -1 - 543 Mobile element protein - none -
fig|6666666.229917.peg.373 CDS AJMH02000010.1 1609 2292 1 + 684 Peptidyl-tRNA hydrolase (EC 3.1.1.29) Cell division-ribosomal stress proteins cluster;
Sporulation-associated proteins with broader functions;
Transcription repair cluster;
Translation termination factors bacterial
fig|6666666.229917.peg.374 CDS AJMH02000010.1 2481 3572 3 + 1092 GTP-binding and nucleic acid-binding protein YchF - none -
fig|6666666.229917.peg.375 CDS AJMH02000010.1 3881 4462 2 + 582 Hypothetical protein VC0266 (sugar utilization related?) VC0266
fig|6666666.229917.peg.376 CDS AJMH02000010.1 4538 4684 2 + 147 hypothetical protein - none -
fig|6666666.229917.peg.377 CDS AJMH02000010.1 4826 4939 2 + 114 hypothetical protein - none -
fig|6666666.229917.peg.378 CDS AJMH02000010.1 5851 4904 -1 - 948 Cysteine synthase (EC 2.5.1.47) Cysteine Biosynthesis;
Methionine Biosynthesis
fig|6666666.229917.peg.379 CDS AJMH02000010.1 6776 5952 -2 - 825 Sulfate transporter, CysZ-type Cysteine Biosynthesis
fig|6666666.229917.peg.380 CDS AJMH02000010.1 6916 7953 1 + 1038 Cell division protein ZipA Bacterial Cytoskeleton
fig|6666666.229917.peg.381 CDS AJMH02000010.1 8055 10067 3 + 2013 DNA ligase (EC 6.5.1.2) DNA Repair Base Excision
fig|6666666.229917.peg.382 CDS AJMH02000010.1 10713 10135 -3 - 579 Thymidine kinase (EC 2.7.1.21) pyrimidine conversions
fig|6666666.229917.peg.383 CDS AJMH02000010.1 10949 10716 -2 - 234 unknown - none -
fig|6666666.229917.peg.384 CDS AJMH02000010.1 12042 11014 -3 - 1029 TsaD/Kae1/Qri7 protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Macromolecular synthesis operon;
YgjD and YeaZ;
YrdC-YciO-Sua5 protein family
fig|6666666.229917.peg.385 CDS AJMH02000010.1 12232 12065 -1 - 168 hypothetical protein - none -
fig|6666666.229917.peg.386 CDS AJMH02000010.1 12267 12482 3 + 216 SSU ribosomal protein S21p Macromolecular synthesis operon;
Ribosome SSU bacterial
fig|6666666.229917.peg.387 CDS AJMH02000010.1 12604 14361 1 + 1758 DNA primase (EC 2.7.7.-) CBSS-349161.4.peg.2417;
Macromolecular synthesis operon
fig|6666666.229917.peg.388 CDS AJMH02000010.1 14437 16287 1 + 1851 RNA polymerase sigma factor RpoD CBSS-349161.4.peg.2417;
Macromolecular synthesis operon;
Transcription initiation, bacterial sigma factors
fig|6666666.229917.peg.389 CDS AJMH02000010.1 18766 16349 -1 - 2418 ATP-dependent protease La (EC 3.4.21.53) Type I Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229917.peg.390 CDS AJMH02000010.1 19197 20951 3 + 1755 Putative sulfate permease - none -
fig|6666666.229917.peg.391 CDS AJMH02000010.1 21879 20977 -3 - 903 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229917.peg.392 CDS AJMH02000010.1 22854 22297 -3 - 558 hypothetical protein - none -
fig|6666666.229917.peg.393 CDS AJMH02000010.1 24076 22892 -1 - 1185 Mannonate dehydratase (EC 4.2.1.8) D-Galacturonate and D-Glucuronate Utilization
fig|6666666.229917.peg.394 CDS AJMH02000010.1 24851 24096 -2 - 756 Hexuronate utilization operon transcriptional repressor ExuR D-Galacturonate and D-Glucuronate Utilization
fig|6666666.229917.peg.395 CDS AJMH02000010.1 27241 24866 -1 - 2376 Alpha-glucosidase (EC 3.2.1.20) D-Galacturonate and D-Glucuronate Utilization;
Maltose and Maltodextrin Utilization
fig|6666666.229917.peg.396 CDS AJMH02000010.1 28566 27265 -3 - 1302 TRAP-type C4-dicarboxylate transport system, large permease component TRAP Transporter collection
fig|6666666.229917.peg.397 CDS AJMH02000010.1 29279 30271 2 + 993 TRAP-type C4-dicarboxylate transport system, periplasmic component TRAP Transporter collection
fig|6666666.229917.peg.398 CDS AJMH02000010.1 30326 31270 2 + 945 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) D-Galacturonate and D-Glucuronate Utilization;
D-gluconate and ketogluconates metabolism;
Entner-Doudoroff Pathway
fig|6666666.229917.peg.399 CDS AJMH02000010.1 31282 32127 1 + 846 D-mannonate oxidoreductase (EC 1.1.1.57) D-Galacturonate and D-Glucuronate Utilization
fig|6666666.229917.peg.400 CDS AJMH02000010.1 32137 33540 1 + 1404 Uronate isomerase (EC 5.3.1.12) D-Galacturonate and D-Glucuronate Utilization
fig|6666666.229917.peg.401 CDS AJMH02000010.1 33549 34190 3 + 642 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) D-Galacturonate and D-Glucuronate Utilization;
Entner-Doudoroff Pathway
fig|6666666.229917.peg.402 CDS AJMH02000010.1 35322 34276 -3 - 1047 iron chelatin ABC transporter periplasmic-binding protein - none -
fig|6666666.229917.peg.403 CDS AJMH02000010.1 35623 35504 -1 - 120 hypothetical protein - none -
fig|6666666.229917.peg.404 CDS AJMH02000010.1 36864 35632 -3 - 1233 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) Glycine and Serine Utilization;
Pyridoxin (Vitamin B6) Biosynthesis;
Serine Biosynthesis
fig|6666666.229917.peg.405 CDS AJMH02000010.1 37539 36883 -3 - 657 Ribose 5-phosphate isomerase A (EC 5.3.1.6) D-ribose utilization;
Pentose phosphate pathway
fig|6666666.229917.peg.406 CDS AJMH02000010.1 38807 37638 -2 - 1170 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB CBSS-630.2.peg.3360;
Heat shock dnaK gene cluster extended;
Heme and Siroheme Biosynthesis;
Queuosine-Archaeosine Biosynthesis
fig|6666666.229917.peg.407 CDS AJMH02000010.1 39130 38807 -1 - 324 PlcB, ORFX, ORFP, ORFB, ORFA, ldh gene - none -
fig|6666666.229917.peg.408 CDS AJMH02000010.1 39849 39169 -3 - 681 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) Heat shock dnaK gene cluster extended;
Housecleaning nucleoside triphosphate pyrophosphatases
fig|6666666.229917.peg.409 CDS AJMH02000010.1 40204 39875 -1 - 330 DNA uptake protein and related DNA-binding proteins - none -
fig|6666666.229917.peg.410 CDS AJMH02000010.1 40206 40361 3 + 156 hypothetical protein - none -
fig|6666666.229917.peg.411 CDS AJMH02000010.1 41381 40494 -2 - 888 HflC protein Hfl operon;
Scaffold proteins for [4Fe-4S] cluster assembly (MRP family)
fig|6666666.229917.peg.412 CDS AJMH02000010.1 42634 41381 -1 - 1254 HflK protein Hfl operon;
Scaffold proteins for [4Fe-4S] cluster assembly (MRP family)
fig|6666666.229917.peg.413 CDS AJMH02000010.1 43473 42730 -3 - 744 4@1-phosphopantetheinyl transferase (EC 2.7.8.-) Fatty Acid Biosynthesis FASII
fig|6666666.229917.peg.414 CDS AJMH02000010.1 44782 43508 -1 - 1275 Threonine synthase (EC 4.2.3.1) Threonine and Homoserine Biosynthesis
fig|6666666.229917.peg.415 CDS AJMH02000010.1 45278 44838 -2 - 441 hypothetical protein - none -
fig|6666666.229917.peg.416 CDS AJMH02000010.1 46250 45306 -2 - 945 Homoserine kinase (EC 2.7.1.39) CBSS-269482.1.peg.1294;
Methionine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229917.peg.417 CDS AJMH02000010.1 48710 46263 -2 - 2448 Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) CBSS-216591.1.peg.168;
Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch;
Methionine Biosynthesis;
Threonine and Homoserine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229917.peg.418 CDS AJMH02000010.1 48930 48799 -3 - 132 hypothetical protein - none -
fig|6666666.229917.peg.419 CDS AJMH02000010.1 49021 50457 1 + 1437 Nicotinamide phosphoribosyltransferase (EC 2.4.2.12) NAD and NADP cofactor biosynthesis global
fig|6666666.229917.peg.420 CDS AJMH02000010.1 50450 51145 2 + 696 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC A Hypothetical Protein Related to Proline Metabolism;
CBSS-630.2.peg.3360
fig|6666666.229917.peg.421 CDS AJMH02000010.1 52034 51198 -2 - 837 L-proline glycine betaine ABC transport system permease protein ProV (TC 3.A.1.12.1) Choline and Betaine Uptake and Betaine Biosynthesis
fig|6666666.229917.peg.422 CDS AJMH02000010.1 53281 52349 -1 - 933 L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1) / Osmotic adaptation Choline and Betaine Uptake and Betaine Biosynthesis
fig|6666666.229917.peg.423 CDS AJMH02000011.1 2898 67 -3 - 2832 Excinuclease ABC subunit A DNA repair, UvrABC system
fig|6666666.229917.peg.424 CDS AJMH02000011.1 3068 3547 2 + 480 Single-stranded DNA-binding protein DNA repair, bacterial;
DNA repair, bacterial RecFOR pathway
fig|6666666.229917.peg.425 CDS AJMH02000011.1 4507 3653 -1 - 855 Methyl-directed repair DNA adenine methylase (EC 2.1.1.72) DNA repair, bacterial
fig|6666666.229917.peg.426 CDS AJMH02000011.1 5598 4510 -3 - 1089 3-dehydroquinate synthase (EC 4.2.3.4) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate);
Type IV pilus
fig|6666666.229917.peg.427 CDS AJMH02000011.1 6149 5622 -2 - 528 Shikimate kinase I (EC 2.7.1.71) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229917.peg.428 CDS AJMH02000011.1 7772 6363 -2 - 1410 Type IV pilus biogenesis protein PilQ; Competence protein E DNA uptake cluster;
Type IV pilus
fig|6666666.229917.peg.429 CDS AJMH02000011.1 8184 7792 -3 - 393 Type IV pilus biogenesis protein PilQ; Competence protein D DNA uptake cluster;
Type IV pilus
fig|6666666.229917.peg.430 CDS AJMH02000011.1 8708 8184 -2 - 525 Competence protein C; Chromosome segregation ATPases DNA uptake cluster
fig|6666666.229917.peg.431 CDS AJMH02000011.1 9223 8705 -1 - 519 Type IV pilus biogenesis protein PilN; Competence protein B DNA uptake cluster;
Type IV pilus
fig|6666666.229917.peg.432 CDS AJMH02000011.1 10043 9234 -2 - 810 Type IV pilus biogenesis protein PilM; Competence protein A DNA uptake cluster;
Type IV pilus
fig|6666666.229917.peg.433 CDS AJMH02000011.1 10177 12744 1 + 2568 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) DNA uptake cluster;
Peptidoglycan Biosynthesis;
Type IV pilus
fig|6666666.229917.peg.434 CDS AJMH02000011.1 12839 13684 2 + 846 Protein involved in catabolism of external DNA DNA processing cluster;
DNA uptake cluster
fig|6666666.229917.peg.435 CDS AJMH02000011.1 13779 15149 3 + 1371 Glutathione reductase (EC 1.8.1.7) Glutathione: Redox cycle
fig|6666666.229917.peg.436 CDS AJMH02000011.1 15926 15282 -2 - 645 Cyclic AMP receptor protein cAMP signaling in bacteria
fig|6666666.229917.peg.437 CDS AJMH02000011.1 16182 15964 -3 - 219 FIG00696234: hypothetical protein - none -
fig|6666666.229917.peg.438 CDS AJMH02000011.1 16805 16206 -2 - 600 Transcriptional regulator SlmA, TetR family - none -
fig|6666666.229917.peg.439 CDS AJMH02000011.1 17260 16805 -1 - 456 Deoxyuridine 5@1-triphosphate nucleotidohydrolase (EC 3.6.1.23) Housecleaning nucleoside triphosphate pyrophosphatases;
Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229917.peg.440 CDS AJMH02000011.1 18528 17329 -3 - 1200 Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) / Phosphopantothenoylcysteine synthetase (EC 6.3.2.5) Coenzyme A Biosynthesis;
Coenzyme A Biosynthesis
fig|6666666.229917.peg.441 CDS AJMH02000011.1 18503 18655 2 + 153 hypothetical protein - none -
fig|6666666.229917.peg.442 CDS AJMH02000011.1 18706 19365 1 + 660 DNA repair protein RadC DNA repair, bacterial
fig|6666666.229917.peg.443 CDS AJMH02000011.1 19637 19810 2 + 174 LSU ribosomal protein L28p Ribosome LSU bacterial
fig|6666666.229917.peg.444 CDS AJMH02000011.1 19822 19992 1 + 171 LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-independent Ribosome LSU bacterial;
Ribosome LSU bacterial
fig|6666666.229917.peg.445 CDS AJMH02000011.1 20032 20889 1 + 858 Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) DNA Repair Base Excision
fig|6666666.229917.peg.446 CDS AJMH02000011.1 21944 20892 -2 - 1053 COG0859: ADP-heptose:LPS heptosyltransferase - none -
fig|6666666.229917.peg.447 CDS AJMH02000011.1 22976 21954 -2 - 1023 COG0859: ADP-heptose:LPS heptosyltransferase - none -
fig|6666666.229917.peg.448 CDS AJMH02000011.1 23669 22977 -2 - 693 Beta-1,4-galactosyltransferase LOS core oligosaccharide biosynthesis
fig|6666666.229917.peg.449 CDS AJMH02000011.1 23944 23732 -1 - 213 LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-dependent Ribosome LSU bacterial;
Ribosome LSU bacterial
fig|6666666.229917.peg.450 CDS AJMH02000011.1 24202 25050 1 + 849 Lipooligosaccharide biosynthesis protein lex-1 (EC 2.-.-.-) - none -
fig|6666666.229917.peg.451 CDS AJMH02000011.1 25059 26063 3 + 1005 putative capsular polysaccharide synthesis protein - none -
fig|6666666.229917.peg.452 CDS AJMH02000011.1 26933 26070 -2 - 864 Involved in lipopolysaccharide biosynthesis - none -
fig|6666666.229917.peg.453 CDS AJMH02000011.1 27161 29359 2 + 2199 Helicase PriA essential for oriC/DnaA-independent DNA replication Conserved gene cluster associated with Met-tRNA formyltransferase
fig|6666666.229917.peg.454 CDS AJMH02000011.1 29469 30281 3 + 813 Cell division protein - none -
fig|6666666.229917.peg.455 CDS AJMH02000011.1 30481 31047 1 + 567 Probable Co/Zn/Cd efflux system membrane fusion protein Cobalt-zinc-cadmium resistance
fig|6666666.229917.peg.456 CDS AJMH02000011.1 31073 32269 2 + 1197 Probable Co/Zn/Cd efflux system membrane fusion protein Cobalt-zinc-cadmium resistance
fig|6666666.229917.peg.457 CDS AJMH02000011.1 32283 35381 3 + 3099 RND multidrug efflux transporter; Acriflavin resistance protein Multidrug Resistance Efflux Pumps
fig|6666666.229917.peg.458 CDS AJMH02000011.1 35481 35350 -3 - 132 hypothetical protein - none -
fig|6666666.229917.peg.459 CDS AJMH02000011.1 35535 36335 3 + 801 Orf2 - none -
fig|6666666.229917.peg.460 CDS AJMH02000011.1 36988 37935 1 + 948 Magnesium and cobalt transport protein CorA Magnesium transport
fig|6666666.229917.peg.461 CDS AJMH02000011.1 37951 38511 1 + 561 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) CBSS-630.2.peg.3360
fig|6666666.229917.peg.462 CDS AJMH02000011.1 38536 38829 1 + 294 COG1872 - none -
fig|6666666.229917.peg.463 CDS AJMH02000011.1 38946 39605 3 + 660 Oxygen-insensitive NAD(P)H nitroreductase (EC 1.-.-.-) / Dihydropteridine reductase (EC 1.5.1.34) - none -
fig|6666666.229917.peg.464 CDS AJMH02000011.1 39670 41643 1 + 1974 Phosphoglycerol transferase I (EC 2.7.8.20) Synthesis of osmoregulated periplasmic glucans
fig|6666666.229917.peg.465 CDS AJMH02000011.1 42550 41813 -1 - 738 COG1496: Uncharacterized conserved protein - none -
fig|6666666.229917.peg.466 CDS AJMH02000011.1 43526 42552 -2 - 975 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) RNA pseudouridine syntheses;
Ribosome biogenesis bacterial
fig|6666666.229917.peg.467 CDS AJMH02000011.1 43633 44421 1 + 789 Probable component of the lipoprotein assembly complex (forms a complex with YaeT, YfgL, and NlpB) Lipopolysaccharide assembly
fig|6666666.229917.peg.468 CDS AJMH02000011.1 45032 44457 -2 - 576 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) 5-FCL-like protein;
Folate Biosynthesis;
One-carbon metabolism by tetrahydropterines;
Serine-glyoxylate cycle
fig|6666666.229917.peg.469 CDS AJMH02000011.1 45652 45326 -1 - 327 Z-ring-associated protein ZapA Bacterial Cytoskeleton
fig|6666666.229917.peg.470 CDS AJMH02000011.1 45811 46359 1 + 549 FIG001590: Putative conserved exported protein precursor CBSS-87626.3.peg.3639
fig|6666666.229917.peg.471 CDS AJMH02000011.1 46389 47675 3 + 1287 Xaa-Pro aminopeptidase (EC 3.4.11.9) Aminopeptidases (EC 3.4.11.-);
CBSS-87626.3.peg.3639
fig|6666666.229917.peg.472 CDS AJMH02000011.1 47985 47830 -3 - 156 hypothetical protein - none -
fig|6666666.229917.peg.473 CDS AJMH02000011.1 48171 48419 3 + 249 SSU ribosomal protein S16p Ribosome SSU bacterial
fig|6666666.229917.peg.474 CDS AJMH02000011.1 48445 48972 1 + 528 16S rRNA processing protein RimM Ribosome biogenesis bacterial
fig|6666666.229917.peg.475 CDS AJMH02000011.1 49038 49787 3 + 750 tRNA (Guanine37-N1) -methyltransferase (EC 2.1.1.31) RNA methylation;
Ribosome biogenesis bacterial;
tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229917.peg.476 CDS AJMH02000011.1 49813 50163 1 + 351 LSU ribosomal protein L19p Ribosome LSU bacterial
fig|6666666.229917.peg.477 CDS AJMH02000011.1 50761 50273 -1 - 489 Rod shape-determining protein MreD Bacterial Cell Division;
Bacterial Cytoskeleton;
CBSS-354.1.peg.2917
fig|6666666.229917.peg.478 CDS AJMH02000011.1 51834 50761 -3 - 1074 Rod shape-determining protein MreC Bacterial Cell Division;
Bacterial Cytoskeleton;
CBSS-354.1.peg.2917
fig|6666666.229917.peg.479 CDS AJMH02000011.1 52959 51904 -3 - 1056 Rod shape-determining protein MreB Bacterial Cell Division;
Bacterial Cytoskeleton
fig|6666666.229917.peg.480 CDS AJMH02000011.1 53209 55614 1 + 2406 3@1-to-5@1 exoribonuclease RNase R RNA processing and degradation, bacterial
fig|6666666.229917.peg.481 CDS AJMH02000011.1 55611 56348 3 + 738 23S rRNA (guanosine-2@1-O-) -methyltransferase rlmB (EC 2.1.1.-) RNA methylation
fig|6666666.229917.peg.482 CDS AJMH02000011.1 56681 58123 2 + 1443 Glycerol-3-phosphate transporter - none -
fig|6666666.229917.peg.483 CDS AJMH02000011.1 58357 59439 1 + 1083 Glycerophosphoryl diester phosphodiesterase, periplasmic (EC 3.1.4.46) - none -
fig|6666666.229917.peg.484 CDS AJMH02000011.1 60614 59496 -2 - 1119 Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake CBSS-272943.3.peg.1367;
Conserved gene cluster associated with Met-tRNA formyltransferase;
YrdC-YciO-Sua5 protein family
fig|6666666.229917.peg.485 CDS AJMH02000011.1 61283 60834 -2 - 450 LSU ribosomal protein L9p Primosomal replication protein N clusters with ribosomal proteins;
Ribosome LSU bacterial
fig|6666666.229917.peg.486 CDS AJMH02000011.1 61529 61299 -2 - 231 SSU ribosomal protein S18p @ SSU ribosomal protein S18p, zinc-independent Primosomal replication protein N clusters with ribosomal proteins;
Ribosome SSU bacterial;
Ribosome SSU bacterial
fig|6666666.229917.peg.487 CDS AJMH02000011.1 61868 61542 -2 - 327 Primosomal replication protein N Primosomal replication protein N clusters with ribosomal proteins
fig|6666666.229917.peg.488 CDS AJMH02000011.1 62232 61855 -3 - 378 SSU ribosomal protein S6p Primosomal replication protein N clusters with ribosomal proteins;
Ribosome SSU bacterial
fig|6666666.229917.peg.489 CDS AJMH02000011.1 63007 62384 -1 - 624 SOS-response repressor and protease LexA (EC 3.4.21.88) DNA repair, bacterial
fig|6666666.229917.peg.490 CDS AJMH02000011.1 63215 65653 2 + 2439 Glycerol-3-phosphate acyltransferase (EC 2.3.1.15) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229917.peg.491 CDS AJMH02000011.1 67538 65694 -2 - 1845 Lipid A export ATP-binding/permease protein MsbA - none -
fig|6666666.229917.peg.492 CDS AJMH02000011.1 68543 67626 -2 - 918 transcriptional regulator MtrA - none -
fig|6666666.229917.peg.493 CDS AJMH02000011.1 68647 68988 1 + 342 Possible carboxymuconolactone decarboxylase family protein (EC 4.1.1.44) - none -
fig|6666666.229917.peg.494 CDS AJMH02000011.1 70128 69085 -3 - 1044 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) LOS core oligosaccharide biosynthesis
fig|6666666.229917.peg.495 CDS AJMH02000011.1 70217 70942 2 + 726 3-deoxy-D-manno-octulosonic acid kinase (EC 2.7.1.-) - none -
fig|6666666.229917.peg.496 CDS AJMH02000011.1 71489 71004 -2 - 486 Phosphopantetheine adenylyltransferase (EC 2.7.7.3) CBSS-266117.6.peg.1260;
CBSS-269801.1.peg.1715;
Coenzyme A Biosynthesis
fig|6666666.229917.peg.497 CDS AJMH02000011.1 72773 71490 -2 - 1284 3-deoxy-D-manno-octulosonic-acid transferase (EC 2.-.-.-) KDO2-Lipid A biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.229917.peg.498 CDS AJMH02000011.1 72872 73633 2 + 762 Lipopolysaccharide biosynthesis glycosyltransferase - none -
fig|6666666.229917.peg.499 CDS AJMH02000011.1 73906 74085 1 + 180 hypothetical protein - none -
fig|6666666.229917.peg.500 CDS AJMH02000011.1 75499 74330 -1 - 1170 Lipoprotein NlpD Stationary phase repair cluster
fig|6666666.229917.peg.501 CDS AJMH02000011.1 75707 75516 -2 - 192 Cobalamin biosynthesis protein CobN and related Mg-chelatases - none -
fig|6666666.229917.peg.502 CDS AJMH02000011.1 76297 75722 -1 - 576 FIG139438: lipoprotein B Stationary phase repair cluster
fig|6666666.229917.peg.503 CDS AJMH02000011.1 77065 76325 -1 - 741 5-nucleotidase SurE (EC 3.1.3.5) @ Exopolyphosphatase (EC 3.6.1.11) Housecleaning nucleoside triphosphate pyrophosphatases;
Phosphate metabolism;
Polyphosphate;
Stationary phase repair cluster
fig|6666666.229917.peg.504 CDS AJMH02000011.1 78108 77098 -3 - 1011 tRNA pseudouridine 13 synthase (EC 4.2.1.-) Stationary phase repair cluster;
tRNA modification Archaea;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229917.peg.505 CDS AJMH02000011.1 78584 78105 -2 - 480 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis;
Stationary phase repair cluster
fig|6666666.229917.peg.506 CDS AJMH02000011.1 79276 78581 -1 - 696 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC 2.7.7.60) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis;
Stationary phase repair cluster
fig|6666666.229917.peg.507 CDS AJMH02000011.1 79554 79276 -3 - 279 Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage Bacterial Cell Division;
Bacterial Cytoskeleton;
Cell division-ribosomal stress proteins cluster;
Stationary phase repair cluster
fig|6666666.229917.peg.508 CDS AJMH02000011.1 79706 80380 2 + 675 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) Conserved gene cluster associated with Met-tRNA formyltransferase;
Pentose phosphate pathway;
Riboflavin synthesis cluster
fig|6666666.229917.peg.509 CDS AJMH02000011.1 80383 81057 1 + 675 Phosphoglycolate phosphatase (EC 3.1.3.18) 2-phosphoglycolate salvage;
Glycolate, glyoxylate interconversions
fig|6666666.229917.peg.510 CDS AJMH02000011.1 81338 81988 2 + 651 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) Bacterial Cell Division
fig|6666666.229917.peg.511 CDS AJMH02000011.1 81997 82932 1 + 936 Cell division protein FtsX Bacterial Cell Division
fig|6666666.229917.peg.512 CDS AJMH02000011.1 83482 83066 -1 - 417 Threonine dehydratase biosynthetic (EC 4.3.1.19) - none -
fig|6666666.229917.peg.513 CDS AJMH02000011.1 83940 83533 -3 - 408 Threonine dehydratase biosynthetic (EC 4.3.1.19) - none -
fig|6666666.229917.peg.514 CDS AJMH02000011.1 84850 84014 -1 - 837 Acetolactate synthase large subunit (EC 2.2.1.6) - none -
fig|6666666.229917.peg.515 CDS AJMH02000011.1 85185 86003 3 + 819 Cof protein, HD superfamily hydrolase Housecleaning nucleoside triphosphate pyrophosphatases
fig|6666666.229917.peg.516 CDS AJMH02000011.1 86964 86041 -3 - 924 Lysophospholipase L2 (EC 3.1.1.5) Triacylglycerol metabolism
fig|6666666.229917.peg.517 CDS AJMH02000011.1 88099 86957 -1 - 1143 O-antigen ligase LOS core oligosaccharide biosynthesis
fig|6666666.229917.peg.518 CDS AJMH02000011.1 88133 88294 2 + 162 hypothetical protein - none -
fig|6666666.229917.peg.519 CDS AJMH02000011.1 89386 88307 -1 - 1080 Fructose-bisphosphate aldolase class II (EC 4.1.2.13) Glycolysis and Gluconeogenesis
fig|6666666.229917.peg.520 CDS AJMH02000011.1 90614 89451 -2 - 1164 Phosphoglycerate kinase (EC 2.7.2.3) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis
fig|6666666.229917.peg.521 CDS AJMH02000011.1 91422 90727 -3 - 696 Probable ribonuclease HI0526 precursor - none -
fig|6666666.229917.peg.522 CDS AJMH02000011.1 91529 91750 2 + 222 4Fe-4S ferredoxin, iron-sulfur binding - none -
fig|6666666.229917.peg.523 CDS AJMH02000011.1 92892 91816 -3 - 1077 hypothetical tRNA/rRNA methyltransferase yfiF [EC:2.1.1.-] RNA methylation;
tRNA modification Bacteria
fig|6666666.229917.peg.524 CDS AJMH02000011.1 93078 94445 3 + 1368 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229917.peg.525 CDS AJMH02000012.1 1861 731 -1 - 1131 putative phage-related secreted protein - none -
fig|6666666.229917.peg.526 CDS AJMH02000012.1 2174 1869 -2 - 306 putative phage-related membrane protein - none -
fig|6666666.229917.peg.527 CDS AJMH02000012.1 3351 2182 -3 - 1170 hypothetical protein - none -
fig|6666666.229917.peg.528 CDS AJMH02000012.1 3682 3461 -1 - 222 hypothetical protein - none -
fig|6666666.229917.peg.529 CDS AJMH02000012.1 4489 4160 -1 - 330 putative single stranded DNA-binding protien - none -
fig|6666666.229917.peg.530 CDS AJMH02000012.1 5655 4510 -3 - 1146 FIG00698503: hypothetical protein - none -
fig|6666666.229917.peg.531 CDS AJMH02000012.1 5788 6000 1 + 213 hypothetical protein - none -
fig|6666666.229917.peg.532 CDS AJMH02000012.1 6079 6327 1 + 249 hypothetical protein - none -
fig|6666666.229917.peg.533 CDS AJMH02000013.1 897 775 -3 - 123 hypothetical protein - none -
fig|6666666.229917.peg.534 CDS AJMH02000013.1 1035 2507 3 + 1473 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229917.peg.535 CDS AJMH02000013.1 2810 5080 2 + 2271 Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) Ribonucleotide reduction
fig|6666666.229917.peg.536 CDS AJMH02000013.1 5134 5790 1 + 657 hypothetical protein - none -
fig|6666666.229917.peg.537 CDS AJMH02000013.1 5992 7122 1 + 1131 Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) Ribonucleotide reduction
fig|6666666.229917.peg.538 CDS AJMH02000013.1 7144 7413 1 + 270 hypothetical protein - none -
fig|6666666.229917.peg.539 CDS AJMH02000013.1 7481 7729 2 + 249 Ferredoxin Soluble cytochromes and functionally related electron carriers
fig|6666666.229917.peg.540 CDS AJMH02000013.1 8708 7896 -2 - 813 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229917.peg.541 CDS AJMH02000013.1 9353 8730 -2 - 624 L-lysine permease - none -
fig|6666666.229917.peg.542 CDS AJMH02000013.1 9853 9362 -1 - 492 Phosphatidylglycerophosphatase A (EC 3.1.3.27) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Riboflavin synthesis cluster
fig|6666666.229917.peg.543 CDS AJMH02000013.1 10846 9863 -1 - 984 Thiamine-monophosphate kinase (EC 2.7.4.16) 5-FCL-like protein;
Riboflavin synthesis cluster;
Thiamin biosynthesis
fig|6666666.229917.peg.544 CDS AJMH02000013.1 11290 10865 -1 - 426 Transcription termination protein NusB Riboflavin synthesis cluster;
Transcription factors bacterial
fig|6666666.229917.peg.545 CDS AJMH02000013.1 11770 11297 -1 - 474 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster
fig|6666666.229917.peg.546 CDS AJMH02000013.1 13559 11910 -2 - 1650 Glucose-6-phosphate isomerase (EC 5.3.1.9) Glycolysis and Gluconeogenesis
fig|6666666.229917.peg.547 CDS AJMH02000013.1 14657 13575 -2 - 1083 Alanine racemase (EC 5.1.1.1) ## biosynthetic Alanine biosynthesis;
Pyruvate Alanine Serine Interconversions
fig|6666666.229917.peg.548 CDS AJMH02000013.1 16087 14681 -1 - 1407 Replicative DNA helicase (EC 3.6.1.-) - none -
fig|6666666.229917.peg.549 CDS AJMH02000013.1 16102 16224 1 + 123 hypothetical protein - none -
fig|6666666.229917.peg.550 CDS AJMH02000013.1 17312 16233 -2 - 1080 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha (EC 2.5.1.54) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229917.peg.551 CDS AJMH02000013.1 18663 17413 -3 - 1251 Lipoprotein releasing system transmembrane protein LolE Lipopolysaccharide assembly;
Lipoprotein sorting system
fig|6666666.229917.peg.552 CDS AJMH02000013.1 19349 18663 -2 - 687 Lipoprotein releasing system ATP-binding protein LolD Lipopolysaccharide assembly;
Lipoprotein sorting system
fig|6666666.229917.peg.553 CDS AJMH02000013.1 20548 19364 -1 - 1185 Lipoprotein releasing system transmembrane protein LolC Lipopolysaccharide assembly;
Lipoprotein sorting system
fig|6666666.229917.peg.554 CDS AJMH02000013.1 22035 21091 -3 - 945 Hydroxypyruvate reductase (EC 1.1.1.81) Glycerate metabolism;
Glycolate, glyoxylate interconversions
fig|6666666.229917.peg.555 CDS AJMH02000013.1 22757 22191 -2 - 567 Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Folate Biosynthesis;
Tryptophan synthesis
fig|6666666.229917.peg.556 CDS AJMH02000013.1 22859 23833 2 + 975 Para-aminobenzoate synthase, aminase component (EC 2.6.1.85) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Folate Biosynthesis;
Tryptophan synthesis
fig|6666666.229917.peg.557 CDS AJMH02000013.1 23836 24423 1 + 588 Aminodeoxychorismate lyase (EC 4.1.3.38) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Folate Biosynthesis;
Tryptophan synthesis
fig|6666666.229917.peg.558 CDS AJMH02000013.1 26236 24698 -1 - 1539 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229917.peg.559 CDS AJMH02000013.1 26657 26292 -2 - 366 FIG039061: hypothetical protein related to heme utilization - none -
fig|6666666.229917.peg.560 CDS AJMH02000013.1 26799 28838 3 + 2040 Oligopeptidase A (EC 3.4.24.70) Protein degradation
fig|6666666.229917.peg.561 CDS AJMH02000013.1 29464 28964 -1 - 501 PTS system, glucose-specific IIA component - none -
fig|6666666.229917.peg.562 CDS AJMH02000013.1 31252 29525 -1 - 1728 Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) Fructose utilization;
Mannitol Utilization
fig|6666666.229917.peg.563 CDS AJMH02000013.1 31623 31366 -3 - 258 Phosphotransferase system, phosphocarrier protein HPr Fructose utilization;
Mannitol Utilization
fig|6666666.229917.peg.564 CDS AJMH02000013.1 32884 31844 -1 - 1041 Ribosome small subunit-stimulated GTPase EngC - none -
fig|6666666.229917.peg.565 CDS AJMH02000013.1 32955 33503 3 + 549 3@1-to-5@1 oligoribonuclease (orn) RNA processing and degradation, bacterial
fig|6666666.229917.peg.566 CDS AJMH02000013.1 33911 35536 2 + 1626 Dca - none -
fig|6666666.229917.peg.567 CDS AJMH02000013.1 35565 36182 3 + 618 Glycerate kinase (EC 2.7.1.31) D-galactarate, D-glucarate and D-glycerate catabolism;
D-galactarate, D-glucarate and D-glycerate catabolism - gjo;
Glycerate metabolism;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Glycine and Serine Utilization;
Serine-glyoxylate cycle
fig|6666666.229917.peg.568 CDS AJMH02000013.1 36169 37677 1 + 1509 conserved domain protein - none -
fig|6666666.229917.peg.569 CDS AJMH02000013.1 37689 38609 3 + 921 RfbJ protein - none -
fig|6666666.229917.peg.570 CDS AJMH02000013.1 38997 40790 3 + 1794 Mlr4739 protein - none -
fig|6666666.229917.peg.571 CDS AJMH02000013.1 40971 40843 -3 - 129 hypothetical protein - none -
fig|6666666.229917.peg.572 CDS AJMH02000013.1 40988 41440 2 + 453 TsaE protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA Scaffold proteins for [4Fe-4S] cluster assembly (MRP family);
YjeE;
YrdC-YciO-Sua5 protein family
fig|6666666.229917.peg.573 CDS AJMH02000013.1 41437 42924 1 + 1488 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) Murein Hydrolases;
Recycling of Peptidoglycan Amino Acids
fig|6666666.229917.peg.574 CDS AJMH02000013.1 42924 44774 3 + 1851 DNA mismatch repair protein MutL DNA repair, bacterial MutL-MutS system
fig|6666666.229917.peg.575 CDS AJMH02000013.1 44789 45733 2 + 945 tRNA dimethylallyltransferase (EC 2.5.1.75) tRNA modification Bacteria;
tRNA processing
fig|6666666.229917.peg.576 CDS AJMH02000013.1 45853 46149 1 + 297 RNA-binding protein Hfq Hfl operon;
Polyadenylation bacterial
fig|6666666.229917.peg.577 CDS AJMH02000013.1 46164 46313 3 + 150 GTP-binding protein HflX Hfl operon
fig|6666666.229917.peg.578 CDS AJMH02000013.1 46398 46532 3 + 135 hypothetical protein - none -
fig|6666666.229917.peg.579 CDS AJMH02000013.1 47488 46529 -1 - 960 Transcriptional repressor protein TyrR Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate);
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229917.peg.580 CDS AJMH02000013.1 48651 47572 -3 - 1080 Membrane protein YcjF A conserved operon linked to TyrR and possibly involved in virulence
fig|6666666.229917.peg.581 CDS AJMH02000013.1 50080 48665 -1 - 1416 Conserved protein YcjX with nucleoside triphosphate hydrolase domain A conserved operon linked to TyrR and possibly involved in virulence
fig|6666666.229917.peg.582 CDS AJMH02000013.1 50346 51977 3 + 1632 Peptide transport periplasmic protein sapA (TC 3.A.1.5.5) - none -
fig|6666666.229917.peg.583 CDS AJMH02000013.1 51977 52942 2 + 966 Peptide transport system permease protein SapB - none -
fig|6666666.229917.peg.584 CDS AJMH02000013.1 52932 53819 3 + 888 Peptide transport system permease protein SapC - none -
fig|6666666.229917.peg.585 CDS AJMH02000013.1 53827 54879 1 + 1053 Peptide transport system ATP-binding protein SapD - none -
fig|6666666.229917.peg.586 CDS AJMH02000013.1 54883 55701 1 + 819 Peptide transport system ATP-binding protein SapF - none -
fig|6666666.229917.peg.587 CDS AJMH02000014.1 3369 589 -3 - 2781 FIG00696772: hypothetical protein - none -
fig|6666666.229917.peg.588 CDS AJMH02000014.1 3545 3369 -2 - 177 hypothetical protein - none -
fig|6666666.229917.peg.589 CDS AJMH02000014.1 3824 3579 -2 - 246 hypothetical protein - none -
fig|6666666.229917.peg.590 CDS AJMH02000014.1 4169 3837 -2 - 333 Phage FAD/FMN-containing dehydrogenase - none -
fig|6666666.229917.peg.591 CDS AJMH02000014.1 4719 4303 -3 - 417 Protein ygiW precursor - none -
fig|6666666.229917.peg.592 CDS AJMH02000014.1 5092 6009 1 + 918 formate dehydrogenase formation protein FdhE Formate hydrogenase
fig|6666666.229917.peg.593 CDS AJMH02000014.1 7099 6083 -1 - 1017 2@1,3@1-cyclic-nucleotide 2@1-phosphodiesterase (EC 3.1.4.16) Purine conversions;
pyrimidine conversions
fig|6666666.229917.peg.594 CDS AJMH02000014.1 8059 7103 -1 - 957 2@1,3@1-cyclic-nucleotide 2@1-phosphodiesterase (EC 3.1.4.16) Purine conversions;
pyrimidine conversions
fig|6666666.229917.peg.595 CDS AJMH02000014.1 8033 8215 2 + 183 hypothetical protein - none -
fig|6666666.229917.peg.596 CDS AJMH02000014.1 8288 9187 2 + 900 Iron compound ABC uptake transporter substrate-binding protein PiuA - none -
fig|6666666.229917.peg.597 CDS AJMH02000014.1 9247 10212 1 + 966 Ferric anguibactin transport system permease protein fatD - none -
fig|6666666.229917.peg.598 CDS AJMH02000014.1 10220 11143 2 + 924 Ferric vibriobactin, enterobactin transport system, permease protein VctG (TC 3.A.1.14.6) - none -
fig|6666666.229917.peg.599 CDS AJMH02000014.1 11155 11913 1 + 759 Iron(III) dicitrate transport ATP-binding protein FecE (TC 3.A.1.14.1) - none -
fig|6666666.229917.peg.600 CDS AJMH02000014.1 13451 12021 -2 - 1431 Cell wall endopeptidase, family M23/M37 Glutaredoxins
fig|6666666.229917.peg.601 CDS AJMH02000014.1 13741 14514 1 + 774 Zinc ABC transporter, ATP-binding protein ZnuC - none -
fig|6666666.229917.peg.602 CDS AJMH02000014.1 14526 15311 3 + 786 Zinc ABC transporter, inner membrane permease protein ZnuB - none -
fig|6666666.229917.peg.603 CDS AJMH02000014.1 17073 15706 -3 - 1368 sodium-dependent transporter - none -
fig|6666666.229917.peg.604 CDS AJMH02000014.1 17733 17098 -3 - 636 Endonuclease III (EC 4.2.99.18) DNA Repair Base Excision
fig|6666666.229917.peg.605 CDS AJMH02000014.1 18665 17880 -2 - 786 Electron transport complex protein RnfE Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229917.peg.606 CDS AJMH02000014.1 19278 18658 -3 - 621 Electron transport complex protein RnfG Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229917.peg.607 CDS AJMH02000014.1 20364 19285 -3 - 1080 Electron transport complex protein RnfD Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229917.peg.608 CDS AJMH02000014.1 22327 20375 -1 - 1953 Electron transport complex protein RnfC Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229917.peg.609 CDS AJMH02000014.1 22918 22328 -1 - 591 Electron transport complex protein RnfB Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229917.peg.610 CDS AJMH02000014.1 23499 22918 -3 - 582 Electron transport complex protein RnfA Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229917.peg.611 CDS AJMH02000014.1 24577 23690 -1 - 888 Cell division inhibitor CBSS-83333.1.peg.946;
Persister Cells
fig|6666666.229917.peg.612 CDS AJMH02000014.1 25068 24601 -3 - 468 Arginine pathway regulatory protein ArgR, repressor of arg regulon Arginine Deiminase Pathway;
Arginine and Ornithine Degradation
fig|6666666.229917.peg.613 CDS AJMH02000014.1 25324 26259 1 + 936 Malate dehydrogenase (EC 1.1.1.37) Serine-glyoxylate cycle;
TCA Cycle
fig|6666666.229917.peg.614 CDS AJMH02000014.1 27155 26415 -2 - 741 FIG00698611: hypothetical protein - none -
fig|6666666.229917.peg.615 CDS AJMH02000014.1 28542 27523 -3 - 1020 Branched-chain amino acid aminotransferase (EC 2.6.1.42) Alanine biosynthesis;
Pyruvate Alanine Serine Interconversions
fig|6666666.229917.peg.616 CDS AJMH02000014.1 29004 29909 3 + 906 Glycine cleavage system transcriptional activator GcvA LysR-family proteins in Escherichia coli;
Orphan regulatory proteins
fig|6666666.229917.peg.617 CDS AJMH02000014.1 29929 30990 1 + 1062 LSU rRNA 2@1-O-methyl-C2498 methyltransferase RlmM RNA methylation
fig|6666666.229917.peg.618 CDS AJMH02000014.1 31107 31559 3 + 453 Ribonucleotide reductase transcriptional regulator NrdR Ribonucleotide reduction
fig|6666666.229917.peg.619 CDS AJMH02000014.1 31559 32683 2 + 1125 Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster;
Riboflavin synthesis cluster
fig|6666666.229917.peg.620 CDS AJMH02000014.1 32692 33720 1 + 1029 Outer membrane stress sensor protease DegS Periplasmic Stress Response;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229917.peg.621 CDS AJMH02000014.1 33729 34325 3 + 597 Nucleotidase YfbR, HD superfamily Housecleaning nucleoside triphosphate pyrophosphatases
fig|6666666.229917.peg.622 CDS AJMH02000014.1 35789 34392 -2 - 1398 Arsenic efflux pump protein Arsenic resistance
fig|6666666.229917.peg.623 CDS AJMH02000014.1 36735 35956 -3 - 780 DNA-binding domain of ModE / Molybdate-binding domain of ModE Molybdenum cofactor biosynthesis;
Molybdenum cofactor biosynthesis
fig|6666666.229917.peg.624 CDS AJMH02000014.1 36962 37726 2 + 765 Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229917.peg.625 CDS AJMH02000014.1 37805 38533 2 + 729 Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229917.peg.626 CDS AJMH02000014.1 38520 39581 3 + 1062 Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229917.peg.627 CDS AJMH02000014.1 41216 39726 -2 - 1491 Cytosol aminopeptidase PepA (EC 3.4.11.1) Aminopeptidases (EC 3.4.11.-);
CBSS-208964.1.peg.3826;
Dehydrogenase complexes
fig|6666666.229917.peg.628 CDS AJMH02000014.1 41353 42471 1 + 1119 FIG000988: Predicted permease CBSS-208964.1.peg.3826
fig|6666666.229917.peg.629 CDS AJMH02000014.1 42476 43543 2 + 1068 FIG000906: Predicted Permease CBSS-208964.1.peg.3826
fig|6666666.229917.peg.630 CDS AJMH02000014.1 43718 44602 2 + 885 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) 5-FCL-like protein;
Methionine Biosynthesis;
One-carbon metabolism by tetrahydropterines;
Serine-glyoxylate cycle
fig|6666666.229917.peg.631 CDS AJMH02000014.1 44752 45567 1 + 816 Shikimate 5-dehydrogenase I gamma (EC 1.1.1.25) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229917.peg.632 CDS AJMH02000014.1 46369 46506 1 + 138 hypothetical protein - none -
fig|6666666.229917.peg.633 CDS AJMH02000014.1 47511 47359 -3 - 153 hypothetical protein - none -
fig|6666666.229917.peg.634 CDS AJMH02000014.1 48546 47533 -3 - 1014 [NiFe] hydrogenase metallocenter assembly protein HypE G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229917.peg.635 CDS AJMH02000014.1 49658 48546 -2 - 1113 [NiFe] hydrogenase metallocenter assembly protein HypD G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229917.peg.636 CDS AJMH02000014.1 50494 49685 -1 - 810 [NiFe] hydrogenase nickel incorporation-associated protein HypB G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229917.peg.637 CDS AJMH02000014.1 50794 50573 -1 - 222 ATPase component NikO of energizing module of nickel ECF transporter ECF class transporters;
Transport of Nickel and Cobalt
fig|6666666.229917.peg.638 CDS AJMH02000015.1 642 85 -3 - 558 D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase (EC 3.1.1.-) Capsular heptose biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.229917.peg.639 CDS AJMH02000015.1 839 1876 2 + 1038 Methionine ABC transporter ATP-binding protein Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229917.peg.640 CDS AJMH02000015.1 1866 2543 3 + 678 Methionine ABC transporter permease protein Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229917.peg.641 CDS AJMH02000015.1 2578 3420 1 + 843 Methionine ABC transporter substrate-binding protein Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229917.peg.642 CDS AJMH02000015.1 3526 4023 1 + 498 Phospholipid-binding protein - none -
fig|6666666.229917.peg.643 CDS AJMH02000015.1 4142 4618 2 + 477 tRNA (cytidine(34)-2@1-O)-methyltransferase (EC 2.1.1.207) Biotin synthesis cluster;
RNA methylation
fig|6666666.229917.peg.644 CDS AJMH02000015.1 5589 4714 -3 - 876 Membrane protein LAPB - none -
fig|6666666.229917.peg.645 CDS AJMH02000015.1 5712 5599 -3 - 114 hypothetical protein - none -
fig|6666666.229917.peg.646 CDS AJMH02000015.1 5722 6336 1 + 615 GTP-binding protein EngB - none -
fig|6666666.229917.peg.647 CDS AJMH02000015.1 6451 6603 1 + 153 MG(2+) CHELATASE FAMILY PROTEIN / ComM-related protein CBSS-203122.12.peg.188;
CBSS-203122.12.peg.188
fig|6666666.229917.peg.648 CDS AJMH02000015.1 6698 7318 2 + 621 MG(2+) CHELATASE FAMILY PROTEIN CBSS-203122.12.peg.188
fig|6666666.229917.peg.649 CDS AJMH02000015.1 7420 9168 1 + 1749 hypothetical protein - none -
fig|6666666.229917.peg.650 CDS AJMH02000015.1 9756 11003 3 + 1248 Ribokinase (EC 2.7.1.15) D-ribose utilization;
Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.229917.peg.651 CDS AJMH02000015.1 13067 12240 -2 - 828 Thermostable 8-oxoguanine DNA glycosylase - none -
fig|6666666.229917.peg.652 CDS AJMH02000015.1 13742 13083 -2 - 660 Methyltransferase - none -
fig|6666666.229917.peg.653 CDS AJMH02000015.1 14014 19989 1 + 5976 VgrG protein - none -
fig|6666666.229917.peg.654 CDS AJMH02000015.1 19993 20508 1 + 516 hypothetical protein - none -
fig|6666666.229917.peg.655 CDS AJMH02000015.1 22142 21330 -2 - 813 Bll0873 protein - none -
fig|6666666.229917.peg.656 CDS AJMH02000015.1 23025 22177 -3 - 849 Chromosome (plasmid) partitioning protein ParB Bacterial Cytoskeleton;
Cell Division Subsystem including YidCD;
RNA modification and chromosome partitioning cluster
fig|6666666.229917.peg.657 CDS AJMH02000015.1 24546 23485 -3 - 1062 Recombinase - none -
fig|6666666.229917.peg.658 CDS AJMH02000015.1 26789 25374 -2 - 1416 FIGfam110555 CBSS-203122.12.peg.188
fig|6666666.229917.peg.659 CDS AJMH02000015.1 27904 26786 -1 - 1119 Mll9366 protein CBSS-203122.12.peg.188
fig|6666666.229917.peg.660 CDS AJMH02000015.1 28755 27862 -3 - 894 TniB NTP-binding protein CBSS-203122.12.peg.188
fig|6666666.229917.peg.661 CDS AJMH02000015.1 30674 28755 -2 - 1920 TniA putative transposase CBSS-203122.12.peg.188
fig|6666666.229917.peg.662 CDS AJMH02000015.1 31329 30667 -3 - 663 FIGfam050825 CBSS-203122.12.peg.188
fig|6666666.229917.peg.663 CDS AJMH02000015.1 31465 32169 1 + 705 MG(2+) CHELATASE FAMILY PROTEIN / ComM-related protein CBSS-203122.12.peg.188;
CBSS-203122.12.peg.188
fig|6666666.229917.peg.664 CDS AJMH02000015.1 33008 32181 -2 - 828 Putative periplasmic protein YibQ, distant homology with nucleoside diphosphatase and polysaccharide deacetylase CBSS-224911.1.peg.435;
Phosphoglycerate mutase protein family
fig|6666666.229917.peg.665 CDS AJMH02000015.1 34222 33005 -1 - 1218 Periplasmic septal ring factor with murein hydrolase activity EnvC/YibP CBSS-224911.1.peg.435;
Glutaredoxins;
Phosphoglycerate mutase protein family
fig|6666666.229917.peg.666 CDS AJMH02000015.1 36131 34473 -2 - 1659 Phosphoglucosamine mutase (EC 5.4.2.10) Sialic Acid Metabolism;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229917.peg.667 CDS AJMH02000015.1 36437 37120 2 + 684 Phosphoglycerate mutase (EC 5.4.2.1) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis;
Phosphoglycerate mutase protein family
fig|6666666.229917.peg.668 CDS AJMH02000015.1 37699 37205 -1 - 495 Protein yfbU - none -
fig|6666666.229917.peg.669 CDS AJMH02000015.1 38493 37717 -3 - 777 Nucleoside ABC transporter, periplasmic nucleoside-binding protein - none -
fig|6666666.229917.peg.670 CDS AJMH02000015.1 40142 38559 -2 - 1584 Nickel ABC transporter, periplasmic nickel-binding protein NikA (TC 3.A.1.5.3) Transport of Nickel and Cobalt
fig|6666666.229917.peg.671 CDS AJMH02000015.1 41539 40208 -1 - 1332 ATP-dependent hsl protease ATP-binding subunit HslU Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229917.peg.672 CDS AJMH02000015.1 42087 41560 -3 - 528 ATP-dependent protease HslV (EC 3.4.25.-) Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229917.peg.673 CDS AJMH02000015.1 42302 43009 2 + 708 NMN phosphatase (EC 3.1.3.5); Class B acid phosphatase precursor (EC 3.1.3.2) NAD and NADP cofactor biosynthesis global
fig|6666666.229917.peg.674 CDS AJMH02000015.1 43708 43391 -1 - 318 hypothetical protein - none -
fig|6666666.229917.peg.675 CDS AJMH02000015.1 45231 43987 -3 - 1245 Tryptophan-specific transport protein - none -
fig|6666666.229917.peg.676 CDS AJMH02000015.1 45393 45920 3 + 528 Inorganic pyrophosphatase (EC 3.6.1.1) Phosphate metabolism
fig|6666666.229917.peg.677 CDS AJMH02000015.1 45996 46769 3 + 774 Zn-dependent protease with chaperone function - none -
fig|6666666.229917.peg.678 CDS AJMH02000015.1 47449 48093 1 + 645 3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster;
riboflavin to FAD
fig|6666666.229917.peg.679 CDS AJMH02000015.1 49184 48180 -2 - 1005 Tryptophanyl-tRNA synthetase (EC 6.1.1.2) tRNA aminoacylation, Trp
fig|6666666.229917.peg.680 CDS AJMH02000015.1 50720 49359 -2 - 1362 Signal recognition particle receptor protein FtsY (=alpha subunit) (TC 3.A.5.1.1) Bacterial Cell Division;
Bacterial signal recognition particle (SRP)
fig|6666666.229917.peg.681 CDS AJMH02000015.1 50808 51392 3 + 585 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) CBSS-266117.6.peg.1260;
CBSS-269801.1.peg.1715;
RNA methylation
fig|6666666.229917.peg.682 CDS AJMH02000015.1 51679 52644 1 + 966 PTS system, mannose-specific IIA component (EC 2.7.1.69) / PTS system, mannose-specific IIB component (EC 2.7.1.69) Mannose Metabolism;
Mannose Metabolism;
Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229917.peg.683 CDS AJMH02000015.1 52662 53459 3 + 798 PTS system, mannose-specific IIC component - none -
fig|6666666.229917.peg.684 CDS AJMH02000015.1 53473 54309 1 + 837 PTS system, mannose-specific IID component (EC 2.7.1.69) Mannose Metabolism;
Sialic Acid Metabolism
fig|6666666.229917.peg.685 CDS AJMH02000015.1 55856 57106 2 + 1251 Nucleoside permease NupC - none -
fig|6666666.229917.peg.686 CDS AJMH02000015.1 57232 57951 1 + 720 Purine nucleoside phosphorylase (EC 2.4.2.1) Adenosyl nucleosidases;
Deoxyribose and Deoxynucleoside Catabolism;
Purine conversions;
pyrimidine conversions
fig|6666666.229917.peg.687 CDS AJMH02000015.1 57969 58112 3 + 144 hypothetical protein - none -
fig|6666666.229917.peg.688 CDS AJMH02000015.1 58254 60641 3 + 2388 Biofilm PGA outer membrane secretin PgaA Biofilm Adhesin Biosynthesis
fig|6666666.229917.peg.689 CDS AJMH02000015.1 60657 62573 3 + 1917 Biofilm PGA synthesis deacetylase PgaB (EC 3.-) Biofilm Adhesin Biosynthesis
fig|6666666.229917.peg.690 CDS AJMH02000015.1 62582 63817 2 + 1236 Biofilm PGA synthesis N-glycosyltransferase PgaC (EC 2.4.-.-) Biofilm Adhesin Biosynthesis
fig|6666666.229917.peg.691 CDS AJMH02000015.1 63820 64113 1 + 294 AagD - none -
fig|6666666.229917.peg.692 CDS AJMH02000015.1 64216 64076 -1 - 141 hypothetical protein - none -
fig|6666666.229917.peg.693 CDS AJMH02000015.1 65556 64231 -3 - 1326 Hexose phosphate uptake regulatory protein UhpC - none -
fig|6666666.229917.peg.694 CDS AJMH02000015.1 65727 66359 3 + 633 Pyridoxamine 5@1-phosphate oxidase (EC 1.4.3.5) Pyridoxin (Vitamin B6) Biosynthesis
fig|6666666.229917.peg.695 CDS AJMH02000015.1 67091 66447 -2 - 645 hypothetical protein - none -
fig|6666666.229917.peg.696 CDS AJMH02000015.1 69004 67604 -1 - 1401 USG protein - none -
fig|6666666.229917.peg.697 CDS AJMH02000015.1 70364 69063 -2 - 1302 Predicted ATPase (AAA+ superfamily) - none -
fig|6666666.229917.peg.698 CDS AJMH02000015.1 72166 70835 -1 - 1332 ATP-dependent RNA helicase SrmB - none -
fig|6666666.229917.peg.699 CDS AJMH02000015.1 72153 72281 3 + 129 hypothetical protein - none -
fig|6666666.229917.peg.700 CDS AJMH02000015.1 72265 72963 1 + 699 tRNA (adenine37-N(6))-methyltransferase TrmN6 (EC 2.1.1.223) RNA methylation
fig|6666666.229917.peg.701 CDS AJMH02000015.1 73727 73038 -2 - 690 Ribosyl nicotinamide transporter, PnuC-like NAD and NADP cofactor biosynthesis global
fig|6666666.229917.peg.702 CDS AJMH02000015.1 74108 74767 2 + 660 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses;
Ribosome biogenesis bacterial;
tRNA modification Bacteria
fig|6666666.229917.peg.703 CDS AJMH02000015.1 74916 74764 -3 - 153 hypothetical protein - none -
fig|6666666.229917.peg.704 CDS AJMH02000015.1 75592 75086 -1 - 507 S-ribosylhomocysteine lyase (EC 4.4.1.21) / Autoinducer-2 production protein LuxS Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon);
Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229917.peg.705 CDS AJMH02000015.1 76291 75806 -1 - 486 Putative membrane protein - none -
fig|6666666.229917.peg.706 CDS AJMH02000015.1 76899 76294 -3 - 606 Galactoside O-acetyltransferase (EC 2.3.1.18) Lactose utilization
fig|6666666.229917.peg.707 CDS AJMH02000015.1 77501 76899 -2 - 603 Putative phosphatase YqaB 2-phosphoglycolate salvage
fig|6666666.229917.peg.708 CDS AJMH02000015.1 77630 78010 2 + 381 FIG00782409: hypothetical protein - none -
fig|6666666.229917.peg.709 CDS AJMH02000015.1 80541 78526 -3 - 2016 ATP-dependent DNA helicase Rep DNA repair, bacterial UvrD and related helicases
fig|6666666.229917.peg.710 CDS AJMH02000015.1 80781 80551 -3 - 231 FIG00696102: hypothetical protein - none -
fig|6666666.229917.peg.711 CDS AJMH02000015.1 81448 80885 -1 - 564 Outer membrane protein 18/16 - none -
fig|6666666.229917.peg.712 CDS AJMH02000015.1 81665 84466 2 + 2802 DNA polymerase I (EC 2.7.7.7) DNA Repair Base Excision
fig|6666666.229917.peg.713 CDS AJMH02000015.1 84481 84603 1 + 123 hypothetical protein - none -
fig|6666666.229917.peg.714 CDS AJMH02000015.1 84853 85200 1 + 348 hypothetical protein - none -
fig|6666666.229917.peg.715 CDS AJMH02000015.1 87120 85306 -3 - 1815 5@1-nucleotidase (EC 3.1.3.5); NAD pyrophosphatase, periplasmic (EC 3.6.1.22) Purine conversions;
pyrimidine conversions
fig|6666666.229917.peg.716 CDS AJMH02000015.1 87923 87147 -2 - 777 Protein HI0205 precursor - none -
fig|6666666.229917.peg.717 CDS AJMH02000015.1 88180 88061 -1 - 120 hypothetical protein - none -
fig|6666666.229917.peg.718 CDS AJMH02000015.1 88202 89128 2 + 927 ADP-L-glycero-D-manno-heptose-6-epimerase (EC 5.1.3.20) LOS core oligosaccharide biosynthesis
fig|6666666.229917.peg.719 CDS AJMH02000015.1 89298 90425 3 + 1128 Fic family protein - none -
fig|6666666.229917.peg.720 CDS AJMH02000015.1 90445 91488 1 + 1044 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) LOS core oligosaccharide biosynthesis
fig|6666666.229917.peg.721 CDS AJMH02000015.1 91606 93501 1 + 1896 Glutathionylspermidine synthase (EC 6.3.1.8) / Glutathionylspermidine amidohydrolase (EC 3.5.1.78) Glutathionylspermidine and Trypanothione;
Glutathionylspermidine and Trypanothione
fig|6666666.229917.peg.722 CDS AJMH02000015.1 94222 93587 -1 - 636 Cytochrome c-type protein NapC - none -
fig|6666666.229917.peg.723 CDS AJMH02000015.1 94685 94236 -2 - 450 Nitrate reductase cytochrome c550-type subunit - none -
fig|6666666.229917.peg.724 CDS AJMH02000015.1 95604 94723 -3 - 882 Polyferredoxin NapH (periplasmic nitrate reductase) - none -
fig|6666666.229917.peg.725 CDS AJMH02000015.1 96443 95604 -2 - 840 Ferredoxin-type protein NapG (periplasmic nitrate reductase) - none -
fig|6666666.229917.peg.726 CDS AJMH02000015.1 98977 96491 -1 - 2487 Periplasmic nitrate reductase precursor (EC 1.7.99.4) - none -
fig|6666666.229917.peg.727 CDS AJMH02000015.1 99295 99011 -1 - 285 Periplasmic nitrate reductase component NapD - none -
fig|6666666.229917.peg.728 CDS AJMH02000015.1 99525 99361 -3 - 165 hypothetical protein - none -
fig|6666666.229917.peg.729 CDS AJMH02000015.1 99571 101274 1 + 1704 Nitrate/nitrite sensor protein (EC 2.7.3.-) - none -
fig|6666666.229917.peg.730 CDS AJMH02000015.1 101289 102314 3 + 1026 UDP-N-acetylenolpyruvoylglucosamine reductase (EC 1.1.1.158) Peptidoglycan Biosynthesis;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229917.peg.731 CDS AJMH02000015.1 102330 102644 3 + 315 Uncharacterized protein conserved in bacteria - none -
fig|6666666.229917.peg.732 CDS AJMH02000015.1 102829 103677 1 + 849 RNA polymerase sigma factor RpoH Heat shock dnaK gene cluster extended;
Transcription initiation, bacterial sigma factors
fig|6666666.229917.peg.733 CDS AJMH02000015.1 104271 103744 -3 - 528 DNA transformation protein TfoX CBSS-83333.1.peg.946;
Orphan regulatory proteins
fig|6666666.229917.peg.734 CDS AJMH02000016.1 821 237 -2 - 585 Phosphoheptose isomerase 1 (EC 5.3.1.-) Capsular heptose biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.229917.peg.735 CDS AJMH02000016.1 4444 923 -1 - 3522 Transcription-repair coupling factor Cell division-ribosomal stress proteins cluster;
Transcription factors bacterial;
Transcription repair cluster
fig|6666666.229917.peg.736 CDS AJMH02000016.1 5009 4836 -2 - 174 hypothetical protein - none -
fig|6666666.229917.peg.737 CDS AJMH02000016.1 6972 5047 -3 - 1926 Predicted P-loop ATPase fused to an acetyltransferase COG1444 tRNA modification Archaea;
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229917.peg.738 CDS AJMH02000016.1 7677 6976 -3 - 702 unknown - none -
fig|6666666.229917.peg.739 CDS AJMH02000016.1 8311 7847 -1 - 465 Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly CBSS-56780.10.peg.1536;
Glycyl-tRNA synthetase containing cluster;
tRNA-methylthiotransferase containing cluster
fig|6666666.229917.peg.740 CDS AJMH02000016.1 9061 9288 1 + 228 Flp pilus assembly protein, pilin Flp Widespread colonization island
fig|6666666.229917.peg.741 CDS AJMH02000016.1 9858 10034 3 + 177 Type IV prepilin peptidase TadV/CpaA Widespread colonization island
fig|6666666.229917.peg.742 CDS AJMH02000016.1 10086 10910 3 + 825 Flp pilus assembly protein RcpC/CpaB Widespread colonization island
fig|6666666.229917.peg.743 CDS AJMH02000016.1 10912 12294 1 + 1383 Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly Widespread colonization island
fig|6666666.229917.peg.744 CDS AJMH02000016.1 12810 13934 3 + 1125 Type II/IV secretion system ATPase TadZ/CpaE, associated with Flp pilus assembly Widespread colonization island
fig|6666666.229917.peg.745 CDS AJMH02000016.1 13948 15228 1 + 1281 Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily Widespread colonization island
fig|6666666.229917.peg.746 CDS AJMH02000016.1 15228 16115 3 + 888 Flp pilus assembly protein TadB Widespread colonization island
fig|6666666.229917.peg.747 CDS AJMH02000016.1 16112 16978 2 + 867 Type II/IV secretion system protein TadC, associated with Flp pilus assembly Widespread colonization island
fig|6666666.229917.peg.748 CDS AJMH02000016.1 16968 17729 3 + 762 Flp pilus assembly protein TadD, contains TPR repeat Widespread colonization island
fig|6666666.229917.peg.749 CDS AJMH02000016.1 18650 18967 2 + 318 Flp pilus assembly surface protein TadF, ATP/GTP-binding motif Widespread colonization island
fig|6666666.229917.peg.750 CDS AJMH02000016.1 18983 20623 2 + 1641 Protein TadG, associated with Flp pilus assembly Widespread colonization island
fig|6666666.229917.peg.751 CDS AJMH02000016.1 21835 21599 -1 - 237 Mobile element protein - none -
fig|6666666.229917.peg.752 CDS AJMH02000016.1 21995 21879 -2 - 117 hypothetical protein - none -
fig|6666666.229917.peg.753 CDS AJMH02000016.1 24321 22819 -3 - 1503 Sodium-dependent transporter - none -
fig|6666666.229917.peg.754 CDS AJMH02000016.1 24737 25012 2 + 276 tRNA pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses;
tRNA modification Archaea;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229917.peg.755 CDS AJMH02000016.1 25153 25464 1 + 312 Membrane protein, MgtC/SapB family - none -
fig|6666666.229917.peg.756 CDS AJMH02000016.1 26405 25503 -2 - 903 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit - none -
fig|6666666.229917.peg.757 CDS AJMH02000016.1 28310 26451 -2 - 1860 Selenocysteine-specific translation elongation factor Selenocysteine metabolism
fig|6666666.229917.peg.758 CDS AJMH02000016.1 29701 28307 -1 - 1395 L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1) Selenocysteine metabolism
fig|6666666.229917.peg.759 CDS AJMH02000016.1 29845 31560 1 + 1716 Prolyl-tRNA synthetase (EC 6.1.1.15), bacterial type tRNA aminoacylation, Pro
fig|6666666.229917.peg.760 CDS AJMH02000016.1 31645 31833 1 + 189 Ethidium bromide-methyl viologen resistance protein EmrE - none -
fig|6666666.229917.peg.761 CDS AJMH02000016.1 31873 32127 1 + 255 YgfY COG2938 - none -
fig|6666666.229917.peg.762 CDS AJMH02000016.1 32260 32835 1 + 576 RNA polymerase sigma factor RpoE Transcription initiation, bacterial sigma factors
fig|6666666.229917.peg.763 CDS AJMH02000016.1 32874 33458 3 + 585 Sigma factor RpoE negative regulatory protein RseA Periplasmic Stress Response;
Transcription initiation, bacterial sigma factors
fig|6666666.229917.peg.764 CDS AJMH02000016.1 33541 34503 1 + 963 Sigma factor RpoE negative regulatory protein RseB precursor Periplasmic Stress Response;
Transcription initiation, bacterial sigma factors
fig|6666666.229917.peg.765 CDS AJMH02000016.1 34513 34950 1 + 438 Sigma factor RpoE regulatory protein RseC Transcription initiation, bacterial sigma factors
fig|6666666.229917.peg.766 CDS AJMH02000016.1 35031 35543 3 + 513 Molybdopterin-guanine dinucleotide biosynthesis protein MobB Molybdenum cofactor biosynthesis;
ar-431-EC Molybdopterin-guanine dinucleotide biosynthesis
fig|6666666.229917.peg.767 CDS AJMH02000016.1 35637 36392 3 + 756 Short chain dehydrogenase - none -
fig|6666666.229917.peg.768 CDS AJMH02000016.1 37932 36472 -3 - 1461 Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3) Dipeptidases (EC 3.4.13.-);
Recycling of Peptidoglycan Amino Acids
fig|6666666.229917.peg.769 CDS AJMH02000016.1 38047 38511 1 + 465 Xanthine-guanine phosphoribosyltransferase (EC 2.4.2.22) Purine conversions
fig|6666666.229917.peg.770 CDS AJMH02000016.1 40944 38602 -3 - 2343 Outer membrane protein Imp, required for envelope biogenesis / Organic solvent tolerance protein precursor Lipopolysaccharide assembly
fig|6666666.229917.peg.771 CDS AJMH02000016.1 41570 41010 -2 - 561 DNA-3-methyladenine glycosylase (EC 3.2.2.20) CBSS-326442.4.peg.1852;
DNA Repair Base Excision
fig|6666666.229917.peg.772 CDS AJMH02000016.1 41769 42374 3 + 606 probable integral membrane protein Cj0014c - none -
fig|6666666.229917.peg.773 CDS AJMH02000016.1 43677 42427 -3 - 1251 Diaminopimelate decarboxylase (EC 4.1.1.20) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229917.peg.774 CDS AJMH02000016.1 43814 43695 -2 - 120 hypothetical protein - none -
fig|6666666.229917.peg.775 CDS AJMH02000016.1 43937 44251 2 + 315 Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly Biogenesis of cytochrome c oxidases
fig|6666666.229917.peg.776 CDS AJMH02000016.1 44248 46137 1 + 1890 ATP-dependent DNA helicase RecQ DNA repair, bacterial RecFOR pathway
fig|6666666.229917.peg.777 CDS AJMH02000016.1 46234 48654 1 + 2421 DNA gyrase subunit B (EC 5.99.1.3) Cell Division Subsystem including YidCD;
DNA gyrase subunits;
DNA replication cluster 1;
DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.229917.peg.778 CDS AJMH02000016.1 49623 48709 -3 - 915 Pantothenate kinase (EC 2.7.1.33) Coenzyme A Biosynthesis
fig|6666666.229917.peg.779 CDS AJMH02000017.1 93 1073 3 + 981 Autoinducer 2 (AI-2) ABC transport system, fused AI2 transporter subunits and ATP-binding component Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229917.peg.780 CDS AJMH02000017.1 1110 1394 3 + 285 Autoinducer 2 (AI-2) ABC transport system, fused AI2 transporter subunits and ATP-binding component Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229917.peg.781 CDS AJMH02000017.1 1404 2435 3 + 1032 Autoinducer 2 (AI-2) ABC transport system, membrane channel protein LsrC Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229917.peg.782 CDS AJMH02000017.1 2449 3369 1 + 921 Autoinducer 2 (AI-2) ABC transport system, membrane channel protein LsrD Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229917.peg.783 CDS AJMH02000017.1 3478 4575 1 + 1098 Autoinducer 2 (AI-2) ABC transport system, periplasmic AI-2 binding protein LsrB Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229917.peg.784 CDS AJMH02000017.1 4599 5477 3 + 879 Autoinducer 2 (AI-2) aldolase LsrF (EC 4.2.1.-) Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229917.peg.785 CDS AJMH02000017.1 5510 5812 2 + 303 Autoinducer 2 (AI-2) modifying protein LsrG Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229917.peg.786 CDS AJMH02000017.1 7322 5916 -2 - 1407 Pyruvate kinase (EC 2.7.1.40) Entner-Doudoroff Pathway;
Glycerate metabolism;
Glycolysis and Gluconeogenesis;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229917.peg.787 CDS AJMH02000017.1 8597 7608 -2 - 990 Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) Ribonucleotide reduction
fig|6666666.229917.peg.788 CDS AJMH02000017.1 10415 8730 -2 - 1686 Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) Ribonucleotide reduction
fig|6666666.229917.peg.789 CDS AJMH02000017.1 11496 10690 -3 - 807 Tryptophan synthase alpha chain (EC 4.2.1.20) Auxin biosynthesis;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229917.peg.790 CDS AJMH02000017.1 12692 11499 -2 - 1194 Tryptophan synthase beta chain (EC 4.2.1.20) Auxin biosynthesis;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229917.peg.791 CDS AJMH02000017.1 13469 12702 -2 - 768 3-hydroxypropionate dehydrogenase (EC 1.1.1.298) - none -
fig|6666666.229917.peg.792 CDS AJMH02000017.1 13502 13633 2 + 132 hypothetical protein - none -
fig|6666666.229917.peg.793 CDS AJMH02000017.1 14133 16577 3 + 2445 Outer membrane receptor for lactoferrin or transferrin, TonB-dependent protein A - none -
fig|6666666.229917.peg.794 CDS AJMH02000017.1 18285 16981 -3 - 1305 Oxaloacetate decarboxylase beta chain (EC 4.1.1.3) Na+ translocating decarboxylases and related biotin-dependent enzymes;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229917.peg.795 CDS AJMH02000017.1 20092 18296 -1 - 1797 Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3) Na+ translocating decarboxylases and related biotin-dependent enzymes;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229917.peg.796 CDS AJMH02000017.1 20374 20108 -1 - 267 Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3) Na+ translocating decarboxylases and related biotin-dependent enzymes;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229917.peg.797 CDS AJMH02000017.1 21674 21399 -2 - 276 [NiFe] hydrogenase metallocenter assembly protein HybG G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229917.peg.798 CDS AJMH02000017.1 21990 21823 -3 - 168 hypothetical protein - none -
fig|6666666.229917.peg.799 CDS AJMH02000017.1 23559 22129 -3 - 1431 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24) Auxin biosynthesis;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis;
Tryptophan synthesis
fig|6666666.229917.peg.800 CDS AJMH02000017.1 23846 23568 -2 - 279 HigA protein (antitoxin to HigB) Toxin-antitoxin replicon stabilization systems
fig|6666666.229917.peg.801 CDS AJMH02000017.1 24134 23856 -2 - 279 HigB toxin protein Toxin-antitoxin replicon stabilization systems
fig|6666666.229917.peg.802 CDS AJMH02000017.1 25230 24229 -3 - 1002 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) Auxin biosynthesis;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229917.peg.803 CDS AJMH02000017.1 25634 25242 -2 - 393 putative - none -
fig|6666666.229917.peg.804 CDS AJMH02000017.1 26298 25708 -3 - 591 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229917.peg.805 CDS AJMH02000017.1 27856 26309 -1 - 1548 Anthranilate synthase, aminase component (EC 4.1.3.27) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229917.peg.806 CDS AJMH02000017.1 28578 28024 -3 - 555 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC 3.1.3.45) KDO2-Lipid A biosynthesis
fig|6666666.229917.peg.807 CDS AJMH02000017.1 29513 28578 -2 - 936 Arabinose 5-phosphate isomerase (EC 5.3.1.13) KDO2-Lipid A biosynthesis
fig|6666666.229917.peg.808 CDS AJMH02000017.1 30196 31071 1 + 876 Probable protease htpX homolog - none -
fig|6666666.229917.peg.809 CDS AJMH02000017.1 31411 32400 1 + 990 Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20) tRNA aminoacylation, Phe
fig|6666666.229917.peg.810 CDS AJMH02000017.1 32420 34810 2 + 2391 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) tRNA aminoacylation, Phe
fig|6666666.229917.peg.811 CDS AJMH02000017.1 34814 35110 2 + 297 Integration host factor alpha subunit DNA structural proteins, bacterial
fig|6666666.229917.peg.812 CDS AJMH02000017.1 35162 35650 2 + 489 Probable lipoprotein nlpC precursor - none -
fig|6666666.229917.peg.813 CDS AJMH02000017.1 36710 35745 -2 - 966 tRNA(Cytosine32)-2-thiocytidine synthetase CBSS-326442.4.peg.1852;
tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229917.peg.814 CDS AJMH02000017.1 36851 37267 2 + 417 putative membrane protein - none -
fig|6666666.229917.peg.815 CDS AJMH02000017.1 39105 37357 -3 - 1749 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins Ton and Tol transport systems
fig|6666666.229917.peg.816 CDS AJMH02000017.1 39097 39381 1 + 285 ABC transporter, solute-binding protein - none -
fig|6666666.229917.peg.817 CDS AJMH02000017.1 39381 40394 3 + 1014 Vitamin B12 ABC transporter, permease component BtuC - none -
fig|6666666.229917.peg.818 CDS AJMH02000017.1 40391 41140 2 + 750 ABC transporter ATP-binding protein - none -
fig|6666666.229917.peg.819 CDS AJMH02000017.1 41235 42095 3 + 861 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins Ton and Tol transport systems
fig|6666666.229917.peg.820 CDS AJMH02000017.1 42123 43631 3 + 1509 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins Ton and Tol transport systems
fig|6666666.229917.peg.821 CDS AJMH02000017.1 43959 43750 -3 - 210 Molybdate-binding domain of ModE Molybdenum cofactor biosynthesis
fig|6666666.229917.peg.822 CDS AJMH02000017.1 45075 44041 -3 - 1035 FIG00362752: hypothetical protein - none -
fig|6666666.229917.peg.823 CDS AJMH02000017.1 45882 45088 -3 - 795 Glutathione synthetase (EC 6.3.2.3) Cluster containing Glutathione synthetase;
Glutathione: Biosynthesis and gamma-glutamyl cycle;
Heat shock dnaK gene cluster extended
fig|6666666.229917.peg.824 CDS AJMH02000017.1 46901 45882 -2 - 1020 Vitamin B12 ABC transporter, permease component BtuC - none -
fig|6666666.229917.peg.825 CDS AJMH02000017.1 47051 46920 -2 - 132 hypothetical protein - none -
fig|6666666.229917.peg.826 CDS AJMH02000017.1 48447 47029 -3 - 1419 Outer membrane component of tripartite multidrug resistance system Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria
fig|6666666.229917.peg.827 CDS AJMH02000017.1 49594 48467 -1 - 1128 ABC-type multidrug transport system, permease component - none -
fig|6666666.229917.peg.828 CDS AJMH02000017.1 52340 49596 -2 - 2745 ABC-type multidrug transport system, permease component - none -
fig|6666666.229917.peg.829 CDS AJMH02000017.1 53323 52343 -1 - 981 HlyD family secretion protein - none -
fig|6666666.229917.peg.830 CDS AJMH02000017.1 53471 54034 2 + 564 Transcriptional regulator, TetR family - none -
fig|6666666.229917.peg.831 CDS AJMH02000017.1 55275 54085 -3 - 1191 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229917.peg.832 CDS AJMH02000017.1 55697 58306 2 + 2610 Membrane alanine aminopeptidase N (EC 3.4.11.2) Aminopeptidases (EC 3.4.11.-)
fig|6666666.229917.peg.833 CDS AJMH02000017.1 58379 59398 2 + 1020 Dihydroorotate dehydrogenase (EC 1.3.3.1) De Novo Pyrimidine Synthesis
fig|6666666.229917.peg.834 CDS AJMH02000017.1 59412 60248 3 + 837 COG0613, Predicted metal-dependent phosphoesterases (PHP family) YrdC-YciO-Sua5 protein family;
tRNA modification Bacteria
fig|6666666.229917.peg.835 CDS AJMH02000017.1 60486 63092 3 + 2607 DNA topoisomerase I (EC 5.99.1.2) CBSS-272943.3.peg.1367;
Conserved gene cluster associated with Met-tRNA formyltransferase;
DNA topoisomerases, Type I, ATP-independent
fig|6666666.229917.peg.836 CDS AJMH02000017.1 64013 63177 -2 - 837 ABC-type Co2+ transport system, periplasmic component - none -
fig|6666666.229917.peg.837 CDS AJMH02000017.1 65072 64140 -2 - 933 Universal stress protein E Universal stress protein family
fig|6666666.229917.peg.838 CDS AJMH02000017.1 65964 65191 -3 - 774 Fumarate and nitrate reduction regulatory protein Oxidative stress
fig|6666666.229917.peg.839 CDS AJMH02000017.1 66073 66243 1 + 171 hypothetical protein - none -
fig|6666666.229917.peg.840 CDS AJMH02000017.1 66802 66305 -1 - 498 Ferritin-like protein 2 - none -
fig|6666666.229917.peg.841 CDS AJMH02000017.1 67303 66818 -1 - 486 Ferritin-like protein 2 - none -
fig|6666666.229917.peg.842 CDS AJMH02000018.1 1176 592 -3 - 585 FIG027190: Putative transmembrane protein Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229917.peg.843 CDS AJMH02000018.1 1619 1173 -2 - 447 FIG002571: 4-hydroxybenzoyl-CoA thioesterase domain protein Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229917.peg.844 CDS AJMH02000018.1 2542 1616 -1 - 927 Lysophospholipid acyltransferase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229917.peg.845 CDS AJMH02000018.1 3261 2539 -3 - 723 FIG143263: Glycosyl transferase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229917.peg.846 CDS AJMH02000018.1 4622 3261 -2 - 1362 FIGfam138462: Acyl-CoA synthetase, AMP-(fatty) acid ligase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229917.peg.847 CDS AJMH02000018.1 5164 4619 -1 - 546 FIG017861: hypothetical protein Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229917.peg.848 CDS AJMH02000018.1 6856 5189 -1 - 1668 FIGfam138462: Acyl-CoA synthetase, AMP-(fatty) acid ligase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229917.peg.849 CDS AJMH02000018.1 7107 6856 -3 - 252 Acyl carrier protein (ACP2) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229917.peg.850 CDS AJMH02000018.1 7373 7110 -2 - 264 Acyl carrier protein (ACP1) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229917.peg.851 CDS AJMH02000018.1 8139 7351 -3 - 789 FIG018329: 1-acyl-sn-glycerol-3-phosphate acyltransferase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229917.peg.852 CDS AJMH02000018.1 8867 8124 -2 - 744 3-oxoacyl-[ACP] synthase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229917.peg.853 CDS AJMH02000018.1 9220 8897 -1 - 324 hypothetical protein - none -
fig|6666666.229917.peg.854 CDS AJMH02000018.1 9248 9673 2 + 426 Excinuclease ATPase subunit - none -
fig|6666666.229917.peg.855 CDS AJMH02000018.1 10487 9774 -2 - 714 Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5@1-phosphoribitylamino)uracil phosphatase Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants
fig|6666666.229917.peg.856 CDS AJMH02000018.1 11391 10501 -3 - 891 Tyrosine recombinase XerC - none -
fig|6666666.229917.peg.857 CDS AJMH02000018.1 12225 11401 -3 - 825 Diaminopimelate epimerase (EC 5.1.1.7) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229917.peg.858 CDS AJMH02000018.1 12483 12304 -3 - 180 hypothetical protein - none -
fig|6666666.229917.peg.859 CDS AJMH02000018.1 13511 12483 -2 - 1029 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) - none -
fig|6666666.229917.peg.860 CDS AJMH02000018.1 13694 14194 2 + 501 hypothetical protein - none -
fig|6666666.229917.peg.861 CDS AJMH02000018.1 14167 14286 1 + 120 hypothetical protein - none -
fig|6666666.229917.peg.862 CDS AJMH02000018.1 16866 14296 -3 - 2571 ClpB protein Protein chaperones;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229917.peg.863 CDS AJMH02000018.1 17131 17418 1 + 288 Late competence protein ComEA, DNA receptor - none -
fig|6666666.229917.peg.864 CDS AJMH02000018.1 17487 17711 3 + 225 Late competence protein ComEA, DNA receptor - none -
fig|6666666.229917.peg.865 CDS AJMH02000018.1 18896 17784 -2 - 1113 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch;
Threonine and Homoserine Biosynthesis
fig|6666666.229917.peg.866 CDS AJMH02000018.1 19892 19080 -2 - 813 HMP-PP hydrolase (pyridoxal phosphatase) Cof, detected in genetic screen for thiamin metabolic genes (PMID:15292217) - none -
fig|6666666.229917.peg.867 CDS AJMH02000018.1 19919 20041 2 + 123 hypothetical protein - none -
fig|6666666.229917.peg.868 CDS AJMH02000018.1 20038 20724 1 + 687 Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy Biotin biosynthesis Experimental;
Biotin synthesis cluster;
CBSS-216591.1.peg.168
fig|6666666.229917.peg.869 CDS AJMH02000018.1 20841 21425 3 + 585 NfuA Fe-S protein maturation Biotin biosynthesis Experimental;
DNA uptake cluster
fig|6666666.229917.peg.870 CDS AJMH02000018.1 21773 21612 -2 - 162 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) / Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) Riboflavin synthesis cluster
fig|6666666.229917.peg.871 CDS AJMH02000018.1 23223 21922 -3 - 1302 Branched-chain amino acid transport system carrier protein - none -
fig|6666666.229917.peg.872 CDS AJMH02000018.1 23451 25085 3 + 1635 CTP synthase (EC 6.3.4.2) CTP synthase (EC 6.3.4.2) cluster;
pyrimidine conversions
fig|6666666.229917.peg.873 CDS AJMH02000019.1 4334 66 -2 - 4269 DNA-directed RNA polymerase beta@1 subunit (EC 2.7.7.6) Mycobacterium virulence operon involved in DNA transcription;
RNA polymerase bacterial
fig|6666666.229917.peg.874 CDS AJMH02000019.1 8465 4437 -2 - 4029 DNA-directed RNA polymerase beta subunit (EC 2.7.7.6) Mycobacterium virulence operon involved in DNA transcription;
RNA polymerase bacterial
fig|6666666.229917.peg.875 CDS AJMH02000019.1 9107 8736 -2 - 372 LSU ribosomal protein L7/L12 (P1/P2) LSU ribosomal proteins cluster;
Ribosome LSU bacterial
fig|6666666.229917.peg.876 CDS AJMH02000019.1 9650 9159 -2 - 492 LSU ribosomal protein L10p (P0) LSU ribosomal proteins cluster;
Ribosome LSU bacterial
fig|6666666.229917.peg.877 CDS AJMH02000019.1 9997 9821 -1 - 177 hypothetical protein - none -
fig|6666666.229917.peg.878 CDS AJMH02000019.1 10701 10012 -3 - 690 LSU ribosomal protein L1p (L10Ae) LSU ribosomal proteins cluster;
Ribosome LSU bacterial
fig|6666666.229917.peg.879 CDS AJMH02000019.1 11134 10706 -1 - 429 LSU ribosomal protein L11p (L12e) LSU ribosomal proteins cluster;
Ribosome LSU bacterial
fig|6666666.229917.peg.880 CDS AJMH02000019.1 11841 11290 -3 - 552 Transcription antitermination protein NusG LSU ribosomal proteins cluster;
Transcription factors bacterial
fig|6666666.229917.peg.881 CDS AJMH02000019.1 12253 11843 -1 - 411 Preprotein translocase subunit SecE (TC 3.A.5.1.1) LSU ribosomal proteins cluster
fig|6666666.229917.peg.882 CDS AJMH02000019.1 13399 12695 -1 - 705 hypothetical protein - none -
fig|6666666.229917.peg.883 CDS AJMH02000019.1 13883 13545 -2 - 339 hypothetical protein - none -
fig|6666666.229917.peg.884 CDS AJMH02000019.1 14473 13922 -1 - 552 NAD(P)H oxidoreductase YRKL (EC 1.6.99.-) @ Putative NADPH-quinone reductase (modulator of drug activity B) @ Flavodoxin 2 Flavodoxin;
Flavodoxin
fig|6666666.229917.peg.885 CDS AJMH02000019.1 14488 15009 1 + 522 LysR family regulatory protein CidR Murein hydrolase regulation and cell death
fig|6666666.229917.peg.886 CDS AJMH02000019.1 15170 15039 -2 - 132 hypothetical protein - none -
fig|6666666.229917.peg.887 CDS AJMH02000019.1 15483 15205 -3 - 279 hypothetical protein - none -
fig|6666666.229917.peg.888 CDS AJMH02000019.1 17169 15505 -3 - 1665 PTS system, fructose-specific IIB component (EC 2.7.1.69) / PTS system, fructose-specific IIC component (EC 2.7.1.69) Fructose utilization;
Fructose utilization
fig|6666666.229917.peg.889 CDS AJMH02000019.1 18115 17174 -1 - 942 1-phosphofructokinase (EC 2.7.1.56) Fructose utilization
fig|6666666.229917.peg.890 CDS AJMH02000019.1 19647 18118 -3 - 1530 Fructose-specific phosphocarrier protein HPr (EC 2.7.1.69) / PTS system, fructose-specific IIA component (EC 2.7.1.69) Fructose utilization;
Fructose utilization
fig|6666666.229917.peg.891 CDS AJMH02000019.1 20289 19759 -3 - 531 ATPases involved in chromosome partitioning - none -
fig|6666666.229917.peg.892 CDS AJMH02000019.1 20972 20388 -2 - 585 Molybdopterin-guanine dinucleotide biosynthesis protein MobA Molybdenum cofactor biosynthesis;
ar-431-EC Molybdopterin-guanine dinucleotide biosynthesis
fig|6666666.229917.peg.893 CDS AJMH02000019.1 21056 21322 2 + 267 Protein yihD - none -
fig|6666666.229917.peg.894 CDS AJMH02000019.1 21341 21958 2 + 618 Periplasmic thiol:disulfide interchange protein DsbA Biogenesis of c-type cytochromes;
Periplasmic disulfide interchange
fig|6666666.229917.peg.895 CDS AJMH02000019.1 22018 22347 1 + 330 Protein yifE - none -
fig|6666666.229917.peg.896 CDS AJMH02000019.1 22417 23514 1 + 1098 tRNA (uracil(54)-C5)-methyltransferase (EC 2.1.1.35) RNA methylation;
tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229917.peg.897 CDS AJMH02000019.1 23516 24274 2 + 759 rRNA small subunit methyltransferase J - none -
fig|6666666.229917.peg.898 CDS AJMH02000019.1 24458 25504 2 + 1047 hypothetical protein - none -
fig|6666666.229917.peg.899 CDS AJMH02000019.1 25589 28189 2 + 2601 DNA mismatch repair protein MutS DNA repair, bacterial MutL-MutS system;
DNA repair system including RecA, MutS and a hypothetical protein
fig|6666666.229917.peg.900 CDS AJMH02000019.1 29213 28395 -2 - 819 HMP-PP hydrolase (pyridoxal phosphatase) Cof, detected in genetic screen for thiamin metabolic genes (PMID:15292217) - none -
fig|6666666.229917.peg.901 CDS AJMH02000019.1 30116 29409 -2 - 708 Lysophospholipase (EC 3.1.1.5) Triacylglycerol metabolism
fig|6666666.229917.peg.902 CDS AJMH02000019.1 31201 30077 -1 - 1125 Lysophospholipase (EC 3.1.1.5) Triacylglycerol metabolism
fig|6666666.229917.peg.903 CDS AJMH02000019.1 31941 31249 -3 - 693 Metal-dependent hydrolase - none -
fig|6666666.229917.peg.904 CDS AJMH02000019.1 33299 31959 -2 - 1341 FIG00782214: hypothetical protein - none -
fig|6666666.229917.peg.905 CDS AJMH02000019.1 34676 33324 -2 - 1353 Low-affinity gluconate/H+ symporter GntU D-gluconate and ketogluconates metabolism
fig|6666666.229917.peg.906 CDS AJMH02000019.1 35541 34765 -3 - 777 Hydroxypyruvate isomerase (EC 5.3.1.22) Glycerate metabolism
fig|6666666.229917.peg.907 CDS AJMH02000019.1 36176 35544 -2 - 633 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases - none -
fig|6666666.229917.peg.908 CDS AJMH02000019.1 37417 36173 -1 - 1245 Predicted pyridoxine biosynthesis protein (probably from glycolaldehide) - none -
fig|6666666.229917.peg.909 CDS AJMH02000019.1 38325 37420 -3 - 906 D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) Polyhydroxybutyrate metabolism
fig|6666666.229917.peg.910 CDS AJMH02000019.1 38518 39276 1 + 759 Transcriptional regulators of sugar metabolism - none -
fig|6666666.229917.peg.911 CDS AJMH02000019.1 39352 39690 1 + 339 Nitrogen regulatory protein P-II Ammonia assimilation
fig|6666666.229917.peg.912 CDS AJMH02000019.1 39829 40872 1 + 1044 FIG004453: protein YceG like CBSS-323097.3.peg.2594;
Cluster containing Alanyl-tRNA synthetase;
tRNA modification Bacteria
fig|6666666.229917.peg.913 CDS AJMH02000019.1 40874 41506 2 + 633 Thymidylate kinase (EC 2.7.4.9) pyrimidine conversions
fig|6666666.229917.peg.914 CDS AJMH02000019.1 41503 42486 1 + 984 DNA polymerase III delta prime subunit (EC 2.7.7.7) - none -
fig|6666666.229917.peg.915 CDS AJMH02000019.1 42490 43272 1 + 783 Putative deoxyribonuclease YcfH YcfH
fig|6666666.229917.peg.916 CDS AJMH02000019.1 43304 43828 2 + 525 FIG00696143: hypothetical protein - none -
fig|6666666.229917.peg.917 CDS AJMH02000019.1 43965 43825 -3 - 141 hypothetical protein - none -
fig|6666666.229917.peg.918 CDS AJMH02000019.1 43919 45229 2 + 1311 Magnesium and cobalt efflux protein CorC CBSS-56780.10.peg.1536;
Copper homeostasis: copper tolerance;
Glycyl-tRNA synthetase containing cluster;
Magnesium transport;
tRNA-methylthiotransferase containing cluster
fig|6666666.229917.peg.919 CDS AJMH02000019.1 45834 45349 -3 - 486 Dihydrofolate reductase (EC 1.5.1.3) 5-FCL-like protein;
Folate Biosynthesis
fig|6666666.229917.peg.920 CDS AJMH02000019.1 46338 45874 -3 - 465 FIG001826: putative inner membrane protein CBSS-316275.9.peg.382
fig|6666666.229917.peg.921 CDS AJMH02000019.1 47125 46340 -1 - 786 FIG023911: putative membrane protein CBSS-316275.9.peg.382
fig|6666666.229917.peg.922 CDS AJMH02000019.1 47276 47455 2 + 180 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA Proline Synthesis;
Proline Synthesis
fig|6666666.229917.peg.923 CDS AJMH02000019.1 47436 47648 3 + 213 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA Proline Synthesis;
Proline Synthesis
fig|6666666.229917.peg.924 CDS AJMH02000019.1 47678 48079 2 + 402 Glutamate 5-kinase (EC 2.7.2.11) Proline Synthesis
fig|6666666.229917.peg.925 CDS AJMH02000019.1 48775 48143 -1 - 633 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase
fig|6666666.229917.peg.926 CDS AJMH02000019.1 49670 48801 -2 - 870 Phosphatidylserine decarboxylase (EC 4.1.1.65) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229917.peg.927 CDS AJMH02000019.1 49893 51182 3 + 1290 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229917.peg.928 CDS AJMH02000019.1 51175 52350 1 + 1176 8-amino-7-oxononanoate synthase (EC 2.3.1.47) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229917.peg.929 CDS AJMH02000019.1 52331 52981 2 + 651 Biotin synthesis protein BioG Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229917.peg.930 CDS AJMH02000019.1 52999 53739 1 + 741 Biotin synthesis protein BioC Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229917.peg.931 CDS AJMH02000019.1 53739 54380 3 + 642 Dethiobiotin synthetase (EC 6.3.3.3) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229917.peg.932 CDS AJMH02000019.1 54452 54976 2 + 525 COG1399 protein, clustered with ribosomal protein L32p - none -
fig|6666666.229917.peg.933 CDS AJMH02000019.1 54993 55163 3 + 171 LSU ribosomal protein L32p Ribosome LSU bacterial
fig|6666666.229917.peg.934 CDS AJMH02000019.1 55190 56209 2 + 1020 Phosphate:acyl-ACP acyltransferase PlsX Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229917.peg.935 CDS AJMH02000019.1 56256 57206 3 + 951 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) Fatty Acid Biosynthesis FASII
fig|6666666.229917.peg.936 CDS AJMH02000019.1 57313 58251 1 + 939 Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39) Fatty Acid Biosynthesis FASII
fig|6666666.229917.peg.937 CDS AJMH02000019.1 58276 59004 1 + 729 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) Fatty Acid Biosynthesis FASII
fig|6666666.229917.peg.938 CDS AJMH02000019.1 59278 59508 1 + 231 Acyl carrier protein Fatty Acid Biosynthesis FASII;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229917.peg.939 CDS AJMH02000019.1 59656 59543 -1 - 114 hypothetical protein - none -
fig|6666666.229917.peg.940 CDS AJMH02000019.1 59743 60972 1 + 1230 Major facilitator superfamily (MFS) transport protein - none -
fig|6666666.229917.peg.941 CDS AJMH02000019.1 62359 61097 -1 - 1263 Transcription termination factor Rho Transcription factors bacterial
fig|6666666.229917.peg.942 CDS AJMH02000019.1 62660 63916 2 + 1257 ATP-dependent RNA helicase RhlB - none -
fig|6666666.229917.peg.943 CDS AJMH02000019.1 63983 64291 2 + 309 Iojap protein - none -
fig|6666666.229917.peg.944 CDS AJMH02000019.1 64282 64818 1 + 537 LSU m3Psi1915 methyltransferase RlmH RNA methylation;
Ribosome biogenesis bacterial;
tRNA modification Bacteria
fig|6666666.229917.peg.945 CDS AJMH02000019.1 64831 66792 1 + 1962 Penicillin-binding protein 2 (PBP-2) 16S rRNA modification within P site of ribosome;
CBSS-83331.1.peg.3039;
Peptidoglycan Biosynthesis
fig|6666666.229917.peg.946 CDS AJMH02000019.1 66779 67900 2 + 1122 Rod shape-determining protein RodA Bacterial Cytoskeleton;
Peptidoglycan Biosynthesis
fig|6666666.229917.peg.947 CDS AJMH02000019.1 67949 68806 2 + 858 Rare lipoprotein A precursor Peptidoglycan Biosynthesis
fig|6666666.229917.peg.948 CDS AJMH02000019.1 68837 70027 2 + 1191 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) Metallocarboxypeptidases (EC 3.4.17.-);
Murein Hydrolases;
Peptidoglycan Biosynthesis
fig|6666666.229917.peg.949 CDS AJMH02000019.1 70100 70399 2 + 300 Proposed lipoate regulatory protein YbeD Lipoic acid metabolism;
Lipoic acid synthesis cluster
fig|6666666.229917.peg.950 CDS AJMH02000019.1 70445 71083 2 + 639 Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase Lipoic acid metabolism;
Lipoic acid synthesis cluster
fig|6666666.229917.peg.951 CDS AJMH02000019.1 71148 72110 3 + 963 Lipoate synthase Lipoic acid metabolism;
Lipoic acid synthesis cluster
fig|6666666.229917.peg.952 CDS AJMH02000019.1 73667 72258 -2 - 1410 Cysteinyl-tRNA synthetase (EC 6.1.1.16) tRNA aminoacylation, Cys
fig|6666666.229917.peg.953 CDS AJMH02000019.1 73737 74249 3 + 513 Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase;
Queuosine-Archaeosine Biosynthesis
fig|6666666.229917.peg.954 CDS AJMH02000019.1 74343 74498 3 + 156 hypothetical protein - none -
fig|6666666.229917.peg.955 CDS AJMH02000019.1 74491 74772 1 + 282 hypothetical protein - none -
fig|6666666.229917.peg.956 CDS AJMH02000019.1 74775 75563 3 + 789 Putative deoxyribonuclease YjjV Deoxyribose and Deoxynucleoside Catabolism;
YcfH
fig|6666666.229917.peg.957 CDS AJMH02000019.1 76057 75590 -1 - 468 Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) Ribonucleotide reduction
fig|6666666.229917.peg.958 CDS AJMH02000019.1 76091 76216 2 + 126 hypothetical protein - none -
fig|6666666.229917.peg.959 CDS AJMH02000019.1 76478 76359 -2 - 120 hypothetical protein - none -
fig|6666666.229917.peg.960 CDS AJMH02000019.1 78785 76659 -2 - 2127 Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) Ribonucleotide reduction
fig|6666666.229917.peg.961 CDS AJMH02000019.1 84402 79039 -3 - 5364 Autotransporter adhesin - none -
fig|6666666.229917.peg.962 CDS AJMH02000019.1 85264 85148 -1 - 117 hypothetical protein - none -
fig|6666666.229917.peg.963 CDS AJMH02000019.1 86183 85281 -2 - 903 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) Biotin biosynthesis;
Biotin synthesis cluster
fig|6666666.229917.peg.964 CDS AJMH02000019.1 87081 86155 -3 - 927 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) Biotin biosynthesis;
Biotin synthesis cluster
fig|6666666.229917.peg.965 CDS AJMH02000019.1 87315 87136 -3 - 180 hypothetical protein - none -
fig|6666666.229917.peg.966 CDS AJMH02000019.1 87280 90756 1 + 3477 DNA polymerase III alpha subunit (EC 2.7.7.7) - none -
fig|6666666.229917.peg.967 CDS AJMH02000019.1 91054 91212 1 + 159 hypothetical protein - none -
fig|6666666.229917.peg.968 CDS AJMH02000019.1 93339 91885 -3 - 1455 Catalase (EC 1.11.1.6) Oxidative stress;
Protection from Reactive Oxygen Species
fig|6666666.229917.peg.969 CDS AJMH02000019.1 95177 93828 -2 - 1350 NADP-specific glutamate dehydrogenase (EC 1.4.1.4) Arginine and Ornithine Degradation;
Glutamate dehydrogenases;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Proline Synthesis
fig|6666666.229917.peg.970 CDS AJMH02000019.1 96855 95479 -3 - 1377 Argininosuccinate lyase (EC 4.3.2.1) - none -
fig|6666666.229917.peg.971 CDS AJMH02000019.1 97756 96968 -1 - 789 Mannosyltransferase OCH1 and related enzymes - none -
fig|6666666.229917.peg.972 CDS AJMH02000019.1 98444 99889 2 + 1446 Glutamyl-tRNA synthetase (EC 6.1.1.17) Heme and Siroheme Biosynthesis;
tRNA aminoacylation, Glu and Gln
fig|6666666.229917.peg.973 CDS AJMH02000019.1 100336 100545 1 + 210 Cold shock protein CspG Cold shock, CspA family of proteins
fig|6666666.229917.peg.974 CDS AJMH02000019.1 101575 100643 -1 - 933 Ribokinase (EC 2.7.1.15) D-ribose utilization;
Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.229917.peg.975 CDS AJMH02000019.1 101658 101527 -3 - 132 hypothetical protein - none -
fig|6666666.229917.peg.976 CDS AJMH02000019.1 102530 101658 -2 - 873 Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229917.peg.977 CDS AJMH02000019.1 103516 102620 -1 - 897 Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229917.peg.978 CDS AJMH02000019.1 105021 103513 -3 - 1509 Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229917.peg.979 CDS AJMH02000019.1 105451 105032 -1 - 420 Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229917.peg.980 CDS AJMH02000019.1 105671 106270 2 + 600 Adenosine (5@1)-pentaphospho-(5@1@1)-adenosine pyrophosphohydrolase (EC 3.6.1.-) CBSS-224911.1.peg.435;
CBSS-364106.7.peg.3204;
Nudix proteins (nucleoside triphosphate hydrolases);
Phosphoglycerate mutase protein family
fig|6666666.229917.peg.981 CDS AJMH02000019.1 106273 107070 1 + 798 Protein of unknown function DUF81 - none -
fig|6666666.229917.peg.982 CDS AJMH02000019.1 107079 107876 3 + 798 Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-) Lipoprotein Biosynthesis
fig|6666666.229917.peg.983 CDS AJMH02000019.1 107873 108724 2 + 852 Thymidylate synthase (EC 2.1.1.45) Folate Biosynthesis;
pyrimidine conversions
fig|6666666.229917.peg.984 CDS AJMH02000019.1 109050 109577 3 + 528 tRNA-specific adenosine-34 deaminase (EC 3.5.4.-) tRNA modification Bacteria;
tRNA processing;
tRNAmodification position 34
fig|6666666.229917.peg.985 CDS AJMH02000019.1 109678 110238 1 + 561 Protein of unknown function DUF414 - none -
fig|6666666.229917.peg.986 CDS AJMH02000019.1 110251 110685 1 + 435 Periplasmic/membrane protein associated with DUF414 - none -
fig|6666666.229917.peg.987 CDS AJMH02000019.1 110704 112071 1 + 1368 Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22) Heme and Siroheme Biosynthesis
fig|6666666.229917.peg.988 CDS AJMH02000019.1 112588 112145 -1 - 444 Histone acetyltransferase HPA2 and related acetyltransferases CBSS-216591.1.peg.168
fig|6666666.229917.peg.989 CDS AJMH02000019.1 112761 113528 3 + 768 Triosephosphate isomerase (EC 5.3.1.1) CBSS-331978.3.peg.2915;
Glycolysis and Gluconeogenesis
fig|6666666.229917.peg.990 CDS AJMH02000019.1 113640 114497 3 + 858 Naphthoate synthase (EC 4.1.3.36) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229917.peg.991 CDS AJMH02000019.1 114537 114956 3 + 420 Nucleotidyltransferase substrate binding protein, HI0074 - none -
fig|6666666.229917.peg.992 CDS AJMH02000019.1 114938 115267 2 + 330 Nucleotidyltransferase (EC 2.7.7.-) - none -
fig|6666666.229917.peg.993 CDS AJMH02000019.1 115248 116249 3 + 1002 O-succinylbenzoate synthase (EC 4.2.1.113) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo;
Muconate lactonizing enzyme family
fig|6666666.229917.peg.994 CDS AJMH02000019.1 116348 116824 2 + 477 3-dehydroquinate dehydratase II (EC 4.2.1.10) CBSS-221988.1.peg.1679;
Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate);
Quinate degradation
fig|6666666.229917.peg.995 CDS AJMH02000019.1 116931 116779 -3 - 153 hypothetical protein - none -
fig|6666666.229917.peg.996 CDS AJMH02000019.1 116948 117415 2 + 468 Biotin carboxyl carrier protein of acetyl-CoA carboxylase CBSS-221988.1.peg.1679;
Fatty Acid Biosynthesis FASII
fig|6666666.229917.peg.997 CDS AJMH02000019.1 117458 118804 2 + 1347 Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14) CBSS-221988.1.peg.1679;
Fatty Acid Biosynthesis FASII
fig|6666666.229917.peg.998 CDS AJMH02000019.1 118913 119047 2 + 135 hypothetical protein - none -
fig|6666666.229917.peg.999 CDS AJMH02000019.1 119253 119867 3 + 615 Periplasmic protein TonB, links inner and outer membranes - none -
fig|6666666.229917.peg.1000 CDS AJMH02000019.1 119986 121374 1 + 1389 FOG: TPR repeat - none -
fig|6666666.229917.peg.1001 CDS AJMH02000019.1 121398 121670 3 + 273 FIG003021: Membrane protein CBSS-221988.1.peg.1679
fig|6666666.229917.peg.1002 CDS AJMH02000019.1 121667 123103 2 + 1437 Pantothenate:Na+ symporter (TC 2.A.21.1.1) CBSS-221988.1.peg.1679;
Coenzyme A Biosynthesis
fig|6666666.229917.peg.1003 CDS AJMH02000019.1 123122 123664 2 + 543 Protein involved in cell division - none -
fig|6666666.229917.peg.1004 CDS AJMH02000019.1 123677 124561 2 + 885 Ribosomal protein L11 methyltransferase (EC 2.1.1.-) Heat shock dnaK gene cluster extended;
Ribosome biogenesis bacterial
fig|6666666.229917.peg.1005 CDS AJMH02000019.1 124806 125855 3 + 1050 tRNA dihydrouridine synthase B (EC 1.-.-.-) tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229917.peg.1006 CDS AJMH02000019.1 125849 126148 2 + 300 DNA-binding protein Fis DNA structural proteins, bacterial
fig|6666666.229917.peg.1007 CDS AJMH02000019.1 127012 126764 -1 - 249 unknown - none -
fig|6666666.229917.peg.1008 CDS AJMH02000019.1 127790 127467 -2 - 324 Ribosome hibernation protein YfiA Ribosome activity modulation
fig|6666666.229917.peg.1009 CDS AJMH02000019.1 129391 128018 -1 - 1374 Sodium/glycine symporter GlyP - none -
fig|6666666.229917.peg.1010 CDS AJMH02000019.1 130060 129788 -1 - 273 FIG00904058: hypothetical protein - none -
fig|6666666.229917.peg.1011 CDS AJMH02000019.1 130272 130060 -3 - 213 FIG003276: zinc-binding protein - none -
fig|6666666.229917.peg.1012 CDS AJMH02000019.1 130885 130262 -1 - 624 Dephospho-CoA kinase (EC 2.7.1.24) Coenzyme A Biosynthesis
fig|6666666.229917.peg.1013 CDS AJMH02000019.1 131621 130935 -2 - 687 Leader peptidase (Prepilin peptidase) (EC 3.4.23.43) / N-methyltransferase (EC 2.1.1.-) Type IV pilus;
Type IV pilus
fig|6666666.229917.peg.1014 CDS AJMH02000019.1 132844 131621 -1 - 1224 Type II secretory pathway, component PulF / Type IV fimbrial assembly protein PilC Type IV pilus
fig|6666666.229917.peg.1015 CDS AJMH02000019.1 133703 132837 -2 - 867 Type IV fimbrial assembly, ATPase PilB Type IV pilus
fig|6666666.229917.peg.1016 CDS AJMH02000019.1 134052 133684 -3 - 369 Type IV fimbrial assembly, ATPase PilB Type IV pilus
fig|6666666.229917.peg.1017 CDS AJMH02000019.1 134242 134018 -1 - 225 Type IV fimbrial assembly, ATPase PilB Type IV pilus
fig|6666666.229917.peg.1018 CDS AJMH02000019.1 134721 134269 -3 - 453 Type IV pilin PilA Type IV pilus
fig|6666666.229917.peg.1019 CDS AJMH02000019.1 134744 135397 2 + 654 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD Recycling of Peptidoglycan Amino Acids
fig|6666666.229917.peg.1020 CDS AJMH02000019.1 136341 135871 -3 - 471 Putative sugar isomerase involved in processing of exogenous sialic acid Sialic Acid Metabolism
fig|6666666.229917.peg.1021 CDS AJMH02000019.1 136533 138764 3 + 2232 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) Bacterial RNA-metabolizing Zn-dependent hydrolases;
Polyadenylation bacterial
fig|6666666.229917.peg.1022 CDS AJMH02000019.1 138849 139751 3 + 903 Lipoprotein nlpI precursor - none -
fig|6666666.229917.peg.1023 CDS AJMH02000019.1 139878 141665 3 + 1788 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) - none -
fig|6666666.229917.peg.1024 CDS AJMH02000019.1 142614 143717 3 + 1104 Sugar diacid utilization regulator SdaR D-galactarate, D-glucarate and D-glycerate catabolism;
D-galactarate, D-glucarate and D-glycerate catabolism - gjo
fig|6666666.229917.peg.1025 CDS AJMH02000019.1 143849 145123 2 + 1275 D-glycerate transporter (predicted) D-galactarate, D-glucarate and D-glycerate catabolism;
D-galactarate, D-glucarate and D-glycerate catabolism - gjo;
Glycerate metabolism
fig|6666666.229917.peg.1026 CDS AJMH02000019.1 145120 146259 1 + 1140 Glycerate kinase (EC 2.7.1.31) D-galactarate, D-glucarate and D-glycerate catabolism;
D-galactarate, D-glucarate and D-glycerate catabolism - gjo;
Glycerate metabolism;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Glycine and Serine Utilization;
Serine-glyoxylate cycle
fig|6666666.229917.peg.1027 CDS AJMH02000019.1 146868 146329 -3 - 540 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) Cell division-ribosomal stress proteins cluster;
Folate biosynthesis cluster;
Purine conversions
fig|6666666.229917.peg.1028 CDS AJMH02000019.1 148468 147107 -1 - 1362 TldE protein, part of TldE/TldD proteolytic complex Putative TldE-TldD proteolytic complex
fig|6666666.229917.peg.1029 CDS AJMH02000019.1 148589 149122 2 + 534 FIG138315: Putative alpha helix protein Putative TldE-TldD proteolytic complex
fig|6666666.229917.peg.1030 CDS AJMH02000019.1 150574 149192 -1 - 1383 Arsenic efflux pump protein Arsenic resistance
fig|6666666.229917.peg.1031 CDS AJMH02000019.1 151263 150763 -3 - 501 Ribonuclease E inhibitor RraA RNA processing and degradation, bacterial
fig|6666666.229917.peg.1032 CDS AJMH02000019.1 152219 151314 -2 - 906 1,4-dihydroxy-2-naphthoate polyprenyltransferase (EC 2.5.1.74) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229917.peg.1033 CDS AJMH02000019.1 152347 153183 1 + 837 COG1720: Uncharacterized conserved protein tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229917.peg.1034 CDS AJMH02000019.1 154467 153511 -3 - 957 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229917.peg.1035 CDS AJMH02000019.1 155293 154469 -1 - 825 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229917.peg.1036 CDS AJMH02000019.1 156287 155319 -2 - 969 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229917.peg.1037 CDS AJMH02000019.1 157658 156435 -2 - 1224 Type I restriction-modification system, DNA-methyltransferase subunit M (EC 2.1.1.72) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229917.peg.1038 CDS AJMH02000019.1 158322 157936 -3 - 387 Cu(I)-responsive transcriptional regulator Copper homeostasis
fig|6666666.229917.peg.1039 CDS AJMH02000019.1 158417 158629 2 + 213 Copper chaperone Copper homeostasis
fig|6666666.229917.peg.1040 CDS AJMH02000019.1 158716 160875 1 + 2160 Copper-translocating P-type ATPase (EC 3.6.3.4) Copper Transport System;
Copper homeostasis
fig|6666666.229917.peg.1041 CDS AJMH02000019.1 160948 161793 1 + 846 membrane protein, putative - none -
fig|6666666.229917.peg.1042 CDS AJMH02000019.1 162096 162260 3 + 165 Phage-related protein - none -
fig|6666666.229917.peg.1043 CDS AJMH02000019.1 162253 162576 1 + 324 FIG074102: hypothetical protein - none -
fig|6666666.229917.peg.1044 CDS AJMH02000019.1 163880 162639 -2 - 1242 ATP-dependent Clp protease ATP-binding subunit ClpX Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229917.peg.1045 CDS AJMH02000019.1 164456 163890 -2 - 567 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent;
cAMP signaling in bacteria
fig|6666666.229917.peg.1046 CDS AJMH02000019.1 166314 164713 -3 - 1602 Dca - none -
fig|6666666.229917.peg.1047 CDS AJMH02000019.1 166546 168819 1 + 2274 Glutathione biosynthesis bifunctional protein gshF (EC 6.3.2.2)(EC 6.3.2.3) Glutathione: Biosynthesis and gamma-glutamyl cycle
fig|6666666.229917.peg.1048 CDS AJMH02000019.1 168952 170799 1 + 1848 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase
fig|6666666.229917.peg.1049 CDS AJMH02000019.1 170934 171560 3 + 627 Uracil phosphoribosyltransferase (EC 2.4.2.9) De Novo Pyrimidine Synthesis;
pyrimidine conversions
fig|6666666.229917.peg.1050 CDS AJMH02000019.1 171684 172937 3 + 1254 Uracil permease De Novo Pyrimidine Synthesis
fig|6666666.229917.peg.1051 CDS AJMH02000019.1 173071 172934 -1 - 138 hypothetical protein - none -
fig|6666666.229917.peg.1052 CDS AJMH02000019.1 173057 173761 2 + 705 Chromosomal replication initiator protein DnaA Cell Division Subsystem including YidCD;
DNA replication cluster 1
fig|6666666.229917.peg.1053 CDS AJMH02000019.1 174219 173767 -3 - 453 Putative protein-S-isoprenylcysteine methyltransferase - none -
fig|6666666.229917.peg.1054 CDS AJMH02000019.1 174886 174272 -1 - 615 Mlr7403 protein CBSS-290633.1.peg.1906;
CBSS-498211.3.peg.1415
fig|6666666.229917.peg.1055 CDS AJMH02000019.1 176174 174897 -2 - 1278 Histidyl-tRNA synthetase (EC 6.1.1.21) CBSS-498211.3.peg.1415;
tRNA aminoacylation, His
fig|6666666.229917.peg.1056 CDS AJMH02000019.1 177299 176196 -2 - 1104 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (EC 1.17.7.1) CBSS-498211.3.peg.1415;
CBSS-83331.1.peg.3039;
Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.229917.peg.1057 CDS AJMH02000019.1 178366 177311 -1 - 1056 FIG021952: putative membrane protein CBSS-498211.3.peg.1415
fig|6666666.229917.peg.1058 CDS AJMH02000019.1 179061 178510 -3 - 552 Type IV pilus biogenesis protein PilF CBSS-498211.3.peg.1415
fig|6666666.229917.peg.1059 CDS AJMH02000019.1 180222 179083 -3 - 1140 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) CBSS-498211.3.peg.1415;
Conserved gene cluster associated with Met-tRNA formyltransferase;
RNA methylation
fig|6666666.229917.peg.1060 CDS AJMH02000019.1 180517 181566 1 + 1050 L-asparaginase (EC 3.5.1.1) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229917.peg.1061 CDS AJMH02000019.1 183111 181747 -3 - 1365 L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17) Glycine and Serine Utilization;
Glycine and Serine Utilization;
Pyruvate Alanine Serine Interconversions;
Pyruvate Alanine Serine Interconversions
fig|6666666.229917.peg.1062 CDS AJMH02000019.1 184445 183204 -2 - 1242 Serine transporter Glycine and Serine Utilization;
Pyruvate Alanine Serine Interconversions
fig|6666666.229917.peg.1063 CDS AJMH02000019.1 185102 184602 -2 - 501 Protein sprT - none -
fig|6666666.229917.peg.1064 CDS AJMH02000019.1 186325 185171 -1 - 1155 S-adenosylmethionine synthetase (EC 2.5.1.6) Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229917.peg.1065 CDS AJMH02000019.1 186802 186533 -1 - 270 SSU ribosomal protein S15p (S13e) Ribosome SSU bacterial
fig|6666666.229917.peg.1066 CDS AJMH02000019.1 187647 186898 -3 - 750 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase (EC 4.2.99.20) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229917.peg.1067 CDS AJMH02000019.1 189406 187700 -1 - 1707 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase (EC 2.2.1.9) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229917.peg.1068 CDS AJMH02000019.1 190701 189397 -3 - 1305 Menaquinone-specific isochorismate synthase (EC 5.4.4.2) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229917.peg.1069 CDS AJMH02000019.1 190818 192032 3 + 1215 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229917.peg.1070 CDS AJMH02000019.1 192884 192153 -2 - 732 Transcriptional regulator for fatty acid degradation FadR, GntR family - none -
fig|6666666.229917.peg.1071 CDS AJMH02000019.1 193247 194623 2 + 1377 Na+/H+ antiporter NhaB - none -
fig|6666666.229917.peg.1072 CDS AJMH02000019.1 194647 195186 1 + 540 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation Biogenesis of c-type cytochromes;
Periplasmic disulfide interchange
fig|6666666.229917.peg.1073 CDS AJMH02000019.1 195375 195229 -3 - 147 hypothetical protein - none -
fig|6666666.229917.peg.1074 CDS AJMH02000019.1 196816 195386 -1 - 1431 Transglycosylase, Slt family - none -
fig|6666666.229917.peg.1075 CDS AJMH02000019.1 197190 196837 -3 - 354 Dihydroneopterin aldolase (EC 4.1.2.25) Folate Biosynthesis;
Folate biosynthesis cluster
fig|6666666.229917.peg.1076 CDS AJMH02000019.1 197287 197883 1 + 597 Acyl-phosphate:glycerol-3-phosphate O-acyltransferase PlsY Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229917.peg.1077 CDS AJMH02000019.1 198416 197973 -2 - 444 FIG00904084: hypothetical protein - none -
fig|6666666.229917.peg.1078 CDS AJMH02000019.1 198556 199383 1 + 828 YpfJ protein, zinc metalloprotease superfamily Broadly distributed proteins not in subsystems
fig|6666666.229917.peg.1079 CDS AJMH02000019.1 200378 199587 -2 - 792 putative lipoprotein - none -
fig|6666666.229917.peg.1080 CDS AJMH02000019.1 201433 200789 -1 - 645 Manganese superoxide dismutase (EC 1.15.1.1) Oxidative stress;
Protection from Reactive Oxygen Species
fig|6666666.229917.peg.1081 CDS AJMH02000019.1 203841 201577 -3 - 2265 NADP-dependent malic enzyme (EC 1.1.1.40) Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229917.peg.1082 CDS AJMH02000019.1 204016 203834 -1 - 183 hypothetical protein - none -
fig|6666666.229917.peg.1083 CDS AJMH02000019.1 204058 204759 1 + 702 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses
fig|6666666.229917.peg.1084 CDS AJMH02000019.1 204764 205861 2 + 1098 Bicyclomycin resistance protein - none -
fig|6666666.229917.peg.1085 CDS AJMH02000019.1 205812 205979 3 + 168 hypothetical protein - none -
fig|6666666.229917.peg.1086 CDS AJMH02000019.1 206128 206763 1 + 636 ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA Biogenesis of c-type cytochromes
fig|6666666.229917.peg.1087 CDS AJMH02000019.1 206768 207433 2 + 666 ABC transporter involved in cytochrome c biogenesis, CcmB subunit Biogenesis of c-type cytochromes
fig|6666666.229917.peg.1088 CDS AJMH02000019.1 207444 208181 3 + 738 Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE Biogenesis of c-type cytochromes
fig|6666666.229917.peg.1089 CDS AJMH02000019.1 208199 208405 2 + 207 Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE Biogenesis of c-type cytochromes
fig|6666666.229917.peg.1090 CDS AJMH02000019.1 208402 208920 1 + 519 Cytochrome c-type biogenesis protein CcmE, heme chaperone Biogenesis of c-type cytochromes
fig|6666666.229917.peg.1091 CDS AJMH02000019.1 208920 210878 3 + 1959 Cytochrome c heme lyase subunit CcmF Biogenesis of c-type cytochromes;
Copper homeostasis
fig|6666666.229917.peg.1092 CDS AJMH02000019.1 210907 211452 1 + 546 Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase Biogenesis of c-type cytochromes;
Periplasmic disulfide interchange
fig|6666666.229917.peg.1093 CDS AJMH02000019.1 211551 212003 3 + 453 Cytochrome c heme lyase subunit CcmL Biogenesis of c-type cytochromes
fig|6666666.229917.peg.1094 CDS AJMH02000019.1 212003 212926 2 + 924 Cytochrome c heme lyase subunit CcmH Biogenesis of c-type cytochromes;
Copper homeostasis
fig|6666666.229917.peg.1095 CDS AJMH02000019.1 213061 213183 1 + 123 hypothetical protein - none -
fig|6666666.229917.peg.1096 CDS AJMH02000019.1 213211 213684 1 + 474 Parvulin-like peptidyl-prolyl isomerase - none -
fig|6666666.229917.peg.1097 CDS AJMH02000019.1 213702 213992 3 + 291 hypothetical protein - none -
fig|6666666.229917.peg.1098 CDS AJMH02000019.1 214569 216092 3 + 1524 Cytochrome c552 precursor (EC 1.7.2.2) Soluble cytochromes and functionally related electron carriers
fig|6666666.229917.peg.1099 CDS AJMH02000019.1 216166 216831 1 + 666 Cytochrome c-type protein NrfB precursor - none -
fig|6666666.229917.peg.1100 CDS AJMH02000019.1 216828 217505 3 + 678 NrfC protein - none -
fig|6666666.229917.peg.1101 CDS AJMH02000019.1 217502 218467 2 + 966 NrfD protein - none -
fig|6666666.229917.peg.1102 CDS AJMH02000019.1 219032 218664 -2 - 369 hypothetical protein - none -
fig|6666666.229917.peg.1103 CDS AJMH02000019.1 219054 220964 3 + 1911 Cytochrome c-type heme lyase subunit nrfE, nitrite reductase complex assembly - none -
fig|6666666.229917.peg.1104 CDS AJMH02000019.1 220957 221487 1 + 531 Putative thiol:disulfide oxidoreductase, nitrite reductase complex assembly - none -
fig|6666666.229917.peg.1105 CDS AJMH02000019.1 221484 222533 3 + 1050 Cytochrome c-type heme lyase subunit nrfF, nitrite reductase complex assembly - none -
fig|6666666.229917.peg.1106 CDS AJMH02000019.1 222530 223729 2 + 1200 NAD(FAD)-utilizing dehydrogenases - none -
fig|6666666.229917.peg.1107 CDS AJMH02000019.1 225586 223949 -1 - 1638 NAD-dependent malic enzyme (EC 1.1.1.38) Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229917.peg.1108 CDS AJMH02000019.1 225737 225988 2 + 252 Transcriptional regulator, XRE family - none -
fig|6666666.229917.peg.1109 CDS AJMH02000020.1 599 345 -2 - 255 hypothetical protein - none -
fig|6666666.229917.peg.1110 CDS AJMH02000020.1 1121 783 -2 - 339 Preprotein translocase subunit SecG (TC 3.A.5.1.1) CBSS-331978.3.peg.2915;
Murein hydrolase regulation and cell death
fig|6666666.229917.peg.1111 CDS AJMH02000020.1 1280 1149 -2 - 132 hypothetical protein - none -
fig|6666666.229917.peg.1112 CDS AJMH02000020.1 3231 1294 -3 - 1938 DNA topoisomerase III (EC 5.99.1.2) DNA processing cluster;
DNA topoisomerases, Type I, ATP-independent
fig|6666666.229917.peg.1113 CDS AJMH02000020.1 3865 3263 -1 - 603 Recombination protein RecR DNA processing cluster;
DNA repair, bacterial RecFOR pathway
fig|6666666.229917.peg.1114 CDS AJMH02000020.1 4393 3950 -1 - 444 FIG000557: hypothetical protein co-occurring with RecR DNA processing cluster
fig|6666666.229917.peg.1115 CDS AJMH02000020.1 4464 5534 3 + 1071 Phosphoesterase (EC 3.1.-.-) - none -
fig|6666666.229917.peg.1116 CDS AJMH02000020.1 5605 6498 1 + 894 Iron(III) dicitrate transport system, periplasmic iron-binding protein FecB (TC 3.A.1.14.1) - none -
fig|6666666.229917.peg.1117 CDS AJMH02000020.1 6498 7487 3 + 990 Iron(III) dicitrate transport system permease protein FecC (TC 3.A.1.14.1) - none -
fig|6666666.229917.peg.1118 CDS AJMH02000020.1 7487 8470 2 + 984 Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1) - none -
fig|6666666.229917.peg.1119 CDS AJMH02000020.1 8470 9237 1 + 768 Iron(III) dicitrate transport ATP-binding protein FecE (TC 3.A.1.14.1) - none -
fig|6666666.229917.peg.1120 CDS AJMH02000020.1 10274 9303 -2 - 972 Translation elongation factor P Lys34:lysine transferase Translation elongation factor P lysylation
fig|6666666.229917.peg.1121 CDS AJMH02000020.1 10338 10526 3 + 189 hypothetical protein - none -
fig|6666666.229917.peg.1122 CDS AJMH02000020.1 10582 12390 1 + 1809 Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) Serine-glyoxylate cycle;
Succinate dehydrogenase;
TCA Cycle
fig|6666666.229917.peg.1123 CDS AJMH02000020.1 12395 13165 2 + 771 Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) 5-FCL-like protein;
Serine-glyoxylate cycle;
Succinate dehydrogenase;
TCA Cycle
fig|6666666.229917.peg.1124 CDS AJMH02000020.1 13177 13569 1 + 393 Fumarate reductase subunit C Succinate dehydrogenase
fig|6666666.229917.peg.1125 CDS AJMH02000020.1 13579 13923 1 + 345 Fumarate reductase subunit D Succinate dehydrogenase
fig|6666666.229917.peg.1126 CDS AJMH02000020.1 16167 14020 -3 - 2148 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) RNA methylation
fig|6666666.229917.peg.1127 CDS AJMH02000020.1 16438 17466 1 + 1029 Alcohol dehydrogenase (EC 1.1.1.1) 5-FCL-like protein;
Butanol Biosynthesis;
Fermentations: Mixed acid;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229917.peg.1128 CDS AJMH02000020.1 18759 17545 -3 - 1215 ATPase component BioM of energizing module of biotin ECF transporter Biotin biosynthesis;
Biotin synthesis cluster;
ECF class transporters
fig|6666666.229917.peg.1129 CDS AJMH02000020.1 19582 18884 -1 - 699 Queuosine Biosynthesis QueC ATPase Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229917.peg.1130 CDS AJMH02000020.1 19753 19616 -1 - 138 Queuosine Biosynthesis QueC ATPase Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229917.peg.1131 CDS AJMH02000020.1 19937 20401 2 + 465 FIG00710847: hypothetical protein - none -
fig|6666666.229917.peg.1132 CDS AJMH02000020.1 20374 21198 1 + 825 FIG00711691: hypothetical protein - none -
fig|6666666.229917.peg.1133 CDS AJMH02000020.1 21609 21430 -3 - 180 hypothetical protein - none -
fig|6666666.229917.peg.1134 CDS AJMH02000020.1 22533 21709 -3 - 825 3@1,5@1-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17) cAMP signaling in bacteria
fig|6666666.229917.peg.1135 CDS AJMH02000020.1 23207 22584 -2 - 624 ADP-ribose pyrophosphatase (EC 3.6.1.13) CBSS-216591.1.peg.168;
NAD and NADP cofactor biosynthesis global;
Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229917.peg.1136 CDS AJMH02000020.1 24133 23453 -1 - 681 FIG009095: D,D-carboxypeptidase family protein CBSS-584.1.peg.1352
fig|6666666.229917.peg.1137 CDS AJMH02000020.1 25268 24135 -2 - 1134 N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18) A Glutathione-dependent Thiol Reductase Associated with a Step in Lysine Biosynthesis;
CBSS-584.1.peg.1352;
Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229917.peg.1138 CDS AJMH02000020.1 25749 25405 -3 - 345 FIG138056: a glutathione-dependent thiol reductase A Glutathione-dependent Thiol Reductase Associated with a Step in Lysine Biosynthesis;
CBSS-584.1.peg.1352
fig|6666666.229917.peg.1139 CDS AJMH02000020.1 27695 25815 -2 - 1881 Chaperone protein HtpG Protein chaperones
fig|6666666.229917.peg.1140 CDS AJMH02000020.1 29106 27829 -3 - 1278 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) Chorismate Synthesis;
Chorismate Synthesis;
Phenylalanine and Tyrosine Branches from Chorismate;
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229917.peg.1141 CDS AJMH02000020.1 30104 29187 -2 - 918 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC 3.5.1.108) KDO2-Lipid A biosynthesis
fig|6666666.229917.peg.1142 CDS AJMH02000020.1 31425 30142 -3 - 1284 Cell division protein FtsZ (EC 3.4.24.-) Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ;
cell division core of larger cluster
fig|6666666.229917.peg.1143 CDS AJMH02000020.1 32753 31509 -2 - 1245 Cell division protein FtsA Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ;
cell division core of larger cluster
fig|6666666.229917.peg.1144 CDS AJMH02000020.1 33581 32814 -2 - 768 Cell division protein FtsQ Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ;
cell division core of larger cluster
fig|6666666.229917.peg.1145 CDS AJMH02000020.1 34507 33578 -1 - 930 D-alanine--D-alanine ligase (EC 6.3.2.4) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo;
cell division cluster containing FtsQ
fig|6666666.229917.peg.1146 CDS AJMH02000020.1 35950 34520 -1 - 1431 UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo;
cell division cluster containing FtsQ
fig|6666666.229917.peg.1147 CDS AJMH02000020.1 37085 36021 -2 - 1065 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) Peptidoglycan Biosynthesis;
cell division core of larger cluster
fig|6666666.229917.peg.1148 CDS AJMH02000020.1 38316 37126 -3 - 1191 Cell division protein FtsW Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ
fig|6666666.229917.peg.1149 CDS AJMH02000020.1 39635 38331 -2 - 1305 UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC 6.3.2.9) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo
fig|6666666.229917.peg.1150 CDS AJMH02000020.1 40747 39662 -1 - 1086 Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC 2.7.8.13) Peptidoglycan Biosynthesis
fig|6666666.229917.peg.1151 CDS AJMH02000020.1 42120 40741 -3 - 1380 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase (EC 6.3.2.10) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo
fig|6666666.229917.peg.1152 CDS AJMH02000020.1 43593 42127 -3 - 1467 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo
fig|6666666.229917.peg.1153 CDS AJMH02000020.1 45434 43611 -2 - 1824 Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129) 16S rRNA modification within P site of ribosome;
Bacterial Cell Division;
Bacterial Cytoskeleton;
CBSS-83331.1.peg.3039;
Peptidoglycan Biosynthesis
fig|6666666.229917.peg.1154 CDS AJMH02000020.1 45769 45452 -1 - 318 Cell division protein FtsL 16S rRNA modification within P site of ribosome;
Bacterial Cell Division;
Bacterial Cytoskeleton;
Stationary phase repair cluster
fig|6666666.229917.peg.1155 CDS AJMH02000020.1 46737 45769 -3 - 969 rRNA small subunit methyltransferase H 16S rRNA modification within P site of ribosome;
Bacterial Cell Division
fig|6666666.229917.peg.1156 CDS AJMH02000020.1 47305 46847 -1 - 459 Cell division protein MraZ 16S rRNA modification within P site of ribosome;
Bacterial Cell Division;
Bacterial Cytoskeleton
fig|6666666.229917.peg.1157 CDS AJMH02000020.1 49166 47568 -2 - 1599 Carbon starvation protein A Carbon Starvation
fig|6666666.229917.peg.1158 CDS AJMH02000020.1 49349 49471 2 + 123 hypothetical protein - none -
fig|6666666.229917.peg.1159 CDS AJMH02000020.1 50392 49706 -1 - 687 Arginine ABC transporter, permease protein ArtM Arginine and Ornithine Degradation
fig|6666666.229917.peg.1160 CDS AJMH02000020.1 51054 50392 -3 - 663 Arginine ABC transporter, permease protein ArtQ Arginine and Ornithine Degradation
fig|6666666.229917.peg.1161 CDS AJMH02000020.1 51778 51059 -1 - 720 Arginine ABC transporter, periplasmic arginine-binding protein ArtI Arginine and Ornithine Degradation
fig|6666666.229917.peg.1162 CDS AJMH02000020.1 52440 51799 -3 - 642 Arginine ABC transporter, ATP-binding protein ArtP Arginine and Ornithine Degradation
fig|6666666.229917.peg.1163 CDS AJMH02000021.1 1 1299 1 + 1299 Alanyl-tRNA synthetase (EC 6.1.1.7) Cluster containing Alanyl-tRNA synthetase;
tRNA aminoacylation, Ala
fig|6666666.229917.peg.1164 CDS AJMH02000021.1 1422 1604 3 + 183 Carbon storage regulator Carbon Starvation;
Carbon storage regulator
fig|6666666.229917.peg.1165 CDS AJMH02000021.1 1636 3000 1 + 1365 Phosphomannomutase (EC 5.4.2.8) Mannose Metabolism
fig|6666666.229917.peg.1166 CDS AJMH02000021.1 3076 3963 1 + 888 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) - none -
fig|6666666.229917.peg.1167 CDS AJMH02000021.1 4118 4435 2 + 318 Methionine repressor MetJ Methionine Biosynthesis
fig|6666666.229917.peg.1168 CDS AJMH02000021.1 4523 4392 -2 - 132 hypothetical protein - none -
fig|6666666.229917.peg.1169 CDS AJMH02000021.1 4621 5256 1 + 636 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) Cluster containing Glutathione synthetase;
Heat shock dnaK gene cluster extended;
RNA methylation
fig|6666666.229917.peg.1170 CDS AJMH02000021.1 5273 5830 2 + 558 UPF0301 protein YqgE Cluster containing Glutathione synthetase
fig|6666666.229917.peg.1171 CDS AJMH02000021.1 5830 6249 1 + 420 Putative Holliday junction resolvase YggF Cluster containing Alanyl-tRNA synthetase;
Cluster containing Glutathione synthetase
fig|6666666.229917.peg.1172 CDS AJMH02000021.1 7655 6345 -2 - 1311 Enolase (EC 4.2.1.11) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis;
Serine-glyoxylate cycle
fig|6666666.229917.peg.1173 CDS AJMH02000021.1 7840 7724 -1 - 117 hypothetical protein - none -
fig|6666666.229917.peg.1174 CDS AJMH02000021.1 9444 8293 -3 - 1152 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) CBSS-354.1.peg.876;
RNA methylation;
Riboflavin, FMN and FAD metabolism in plants;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229917.peg.1175 CDS AJMH02000021.1 9962 9705 -2 - 258 Probable exported or periplasmic protein in ApbE locus Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229917.peg.1176 CDS AJMH02000021.1 11129 10041 -2 - 1089 Thiamin biosynthesis lipoprotein ApbE - none -
fig|6666666.229917.peg.1177 CDS AJMH02000021.1 11296 11126 -1 - 171 hypothetical protein - none -
fig|6666666.229917.peg.1178 CDS AJMH02000021.1 12515 11280 -2 - 1236 Na(+)-translocating NADH-quinone reductase subunit F (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229917.peg.1179 CDS AJMH02000021.1 13123 12527 -1 - 597 Na(+)-translocating NADH-quinone reductase subunit E (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229917.peg.1180 CDS AJMH02000021.1 13756 13127 -1 - 630 Na(+)-translocating NADH-quinone reductase subunit D (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229917.peg.1181 CDS AJMH02000021.1 14541 13756 -3 - 786 Na(+)-translocating NADH-quinone reductase subunit C (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229917.peg.1182 CDS AJMH02000021.1 15769 14534 -1 - 1236 Na(+)-translocating NADH-quinone reductase subunit B (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229917.peg.1183 CDS AJMH02000021.1 17112 15772 -3 - 1341 Na(+)-translocating NADH-quinone reductase subunit A (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229917.peg.1184 CDS AJMH02000021.1 17194 17331 1 + 138 hypothetical protein - none -
fig|6666666.229917.peg.1185 CDS AJMH02000021.1 17458 17342 -1 - 117 hypothetical protein - none -
fig|6666666.229917.peg.1186 CDS AJMH02000021.1 17779 17468 -1 - 312 Cell division protein BolA Bacterial Cell Division;
CBSS-339671.5.peg.589
fig|6666666.229917.peg.1187 CDS AJMH02000021.1 17883 18476 3 + 594 Hypothetical lipoprotein YajG precursor CBSS-339671.5.peg.589
fig|6666666.229917.peg.1188 CDS AJMH02000021.1 18582 18457 -3 - 126 hypothetical protein - none -
fig|6666666.229917.peg.1189 CDS AJMH02000021.1 20037 18958 -3 - 1080 Membrane-bound lytic murein transglycosylase C precursor (EC 3.2.1.-) Murein Hydrolases
fig|6666666.229917.peg.1190 CDS AJMH02000021.1 20318 20040 -2 - 279 FIG001341: Probable Fe(2+)-trafficking protein YggX Heat shock dnaK gene cluster extended
fig|6666666.229917.peg.1191 CDS AJMH02000021.1 21486 20296 -3 - 1191 A/G-specific adenine glycosylase (EC 3.2.2.-) DNA repair, bacterial
fig|6666666.229917.peg.1192 CDS AJMH02000021.1 21652 22419 1 + 768 tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33) CBSS-83333.1.peg.2911;
RNA methylation;
tRNA modification Bacteria
fig|6666666.229917.peg.1193 CDS AJMH02000021.1 22450 22791 1 + 342 FIG002060: uncharacterized protein YggL CBSS-83333.1.peg.2911
fig|6666666.229917.peg.1194 CDS AJMH02000021.1 23010 24008 3 + 999 Ferric iron ABC transporter, iron-binding protein Iron acquisition in Streptococcus
fig|6666666.229917.peg.1195 CDS AJMH02000021.1 24089 25609 2 + 1521 Ferric iron ABC transporter, permease protein Iron acquisition in Streptococcus
fig|6666666.229917.peg.1196 CDS AJMH02000021.1 25625 26683 2 + 1059 Ferric iron ABC transporter, ATP-binding protein Iron acquisition in Streptococcus
fig|6666666.229917.peg.1197 CDS AJMH02000021.1 27009 26704 -3 - 306 tRNA-dihydrouridine synthase C (EC 1.-.-.-) Murein hydrolase regulation and cell death;
tRNA modification Bacteria
fig|6666666.229917.peg.1198 CDS AJMH02000021.1 27443 27009 -2 - 435 tRNA-dihydrouridine synthase C (EC 1.-.-.-) Murein hydrolase regulation and cell death;
tRNA modification Bacteria
fig|6666666.229917.peg.1199 CDS AJMH02000021.1 27671 27447 -2 - 225 tRNA-dihydrouridine synthase C (EC 1.-.-.-) Murein hydrolase regulation and cell death;
tRNA modification Bacteria
fig|6666666.229917.peg.1200 CDS AJMH02000021.1 28550 27675 -2 - 876 DnaJ-like protein DjlA - none -
fig|6666666.229917.peg.1201 CDS AJMH02000021.1 29276 28632 -2 - 645 Orotate phosphoribosyltransferase (EC 2.4.2.10) De Novo Pyrimidine Synthesis
fig|6666666.229917.peg.1202 CDS AJMH02000021.1 30002 29286 -2 - 717 Ribonuclease PH (EC 2.7.7.56) Heat shock dnaK gene cluster extended;
tRNA processing
fig|6666666.229917.peg.1203 CDS AJMH02000021.1 30120 30983 3 + 864 Protein YicC CBSS-323097.3.peg.2594
fig|6666666.229917.peg.1204 CDS AJMH02000021.1 31011 31898 3 + 888 Folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress - none -
fig|6666666.229917.peg.1205 CDS AJMH02000021.1 32017 32406 1 + 390 Patatin-like phospholipase - none -
fig|6666666.229917.peg.1206 CDS AJMH02000021.1 32481 33203 3 + 723 SSU ribosomal protein S2p (SAe) CBSS-312309.3.peg.1965;
Ribosome SSU bacterial;
Ribosome recycling related cluster
fig|6666666.229917.peg.1207 CDS AJMH02000021.1 33358 34206 1 + 849 Translation elongation factor Ts CBSS-312309.3.peg.1965;
Ribosome recycling related cluster
fig|6666666.229917.peg.1208 CDS AJMH02000021.1 34503 35189 3 + 687 DNA recombination and repair protein RecO CBSS-176299.4.peg.1292;
DNA repair, bacterial RecFOR pathway;
Glycyl-tRNA synthetase containing cluster
fig|6666666.229917.peg.1209 CDS AJMH02000021.1 35191 36507 1 + 1317 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) RNA methylation
fig|6666666.229917.peg.1210 CDS AJMH02000021.1 36517 38748 1 + 2232 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I CBSS-176299.4.peg.1292;
Stringent Response, (p)ppGpp metabolism
fig|6666666.229917.peg.1211 CDS AJMH02000021.1 38773 39129 1 + 357 Diacylglycerol kinase (EC 2.7.1.107) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Riboflavin synthesis cluster
fig|6666666.229917.peg.1212 CDS AJMH02000022.1 270 154 -3 - 117 SSU ribosomal protein S12p (S23e) Ribosomal protein S12p Asp methylthiotransferase;
Ribosome SSU bacterial
fig|6666666.229917.peg.1213 CDS AJMH02000022.1 733 434 -1 - 300 Ketol-acid reductoisomerase (EC 1.1.1.86) Coenzyme A Biosynthesis
fig|6666666.229917.peg.1214 CDS AJMH02000022.1 1374 1559 3 + 186 HTH-type transcriptional regulator IlvY Alanine biosynthesis;
LysR-family proteins in Escherichia coli;
LysR-family proteins in Salmonella enterica Typhimurium
fig|6666666.229917.peg.1215 CDS AJMH02000022.1 1592 2473 2 + 882 Protein rarD - none -
fig|6666666.229917.peg.1216 CDS AJMH02000022.1 3268 2468 -1 - 801 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) Chorismate Synthesis;
Cluster containing Alanyl-tRNA synthetase;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229917.peg.1217 CDS AJMH02000022.1 3823 3272 -1 - 552 TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA - none -
fig|6666666.229917.peg.1218 CDS AJMH02000022.1 4376 3828 -2 - 549 Similar to C-terminal Zn-finger domain of DNA topoisomerase I Conserved gene cluster associated with Met-tRNA formyltransferase;
DNA topoisomerases, Type I, ATP-independent
fig|6666666.229917.peg.1219 CDS AJMH02000022.1 4379 4540 2 + 162 DNA recombination protein RmuC DNA repair, bacterial
fig|6666666.229917.peg.1220 CDS AJMH02000022.1 4543 6129 1 + 1587 DNA recombination protein RmuC DNA repair, bacterial
fig|6666666.229917.peg.1221 CDS AJMH02000022.1 6254 6802 2 + 549 FIG00903983: hypothetical protein - none -
fig|6666666.229917.peg.1222 CDS AJMH02000022.1 6814 7140 1 + 327 Thiosulfate sulfurtransferase GlpE (EC 2.8.1.1) Single-Rhodanese-domain proteins
fig|6666666.229917.peg.1223 CDS AJMH02000022.1 7466 7152 -2 - 315 Uncharacterized protein PM1437 - none -
fig|6666666.229917.peg.1224 CDS AJMH02000022.1 7509 8384 3 + 876 GlpG protein (membrane protein of glp regulon) - none -
fig|6666666.229917.peg.1225 CDS AJMH02000022.1 8446 9201 1 + 756 Glycerol-3-phosphate regulon repressor GlpR - none -
fig|6666666.229917.peg.1226 CDS AJMH02000022.1 9545 12271 2 + 2727 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229917.peg.1227 CDS AJMH02000022.1 14677 12860 -1 - 1818 ABC transporter ATP-binding protein - none -
fig|6666666.229917.peg.1228 CDS AJMH02000022.1 14801 16459 2 + 1659 Mediator of hyperadherence YidE - none -
fig|6666666.229917.peg.1229 CDS AJMH02000022.1 16558 16427 -1 - 132 hypothetical protein - none -
fig|6666666.229917.peg.1230 CDS AJMH02000022.1 16616 17329 2 + 714 Uridine monophosphate kinase (EC 2.7.4.22) CBSS-312309.3.peg.1965;
Ribosome recycling related cluster
fig|6666666.229917.peg.1231 CDS AJMH02000022.1 17397 17540 3 + 144 hypothetical protein - none -
fig|6666666.229917.peg.1232 CDS AJMH02000022.1 17554 18111 1 + 558 Ribosome recycling factor Ribosome recycling related cluster;
Translation termination factors bacterial
fig|6666666.229917.peg.1233 CDS AJMH02000022.1 18140 19423 2 + 1284 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.267) CBSS-83331.1.peg.3039;
Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.229917.peg.1234 CDS AJMH02000022.1 19445 20164 2 + 720 Undecaprenyl diphosphate synthase (EC 2.5.1.31) CBSS-83331.1.peg.3039;
Isoprenoid Biosynthesis;
Isoprenoinds for Quinones;
Polyprenyl Diphosphate Biosynthesis
fig|6666666.229917.peg.1235 CDS AJMH02000022.1 20179 21048 1 + 870 Phosphatidate cytidylyltransferase (EC 2.7.7.41) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229917.peg.1236 CDS AJMH02000022.1 21057 22391 3 + 1335 Membrane-associated zinc metalloprotease - none -
fig|6666666.229917.peg.1237 CDS AJMH02000022.1 22410 24821 3 + 2412 Outer membrane protein assembly factor YaeT precursor Lipopolysaccharide assembly;
Llipid A biosynthesis cluster
fig|6666666.229917.peg.1238 CDS AJMH02000022.1 24924 25499 3 + 576 Outer membrane chaperone Skp (OmpH) precursor @ Outer membrane protein H precursor Lipopolysaccharide assembly;
Llipid A biosynthesis cluster;
Periplasmic Stress Response
fig|6666666.229917.peg.1239 CDS AJMH02000022.1 25499 26521 2 + 1023 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC 2.3.1.191) - none -
fig|6666666.229917.peg.1240 CDS AJMH02000022.1 26658 27068 3 + 411 3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabZ form (EC 4.2.1.59) Fatty Acid Biosynthesis FASII;
Llipid A biosynthesis cluster
fig|6666666.229917.peg.1241 CDS AJMH02000022.1 27089 27877 2 + 789 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase (EC 2.3.1.129) KDO2-Lipid A biosynthesis;
Llipid A biosynthesis cluster
fig|6666666.229917.peg.1242 CDS AJMH02000022.1 27962 29146 2 + 1185 Lipid-A-disaccharide synthase (EC 2.4.1.182) KDO2-Lipid A biosynthesis;
Llipid A biosynthesis cluster
fig|6666666.229917.peg.1243 CDS AJMH02000022.1 29139 29738 3 + 600 Ribonuclease HII (EC 3.1.26.4) Conserved gene cluster associated with Met-tRNA formyltransferase;
Ribonuclease H
fig|6666666.229917.peg.1244 CDS AJMH02000022.1 29778 31646 3 + 1869 Putative transport protein - none -
fig|6666666.229917.peg.1245 CDS AJMH02000022.1 31657 32265 1 + 609 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229917.peg.1246 CDS AJMH02000022.1 32276 32497 2 + 222 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229917.peg.1247 CDS AJMH02000022.1 32526 33107 3 + 582 Molybdopterin biosynthesis molybdochelatase MogA Molybdenum cofactor biosynthesis
fig|6666666.229917.peg.1248 CDS AJMH02000022.1 33786 33670 -3 - 117 hypothetical protein - none -
fig|6666666.229917.peg.1249 CDS AJMH02000023.1 7 213 1 + 207 Ferric iron ABC transporter, iron-binding protein Iron acquisition in Streptococcus
fig|6666666.229917.peg.1250 CDS AJMH02000023.1 265 2298 1 + 2034 Ferric iron ABC transporter, permease protein Iron acquisition in Streptococcus
fig|6666666.229917.peg.1251 CDS AJMH02000023.1 2282 3322 2 + 1041 Sulfate and thiosulfate import ATP-binding protein CysA (EC 3.6.3.25) Cysteine Biosynthesis;
Uptake of selenate and selenite
fig|6666666.229917.peg.1252 CDS AJMH02000023.1 3397 3281 -1 - 117 hypothetical protein - none -
fig|6666666.229917.peg.1253 CDS AJMH02000023.1 5433 3382 -3 - 2052 Periplasmic alpha-amylase (EC 3.2.1.1) Maltose and Maltodextrin Utilization
fig|6666666.229917.peg.1254 CDS AJMH02000023.1 6418 5528 -1 - 891 Maltose/maltodextrin ABC transporter, permease protein MalG Maltose and Maltodextrin Utilization
fig|6666666.229917.peg.1255 CDS AJMH02000023.1 7984 6440 -1 - 1545 Maltose/maltodextrin ABC transporter, permease protein MalF Maltose and Maltodextrin Utilization
fig|6666666.229917.peg.1256 CDS AJMH02000023.1 8139 8008 -3 - 132 hypothetical protein - none -
fig|6666666.229917.peg.1257 CDS AJMH02000023.1 9298 8108 -1 - 1191 Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein MalE Alpha-Amylase locus in Streptocococcus;
Bacterial Chemotaxis;
Maltose and Maltodextrin Utilization
fig|6666666.229917.peg.1258 CDS AJMH02000023.1 9755 10873 2 + 1119 Maltose/maltodextrin transport ATP-binding protein MalK (EC 3.6.3.19) Maltose and Maltodextrin Utilization
fig|6666666.229917.peg.1259 CDS AJMH02000023.1 10950 12233 3 + 1284 Maltoporin (maltose/maltodextrin high-affinity receptor, phage lambda receptor protein) Maltose and Maltodextrin Utilization
fig|6666666.229917.peg.1260 CDS AJMH02000023.1 12319 13218 1 + 900 Maltose operon periplasmic protein MalM Maltose and Maltodextrin Utilization
fig|6666666.229917.peg.1261 CDS AJMH02000023.1 13289 13420 2 + 132 hypothetical protein - none -
fig|6666666.229917.peg.1262 CDS AJMH02000023.1 14327 13596 -2 - 732 Molybdopterin biosynthesis protein MoeB Molybdenum cofactor biosynthesis
fig|6666666.229917.peg.1263 CDS AJMH02000023.1 15557 14343 -2 - 1215 Molybdopterin biosynthesis protein MoeA Molybdenum cofactor biosynthesis
fig|6666666.229917.peg.1264 CDS AJMH02000023.1 15686 16342 2 + 657 GTP cyclohydrolase I (EC 3.5.4.16) type 1 Folate Biosynthesis;
Folate biosynthesis cluster;
Molybdenum cofactor biosynthesis;
Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229917.peg.1265 CDS AJMH02000023.1 17885 16443 -2 - 1443 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) Metallocarboxypeptidases (EC 3.4.17.-);
Murein Hydrolases;
Peptidoglycan Biosynthesis
fig|6666666.229917.peg.1266 CDS AJMH02000023.1 18014 18490 2 + 477 Transcription elongation factor GreA Transcription factors bacterial
fig|6666666.229917.peg.1267 CDS AJMH02000023.1 18865 18563 -1 - 303 FIG004454: RNA binding protein - none -
fig|6666666.229917.peg.1268 CDS AJMH02000023.1 19033 19332 1 + 300 Phage-related protein - none -
fig|6666666.229917.peg.1269 CDS AJMH02000023.1 19329 19625 3 + 297 FIG045511: hypothetical antitoxin (to FIG022160: hypothetical toxin) - none -
fig|6666666.229917.peg.1270 CDS AJMH02000023.1 20272 19658 -1 - 615 Riboflavin synthase eubacterial/eukaryotic (EC 2.5.1.9) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster;
riboflavin to FAD
fig|6666666.229917.peg.1271 CDS AJMH02000023.1 20299 21696 1 + 1398 Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps Multidrug Resistance Efflux Pumps;
Riboflavin, FMN and FAD metabolism in plants
fig|6666666.229917.peg.1272 CDS AJMH02000023.1 22479 22000 -3 - 480 Cys-tRNA(Pro) deacylase YbaK tRNA aminoacylation, Pro
fig|6666666.229917.peg.1273 CDS AJMH02000023.1 22540 23343 1 + 804 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch;
Threonine and Homoserine Biosynthesis
fig|6666666.229917.peg.1274 CDS AJMH02000023.1 23328 23777 3 + 450 Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229917.peg.1275 CDS AJMH02000023.1 23746 24549 1 + 804 Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229917.peg.1276 CDS AJMH02000023.1 24552 25166 3 + 615 ABC transporter ATP-binding protein - none -
fig|6666666.229917.peg.1277 CDS AJMH02000023.1 25163 26023 2 + 861 Molybdenum transport system protein ModD Molybdenum cofactor biosynthesis
fig|6666666.229917.peg.1278 CDS AJMH02000023.1 26319 27767 3 + 1449 TldD protein, part of TldE/TldD proteolytic complex CBSS-354.1.peg.2917;
Putative TldE-TldD proteolytic complex
fig|6666666.229917.peg.1279 CDS AJMH02000023.1 27818 33589 2 + 5772 FIG00904191: hypothetical protein - none -
fig|6666666.229917.peg.1280 CDS AJMH02000023.1 33722 34771 2 + 1050 Putative membrane protein YeiH - none -
fig|6666666.229917.peg.1281 CDS AJMH02000023.1 34891 37248 1 + 2358 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) DNA uptake cluster;
Peptidoglycan Biosynthesis;
Type IV pilus
fig|6666666.229917.peg.1282 CDS AJMH02000023.1 38032 37358 -1 - 675 3-keto-L-gulonate 6-phosphate decarboxylase L-ascorbate utilization (and related gene clusters)
fig|6666666.229917.peg.1283 CDS AJMH02000023.1 38570 38109 -2 - 462 Ascorbate-specific PTS system, EIIA component (EC 2.7.1.-) L-ascorbate utilization (and related gene clusters)
fig|6666666.229917.peg.1284 CDS AJMH02000023.1 40397 38625 -2 - 1773 Ascorbate-specific PTS system, EIIC component L-ascorbate utilization (and related gene clusters)
fig|6666666.229917.peg.1285 CDS AJMH02000023.1 40745 41836 2 + 1092 Probable L-ascorbate-6-phosphate lactonase UlaG (EC 3.1.1.-) (L-ascorbate utilization protein G) L-ascorbate utilization (and related gene clusters)
fig|6666666.229917.peg.1286 CDS AJMH02000023.1 41928 42677 3 + 750 Ascorbate utilization transcriptional regulator UlaR, HTH-type L-ascorbate utilization (and related gene clusters)
fig|6666666.229917.peg.1287 CDS AJMH02000023.1 42718 43578 1 + 861 L-xylulose 5-phosphate 3-epimerase (EC 5.1.3.-) L-ascorbate utilization (and related gene clusters)
fig|6666666.229917.peg.1288 CDS AJMH02000023.1 43572 44267 3 + 696 L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) L-ascorbate utilization (and related gene clusters)
fig|6666666.229917.peg.1289 CDS AJMH02000023.1 45564 44350 -3 - 1215 Tyrosine-specific transport protein - none -
fig|6666666.229917.peg.1290 CDS AJMH02000023.1 45826 46053 1 + 228 Beta-galactosidase (EC 3.2.1.23) Galactosylceramide and Sulfatide metabolism;
Lactose and Galactose Uptake and Utilization;
Lactose utilization
fig|6666666.229917.peg.1291 CDS AJMH02000023.1 46699 47433 1 + 735 Oxygen-insensitive NADPH nitroreductase (EC 1.-.-.-) - none -
fig|6666666.229917.peg.1292 CDS AJMH02000023.1 47524 48357 1 + 834 Ribosomal protein S6 glutaminyl transferase Ribosome biogenesis bacterial
fig|6666666.229917.peg.1293 CDS AJMH02000023.1 48410 48601 2 + 192 hypothetical protein - none -
fig|6666666.229917.peg.1294 CDS AJMH02000023.1 49258 48653 -1 - 606 FIG026291: Hypothetical periplasmic protein - none -
fig|6666666.229917.peg.1295 CDS AJMH02000023.1 50756 49362 -2 - 1395 Fumarate hydratase class II (EC 4.2.1.2) TCA Cycle
fig|6666666.229917.peg.1296 CDS AJMH02000023.1 50966 51415 2 + 450 DNA polymerase III chi subunit (EC 2.7.7.7) CBSS-208964.1.peg.3826
fig|6666666.229917.peg.1297 CDS AJMH02000023.1 51454 51582 1 + 129 RNA-binding domain protein - none -
fig|6666666.229917.peg.1298 CDS AJMH02000023.1 51610 51738 1 + 129 RNA-binding domain protein - none -
fig|6666666.229917.peg.1299 CDS AJMH02000023.1 52457 55321 2 + 2865 Valyl-tRNA synthetase (EC 6.1.1.9) CBSS-208964.1.peg.3826;
tRNA aminoacylation, Val
fig|6666666.229917.peg.1300 CDS AJMH02000023.1 55388 56281 2 + 894 hypothetical protein - none -
fig|6666666.229917.peg.1301 CDS AJMH02000023.1 56400 56278 -3 - 123 HipA protein Persister Cells
fig|6666666.229917.peg.1302 CDS AJMH02000023.1 56516 56400 -2 - 117 HipA protein Persister Cells
fig|6666666.229917.peg.1303 CDS AJMH02000023.1 56848 56510 -1 - 339 HipA protein Persister Cells
fig|6666666.229917.peg.1304 CDS AJMH02000023.1 57179 56898 -2 - 282 HipB protein Persister Cells
fig|6666666.229917.peg.1305 CDS AJMH02000023.1 58837 57323 -1 - 1515 Inner membrane component of tripartite multidrug resistance system Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria
fig|6666666.229917.peg.1306 CDS AJMH02000023.1 60010 58850 -1 - 1161 Membrane fusion component of tripartite multidrug resistance system Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria
fig|6666666.229917.peg.1307 CDS AJMH02000023.1 60219 60701 3 + 483 Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1) Oxidative stress;
Oxidative stress;
Oxidative stress
fig|6666666.229917.peg.1308 CDS AJMH02000023.1 62799 60820 -3 - 1980 Exoribonuclease II (EC 3.1.13.1) RNA processing and degradation, bacterial
fig|6666666.229917.peg.1309 CDS AJMH02000023.1 63660 62872 -3 - 789 Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9) Fatty Acid Biosynthesis FASII
fig|6666666.229917.peg.1310 CDS AJMH02000023.1 64506 63751 -3 - 756 FIG137478: Hypothetical protein YbgI - none -
fig|6666666.229917.peg.1311 CDS AJMH02000023.1 65405 64731 -2 - 675 Queuosine Biosynthesis QueE Radical SAM Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229917.peg.1312 CDS AJMH02000023.1 65791 65366 -1 - 426 6-carboxytetrahydropterin synthase (EC 4.1.2.50) @ Queuosine biosynthesis QueD, PTPS-I Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229917.peg.1313 CDS AJMH02000023.1 67489 65981 -1 - 1509 Lysyl-tRNA synthetase (class II) (EC 6.1.1.6) tRNA aminoacylation, Lys
fig|6666666.229917.peg.1314 CDS AJMH02000023.1 68448 67546 -3 - 903 Peptide chain release factor 2; programmed frameshift-containing Programmed frameshift;
Programmed frameshift;
Translation termination factors bacterial
fig|6666666.229917.peg.1315 CDS AJMH02000023.1 68728 68567 -1 - 162 hypothetical protein - none -
fig|6666666.229917.peg.1316 CDS AJMH02000023.1 68812 69495 1 + 684 Thiol:disulfide interchange protein DsbC Periplasmic disulfide interchange
fig|6666666.229917.peg.1317 CDS AJMH02000023.1 69508 71229 1 + 1722 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) DNA Repair Base Excision;
DNA repair, bacterial RecFOR pathway
fig|6666666.229917.peg.1318 CDS AJMH02000023.1 71262 71909 3 + 648 Thiol-disulfide isomerase and thioredoxins - none -
fig|6666666.229917.peg.1319 CDS AJMH02000023.1 71926 72618 1 + 693 5@1-methylthioadenosine nucleosidase (EC 3.2.2.16) / S-adenosylhomocysteine nucleosidase (EC 3.2.2.9) Adenosyl nucleosidases;
Adenosyl nucleosidases;
Methionine Biosynthesis;
Methionine Degradation;
Polyamine Metabolism
fig|6666666.229917.peg.1320 CDS AJMH02000023.1 72797 73492 2 + 696 Additional periplasmic component NikK of nickel ECF transporter Transport of Nickel and Cobalt
fig|6666666.229917.peg.1321 CDS AJMH02000023.1 73499 74002 2 + 504 Additional component NikL of nickel ECF transporter Transport of Nickel and Cobalt
fig|6666666.229917.peg.1322 CDS AJMH02000023.1 74002 74655 1 + 654 Substrate-specific component NikM of nickel ECF transporter ECF class transporters;
Transport of Nickel and Cobalt
fig|6666666.229917.peg.1323 CDS AJMH02000023.1 74652 75347 3 + 696 Transmembrane component NikQ of energizing module of nickel ECF transporter ECF class transporters;
Transport of Nickel and Cobalt
fig|6666666.229917.peg.1324 CDS AJMH02000024.1 650 306 -2 - 345 hypothetical protein - none -
fig|6666666.229917.peg.1325 CDS AJMH02000024.1 2210 684 -2 - 1527 Coupling protein VirD4, ATPase required for T-DNA transfer - none -
fig|6666666.229917.peg.1326 CDS AJMH02000024.1 3454 2423 -1 - 1032 ATPase provides energy for both assembly of type IV secretion complex and secretion of T-DNA complex (VirB11) - none -
fig|6666666.229917.peg.1327 CDS AJMH02000024.1 4024 3467 -1 - 558 Inner membrane protein forms channel for type IV secretion of T-DNA complex (VirB10) - none -
fig|6666666.229917.peg.1328 CDS AJMH02000025.1 418 275 -1 - 144 hypothetical protein - none -
fig|6666666.229917.peg.1329 CDS AJMH02000025.1 1488 487 -3 - 1002 Inner membrane protein of type IV secretion of T-DNA complex, VirB6 - none -
fig|6666666.229917.peg.1330 CDS AJMH02000025.1 1725 1498 -3 - 228 hypothetical protein - none -
fig|6666666.229917.peg.1331 CDS AJMH02000025.1 2470 1739 -1 - 732 Minor pilin of type IV secretion complex, VirB5 - none -
fig|6666666.229917.peg.1332 CDS AJMH02000025.1 5030 2481 -2 - 2550 ATPase provides energy for both assembly of type IV secretion complex and secretion of T-DNA complex (VirB4) - none -
fig|6666666.229917.peg.1333 CDS AJMH02000026.1 284 655 2 + 372 LSU ribosomal protein L14p (L23e) Ribosome LSU bacterial
fig|6666666.229917.peg.1334 CDS AJMH02000026.1 666 977 3 + 312 LSU ribosomal protein L24p (L26e) Ribosome LSU bacterial
fig|6666666.229917.peg.1335 CDS AJMH02000026.1 1106 1534 2 + 429 LSU ribosomal protein L5p (L11e) Ribosome LSU bacterial
fig|6666666.229917.peg.1336 CDS AJMH02000026.1 1547 1852 2 + 306 SSU ribosomal protein S14p (S29e) @ SSU ribosomal protein S14p (S29e), zinc-independent Ribosome SSU bacterial;
Ribosome SSU bacterial
fig|6666666.229917.peg.1337 CDS AJMH02000026.1 1889 2281 2 + 393 SSU ribosomal protein S8p (S15Ae) Ribosome SSU bacterial
fig|6666666.229917.peg.1338 CDS AJMH02000026.1 2297 2830 2 + 534 LSU ribosomal protein L6p (L9e) Ribosome LSU bacterial
fig|6666666.229917.peg.1339 CDS AJMH02000026.1 2844 3197 3 + 354 LSU ribosomal protein L18p (L5e) Ribosome LSU bacterial
fig|6666666.229917.peg.1340 CDS AJMH02000026.1 3213 3713 3 + 501 SSU ribosomal protein S5p (S2e) Ribosome SSU bacterial
fig|6666666.229917.peg.1341 CDS AJMH02000026.1 3903 4337 3 + 435 LSU ribosomal protein L15p (L27Ae) Ribosome LSU bacterial
fig|6666666.229917.peg.1342 CDS AJMH02000026.1 4341 5666 3 + 1326 Preprotein translocase secY subunit (TC 3.A.5.1.1) - none -
fig|6666666.229917.peg.1343 CDS AJMH02000026.1 5692 5805 1 + 114 LSU ribosomal protein L36p Ribosome LSU bacterial
fig|6666666.229917.peg.1344 CDS AJMH02000026.1 5947 6303 1 + 357 SSU ribosomal protein S13p (S18e) Ribosome SSU bacterial
fig|6666666.229917.peg.1345 CDS AJMH02000026.1 6319 6708 1 + 390 SSU ribosomal protein S11p (S14e) Ribosome SSU bacterial
fig|6666666.229917.peg.1346 CDS AJMH02000026.1 6900 7358 3 + 459 SSU ribosomal protein S4p (S9e) Ribosome SSU bacterial
fig|6666666.229917.peg.1347 CDS AJMH02000026.1 7387 8376 1 + 990 DNA-directed RNA polymerase alpha subunit (EC 2.7.7.6) RNA polymerase bacterial
fig|6666666.229917.peg.1348 CDS AJMH02000026.1 8418 8807 3 + 390 LSU ribosomal protein L17p Ribosome LSU bacterial
fig|6666666.229917.peg.1349 CDS AJMH02000028.1 2251 779 -1 - 1473 Xylulose kinase (EC 2.7.1.17) Xylose utilization
fig|6666666.229917.peg.1350 CDS AJMH02000028.1 3620 2301 -2 - 1320 Xylose isomerase (EC 5.3.1.5) Xylose utilization
fig|6666666.229917.peg.1351 CDS AJMH02000028.1 3878 4876 2 + 999 Xylose ABC transporter, periplasmic xylose-binding protein XylF Xylose utilization
fig|6666666.229917.peg.1352 CDS AJMH02000028.1 4936 5691 1 + 756 D-xylose transport ATP-binding protein XylG Xylose utilization
fig|6666666.229917.peg.1353 CDS AJMH02000028.1 5787 5668 -3 - 120 hypothetical protein - none -
fig|6666666.229917.peg.1354 CDS AJMH02000028.1 5839 6447 1 + 609 D-xylose transport ATP-binding protein XylG Xylose utilization
fig|6666666.229917.peg.1355 CDS AJMH02000028.1 6451 7578 1 + 1128 Xylose ABC transporter, permease protein XylH Xylose utilization
fig|6666666.229917.peg.1356 CDS AJMH02000028.1 7667 8863 2 + 1197 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229917.peg.1357 CDS AJMH02000028.1 8916 10262 3 + 1347 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229917.peg.1358 CDS AJMH02000028.1 10388 10266 -2 - 123 hypothetical protein - none -
fig|6666666.229917.peg.1359 CDS AJMH02000028.1 10377 11549 3 + 1173 Xylose activator XylR (AraC family) Xylose utilization
fig|6666666.229917.peg.1360 CDS AJMH02000028.1 13033 11576 -1 - 1458 Permeases of the major facilitator superfamily - none -
fig|6666666.229917.peg.1361 CDS AJMH02000028.1 13170 13054 -3 - 117 hypothetical protein - none -
fig|6666666.229917.peg.1362 CDS AJMH02000028.1 13319 14317 2 + 999 PTS system, mannose-specific IIA component (EC 2.7.1.69) / PTS system, mannose-specific IIB component (EC 2.7.1.69) Mannose Metabolism;
Mannose Metabolism;
Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229917.peg.1363 CDS AJMH02000028.1 14329 15132 1 + 804 PTS system, mannose-specific IIC component - none -
fig|6666666.229917.peg.1364 CDS AJMH02000028.1 15148 15984 1 + 837 PTS system, mannose-specific IID component - none -
fig|6666666.229917.peg.1365 CDS AJMH02000028.1 17769 16165 -3 - 1605 Type I restriction-modification system, DNA-methyltransferase subunit M (EC 2.1.1.72) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229917.peg.1366 CDS AJMH02000028.1 19000 17870 -1 - 1131 Type I restriction-modification system, specificity subunit S (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229917.peg.1367 CDS AJMH02000028.1 20198 19209 -2 - 990 Putative DNA-binding protein in cluster with Type I restriction-modification system Restriction-Modification System
fig|6666666.229917.peg.1368 CDS AJMH02000028.1 21029 20247 -2 - 783 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229917.peg.1369 CDS AJMH02000028.1 23223 21094 -3 - 2130 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229917.peg.1370 CDS AJMH02000028.1 23524 23372 -1 - 153 hypothetical protein - none -
fig|6666666.229917.peg.1371 CDS AJMH02000028.1 23529 24575 3 + 1047 ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1) Polyamine Metabolism
fig|6666666.229917.peg.1372 CDS AJMH02000028.1 25064 24636 -2 - 429 ATP synthase epsilon chain (EC 3.6.3.14) - none -
fig|6666666.229917.peg.1373 CDS AJMH02000028.1 26479 25106 -1 - 1374 ATP synthase beta chain (EC 3.6.3.14) - none -
fig|6666666.229917.peg.1374 CDS AJMH02000028.1 27365 26496 -2 - 870 ATP synthase gamma chain (EC 3.6.3.14) - none -
fig|6666666.229917.peg.1375 CDS AJMH02000028.1 28922 27381 -2 - 1542 ATP synthase alpha chain (EC 3.6.3.14) - none -
fig|6666666.229917.peg.1376 CDS AJMH02000028.1 29483 28935 -2 - 549 ATP synthase delta chain (EC 3.6.3.14) - none -
fig|6666666.229917.peg.1377 CDS AJMH02000028.1 29967 29497 -3 - 471 ATP synthase F0 sector subunit b - none -
fig|6666666.229917.peg.1378 CDS AJMH02000028.1 30271 30017 -1 - 255 ATP synthase F0 sector subunit c (EC 3.6.3.14) - none -
fig|6666666.229917.peg.1379 CDS AJMH02000028.1 31113 30325 -3 - 789 ATP synthase F0 sector subunit a - none -
fig|6666666.229917.peg.1380 CDS AJMH02000028.1 31515 31138 -3 - 378 FIG048548: ATP synthase protein I2 - none -
fig|6666666.229917.peg.1381 CDS AJMH02000028.1 32310 31627 -3 - 684 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB Cell Division Subsystem including YidCD;
RNA methylation;
RNA modification and chromosome partitioning cluster
fig|6666666.229917.peg.1382 CDS AJMH02000028.1 32665 32303 -1 - 363 Redox-sensing transcriptional regulator QorR NADPH:quinone oxidoreductase 2
fig|6666666.229917.peg.1383 CDS AJMH02000028.1 32916 33674 3 + 759 NADPH:quinone oxidoreductase 2 NADPH:quinone oxidoreductase 2
fig|6666666.229917.peg.1384 CDS AJMH02000028.1 35835 33946 -3 - 1890 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA Cell Division Subsystem including YidCD;
RNA modification and chromosome partitioning cluster;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229917.peg.1385 CDS AJMH02000028.1 36721 36278 -1 - 444 Flavoprotein MioC Flavodoxin
fig|6666666.229917.peg.1386 CDS AJMH02000028.1 36996 36778 -3 - 219 FIG074102: hypothetical protein - none -
fig|6666666.229917.peg.1387 CDS AJMH02000028.1 37192 38205 1 + 1014 Fructose-1,6-bisphosphatase, GlpX type (EC 3.1.3.11) Glycolysis and Gluconeogenesis
fig|6666666.229917.peg.1388 CDS AJMH02000028.1 39643 38846 -1 - 798 Serine acetyltransferase (EC 2.3.1.30) Cysteine Biosynthesis;
Methionine Biosynthesis
fig|6666666.229917.peg.1389 CDS AJMH02000028.1 40659 39646 -3 - 1014 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) Glutaredoxin 3 containing cluster;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229917.peg.1390 CDS AJMH02000028.1 41249 40737 -2 - 513 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) Glutaredoxin 3 containing cluster
fig|6666666.229917.peg.1391 CDS AJMH02000028.1 41687 41265 -2 - 423 FIG136845: Rhodanese-related sulfurtransferase Glutaredoxin 3 containing cluster
fig|6666666.229917.peg.1392 CDS AJMH02000028.1 42033 43355 3 + 1323 Anaerobic C4-dicarboxylate membrane transporter DcuA - none -
fig|6666666.229917.peg.1393 CDS AJMH02000028.1 43523 45271 2 + 1749 Transport ATP-binding protein CydD Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229917.peg.1394 CDS AJMH02000028.1 45288 46922 3 + 1635 ABC transporter ATP-binding protein - none -
fig|6666666.229917.peg.1395 CDS AJMH02000028.1 47654 47034 -2 - 621 Unsaturated fatty acid biosythesis repressor FabR, TetR family - none -
fig|6666666.229917.peg.1396 CDS AJMH02000028.1 48565 47666 -1 - 900 Hydrogen peroxide-inducible genes activator LysR-family proteins in Escherichia coli;
LysR-family proteins in Salmonella enterica Typhimurium;
Oxidative stress;
Thioredoxin-disulfide reductase
fig|6666666.229917.peg.1397 CDS AJMH02000028.1 48724 49452 1 + 729 Peroxiredoxin family protein/glutaredoxin - none -
fig|6666666.229917.peg.1398 CDS AJMH02000028.1 49728 49513 -3 - 216 Protein SlyX - none -
fig|6666666.229917.peg.1399 CDS AJMH02000028.1 49823 50548 2 + 726 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase;
Potassium homeostasis
fig|6666666.229917.peg.1400 CDS AJMH02000028.1 50628 51296 3 + 669 YheO-like PAS domain - none -
fig|6666666.229917.peg.1401 CDS AJMH02000028.1 51300 51677 3 + 378 tRNA 5-methylaminomethyl-2-thiouridine synthase TusD CBSS-326442.4.peg.1852;
Sulfite reduction-associated complex DsrMKJOP and co-clustering genes;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.229917.peg.1402 CDS AJMH02000028.1 51674 52036 2 + 363 tRNA 5-methylaminomethyl-2-thiouridine synthase TusC CBSS-326442.4.peg.1852;
Sulfite reduction-associated complex DsrMKJOP and co-clustering genes;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.229917.peg.1403 CDS AJMH02000028.1 52039 52326 1 + 288 tRNA 5-methylaminomethyl-2-thiouridine synthase TusB Sulfite reduction-associated complex DsrMKJOP and co-clustering genes;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.229917.peg.1404 CDS AJMH02000028.1 53098 52331 -1 - 768 ABC-type polar amino acid transport system, ATPase component CBSS-326442.4.peg.1852
fig|6666666.229917.peg.1405 CDS AJMH02000028.1 53791 53108 -1 - 684 ABC-type amino acid transport system, permease component - none -
fig|6666666.229917.peg.1406 CDS AJMH02000028.1 54593 53814 -2 - 780 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain - none -
fig|6666666.229917.peg.1407 CDS AJMH02000028.1 56014 54719 -1 - 1296 Glycine/D-amino acid oxidases (deaminating) - none -
fig|6666666.229917.peg.1408 CDS AJMH02000028.1 57503 56139 -2 - 1365 lipoprotein, putative - none -
fig|6666666.229917.peg.1409 CDS AJMH02000028.1 60362 59448 -2 - 915 N-acetylmuramic acid 6-phosphate etherase - none -
fig|6666666.229917.peg.1410 CDS AJMH02000028.1 61489 60359 -1 - 1131 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) Recycling of Peptidoglycan Amino Sugars
fig|6666666.229917.peg.1411 CDS AJMH02000028.1 61575 62945 3 + 1371 N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23) / Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157) Peptidoglycan Biosynthesis;
Peptidoglycan Biosynthesis;
Sialic Acid Metabolism;
Sialic Acid Metabolism;
Transcription repair cluster;
Transcription repair cluster;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229917.peg.1412 CDS AJMH02000028.1 62979 63110 3 + 132 hypothetical protein - none -
fig|6666666.229917.peg.1413 CDS AJMH02000028.1 64190 63099 -2 - 1092 Putative exported protein precursor - none -
fig|6666666.229917.peg.1414 CDS AJMH02000028.1 65077 64328 -1 - 750 Deoxyribose operon repressor, DeoR family Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.229917.peg.1415 CDS AJMH02000028.1 65776 65105 -1 - 672 Deoxyribose-phosphate aldolase (EC 4.1.2.4) Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.229917.peg.1416 CDS AJMH02000028.1 66634 66263 -1 - 372 Mobile element protein - none -
fig|6666666.229917.peg.1417 CDS AJMH02000028.1 67322 66765 -2 - 558 Integrase - none -
fig|6666666.229917.peg.1418 CDS AJMH02000028.1 68352 68122 -3 - 231 hypothetical protein - none -
fig|6666666.229917.peg.1419 CDS AJMH02000028.1 68591 68349 -2 - 243 Putative membrane protein precursor - none -
fig|6666666.229917.peg.1420 CDS AJMH02000028.1 71084 68637 -2 - 2448 Putative uncharacterized protein ydbH - none -
fig|6666666.229917.peg.1421 CDS AJMH02000028.1 71807 71190 -2 - 618 Multiple antibiotic resistance protein marC - none -
fig|6666666.229917.peg.1422 CDS AJMH02000028.1 71888 73339 2 + 1452 Glutathione-regulated potassium-efflux system ATP-binding protein Potassium homeostasis
fig|6666666.229917.peg.1423 CDS AJMH02000028.1 73311 73775 3 + 465 Glutathione-regulated potassium-efflux system ATP-binding protein Potassium homeostasis
fig|6666666.229917.peg.1424 CDS AJMH02000028.1 73923 74981 3 + 1059 RecA protein DNA repair, bacterial;
DNA repair, bacterial RecFOR pathway;
DNA repair system including RecA, MutS and a hypothetical protein;
RecA and RecX
fig|6666666.229917.peg.1425 CDS AJMH02000028.1 75063 75521 3 + 459 Regulatory protein RecX DNA repair system including RecA, MutS and a hypothetical protein;
RecA and RecX
fig|6666666.229917.peg.1426 CDS AJMH02000028.1 75598 75987 1 + 390 Endoribonuclease L-PSP - none -
fig|6666666.229917.peg.1427 CDS AJMH02000028.1 78056 76059 -2 - 1998 Transketolase (EC 2.2.1.1) Pentose phosphate pathway
fig|6666666.229917.peg.1428 CDS AJMH02000028.1 79142 78189 -2 - 954 Transaldolase (EC 2.2.1.2) Fructose utilization;
Pentose phosphate pathway
fig|6666666.229917.peg.1429 CDS AJMH02000029.1 1495 494 -1 - 1002 Inner membrane protein of type IV secretion of T-DNA complex, VirB6 - none -
fig|6666666.229917.peg.1430 CDS AJMH02000029.1 1731 1507 -3 - 225 hypothetical protein - none -
fig|6666666.229917.peg.1431 CDS AJMH02000029.1 2079 1753 -3 - 327 hypothetical protein - none -
fig|6666666.229917.peg.1432 CDS AJMH02000029.1 2528 2199 -2 - 330 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes - none -
fig|6666666.229917.peg.1433 CDS AJMH02000029.1 2882 3001 2 + 120 Haemophilus-specific protein, uncharacterized - none -
fig|6666666.229917.peg.1434 CDS AJMH02000029.1 3315 3494 3 + 180 hypothetical protein - none -
fig|6666666.229917.peg.1435 CDS AJMH02000029.1 4065 4319 3 + 255 hypothetical protein - none -
fig|6666666.229917.peg.1436 CDS AJMH02000029.1 4322 4666 2 + 345 Programmed cell death toxin MazF - none -
fig|6666666.229917.peg.1437 CDS AJMH02000029.1 5235 5903 3 + 669 Cytolethal distending toxin subunit A Cytolethal distending toxin of Campylobacter jejuni;
Cytolethal distending toxins
fig|6666666.229917.peg.1438 CDS AJMH02000029.1 5918 6769 2 + 852 Cytolethal distending toxin subunit B Cytolethal distending toxin of Campylobacter jejuni;
Cytolethal distending toxins
fig|6666666.229917.peg.1439 CDS AJMH02000029.1 6780 7340 3 + 561 Cytolethal distending toxin subunit C Cytolethal distending toxin of Campylobacter jejuni;
Cytolethal distending toxins
fig|6666666.229917.peg.1440 CDS AJMH02000029.1 9137 8865 -2 - 273 FIG141751: hypothetical protein in PFGI-1-like cluster - none -
fig|6666666.229917.peg.1441 CDS AJMH02000029.1 9927 9151 -3 - 777 Chromosome partitioning ATPase in PFGI-1-like cluster, ParA-like - none -
fig|6666666.229917.peg.1442 CDS AJMH02000029.1 11011 10454 -1 - 558 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229917.peg.1443 CDS AJMH02000029.1 11266 12456 1 + 1191 Cystathionine beta-lyase (EC 4.4.1.8) Methionine Biosynthesis
fig|6666666.229917.peg.1444 CDS AJMH02000029.1 12670 13722 1 + 1053 Outer membrane protein P2 precursor (OMP P2) - none -
fig|6666666.229917.peg.1445 CDS AJMH02000029.1 13866 14123 3 + 258 hypothetical protein - none -
fig|6666666.229917.peg.1446 CDS AJMH02000029.1 14123 14470 2 + 348 Programmed cell death toxin ChpB - none -
fig|6666666.229917.peg.1447 CDS AJMH02000029.1 15675 14548 -3 - 1128 Chaperone protein DnaJ GroEL GroES;
Heat shock dnaK gene cluster extended;
Protein chaperones
fig|6666666.229917.peg.1448 CDS AJMH02000029.1 18012 16111 -3 - 1902 Chaperone protein DnaK GroEL GroES;
Heat shock dnaK gene cluster extended;
Protein chaperones
fig|6666666.229917.peg.1449 CDS AJMH02000029.1 18298 19731 1 + 1434 Putative GTP-binding protein YdgA - none -
fig|6666666.229917.peg.1450 CDS AJMH02000029.1 21824 20091 -2 - 1734 Arginyl-tRNA synthetase (EC 6.1.1.19) tRNA aminoacylation, Arg
fig|6666666.229917.peg.1451 CDS AJMH02000029.1 21921 22508 3 + 588 Protein yecM - none -
fig|6666666.229917.peg.1452 CDS AJMH02000029.1 22550 23005 2 + 456 Outer membrane lipoprotein - none -
fig|6666666.229917.peg.1453 CDS AJMH02000029.1 23145 24227 3 + 1083 Peptide chain release factor 1 A Gammaproteobacteria Cluster Relating to Translation;
CBSS-216600.3.peg.802;
Translation termination factors bacterial;
YrdC-YciO-Sua5 protein family
fig|6666666.229917.peg.1454 CDS AJMH02000029.1 24267 25166 3 + 900 Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2 A Gammaproteobacteria Cluster Relating to Translation;
CBSS-216600.3.peg.802;
Translation termination factors bacterial;
YrdC-YciO-Sua5 protein family
fig|6666666.229917.peg.1455 CDS AJMH02000029.1 25176 26030 3 + 855 2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase (EC 2.5.1.55) A Gammaproteobacteria Cluster Relating to Translation;
KDO2-Lipid A biosynthesis
fig|6666666.229917.peg.1456 CDS AJMH02000029.1 26210 26719 2 + 510 probable lipoprotein NlpC - none -
fig|6666666.229917.peg.1457 CDS AJMH02000029.1 27367 27116 -1 - 252 Protein YcgL CBSS-243277.1.peg.4359
fig|6666666.229917.peg.1458 CDS AJMH02000029.1 27451 28113 1 + 663 Septum site-determining protein MinC Bacterial Cell Division;
Bacterial Cytoskeleton;
Septum site-determining cluster Min
fig|6666666.229917.peg.1459 CDS AJMH02000029.1 28680 28135 -3 - 546 FIG00696317: hypothetical protein - none -
fig|6666666.229917.peg.1460 CDS AJMH02000029.1 29371 28904 -1 - 468 Phosphohistidine phosphatase SixA - none -
fig|6666666.229917.peg.1461 CDS AJMH02000029.1 30721 29384 -1 - 1338 Phosphoglucosamine mutase (EC 5.4.2.10) Sialic Acid Metabolism;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229917.peg.1462 CDS AJMH02000029.1 32644 31703 -1 - 942 DNA polymerase IV (EC 2.7.7.7) DNA repair, bacterial
fig|6666666.229917.peg.1463 CDS AJMH02000029.1 33312 32668 -3 - 645 Mobile element protein - none -
fig|6666666.229917.peg.1464 CDS AJMH02000029.1 33521 33814 2 + 294 hypothetical protein - none -
fig|6666666.229917.peg.1465 CDS AJMH02000029.1 34224 34367 3 + 144 hypothetical protein - none -
fig|6666666.229917.peg.1466 CDS AJMH02000029.1 35335 35589 1 + 255 Mobile element protein - none -
fig|6666666.229917.peg.1467 CDS AJMH02000029.1 37261 35795 -1 - 1467 Inosine-5@1-monophosphate dehydrogenase (EC 1.1.1.205) Purine conversions;
Purine salvage cluster
fig|6666666.229917.peg.1468 CDS AJMH02000029.1 37403 38335 2 + 933 Biotin operon repressor / Biotin-protein ligase (EC 6.3.4.15) Biotin biosynthesis;
Biotin biosynthesis;
Biotin synthesis cluster;
Biotin synthesis cluster
fig|6666666.229917.peg.1469 CDS AJMH02000029.1 38422 38625 1 + 204 Osmotically inducible lipoprotein B precursor Osmotic stress cluster
fig|6666666.229917.peg.1470 CDS AJMH02000030.1 352 95 -1 - 258 SSU ribosomal protein S17p (S11e) Ribosome SSU bacterial
fig|6666666.229917.peg.1471 CDS AJMH02000030.1 543 352 -3 - 192 LSU ribosomal protein L29p (L35e) Ribosome LSU bacterial
fig|6666666.229917.peg.1472 CDS AJMH02000030.1 953 543 -2 - 411 LSU ribosomal protein L16p (L10e) Ribosome LSU bacterial
fig|6666666.229917.peg.1473 CDS AJMH02000030.1 1674 967 -3 - 708 SSU ribosomal protein S3p (S3e) Ribosome SSU bacterial
fig|6666666.229917.peg.1474 CDS AJMH02000030.1 2023 1691 -1 - 333 LSU ribosomal protein L22p (L17e) Ribosome LSU bacterial
fig|6666666.229917.peg.1475 CDS AJMH02000030.1 2180 2034 -2 - 147 SSU ribosomal protein S19p (S15e) Ribosome SSU bacterial
fig|6666666.229917.peg.1476 CDS AJMH02000030.1 3156 2335 -3 - 822 LSU ribosomal protein L2p (L8e) Ribosome LSU bacterial
fig|6666666.229917.peg.1477 CDS AJMH02000030.1 3479 3177 -2 - 303 LSU ribosomal protein L23p (L23Ae) Ribosome LSU bacterial
fig|6666666.229917.peg.1478 CDS AJMH02000030.1 4078 3476 -1 - 603 LSU ribosomal protein L4p (L1e) Ribosome LSU bacterial
fig|6666666.229917.peg.1479 CDS AJMH02000030.1 4720 4094 -1 - 627 LSU ribosomal protein L3p (L3e) Ribosome LSU bacterial
fig|6666666.229917.peg.1480 CDS AJMH02000030.1 5048 4737 -2 - 312 SSU ribosomal protein S10p (S20e) Ribosome SSU bacterial
fig|6666666.229917.peg.1481 CDS AJMH02000030.1 6194 5298 -2 - 897 Transcriptional regulators, LysR family - none -
fig|6666666.229917.peg.1482 CDS AJMH02000030.1 6531 7121 3 + 591 Acetyl-CoA:acetoacetyl-CoA transferase, alpha subunit (EC 2.8.3.8) - none -
fig|6666666.229917.peg.1483 CDS AJMH02000030.1 7133 7798 2 + 666 Acetyl-CoA:acetoacetyl-CoA transferase, beta subunit (EC 2.8.3.8) - none -
fig|6666666.229917.peg.1484 CDS AJMH02000030.1 7801 9144 1 + 1344 Short chain fatty acids transporter Polyhydroxybutyrate metabolism
fig|6666666.229917.peg.1485 CDS AJMH02000030.1 9162 10343 3 + 1182 Acetyl-CoA acetyltransferase (EC 2.3.1.9) Butanol Biosynthesis;
Isoprenoid Biosynthesis;
Polyhydroxybutyrate metabolism;
Serine-glyoxylate cycle
fig|6666666.229917.peg.1486 CDS AJMH02000030.1 10908 10441 -3 - 468 Transcriptional regulator, AsnC family - none -
fig|6666666.229917.peg.1487 CDS AJMH02000030.1 12384 10999 -3 - 1386 Arginine/ornithine antiporter ArcD Arginine Deiminase Pathway;
Arginine and Ornithine Degradation;
Polyamine Metabolism
fig|6666666.229917.peg.1488 CDS AJMH02000030.1 13577 12645 -2 - 933 Carbamate kinase (EC 2.7.2.2) Arginine Deiminase Pathway;
Arginine and Ornithine Degradation;
Polyamine Metabolism
fig|6666666.229917.peg.1489 CDS AJMH02000030.1 14591 13587 -2 - 1005 Ornithine carbamoyltransferase (EC 2.1.3.3) Arginine Deiminase Pathway;
Arginine and Ornithine Degradation
fig|6666666.229917.peg.1490 CDS AJMH02000030.1 14740 14928 1 + 189 hypothetical protein - none -
fig|6666666.229917.peg.1491 CDS AJMH02000030.1 16296 17084 3 + 789 tRNA dihydrouridine synthase A - none -
fig|6666666.229917.peg.1492 CDS AJMH02000030.1 18132 17140 -3 - 993 Aspartate--ammonia ligase (EC 6.3.1.1) CBSS-262728.1.peg.1737;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229917.peg.1493 CDS AJMH02000030.1 18298 18750 1 + 453 Regulatory protein AsnC CBSS-262728.1.peg.1737
fig|6666666.229917.peg.1494 CDS AJMH02000030.1 18784 19542 1 + 759 Uridine phosphorylase (EC 2.4.2.3) pyrimidine conversions
fig|6666666.229917.peg.1495 CDS AJMH02000030.1 20740 19679 -1 - 1062 Putative permease PerM (= YfgO) - none -
fig|6666666.229917.peg.1496 CDS AJMH02000030.1 20814 21164 3 + 351 Arsenate reductase (EC 1.20.4.1) Anaerobic respiratory reductases;
Arsenic resistance;
Transcription repair cluster
fig|6666666.229917.peg.1497 CDS AJMH02000030.1 21630 21268 -3 - 363 FIG00696564: hypothetical protein - none -
fig|6666666.229917.peg.1498 CDS AJMH02000030.1 21865 21581 -1 - 285 hypothetical protein - none -
fig|6666666.229917.peg.1499 CDS AJMH02000030.1 22074 23405 3 + 1332 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase Methylthiotransferases;
Ribosomal protein S12p Asp methylthiotransferase
fig|6666666.229917.peg.1500 CDS AJMH02000030.1 23440 23934 1 + 495 Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48) LMPTP YfkJ cluster;
Protein deglycation
fig|6666666.229917.peg.1501 CDS AJMH02000030.1 24061 24279 1 + 219 hypothetical protein - none -
fig|6666666.229917.peg.1502 CDS AJMH02000030.1 24947 24351 -2 - 597 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) G3E family of P-loop GTPases (metallocenter biosynthesis);
Peptidyl-prolyl cis-trans isomerase;
Potassium homeostasis
fig|6666666.229917.peg.1503 CDS AJMH02000030.1 25761 25042 -3 - 720 probable periplasmic protein NMA1059 - none -
fig|6666666.229917.peg.1504 CDS AJMH02000030.1 26246 25812 -2 - 435 Ribonuclease E inhibitor RraB RNA processing and degradation, bacterial
fig|6666666.229917.peg.1505 CDS AJMH02000030.1 26736 26341 -3 - 396 Large-conductance mechanosensitive channel Potassium homeostasis
fig|6666666.229917.peg.1506 CDS AJMH02000030.1 28222 26846 -1 - 1377 Trk system potassium uptake protein TrkA Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Hyperosmotic potassium uptake;
Potassium homeostasis;
Potassium homeostasis
fig|6666666.229917.peg.1507 CDS AJMH02000030.1 29601 28246 -3 - 1356 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) - none -
fig|6666666.229917.peg.1508 CDS AJMH02000030.1 30560 29601 -2 - 960 Methionyl-tRNA formyltransferase (EC 2.1.2.9) Conserved gene cluster associated with Met-tRNA formyltransferase;
Translation initiation factors bacterial
fig|6666666.229917.peg.1509 CDS AJMH02000030.1 31135 30623 -1 - 513 Peptide deformylase (EC 3.5.1.88) Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Translation termination factors bacterial
fig|6666666.229917.peg.1510 CDS AJMH02000031.1 43 159 1 + 117 FIG00697497: hypothetical protein - none -
fig|6666666.229917.peg.1511 CDS AJMH02000031.1 644 763 2 + 120 Two-component system response regulator QseB Orphan regulatory proteins
fig|6666666.229917.peg.1512 CDS AJMH02000031.1 750 2126 3 + 1377 Sensory histidine kinase QseC Orphan regulatory proteins
fig|6666666.229917.peg.1513 CDS AJMH02000031.1 3980 2211 -2 - 1770 Gamma-glutamyltranspeptidase (EC 2.3.2.2) Glutathione: Biosynthesis and gamma-glutamyl cycle
fig|6666666.229917.peg.1514 CDS AJMH02000031.1 4458 4213 -3 - 246 FIG00696862: hypothetical protein - none -
fig|6666666.229917.peg.1515 CDS AJMH02000031.1 5985 4648 -3 - 1338 Argininosuccinate synthase (EC 6.3.4.5) - none -
fig|6666666.229917.peg.1516 CDS AJMH02000031.1 6907 6080 -1 - 828 Nucleoside-diphosphate-sugar epimerases - none -
fig|6666666.229917.peg.1517 CDS AJMH02000031.1 7264 8847 1 + 1584 Peptide chain release factor 3 Translation termination factors bacterial
fig|6666666.229917.peg.1518 CDS AJMH02000031.1 9035 9385 2 + 351 YPPCP.09C homologue - none -
fig|6666666.229917.peg.1519 CDS AJMH02000031.1 9382 9681 1 + 300 Putative transcriptional regulator - none -
fig|6666666.229917.peg.1520 CDS AJMH02000031.1 12650 9717 -2 - 2934 Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42) Ammonia assimilation;
CBSS-316057.3.peg.3521
fig|6666666.229917.peg.1521 CDS AJMH02000031.1 13072 14772 1 + 1701 CRISPR-associated protein Cas3@1@1 CRISPRs
fig|6666666.229917.peg.1522 CDS AJMH02000031.1 14735 15190 2 + 456 CRISPR-associated protein, Csd2/Csh2 family - none -
fig|6666666.229917.peg.1523 CDS AJMH02000031.1 15434 16111 2 + 678 CRISPR-associated RecB family exonuclease Cas4 / CRISPR-associated protein Cas1 CRISPRs
fig|6666666.229917.peg.1524 CDS AJMH02000031.1 16101 17855 3 + 1755 predicted ATP-dependent endonuclease, OLD family - none -
fig|6666666.229917.peg.1525 CDS AJMH02000031.1 17978 18922 2 + 945 CRISPR-associated protein Cas1 CRISPRs
fig|6666666.229917.peg.1526 CDS AJMH02000031.1 18926 19219 2 + 294 CRISPR-associated protein Cas2 CRISPRs
fig|6666666.229917.peg.1527 CDS AJMH02000031.1 20119 20343 1 + 225 Phosphomethylpyrimidine kinase (EC 2.7.4.7) 5-FCL-like protein;
Thiamin biosynthesis
fig|6666666.229917.peg.1528 CDS AJMH02000031.1 20541 21545 3 + 1005 Thiamin ABC transporter, substrate-binding component Thiamin biosynthesis
fig|6666666.229917.peg.1529 CDS AJMH02000031.1 21554 23182 2 + 1629 Thiamin ABC transporter, transmembrane component Thiamin biosynthesis
fig|6666666.229917.peg.1530 CDS AJMH02000031.1 23166 23813 3 + 648 Thiamin ABC transporter, ATPase component / Thiamine transport ATP-binding protein thiQ Thiamin biosynthesis
fig|6666666.229917.peg.1531 CDS AJMH02000031.1 23858 24862 2 + 1005 Biotin synthase (EC 2.8.1.6) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229917.peg.1532 CDS AJMH02000031.1 26342 24960 -2 - 1383 Outer membrane stress sensor protease DegQ, serine protease Periplasmic Stress Response;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229917.peg.1533 CDS AJMH02000031.1 26405 26575 2 + 171 hypothetical protein - none -
fig|6666666.229917.peg.1534 CDS AJMH02000031.1 26943 26533 -3 - 411 probable membrane protein YPO3565 - none -
fig|6666666.229917.peg.1535 CDS AJMH02000031.1 28877 27114 -2 - 1764 FIG00696060: hypothetical protein - none -
fig|6666666.229917.peg.1536 CDS AJMH02000031.1 30173 28968 -2 - 1206 Mannose-6-phosphate isomerase (EC 5.3.1.8) Mannose Metabolism
fig|6666666.229917.peg.1537 CDS AJMH02000031.1 30349 30687 1 + 339 FIG00904093: hypothetical protein - none -
fig|6666666.229917.peg.1538 CDS AJMH02000031.1 30875 32368 2 + 1494 PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69) Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism;
Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229917.peg.1539 CDS AJMH02000031.1 33124 32426 -1 - 699 FIG005121: SAM-dependent methyltransferase (EC 2.1.1.-) CBSS-228410.1.peg.134;
CBSS-342610.3.peg.1536;
Glutathione: Non-redox reactions
fig|6666666.229917.peg.1540 CDS AJMH02000031.1 33145 33846 1 + 702 Hydroxyacylglutathione hydrolase (EC 3.1.2.6) CBSS-228410.1.peg.134;
CBSS-342610.3.peg.1536;
Glutathione: Non-redox reactions;
Methylglyoxal Metabolism
fig|6666666.229917.peg.1541 CDS AJMH02000031.1 34031 35335 2 + 1305 Glutamyl-tRNA reductase (EC 1.2.1.70) A Gammaproteobacteria Cluster Relating to Translation;
Heme and Siroheme Biosynthesis
fig|6666666.229917.peg.1542 CDS AJMH02000031.1 35397 36620 3 + 1224 N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family Chitin and N-acetylglucosamine utilization
fig|6666666.229917.peg.1543 CDS AJMH02000031.1 38001 37357 -3 - 645 Adenylate kinase (EC 2.7.4.3) Purine conversions
fig|6666666.229917.peg.1544 CDS AJMH02000031.1 39423 38134 -3 - 1290 AmpG permease Recycling of Peptidoglycan Amino Acids
fig|6666666.229917.peg.1545 CDS AJMH02000031.1 39771 39430 -3 - 342 [NiFe] hydrogenase nickel incorporation protein HybF NiFe hydrogenase maturation
fig|6666666.229917.peg.1546 CDS AJMH02000031.1 40793 39777 -2 - 1017 UDP-glucose 4-epimerase (EC 5.1.3.2) Lactose and Galactose Uptake and Utilization;
Rhamnose containing glycans
fig|6666666.229917.peg.1547 CDS AJMH02000031.1 40987 41373 1 + 387 Integral membrane protein - none -
fig|6666666.229917.peg.1548 CDS AJMH02000031.1 41498 42829 2 + 1332 Guanine-hypoxanthine permease Purine Utilization
fig|6666666.229917.peg.1549 CDS AJMH02000031.1 44203 42857 -1 - 1347 tRNA(Ile)-lysidine synthetase (EC 6.3.4.19) Cell division-ribosomal stress proteins cluster;
Folate biosynthesis cluster;
tRNA modification Bacteria;
tRNA processing;
tRNAmodification position 34
fig|6666666.229917.peg.1550 CDS AJMH02000031.1 45092 44235 -2 - 858 Pyridoxal kinase (EC 2.7.1.35) Pyridoxin (Vitamin B6) Biosynthesis
fig|6666666.229917.peg.1551 CDS AJMH02000031.1 46108 45155 -1 - 954 Acetyl-coenzyme A carboxyl transferase alpha chain (EC 6.4.1.2) Fatty Acid Biosynthesis FASII
fig|6666666.229917.peg.1552 CDS AJMH02000031.1 47890 48840 1 + 951 hypothetical protein - none -
fig|6666666.229917.peg.1553 CDS AJMH02000031.1 49521 49345 -3 - 177 hypothetical protein - none -
fig|6666666.229917.peg.1554 CDS AJMH02000031.1 49665 49540 -3 - 126 hypothetical protein - none -
fig|6666666.229917.peg.1555 CDS AJMH02000031.1 49919 49722 -2 - 198 Phage protein - none -
fig|6666666.229917.peg.1556 CDS AJMH02000031.1 50661 50005 -3 - 657 Phage Rha protein - none -
fig|6666666.229917.peg.1557 CDS AJMH02000031.1 51329 51105 -2 - 225 hypothetical protein - none -
fig|6666666.229917.peg.1558 CDS AJMH02000031.1 51750 51394 -3 - 357 hypothetical protein - none -
fig|6666666.229917.peg.1559 CDS AJMH02000031.1 52356 52799 3 + 444 Orf33 - none -
fig|6666666.229917.peg.1560 CDS AJMH02000031.1 53068 53364 1 + 297 Phage protein - none -
fig|6666666.229917.peg.1561 CDS AJMH02000031.1 53472 53669 3 + 198 Phage protein - none -
fig|6666666.229917.peg.1562 CDS AJMH02000031.1 53816 53941 2 + 126 hypothetical protein - none -
fig|6666666.229917.peg.1563 CDS AJMH02000031.1 54011 54436 2 + 426 FIG00643583: hypothetical protein - none -
fig|6666666.229917.peg.1564 CDS AJMH02000031.1 54433 54792 1 + 360 phage-related protein - none -
fig|6666666.229917.peg.1565 CDS AJMH02000031.1 55237 54818 -1 - 420 hypothetical protein - none -
fig|6666666.229917.peg.1566 CDS AJMH02000031.1 55471 55289 -1 - 183 hypothetical protein - none -
fig|6666666.229917.peg.1567 CDS AJMH02000031.1 55726 55857 1 + 132 hypothetical protein - none -
fig|6666666.229917.peg.1568 CDS AJMH02000031.1 55972 57138 1 + 1167 Phage tail fibers Phage tail fiber proteins
fig|6666666.229917.peg.1569 CDS AJMH02000031.1 57138 57749 3 + 612 Phage tail fibers Phage tail fiber proteins
fig|6666666.229917.peg.1570 CDS AJMH02000031.1 58735 57902 -1 - 834 Integrase - none -
fig|6666666.229917.peg.1571 CDS AJMH02000031.1 60485 58926 -2 - 1560 GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2) Purine conversions
fig|6666666.229917.peg.1572 CDS AJMH02000031.1 60783 60517 -3 - 267 YafQ toxin protein Toxin-antitoxin replicon stabilization systems
fig|6666666.229917.peg.1573 CDS AJMH02000031.1 61067 60795 -2 - 273 DNA-damage-inducible protein J DNA repair, bacterial;
Toxin-antitoxin replicon stabilization systems
fig|6666666.229917.peg.1574 CDS AJMH02000031.1 61292 61107 -2 - 186 hypothetical protein - none -
fig|6666666.229917.peg.1575 CDS AJMH02000031.1 62674 61322 -1 - 1353 C4-dicarboxylate transporter DcuC (TC 2.A.61.1.1) Citrate Metabolism, Transport, and Regulation
fig|6666666.229917.peg.1576 CDS AJMH02000031.1 63113 63568 2 + 456 FIG000325: clustered with transcription termination protein NusA NusA-TFII Cluster;
Transcription factors bacterial
fig|6666666.229917.peg.1577 CDS AJMH02000031.1 63592 65088 1 + 1497 Transcription termination protein NusA NusA-TFII Cluster;
Transcription factors bacterial
fig|6666666.229917.peg.1578 CDS AJMH02000031.1 65104 67596 1 + 2493 Translation initiation factor 2 CBSS-138119.3.peg.2719;
NusA-TFII Cluster;
Translation initiation factors bacterial
fig|6666666.229917.peg.1579 CDS AJMH02000031.1 67715 70642 2 + 2928 Type III restriction-modification system methylation subunit (EC 2.1.1.72) Restriction-Modification System
fig|6666666.229917.peg.1580 CDS AJMH02000031.1 70744 72756 1 + 2013 FIG00698532: hypothetical protein - none -
fig|6666666.229917.peg.1581 CDS AJMH02000031.1 72753 74090 3 + 1338 helicase domain protein - none -
fig|6666666.229917.peg.1582 CDS AJMH02000031.1 74068 75012 1 + 945 helicase domain protein - none -
fig|6666666.229917.peg.1583 CDS AJMH02000031.1 75099 75485 3 + 387 Ribosome-binding factor A CBSS-138119.3.peg.2719;
NusA-TFII Cluster;
Translation initiation factors bacterial
fig|6666666.229917.peg.1584 CDS AJMH02000031.1 75485 76402 2 + 918 tRNA pseudouridine synthase B (EC 4.2.1.70) CBSS-138119.3.peg.2719;
RNA pseudouridine syntheses;
Riboflavin, FMN and FAD metabolism in plants;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229917.peg.1585 CDS AJMH02000031.1 76596 76444 -3 - 153 hypothetical protein - none -
fig|6666666.229917.peg.1586 CDS AJMH02000031.1 77300 76689 -2 - 612 hypothetical protein - none -
fig|6666666.229917.peg.1587 CDS AJMH02000031.1 78614 77427 -2 - 1188 Tyrosyl-tRNA synthetase (EC 6.1.1.1) tRNA aminoacylation, Tyr
fig|6666666.229917.peg.1588 CDS AJMH02000031.1 79587 78862 -3 - 726 Sugar/maltose fermentation stimulation protein homolog Fermentations: Mixed acid
fig|6666666.229917.peg.1589 CDS AJMH02000031.1 79880 81415 2 + 1536 NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2) Phosphate metabolism
fig|6666666.229917.peg.1590 CDS AJMH02000031.1 81426 82850 3 + 1425 NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) Phosphate metabolism
fig|6666666.229917.peg.1591 CDS AJMH02000031.1 82867 83019 1 + 153 hypothetical protein - none -
fig|6666666.229917.peg.1592 CDS AJMH02000031.1 83395 83234 -1 - 162 hypothetical protein - none -
fig|6666666.229917.peg.1593 CDS AJMH02000031.1 83863 84711 1 + 849 filamentation induced by cAMP protein Fic-like protein - none -
fig|6666666.229917.peg.1594 CDS AJMH02000031.1 85388 86332 2 + 945 Selenide,water dikinase (EC 2.7.9.3) Selenocysteine metabolism;
tRNA modification Bacteria
fig|6666666.229917.peg.1595 CDS AJMH02000031.1 86687 87640 2 + 954 Putative ABC transporter of substrate X, ATP-binding subunit ABC transporter of unknown substrate X
fig|6666666.229917.peg.1596 CDS AJMH02000031.1 87637 88506 1 + 870 Putative ABC transporter of substrate X, permease subunit I ABC transporter of unknown substrate X
fig|6666666.229917.peg.1597 CDS AJMH02000031.1 89088 89348 3 + 261 Putative ABC transporter of substrate X, permease subunit II ABC transporter of unknown substrate X
fig|6666666.229917.peg.1598 CDS AJMH02000031.1 89368 90459 1 + 1092 Possible ABC transporter, periplasmic substrate X binding protein precursor ABC transporter of unknown substrate X
fig|6666666.229917.peg.1599 CDS AJMH02000031.1 90650 90510 -2 - 141 Autoinducer 2 (AI-2) ABC transport system, periplasmic AI-2 binding protein LsrB Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229917.peg.1600 CDS AJMH02000031.1 92675 90846 -2 - 1830 Excinuclease ABC subunit C DNA repair, UvrABC system
fig|6666666.229917.peg.1601 CDS AJMH02000031.1 93587 92814 -2 - 774 3-deoxy-manno-octulosonate cytidylyltransferase (EC 2.7.7.38) KDO2-Lipid A biosynthesis;
KDO2-Lipid A biosynthesis cluster 2
fig|6666666.229917.peg.1602 CDS AJMH02000031.1 93768 93589 -3 - 180 FIG002473: Protein YcaR in KDO2-Lipid A biosynthesis cluster Broadly distributed proteins not in subsystems;
KDO2-Lipid A biosynthesis cluster 2
fig|6666666.229917.peg.1603 CDS AJMH02000031.1 94764 93790 -3 - 975 Tetraacyldisaccharide 4@1-kinase (EC 2.7.1.130) KDO2-Lipid A biosynthesis;
KDO2-Lipid A biosynthesis cluster 2
fig|6666666.229917.peg.1604 CDS AJMH02000031.1 96531 94783 -3 - 1749 Lipid A export ATP-binding/permease protein MsbA (EC 3.6.3.25) KDO2-Lipid A biosynthesis;
KDO2-Lipid A biosynthesis cluster 2
fig|6666666.229917.peg.1605 CDS AJMH02000031.1 98806 96578 -1 - 2229 DNA internalization-related competence protein ComEC/Rec2 KDO2-Lipid A biosynthesis;
KDO2-Lipid A biosynthesis cluster 2
fig|6666666.229917.peg.1606 CDS AJMH02000031.1 99299 99736 2 + 438 C4-type zinc finger protein, DksA/TraR family - none -
fig|6666666.229917.peg.1607 CDS AJMH02000031.1 99853 101319 1 + 1467 Poly(A) polymerase (EC 2.7.7.19) Polyadenylation bacterial
fig|6666666.229917.peg.1608 CDS AJMH02000031.1 101312 101812 2 + 501 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) Folate Biosynthesis;
Folate biosynthesis cluster
fig|6666666.229917.peg.1609 CDS AJMH02000031.1 102029 101883 -2 - 147 hypothetical protein - none -
fig|6666666.229917.peg.1610 CDS AJMH02000031.1 102244 102110 -1 - 135 hypothetical protein - none -
fig|6666666.229917.peg.1611 CDS AJMH02000031.1 104726 102591 -2 - 2136 Phosphate acetyltransferase (EC 2.3.1.8) Fermentations: Lactate;
Fermentations: Mixed acid;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229917.peg.1612 CDS AJMH02000031.1 105998 104796 -2 - 1203 Acetate kinase (EC 2.7.2.1) Fermentations: Lactate;
Fermentations: Mixed acid;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229917.peg.1613 CDS AJMH02000031.1 106266 106709 3 + 444 FIG00638298: membrane protein YfbV - none -
fig|6666666.229917.peg.1614 CDS AJMH02000031.1 106888 107430 1 + 543 Colicin V production protein - none -
fig|6666666.229917.peg.1615 CDS AJMH02000031.1 107552 107427 -2 - 126 hypothetical protein - none -
fig|6666666.229917.peg.1616 CDS AJMH02000031.1 109649 107574 -2 - 2076 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) Glycogen metabolism;
Glycogen metabolism cluster;
Maltose and Maltodextrin Utilization;
Maltose utilization cluster
fig|6666666.229917.peg.1617 CDS AJMH02000031.1 112149 109759 -3 - 2391 Maltodextrin phosphorylase (EC 2.4.1.1) Glycogen metabolism;
Maltose and Maltodextrin Utilization;
Maltose utilization cluster
fig|6666666.229917.peg.1618 CDS AJMH02000031.1 112322 115036 2 + 2715 Transcriptional activator of maltose regulon, MalT Maltose and Maltodextrin Utilization;
Maltose utilization cluster
fig|6666666.229917.peg.1619 CDS AJMH02000031.1 116064 115189 -3 - 876 Tellurite resistance protein TehB Tellurite resistance: Chromosomal determinants
fig|6666666.229917.peg.1620 CDS AJMH02000031.1 116442 119099 3 + 2658 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) 5-FCL-like protein;
Dehydrogenase complexes;
Methionine Degradation;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229917.peg.1621 CDS AJMH02000031.1 119128 120798 1 + 1671 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) 5-FCL-like protein;
Dehydrogenase complexes;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229917.peg.1622 CDS AJMH02000031.1 120835 122316 1 + 1482 Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4) 5-FCL-like protein;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate;
TCA Cycle;
TCA Cycle
fig|6666666.229917.peg.1623 CDS AJMH02000031.1 123298 122744 -1 - 555 FIG002003: Protein YdjA - none -
fig|6666666.229917.peg.1624 CDS AJMH02000031.1 123422 125302 2 + 1881 Signal peptide peptidase SppA (EC 3.4.21.-) - none -
fig|6666666.229917.peg.1625 CDS AJMH02000031.1 125343 125549 3 + 207 Chorismate mutase I (EC 5.4.99.5) / Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) Chorismate Synthesis;
Chorismate Synthesis;
Phenylalanine and Tyrosine Branches from Chorismate;
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229917.peg.1626 CDS AJMH02000031.1 125528 125692 2 + 165 Chorismate mutase I (EC 5.4.99.5) / Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) Chorismate Synthesis;
Chorismate Synthesis;
Phenylalanine and Tyrosine Branches from Chorismate;
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229917.peg.1627 CDS AJMH02000031.1 125647 125949 1 + 303 Chorismate mutase I (EC 5.4.99.5) / Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) Chorismate Synthesis;
Chorismate Synthesis;
Phenylalanine and Tyrosine Branches from Chorismate;
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229917.peg.1628 CDS AJMH02000031.1 125960 126466 2 + 507 Chorismate mutase I (EC 5.4.99.5) / Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) Chorismate Synthesis;
Chorismate Synthesis;
Phenylalanine and Tyrosine Branches from Chorismate;
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229917.peg.1629 CDS AJMH02000031.1 126540 127163 3 + 624 Hypothetical YciO protein, TsaC/YrdC paralog YrdC-YciO-Sua5 protein family
fig|6666666.229917.peg.1630 CDS AJMH02000031.1 127218 128186 3 + 969 Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70) RNA pseudouridine syntheses
fig|6666666.229917.peg.1631 CDS AJMH02000031.1 128217 129179 3 + 963 Cys regulon transcriptional activator CysB Cysteine Biosynthesis;
LysR-family proteins in Escherichia coli
fig|6666666.229917.peg.1632 CDS AJMH02000031.1 129273 130100 3 + 828 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229917.peg.1633 CDS AJMH02000031.1 130535 130215 -2 - 321 putative cytoplasmic protein - none -
fig|6666666.229917.peg.1634 CDS AJMH02000031.1 130703 130569 -2 - 135 hypothetical protein - none -
fig|6666666.229917.peg.1635 CDS AJMH02000031.1 132004 131006 -1 - 999 Purine nucleotide synthesis repressor Purine nucleotide synthesis regulator
fig|6666666.229917.peg.1636 CDS AJMH02000031.1 133413 132310 -3 - 1104 Homoserine O-acetyltransferase (EC 2.3.1.31) Methionine Biosynthesis
fig|6666666.229917.peg.1637 CDS AJMH02000031.1 133606 134319 1 + 714 SanA protein - none -
fig|6666666.229917.peg.1638 CDS AJMH02000031.1 135289 134303 -1 - 987 Fructose repressor FruR, LacI family Fructose utilization
fig|6666666.229917.peg.1639 CDS AJMH02000031.1 136038 136295 3 + 258 FIG00699498: hypothetical protein - none -
fig|6666666.229917.peg.1640 CDS AJMH02000031.1 136450 136331 -1 - 120 FIG00697497: hypothetical protein - none -
fig|6666666.229917.peg.1641 CDS AJMH02000032.1 162 452 3 + 291 FIG00698722: hypothetical protein - none -
fig|6666666.229917.peg.1642 CDS AJMH02000032.1 473 595 2 + 123 hypothetical protein - none -
fig|6666666.229917.peg.1643 CDS AJMH02000033.1 1547 318 -2 - 1230 Tyrosine-specific transport protein - none -
fig|6666666.229917.peg.1644 CDS AJMH02000033.1 2360 1677 -2 - 684 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases - none -
fig|6666666.229917.peg.1645 CDS AJMH02000033.1 3647 2376 -2 - 1272 Nicotinamide-nucleotide adenylyltransferase, NadR family (EC 2.7.7.1) / Ribosylnicotinamide kinase (EC 2.7.1.22) NAD and NADP cofactor biosynthesis global;
NAD and NADP cofactor biosynthesis global
fig|6666666.229917.peg.1646 CDS AJMH02000033.1 4212 3967 -3 - 246 tRNA 5-methylaminomethyl-2-thiouridine synthase TusA mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.229917.peg.1647 CDS AJMH02000033.1 4300 4572 1 + 273 FIG000605: protein co-occurring with transport systems (COG1739) Transport system clustering with HemG
fig|6666666.229917.peg.1648 CDS AJMH02000033.1 4603 4743 1 + 141 hypothetical protein - none -
fig|6666666.229917.peg.1649 CDS AJMH02000033.1 4838 6301 2 + 1464 Potassium uptake protein TrkH Hyperosmotic potassium uptake;
Potassium homeostasis;
Potassium homeostasis;
Transport system clustering with HemG
fig|6666666.229917.peg.1650 CDS AJMH02000033.1 6301 6813 1 + 513 Protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-) Heme and Siroheme Biosynthesis;
Transport system clustering with HemG
fig|6666666.229917.peg.1651 CDS AJMH02000035.1 430 1287 1 + 858 Methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5) / Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9) 5-FCL-like protein;
One-carbon metabolism by tetrahydropterines;
One-carbon metabolism by tetrahydropterines;
Serine-glyoxylate cycle;
Serine-glyoxylate cycle
fig|6666666.229917.peg.1652 CDS AJMH02000035.1 3019 1376 -1 - 1644 Heat shock protein 60 family chaperone GroEL GroEL GroES
fig|6666666.229917.peg.1653 CDS AJMH02000035.1 3430 3140 -1 - 291 Heat shock protein 60 family co-chaperone GroES GroEL GroES
fig|6666666.229917.peg.1654 CDS AJMH02000035.1 3999 3517 -3 - 483 FxsA protein - none -
fig|6666666.229917.peg.1655 CDS AJMH02000035.1 4229 5647 2 + 1419 Aspartate ammonia-lyase (EC 4.3.1.1) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229917.peg.1656 CDS AJMH02000035.1 6577 6798 1 + 222 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) LOS core oligosaccharide biosynthesis
fig|6666666.229917.peg.1657 CDS AJMH02000035.1 6967 6770 -1 - 198 hypothetical protein - none -
fig|6666666.229917.peg.1658 CDS AJMH02000035.1 7160 7014 -2 - 147 Integral membrane protein - none -
fig|6666666.229917.peg.1659 CDS AJMH02000035.1 8289 7705 -3 - 585 Hydrolase, haloacid dehalogenase-like family - none -
fig|6666666.229917.peg.1660 CDS AJMH02000036.1 663 13 -3 - 651 Mobile element protein - none -
fig|6666666.229917.peg.1661 CDS AJMH02000037.1 2217 115 -3 - 2103 Translation elongation factor G Translation elongation factor G family
fig|6666666.229917.peg.1662 CDS AJMH02000037.1 2802 2332 -3 - 471 SSU ribosomal protein S7p (S5e) Ribosome SSU bacterial
fig|6666666.229917.peg.1663 CDS AJMH02000037.1 3092 2955 -2 - 138 SSU ribosomal protein S12p (S23e) Ribosomal protein S12p Asp methylthiotransferase;
Ribosome SSU bacterial
fig|6666666.229917.peg.1664 CDS AJMH02000038.1 634 17 -1 - 618 FIG00698503: hypothetical protein - none -
fig|6666666.229917.peg.1665 CDS AJMH02000039.1 145 285 1 + 141 hypothetical protein - none -
fig|6666666.229917.peg.1666 CDS AJMH02000039.1 1045 929 -1 - 117 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229917.peg.1667 CDS AJMH02000039.1 1479 1252 -3 - 228 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229917.peg.1668 CDS AJMH02000041.1 1613 81 -2 - 1533 Na+/H+ antiporter - none -
fig|6666666.229917.peg.1669 CDS AJMH02000041.1 2054 2452 2 + 399 DNA-binding protein H-NS - none -
fig|6666666.229917.peg.1670 CDS AJMH02000041.1 2504 3373 2 + 870 Formyltetrahydrofolate deformylase (EC 3.5.1.10) 5-FCL-like protein;
One-carbon metabolism by tetrahydropterines
fig|6666666.229917.peg.1671 CDS AJMH02000041.1 3508 4137 1 + 630 Cell division protein FtsJ / Ribosomal RNA large subunit methyltransferase E (EC 2.1.1.-) ## LSU rRNA Um2552 Bacterial Cell Division;
RNA methylation
fig|6666666.229917.peg.1672 CDS AJMH02000041.1 4776 6158 3 + 1383 Cell division protein FtsH (EC 3.4.24.-) Bacterial Cell Division;
Cell division-ribosomal stress proteins cluster;
Folate biosynthesis cluster
fig|6666666.229917.peg.1673 CDS AJMH02000041.1 6255 6791 3 + 537 Putative transporting ATPase - none -
fig|6666666.229917.peg.1674 CDS AJMH02000041.1 7977 6919 -3 - 1059 Ferric iron ABC transporter, ATP-binding protein Iron acquisition in Streptococcus
fig|6666666.229917.peg.1675 CDS AJMH02000041.1 9693 7999 -3 - 1695 Ferric iron ABC transporter, permease protein Iron acquisition in Streptococcus
fig|6666666.229917.peg.1676 CDS AJMH02000041.1 10139 9696 -2 - 444 Thiamin ABC transporter, ATPase component Thiamin biosynthesis
fig|6666666.229917.peg.1677 CDS AJMH02000041.1 10776 10153 -3 - 624 Thiamin ABC transporter, ATPase component Thiamin biosynthesis
fig|6666666.229917.peg.1678 CDS AJMH02000041.1 11796 10798 -3 - 999 ABC-type Fe3+ transport system, periplasmic component - none -
fig|6666666.229917.peg.1679 CDS AJMH02000041.1 12434 13420 2 + 987 Phosphoglycerate transport regulatory protein PgtC Phosphoglycerate transport system
fig|6666666.229917.peg.1680 CDS AJMH02000041.1 13417 15399 1 + 1983 Phosphoglycerate transport system sensor protein PgtB (EC 2.7.3.-) Phosphoglycerate transport system
fig|6666666.229917.peg.1681 CDS AJMH02000041.1 15392 15595 2 + 204 Phosphoglycerate transport system transcriptional regulatory protein PgtA Phosphoglycerate transport system
fig|6666666.229917.peg.1682 CDS AJMH02000041.1 15601 16641 1 + 1041 Phosphoglycerate transport system transcriptional regulatory protein PgtA Phosphoglycerate transport system
fig|6666666.229917.peg.1683 CDS AJMH02000041.1 17528 16689 -2 - 840 NADPH dependent preQ0 reductase (EC 1.7.1.13) - none -
fig|6666666.229917.peg.1684 CDS AJMH02000041.1 18319 17537 -1 - 783 Zn-ribbon-containing, possibly nucleic-acid-binding protein - none -
fig|6666666.229917.peg.1685 CDS AJMH02000041.1 18399 18740 3 + 342 Hypothetical protein YqcC (clustered with tRNA pseudouridine synthase C) - none -
fig|6666666.229917.peg.1686 CDS AJMH02000041.1 18737 19450 2 + 714 tRNA pseudouridine synthase C (EC 4.2.1.70) RNA pseudouridine syntheses;
tRNA modification Bacteria
fig|6666666.229917.peg.1687 CDS AJMH02000041.1 19504 19668 1 + 165 hypothetical protein - none -
fig|6666666.229917.peg.1688 CDS AJMH02000041.1 19859 20068 2 + 210 Cold shock protein CspD Cold shock, CspA family of proteins
fig|6666666.229917.peg.1689 CDS AJMH02000041.1 20580 20134 -3 - 447 Macrodomain Ter protein YcbG - none -
fig|6666666.229917.peg.1690 CDS AJMH02000041.1 20727 22511 3 + 1785 ATP-dependent protease La (EC 3.4.21.53) Type II Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229917.peg.1691 CDS AJMH02000041.1 22654 23184 1 + 531 3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabA form (EC 4.2.1.59) Fatty Acid Biosynthesis FASII
fig|6666666.229917.peg.1692 CDS AJMH02000041.1 23609 23965 2 + 357 DsrE-related protein - none -
fig|6666666.229917.peg.1693 CDS AJMH02000041.1 24036 27131 3 + 3096 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) DNA repair, bacterial RecBCD pathway
fig|6666666.229917.peg.1694 CDS AJMH02000041.1 27176 27700 2 + 525 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) DNA repair, bacterial RecBCD pathway
fig|6666666.229917.peg.1695 CDS AJMH02000041.1 27700 29679 1 + 1980 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) DNA repair, bacterial RecBCD pathway
fig|6666666.229917.peg.1696 CDS AJMH02000041.1 29692 30288 1 + 597 hypothetical protein - none -
fig|6666666.229917.peg.1697 CDS AJMH02000041.1 30530 30958 2 + 429 LSU ribosomal protein L13p (L13Ae) Ribosome LSU bacterial
fig|6666666.229917.peg.1698 CDS AJMH02000041.1 30975 31367 3 + 393 SSU ribosomal protein S9p (S16e) Ribosome SSU bacterial
fig|6666666.229917.peg.1699 CDS AJMH02000041.1 31528 32313 1 + 786 tRNA pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses;
tRNA modification Archaea;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229917.peg.1700 CDS AJMH02000041.1 32472 32326 -3 - 147 RelE/StbE replicon stabilization toxin Toxin-antitoxin replicon stabilization systems
fig|6666666.229917.peg.1701 CDS AJMH02000041.1 32608 32456 -1 - 153 StbE replicon stabilization toxin - none -
fig|6666666.229917.peg.1702 CDS AJMH02000041.1 32859 32605 -3 - 255 RelB/StbD replicon stabilization protein (antitoxin to RelE/StbE) Toxin-antitoxin replicon stabilization systems
fig|6666666.229917.peg.1703 CDS AJMH02000041.1 34531 33074 -1 - 1458 2-oxoglutarate/malate translocator - none -
fig|6666666.229917.peg.1704 CDS AJMH02000041.1 34761 35540 3 + 780 Protein of unknown function DUF419 - none -
fig|6666666.229917.peg.1705 CDS AJMH02000041.1 38091 35611 -3 - 2481 Trimethylamine-N-oxide reductase (EC 1.6.6.9) - none -
fig|6666666.229917.peg.1706 CDS AJMH02000041.1 39252 38152 -3 - 1101 Cytochrome c-type protein TorY - none -
fig|6666666.229917.peg.1707 CDS AJMH02000041.1 39557 41014 2 + 1458 tRNA S(4)U 4-thiouridine synthase (former ThiI) / Rhodanese-like domain required for thiamine synthesis Thiamin biosynthesis;
Thiamin biosynthesis;
tRNA modification Archaea;
tRNA modification Archaea;
tRNA modification Bacteria;
tRNA modification Bacteria
fig|6666666.229917.peg.1708 CDS AJMH02000041.1 41802 41098 -3 - 705 Alpha-aspartyl dipeptidase Peptidase E (EC 3.4.13.21) Dipeptidases (EC 3.4.13.-)
fig|6666666.229917.peg.1709 CDS AJMH02000041.1 42302 42976 2 + 675 Putative DNA-binding protein in cluster with Type I restriction-modification system Restriction-Modification System
fig|6666666.229917.peg.1710 CDS AJMH02000041.1 44009 43041 -2 - 969 FIG002813: LPPG:FO 2-phospho-L-lactate transferase like, CofD-like - none -
fig|6666666.229917.peg.1711 CDS AJMH02000041.1 44367 45380 3 + 1014 Molybdenum cofactor biosynthesis protein MoaA Molybdenum cofactor biosynthesis;
ar-104-EC Molybdenum cofactor biosynthesis moaABCDE
fig|6666666.229917.peg.1712 CDS AJMH02000041.1 45393 45914 3 + 522 Molybdenum cofactor biosynthesis protein MoaC Molybdenum cofactor biosynthesis;
ar-104-EC Molybdenum cofactor biosynthesis moaABCDE
fig|6666666.229917.peg.1713 CDS AJMH02000041.1 45914 46162 2 + 249 Molybdenum cofactor biosynthesis protein MoaD Molybdenum cofactor biosynthesis;
ar-104-EC Molybdenum cofactor biosynthesis moaABCDE
fig|6666666.229917.peg.1714 CDS AJMH02000041.1 46163 46618 2 + 456 Molybdenum cofactor biosynthesis protein MoaE Molybdenum cofactor biosynthesis;
ar-104-EC Molybdenum cofactor biosynthesis moaABCDE
fig|6666666.229917.peg.1715 CDS AJMH02000041.1 46818 47459 3 + 642 Stringent starvation protein A Carbon Starvation
fig|6666666.229917.peg.1716 CDS AJMH02000041.1 47471 47932 2 + 462 Stringent starvation protein B Carbon Starvation
fig|6666666.229917.peg.1717 CDS AJMH02000041.1 49498 48095 -1 - 1404 Asparaginyl-tRNA synthetase (EC 6.1.1.22) tRNA aminoacylation, Asp and Asn;
tRNA modification Archaea
fig|6666666.229917.peg.1718 CDS AJMH02000041.1 49694 50923 2 + 1230 Mlc, transcriptional repressor of MalT (the transcriptional activator of maltose regulon) and manXYZ operon Maltose and Maltodextrin Utilization
fig|6666666.229917.peg.1719 CDS AJMH02000041.1 51000 51728 3 + 729 Dethiobiotin synthetase (EC 6.3.3.3) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229917.peg.1720 CDS AJMH02000041.1 52458 51817 -3 - 642 Autoinducer 2 (AI-2) kinase LsrK (EC 2.7.1.-) Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229917.peg.1721 CDS AJMH02000041.1 54406 53441 -1 - 966 LsrR, transcriptional repressor of lsr operon Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229917.peg.1722 CDS AJMH02000042.1 768 610 -3 - 159 Outer membrane protein NlpB, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and YfgL); Lipoprotein-34 precursor Lipopolysaccharide assembly
fig|6666666.229917.peg.1723 CDS AJMH02000042.1 1603 899 -1 - 705 Outer membrane protein NlpB, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and YfgL); Lipoprotein-34 precursor Lipopolysaccharide assembly
fig|6666666.229917.peg.1724 CDS AJMH02000042.1 2610 1717 -3 - 894 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229917.peg.1725 CDS AJMH02000042.1 2768 3232 2 + 465 Thiol peroxidase, Bcp-type (EC 1.11.1.15) CBSS-316057.3.peg.3521;
Thioredoxin-disulfide reductase
fig|6666666.229917.peg.1726 CDS AJMH02000042.1 5956 3296 -1 - 2661 TolA protein Ton and Tol transport systems
fig|6666666.229917.peg.1727 CDS AJMH02000042.1 6072 6185 3 + 114 hypothetical protein - none -
fig|6666666.229917.peg.1728 CDS AJMH02000042.1 8035 6182 -1 - 1854 GTP-binding protein TypA/BipA - none -
fig|6666666.229917.peg.1729 CDS AJMH02000042.1 8423 9832 2 + 1410 Glutamine synthetase type I (EC 6.3.1.2) Ammonia assimilation;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Glutamine synthetases;
Peptidoglycan Biosynthesis
fig|6666666.229917.peg.1730 CDS AJMH02000044.1 127389 127550 3 + 162 hypothetical protein - none -
fig|6666666.229917.peg.1731 CDS AJMH02000044.1 131189 131055 -2 - 135 hypothetical protein - none -
fig|6666666.229917.peg.1732 CDS AJMH02000044.1 131450 131617 2 + 168 hypothetical protein - none -
fig|6666666.229917.peg.1733 CDS AJMH02000044.1 131614 131898 1 + 285 hypothetical protein - none -
fig|6666666.229917.peg.1734 CDS AJMH02000044.1 133732 133388 -1 - 345 hypothetical protein - none -
fig|6666666.229917.peg.1735 CDS AJMH02000044.1 135247 133766 -1 - 1482 Coupling protein VirD4, ATPase required for T-DNA transfer - none -
fig|6666666.229917.peg.1736 CDS AJMH02000044.1 136080 135460 -3 - 621 ATPase required for both assembly of type IV secretion complex and secretion of T-DNA complex, VirB11 - none -
fig|6666666.229917.peg.1737 CDS AJMH02000044.1 136489 136106 -1 - 384 ATPase required for both assembly of type IV secretion complex and secretion of T-DNA complex, VirB11 - none -
fig|6666666.229917.peg.1738 CDS AJMH02000044.1 137530 136502 -1 - 1029 Inner membrane protein forms channel for type IV secretion of T-DNA complex (VirB10) - none -
fig|6666666.229917.peg.1739 CDS AJMH02000044.1 138739 137540 -1 - 1200 Outer membrane and periplasm component of type IV secretion of T-DNA complex, has secretin-like domain, VirB9 - none -
fig|6666666.229917.peg.1740 CDS AJMH02000044.1 138879 138736 -3 - 144 hypothetical protein - none -
fig|6666666.229917.peg.1741 CDS AJMH02000044.1 139949 138948 -2 - 1002 Inner membrane protein of type IV secretion of T-DNA complex, VirB6 - none -
fig|6666666.229917.peg.1742 CDS AJMH02000044.1 140186 139959 -2 - 228 hypothetical protein - none -
fig|6666666.229917.peg.1743 CDS AJMH02000044.1 140931 140200 -3 - 732 Minor pilin of type IV secretion complex, VirB5 - none -
fig|6666666.229917.peg.1744 CDS AJMH02000044.1 143443 140942 -1 - 2502 ATPase provides energy for both assembly of type IV secretion complex and secretion of T-DNA complex (VirB4) - none -
fig|6666666.229917.peg.1745 CDS AJMH02000044.1 143801 143631 -2 - 171 hypothetical protein - none -
fig|6666666.229917.peg.1746 CDS AJMH02000044.1 143807 144409 2 + 603 FIG00696574: hypothetical protein - none -
fig|6666666.229917.peg.1747 CDS AJMH02000044.1 144384 144686 3 + 303 FIG00696353: hypothetical protein - none -
fig|6666666.229917.peg.1748 CDS AJMH02000044.1 144698 148114 2 + 3417 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) DNA repair, bacterial RecBCD pathway
fig|6666666.229917.peg.1749 CDS AJMH02000044.1 148559 148116 -2 - 444 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Ribosome biogenesis bacterial;
YrdC-YciO-Sua5 protein family
fig|6666666.229917.peg.1750 CDS AJMH02000044.1 149018 148569 -2 - 450 DNA polymerase III psi subunit (EC 2.7.7.7) - none -
fig|6666666.229917.peg.1751 CDS AJMH02000044.1 149074 150078 1 + 1005 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) RNA methylation
fig|6666666.229917.peg.1752 CDS AJMH02000044.1 150165 150314 3 + 150 hypothetical protein - none -
fig|6666666.229917.peg.1753 CDS AJMH02000044.1 150694 151236 1 + 543 hypothetical protein - none -
fig|6666666.229917.peg.1754 CDS AJMH02000044.1 151371 152633 3 + 1263 Serine hydroxymethyltransferase (EC 2.1.2.1) 5-FCL-like protein;
Glycine Biosynthesis;
Glycine and Serine Utilization;
Serine-glyoxylate cycle;
Serine Biosynthesis;
YrdC-YciO-Sua5 protein family
fig|6666666.229917.peg.1755 CDS AJMH02000044.1 153738 154244 3 + 507 RTX toxin activating lysine-acyltransferase (EC 2.3.1.-) - none -
fig|6666666.229917.peg.1756 CDS AJMH02000044.1 154257 157424 3 + 3168 bifunctional hemolysin-adenylate cyclase precursor cAMP signaling in bacteria
fig|6666666.229917.peg.1757 CDS AJMH02000044.1 157493 159616 2 + 2124 Methionine ABC transporter ATP-binding protein Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229917.peg.1758 CDS AJMH02000044.1 159631 161064 1 + 1434 RTX toxin transporter, determinant D # Leukotoxin secretion protein D - none -
fig|6666666.229917.peg.1759 CDS AJMH02000044.1 161474 163354 2 + 1881 PTS system, mannitol-specific IIC component (EC 2.7.1.69) / PTS system, mannitol-specific IIB component (EC 2.7.1.69) / PTS system, mannitol-specific IIA component (EC 2.7.1.69) Mannitol Utilization;
Mannitol Utilization;
Mannitol Utilization
fig|6666666.229917.peg.1760 CDS AJMH02000044.1 163432 164580 1 + 1149 Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17) Mannitol Utilization
fig|6666666.229917.peg.1761 CDS AJMH02000044.1 164655 165167 3 + 513 Mannitol operon repressor Mannitol Utilization
fig|6666666.229917.peg.1762 CDS AJMH02000044.1 166282 165272 -1 - 1011 Myo-inositol 2-dehydrogenase 1 (EC 1.1.1.18) Inositol catabolism
fig|6666666.229917.peg.1763 CDS AJMH02000044.1 167181 166285 -3 - 897 Inosose dehydratase (EC 4.2.1.44) Inositol catabolism
fig|6666666.229917.peg.1764 CDS AJMH02000044.1 169183 167237 -1 - 1947 Epi-inositol hydrolase (EC 3.7.1.-) Inositol catabolism
fig|6666666.229917.peg.1765 CDS AJMH02000044.1 169247 169375 2 + 129 hypothetical protein - none -
fig|6666666.229917.peg.1766 CDS AJMH02000044.1 169495 171402 1 + 1908 5-keto-2-deoxygluconokinase (EC 2.7.1.92) / uncharacterized domain Inositol catabolism;
Inositol catabolism
fig|6666666.229917.peg.1767 CDS AJMH02000044.1 172281 171442 -3 - 840 Predicted transcriptional regulator of the myo-inositol catabolic operon Inositol catabolism
fig|6666666.229917.peg.1768 CDS AJMH02000044.1 172324 172455 1 + 132 hypothetical protein - none -
fig|6666666.229917.peg.1769 CDS AJMH02000044.1 173240 172410 -2 - 831 5-deoxy-glucuronate isomerase (EC 5.3.1.-) Inositol catabolism
fig|6666666.229917.peg.1770 CDS AJMH02000044.1 173504 174307 2 + 804 Inositol-1-monophosphatase (EC 3.1.3.25) - none -
fig|6666666.229917.peg.1771 CDS AJMH02000044.1 174325 175668 1 + 1344 putative hexose phosphate transport protein - none -
fig|6666666.229917.peg.1772 CDS AJMH02000044.1 175906 177414 1 + 1509 Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27) Inositol catabolism
fig|6666666.229917.peg.1773 CDS AJMH02000044.1 177505 178644 1 + 1140 Myo-inositol 2-dehydrogenase 2 (EC 1.1.1.18) Inositol catabolism
fig|6666666.229917.peg.1774 CDS AJMH02000044.1 178945 179883 1 + 939 Inositol transport system sugar-binding protein Inositol catabolism
fig|6666666.229917.peg.1775 CDS AJMH02000044.1 179967 180899 3 + 933 Inositol transport system sugar-binding protein Inositol catabolism
fig|6666666.229917.peg.1776 CDS AJMH02000044.1 180968 182473 2 + 1506 Inositol transport system ATP-binding protein Inositol catabolism
fig|6666666.229917.peg.1777 CDS AJMH02000044.1 182524 183477 1 + 954 Inositol transport system permease protein Inositol catabolism
fig|6666666.229917.peg.1778 CDS AJMH02000044.1 186181 183560 -1 - 2622 Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) 5-FCL-like protein;
Butanol Biosynthesis;
Butanol Biosynthesis;
Fermentations: Lactate;
Fermentations: Mixed acid;
Fermentations: Mixed acid;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229917.peg.1779 CDS AJMH02000044.1 186344 186460 2 + 117 hypothetical protein - none -
fig|6666666.229917.peg.1780 CDS AJMH02000044.1 189158 186531 -2 - 2628 Iron siderophore receptor protein - none -
fig|6666666.229917.peg.1781 CDS AJMH02000044.1 190343 189378 -2 - 966 Protein-export membrane protein SecF (TC 3.A.5.1.1) CBSS-211586.1.peg.2832
fig|6666666.229917.peg.1782 CDS AJMH02000044.1 192177 190360 -3 - 1818 Protein-export membrane protein SecD (TC 3.A.5.1.1) CBSS-211586.1.peg.2832
fig|6666666.229917.peg.1783 CDS AJMH02000044.1 192540 192241 -3 - 300 Preprotein translocase subunit YajC (TC 3.A.5.1.1) CBSS-211586.1.peg.2832
fig|6666666.229917.peg.1784 CDS AJMH02000044.1 192697 192557 -1 - 141 hypothetical protein - none -
fig|6666666.229917.peg.1785 CDS AJMH02000044.1 193983 192832 -3 - 1152 tRNA-guanine transglycosylase (EC 2.4.2.29) CBSS-211586.1.peg.2832;
Queuosine-Archaeosine Biosynthesis;
Scaffold proteins for [4Fe-4S] cluster assembly (MRP family);
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229917.peg.1786 CDS AJMH02000044.1 194456 195592 2 + 1137 Periplasmic aromatic amino acid aminotransferase beta precursor (EC 2.6.1.57) Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229917.peg.1787 CDS AJMH02000044.1 196490 195636 -2 - 855 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) CBSS-211586.1.peg.2832;
Queuosine-Archaeosine Biosynthesis;
Scaffold proteins for [4Fe-4S] cluster assembly (MRP family);
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229917.peg.1788 CDS AJMH02000044.1 198407 197019 -2 - 1389 Putative protease - none -
fig|6666666.229917.peg.1789 CDS AJMH02000044.1 198943 198578 -1 - 366 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) Ammonia assimilation;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229917.peg.1790 CDS AJMH02000044.1 199371 199712 3 + 342 conserved hypothetical protein - none -
fig|6666666.229917.peg.1791 CDS AJMH02000044.1 200059 199769 -1 - 291 RelE/StbE replicon stabilization toxin Toxin-antitoxin replicon stabilization systems
fig|6666666.229917.peg.1792 CDS AJMH02000044.1 200303 200049 -2 - 255 RelB/StbD replicon stabilization protein (antitoxin to RelE/StbE) Toxin-antitoxin replicon stabilization systems
fig|6666666.229917.peg.1793 CDS AJMH02000044.1 201516 200755 -3 - 762 DNA polymerase III epsilon subunit (EC 2.7.7.7) CBSS-228410.1.peg.134;
CBSS-342610.3.peg.1536
fig|6666666.229917.peg.1794 CDS AJMH02000044.1 201584 202051 2 + 468 Ribonuclease HI (EC 3.1.26.4) CBSS-228410.1.peg.134;
CBSS-342610.3.peg.1536;
Ribonuclease H
fig|6666666.229917.peg.1795 CDS AJMH02000044.1 203470 202139 -1 - 1332 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229917.peg.1796 CDS AJMH02000044.1 204626 203481 -2 - 1146 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) @ Histidinol-phosphate aminotransferase (EC 2.6.1.9) Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229917.peg.1797 CDS AJMH02000044.1 205735 204653 -1 - 1083 Phosphoserine aminotransferase (EC 2.6.1.52) Glycine and Serine Utilization;
Pyridoxin (Vitamin B6) Biosynthesis;
Serine Biosynthesis
fig|6666666.229917.peg.1798 CDS AJMH02000044.1 205910 205794 -2 - 117 hypothetical protein - none -
fig|6666666.229917.peg.1799 CDS AJMH02000044.1 205935 206267 3 + 333 UPF0265 protein YeeX Broadly distributed proteins not in subsystems
fig|6666666.229917.peg.1800 CDS AJMH02000044.1 208011 206422 -3 - 1590 L-lactate permease Lactate utilization
fig|6666666.229917.peg.1801 CDS AJMH02000044.1 209399 208254 -2 - 1146 L-lactate dehydrogenase (EC 1.1.2.3) Lactate utilization;
Respiratory dehydrogenases 1
fig|6666666.229917.peg.1802 CDS AJMH02000044.1 209854 209708 -1 - 147 hypothetical protein - none -
fig|6666666.229917.peg.1803 CDS AJMH02000044.1 210981 210031 -3 - 951 Ribose-phosphate pyrophosphokinase (EC 2.7.6.1) A Gammaproteobacteria Cluster Relating to Translation;
Pentose phosphate pathway;
Transcription repair cluster
fig|6666666.229917.peg.1804 CDS AJMH02000044.1 211933 211022 -1 - 912 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148) A Gammaproteobacteria Cluster Relating to Translation;
Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.229917.peg.1805 CDS AJMH02000044.1 212556 211933 -3 - 624 Outer membrane lipoprotein LolB precursor - none -
fig|6666666.229917.peg.1806 CDS AJMH02000044.1 213895 212591 -1 - 1305 tRNA nucleotidyltransferase (EC 2.7.7.21) (EC 2.7.7.25) Polyadenylation bacterial;
tRNA nucleotidyltransferase
fig|6666666.229917.peg.1807 CDS AJMH02000044.1 214506 213895 -3 - 612 SH3 domain protein - none -
fig|6666666.229917.peg.1808 CDS AJMH02000044.1 215840 214575 -2 - 1266 Probable low-affinity inorganic phosphate transporter Phosphate metabolism
fig|6666666.229917.peg.1809 CDS AJMH02000044.1 216546 215866 -3 - 681 Phosphate transport regulator (distant homolog of PhoU) Phosphate metabolism
fig|6666666.229917.peg.1810 CDS AJMH02000044.1 216711 217865 3 + 1155 Adenylate cyclase (EC 4.6.1.1) cAMP signaling in bacteria
fig|6666666.229917.peg.1811 CDS AJMH02000044.1 217868 219241 2 + 1374 DNA repair protein RadA DNA repair, bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229917.peg.1812 CDS AJMH02000044.1 219780 220259 3 + 480 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229917.peg.1813 CDS AJMH02000044.1 220263 223007 3 + 2745 Cell division protein FtsK Bacterial Cell Division;
Bacterial Cytoskeleton;
Bacterial RNA-metabolizing Zn-dependent hydrolases;
CBSS-83333.1.peg.876
fig|6666666.229917.peg.1814 CDS AJMH02000044.1 223100 223717 2 + 618 Outer membrane lipoprotein carrier protein LolA CBSS-83333.1.peg.876;
Lipopolysaccharide assembly;
Lipoprotein sorting system
fig|6666666.229917.peg.1815 CDS AJMH02000044.1 223730 225070 2 + 1341 FIG065221: Holliday junction DNA helicase CBSS-83333.1.peg.876
fig|6666666.229917.peg.1816 CDS AJMH02000044.1 227234 225567 -2 - 1668 C4-dicarboxylate transporter DcuB - none -
fig|6666666.229917.peg.1817 CDS AJMH02000044.1 227542 228858 1 + 1317 Seryl-tRNA synthetase (EC 6.1.1.11) CBSS-326442.4.peg.1852;
Glycine and Serine Utilization;
tRNA aminoacylation, Ser
fig|6666666.229917.peg.1818 CDS AJMH02000044.1 228839 228952 2 + 114 hypothetical protein - none -
fig|6666666.229917.peg.1819 CDS AJMH02000044.1 229833 228937 -3 - 897 Cytidine deaminase (EC 3.5.4.5) Murein hydrolase regulation and cell death;
pyrimidine conversions;
tRNA modification Bacteria
fig|6666666.229917.peg.1820 CDS AJMH02000044.1 231052 229955 -1 - 1098 ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1) Polyamine Metabolism
fig|6666666.229917.peg.1821 CDS AJMH02000044.1 231956 231183 -2 - 774 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) Polyamine Metabolism
fig|6666666.229917.peg.1822 CDS AJMH02000044.1 232816 231956 -1 - 861 Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) Polyamine Metabolism
fig|6666666.229917.peg.1823 CDS AJMH02000044.1 233918 232800 -2 - 1119 Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) Polyamine Metabolism
fig|6666666.229917.peg.1824 CDS AJMH02000044.1 234182 235426 2 + 1245 Tripeptide aminopeptidase (EC 3.4.11.4) - none -
fig|6666666.229917.peg.1825 CDS AJMH02000044.1 238159 235502 -1 - 2658 Paraquat-inducible protein B Oxidative stress
fig|6666666.229917.peg.1826 CDS AJMH02000044.1 239405 238122 -2 - 1284 Paraquat-inducible protein A Oxidative stress
fig|6666666.229917.peg.1827 CDS AJMH02000044.1 239623 240231 1 + 609 ProQ: influences osmotic activation of compatible solute ProP - none -
fig|6666666.229917.peg.1828 CDS AJMH02000044.1 240305 242362 2 + 2058 Tail-specific protease precursor (EC 3.4.21.102) - none -
fig|6666666.229917.peg.1829 CDS AJMH02000044.1 242440 243948 1 + 1509 L,D-transpeptidase YcbB CBSS-228400.4.peg.1623
fig|6666666.229917.peg.1830 CDS AJMH02000044.1 244013 244573 2 + 561 FIG001587: exported protein CBSS-228400.4.peg.1623
fig|6666666.229917.peg.1831 CDS AJMH02000044.1 244651 245289 1 + 639 Hypothetical metal-binding enzyme, YcbL homolog CBSS-228400.4.peg.1623
fig|6666666.229917.peg.1832 CDS AJMH02000044.1 245480 245358 -2 - 123 hypothetical protein - none -
fig|6666666.229917.peg.1833 CDS AJMH02000044.1 245565 248372 3 + 2808 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) Dehydrogenase complexes;
TCA Cycle
fig|6666666.229917.peg.1834 CDS AJMH02000044.1 248498 249721 2 + 1224 Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61) Dehydrogenase complexes;
TCA Cycle
fig|6666666.229917.peg.1835 CDS AJMH02000044.1 249908 251077 2 + 1170 Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) Serine-glyoxylate cycle;
TCA Cycle
fig|6666666.229917.peg.1836 CDS AJMH02000044.1 251088 251960 3 + 873 Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) Serine-glyoxylate cycle;
TCA Cycle
fig|6666666.229917.peg.1838 CDS AJMH02000044.1 254353 252131 -1 - 2223 Formate dehydrogenase H (EC 1.2.1.2) @ selenocysteine-containing Formate dehydrogenase
fig|6666666.229917.peg.1840 CDS AJMH02000044.1 255343 254882 -1 - 462 Hydrogenase 3 maturation protease (EC 3.4.-.-) - none -
fig|6666666.229917.peg.1841 CDS AJMH02000044.1 255737 255333 -2 - 405 Formate hydrogenlyase transcriptional activator Formate hydrogenase
fig|6666666.229917.peg.1842 CDS AJMH02000044.1 256648 255872 -1 - 777 Formate hydrogenlyase subunit 7 Formate hydrogenase
fig|6666666.229917.peg.1843 CDS AJMH02000044.1 257292 256696 -3 - 597 Formate hydrogenlyase complex 3 iron-sulfur protein; Formate hydrogenlyase subunit 6; Ni,Fe-hydrogenase III medium subunit Formate hydrogenase
fig|6666666.229917.peg.1844 CDS AJMH02000044.1 259036 257306 -1 - 1731 Formate hydrogenlyase subunit 5 Formate hydrogenase
fig|6666666.229917.peg.1845 CDS AJMH02000044.1 260593 259055 -1 - 1539 Hydrogenase-4 component F - none -
fig|6666666.229917.peg.1846 CDS AJMH02000044.1 261236 260598 -2 - 639 Hydrogenase-4 component E (EC 1.-.-.-) Formate hydrogenase
fig|6666666.229917.peg.1847 CDS AJMH02000044.1 262692 261247 -3 - 1446 Hydrogenase-4 component D - none -
fig|6666666.229917.peg.1848 CDS AJMH02000044.1 263667 262705 -3 - 963 Hydrogenase-4 component C - none -
fig|6666666.229917.peg.1849 CDS AJMH02000044.1 265699 263678 -1 - 2022 Hydrogenase-4 component B (EC 1.-.-.-) / Formate hydrogenlyase subunit 3 Formate hydrogenase;
Formate hydrogenase
fig|6666666.229917.peg.1850 CDS AJMH02000044.1 266331 265732 -3 - 600 Hydrogenase-4 component A - none -
fig|6666666.229917.peg.1851 CDS AJMH02000044.1 266627 268912 2 + 2286 [NiFe] hydrogenase metallocenter assembly protein HypF G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229917.peg.1852 CDS AJMH02000044.1 270192 269479 -3 - 714 Formate dehydrogenase -O, gamma subunit (EC 1.2.1.2) Anaerobic respiratory reductases;
Formate hydrogenase
fig|6666666.229917.peg.1853 CDS AJMH02000044.1 271015 270185 -1 - 831 Formate dehydrogenase O beta subunit (EC 1.2.1.2) Formate dehydrogenase;
Formate hydrogenase
fig|6666666.229917.peg.1854 CDS AJMH02000044.1 274223 271113 -2 - 3111 Formate dehydrogenase N alpha subunit (EC 1.2.1.2) @ selenocysteine-containing Formate dehydrogenase;
Formate hydrogenase
fig|6666666.229917.peg.1855 CDS AJMH02000044.1 274444 275268 1 + 825 Formate dehydrogenase chain D (EC 1.2.1.2) Formate hydrogenase
fig|6666666.229917.peg.1856 CDS AJMH02000044.1 275317 276315 1 + 999 Gluconate utilization system Gnt-I transcriptional repressor D-gluconate and ketogluconates metabolism
fig|6666666.229917.peg.1857 CDS AJMH02000044.1 276266 276388 2 + 123 hypothetical protein - none -
fig|6666666.229917.peg.1858 CDS AJMH02000044.1 276903 276385 -3 - 519 Gluconokinase (EC 2.7.1.12) D-gluconate and ketogluconates metabolism;
Entner-Doudoroff Pathway
fig|6666666.229917.peg.1859 CDS AJMH02000044.1 277121 278470 2 + 1350 Low-affinity gluconate/H+ symporter GntU D-gluconate and ketogluconates metabolism
fig|6666666.229917.peg.1860 CDS AJMH02000044.1 278644 280818 1 + 2175 ATP-dependent DNA helicase UvrD/PcrA DNA repair, bacterial UvrD and related helicases
fig|6666666.229917.peg.1861 CDS AJMH02000044.1 281778 280951 -3 - 828 DNA ligase (ATP) (EC 6.5.1.1) DNA ligases
fig|6666666.229917.peg.1862 CDS AJMH02000044.1 282698 281955 -2 - 744 Probable transmembrane protein - none -
fig|6666666.229917.peg.1863 CDS AJMH02000044.1 282965 282711 -2 - 255 YoeB toxin protein Toxin-antitoxin replicon stabilization systems
fig|6666666.229917.peg.1864 CDS AJMH02000044.1 283213 282962 -1 - 252 YefM protein (antitoxin to YoeB) Toxin-antitoxin replicon stabilization systems
fig|6666666.229917.peg.1865 CDS AJMH02000044.1 284278 283322 -1 - 957 Polysaccharide polymerization protein - none -
fig|6666666.229917.peg.1866 CDS AJMH02000044.1 285798 284275 -3 - 1524 putative flippase - none -
fig|6666666.229917.peg.1867 CDS AJMH02000044.1 285929 286705 2 + 777 Lipopolysaccharide core biosynthesis glycosyltransferase WadA - none -
fig|6666666.229917.peg.1868 CDS AJMH02000044.1 286714 287907 1 + 1194 DNA for glycosyltransferase, lytic transglycosylase, dTDP-4-rhamnose reductase Rhamnose containing glycans
fig|6666666.229917.peg.1869 CDS AJMH02000044.1 287907 288788 3 + 882 Glycosyltransferase - none -
fig|6666666.229917.peg.1870 CDS AJMH02000044.1 288857 289666 2 + 810 Glucosyl-3-phosphoglycerate synthase (EC 2.4.1.266) - none -
fig|6666666.229917.peg.1871 CDS AJMH02000044.1 289668 290798 3 + 1131 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) Murein Hydrolases;
Peptidoglycan Biosynthesis
fig|6666666.229917.peg.1872 CDS AJMH02000044.1 290868 291935 3 + 1068 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229917.peg.1873 CDS AJMH02000044.1 292109 292885 2 + 777 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229917.peg.1874 CDS AJMH02000044.1 292886 293764 2 + 879 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229917.peg.1875 CDS AJMH02000044.1 293767 294306 1 + 540 dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) Capsular heptose biosynthesis;
Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229917.peg.1876 CDS AJMH02000044.1 295244 295870 2 + 627 Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40) Rhamnose containing glycans
fig|6666666.229917.peg.1877 CDS AJMH02000044.1 295867 296838 1 + 972 O antigen biosynthesis rhamnosyltransferase rfbN (EC 2.4.1.-) - none -
fig|6666666.229917.peg.1878 CDS AJMH02000044.1 296838 298094 3 + 1257 DNA for glycosyltransferase, lytic transglycosylase, dTDP-4-rhamnose reductase Rhamnose containing glycans
fig|6666666.229917.peg.1879 CDS AJMH02000044.1 298066 298758 1 + 693 NDP-hexose 4-ketoreductase UrdR - none -
fig|6666666.229917.peg.1880 CDS AJMH02000044.1 298745 300085 2 + 1341 membrane protein, related to Actinobacillus protein (1944168) - none -
fig|6666666.229917.peg.1881 CDS AJMH02000044.1 300465 301169 3 + 705 Glycosyltransferase involved in cell wall biogenesis (EC 2.4.-.-) - none -
fig|6666666.229917.peg.1882 CDS AJMH02000044.1 301542 302411 3 + 870 Alpha-L-Rha alpha-1,3-L-rhamnosyltransferase (EC 2.4.1.-) Rhamnose containing glycans
fig|6666666.229917.peg.1883 CDS AJMH02000044.1 302421 303377 3 + 957 O antigen biosynthesis rhamnosyltransferase rfbN (EC 2.4.1.-) - none -
fig|6666666.229917.peg.1884 CDS AJMH02000044.1 303340 304758 1 + 1419 Undecaprenyl-phosphate galactosephosphotransferase (EC 2.7.8.6) - none -
fig|6666666.229917.peg.1885 CDS AJMH02000044.1 305030 305155 2 + 126 hypothetical protein - none -
fig|6666666.229917.peg.1886 CDS AJMH02000044.1 305299 306102 1 + 804 Exodeoxyribonuclease III (EC 3.1.11.2) DNA repair, bacterial
fig|6666666.229917.peg.1887 CDS AJMH02000044.1 306102 306896 3 + 795 DNA for glycosyltransferase, lytic transglycosylase, dTDP-4-rhamnose reductase Rhamnose containing glycans
fig|6666666.229917.peg.1888 CDS AJMH02000044.1 306921 307463 3 + 543 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229917.peg.1889 CDS AJMH02000044.1 307424 307927 2 + 504 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229917.peg.1890 CDS AJMH02000044.1 308829 308089 -3 - 741 FIG00698611: hypothetical protein - none -
fig|6666666.229917.peg.1891 CDS AJMH02000044.1 309761 309108 -2 - 654 GTP cyclohydrolase II (EC 3.5.4.25) Molybdenum cofactor biosynthesis;
Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster
fig|6666666.229917.peg.1892 CDS AJMH02000044.1 309844 310578 1 + 735 Phosphatidylglycerophosphatase B (EC 3.1.3.27) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Osmotic stress cluster
fig|6666666.229917.peg.1893 CDS AJMH02000044.1 310629 311543 3 + 915 ROK family Glucokinase with ambiguous substrate specificity - none -
fig|6666666.229917.peg.1894 CDS AJMH02000044.1 312184 311600 -1 - 585 Putative lipoprotein yceB precursor - none -
fig|6666666.229917.peg.1895 CDS AJMH02000044.1 312347 312907 2 + 561 unknown - none -
fig|6666666.229917.peg.1896 CDS AJMH02000044.1 312928 313713 1 + 786 serine/threonine protein kinase - none -
fig|6666666.229917.peg.1897 CDS AJMH02000044.1 313710 313838 3 + 129 hypothetical protein - none -
fig|6666666.229917.peg.1898 CDS AJMH02000044.1 314868 314002 -3 - 867 Acyl-CoA thioesterase II (EC 3.1.2.-) Acyl-CoA thioesterase II
fig|6666666.229917.peg.1899 CDS AJMH02000044.1 316865 315132 -2 - 1734 Transport ATP-binding protein CydC Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229917.peg.1900 CDS AJMH02000044.1 318628 316865 -1 - 1764 Transport ATP-binding protein CydD Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229917.peg.1901 CDS AJMH02000044.1 319687 318734 -1 - 954 Thioredoxin reductase (EC 1.8.1.9) Thioredoxin-disulfide reductase;
pyrimidine conversions
fig|6666666.229917.peg.1902 CDS AJMH02000044.1 320604 319747 -3 - 858 FIG000875: Thioredoxin domain-containing protein EC-YbbN - none -
fig|6666666.229917.peg.1903 CDS AJMH02000044.1 321832 321014 -1 - 819 Aldose 1-epimerase - none -
fig|6666666.229917.peg.1904 CDS AJMH02000044.1 321908 323845 2 + 1938 DinG family ATP-dependent helicase YoaA DNA repair, bacterial DinG and relatives
fig|6666666.229917.peg.1905 CDS AJMH02000044.1 323848 324570 1 + 723 TsaB protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Ribosome biogenesis bacterial;
YgjD and YeaZ;
YjeE;
YrdC-YciO-Sua5 protein family
fig|6666666.229917.peg.1906 CDS AJMH02000044.1 324602 325159 2 + 558 Starvation lipoprotein Slp paralog Carbon Starvation
fig|6666666.229917.peg.1907 CDS AJMH02000044.1 325202 326878 2 + 1677 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) Biotin biosynthesis;
Biotin synthesis cluster
fig|6666666.229917.peg.1908 CDS AJMH02000044.1 326961 328118 3 + 1158 Ribonuclease D (EC 3.1.26.3) tRNA processing
fig|6666666.229917.peg.1909 CDS AJMH02000044.1 329588 328206 -2 - 1383 Cytochrome c551 peroxidase (EC 1.11.1.5) Protection from Reactive Oxygen Species
fig|6666666.229917.peg.1910 CDS AJMH02000044.1 331390 332211 1 + 822 probable glucanotransferase (endo alpha-1,4 polygalactosaminidase related protein) - none -
fig|6666666.229917.peg.1911 CDS AJMH02000044.1 332733 333659 3 + 927 Putative stomatin/prohibitin-family membrane protease subunit YbbK - none -
fig|6666666.229917.peg.1912 CDS AJMH02000044.1 333683 334129 2 + 447 Putative activity regulator of membrane protease YbbK - none -
fig|6666666.229917.peg.1913 CDS AJMH02000044.1 334138 334749 1 + 612 NAD(P)H oxidoreductase YRKL (EC 1.6.99.-) @ Putative NADPH-quinone reductase (modulator of drug activity B) @ Flavodoxin 2 Flavodoxin;
Flavodoxin
fig|6666666.229917.peg.1914 CDS AJMH02000044.1 334749 335312 3 + 564 Putative oxidoreductase component of anaerobic dehydrogenases; Functional role page for Chaperone protein TorD - none -
fig|6666666.229917.peg.1915 CDS AJMH02000044.1 336305 335370 -2 - 936 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) KDO2-Lipid A biosynthesis
fig|6666666.229917.peg.1916 CDS AJMH02000044.1 336419 337849 2 + 1431 ADP-heptose synthase (EC 2.7.-.-) / D-glycero-beta-D-manno-heptose 7-phosphate kinase LOS core oligosaccharide biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.229917.peg.1917 CDS AJMH02000044.1 338273 337893 -2 - 381 Cysteine desulfurase CsdA-CsdE, sulfur acceptor protein CsdE - none -
fig|6666666.229917.peg.1918 CDS AJMH02000044.1 339466 338270 -1 - 1197 Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA Alanine biosynthesis;
mnm5U34 biosynthesis bacteria;
tRNA modification Archaea
fig|6666666.229917.peg.1919 CDS AJMH02000044.1 339972 339472 -3 - 501 Micrococcal nuclease (thermonuclease) homologs - none -
fig|6666666.229917.peg.1920 CDS AJMH02000044.1 340442 340801 2 + 360 Antiholin-like protein LrgA Murein hydrolase regulation and cell death
fig|6666666.229917.peg.1921 CDS AJMH02000044.1 340801 341493 1 + 693 LrgA-associated membrane protein LrgB Murein hydrolase regulation and cell death
fig|6666666.229917.peg.1922 CDS AJMH02000044.1 341495 342847 2 + 1353 Putative dNTP triphosphohydrolase, associated with nucleotidase YfbR Purine conversions;
dNTP triphosphohydrolase protein family
fig|6666666.229917.peg.1923 CDS AJMH02000044.1 342889 344832 1 + 1944 ABC transporter ATP-binding protein - none -
fig|6666666.229917.peg.1924 CDS AJMH02000044.1 345093 346091 3 + 999 FIG00781545: hypothetical protein - none -
fig|6666666.229917.peg.1925 CDS AJMH02000044.1 346322 346591 2 + 270 Putative sugar phosphotransferase component II B - none -
fig|6666666.229917.peg.1926 CDS AJMH02000044.1 346608 346745 3 + 138 FIG00732228: membrane protein - none -
fig|6666666.229917.peg.1927 CDS AJMH02000044.1 346754 347962 2 + 1209 FIG00732228: membrane protein - none -
fig|6666666.229917.peg.1928 CDS AJMH02000044.1 347972 348796 2 + 825 Transketolase, N-terminal section (EC 2.2.1.1) Pentose phosphate pathway
fig|6666666.229917.peg.1929 CDS AJMH02000044.1 348786 349730 3 + 945 Transketolase, C-terminal section (EC 2.2.1.1) Pentose phosphate pathway
fig|6666666.229917.peg.1930 CDS AJMH02000044.1 350847 349897 -3 - 951 Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p YrdC-YciO-Sua5 protein family
fig|6666666.229917.peg.1931 CDS AJMH02000044.1 350910 351416 3 + 507 FIG001674: hypothetical protein - none -
fig|6666666.229917.peg.1932 CDS AJMH02000044.1 353554 351413 -1 - 2142 Putative efflux (PET) family inner membrane protein YccS CBSS-83333.1.peg.946
fig|6666666.229917.peg.1933 CDS AJMH02000044.1 354036 353563 -3 - 474 Inner membrane protein YccF CBSS-83333.1.peg.946
fig|6666666.229917.peg.1934 CDS AJMH02000044.1 354486 354097 -3 - 390 Methylglyoxal synthase (EC 4.2.3.3) CBSS-83333.1.peg.946;
Methylglyoxal Metabolism
fig|6666666.229917.peg.1935 CDS AJMH02000044.1 355223 354549 -2 - 675 UPF0319 protein YccT precursor CBSS-83333.1.peg.946
fig|6666666.229917.peg.1936 CDS AJMH02000044.1 355368 355640 3 + 273 Acylphosphate phosphohydrolase (EC 3.6.1.7), putative Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229917.peg.1937 CDS AJMH02000044.1 356463 355615 -3 - 849 Manganese ABC transporter, inner membrane permease protein SitD - none -
fig|6666666.229917.peg.1938 CDS AJMH02000044.1 357317 356460 -2 - 858 Manganese ABC transporter, inner membrane permease protein SitC - none -
fig|6666666.229917.peg.1939 CDS AJMH02000044.1 358207 357317 -1 - 891 Manganese ABC transporter, ATP-binding protein SitB - none -
fig|6666666.229917.peg.1940 CDS AJMH02000044.1 359088 358207 -3 - 882 Manganese ABC transporter, periplasmic-binding protein SitA - none -
fig|6666666.229917.peg.1941 CDS AJMH02000044.1 359582 359187 -2 - 396 tRNA 2-thiouridine synthesizing protein E (EC 2.8.1.-) CBSS-326442.4.peg.1852;
Lipoic acid synthesis cluster;
Sulfite reduction-associated complex DsrMKJOP and co-clustering genes
fig|6666666.229917.peg.1942 CDS AJMH02000044.1 360264 359602 -3 - 663 Putative TEGT family carrier/transport protein CBSS-326442.4.peg.1852
fig|6666666.229917.peg.1943 CDS AJMH02000044.1 360421 360275 -1 - 147 hypothetical protein - none -
fig|6666666.229917.peg.1944 CDS AJMH02000044.1 360818 360997 2 + 180 CRISPR-associated helicase Cas3 CRISPRs
fig|6666666.229917.peg.1945 CDS AJMH02000044.1 361094 362443 2 + 1350 Type III restriction-modification system methylation subunit (EC 2.1.1.72) Restriction-Modification System
fig|6666666.229917.peg.1946 CDS AJMH02000044.1 362982 363299 3 + 318 helicase (Snf2/Rad54 family) - none -
fig|6666666.229917.peg.1947 CDS AJMH02000044.1 363318 363950 3 + 633 Superfamily II DNA/RNA helicases, SNF2 family - none -
fig|6666666.229917.peg.1948 CDS AJMH02000044.1 366553 364280 -1 - 2274 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) Methionine Biosynthesis
fig|6666666.229917.peg.1949 CDS AJMH02000044.1 366853 367785 1 + 933 Transcriptional activator MetR LysR-family proteins in Escherichia coli;
LysR-family proteins in Salmonella enterica Typhimurium;
Methionine Biosynthesis
fig|6666666.229917.peg.1950 CDS AJMH02000044.1 367790 368518 2 + 729 Branched-chain amino acid transport protein AzlC - none -
fig|6666666.229917.peg.1951 CDS AJMH02000044.1 368519 368851 2 + 333 Branched-chain amino acid transport protein azlD - none -
fig|6666666.229917.peg.1952 CDS AJMH02000044.1 371692 368918 -1 - 2775 Probable zinc protease pqqL (EC 3.4.99.-) - none -
fig|6666666.229917.peg.1953 CDS AJMH02000044.1 374136 371770 -3 - 2367 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229917.peg.1954 CDS AJMH02000044.1 374429 375322 2 + 894 Membrane protein LAPB - none -
fig|6666666.229917.peg.1955 CDS AJMH02000044.1 375315 375992 3 + 678 Cytidylate kinase (EC 2.7.4.25) pyrimidine conversions
fig|6666666.229917.peg.1956 CDS AJMH02000044.1 376090 377736 1 + 1647 SSU ribosomal protein S1p Cell division-ribosomal stress proteins cluster;
Ribosome SSU bacterial
fig|6666666.229917.peg.1957 CDS AJMH02000044.1 377798 378085 2 + 288 Integration host factor beta subunit DNA structural proteins, bacterial
fig|6666666.229917.peg.1958 CDS AJMH02000044.1 378184 378480 1 + 297 Inner membrane protein yciS - none -
fig|6666666.229917.peg.1959 CDS AJMH02000044.1 378534 379670 3 + 1137 Heat shock (predicted periplasmic) protein YciM, precursor Osmotic stress cluster
fig|6666666.229917.peg.1960 CDS AJMH02000044.1 379700 380392 2 + 693 Orotidine 5@1-phosphate decarboxylase (EC 4.1.1.23) De Novo Pyrimidine Synthesis;
Riboflavin synthesis cluster
fig|6666666.229917.peg.1961 CDS AJMH02000044.1 380398 380715 1 + 318 Translation initiation factor SUI1-related protein Translation initiation factors bacterial
fig|6666666.229917.peg.1962 CDS AJMH02000044.1 381099 380749 -3 - 351 FIG00782386: hypothetical protein - none -
fig|6666666.229917.peg.1963 CDS AJMH02000044.1 383830 381167 -1 - 2664 DNA gyrase subunit A (EC 5.99.1.3) Cell Division Subsystem including YidCD;
DNA gyrase subunits;
DNA replication cluster 1;
DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.229917.peg.1964 CDS AJMH02000044.1 384438 383998 -3 - 441 Ferric uptake regulation protein FUR Bacterial RNA-metabolizing Zn-dependent hydrolases;
Oxidative stress
fig|6666666.229917.peg.1965 CDS AJMH02000044.1 384981 384457 -3 - 525 Flavodoxin 1 Flavodoxin
fig|6666666.229917.peg.1966 CDS AJMH02000044.1 386201 385401 -2 - 801 Esterase ybfF (EC 3.1.-.-) - none -
fig|6666666.229917.peg.1967 CDS AJMH02000044.1 386288 386905 2 + 618 SeqA protein, negative modulator of initiation of replication - none -
fig|6666666.229917.peg.1968 CDS AJMH02000044.1 386911 388326 1 + 1416 O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229917.peg.1969 CDS AJMH02000044.1 390486 391643 3 + 1158 Potassium efflux system KefA protein / Small-conductance mechanosensitive channel Potassium homeostasis
fig|6666666.229917.peg.1970 CDS AJMH02000044.1 391665 392738 3 + 1074 Chorismate synthase (EC 4.2.3.5) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229917.peg.1971 CDS AJMH02000044.1 392760 393632 3 + 873 Murein endopeptidase - none -
fig|6666666.229917.peg.1972 CDS AJMH02000044.1 393636 394403 3 + 768 Putative membrane protein YfcA - none -
fig|6666666.229917.peg.1973 CDS AJMH02000044.1 394519 395475 1 + 957 Lipid A biosynthesis (KDO) 2-(lauroyl)-lipid IVA acyltransferase (EC 2.3.1.-) KDO2-Lipid A biosynthesis
fig|6666666.229917.peg.1974 CDS AJMH02000044.1 395497 396108 1 + 612 Adenine phosphoribosyltransferase (EC 2.4.2.7) Purine conversions;
cAMP signaling in bacteria
fig|6666666.229917.peg.1975 CDS AJMH02000044.1 396141 398186 3 + 2046 DNA polymerase III subunits gamma and tau (EC 2.7.7.7) DNA processing cluster
fig|6666666.229917.peg.1976 CDS AJMH02000044.1 398189 399079 2 + 891 hypothetical protein - none -
fig|6666666.229917.peg.1977 CDS AJMH02000044.1 399223 400176 1 + 954 Glycosyltransferase - none -
fig|6666666.229917.peg.1978 CDS AJMH02000044.1 400826 401698 2 + 873 hypothetical protein - none -
fig|6666666.229917.peg.1979 CDS AJMH02000044.1 402093 401740 -3 - 354 Bona fide RidA/YjgF/TdcF/RutC subgroup - none -
fig|6666666.229917.peg.1980 CDS AJMH02000044.1 402234 402911 3 + 678 FIG00904286: hypothetical protein - none -
fig|6666666.229917.peg.1981 CDS AJMH02000044.1 402917 403627 2 + 711 hypothetical protein - none -
fig|6666666.229917.peg.1982 CDS AJMH02000044.1 404289 403678 -3 - 612 Glutathione S-transferase (EC 2.5.1.18) Glutathione: Non-redox reactions
fig|6666666.229917.peg.1983 CDS AJMH02000044.1 406828 404573 -1 - 2256 Topoisomerase IV subunit A (EC 5.99.1.-) DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.229917.peg.1984 CDS AJMH02000044.1 409318 407420 -1 - 1899 Topoisomerase IV subunit B (EC 5.99.1.-) DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.229917.peg.1985 CDS AJMH02000044.1 2144 2004 -2 - 141 hypothetical protein - none -
fig|6666666.229917.peg.1986 CDS AJMH02000044.1 6181 6321 1 + 141 hypothetical protein - none -
fig|6666666.229917.peg.1987 CDS AJMH02000044.1 7131 7568 3 + 438 Single-stranded DNA-binding protein DNA repair, bacterial;
DNA repair, bacterial RecFOR pathway
fig|6666666.229917.peg.1988 CDS AJMH02000044.1 7593 8240 3 + 648 Bores hole in peptidoglycan layer allowing type IV secretion complex assembly to occur (VirB1) - none -
fig|6666666.229917.peg.1989 CDS AJMH02000044.1 8744 8878 2 + 135 hypothetical protein - none -
fig|6666666.229917.peg.1990 CDS AJMH02000044.1 8903 9544 2 + 642 Chromosome (plasmid) partitioning protein ParA Bacterial Cell Division;
Bacterial Cytoskeleton;
Cell Division Subsystem including YidCD;
RNA modification and chromosome partitioning cluster
fig|6666666.229917.peg.1991 CDS AJMH02000044.1 9537 9776 3 + 240 hypothetical protein - none -
fig|6666666.229917.peg.1992 CDS AJMH02000044.1 9829 10110 1 + 282 filamentation induced by cAMP protein Fic-like protein - none -
fig|6666666.229917.peg.1993 CDS AJMH02000044.1 10744 10277 -1 - 468 Type II secretory pathway, component PulJ - none -
fig|6666666.229917.peg.1994 CDS AJMH02000044.1 11821 11354 -1 - 468 18K peptidoglycan-associated outer membrane lipoprotein; Peptidoglycan-associated lipoprotein precursor; Outer membrane protein P6; OmpA/MotB precursor Ton and Tol transport systems
fig|6666666.229917.peg.1995 CDS AJMH02000044.1 13116 11836 -3 - 1281 tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins Ton and Tol transport systems
fig|6666666.229917.peg.1996 CDS AJMH02000044.1 14359 13151 -1 - 1209 TolA protein Ton and Tol transport systems
fig|6666666.229917.peg.1997 CDS AJMH02000044.1 14798 14376 -2 - 423 Tol biopolymer transport system, TolR protein Ton and Tol transport systems
fig|6666666.229917.peg.1998 CDS AJMH02000044.1 15573 14884 -3 - 690 MotA/TolQ/ExbB proton channel family protein Ton and Tol transport systems
fig|6666666.229917.peg.1999 CDS AJMH02000044.1 16007 15603 -2 - 405 4-hydroxybenzoyl-CoA thioesterase family active site Ton and Tol transport systems
fig|6666666.229917.peg.2000 CDS AJMH02000044.1 17652 16516 -3 - 1137 Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229917.peg.2001 CDS AJMH02000044.1 19136 17667 -2 - 1470 Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229917.peg.2002 CDS AJMH02000044.1 19684 19995 1 + 312 Chromosome segregation ATPases - none -
fig|6666666.229917.peg.2003 CDS AJMH02000044.1 21068 20049 -2 - 1020 Holliday junction DNA helicase RuvB RuvABC plus a hypothetical
fig|6666666.229917.peg.2004 CDS AJMH02000044.1 21691 21077 -1 - 615 Holliday junction DNA helicase RuvA RuvABC plus a hypothetical
fig|6666666.229917.peg.2005 CDS AJMH02000044.1 22327 21755 -1 - 573 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) RuvABC plus a hypothetical
fig|6666666.229917.peg.2006 CDS AJMH02000044.1 22793 22383 -2 - 411 excinuclease ABC subunit A - none -
fig|6666666.229917.peg.2007 CDS AJMH02000044.1 23545 22805 -1 - 741 FIG000859: hypothetical protein YebC Riboflavin, FMN and FAD metabolism in plants;
RuvABC plus a hypothetical
fig|6666666.229917.peg.2008 CDS AJMH02000044.1 23950 23579 -1 - 372 Dihydroneopterin triphosphate pyrophosphohydrolase type 2 (nudB) Folate Biosynthesis
fig|6666666.229917.peg.2009 CDS AJMH02000044.1 25399 24131 -1 - 1269 Mn2+ and Fe2+ transporters of the NRAMP family - none -
fig|6666666.229917.peg.2010 CDS AJMH02000044.1 25617 25757 3 + 141 hypothetical protein - none -
fig|6666666.229917.peg.2011 CDS AJMH02000044.1 27569 25791 -2 - 1779 Aspartyl-tRNA synthetase (EC 6.1.1.12) tRNA aminoacylation, Asp and Asn
fig|6666666.229917.peg.2012 CDS AJMH02000044.1 28026 28304 3 + 279 membrane protein, putative - none -
fig|6666666.229917.peg.2013 CDS AJMH02000044.1 28376 29101 2 + 726 tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229917.peg.2014 CDS AJMH02000044.1 31748 29181 -2 - 2568 FIG00362583: hypothetical protein - none -
fig|6666666.229917.peg.2015 CDS AJMH02000044.1 33222 31891 -3 - 1332 Glycerol-3-phosphate transporter - none -
fig|6666666.229917.peg.2016 CDS AJMH02000044.1 33623 35575 2 + 1953 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229917.peg.2017 CDS AJMH02000044.1 35734 36141 1 + 408 Lactoylglutathione lyase (EC 4.4.1.5) Glutathione: Non-redox reactions;
Methylglyoxal Metabolism
fig|6666666.229917.peg.2018 CDS AJMH02000044.1 36228 36881 3 + 654 Ribonuclease T (EC 3.1.13.-) tRNA processing
fig|6666666.229917.peg.2019 CDS AJMH02000044.1 37233 38585 3 + 1353 Histidine permease YuiF - none -
fig|6666666.229917.peg.2020 CDS AJMH02000044.1 38649 39215 3 + 567 Primosomal replication protein N@1@1 - none -
fig|6666666.229917.peg.2021 CDS AJMH02000044.1 40696 39272 -1 - 1425 tRNA-i(6)A37 methylthiotransferase Methylthiotransferases;
tRNA-methylthiotransferase containing cluster;
tRNA modification Archaea;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229917.peg.2022 CDS AJMH02000044.1 40804 40932 1 + 129 hypothetical protein - none -
fig|6666666.229917.peg.2023 CDS AJMH02000044.1 41040 41183 3 + 144 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-) CBSS-87626.3.peg.3639;
Ubiquinone Biosynthesis
fig|6666666.229917.peg.2024 CDS AJMH02000044.1 42628 41897 -1 - 732 FIG053235: Diacylglucosamine hydrolase like Llipid A biosynthesis cluster
fig|6666666.229917.peg.2025 CDS AJMH02000044.1 43601 42630 -2 - 972 Octaprenyl diphosphate synthase (EC 2.5.1.90) Isoprenoinds for Quinones;
Polyprenyl Diphosphate Biosynthesis
fig|6666666.229917.peg.2026 CDS AJMH02000044.1 43867 44178 1 + 312 LSU ribosomal protein L21p CBSS-176279.3.peg.868;
Ribosome LSU bacterial
fig|6666666.229917.peg.2027 CDS AJMH02000044.1 44199 44456 3 + 258 LSU ribosomal protein L27p CBSS-176279.3.peg.868;
Ribosome LSU bacterial
fig|6666666.229917.peg.2028 CDS AJMH02000044.1 44528 45460 2 + 933 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229917.peg.2029 CDS AJMH02000044.1 45538 46455 1 + 918 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229917.peg.2030 CDS AJMH02000044.1 46492 47673 1 + 1182 GTP-binding protein Obg CBSS-176279.3.peg.868
fig|6666666.229917.peg.2031 CDS AJMH02000044.1 47789 47670 -2 - 120 tmRNA-binding protein SmpB Heat shock dnaK gene cluster extended;
Translation termination factors bacterial
fig|6666666.229917.peg.2032 CDS AJMH02000044.1 48223 47741 -1 - 483 tmRNA-binding protein SmpB Heat shock dnaK gene cluster extended;
Translation termination factors bacterial
fig|6666666.229917.peg.2033 CDS AJMH02000044.1 48568 48431 -1 - 138 hypothetical protein - none -
fig|6666666.229917.peg.2034 CDS AJMH02000044.1 48591 50216 3 + 1626 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229917.peg.2035 CDS AJMH02000044.1 50317 51237 1 + 921 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229917.peg.2036 CDS AJMH02000044.1 51659 52165 2 + 507 Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229917.peg.2037 CDS AJMH02000044.1 52175 53158 2 + 984 Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229917.peg.2038 CDS AJMH02000044.1 53155 54153 1 + 999 Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229917.peg.2039 CDS AJMH02000044.1 54967 54260 -1 - 708 Aerobic respiration control protein arcA - none -
fig|6666666.229917.peg.2040 CDS AJMH02000044.1 55369 55229 -1 - 141 LSU ribosomal protein L36p Ribosome LSU bacterial
fig|6666666.229917.peg.2041 CDS AJMH02000044.1 55645 55379 -1 - 267 LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-independent Ribosome LSU bacterial;
Ribosome LSU bacterial
fig|6666666.229917.peg.2042 CDS AJMH02000044.1 56426 55857 -2 - 570 Lysine decarboxylase family - none -
fig|6666666.229917.peg.2043 CDS AJMH02000044.1 56569 58359 1 + 1791 Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8) Biogenesis of c-type cytochromes;
Periplasmic disulfide interchange
fig|6666666.229917.peg.2044 CDS AJMH02000044.1 58461 58348 -3 - 114 hypothetical protein - none -
fig|6666666.229917.peg.2045 CDS AJMH02000044.1 58439 58828 2 + 390 INTEGRAL MEMBRANE PROTEIN (Rhomboid family) - none -
fig|6666666.229917.peg.2046 CDS AJMH02000044.1 62117 59226 -2 - 2892 Ribonuclease E (EC 3.1.26.12) RNA processing and degradation, bacterial;
Ribosome biogenesis bacterial
fig|6666666.229917.peg.2047 CDS AJMH02000044.1 62351 62473 2 + 123 hypothetical protein - none -
fig|6666666.229917.peg.2048 CDS AJMH02000044.1 62583 63542 3 + 960 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) RNA pseudouridine syntheses;
Ribosome biogenesis bacterial
fig|6666666.229917.peg.2049 CDS AJMH02000044.1 63956 63741 -2 - 216 Thioredoxin - none -
fig|6666666.229917.peg.2050 CDS AJMH02000044.1 65159 64164 -2 - 996 D-lactate dehydrogenase (EC 1.1.1.28) Fermentations: Lactate;
Fermentations: Mixed acid
fig|6666666.229917.peg.2051 CDS AJMH02000044.1 66313 65183 -1 - 1131 Cystathionine gamma-synthase (EC 2.5.1.48) Methionine Biosynthesis
fig|6666666.229917.peg.2052 CDS AJMH02000044.1 67293 68111 3 + 819 Peptidoglycan hydrolase VirB1, involved in T-DNA transfer - none -
fig|6666666.229917.peg.2053 CDS AJMH02000044.1 68111 68998 2 + 888 Forms the bulk of type IV secretion complex that spans outer membrane and periplasm (VirB9) - none -
fig|6666666.229917.peg.2054 CDS AJMH02000044.1 69009 70280 3 + 1272 Inner membrane protein forms channel for type IV secretion of T-DNA complex (VirB10) - none -
fig|6666666.229917.peg.2055 CDS AJMH02000044.1 70280 71335 2 + 1056 ATPase required for both assembly of type IV secretion complex and secretion of T-DNA complex, VirB11 - none -
fig|6666666.229917.peg.2056 CDS AJMH02000044.1 71337 71462 3 + 126 hypothetical protein - none -
fig|6666666.229917.peg.2057 CDS AJMH02000044.1 73421 73597 2 + 177 hypothetical protein - none -
fig|6666666.229917.peg.2058 CDS AJMH02000044.1 74502 74861 3 + 360 hypothetical protein - none -
fig|6666666.229917.peg.2059 CDS AJMH02000044.1 76840 75695 -1 - 1146 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) Proline Synthesis
fig|6666666.229917.peg.2060 CDS AJMH02000044.1 77622 76963 -3 - 660 putative membrane protein - none -
fig|6666666.229917.peg.2061 CDS AJMH02000044.1 77819 77703 -2 - 117 hypothetical protein - none -
fig|6666666.229917.peg.2062 CDS AJMH02000044.1 77834 78640 2 + 807 Permeases of the drug/metabolite transporter (DMT) superfamily - none -
fig|6666666.229917.peg.2063 CDS AJMH02000044.1 79911 78904 -3 - 1008 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) Cluster Ytf and putative sugar transporter;
Glycolysis and Gluconeogenesis;
Putative sugar ABC transporter (ytf cluster)
fig|6666666.229917.peg.2064 CDS AJMH02000044.1 80069 81442 2 + 1374 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (EC 6.3.2.-) Peptidoglycan biosynthesis--gjo;
Recycling of Peptidoglycan Amino Acids
fig|6666666.229917.peg.2065 CDS AJMH02000044.1 81822 82940 3 + 1119 Membrane-bound lytic murein transglycosylase A precursor (EC 3.2.1.-) Murein Hydrolases
fig|6666666.229917.peg.2066 CDS AJMH02000044.1 82940 83710 2 + 771 HesA/MoeB/ThiF family protein related to EC-YgdL - none -
fig|6666666.229917.peg.2067 CDS AJMH02000044.1 83810 84829 2 + 1020 Zinc ABC transporter, periplasmic-binding protein ZnuA - none -
fig|6666666.229917.peg.2068 CDS AJMH02000044.1 84957 85769 3 + 813 Outer membrane lipoprotein e (P4) / NMN 5@1-nucleotidase, extracellular (EC 3.1.3.5) NAD and NADP cofactor biosynthesis global
fig|6666666.229917.peg.2069 CDS AJMH02000044.1 86340 85849 -3 - 492 FIG001943: hypothetical protein YajQ Broadly distributed proteins not in subsystems
fig|6666666.229917.peg.2070 CDS AJMH02000044.1 87295 86351 -1 - 945 Phosphoserine phosphatase (EC 3.1.3.3) Glycine and Serine Utilization;
Serine Biosynthesis;
Serine Biosynthesis
fig|6666666.229917.peg.2071 CDS AJMH02000044.1 87371 88048 2 + 678 Lipoate-protein ligase A Lipoic acid metabolism
fig|6666666.229917.peg.2072 CDS AJMH02000044.1 88124 88005 -2 - 120 hypothetical protein - none -
fig|6666666.229917.peg.2073 CDS AJMH02000044.1 88421 88158 -2 - 264 SSU ribosomal protein S20p Ribosome SSU bacterial
fig|6666666.229917.peg.2074 CDS AJMH02000044.1 88689 90266 3 + 1578 Proposed peptidoglycan lipid II flippase MurJ Peptidoglycan lipid II flippase
fig|6666666.229917.peg.2075 CDS AJMH02000044.1 90344 91270 2 + 927 Riboflavin kinase (EC 2.7.1.26) / FMN adenylyltransferase (EC 2.7.7.2) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin, FMN and FAD metabolism in plants;
riboflavin to FAD;
riboflavin to FAD
fig|6666666.229917.peg.2076 CDS AJMH02000044.1 91484 91648 2 + 165 FIG01055344: hypothetical protein - none -
fig|6666666.229917.peg.2077 CDS AJMH02000044.1 91686 94508 3 + 2823 Isoleucyl-tRNA synthetase (EC 6.1.1.5) tRNA aminoacylation, Ile
fig|6666666.229917.peg.2078 CDS AJMH02000044.1 94588 95082 1 + 495 Lipoprotein signal peptidase (EC 3.4.23.36) Lipoprotein Biosynthesis;
Signal peptidase
fig|6666666.229917.peg.2079 CDS AJMH02000044.1 95082 96026 3 + 945 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.229917.peg.2080 CDS AJMH02000044.1 97789 96491 -1 - 1299 Cell division trigger factor (EC 5.2.1.8) Bacterial Cell Division
fig|6666666.229917.peg.2081 CDS AJMH02000044.1 98846 97953 -2 - 894 Tyrosine recombinase XerD - none -
fig|6666666.229917.peg.2082 CDS AJMH02000044.1 100009 98849 -1 - 1161 Probable 3-phenylpropionic acid transporter - none -
fig|6666666.229917.peg.2083 CDS AJMH02000044.1 100269 100009 -3 - 261 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) A Hypothetical Protein Related to Proline Metabolism;
CBSS-630.2.peg.3360;
Proline Synthesis
fig|6666666.229917.peg.2084 CDS AJMH02000044.1 100712 100254 -2 - 459 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) A Hypothetical Protein Related to Proline Metabolism;
CBSS-630.2.peg.3360;
Proline Synthesis
fig|6666666.229917.peg.2085 CDS AJMH02000044.1 100775 101680 2 + 906 DNA recombination-dependent growth factor C DNA repair, bacterial
fig|6666666.229917.peg.2086 CDS AJMH02000044.1 102094 101771 -1 - 324 opacity associated protein - none -
fig|6666666.229917.peg.2087 CDS AJMH02000044.1 103520 102207 -2 - 1314 Cell envelope opacity-associated protein A - none -
fig|6666666.229917.peg.2088 CDS AJMH02000044.1 104723 103692 -2 - 1032 Lysyl-lysine 2,3-aminomutase Translation elongation factor P lysylation
fig|6666666.229917.peg.2089 CDS AJMH02000044.1 104788 105309 1 + 522 Translation elongation factor P Translation elongation factor P lysylation
fig|6666666.229917.peg.2090 CDS AJMH02000044.1 105639 107015 3 + 1377 Tryptophanase (EC 4.1.99.1) - none -
fig|6666666.229917.peg.2091 CDS AJMH02000044.1 107177 108391 2 + 1215 Tyrosine-specific transport protein - none -
fig|6666666.229917.peg.2092 CDS AJMH02000044.1 109134 108457 -3 - 678 YheO-like PAS domain - none -
fig|6666666.229917.peg.2093 CDS AJMH02000044.1 109703 109197 -2 - 507 Arabinose efflux permease - none -
fig|6666666.229917.peg.2094 CDS AJMH02000044.1 110427 109696 -3 - 732 UDP-2,3-diacylglucosamine diphosphatase (EC 3.6.1.54) KDO2-Lipid A biosynthesis;
Llipid A biosynthesis cluster
fig|6666666.229917.peg.2095 CDS AJMH02000044.1 110538 111281 3 + 744 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229917.peg.2096 CDS AJMH02000044.1 111289 112701 1 + 1413 Putative cell division protein precursor - none -
fig|6666666.229917.peg.2097 CDS AJMH02000044.1 113635 112772 -1 - 864 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229917.peg.2098 CDS AJMH02000044.1 114517 113777 -1 - 741 Pyruvate formate-lyase activating enzyme (EC 1.97.1.4) Fermentations: Mixed acid
fig|6666666.229917.peg.2099 CDS AJMH02000044.1 116974 114662 -1 - 2313 Pyruvate formate-lyase (EC 2.3.1.54) Butanol Biosynthesis;
Fermentations: Mixed acid
fig|6666666.229917.peg.2100 CDS AJMH02000044.1 117924 117073 -3 - 852 Formate efflux transporter (TC 2.A.44 family) Fermentations: Mixed acid
fig|6666666.229917.peg.2101 CDS AJMH02000044.1 118237 118587 1 + 351 Bis(5@1-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17) pyrimidine conversions
fig|6666666.229917.peg.2102 CDS AJMH02000044.1 118588 118941 1 + 354 Predicted periplasmic lipoprotein - none -
fig|6666666.229917.peg.2103 CDS AJMH02000044.1 118943 119989 2 + 1047 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) Murein Hydrolases;
Recycling of Peptidoglycan Amino Sugars
fig|6666666.229917.peg.2104 CDS AJMH02000044.1 119991 121133 3 + 1143 23S rRNA (Uracil-5-) -methyltransferase rumB (EC 2.1.1.-) RNA methylation
fig|6666666.229917.peg.2105 CDS AJMH02000044.1 122198 121233 -2 - 966 6-phosphofructokinase (EC 2.7.1.11) D-Tagatose and Galactitol Utilization;
Glycolysis and Gluconeogenesis
fig|6666666.229917.peg.2106 CDS AJMH02000044.1 122820 122260 -3 - 561 Cobalt-zinc-cadmium resistance protein Cobalt-zinc-cadmium resistance
fig|6666666.229917.peg.2107 CDS AJMH02000044.1 123182 122844 -2 - 339 Cobalt-zinc-cadmium resistance protein Cobalt-zinc-cadmium resistance
fig|6666666.229917.peg.2108 CDS AJMH02000044.1 123748 123182 -1 - 567 FIG00696199: hypothetical protein - none -
fig|6666666.229917.peg.2109 CDS AJMH02000044.1 124529 123750 -2 - 780 UPF0246 protein YaaA - none -
fig|6666666.229917.peg.2110 CDS AJMH02000044.1 125099 124551 -2 - 549 Uracil-DNA glycosylase, family 1 DNA Repair Base Excision;
Uracil-DNA glycosylase
fig|6666666.229917.rna.1 RNA AJMH02000003.1 1580 41 -2 - 1540 Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA - none -
fig|6666666.229917.rna.2 RNA AJMH02000006.1 152 79 -2 - 74 tRNA-Pro-TGG - none -
fig|6666666.229917.rna.3 RNA AJMH02000006.1 230 158 -2 - 73 tRNA-His-GTG - none -
fig|6666666.229917.rna.4 RNA AJMH02000006.1 338 265 -2 - 74 tRNA-Arg-CCG - none -
fig|6666666.229917.rna.5 RNA AJMH02000006.1 50279 50351 2 + 73 tRNA-Asn-GTT - none -
fig|6666666.229917.rna.6 RNA AJMH02000008.1 89000 88917 -2 - 84 tRNA-Leu-CAG - none -
fig|6666666.229917.rna.7 RNA AJMH02000009.1 116 1 -2 - 116 5S RNA - none -
fig|6666666.229917.rna.8 RNA AJMH02000009.1 3418 376 -1 - 3043 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA - none -
fig|6666666.229917.rna.9 RNA AJMH02000010.1 101 220 2 + 120 5S RNA - none -
fig|6666666.229917.rna.10 RNA AJMH02000010.1 227 299 2 + 73 tRNA-Undet-??? - none -
fig|6666666.229917.rna.11 RNA AJMH02000010.1 337 409 1 + 73 tRNA-Trp-CCA - none -
fig|6666666.229917.rna.12 RNA AJMH02000010.1 19042 18956 -1 - 87 tRNA-Ser-GGA - none -
fig|6666666.229917.rna.13 RNA AJMH02000013.1 33602 33674 2 + 73 tRNA-Gly-GCC - none -
fig|6666666.229917.rna.14 RNA AJMH02000015.1 78158 78085 -2 - 74 tRNA-Arg-ACG - none -
fig|6666666.229917.rna.15 RNA AJMH02000015.1 78289 78216 -1 - 74 tRNA-Arg-ACG - none -
fig|6666666.229917.rna.16 RNA AJMH02000015.1 78400 78310 -1 - 91 tRNA-Ser-GCT - none -
fig|6666666.229917.rna.17 RNA AJMH02000016.1 20893 20966 1 + 74 tRNA-Met-CAT - none -
fig|6666666.229917.rna.18 RNA AJMH02000016.1 49879 49951 1 + 73 tRNA-Thr-TGT - none -
fig|6666666.229917.rna.19 RNA AJMH02000016.1 49985 50066 2 + 82 tRNA-Tyr-GTA - none -
fig|6666666.229917.rna.20 RNA AJMH02000016.1 50110 50181 1 + 72 tRNA-Gly-TCC - none -
fig|6666666.229917.rna.21 RNA AJMH02000016.1 50188 50260 1 + 73 tRNA-Thr-GGT - none -
fig|6666666.229917.rna.22 RNA AJMH02000019.1 97941 97869 -3 - 73 tRNA-Val-TAC - none -
fig|6666666.229917.rna.23 RNA AJMH02000019.1 98044 97972 -1 - 73 tRNA-Val-TAC - none -
fig|6666666.229917.rna.24 RNA AJMH02000019.1 98158 98086 -1 - 73 tRNA-Val-TAC - none -
fig|6666666.229917.rna.25 RNA AJMH02000019.1 99968 100040 2 + 73 tRNA-Ala-GGC - none -
fig|6666666.229917.rna.26 RNA AJMH02000020.1 767 685 -2 - 83 tRNA-Leu-GAG - none -
fig|6666666.229917.rna.27 RNA AJMH02000021.1 18691 18619 -1 - 73 tRNA-Asn-GTT - none -
fig|6666666.229917.rna.28 RNA AJMH02000027.1 94 167 1 + 74 tRNA-Ile-GAT - none -
fig|6666666.229917.rna.29 RNA AJMH02000027.1 220 292 1 + 73 tRNA-Ala-TGC - none -
fig|6666666.229917.rna.30 RNA AJMH02000028.1 704 614 -2 - 91 tRNA-SeC(p)-TCA - none -
fig|6666666.229917.rna.31 RNA AJMH02000029.1 10077 10005 -3 - 73 tRNA-Lys-TTT - none -
fig|6666666.229917.rna.32 RNA AJMH02000029.1 10216 10133 -1 - 84 tRNA-Leu-TAA - none -
fig|6666666.229917.rna.33 RNA AJMH02000029.1 10293 10221 -3 - 73 tRNA-Gly-GCC - none -
fig|6666666.229917.rna.34 RNA AJMH02000031.1 36857 36930 2 + 74 tRNA-Met-CAT - none -
fig|6666666.229917.rna.35 RNA AJMH02000031.1 36939 37020 3 + 82 tRNA-Leu-TAG - none -
fig|6666666.229917.rna.36 RNA AJMH02000031.1 37053 37124 3 + 72 tRNA-Gln-TTG - none -
fig|6666666.229917.rna.37 RNA AJMH02000031.1 37165 37236 1 + 72 tRNA-Gln-TTG - none -
fig|6666666.229917.rna.38 RNA AJMH02000031.1 62881 62954 1 + 74 tRNA-Met-CAT - none -
fig|6666666.229917.rna.39 RNA AJMH02000035.1 163 90 -1 - 74 tRNA-Arg-TCT - none -
fig|6666666.229917.rna.40 RNA AJMH02000035.1 273 200 -3 - 74 tRNA-Pro-TGG - none -
fig|6666666.229917.rna.41 RNA AJMH02000041.1 23368 23441 1 + 74 tRNA-Val-GAC - none -
fig|6666666.229917.rna.42 RNA AJMH02000044.1 200562 200489 -3 - 74 tRNA-Asp-GTC - none -
fig|6666666.229917.rna.43 RNA AJMH02000044.1 200661 200588 -3 - 74 tRNA-Asp-GTC - none -
fig|6666666.229917.rna.44 RNA AJMH02000044.1 340149 340067 -3 - 83 tRNA-Leu-CAA - none -
fig|6666666.229917.rna.45 RNA AJMH02000044.1 10933 10860 -1 - 74 tRNA-Lys-CTT - none -
fig|6666666.229917.rna.46 RNA AJMH02000044.1 11034 10962 -3 - 73 tRNA-Lys-TTT - none -
fig|6666666.229917.rna.47 RNA AJMH02000044.1 11136 11064 -3 - 73 tRNA-Lys-TTT - none -
fig|6666666.229917.rna.48 RNA AJMH02000044.1 59174 59088 -2 - 87 tRNA-Ser-TGA - none -
fig|6666666.229917.rna.49 RNA AJMH02000044.1 66529 66601 1 + 73 tRNA-Gly-GCC - none -
fig|6666666.229917.rna.50 RNA AJMH02000044.1 66613 66683 1 + 71 tRNA-Cys-GCA - none -
fig|6666666.229917.rna.51 RNA AJMH02000044.1 81581 81508 -2 - 74 tRNA-Met-CAT - none -