fig|6666666.229926.peg.1 CDS AEJM01000001.1 1618 95 -1 - 1524 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) D-gluconate and ketogluconates metabolism;
Pentose phosphate pathway
fig|6666666.229926.peg.2 CDS AEJM01000001.1 2235 1714 -3 - 522 Uncharacterized virulence-associated protein D - none -
fig|6666666.229926.peg.3 CDS AEJM01000001.1 2506 2252 -1 - 255 Glutaredoxin-related protein Glutaredoxins
fig|6666666.229926.peg.4 CDS AEJM01000001.1 2662 2519 -1 - 144 Aspartate racemase (EC 5.1.1.13) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229926.peg.5 CDS AEJM01000001.1 3955 3257 -1 - 699 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type Entner-Doudoroff Pathway;
Pentose phosphate pathway
fig|6666666.229926.peg.6 CDS AEJM01000001.1 5615 4131 -2 - 1485 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) Entner-Doudoroff Pathway;
Pentose phosphate pathway
fig|6666666.229926.peg.7 CDS AEJM01000001.1 6506 5697 -2 - 810 3@1(2@1),5@1-bisphosphate nucleotidase (EC 3.1.3.7) - none -
fig|6666666.229926.peg.8 CDS AEJM01000001.1 6972 6544 -3 - 429 hypothetical protein - none -
fig|6666666.229926.peg.9 CDS AEJM01000001.1 9040 7034 -1 - 2007 oligopeptide transporter - none -
fig|6666666.229926.peg.10 CDS AEJM01000001.1 9408 10034 3 + 627 membrane protein ykgB - none -
fig|6666666.229926.peg.11 CDS AEJM01000001.1 10105 10986 1 + 882 Transcriptional regulator, AraC family - none -
fig|6666666.229926.peg.12 CDS AEJM01000001.1 11539 10991 -1 - 549 ADP compounds hydrolase NudE (EC 3.6.1.-) Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229926.peg.13 CDS AEJM01000001.1 11620 12279 1 + 660 FIG001957: putative hydrolase CBSS-584.1.peg.3382
fig|6666666.229926.peg.14 CDS AEJM01000001.1 12292 12708 1 + 417 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) CBSS-584.1.peg.3382;
Cell division-ribosomal stress proteins cluster;
DNA replication cluster 1;
Heat shock dnaK gene cluster extended
fig|6666666.229926.peg.15 CDS AEJM01000001.1 12777 13649 3 + 873 33 kDa chaperonin (Heat shock protein 33) (HSP33) CBSS-584.1.peg.3382
fig|6666666.229926.peg.16 CDS AEJM01000001.1 13768 13884 1 + 117 hypothetical protein - none -
fig|6666666.229926.peg.17 CDS AEJM01000001.1 14060 14290 2 + 231 Twin-arginine translocation protein TatA Cluster-based Subsystem Grouping Hypotheticals - perhaps Proteosome Related;
Twin-arginine translocation system
fig|6666666.229926.peg.18 CDS AEJM01000001.1 14294 14956 2 + 663 Twin-arginine translocation protein TatB Twin-arginine translocation system
fig|6666666.229926.peg.19 CDS AEJM01000001.1 14994 15755 3 + 762 Twin-arginine translocation protein TatC Cluster-based Subsystem Grouping Hypotheticals - perhaps Proteosome Related;
Twin-arginine translocation system
fig|6666666.229926.peg.20 CDS AEJM01000001.1 15777 16799 3 + 1023 Porphobilinogen synthase (EC 4.2.1.24) Heme and Siroheme Biosynthesis
fig|6666666.229926.peg.21 CDS AEJM01000001.1 19070 16941 -2 - 2130 Glycyl-tRNA synthetase beta chain (EC 6.1.1.14) Glycyl-tRNA synthetase;
Glycyl-tRNA synthetase containing cluster;
tRNA aminoacylation, Gly
fig|6666666.229926.peg.22 CDS AEJM01000001.1 19806 19063 -3 - 744 ATPase family protein - none -
fig|6666666.229926.peg.23 CDS AEJM01000001.1 20931 19813 -3 - 1119 ATPase family protein - none -
fig|6666666.229926.peg.24 CDS AEJM01000001.1 21213 20980 -3 - 234 FIG074102: hypothetical protein - none -
fig|6666666.229926.peg.25 CDS AEJM01000001.1 22009 21179 -1 - 831 FIG074102: hypothetical protein - none -
fig|6666666.229926.peg.26 CDS AEJM01000001.1 22309 22049 -1 - 261 Glutaredoxin-related protein Glutaredoxins
fig|6666666.229926.peg.27 CDS AEJM01000001.1 23264 22359 -2 - 906 Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14) Glycyl-tRNA synthetase;
Glycyl-tRNA synthetase containing cluster;
tRNA aminoacylation, Gly
fig|6666666.229926.peg.28 CDS AEJM01000001.1 23616 23383 -3 - 234 Ferredoxin-type protein NapF (periplasmic nitrate reductase) - none -
fig|6666666.229926.peg.29 CDS AEJM01000001.1 24293 23631 -2 - 663 Putative oxidoreductase component of anaerobic dehydrogenases; Functional role page for Chaperone protein TorD - none -
fig|6666666.229926.peg.30 CDS AEJM01000001.1 25133 24294 -2 - 840 Anaerobic dimethyl sulfoxide reductase chain C (EC 1.8.5.3) - none -
fig|6666666.229926.peg.31 CDS AEJM01000001.1 25752 25135 -3 - 618 Anaerobic dimethyl sulfoxide reductase chain B (EC 1.8.5.3) - none -
fig|6666666.229926.peg.32 CDS AEJM01000001.1 26344 25763 -1 - 582 Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.5.3) - none -
fig|6666666.229926.peg.33 CDS AEJM01000001.1 28181 26376 -2 - 1806 Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.5.3) - none -
fig|6666666.229926.peg.34 CDS AEJM01000001.1 28456 28316 -1 - 141 hypothetical protein - none -
fig|6666666.229926.peg.35 CDS AEJM01000001.1 28954 29067 1 + 114 hypothetical protein - none -
fig|6666666.229926.peg.36 CDS AEJM01000001.1 30084 29338 -3 - 747 cell filamentation-like protein - none -
fig|6666666.229926.peg.37 CDS AEJM01000001.1 30522 30337 -3 - 186 hypothetical protein - none -
fig|6666666.229926.peg.38 CDS AEJM01000001.1 31650 30751 -3 - 900 cell filamentation-like protein - none -
fig|6666666.229926.peg.39 CDS AEJM01000001.1 31810 31631 -1 - 180 hypothetical protein - none -
fig|6666666.229926.peg.40 CDS AEJM01000001.1 32265 32113 -3 - 153 hypothetical protein - none -
fig|6666666.229926.peg.41 CDS AEJM01000001.1 34093 33482 -1 - 612 Ferric siderophore transport system, periplasmic binding protein TonB Hemin transport system;
Ton and Tol transport systems
fig|6666666.229926.peg.42 CDS AEJM01000001.1 34696 34250 -1 - 447 Biopolymer transport protein ExbD/TolR Ton and Tol transport systems
fig|6666666.229926.peg.43 CDS AEJM01000001.1 35170 34700 -1 - 471 Ferric siderophore transport system, biopolymer transport protein ExbB Ton and Tol transport systems
fig|6666666.229926.peg.44 CDS AEJM01000001.1 36602 35340 -2 - 1263 Magnesium and cobalt efflux protein CorC CBSS-56780.10.peg.1536;
Copper homeostasis: copper tolerance;
Glycyl-tRNA synthetase containing cluster;
Magnesium transport;
tRNA-methylthiotransferase containing cluster
fig|6666666.229926.peg.45 CDS AEJM01000001.1 37468 36677 -1 - 792 FIG001154: CcsA-related protein - none -
fig|6666666.229926.peg.46 CDS AEJM01000001.1 37622 39001 2 + 1380 Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1) Bacterial signal recognition particle (SRP);
Universal GTPases
fig|6666666.229926.peg.47 CDS AEJM01000001.1 39234 39040 -3 - 195 hypothetical protein - none -
fig|6666666.229926.peg.48 CDS AEJM01000001.1 40408 39578 -1 - 831 S-formylglutathione hydrolase (EC 3.1.2.12) Glutathione-dependent pathway of formaldehyde detoxification
fig|6666666.229926.peg.49 CDS AEJM01000001.1 40843 40439 -1 - 405 S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) Glutathione-dependent pathway of formaldehyde detoxification
fig|6666666.229926.peg.50 CDS AEJM01000001.1 41559 40840 -3 - 720 S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) Glutathione-dependent pathway of formaldehyde detoxification
fig|6666666.229926.peg.51 CDS AEJM01000001.1 41698 42105 1 + 408 Transcriptional regulator, MerR family Cobalt-zinc-cadmium resistance
fig|6666666.229926.peg.52 CDS AEJM01000001.1 42967 42218 -1 - 750 Sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140) - none -
fig|6666666.229926.peg.53 CDS AEJM01000001.1 44081 43119 -2 - 963 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) - none -
fig|6666666.229926.peg.54 CDS AEJM01000001.1 45784 44417 -1 - 1368 Adenylosuccinate lyase (EC 4.3.2.2) CBSS-354.1.peg.876;
Purine conversions
fig|6666666.229926.peg.55 CDS AEJM01000001.1 46419 45808 -3 - 612 FIG002903: a protein of unknown function perhaps involved in purine metabolism CBSS-354.1.peg.876
fig|6666666.229926.peg.56 CDS AEJM01000001.1 46532 46942 2 + 411 Copper metallochaperone, bacterial analog of Cox17 protein Biogenesis of cytochrome c oxidases
fig|6666666.229926.peg.57 CDS AEJM01000001.1 47080 47616 1 + 537 Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR De Novo Pyrimidine Synthesis;
De Novo Pyrimidine Synthesis;
pyrimidine conversions
fig|6666666.229926.peg.58 CDS AEJM01000001.1 47683 48615 1 + 933 Survival protein SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA) (EC 5.2.1.8) Lipopolysaccharide assembly;
Peptidyl-prolyl cis-trans isomerase;
Periplasmic Stress Response
fig|6666666.229926.peg.59 CDS AEJM01000001.1 48694 49557 1 + 864 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase (EC 2.1.1.182) RNA methylation;
Ribosome biogenesis bacterial
fig|6666666.229926.peg.60 CDS AEJM01000001.1 49572 50399 3 + 828 Bis(5@1-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) - none -
fig|6666666.229926.peg.61 CDS AEJM01000001.1 50490 50909 3 + 420 nucleotidyltransferase substrate binding protein, HI0074 family - none -
fig|6666666.229926.peg.62 CDS AEJM01000001.1 50893 51186 1 + 294 Type I restriction-modification system, specificity subunit S (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229926.peg.63 CDS AEJM01000001.1 51214 51846 1 + 633 FIG00696423: hypothetical protein - none -
fig|6666666.229926.peg.64 CDS AEJM01000001.1 51967 54555 1 + 2589 Leucyl-tRNA synthetase (EC 6.1.1.4) CBSS-208964.1.peg.3988;
tRNA aminoacylation, Leu
fig|6666666.229926.peg.65 CDS AEJM01000001.1 54708 54580 -3 - 129 hypothetical protein - none -
fig|6666666.229926.peg.66 CDS AEJM01000001.1 54697 55200 1 + 504 LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B) CBSS-208964.1.peg.3988;
KDO2-Lipid A biosynthesis;
Lipopolysaccharide assembly
fig|6666666.229926.peg.67 CDS AEJM01000001.1 55200 56234 3 + 1035 DNA polymerase III delta subunit (EC 2.7.7.7) CBSS-208964.1.peg.3988
fig|6666666.229926.peg.68 CDS AEJM01000001.1 57127 56723 -1 - 405 Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-) Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229926.peg.69 CDS AEJM01000001.1 59903 57204 -2 - 2700 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) - none -
fig|6666666.229926.peg.70 CDS AEJM01000001.1 60239 59976 -2 - 264 hypothetical protein - none -
fig|6666666.229926.peg.71 CDS AEJM01000001.1 60418 60290 -1 - 129 hypothetical protein - none -
fig|6666666.229926.peg.72 CDS AEJM01000001.1 60385 60696 1 + 312 Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives DNA replication cluster 1
fig|6666666.229926.peg.73 CDS AEJM01000001.1 60817 61227 1 + 411 Mercuric resistance operon regulatory protein - none -
fig|6666666.229926.peg.74 CDS AEJM01000001.1 64126 61295 -1 - 2832 Excinuclease ABC subunit A DNA repair, UvrABC system
fig|6666666.229926.peg.75 CDS AEJM01000001.1 64297 64776 1 + 480 Single-stranded DNA-binding protein DNA repair, bacterial;
DNA repair, bacterial RecFOR pathway
fig|6666666.229926.peg.76 CDS AEJM01000001.1 65448 64870 -3 - 579 Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) Ribonucleotide reduction
fig|6666666.229926.peg.77 CDS AEJM01000001.1 66164 65448 -2 - 717 ClpB protein Protein chaperones;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229926.peg.78 CDS AEJM01000001.1 66786 66175 -3 - 612 hypothetical protein - none -
fig|6666666.229926.peg.79 CDS AEJM01000001.1 68049 67195 -3 - 855 Methyl-directed repair DNA adenine methylase (EC 2.1.1.72) DNA repair, bacterial
fig|6666666.229926.peg.80 CDS AEJM01000001.1 69140 68052 -2 - 1089 3-dehydroquinate synthase (EC 4.2.3.4) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate);
Type IV pilus
fig|6666666.229926.peg.81 CDS AEJM01000001.1 69694 69167 -1 - 528 Shikimate kinase I (EC 2.7.1.71) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229926.peg.82 CDS AEJM01000001.1 71316 69952 -3 - 1365 Type IV pilus biogenesis protein PilQ; Competence protein E DNA uptake cluster;
Type IV pilus
fig|6666666.229926.peg.83 CDS AEJM01000001.1 71729 71337 -2 - 393 Type IV pilus biogenesis protein PilQ; Competence protein D DNA uptake cluster;
Type IV pilus
fig|6666666.229926.peg.84 CDS AEJM01000001.1 72253 71729 -1 - 525 Competence protein C; Chromosome segregation ATPases DNA uptake cluster
fig|6666666.229926.peg.85 CDS AEJM01000001.1 72768 72250 -3 - 519 Type IV pilus biogenesis protein PilN; Competence protein B DNA uptake cluster;
Type IV pilus
fig|6666666.229926.peg.86 CDS AEJM01000001.1 73588 72779 -1 - 810 Type IV pilus biogenesis protein PilM; Competence protein A DNA uptake cluster;
Type IV pilus
fig|6666666.229926.peg.87 CDS AEJM01000001.1 73717 76281 1 + 2565 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) DNA uptake cluster;
Peptidoglycan Biosynthesis;
Type IV pilus
fig|6666666.229926.peg.88 CDS AEJM01000001.1 76378 77223 1 + 846 Protein involved in catabolism of external DNA DNA processing cluster;
DNA uptake cluster
fig|6666666.229926.peg.89 CDS AEJM01000001.1 77318 78688 2 + 1371 Glutathione reductase (EC 1.8.1.7) Glutathione: Redox cycle
fig|6666666.229926.peg.90 CDS AEJM01000001.1 79465 78821 -1 - 645 Cyclic AMP receptor protein cAMP signaling in bacteria
fig|6666666.229926.peg.91 CDS AEJM01000001.1 79721 79503 -2 - 219 FIG00696234: hypothetical protein - none -
fig|6666666.229926.peg.92 CDS AEJM01000001.1 80344 79745 -1 - 600 Transcriptional regulator SlmA, TetR family - none -
fig|6666666.229926.peg.93 CDS AEJM01000001.1 80799 80344 -3 - 456 Deoxyuridine 5@1-triphosphate nucleotidohydrolase (EC 3.6.1.23) Housecleaning nucleoside triphosphate pyrophosphatases;
Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229926.peg.94 CDS AEJM01000001.1 82067 80868 -2 - 1200 Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) / Phosphopantothenoylcysteine synthetase (EC 6.3.2.5) Coenzyme A Biosynthesis;
Coenzyme A Biosynthesis
fig|6666666.229926.peg.95 CDS AEJM01000001.1 82245 82904 3 + 660 DNA repair protein RadC DNA repair, bacterial
fig|6666666.229926.peg.96 CDS AEJM01000001.1 83176 83349 1 + 174 LSU ribosomal protein L28p Ribosome LSU bacterial
fig|6666666.229926.peg.97 CDS AEJM01000001.1 83361 83531 3 + 171 LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-independent Ribosome LSU bacterial;
Ribosome LSU bacterial
fig|6666666.229926.peg.98 CDS AEJM01000001.1 83614 84429 1 + 816 Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) DNA Repair Base Excision
fig|6666666.229926.peg.99 CDS AEJM01000001.1 85484 84432 -2 - 1053 COG0859: ADP-heptose:LPS heptosyltransferase - none -
fig|6666666.229926.peg.100 CDS AEJM01000001.1 86516 85494 -2 - 1023 COG0859: ADP-heptose:LPS heptosyltransferase - none -
fig|6666666.229926.peg.101 CDS AEJM01000001.1 87209 86517 -2 - 693 Beta-1,4-galactosyltransferase LOS core oligosaccharide biosynthesis
fig|6666666.229926.peg.102 CDS AEJM01000001.1 87483 87271 -3 - 213 LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-dependent Ribosome LSU bacterial;
Ribosome LSU bacterial
fig|6666666.229926.peg.103 CDS AEJM01000001.1 87742 88590 1 + 849 Lipooligosaccharide biosynthesis protein lex-1 (EC 2.-.-.-) - none -
fig|6666666.229926.peg.104 CDS AEJM01000001.1 88615 89604 1 + 990 putative capsular polysaccharide synthesis protein - none -
fig|6666666.229926.peg.105 CDS AEJM01000001.1 90466 89606 -1 - 861 Involved in lipopolysaccharide biosynthesis - none -
fig|6666666.229926.peg.106 CDS AEJM01000001.1 90709 92907 1 + 2199 Helicase PriA essential for oriC/DnaA-independent DNA replication Conserved gene cluster associated with Met-tRNA formyltransferase
fig|6666666.229926.peg.107 CDS AEJM01000001.1 93017 93850 2 + 834 Cell division protein - none -
fig|6666666.229926.peg.108 CDS AEJM01000001.1 94053 94619 3 + 567 Probable Co/Zn/Cd efflux system membrane fusion protein Cobalt-zinc-cadmium resistance
fig|6666666.229926.peg.109 CDS AEJM01000001.1 94645 95841 1 + 1197 Probable Co/Zn/Cd efflux system membrane fusion protein Cobalt-zinc-cadmium resistance
fig|6666666.229926.peg.110 CDS AEJM01000001.1 95855 98953 2 + 3099 RND multidrug efflux transporter; Acriflavin resistance protein Multidrug Resistance Efflux Pumps
fig|6666666.229926.peg.111 CDS AEJM01000001.1 99021 99353 3 + 333 Orf2 - none -
fig|6666666.229926.peg.112 CDS AEJM01000002.1 2167 65 -1 - 2103 Translation elongation factor G Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Translation elongation factor G family;
Translation elongation factors bacterial;
Universal GTPases
fig|6666666.229926.peg.113 CDS AEJM01000002.1 2754 2284 -3 - 471 SSU ribosomal protein S7p (S5e) Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Ribosome SSU bacterial
fig|6666666.229926.peg.114 CDS AEJM01000002.1 3044 2907 -2 - 138 SSU ribosomal protein S12p (S23e) Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Ribosomal protein S12p Asp methylthiotransferase;
Ribosome SSU bacterial
fig|6666666.229926.peg.115 CDS AEJM01000002.1 3268 3513 1 + 246 hypothetical protein - none -
fig|6666666.229926.peg.116 CDS AEJM01000002.1 4368 3502 -3 - 867 Ketol-acid reductoisomerase (EC 1.1.1.86) Coenzyme A Biosynthesis
fig|6666666.229926.peg.117 CDS AEJM01000002.1 4389 4547 3 + 159 HTH-type transcriptional regulator IlvY Alanine biosynthesis;
LysR-family proteins in Escherichia coli;
LysR-family proteins in Salmonella enterica Typhimurium
fig|6666666.229926.peg.118 CDS AEJM01000002.1 4580 5461 2 + 882 Protein rarD - none -
fig|6666666.229926.peg.119 CDS AEJM01000002.1 6256 5456 -1 - 801 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) Chorismate Synthesis;
Cluster containing Alanyl-tRNA synthetase;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229926.peg.120 CDS AEJM01000002.1 6811 6260 -1 - 552 TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA - none -
fig|6666666.229926.peg.121 CDS AEJM01000002.1 7364 6816 -2 - 549 Similar to C-terminal Zn-finger domain of DNA topoisomerase I Conserved gene cluster associated with Met-tRNA formyltransferase;
DNA topoisomerases, Type I, ATP-independent
fig|6666666.229926.peg.122 CDS AEJM01000002.1 7363 7533 1 + 171 hypothetical protein - none -
fig|6666666.229926.peg.123 CDS AEJM01000002.1 7509 9122 3 + 1614 DNA recombination protein RmuC DNA repair, bacterial
fig|6666666.229926.peg.124 CDS AEJM01000002.1 9249 9797 3 + 549 FIG00903983: hypothetical protein - none -
fig|6666666.229926.peg.125 CDS AEJM01000002.1 9810 10136 3 + 327 Thiosulfate sulfurtransferase GlpE (EC 2.8.1.1) Single-Rhodanese-domain proteins
fig|6666666.229926.peg.126 CDS AEJM01000002.1 10461 10147 -3 - 315 Uncharacterized protein PM1437 - none -
fig|6666666.229926.peg.127 CDS AEJM01000002.1 10504 11379 1 + 876 GlpG protein (membrane protein of glp regulon) - none -
fig|6666666.229926.peg.128 CDS AEJM01000002.1 11441 12196 2 + 756 Glycerol-3-phosphate regulon repressor GlpR - none -
fig|6666666.229926.peg.129 CDS AEJM01000002.1 12520 15045 1 + 2526 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229926.peg.130 CDS AEJM01000002.1 17727 15910 -3 - 1818 ABC transporter ATP-binding protein - none -
fig|6666666.229926.peg.131 CDS AEJM01000002.1 17851 19509 1 + 1659 Mediator of hyperadherence YidE - none -
fig|6666666.229926.peg.132 CDS AEJM01000002.1 19666 20379 1 + 714 Uridine monophosphate kinase (EC 2.7.4.22) CBSS-312309.3.peg.1965;
Ribosome recycling related cluster
fig|6666666.229926.peg.133 CDS AEJM01000002.1 20447 20602 2 + 156 hypothetical protein - none -
fig|6666666.229926.peg.134 CDS AEJM01000002.1 20603 21160 2 + 558 Ribosome recycling factor Ribosome recycling related cluster;
Translation termination factors bacterial
fig|6666666.229926.peg.135 CDS AEJM01000002.1 21189 22472 3 + 1284 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.267) CBSS-83331.1.peg.3039;
Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.229926.peg.136 CDS AEJM01000002.1 22494 23213 3 + 720 Undecaprenyl diphosphate synthase (EC 2.5.1.31) CBSS-83331.1.peg.3039;
Isoprenoid Biosynthesis;
Isoprenoinds for Quinones;
Polyprenyl Diphosphate Biosynthesis
fig|6666666.229926.peg.137 CDS AEJM01000002.1 23228 24097 2 + 870 Phosphatidate cytidylyltransferase (EC 2.7.7.41) CBSS-316407.3.peg.1371;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229926.peg.138 CDS AEJM01000002.1 24106 25440 1 + 1335 Membrane-associated zinc metalloprotease - none -
fig|6666666.229926.peg.139 CDS AEJM01000002.1 25459 27870 1 + 2412 Outer membrane protein assembly factor YaeT precursor Lipopolysaccharide assembly;
Llipid A biosynthesis cluster
fig|6666666.229926.peg.140 CDS AEJM01000002.1 27975 28553 3 + 579 Outer membrane chaperone Skp (OmpH) precursor @ Outer membrane protein H precursor Lipopolysaccharide assembly;
Llipid A biosynthesis cluster;
Periplasmic Stress Response
fig|6666666.229926.peg.141 CDS AEJM01000002.1 28553 29575 2 + 1023 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC 2.3.1.-) KDO2-Lipid A biosynthesis;
Llipid A biosynthesis cluster
fig|6666666.229926.peg.142 CDS AEJM01000002.1 29712 30122 3 + 411 3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabZ form (EC 4.2.1.59) Fatty Acid Biosynthesis FASII;
Llipid A biosynthesis cluster
fig|6666666.229926.peg.143 CDS AEJM01000002.1 30143 30931 2 + 789 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase (EC 2.3.1.129) KDO2-Lipid A biosynthesis;
Llipid A biosynthesis cluster
fig|6666666.229926.peg.144 CDS AEJM01000002.1 31033 30908 -1 - 126 hypothetical protein - none -
fig|6666666.229926.peg.145 CDS AEJM01000002.1 31015 32199 1 + 1185 Lipid-A-disaccharide synthase (EC 2.4.1.182) KDO2-Lipid A biosynthesis;
Llipid A biosynthesis cluster
fig|6666666.229926.peg.146 CDS AEJM01000002.1 32192 32791 2 + 600 Ribonuclease HII (EC 3.1.26.4) Conserved gene cluster associated with Met-tRNA formyltransferase;
Ribonuclease H
fig|6666666.229926.peg.147 CDS AEJM01000002.1 32831 34699 2 + 1869 Putative transport protein - none -
fig|6666666.229926.peg.148 CDS AEJM01000002.1 34710 35318 3 + 609 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5) CBSS-316407.3.peg.1371;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229926.peg.149 CDS AEJM01000002.1 35329 35961 1 + 633 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229926.peg.150 CDS AEJM01000002.1 35961 36890 3 + 930 Phosphatidate cytidylyltransferase (EC 2.7.7.41) CBSS-316407.3.peg.1371;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229926.peg.151 CDS AEJM01000002.1 36970 37551 1 + 582 Molybdopterin biosynthesis molybdochelatase MogA Molybdenum cofactor biosynthesis
fig|6666666.229926.peg.152 CDS AEJM01000003.1 118 1692 1 + 1575 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE Copper homeostasis: copper tolerance;
Lipoprotein Biosynthesis;
tRNA-methylthiotransferase containing cluster;
tRNA-methylthiotransferase containing cluster
fig|6666666.229926.peg.153 CDS AEJM01000003.1 1972 1754 -1 - 219 Translation initiation factor 1 Translation initiation factors bacterial
fig|6666666.229926.peg.154 CDS AEJM01000003.1 2124 1990 -3 - 135 hypothetical protein - none -
fig|6666666.229926.peg.155 CDS AEJM01000003.1 2191 3495 1 + 1305 Peptidase B (EC 3.4.11.23) Aminopeptidases (EC 3.4.11.-)
fig|6666666.229926.peg.156 CDS AEJM01000003.1 3507 3932 3 + 426 Nucleoside diphosphate kinase (EC 2.7.4.6) CBSS-498211.3.peg.1415;
Purine conversions;
pyrimidine conversions
fig|6666666.229926.peg.157 CDS AEJM01000003.1 4067 5212 2 + 1146 Beta-hexosaminidase (EC 3.2.1.52) Chitin and N-acetylglucosamine utilization
fig|6666666.229926.peg.158 CDS AEJM01000003.1 5205 5324 3 + 120 hypothetical protein - none -
fig|6666666.229926.peg.159 CDS AEJM01000003.1 6414 5302 -3 - 1113 Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like Scaffold proteins for [4Fe-4S] cluster assembly (MRP family)
fig|6666666.229926.peg.160 CDS AEJM01000003.1 6587 8650 2 + 2064 Methionyl-tRNA synthetase (EC 6.1.1.10) Scaffold proteins for [4Fe-4S] cluster assembly (MRP family);
tRNA aminoacylation, Met
fig|6666666.229926.peg.161 CDS AEJM01000003.1 8980 8786 -1 - 195 Believed to be involved in assembly of Fe-S clusters tRNA modification Bacteria
fig|6666666.229926.peg.162 CDS AEJM01000003.1 9321 8980 -3 - 342 Ferredoxin, 2Fe-2S Alanine biosynthesis;
Soluble cytochromes and functionally related electron carriers;
tRNA modification Bacteria
fig|6666666.229926.peg.163 CDS AEJM01000003.1 11192 9333 -2 - 1860 Chaperone protein HscA Alanine biosynthesis;
Protein chaperones;
tRNA modification Bacteria
fig|6666666.229926.peg.164 CDS AEJM01000003.1 11734 11213 -1 - 522 Chaperone protein HscB Protein chaperones;
tRNA modification Bacteria
fig|6666666.229926.peg.165 CDS AEJM01000003.1 12069 11746 -3 - 324 Iron binding protein IscA for iron-sulfur cluster assembly Alanine biosynthesis;
tRNA modification Bacteria
fig|6666666.229926.peg.166 CDS AEJM01000003.1 12595 12212 -1 - 384 Iron-sulfur cluster assembly scaffold protein IscU Alanine biosynthesis;
tRNA modification Bacteria
fig|6666666.229926.peg.167 CDS AEJM01000003.1 13869 12655 -3 - 1215 Cysteine desulfurase (EC 2.8.1.7), IscS subfamily Alanine biosynthesis;
Thiamin biosynthesis;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.229926.peg.168 CDS AEJM01000003.1 14397 13924 -3 - 474 Iron-sulfur cluster regulator IscR Alanine biosynthesis;
Rrf2 family transcriptional regulators
fig|6666666.229926.peg.169 CDS AEJM01000003.1 15199 14459 -1 - 741 tRNA:Cm32/Um32 methyltransferase RNA methylation;
tRNA modification Bacteria
fig|6666666.229926.peg.170 CDS AEJM01000003.1 15350 16150 2 + 801 Inositol-1-monophosphatase (EC 3.1.3.25) - none -
fig|6666666.229926.peg.171 CDS AEJM01000003.1 18314 16203 -2 - 2112 unknown - none -
fig|6666666.229926.peg.172 CDS AEJM01000003.1 19738 18692 -1 - 1047 Fe(3+) ions import ATP-binding protein fbpC (EC 3.6.3.30) - none -
fig|6666666.229926.peg.173 CDS AEJM01000003.1 21811 19754 -1 - 2058 Ferric iron ABC transporter, permease protein Iron acquisition in Streptococcus
fig|6666666.229926.peg.174 CDS AEJM01000003.1 22545 21838 -3 - 708 Ferric iron ABC transporter, iron-binding protein Iron acquisition in Streptococcus
fig|6666666.229926.peg.175 CDS AEJM01000003.1 24083 23043 -2 - 1041 Ferric iron ABC transporter, iron-binding protein Iron acquisition in Streptococcus
fig|6666666.229926.peg.176 CDS AEJM01000003.1 24389 25039 2 + 651 Uridine kinase (EC 2.7.1.48) [C1] pyrimidine conversions
fig|6666666.229926.peg.177 CDS AEJM01000003.1 25049 25633 2 + 585 Deoxycytidine triphosphate deaminase (EC 3.5.4.13) pyrimidine conversions
fig|6666666.229926.peg.178 CDS AEJM01000003.1 25634 26836 2 + 1203 FIG00696476: hypothetical protein - none -
fig|6666666.229926.peg.179 CDS AEJM01000003.1 26883 28034 3 + 1152 Sugar efflux transporter SotB - none -
fig|6666666.229926.peg.180 CDS AEJM01000003.1 29645 28104 -2 - 1542 GTP-binding protein EngA CBSS-290633.1.peg.1906;
CBSS-498211.3.peg.1415;
Universal GTPases
fig|6666666.229926.peg.181 CDS AEJM01000003.1 29930 30424 2 + 495 DnaJ-class molecular chaperone CbpA Protein chaperones
fig|6666666.229926.peg.182 CDS AEJM01000003.1 30443 30946 2 + 504 DnaJ-class molecular chaperone CbpA Protein chaperones
fig|6666666.229926.peg.183 CDS AEJM01000003.1 30943 31233 1 + 291 hypothetical protein - none -
fig|6666666.229926.peg.184 CDS AEJM01000003.1 32596 31298 -1 - 1299 Adenylosuccinate synthetase (EC 6.3.4.4) Purine conversions
fig|6666666.229926.peg.185 CDS AEJM01000003.1 33649 32684 -1 - 966 tRNA (5-methoxyuridine) 34 synthase tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229926.peg.186 CDS AEJM01000003.1 35183 33663 -2 - 1521 Proline/sodium symporter PutP (TC 2.A.21.2.1) @ Propionate/sodium symporter - none -
fig|6666666.229926.peg.187 CDS AEJM01000003.1 35322 36797 3 + 1476 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) Bacterial Cell Division;
CBSS-354.1.peg.2917;
RNA processing and degradation, bacterial
fig|6666666.229926.peg.188 CDS AEJM01000003.1 36915 37562 3 + 648 Glutaredoxin 2 Glutaredoxins;
Glutathione: Redox cycle
fig|6666666.229926.peg.189 CDS AEJM01000003.1 37577 38275 2 + 699 NAD-dependent protein deacetylase of SIR2 family Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229926.peg.190 CDS AEJM01000003.1 39022 38633 -1 - 390 Chromosome partitioning ATPase in PFGI-1-like cluster, ParA-like - none -
fig|6666666.229926.peg.191 CDS AEJM01000003.1 40108 39551 -1 - 558 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5) CBSS-316407.3.peg.1371;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229926.peg.192 CDS AEJM01000003.1 40364 41554 2 + 1191 Cystathionine beta-lyase (EC 4.4.1.8) Methionine Biosynthesis
fig|6666666.229926.peg.193 CDS AEJM01000003.1 41768 42820 2 + 1053 Outer membrane protein P2 precursor - none -
fig|6666666.229926.peg.194 CDS AEJM01000003.1 42966 43223 3 + 258 hypothetical protein - none -
fig|6666666.229926.peg.195 CDS AEJM01000003.1 43223 43570 2 + 348 Programmed cell death toxin ChpB - none -
fig|6666666.229926.peg.196 CDS AEJM01000003.1 43563 43691 3 + 129 hypothetical protein - none -
fig|6666666.229926.peg.197 CDS AEJM01000003.1 43869 43645 -3 - 225 hypothetical protein - none -
fig|6666666.229926.peg.198 CDS AEJM01000003.1 44161 43928 -1 - 234 hypothetical protein - none -
fig|6666666.229926.peg.199 CDS AEJM01000003.1 45435 44308 -3 - 1128 Chaperone protein DnaJ GroEL GroES;
Heat shock dnaK gene cluster extended;
Protein chaperones
fig|6666666.229926.peg.200 CDS AEJM01000003.1 48160 46256 -1 - 1905 Chaperone protein DnaK GroEL GroES;
Heat shock dnaK gene cluster extended;
Protein chaperones
fig|6666666.229926.peg.201 CDS AEJM01000003.1 48438 49874 3 + 1437 Putative GTP-binding protein YdgA - none -
fig|6666666.229926.peg.202 CDS AEJM01000003.1 51973 50240 -1 - 1734 Arginyl-tRNA synthetase (EC 6.1.1.19) tRNA aminoacylation, Arg
fig|6666666.229926.peg.203 CDS AEJM01000003.1 52094 52657 2 + 564 Protein yecM - none -
fig|6666666.229926.peg.204 CDS AEJM01000003.1 52699 53154 1 + 456 Outer membrane lipoprotein - none -
fig|6666666.229926.peg.205 CDS AEJM01000003.1 53295 54377 3 + 1083 Peptide chain release factor 1 A Gammaproteobacteria Cluster Relating to Translation;
CBSS-216600.3.peg.802;
Translation termination factors bacterial;
YrdC-YciO-Sua5 protein family
fig|6666666.229926.peg.206 CDS AEJM01000003.1 54421 55320 1 + 900 Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2 A Gammaproteobacteria Cluster Relating to Translation;
CBSS-216600.3.peg.802;
Translation termination factors bacterial;
YrdC-YciO-Sua5 protein family
fig|6666666.229926.peg.207 CDS AEJM01000003.1 55330 56184 1 + 855 2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase (EC 2.5.1.55) A Gammaproteobacteria Cluster Relating to Translation;
KDO2-Lipid A biosynthesis
fig|6666666.229926.peg.208 CDS AEJM01000003.1 56353 56862 1 + 510 probable lipoprotein NlpC - none -
fig|6666666.229926.peg.209 CDS AEJM01000003.1 57467 57255 -2 - 213 Protein YcgL CBSS-243277.1.peg.4359
fig|6666666.229926.peg.210 CDS AEJM01000003.1 57590 58252 2 + 663 Septum site-determining protein MinC Bacterial Cell Division;
Bacterial Cytoskeleton;
Septum site-determining cluster Min
fig|6666666.229926.peg.211 CDS AEJM01000003.1 58765 58274 -1 - 492 FIG00696317: hypothetical protein - none -
fig|6666666.229926.peg.212 CDS AEJM01000003.1 59455 58988 -1 - 468 Phosphohistidine phosphatase SixA - none -
fig|6666666.229926.peg.213 CDS AEJM01000003.1 60805 59468 -1 - 1338 Phosphoglucosamine mutase (EC 5.4.2.10) Sialic Acid Metabolism;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229926.peg.214 CDS AEJM01000003.1 61664 60837 -2 - 828 Dihydropteroate synthase (EC 2.5.1.15) Folate Biosynthesis;
Folate biosynthesis cluster
fig|6666666.229926.peg.215 CDS AEJM01000003.1 63016 61826 -1 - 1191 DNA polymerase IV (EC 2.7.7.7) DNA repair, bacterial
fig|6666666.229926.peg.216 CDS AEJM01000003.1 63584 64033 2 + 450 ImpA - none -
fig|6666666.229926.peg.217 CDS AEJM01000003.1 64611 64432 -3 - 180 hypothetical protein - none -
fig|6666666.229926.peg.218 CDS AEJM01000003.1 66253 64787 -1 - 1467 Inosine-5@1-monophosphate dehydrogenase (EC 1.1.1.205) Purine conversions;
Purine salvage cluster
fig|6666666.229926.peg.219 CDS AEJM01000003.1 66395 67327 2 + 933 Biotin--protein ligase (EC 6.3.4.9, EC 6.3.4.10, EC 6.3.4.11, EC 6.3.4.15) - none -
fig|6666666.229926.peg.220 CDS AEJM01000003.1 67414 67617 1 + 204 Osmotically inducible lipoprotein B precursor Osmotic stress cluster
fig|6666666.229926.peg.221 CDS AEJM01000004.1 48 1202 3 + 1155 Galactokinase (EC 2.7.1.6) Lactose and Galactose Uptake and Utilization
fig|6666666.229926.peg.222 CDS AEJM01000004.1 1196 2230 2 + 1035 Aldose 1-epimerase (EC 5.1.3.3) Lactose and Galactose Uptake and Utilization;
Maltose and Maltodextrin Utilization
fig|6666666.229926.peg.223 CDS AEJM01000004.1 3991 2492 -1 - 1500 Putative ATP /GTP binding protein - none -
fig|6666666.229926.peg.224 CDS AEJM01000004.1 5702 4269 -2 - 1434 2-oxoglutarate/malate translocator - none -
fig|6666666.229926.peg.225 CDS AEJM01000004.1 7101 5689 -3 - 1413 2-(5@1@1-triphosphoribosyl)-3@1-dephosphocoenzyme-A synthase (EC 2.7.8.25) Citrate Metabolism, Transport, and Regulation
fig|6666666.229926.peg.226 CDS AEJM01000004.1 8778 7276 -3 - 1503 Citrate lyase alpha chain (EC 4.1.3.6) Citrate Metabolism, Transport, and Regulation
fig|6666666.229926.peg.227 CDS AEJM01000004.1 9668 8793 -2 - 876 Citrate lyase beta chain (EC 4.1.3.6) Citrate Metabolism, Transport, and Regulation
fig|6666666.229926.peg.228 CDS AEJM01000004.1 9952 9665 -1 - 288 Citrate lyase gamma chain, acyl carrier protein (EC 4.1.3.6) Citrate Metabolism, Transport, and Regulation;
TCA Cycle
fig|6666666.229926.peg.229 CDS AEJM01000004.1 10999 9992 -1 - 1008 [Citrate [pro-3S]-lyase] ligase (EC 6.2.1.22) Citrate Metabolism, Transport, and Regulation
fig|6666666.229926.peg.230 CDS AEJM01000004.1 11166 11038 -3 - 129 hypothetical protein - none -
fig|6666666.229926.peg.231 CDS AEJM01000004.1 11246 12142 2 + 897 Magnesium and cobalt efflux protein CorC CBSS-56780.10.peg.1536;
Copper homeostasis: copper tolerance;
Glycyl-tRNA synthetase containing cluster;
Magnesium transport;
tRNA-methylthiotransferase containing cluster
fig|6666666.229926.peg.232 CDS AEJM01000005.1 799 50 -1 - 750 Deoxyribose operon repressor, DeoR family Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.229926.peg.233 CDS AEJM01000005.1 1491 763 -3 - 729 Deoxyribose-phosphate aldolase (EC 4.1.2.4) Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.229926.peg.234 CDS AEJM01000005.1 2881 2651 -1 - 231 FIG00354920: hypothetical protein - none -
fig|6666666.229926.peg.235 CDS AEJM01000005.1 4893 2878 -3 - 2016 Putative uncharacterized protein ydbH - none -
fig|6666666.229926.peg.236 CDS AEJM01000005.1 5601 4900 -3 - 702 probable exported protein STY1423 - none -
fig|6666666.229926.peg.237 CDS AEJM01000005.1 6323 5706 -2 - 618 Multiple antibiotic resistance protein marC - none -
fig|6666666.229926.peg.238 CDS AEJM01000005.1 6404 7000 2 + 597 Glutathione-regulated potassium-efflux system ATP-binding protein Potassium homeostasis
fig|6666666.229926.peg.239 CDS AEJM01000005.1 7027 8328 1 + 1302 Glutathione-regulated potassium-efflux system ATP-binding protein Potassium homeostasis
fig|6666666.229926.peg.240 CDS AEJM01000005.1 8473 9531 1 + 1059 RecA protein DNA repair, bacterial;
DNA repair, bacterial RecFOR pathway;
DNA repair system including RecA, MutS and a hypothetical protein;
RecA and RecX
fig|6666666.229926.peg.241 CDS AEJM01000005.1 9610 10068 1 + 459 Regulatory protein RecX DNA repair system including RecA, MutS and a hypothetical protein;
RecA and RecX
fig|6666666.229926.peg.242 CDS AEJM01000005.1 10146 10535 3 + 390 Endoribonuclease L-PSP - none -
fig|6666666.229926.peg.243 CDS AEJM01000005.1 12604 10607 -1 - 1998 Transketolase (EC 2.2.1.1) Pentose phosphate pathway
fig|6666666.229926.peg.244 CDS AEJM01000005.1 12717 12604 -3 - 114 hypothetical protein - none -
fig|6666666.229926.peg.245 CDS AEJM01000005.1 13689 12736 -3 - 954 Transaldolase (EC 2.2.1.2) Fructose utilization;
Pentose phosphate pathway
fig|6666666.229926.peg.246 CDS AEJM01000006.1 31 771 1 + 741 Threonine dehydratase biosynthetic (EC 4.3.1.19) - none -
fig|6666666.229926.peg.247 CDS AEJM01000006.1 799 1452 1 + 654 Threonine dehydratase biosynthetic (EC 4.3.1.19) - none -
fig|6666666.229926.peg.248 CDS AEJM01000006.1 2420 1488 -2 - 933 Cell division protein FtsX Bacterial Cell Division
fig|6666666.229926.peg.249 CDS AEJM01000006.1 3079 2429 -1 - 651 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) Bacterial Cell Division
fig|6666666.229926.peg.250 CDS AEJM01000006.1 4030 3356 -1 - 675 Phosphoglycolate phosphatase (EC 3.1.3.18) 2-phosphoglycolate salvage;
Glycolate, glyoxylate interconversions
fig|6666666.229926.peg.251 CDS AEJM01000006.1 4708 4034 -1 - 675 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) Conserved gene cluster associated with Met-tRNA formyltransferase;
Pentose phosphate pathway;
Riboflavin synthesis cluster
fig|6666666.229926.peg.252 CDS AEJM01000006.1 4860 5138 3 + 279 Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage Bacterial Cell Division;
Bacterial Cytoskeleton;
Cell division-ribosomal stress proteins cluster;
Stationary phase repair cluster
fig|6666666.229926.peg.253 CDS AEJM01000006.1 5138 5833 2 + 696 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC 2.7.7.60) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis;
Stationary phase repair cluster;
Teichoic and lipoteichoic acids biosynthesis
fig|6666666.229926.peg.254 CDS AEJM01000006.1 5830 6309 1 + 480 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis;
Stationary phase repair cluster
fig|6666666.229926.peg.255 CDS AEJM01000006.1 6306 7316 3 + 1011 tRNA pseudouridine 13 synthase (EC 4.2.1.-) Stationary phase repair cluster;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229926.peg.256 CDS AEJM01000006.1 7349 8089 2 + 741 5-nucleotidase SurE (EC 3.1.3.5) Housecleaning nucleoside triphosphate pyrophosphatases;
Stationary phase repair cluster
fig|6666666.229926.peg.257 CDS AEJM01000006.1 8117 8692 2 + 576 FIG139438: lipoprotein B Stationary phase repair cluster
fig|6666666.229926.peg.258 CDS AEJM01000006.1 8707 8898 1 + 192 Cobalamin biosynthesis protein CobN and related Mg-chelatases - none -
fig|6666666.229926.peg.259 CDS AEJM01000006.1 8915 10084 2 + 1170 Lipoprotein NlpD Stationary phase repair cluster
fig|6666666.229926.peg.260 CDS AEJM01000006.1 10911 10150 -3 - 762 Lipopolysaccharide biosynthesis glycosyltransferase - none -
fig|6666666.229926.peg.261 CDS AEJM01000006.1 11010 12293 3 + 1284 3-deoxy-D-manno-octulosonic-acid transferase (EC 2.-.-.-) KDO2-Lipid A biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.229926.peg.262 CDS AEJM01000006.1 12294 12779 3 + 486 Phosphopantetheine adenylyltransferase (EC 2.7.7.3) CBSS-266117.6.peg.1260;
CBSS-269801.1.peg.1715;
Coenzyme A Biosynthesis
fig|6666666.229926.peg.263 CDS AEJM01000006.1 13548 12823 -3 - 726 3-deoxy-D-manno-octulosonic acid kinase (EC 2.7.1.-) - none -
fig|6666666.229926.peg.264 CDS AEJM01000006.1 13638 14681 3 + 1044 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) LOS core oligosaccharide biosynthesis
fig|6666666.229926.peg.265 CDS AEJM01000006.1 15122 14781 -2 - 342 Possible carboxymuconolactone decarboxylase family protein (EC 4.1.1.44) - none -
fig|6666666.229926.peg.266 CDS AEJM01000006.1 15226 16143 1 + 918 transcriptional regulator MtrA - none -
fig|6666666.229926.peg.267 CDS AEJM01000006.1 16232 18076 2 + 1845 Lipid A export ATP-binding/permease protein MsbA - none -
fig|6666666.229926.peg.268 CDS AEJM01000006.1 20555 18117 -2 - 2439 Glycerol-3-phosphate acyltransferase (EC 2.3.1.15) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229926.peg.269 CDS AEJM01000006.1 20749 21372 1 + 624 SOS-response repressor and protease LexA (EC 3.4.21.88) DNA repair, bacterial
fig|6666666.229926.peg.270 CDS AEJM01000006.1 21363 21482 3 + 120 hypothetical protein - none -
fig|6666666.229926.peg.271 CDS AEJM01000006.1 21525 21902 3 + 378 SSU ribosomal protein S6p Primosomal replication protein N clusters with ribosomal proteins;
Ribosome SSU bacterial
fig|6666666.229926.peg.272 CDS AEJM01000006.1 21889 22215 1 + 327 Primosomal replication protein N Primosomal replication protein N clusters with ribosomal proteins
fig|6666666.229926.peg.273 CDS AEJM01000006.1 22228 22458 1 + 231 SSU ribosomal protein S18p @ SSU ribosomal protein S18p, zinc-independent Primosomal replication protein N clusters with ribosomal proteins;
Ribosome SSU bacterial;
Ribosome SSU bacterial
fig|6666666.229926.peg.274 CDS AEJM01000006.1 22474 22923 1 + 450 LSU ribosomal protein L9p Primosomal replication protein N clusters with ribosomal proteins;
Ribosome LSU bacterial
fig|6666666.229926.peg.275 CDS AEJM01000006.1 23149 23415 1 + 267 Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake CBSS-272943.3.peg.1367;
Conserved gene cluster associated with Met-tRNA formyltransferase;
YrdC-YciO-Sua5 protein family
fig|6666666.229926.peg.276 CDS AEJM01000006.1 23553 24266 3 + 714 Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake CBSS-272943.3.peg.1367;
Conserved gene cluster associated with Met-tRNA formyltransferase;
YrdC-YciO-Sua5 protein family
fig|6666666.229926.peg.277 CDS AEJM01000006.1 25405 24323 -1 - 1083 Glycerophosphoryl diester phosphodiesterase, periplasmic (EC 3.1.4.46) - none -
fig|6666666.229926.peg.278 CDS AEJM01000006.1 25418 25549 2 + 132 hypothetical protein - none -
fig|6666666.229926.peg.279 CDS AEJM01000006.1 26997 25555 -3 - 1443 Glycerol-3-phosphate transporter - none -
fig|6666666.229926.peg.280 CDS AEJM01000006.1 27287 27018 -2 - 270 hypothetical protein - none -
fig|6666666.229926.peg.281 CDS AEJM01000006.1 28068 27331 -3 - 738 23S rRNA (guanosine-2@1-O-) -methyltransferase rlmB (EC 2.1.1.-) RNA methylation
fig|6666666.229926.peg.282 CDS AEJM01000006.1 30467 28065 -2 - 2403 3@1-to-5@1 exoribonuclease RNase R RNA processing and degradation, bacterial
fig|6666666.229926.peg.283 CDS AEJM01000006.1 30717 31772 3 + 1056 Rod shape-determining protein MreB Bacterial Cell Division;
Bacterial Cytoskeleton
fig|6666666.229926.peg.284 CDS AEJM01000006.1 31842 32915 3 + 1074 Rod shape-determining protein MreC Bacterial Cell Division;
Bacterial Cytoskeleton;
CBSS-354.1.peg.2917
fig|6666666.229926.peg.285 CDS AEJM01000006.1 32915 33403 2 + 489 Rod shape-determining protein MreD Bacterial Cell Division;
Bacterial Cytoskeleton;
CBSS-354.1.peg.2917
fig|6666666.229926.peg.286 CDS AEJM01000006.1 33863 33513 -2 - 351 LSU ribosomal protein L19p Ribosome LSU bacterial
fig|6666666.229926.peg.287 CDS AEJM01000006.1 34638 33889 -3 - 750 tRNA (Guanine37-N1) -methyltransferase (EC 2.1.1.31) RNA methylation;
Ribosome biogenesis bacterial;
tRNA modification Bacteria
fig|6666666.229926.peg.288 CDS AEJM01000006.1 35222 34695 -2 - 528 16S rRNA processing protein RimM Ribosome biogenesis bacterial
fig|6666666.229926.peg.289 CDS AEJM01000006.1 35496 35248 -3 - 249 SSU ribosomal protein S16p Ribosome SSU bacterial
fig|6666666.229926.peg.290 CDS AEJM01000006.1 37271 35985 -2 - 1287 Xaa-Pro aminopeptidase (EC 3.4.11.9) Aminopeptidases (EC 3.4.11.-);
CBSS-87626.3.peg.3639
fig|6666666.229926.peg.291 CDS AEJM01000006.1 37860 37300 -3 - 561 FIG001590: Putative conserved exported protein precursor CBSS-87626.3.peg.3639
fig|6666666.229926.peg.292 CDS AEJM01000006.1 37851 38000 3 + 150 hypothetical protein - none -
fig|6666666.229926.peg.293 CDS AEJM01000006.1 38019 38345 3 + 327 Z-ring-associated protein ZapA Bacterial Cytoskeleton
fig|6666666.229926.peg.294 CDS AEJM01000006.1 38639 39214 2 + 576 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) 5-FCL-like protein;
Folate Biosynthesis;
One-carbon metabolism by tetrahydropterines
fig|6666666.229926.peg.295 CDS AEJM01000006.1 40038 39250 -3 - 789 Probable component of the lipoprotein assembly complex (forms a complex with YaeT, YfgL, and NlpB) Lipopolysaccharide assembly
fig|6666666.229926.peg.296 CDS AEJM01000006.1 40145 41119 2 + 975 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) RNA pseudouridine syntheses;
Ribosome biogenesis bacterial
fig|6666666.229926.peg.297 CDS AEJM01000006.1 41121 41858 3 + 738 COG1496: Uncharacterized conserved protein - none -
fig|6666666.229926.peg.298 CDS AEJM01000006.1 44053 41990 -1 - 2064 Phosphoglycerol transferase I (EC 2.7.8.20) Synthesis of osmoregulated periplasmic glucans
fig|6666666.229926.peg.299 CDS AEJM01000006.1 44620 44081 -1 - 540 Oxygen-insensitive NAD(P)H nitroreductase (EC 1.-.-.-) / Dihydropteridine reductase (EC 1.5.1.34) - none -
fig|6666666.229926.peg.300 CDS AEJM01000006.1 44740 44624 -1 - 117 Oxygen-insensitive NAD(P)H nitroreductase (EC 1.-.-.-) / Dihydropteridine reductase (EC 1.5.1.34) - none -
fig|6666666.229926.peg.301 CDS AEJM01000006.1 45151 44858 -1 - 294 COG1872 - none -
fig|6666666.229926.peg.302 CDS AEJM01000006.1 45735 45175 -3 - 561 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) CBSS-630.2.peg.3360
fig|6666666.229926.peg.303 CDS AEJM01000006.1 46698 45751 -3 - 948 Magnesium and cobalt transport protein CorA Magnesium transport
fig|6666666.229926.peg.304 CDS AEJM01000006.1 47998 47420 -1 - 579 Orf2 - none -
fig|6666666.229926.peg.305 CDS AEJM01000008.1 73 1224 1 + 1152 Coupling protein VirD4, ATPase required for T-DNA transfer - none -
fig|6666666.229926.peg.306 CDS AEJM01000008.1 1258 1695 1 + 438 hypothetical protein - none -
fig|6666666.229926.peg.307 CDS AEJM01000008.1 2375 2091 -2 - 285 hypothetical protein - none -
fig|6666666.229926.peg.308 CDS AEJM01000008.1 2539 2372 -1 - 168 hypothetical protein - none -
fig|6666666.229926.peg.309 CDS AEJM01000008.1 2800 2931 1 + 132 hypothetical protein - none -
fig|6666666.229926.peg.310 CDS AEJM01000008.1 2954 3595 2 + 642 Chromosome (plasmid) partitioning protein ParA Bacterial Cell Division;
Bacterial Cytoskeleton;
Cell Division Subsystem including YidCD;
RNA modification and chromosome partitioning cluster
fig|6666666.229926.peg.311 CDS AEJM01000009.1 177 1169 3 + 993 Mobile element protein - none -
fig|6666666.229926.peg.312 CDS AEJM01000010.1 1528 641 -1 - 888 Peptide transport system permease protein SapC - none -
fig|6666666.229926.peg.313 CDS AEJM01000010.1 2483 1518 -2 - 966 Peptide transport system permease protein SapB - none -
fig|6666666.229926.peg.314 CDS AEJM01000010.1 4141 2483 -1 - 1659 Peptide transport periplasmic protein sapA (TC 3.A.1.5.5) - none -
fig|6666666.229926.peg.315 CDS AEJM01000010.1 4390 5796 1 + 1407 Conserved protein YcjX with nucleoside triphosphate hydrolase domain A conserved operon linked to TyrR and possibly involved in virulence
fig|6666666.229926.peg.316 CDS AEJM01000010.1 5810 6889 2 + 1080 Membrane protein YcjF A conserved operon linked to TyrR and possibly involved in virulence
fig|6666666.229926.peg.317 CDS AEJM01000010.1 6966 7925 3 + 960 Transcriptional repressor protein TyrR Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate);
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229926.peg.318 CDS AEJM01000010.1 8256 8116 -3 - 141 GTP-binding protein HflX Hfl operon;
Universal GTPases
fig|6666666.229926.peg.319 CDS AEJM01000010.1 8567 8271 -2 - 297 RNA-binding protein Hfq Hfl operon;
Polyadenylation bacterial
fig|6666666.229926.peg.320 CDS AEJM01000010.1 9631 8687 -1 - 945 tRNA dimethylallyltransferase (EC 2.5.1.75) tRNA modification Bacteria;
tRNA processing
fig|6666666.229926.peg.321 CDS AEJM01000010.1 11497 9635 -1 - 1863 DNA mismatch repair protein MutL DNA repair, bacterial MutL-MutS system
fig|6666666.229926.peg.322 CDS AEJM01000010.1 12981 11497 -3 - 1485 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) Murein Hydrolases;
Recycling of Peptidoglycan Amino Acids
fig|6666666.229926.peg.323 CDS AEJM01000010.1 13472 12978 -2 - 495 TsaE protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA Scaffold proteins for [4Fe-4S] cluster assembly (MRP family);
YjeE;
YrdC-YciO-Sua5 protein family
fig|6666666.229926.peg.324 CDS AEJM01000010.1 15421 13628 -1 - 1794 Mlr4739 protein - none -
fig|6666666.229926.peg.325 CDS AEJM01000010.1 16728 15808 -3 - 921 RfbJ protein - none -
fig|6666666.229926.peg.326 CDS AEJM01000010.1 18244 16736 -1 - 1509 FIG00732228: membrane protein - none -
fig|6666666.229926.peg.327 CDS AEJM01000010.1 18848 18231 -2 - 618 Glycerate kinase (EC 2.7.1.31) Glycerate metabolism;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Glycine and Serine Utilization
fig|6666666.229926.peg.328 CDS AEJM01000010.1 20502 18877 -3 - 1626 Dca - none -
fig|6666666.229926.peg.329 CDS AEJM01000010.1 21459 20911 -3 - 549 3@1-to-5@1 oligoribonuclease (orn) RNA processing and degradation, bacterial
fig|6666666.229926.peg.330 CDS AEJM01000010.1 21530 22570 2 + 1041 Ribosome small subunit-stimulated GTPase EngC Universal GTPases
fig|6666666.229926.peg.331 CDS AEJM01000010.1 22791 23048 3 + 258 Phosphotransferase system, phosphocarrier protein HPr Fructose utilization;
Mannitol Utilization
fig|6666666.229926.peg.332 CDS AEJM01000010.1 23179 24906 1 + 1728 Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) Fructose utilization;
Mannitol Utilization
fig|6666666.229926.peg.333 CDS AEJM01000010.1 24968 25468 2 + 501 PTS system, glucose-specific IIA component - none -
fig|6666666.229926.peg.334 CDS AEJM01000010.1 27633 25594 -3 - 2040 Oligopeptidase A (EC 3.4.24.70) Protein degradation
fig|6666666.229926.peg.335 CDS AEJM01000010.1 27757 28122 1 + 366 FIG039061: hypothetical protein related to heme utilization - none -
fig|6666666.229926.peg.336 CDS AEJM01000010.1 28178 29716 2 + 1539 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229926.peg.337 CDS AEJM01000010.1 30709 30122 -1 - 588 Aminodeoxychorismate lyase (EC 4.1.3.38) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Folate Biosynthesis;
Tryptophan synthesis
fig|6666666.229926.peg.338 CDS AEJM01000010.1 31686 30712 -3 - 975 Para-aminobenzoate synthase, aminase component (EC 2.6.1.85) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Folate Biosynthesis;
Tryptophan synthesis
fig|6666666.229926.peg.339 CDS AEJM01000010.1 31789 32355 1 + 567 Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Folate Biosynthesis;
Tryptophan synthesis
fig|6666666.229926.peg.340 CDS AEJM01000010.1 32511 33455 3 + 945 Hydroxypyruvate reductase (EC 1.1.1.81) Glycerate metabolism;
Glycolate, glyoxylate interconversions
fig|6666666.229926.peg.341 CDS AEJM01000010.1 33613 33942 1 + 330 Ethidium bromide-methyl viologen resistance protein EmrE - none -
fig|6666666.229926.peg.342 CDS AEJM01000010.1 34321 35505 1 + 1185 Lipoprotein releasing system transmembrane protein LolC Lipopolysaccharide assembly;
Lipoprotein sorting system
fig|6666666.229926.peg.343 CDS AEJM01000010.1 35521 36207 1 + 687 Lipoprotein releasing system ATP-binding protein LolD Lipopolysaccharide assembly;
Lipoprotein sorting system
fig|6666666.229926.peg.344 CDS AEJM01000010.1 36207 37457 3 + 1251 Lipoprotein releasing system transmembrane protein LolE Lipopolysaccharide assembly;
Lipoprotein sorting system
fig|6666666.229926.peg.345 CDS AEJM01000010.1 37558 38637 1 + 1080 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha (EC 2.5.1.54) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229926.peg.346 CDS AEJM01000010.1 38768 38646 -2 - 123 hypothetical protein - none -
fig|6666666.229926.peg.347 CDS AEJM01000010.1 38783 40189 2 + 1407 Replicative DNA helicase (EC 3.6.1.-) - none -
fig|6666666.229926.peg.348 CDS AEJM01000010.1 40213 41295 1 + 1083 Alanine racemase, biosynthetic (EC 5.1.1.1) Alanine biosynthesis;
Pyruvate Alanine Serine Interconversions
fig|6666666.229926.peg.349 CDS AEJM01000010.1 41311 42960 1 + 1650 Glucose-6-phosphate isomerase (EC 5.3.1.9) Glycolysis and Gluconeogenesis
fig|6666666.229926.peg.350 CDS AEJM01000010.1 43269 43072 -3 - 198 putative membrane protein - none -
fig|6666666.229926.peg.351 CDS AEJM01000010.1 44166 43282 -3 - 885 hypothetical protein - none -
fig|6666666.229926.peg.352 CDS AEJM01000010.1 44412 44885 3 + 474 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster
fig|6666666.229926.peg.353 CDS AEJM01000010.1 44892 45317 3 + 426 Transcription termination protein NusB Riboflavin synthesis cluster;
Transcription factors bacterial
fig|6666666.229926.peg.354 CDS AEJM01000010.1 45336 46319 3 + 984 Thiamine-monophosphate kinase (EC 2.7.4.16) 5-FCL-like protein;
Riboflavin synthesis cluster;
Thiamin biosynthesis
fig|6666666.229926.peg.355 CDS AEJM01000010.1 46329 46829 3 + 501 Phosphatidylglycerophosphatase A (EC 3.1.3.27) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Riboflavin synthesis cluster
fig|6666666.229926.peg.356 CDS AEJM01000010.1 46829 47452 2 + 624 L-lysine permease - none -
fig|6666666.229926.peg.357 CDS AEJM01000010.1 47474 48286 2 + 813 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229926.peg.358 CDS AEJM01000010.1 48326 48445 2 + 120 hypothetical protein - none -
fig|6666666.229926.peg.359 CDS AEJM01000010.1 48646 48398 -1 - 249 Ferredoxin Soluble cytochromes and functionally related electron carriers
fig|6666666.229926.peg.360 CDS AEJM01000010.1 50130 49000 -3 - 1131 Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) Ribonucleotide reduction
fig|6666666.229926.peg.361 CDS AEJM01000010.1 53048 50778 -2 - 2271 Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) Ribonucleotide reduction
fig|6666666.229926.peg.362 CDS AEJM01000010.1 53364 53188 -3 - 177 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229926.peg.363 CDS AEJM01000010.1 56275 53351 -1 - 2925 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229926.peg.364 CDS AEJM01000010.1 56477 56280 -2 - 198 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229926.peg.365 CDS AEJM01000010.1 56752 56588 -1 - 165 Putative DNA-binding protein in cluster with Type I restriction-modification system Restriction-Modification System
fig|6666666.229926.peg.366 CDS AEJM01000010.1 57838 56756 -1 - 1083 Anticodon nuclease - none -
fig|6666666.229926.peg.367 CDS AEJM01000010.1 59070 57844 -3 - 1227 Type I restriction-modification system, specificity subunit S (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229926.peg.368 CDS AEJM01000010.1 59320 59060 -1 - 261 Putative DNA-binding protein in cluster with Type I restriction-modification system Restriction-Modification System
fig|6666666.229926.peg.369 CDS AEJM01000010.1 59943 59410 -3 - 534 Type I restriction-modification system, DNA-methyltransferase subunit M (EC 2.1.1.72) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229926.peg.370 CDS AEJM01000010.1 60506 59931 -2 - 576 Type I restriction-modification system, DNA-methyltransferase subunit M (EC 2.1.1.72) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229926.peg.371 CDS AEJM01000010.1 60961 60491 -1 - 471 Type I restriction-modification system, DNA-methyltransferase subunit M (EC 2.1.1.72) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229926.peg.372 CDS AEJM01000010.1 61256 61426 2 + 171 hypothetical protein - none -
fig|6666666.229926.peg.373 CDS AEJM01000010.1 61454 62482 2 + 1029 Ferric iron ABC transporter, iron-binding protein Iron acquisition in Streptococcus
fig|6666666.229926.peg.374 CDS AEJM01000010.1 62482 64515 1 + 2034 Ferric iron ABC transporter, permease protein Iron acquisition in Streptococcus
fig|6666666.229926.peg.375 CDS AEJM01000010.1 64499 65539 2 + 1041 Sulfate and thiosulfate import ATP-binding protein CysA (EC 3.6.3.25) Cysteine Biosynthesis;
Uptake of selenate and selenite
fig|6666666.229926.peg.376 CDS AEJM01000010.1 67645 65594 -1 - 2052 Periplasmic alpha-amylase (EC 3.2.1.1) Maltose and Maltodextrin Utilization
fig|6666666.229926.peg.377 CDS AEJM01000011.1 1857 700 -3 - 1158 IncQ plasmid conjugative transfer DNA nicking endonuclease TraR (pTi VirD2 homolog) - none -
fig|6666666.229926.peg.378 CDS AEJM01000011.1 2970 2839 -3 - 132 hypothetical protein - none -
fig|6666666.229926.peg.379 CDS AEJM01000011.1 2984 3253 2 + 270 hypothetical protein - none -
fig|6666666.229926.peg.380 CDS AEJM01000011.1 3550 3939 1 + 390 sigma factor - none -
fig|6666666.229926.peg.381 CDS AEJM01000011.1 3980 4354 2 + 375 hypothetical protein - none -
fig|6666666.229926.peg.382 CDS AEJM01000011.1 4707 4351 -3 - 357 hypothetical protein - none -
fig|6666666.229926.peg.383 CDS AEJM01000011.1 4662 5021 3 + 360 hypothetical protein - none -
fig|6666666.229926.peg.384 CDS AEJM01000011.1 5110 5616 1 + 507 hypothetical protein - none -
fig|6666666.229926.peg.385 CDS AEJM01000011.1 6112 6255 1 + 144 hypothetical protein - none -
fig|6666666.229926.peg.386 CDS AEJM01000011.1 6268 6384 1 + 117 hypothetical protein - none -
fig|6666666.229926.peg.387 CDS AEJM01000012.1 69 188 3 + 120 hypothetical protein - none -
fig|6666666.229926.peg.388 CDS AEJM01000012.1 241 360 1 + 120 filamentation induced by cAMP protein Fic-like protein - none -
fig|6666666.229926.peg.389 CDS AEJM01000012.1 1293 2189 3 + 897 Cobalt-zinc-cadmium resistance protein CzcD Cobalt-zinc-cadmium resistance
fig|6666666.229926.peg.390 CDS AEJM01000012.1 2436 2275 -3 - 162 hypothetical protein - none -
fig|6666666.229926.peg.391 CDS AEJM01000013.1 22 462 1 + 441 hypothetical protein - none -
fig|6666666.229926.peg.392 CDS AEJM01000013.1 474 911 3 + 438 Single-stranded DNA-binding protein DNA repair, bacterial;
DNA repair, bacterial RecFOR pathway
fig|6666666.229926.peg.393 CDS AEJM01000013.1 936 1586 3 + 651 Bores hole in peptidoglycan layer allowing type IV secretion complex assembly to occur (VirB1) - none -
fig|6666666.229926.peg.394 CDS AEJM01000013.1 1667 1900 2 + 234 hypothetical protein - none -
fig|6666666.229926.peg.395 CDS AEJM01000013.1 2180 4684 2 + 2505 ATPase provides energy for both assembly of type IV secretion complex and secretion of T-DNA complex (VirB4) - none -
fig|6666666.229926.peg.396 CDS AEJM01000013.1 4695 5423 3 + 729 Minor pilin of type IV secretion complex, VirB5 - none -
fig|6666666.229926.peg.397 CDS AEJM01000013.1 5553 5669 3 + 117 hypothetical protein - none -
fig|6666666.229926.peg.398 CDS AEJM01000013.1 5681 6682 2 + 1002 Inner membrane protein of type IV secretion of T-DNA complex, VirB6 - none -
fig|6666666.229926.peg.399 CDS AEJM01000013.1 6752 6895 2 + 144 hypothetical protein - none -
fig|6666666.229926.peg.400 CDS AEJM01000013.1 6892 7578 1 + 687 Inner membrane protein forms channel for type IV secretion of T-DNA complex, VirB8 - none -
fig|6666666.229926.peg.401 CDS AEJM01000013.1 7580 8437 2 + 858 Outer membrane and periplasm component of type IV secretion of T-DNA complex, has secretin-like domain, VirB9 - none -
fig|6666666.229926.peg.402 CDS AEJM01000013.1 8447 9556 2 + 1110 Inner membrane protein forms channel for type IV secretion of T-DNA complex (VirB10) - none -
fig|6666666.229926.peg.403 CDS AEJM01000013.1 9569 10600 2 + 1032 ATPase provides energy for both assembly of type IV secretion complex and secretion of T-DNA complex (VirB11) - none -
fig|6666666.229926.peg.404 CDS AEJM01000014.1 389 210 -2 - 180 hypothetical protein - none -
fig|6666666.229926.peg.405 CDS AEJM01000014.1 1735 848 -1 - 888 HflC protein Hfl operon;
Scaffold proteins for [4Fe-4S] cluster assembly (MRP family)
fig|6666666.229926.peg.406 CDS AEJM01000014.1 2988 1735 -3 - 1254 HflK protein Hfl operon;
Scaffold proteins for [4Fe-4S] cluster assembly (MRP family)
fig|6666666.229926.peg.407 CDS AEJM01000014.1 3803 3084 -2 - 720 4@1-phosphopantetheinyl transferase (EC 2.7.8.-) Fatty Acid Biosynthesis FASII
fig|6666666.229926.peg.408 CDS AEJM01000014.1 5135 3861 -2 - 1275 Threonine synthase (EC 4.2.3.1) Threonine and Homoserine Biosynthesis
fig|6666666.229926.peg.409 CDS AEJM01000014.1 5630 5247 -2 - 384 hypothetical protein - none -
fig|6666666.229926.peg.410 CDS AEJM01000014.1 6602 5658 -2 - 945 Homoserine kinase (EC 2.7.1.39) CBSS-269482.1.peg.1294;
Methionine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229926.peg.411 CDS AEJM01000014.1 9061 6614 -1 - 2448 Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) CBSS-216591.1.peg.168;
Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch;
Methionine Biosynthesis;
Threonine and Homoserine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229926.peg.412 CDS AEJM01000014.1 9281 9150 -2 - 132 hypothetical protein - none -
fig|6666666.229926.peg.413 CDS AEJM01000014.1 9415 10803 1 + 1389 Nicotinamide phosphoribosyltransferase (EC 2.4.2.12) NAD and NADP cofactor biosynthesis global
fig|6666666.229926.peg.414 CDS AEJM01000014.1 10796 11491 2 + 696 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC A Hypothetical Protein Related to Proline Metabolism;
CBSS-630.2.peg.3360
fig|6666666.229926.peg.415 CDS AEJM01000014.1 12376 11540 -1 - 837 L-proline glycine betaine ABC transport system permease protein ProV (TC 3.A.1.12.1) Choline and Betaine Uptake and Betaine Biosynthesis
fig|6666666.229926.peg.416 CDS AEJM01000014.1 14200 12689 -1 - 1512 L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1) / Osmotic adaptation Choline and Betaine Uptake and Betaine Biosynthesis
fig|6666666.229926.peg.417 CDS AEJM01000014.1 15339 14335 -3 - 1005 Outer membrane protein NlpB, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and YfgL); Lipoprotein-34 precursor Lipopolysaccharide assembly
fig|6666666.229926.peg.418 CDS AEJM01000014.1 16345 15452 -1 - 894 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229926.peg.419 CDS AEJM01000014.1 16503 16967 3 + 465 Thiol peroxidase, Bcp-type (EC 1.11.1.15) CBSS-316057.3.peg.3521;
Thioredoxin-disulfide reductase
fig|6666666.229926.peg.420 CDS AEJM01000014.1 19823 17031 -2 - 2793 Signal recognition particle receptor protein FtsY (=alpha subunit) (TC 3.A.5.1.1) Bacterial Cell Division;
Bacterial signal recognition particle (SRP);
Universal GTPases
fig|6666666.229926.peg.421 CDS AEJM01000014.1 21902 20049 -2 - 1854 GTP-binding protein TypA/BipA Universal GTPases
fig|6666666.229926.peg.422 CDS AEJM01000014.1 22290 23699 3 + 1410 Glutamine synthetase type I (EC 6.3.1.2) Ammonia assimilation;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Glutamine synthetases;
Peptidoglycan Biosynthesis
fig|6666666.229926.peg.423 CDS AEJM01000014.1 24533 23808 -2 - 726 Integral membrane protein TerC - none -
fig|6666666.229926.peg.424 CDS AEJM01000014.1 25266 24598 -3 - 669 DNA mismatch repair endonuclease MutH DNA repair, bacterial
fig|6666666.229926.peg.425 CDS AEJM01000014.1 25802 25263 -2 - 540 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) DNA repair, bacterial
fig|6666666.229926.peg.426 CDS AEJM01000014.1 27311 25878 -2 - 1434 Long-chain fatty acid transport protein - none -
fig|6666666.229926.peg.427 CDS AEJM01000014.1 27381 27518 3 + 138 hypothetical protein - none -
fig|6666666.229926.peg.428 CDS AEJM01000014.1 27515 27805 2 + 291 FIG00696346: hypothetical protein - none -
fig|6666666.229926.peg.429 CDS AEJM01000014.1 31819 30548 -1 - 1272 UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7) CBSS-12149.1.peg.3301;
Peptidoglycan Biosynthesis;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229926.peg.430 CDS AEJM01000014.1 32093 31836 -2 - 258 YrbA protein Broadly distributed proteins not in subsystems;
CBSS-12149.1.peg.3301
fig|6666666.229926.peg.431 CDS AEJM01000014.1 32362 32093 -1 - 270 Uncharacterized protein YrbB CBSS-12149.1.peg.3301
fig|6666666.229926.peg.432 CDS AEJM01000014.1 33097 32456 -1 - 642 Uncharacterized ABC transporter, auxiliary component YrbC CBSS-12149.1.peg.3301;
Lipopolysaccharide assembly
fig|6666666.229926.peg.433 CDS AEJM01000014.1 33635 33126 -2 - 510 Uncharacterized ABC transporter, periplasmic component YrbD CBSS-12149.1.peg.3301;
Lipopolysaccharide assembly
fig|6666666.229926.peg.434 CDS AEJM01000014.1 34443 33658 -3 - 786 Uncharacterized ABC transporter, permease component YrbE CBSS-12149.1.peg.3301;
Lipopolysaccharide assembly
fig|6666666.229926.peg.435 CDS AEJM01000014.1 35234 34437 -2 - 798 Uncharacterized ABC transporter, ATP-binding protein YrbF CBSS-12149.1.peg.3301;
Lipopolysaccharide assembly
fig|6666666.229926.peg.436 CDS AEJM01000014.1 35406 35591 3 + 186 hypothetical protein - none -
fig|6666666.229926.peg.437 CDS AEJM01000014.1 36682 35888 -1 - 795 possible DNA-binding protein - none -
fig|6666666.229926.peg.438 CDS AEJM01000014.1 36803 37069 2 + 267 FIG00697940: hypothetical protein - none -
fig|6666666.229926.peg.439 CDS AEJM01000014.1 37082 37258 2 + 177 hypothetical protein - none -
fig|6666666.229926.peg.440 CDS AEJM01000014.1 37459 37812 1 + 354 hypothetical protein - none -
fig|6666666.229926.peg.441 CDS AEJM01000014.1 38044 38313 1 + 270 hypothetical protein - none -
fig|6666666.229926.peg.442 CDS AEJM01000014.1 38633 38866 2 + 234 hypothetical protein - none -
fig|6666666.229926.peg.443 CDS AEJM01000014.1 39317 39892 2 + 576 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters Lipopolysaccharide assembly
fig|6666666.229926.peg.444 CDS AEJM01000014.1 39873 40391 3 + 519 LptA, protein essential for LPS transport across the periplasm KDO2-Lipid A biosynthesis;
Lipopolysaccharide assembly
fig|6666666.229926.peg.445 CDS AEJM01000014.1 40397 41122 2 + 726 Lipopolysaccharide ABC transporter, ATP-binding protein LptB KDO2-Lipid A biosynthesis;
Lipopolysaccharide assembly
fig|6666666.229926.peg.446 CDS AEJM01000014.1 41126 41659 2 + 534 PTS IIA-like nitrogen-regulatory protein PtsN - none -
fig|6666666.229926.peg.447 CDS AEJM01000014.1 41688 42542 3 + 855 Hypothetical ATP-binding protein UPF0042, contains P-loop - none -
fig|6666666.229926.peg.448 CDS AEJM01000014.1 43882 42548 -1 - 1335 Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) DNA repair, bacterial;
Purine salvage cluster
fig|6666666.229926.peg.449 CDS AEJM01000014.1 44306 43887 -2 - 420 FIG074102: hypothetical protein - none -
fig|6666666.229926.peg.450 CDS AEJM01000014.1 45077 44457 -2 - 621 FIG074102: hypothetical protein - none -
fig|6666666.229926.peg.451 CDS AEJM01000014.1 45404 45111 -2 - 294 UPF0125 protein yfjF - none -
fig|6666666.229926.peg.452 CDS AEJM01000014.1 45828 45397 -3 - 432 Putative oligoketide cyclase/lipid transport protein, similarity with yeast ubiquinone-binding protein YOL008W - none -
fig|6666666.229926.peg.453 CDS AEJM01000014.1 45901 46317 1 + 417 conserved hypothetical protein; possible membrane protein - none -
fig|6666666.229926.peg.454 CDS AEJM01000014.1 47416 46412 -1 - 1005 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis;
Pyridoxin (Vitamin B6) Biosynthesis
fig|6666666.229926.peg.455 CDS AEJM01000014.1 47657 48295 2 + 639 Guanylate kinase (EC 2.7.4.8) CBSS-323097.3.peg.2594;
Purine conversions
fig|6666666.229926.peg.456 CDS AEJM01000014.1 48352 48618 1 + 267 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) CBSS-176299.4.peg.1292;
RNA polymerase bacterial
fig|6666666.229926.peg.457 CDS AEJM01000014.1 48664 50784 1 + 2121 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II / Guanosine-3@1,5@1-bis(diphosphate) 3@1-pyrophosphohydrolase (EC 3.1.7.2) CBSS-176299.4.peg.1292;
CBSS-176299.4.peg.1292;
Stringent Response, (p)ppGpp metabolism;
Stringent Response, (p)ppGpp metabolism
fig|6666666.229926.peg.458 CDS AEJM01000014.1 50786 52867 2 + 2082 ATP-dependent DNA helicase RecG (EC 3.6.1.-) - none -
fig|6666666.229926.peg.459 CDS AEJM01000014.1 52860 53357 3 + 498 Chorismate--pyruvate lyase (EC 4.1.3.40) Ubiquinone Biosynthesis
fig|6666666.229926.peg.460 CDS AEJM01000014.1 53388 54215 3 + 828 Glutamate racemase (EC 5.1.1.3) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Peptidoglycan Biosynthesis
fig|6666666.229926.peg.461 CDS AEJM01000015.1 17 634 2 + 618 Methionyl-tRNA formyltransferase (EC 2.1.2.9) Conserved gene cluster associated with Met-tRNA formyltransferase;
Translation initiation factors bacterial
fig|6666666.229926.peg.462 CDS AEJM01000015.1 634 1989 1 + 1356 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) - none -
fig|6666666.229926.peg.463 CDS AEJM01000015.1 2013 3389 3 + 1377 Trk system potassium uptake protein TrkA Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Hyperosmotic potassium uptake;
Potassium homeostasis;
Potassium homeostasis
fig|6666666.229926.peg.464 CDS AEJM01000015.1 3499 3894 1 + 396 Large-conductance mechanosensitive channel Potassium homeostasis
fig|6666666.229926.peg.465 CDS AEJM01000015.1 3989 4423 2 + 435 Ribonuclease E inhibitor RraB RNA processing and degradation, bacterial
fig|6666666.229926.peg.466 CDS AEJM01000015.1 4474 5193 1 + 720 probable periplasmic protein NMA1059 - none -
fig|6666666.229926.peg.467 CDS AEJM01000015.1 5287 5895 1 + 609 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) G3E family of P-loop GTPases (metallocenter biosynthesis);
Peptidyl-prolyl cis-trans isomerase;
Potassium homeostasis
fig|6666666.229926.peg.468 CDS AEJM01000015.1 6184 5966 -1 - 219 hypothetical protein - none -
fig|6666666.229926.peg.469 CDS AEJM01000015.1 6713 6309 -2 - 405 Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48) LMPTP YfkJ cluster;
Protein deglycation
fig|6666666.229926.peg.470 CDS AEJM01000015.1 8169 6838 -3 - 1332 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase Methylthiotransferases;
Ribosomal protein S12p Asp methylthiotransferase
fig|6666666.229926.peg.471 CDS AEJM01000015.1 8381 8665 2 + 285 hypothetical protein - none -
fig|6666666.229926.peg.472 CDS AEJM01000015.1 8616 8978 3 + 363 FIG00696564: hypothetical protein - none -
fig|6666666.229926.peg.473 CDS AEJM01000015.1 9146 9277 2 + 132 hypothetical protein - none -
fig|6666666.229926.peg.474 CDS AEJM01000015.1 9507 9271 -3 - 237 Arsenate reductase (EC 1.20.4.1) Anaerobic respiratory reductases;
Arsenic resistance;
Transcription repair cluster
fig|6666666.229926.peg.475 CDS AEJM01000015.1 9581 10642 2 + 1062 Putative permease PerM (= YfgO) - none -
fig|6666666.229926.peg.476 CDS AEJM01000015.1 10782 10669 -3 - 114 hypothetical protein - none -
fig|6666666.229926.peg.477 CDS AEJM01000015.1 11537 10779 -2 - 759 Uridine phosphorylase (EC 2.4.2.3) pyrimidine conversions
fig|6666666.229926.peg.478 CDS AEJM01000015.1 12022 11570 -1 - 453 Regulatory protein AsnC CBSS-262728.1.peg.1737
fig|6666666.229926.peg.479 CDS AEJM01000015.1 12188 13180 2 + 993 Aspartate--ammonia ligase (EC 6.3.1.1) CBSS-262728.1.peg.1737;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229926.peg.480 CDS AEJM01000015.1 14222 13236 -2 - 987 tRNA dihydrouridine synthase A - none -
fig|6666666.229926.peg.481 CDS AEJM01000015.1 15499 14225 -1 - 1275 Chloride channel protein - none -
fig|6666666.229926.peg.482 CDS AEJM01000015.1 15860 16864 2 + 1005 Ornithine carbamoyltransferase (EC 2.1.3.3) Arginine Deiminase Pathway;
Arginine and Ornithine Degradation
fig|6666666.229926.peg.483 CDS AEJM01000015.1 16874 17806 2 + 933 Carbamate kinase (EC 2.7.2.2) Arginine Deiminase Pathway;
Arginine and Ornithine Degradation;
Polyamine Metabolism
fig|6666666.229926.peg.484 CDS AEJM01000015.1 17920 19449 1 + 1530 Arginine/ornithine antiporter ArcD Arginine Deiminase Pathway;
Arginine and Ornithine Degradation;
Polyamine Metabolism
fig|6666666.229926.peg.485 CDS AEJM01000015.1 19539 20006 3 + 468 Transcriptional regulator, AsnC family - none -
fig|6666666.229926.peg.486 CDS AEJM01000015.1 20318 20629 2 + 312 SSU ribosomal protein S10p (S20e) Ribosome SSU bacterial
fig|6666666.229926.peg.487 CDS AEJM01000015.1 20646 21272 3 + 627 LSU ribosomal protein L3p (L3e) Ribosome LSU bacterial
fig|6666666.229926.peg.488 CDS AEJM01000015.1 21288 21890 3 + 603 LSU ribosomal protein L4p (L1e) Ribosome LSU bacterial
fig|6666666.229926.peg.489 CDS AEJM01000015.1 21887 22189 2 + 303 LSU ribosomal protein L23p (L23Ae) Ribosome LSU bacterial
fig|6666666.229926.peg.490 CDS AEJM01000015.1 22210 23031 1 + 822 LSU ribosomal protein L2p (L8e) Ribosome LSU bacterial
fig|6666666.229926.peg.491 CDS AEJM01000015.1 23185 23331 1 + 147 SSU ribosomal protein S19p (S15e) Ribosome SSU bacterial
fig|6666666.229926.peg.492 CDS AEJM01000015.1 23342 23674 2 + 333 LSU ribosomal protein L22p (L17e) Ribosome LSU bacterial
fig|6666666.229926.peg.493 CDS AEJM01000015.1 23691 24398 3 + 708 SSU ribosomal protein S3p (S3e) Ribosome SSU bacterial
fig|6666666.229926.peg.494 CDS AEJM01000015.1 24412 24822 1 + 411 LSU ribosomal protein L16p (L10e) Ribosome LSU bacterial
fig|6666666.229926.peg.495 CDS AEJM01000015.1 24822 25013 3 + 192 LSU ribosomal protein L29p (L35e) Ribosome LSU bacterial
fig|6666666.229926.peg.496 CDS AEJM01000015.1 25013 25270 2 + 258 SSU ribosomal protein S17p (S11e) Ribosome SSU bacterial
fig|6666666.229926.peg.497 CDS AEJM01000015.1 25382 25221 -2 - 162 hypothetical protein - none -
fig|6666666.229926.peg.498 CDS AEJM01000015.1 25524 25895 3 + 372 LSU ribosomal protein L14p (L23e) Ribosome LSU bacterial
fig|6666666.229926.peg.499 CDS AEJM01000015.1 25906 26217 1 + 312 LSU ribosomal protein L24p (L26e) Ribosome LSU bacterial
fig|6666666.229926.peg.500 CDS AEJM01000015.1 26346 26774 3 + 429 LSU ribosomal protein L5p (L11e) Ribosome LSU bacterial
fig|6666666.229926.peg.501 CDS AEJM01000015.1 26787 27092 3 + 306 SSU ribosomal protein S14p (S29e) @ SSU ribosomal protein S14p (S29e), zinc-independent Ribosome SSU bacterial;
Ribosome SSU bacterial
fig|6666666.229926.peg.502 CDS AEJM01000015.1 27129 27521 3 + 393 SSU ribosomal protein S8p (S15Ae) Ribosome SSU bacterial
fig|6666666.229926.peg.503 CDS AEJM01000015.1 27537 28070 3 + 534 LSU ribosomal protein L6p (L9e) Ribosome LSU bacterial
fig|6666666.229926.peg.504 CDS AEJM01000015.1 28084 28437 1 + 354 LSU ribosomal protein L18p (L5e) Ribosome LSU bacterial
fig|6666666.229926.peg.505 CDS AEJM01000015.1 28453 28953 1 + 501 SSU ribosomal protein S5p (S2e) Ribosome SSU bacterial
fig|6666666.229926.peg.506 CDS AEJM01000015.1 29143 29577 1 + 435 LSU ribosomal protein L15p (L27Ae) Ribosome LSU bacterial
fig|6666666.229926.peg.507 CDS AEJM01000015.1 29581 30906 1 + 1326 Preprotein translocase secY subunit (TC 3.A.5.1.1) - none -
fig|6666666.229926.peg.508 CDS AEJM01000015.1 30932 31045 2 + 114 LSU ribosomal protein L36p Ribosome LSU bacterial
fig|6666666.229926.peg.509 CDS AEJM01000015.1 31187 31543 2 + 357 SSU ribosomal protein S13p (S18e) Ribosome SSU bacterial
fig|6666666.229926.peg.510 CDS AEJM01000015.1 31559 31948 2 + 390 SSU ribosomal protein S11p (S14e) Ribosome SSU bacterial
fig|6666666.229926.peg.511 CDS AEJM01000015.1 32167 32598 1 + 432 SSU ribosomal protein S4p (S9e) Ribosome SSU bacterial
fig|6666666.229926.peg.512 CDS AEJM01000015.1 32627 33616 2 + 990 DNA-directed RNA polymerase alpha subunit (EC 2.7.7.6) RNA polymerase bacterial
fig|6666666.229926.peg.513 CDS AEJM01000015.1 33658 34047 1 + 390 LSU ribosomal protein L17p Ribosome LSU bacterial
fig|6666666.229926.peg.514 CDS AEJM01000016.1 917 141 -2 - 777 Formate hydrogenlyase subunit 7 Formate hydrogenase
fig|6666666.229926.peg.515 CDS AEJM01000016.1 1561 914 -1 - 648 Formate hydrogenlyase complex 3 iron-sulfur protein; Formate hydrogenlyase subunit 6; Ni,Fe-hydrogenase III medium subunit Formate hydrogenase
fig|6666666.229926.peg.516 CDS AEJM01000016.1 3305 1575 -2 - 1731 Formate hydrogenlyase subunit 5 Formate hydrogenase
fig|6666666.229926.peg.517 CDS AEJM01000016.1 4864 3326 -1 - 1539 Hydrogenase-4 component F - none -
fig|6666666.229926.peg.518 CDS AEJM01000016.1 5507 4869 -2 - 639 Hydrogenase-4 component E - none -
fig|6666666.229926.peg.519 CDS AEJM01000016.1 6963 5518 -3 - 1446 Hydrogenase-4 component D - none -
fig|6666666.229926.peg.520 CDS AEJM01000016.1 7938 6976 -3 - 963 Hydrogenase-4 component C - none -
fig|6666666.229926.peg.521 CDS AEJM01000016.1 9970 7949 -1 - 2022 Hydrogenase-4 component B / Formate hydrogenlyase subunit 3 Formate hydrogenase
fig|6666666.229926.peg.522 CDS AEJM01000016.1 10603 10004 -1 - 600 Hydrogenase-4 component A - none -
fig|6666666.229926.peg.523 CDS AEJM01000016.1 10899 13184 3 + 2286 [NiFe] hydrogenase metallocenter assembly protein HypF G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229926.peg.524 CDS AEJM01000016.1 13660 13544 -1 - 117 hypothetical protein - none -
fig|6666666.229926.peg.525 CDS AEJM01000016.1 14522 13809 -2 - 714 Formate dehydrogenase -O, gamma subunit (EC 1.2.1.2) Anaerobic respiratory reductases;
Formate hydrogenase
fig|6666666.229926.peg.526 CDS AEJM01000016.1 15447 14515 -3 - 933 Formate dehydrogenase O beta subunit (EC 1.2.1.2) Formate dehydrogenase;
Formate hydrogenase
fig|6666666.229926.peg.527 CDS AEJM01000016.1 18559 15449 -1 - 3111 Formate dehydrogenase N alpha subunit (EC 1.2.1.2) @ selenocysteine-containing Formate dehydrogenase;
Formate hydrogenase
fig|6666666.229926.peg.528 CDS AEJM01000016.1 18780 19604 3 + 825 Formate dehydrogenase chain D (EC 1.2.1.2) Formate hydrogenase
fig|6666666.229926.peg.529 CDS AEJM01000016.1 19653 20651 3 + 999 Gluconate utilization system Gnt-I transcriptional repressor D-gluconate and ketogluconates metabolism
fig|6666666.229926.peg.530 CDS AEJM01000016.1 20602 20724 1 + 123 hypothetical protein - none -
fig|6666666.229926.peg.531 CDS AEJM01000016.1 21239 20721 -2 - 519 Gluconokinase (EC 2.7.1.12) D-gluconate and ketogluconates metabolism;
Entner-Doudoroff Pathway
fig|6666666.229926.peg.532 CDS AEJM01000016.1 21457 22806 1 + 1350 Low-affinity gluconate/H+ symporter GntU D-gluconate and ketogluconates metabolism
fig|6666666.229926.peg.533 CDS AEJM01000016.1 22980 25154 3 + 2175 ATP-dependent DNA helicase UvrD/PcrA DNA repair, bacterial UvrD and related helicases
fig|6666666.229926.peg.534 CDS AEJM01000016.1 26115 25288 -3 - 828 DNA ligase (ATP) (EC 6.5.1.1) DNA ligases
fig|6666666.229926.peg.535 CDS AEJM01000016.1 26319 26158 -3 - 162 hypothetical protein - none -
fig|6666666.229926.peg.536 CDS AEJM01000016.1 27035 26292 -2 - 744 Probable transmembrane protein - none -
fig|6666666.229926.peg.537 CDS AEJM01000016.1 27302 27048 -2 - 255 YoeB toxin protein Toxin-antitoxin replicon stabilization systems
fig|6666666.229926.peg.538 CDS AEJM01000016.1 27550 27299 -1 - 252 YefM protein (antitoxin to YoeB) Toxin-antitoxin replicon stabilization systems
fig|6666666.229926.peg.539 CDS AEJM01000016.1 28615 27659 -1 - 957 Polysaccharide polymerization protein - none -
fig|6666666.229926.peg.540 CDS AEJM01000016.1 30135 28612 -3 - 1524 putative flippase - none -
fig|6666666.229926.peg.541 CDS AEJM01000016.1 30266 31042 2 + 777 Lipopolysaccharide core biosynthesis glycosyltransferase WadA - none -
fig|6666666.229926.peg.542 CDS AEJM01000016.1 31051 32244 1 + 1194 DNA for glycosyltransferase, lytic transglycosylase, dTDP-4-rhamnose reductase Rhamnose containing glycans
fig|6666666.229926.peg.543 CDS AEJM01000016.1 32244 33125 3 + 882 Glycosyltransferase - none -
fig|6666666.229926.peg.544 CDS AEJM01000016.1 33218 34003 2 + 786 Glucosyl-3-phosphoglycerate synthase (EC 2.4.1.266) - none -
fig|6666666.229926.peg.545 CDS AEJM01000016.1 34123 33992 -1 - 132 hypothetical protein - none -
fig|6666666.229926.peg.546 CDS AEJM01000016.1 34122 35135 3 + 1014 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) Murein Hydrolases;
Peptidoglycan Biosynthesis
fig|6666666.229926.peg.547 CDS AEJM01000016.1 35205 36272 3 + 1068 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229926.peg.548 CDS AEJM01000016.1 36431 37222 2 + 792 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229926.peg.549 CDS AEJM01000016.1 37223 38101 2 + 879 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229926.peg.550 CDS AEJM01000016.1 38104 38643 1 + 540 dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229926.peg.551 CDS AEJM01000016.1 38660 39454 2 + 795 Teichoic acid translocation permease protein TagG Teichoic and lipoteichoic acids biosynthesis
fig|6666666.229926.peg.552 CDS AEJM01000016.1 39456 40652 3 + 1197 Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40) Rhamnose containing glycans;
Teichoic and lipoteichoic acids biosynthesis
fig|6666666.229926.peg.553 CDS AEJM01000016.1 40649 44956 2 + 4308 Glycosyltransferase (EC 2.4.1.-) - none -
fig|6666666.229926.peg.554 CDS AEJM01000016.1 45489 46436 3 + 948 O antigen biosynthesis rhamnosyltransferase rfbN (EC 2.4.1.-) - none -
fig|6666666.229926.peg.555 CDS AEJM01000016.1 46399 47817 1 + 1419 Undecaprenyl-phosphate galactosephosphotransferase (EC 2.7.8.6) - none -
fig|6666666.229926.peg.556 CDS AEJM01000016.1 48364 49167 1 + 804 Exodeoxyribonuclease III (EC 3.1.11.2) DNA repair, bacterial
fig|6666666.229926.peg.557 CDS AEJM01000016.1 49167 49961 3 + 795 DNA for glycosyltransferase, lytic transglycosylase, dTDP-4-rhamnose reductase Rhamnose containing glycans
fig|6666666.229926.peg.558 CDS AEJM01000016.1 49986 51014 3 + 1029 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229926.peg.559 CDS AEJM01000016.1 51832 51092 -1 - 741 FIG00698611: hypothetical protein - none -
fig|6666666.229926.peg.560 CDS AEJM01000016.1 52757 52104 -2 - 654 GTP cyclohydrolase II (EC 3.5.4.25) Molybdenum cofactor biosynthesis;
Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster
fig|6666666.229926.peg.561 CDS AEJM01000016.1 52840 53574 1 + 735 Phosphatidylglycerophosphatase B (EC 3.1.3.27) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Osmotic stress cluster
fig|6666666.229926.peg.562 CDS AEJM01000016.1 53625 54539 3 + 915 ROK family Glucokinase with ambiguous substrate specificity - none -
fig|6666666.229926.peg.563 CDS AEJM01000016.1 55180 54596 -1 - 585 Putative lipoprotein yceB precursor - none -
fig|6666666.229926.peg.564 CDS AEJM01000016.1 55343 55903 2 + 561 unknown - none -
fig|6666666.229926.peg.565 CDS AEJM01000016.1 55969 56709 1 + 741 serine/threonine protein kinase - none -
fig|6666666.229926.peg.566 CDS AEJM01000016.1 56706 56834 3 + 129 hypothetical protein - none -
fig|6666666.229926.peg.567 CDS AEJM01000016.1 57915 57049 -3 - 867 Acyl-CoA thioesterase II (EC 3.1.2.-) Acyl-CoA thioesterase II
fig|6666666.229926.peg.568 CDS AEJM01000016.1 59908 58175 -1 - 1734 Transport ATP-binding protein CydC Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229926.peg.569 CDS AEJM01000016.1 61671 59908 -3 - 1764 Transport ATP-binding protein CydD Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229926.peg.570 CDS AEJM01000016.1 62728 61775 -1 - 954 Thioredoxin reductase (EC 1.8.1.9) Thioredoxin-disulfide reductase;
pyrimidine conversions
fig|6666666.229926.peg.571 CDS AEJM01000016.1 63644 62787 -2 - 858 FIG000875: Thioredoxin domain-containing protein EC-YbbN - none -
fig|6666666.229926.peg.572 CDS AEJM01000016.1 63948 63820 -3 - 129 hypothetical protein - none -
fig|6666666.229926.peg.573 CDS AEJM01000016.1 64796 63975 -2 - 822 Aldose 1-epimerase - none -
fig|6666666.229926.peg.574 CDS AEJM01000016.1 64873 66789 1 + 1917 DinG family ATP-dependent helicase YoaA DNA repair, bacterial DinG and relatives
fig|6666666.229926.peg.575 CDS AEJM01000016.1 66811 67533 1 + 723 TsaB protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Ribosome biogenesis bacterial;
YgjD and YeaZ;
YjeE;
YrdC-YciO-Sua5 protein family
fig|6666666.229926.peg.576 CDS AEJM01000016.1 67565 68122 2 + 558 Starvation lipoprotein Slp paralog Carbon Starvation
fig|6666666.229926.peg.577 CDS AEJM01000016.1 68164 69714 1 + 1551 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) - none -
fig|6666666.229926.peg.578 CDS AEJM01000016.1 69687 69833 3 + 147 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) - none -
fig|6666666.229926.peg.579 CDS AEJM01000016.1 69900 71057 3 + 1158 Ribonuclease D (EC 3.1.26.3) tRNA processing
fig|6666666.229926.peg.580 CDS AEJM01000016.1 72530 71145 -2 - 1386 Cytochrome c551 peroxidase (EC 1.11.1.5) Protection from Reactive Oxygen Species
fig|6666666.229926.peg.581 CDS AEJM01000016.1 72870 73079 3 + 210 hypothetical protein - none -
fig|6666666.229926.peg.582 CDS AEJM01000016.1 73331 73558 2 + 228 hypothetical protein - none -
fig|6666666.229926.peg.583 CDS AEJM01000016.1 74329 75150 1 + 822 probable glucanotransferase (endo alpha-1,4 polygalactosaminidase related protein) - none -
fig|6666666.229926.peg.584 CDS AEJM01000016.1 75675 76601 3 + 927 Putative stomatin/prohibitin-family membrane protease subunit YbbK - none -
fig|6666666.229926.peg.585 CDS AEJM01000016.1 76624 77070 1 + 447 Putative activity regulator of membrane protease YbbK - none -
fig|6666666.229926.peg.586 CDS AEJM01000016.1 77079 77690 3 + 612 NAD(P)H oxidoreductase YRKL (EC 1.6.99.-) @ Putative NADPH-quinone reductase (modulator of drug activity B) @ Flavodoxin 2 Flavodoxin;
Flavodoxin
fig|6666666.229926.peg.587 CDS AEJM01000016.1 77690 78253 2 + 564 Putative oxidoreductase component of anaerobic dehydrogenases; Functional role page for Chaperone protein TorD - none -
fig|6666666.229926.peg.588 CDS AEJM01000016.1 79246 78311 -1 - 936 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) KDO2-Lipid A biosynthesis
fig|6666666.229926.peg.589 CDS AEJM01000016.1 79361 80791 2 + 1431 ADP-heptose synthase (EC 2.7.-.-) / D-glycero-beta-D-manno-heptose 7-phosphate kinase LOS core oligosaccharide biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.229926.peg.590 CDS AEJM01000016.1 81215 80835 -2 - 381 Cysteine desulfurase CsdA-CsdE, sulfur acceptor protein CsdE - none -
fig|6666666.229926.peg.591 CDS AEJM01000016.1 82411 81212 -1 - 1200 Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA Alanine biosynthesis;
mnm5U34 biosynthesis bacteria
fig|6666666.229926.peg.592 CDS AEJM01000016.1 82917 82417 -3 - 501 Micrococcal nuclease (thermonuclease) homologs - none -
fig|6666666.229926.peg.593 CDS AEJM01000016.1 83387 83746 2 + 360 Antiholin-like protein LrgA Murein hydrolase regulation and cell death
fig|6666666.229926.peg.594 CDS AEJM01000016.1 83746 84438 1 + 693 LrgA-associated membrane protein LrgB Murein hydrolase regulation and cell death
fig|6666666.229926.peg.595 CDS AEJM01000016.1 84440 85792 2 + 1353 Deoxyguanosinetriphosphate triphosphohydrolase (EC 3.1.5.1) - none -
fig|6666666.229926.peg.596 CDS AEJM01000016.1 86122 85829 -1 - 294 FIG045511: hypothetical antitoxin (to FIG022160: hypothetical toxin) - none -
fig|6666666.229926.peg.597 CDS AEJM01000016.1 86426 86124 -2 - 303 FIG022160: hypothetical toxin - none -
fig|6666666.229926.peg.598 CDS AEJM01000016.1 86579 88480 2 + 1902 ABC transporter ATP-binding protein - none -
fig|6666666.229926.peg.599 CDS AEJM01000016.1 89060 88902 -2 - 159 hypothetical protein - none -
fig|6666666.229926.peg.600 CDS AEJM01000016.1 89051 90031 2 + 981 Lipid A export ATP-binding/permease protein MsbA (EC 3.6.3.25) KDO2-Lipid A biosynthesis;
KDO2-Lipid A biosynthesis cluster 2
fig|6666666.229926.peg.601 CDS AEJM01000016.1 90376 90645 1 + 270 Putative sugar phosphotransferase component II B - none -
fig|6666666.229926.peg.602 CDS AEJM01000016.1 90669 92024 3 + 1356 FIG00732228: membrane protein - none -
fig|6666666.229926.peg.603 CDS AEJM01000016.1 92035 92859 1 + 825 Transketolase, N-terminal section (EC 2.2.1.1) Pentose phosphate pathway
fig|6666666.229926.peg.604 CDS AEJM01000016.1 92849 93793 2 + 945 Transketolase, C-terminal section (EC 2.2.1.1) Pentose phosphate pathway
fig|6666666.229926.peg.605 CDS AEJM01000016.1 94912 93962 -1 - 951 Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p YrdC-YciO-Sua5 protein family
fig|6666666.229926.peg.606 CDS AEJM01000016.1 94975 95481 1 + 507 FIG001674: hypothetical protein - none -
fig|6666666.229926.peg.607 CDS AEJM01000016.1 97619 95478 -2 - 2142 Putative efflux (PET) family inner membrane protein YccS CBSS-83333.1.peg.946
fig|6666666.229926.peg.608 CDS AEJM01000016.1 98101 97628 -1 - 474 Inner membrane protein YccF CBSS-83333.1.peg.946
fig|6666666.229926.peg.609 CDS AEJM01000016.1 98559 98101 -3 - 459 Methylglyoxal synthase (EC 4.2.3.3) CBSS-83333.1.peg.946;
Methylglyoxal Metabolism
fig|6666666.229926.peg.610 CDS AEJM01000016.1 99302 98622 -2 - 681 UPF0319 protein YccT precursor CBSS-83333.1.peg.946
fig|6666666.229926.peg.611 CDS AEJM01000016.1 99447 99719 3 + 273 Acylphosphate phosphohydrolase (EC 3.6.1.7), putative Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229926.peg.612 CDS AEJM01000016.1 100542 99694 -3 - 849 Manganese ABC transporter, inner membrane permease protein SitD - none -
fig|6666666.229926.peg.613 CDS AEJM01000016.1 101396 100539 -2 - 858 Manganese ABC transporter, inner membrane permease protein SitC - none -
fig|6666666.229926.peg.614 CDS AEJM01000016.1 102286 101396 -1 - 891 Manganese ABC transporter, ATP-binding protein SitB - none -
fig|6666666.229926.peg.615 CDS AEJM01000016.1 103167 102286 -3 - 882 Manganese ABC transporter, periplasmic-binding protein SitA - none -
fig|6666666.229926.peg.616 CDS AEJM01000016.1 103593 103264 -3 - 330 tRNA 2-thiouridine synthesizing protein E (EC 2.8.1.-) CBSS-326442.4.peg.1852;
Lipoic acid synthesis cluster;
Sulfite reduction-associated complex DsrMKJOP and co-clustering genes
fig|6666666.229926.peg.617 CDS AEJM01000016.1 104498 103680 -2 - 819 Putative TEGT family carrier/transport protein CBSS-326442.4.peg.1852
fig|6666666.229926.peg.618 CDS AEJM01000016.1 104796 105074 3 + 279 CRISPR-associated helicase Cas3 CRISPRs
fig|6666666.229926.peg.619 CDS AEJM01000016.1 105168 106592 3 + 1425 helicase (Snf2/Rad54 family) - none -
fig|6666666.229926.peg.620 CDS AEJM01000016.1 106689 108044 3 + 1356 Superfamily II DNA/RNA helicases, SNF2 family - none -
fig|6666666.229926.peg.621 CDS AEJM01000016.1 108440 108568 2 + 129 hypothetical protein - none -
fig|6666666.229926.peg.622 CDS AEJM01000016.1 109810 109986 1 + 177 hypothetical protein - none -
fig|6666666.229926.peg.623 CDS AEJM01000016.1 109995 111167 3 + 1173 hypothetical protein - none -
fig|6666666.229926.peg.624 CDS AEJM01000016.1 111205 112938 1 + 1734 Type III restriction-modification system methylation subunit (EC 2.1.1.72) Restriction-Modification System
fig|6666666.229926.peg.625 CDS AEJM01000016.1 113110 114606 1 + 1497 Type III restriction-modification enzyme helicase subunit - none -
fig|6666666.229926.peg.626 CDS AEJM01000016.1 114613 115821 1 + 1209 Type III restriction-modification enzyme helicase subunit - none -
fig|6666666.229926.peg.627 CDS AEJM01000016.1 115936 116610 1 + 675 CRISPR-associated protein, Cas5d family CRISPRs
fig|6666666.229926.peg.628 CDS AEJM01000016.1 116607 118385 3 + 1779 CRISPR-associated protein, Csd1 family CRISPRs
fig|6666666.229926.peg.629 CDS AEJM01000016.1 118398 119264 3 + 867 CRISPR-associated protein, Csd2 family CRISPRs
fig|6666666.229926.peg.630 CDS AEJM01000016.1 119357 119947 2 + 591 O-methyltransferase - none -
fig|6666666.229926.peg.631 CDS AEJM01000016.1 123407 121134 -2 - 2274 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) Methionine Biosynthesis
fig|6666666.229926.peg.632 CDS AEJM01000016.1 123569 123700 2 + 132 hypothetical protein - none -
fig|6666666.229926.peg.633 CDS AEJM01000016.1 123697 124629 1 + 933 Transcriptional activator MetR LysR-family proteins in Escherichia coli;
LysR-family proteins in Salmonella enterica Typhimurium;
Methionine Biosynthesis
fig|6666666.229926.peg.634 CDS AEJM01000016.1 124634 125362 2 + 729 Branched-chain amino acid transport protein AzlC - none -
fig|6666666.229926.peg.635 CDS AEJM01000016.1 125363 125695 2 + 333 Branched-chain amino acid transport protein azlD - none -
fig|6666666.229926.peg.636 CDS AEJM01000016.1 128554 125762 -1 - 2793 Probable zinc protease pqqL (EC 3.4.99.-) - none -
fig|6666666.229926.peg.637 CDS AEJM01000016.1 130979 128613 -2 - 2367 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229926.peg.638 CDS AEJM01000016.1 131271 132161 3 + 891 Membrane protein LAPB - none -
fig|6666666.229926.peg.639 CDS AEJM01000016.1 132158 132838 2 + 681 Cytidylate kinase (EC 2.7.4.25) pyrimidine conversions
fig|6666666.229926.peg.640 CDS AEJM01000016.1 132936 134582 3 + 1647 SSU ribosomal protein S1p Cell division-ribosomal stress proteins cluster;
Ribosome SSU bacterial
fig|6666666.229926.peg.641 CDS AEJM01000016.1 134644 134931 1 + 288 Integration host factor beta subunit DNA structural proteins, bacterial
fig|6666666.229926.peg.642 CDS AEJM01000016.1 135032 135328 2 + 297 Inner membrane protein yciS - none -
fig|6666666.229926.peg.643 CDS AEJM01000016.1 135382 136506 1 + 1125 Heat shock (predicted periplasmic) protein YciM, precursor Osmotic stress cluster
fig|6666666.229926.peg.644 CDS AEJM01000016.1 136546 137238 1 + 693 Orotidine 5@1-phosphate decarboxylase (EC 4.1.1.23) De Novo Pyrimidine Synthesis;
Riboflavin synthesis cluster
fig|6666666.229926.peg.645 CDS AEJM01000016.1 137244 137561 3 + 318 Translation initiation factor SUI1-related protein Translation initiation factors bacterial
fig|6666666.229926.peg.646 CDS AEJM01000016.1 137947 137597 -1 - 351 FIG00782386: hypothetical protein - none -
fig|6666666.229926.peg.647 CDS AEJM01000016.1 140687 138015 -2 - 2673 DNA gyrase subunit A (EC 5.99.1.3) Cell Division Subsystem including YidCD;
DNA gyrase subunits;
DNA replication cluster 1;
DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.229926.peg.648 CDS AEJM01000016.1 141295 140855 -1 - 441 Ferric uptake regulation protein FUR Bacterial RNA-metabolizing Zn-dependent hydrolases;
Oxidative stress
fig|6666666.229926.peg.649 CDS AEJM01000016.1 141838 141314 -1 - 525 Flavodoxin 1 Flavodoxin
fig|6666666.229926.peg.650 CDS AEJM01000016.1 143055 142255 -3 - 801 Esterase ybfF (EC 3.1.-.-) - none -
fig|6666666.229926.peg.651 CDS AEJM01000016.1 143142 143759 3 + 618 SeqA protein, negative modulator of initiation of replication - none -
fig|6666666.229926.peg.652 CDS AEJM01000016.1 143765 145180 2 + 1416 O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229926.peg.653 CDS AEJM01000016.1 145189 148512 1 + 3324 Potassium efflux system KefA protein / Small-conductance mechanosensitive channel Potassium homeostasis
fig|6666666.229926.peg.654 CDS AEJM01000016.1 148533 149606 3 + 1074 Chorismate synthase (EC 4.2.3.5) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229926.peg.655 CDS AEJM01000016.1 149628 150500 3 + 873 Murein endopeptidase - none -
fig|6666666.229926.peg.656 CDS AEJM01000016.1 150504 151271 3 + 768 Putative membrane protein YfcA - none -
fig|6666666.229926.peg.657 CDS AEJM01000016.1 151594 152550 1 + 957 Lipid A biosynthesis (KDO) 2-(lauroyl)-lipid IVA acyltransferase (EC 2.3.1.-) KDO2-Lipid A biosynthesis
fig|6666666.229926.peg.658 CDS AEJM01000016.1 152572 153183 1 + 612 Adenine phosphoribosyltransferase (EC 2.4.2.7) Purine conversions;
cAMP signaling in bacteria
fig|6666666.229926.peg.659 CDS AEJM01000016.1 153216 155261 3 + 2046 DNA polymerase III subunits gamma and tau (EC 2.7.7.7) DNA processing cluster
fig|6666666.229926.peg.660 CDS AEJM01000016.1 155264 156154 2 + 891 hypothetical protein - none -
fig|6666666.229926.peg.661 CDS AEJM01000016.1 156297 157250 3 + 954 Glycosyltransferase - none -
fig|6666666.229926.peg.662 CDS AEJM01000016.1 157253 158800 2 + 1548 hypothetical protein - none -
fig|6666666.229926.peg.663 CDS AEJM01000016.1 159194 158841 -2 - 354 Putative translation initiation inhibitor, yjgF family - none -
fig|6666666.229926.peg.664 CDS AEJM01000016.1 159335 160012 2 + 678 FIG00904286: hypothetical protein - none -
fig|6666666.229926.peg.665 CDS AEJM01000016.1 160018 160728 1 + 711 hypothetical protein - none -
fig|6666666.229926.peg.666 CDS AEJM01000016.1 161389 160778 -1 - 612 Glutathione S-transferase (EC 2.5.1.18) Glutathione: Non-redox reactions
fig|6666666.229926.peg.667 CDS AEJM01000016.1 163923 161668 -3 - 2256 Topoisomerase IV subunit A (EC 5.99.1.-) DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.229926.peg.668 CDS AEJM01000016.1 164061 164174 3 + 114 hypothetical protein - none -
fig|6666666.229926.peg.669 CDS AEJM01000016.1 166123 164225 -1 - 1899 Topoisomerase IV subunit B (EC 5.99.1.-) DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.229926.peg.670 CDS AEJM01000016.1 166626 167513 3 + 888 putative adhesin/invasin - none -
fig|6666666.229926.peg.671 CDS AEJM01000016.1 169262 167616 -2 - 1647 ABC transporter ATP-binding protein - none -
fig|6666666.229926.peg.672 CDS AEJM01000016.1 169665 170330 3 + 666 putative exported protein - none -
fig|6666666.229926.peg.673 CDS AEJM01000016.1 170346 171380 3 + 1035 putative membrane protein - none -
fig|6666666.229926.peg.674 CDS AEJM01000016.1 171991 174033 1 + 2043 Excinuclease ABC subunit B DNA repair, UvrABC system
fig|6666666.229926.peg.675 CDS AEJM01000016.1 174259 175329 1 + 1071 Outer membrane protein A precursor Osmoregulation
fig|6666666.229926.peg.676 CDS AEJM01000016.1 176912 175530 -2 - 1383 Outer membrane stress sensor protease DegQ, serine protease Periplasmic Stress Response;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229926.peg.677 CDS AEJM01000016.1 177520 177110 -1 - 411 probable membrane protein YPO3565 - none -
fig|6666666.229926.peg.678 CDS AEJM01000016.1 179455 177692 -1 - 1764 FIG00696060: hypothetical protein - none -
fig|6666666.229926.peg.679 CDS AEJM01000016.1 180751 179546 -1 - 1206 Mannose-6-phosphate isomerase (EC 5.3.1.8) Mannose Metabolism
fig|6666666.229926.peg.680 CDS AEJM01000016.1 180927 181265 3 + 339 FIG00904093: hypothetical protein - none -
fig|6666666.229926.peg.681 CDS AEJM01000016.1 181457 182950 2 + 1494 PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69) Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism;
Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229926.peg.682 CDS AEJM01000016.1 183709 183011 -1 - 699 FIG005121: SAM-dependent methyltransferase (EC 2.1.1.-) CBSS-228410.1.peg.134;
CBSS-342610.3.peg.1536;
Glutathione: Non-redox reactions
fig|6666666.229926.peg.683 CDS AEJM01000016.1 183730 184419 1 + 690 Hydroxyacylglutathione hydrolase (EC 3.1.2.6) CBSS-228410.1.peg.134;
CBSS-342610.3.peg.1536;
Glutathione: Non-redox reactions;
Methylglyoxal Metabolism
fig|6666666.229926.peg.684 CDS AEJM01000016.1 184610 185914 2 + 1305 Glutamyl-tRNA reductase (EC 1.2.1.70) A Gammaproteobacteria Cluster Relating to Translation;
Heme and Siroheme Biosynthesis
fig|6666666.229926.peg.685 CDS AEJM01000016.1 185976 187199 3 + 1224 N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family Chitin and N-acetylglucosamine utilization
fig|6666666.229926.peg.686 CDS AEJM01000016.1 188466 187822 -3 - 645 Adenylate kinase (EC 2.7.4.3) Purine conversions
fig|6666666.229926.peg.687 CDS AEJM01000016.1 188602 188477 -1 - 126 hypothetical protein - none -
fig|6666666.229926.peg.688 CDS AEJM01000016.1 189780 188599 -3 - 1182 AmpG permease Recycling of Peptidoglycan Amino Acids
fig|6666666.229926.peg.689 CDS AEJM01000016.1 190242 189901 -3 - 342 [NiFe] hydrogenase nickel incorporation protein HybF NiFe hydrogenase maturation
fig|6666666.229926.peg.690 CDS AEJM01000016.1 191264 190248 -2 - 1017 UDP-glucose 4-epimerase (EC 5.1.3.2) Lactose and Galactose Uptake and Utilization;
Rhamnose containing glycans
fig|6666666.229926.peg.691 CDS AEJM01000016.1 191459 191845 2 + 387 Integral membrane protein - none -
fig|6666666.229926.peg.692 CDS AEJM01000016.1 191975 193090 2 + 1116 Guanine-hypoxanthine permease Purine Utilization
fig|6666666.229926.peg.693 CDS AEJM01000016.1 194543 193197 -2 - 1347 tRNA(Ile)-lysidine synthetase (EC 6.3.4.19) Cell division-ribosomal stress proteins cluster;
Folate biosynthesis cluster;
tRNA modification Bacteria;
tRNA processing;
tRNAmodification position 34
fig|6666666.229926.peg.694 CDS AEJM01000016.1 195432 194575 -3 - 858 Pyridoxal kinase (EC 2.7.1.35) Pyridoxin (Vitamin B6) Biosynthesis
fig|6666666.229926.peg.695 CDS AEJM01000016.1 196448 195495 -2 - 954 Acetyl-coenzyme A carboxyl transferase alpha chain (EC 6.4.1.2) Fatty Acid Biosynthesis FASII
fig|6666666.229926.peg.696 CDS AEJM01000016.1 198230 199180 2 + 951 hypothetical protein - none -
fig|6666666.229926.peg.697 CDS AEJM01000016.1 201132 199573 -3 - 1560 GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2) Purine conversions
fig|6666666.229926.peg.698 CDS AEJM01000016.1 201430 201164 -1 - 267 YafQ toxin protein Toxin-antitoxin replicon stabilization systems
fig|6666666.229926.peg.699 CDS AEJM01000016.1 201714 201442 -3 - 273 DNA-damage-inducible protein J DNA repair, bacterial;
Toxin-antitoxin replicon stabilization systems
fig|6666666.229926.peg.700 CDS AEJM01000016.1 201939 201754 -3 - 186 hypothetical protein - none -
fig|6666666.229926.peg.701 CDS AEJM01000016.1 203321 201969 -2 - 1353 C4-dicarboxylate transporter DcuC (TC 2.A.61.1.1) Citrate Metabolism, Transport, and Regulation
fig|6666666.229926.peg.702 CDS AEJM01000016.1 203747 204202 2 + 456 FIG000325: clustered with transcription termination protein NusA NusA-TFII Cluster;
Transcription factors bacterial
fig|6666666.229926.peg.703 CDS AEJM01000016.1 204226 205722 1 + 1497 Transcription termination protein NusA NusA-TFII Cluster;
Transcription factors bacterial
fig|6666666.229926.peg.704 CDS AEJM01000016.1 205738 208230 1 + 2493 Translation initiation factor 2 CBSS-138119.3.peg.2719;
NusA-TFII Cluster;
Translation initiation factors bacterial;
Universal GTPases
fig|6666666.229926.peg.705 CDS AEJM01000016.1 208763 209149 2 + 387 Ribosome-binding factor A CBSS-138119.3.peg.2719;
NusA-TFII Cluster;
Translation initiation factors bacterial
fig|6666666.229926.peg.706 CDS AEJM01000016.1 209149 210066 1 + 918 tRNA pseudouridine synthase B (EC 4.2.1.70) CBSS-138119.3.peg.2719;
RNA pseudouridine syntheses;
Riboflavin, FMN and FAD metabolism in plants;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229926.peg.707 CDS AEJM01000016.1 210375 210157 -3 - 219 Sucrose-6-phosphate hydrolase (EC 3.2.1.B3) - none -
fig|6666666.229926.peg.708 CDS AEJM01000016.1 210580 210365 -1 - 216 Sucrose-6-phosphate hydrolase (EC 3.2.1.B3) - none -
fig|6666666.229926.peg.709 CDS AEJM01000016.1 210756 210622 -3 - 135 hypothetical protein - none -
fig|6666666.229926.peg.710 CDS AEJM01000016.1 210974 210753 -2 - 222 Fructokinase (EC 2.7.1.4) Fructose utilization;
Mannitol Utilization
fig|6666666.229926.peg.711 CDS AEJM01000016.1 212913 211726 -3 - 1188 Tyrosyl-tRNA synthetase (EC 6.1.1.1) tRNA aminoacylation, Tyr
fig|6666666.229926.peg.712 CDS AEJM01000016.1 213939 213160 -3 - 780 Sugar/maltose fermentation stimulation protein homolog Fermentations: Mixed acid
fig|6666666.229926.peg.713 CDS AEJM01000016.1 214188 215723 3 + 1536 NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2) Phosphate metabolism
fig|6666666.229926.peg.714 CDS AEJM01000016.1 215734 217158 1 + 1425 NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) Phosphate metabolism
fig|6666666.229926.peg.715 CDS AEJM01000016.1 217421 217582 2 + 162 hypothetical protein - none -
fig|6666666.229926.peg.716 CDS AEJM01000016.1 217714 217553 -1 - 162 hypothetical protein - none -
fig|6666666.229926.peg.717 CDS AEJM01000016.1 218182 219036 1 + 855 filamentation induced by cAMP protein Fic-like protein - none -
fig|6666666.229926.peg.718 CDS AEJM01000016.1 219570 220649 3 + 1080 Selenide,water dikinase (EC 2.7.9.3) Selenocysteine metabolism;
tRNA modification Bacteria
fig|6666666.229926.peg.719 CDS AEJM01000016.1 220785 220660 -3 - 126 hypothetical protein - none -
fig|6666666.229926.peg.720 CDS AEJM01000016.1 220884 221954 3 + 1071 Putative ABC transporter of substrate X, ATP-binding subunit ABC transporter of unknown substrate X
fig|6666666.229926.peg.721 CDS AEJM01000016.1 221951 222820 2 + 870 Putative ABC transporter of substrate X, permease subunit I ABC transporter of unknown substrate X
fig|6666666.229926.peg.722 CDS AEJM01000016.1 222817 223668 1 + 852 Putative ABC transporter of substrate X, permease subunit II ABC transporter of unknown substrate X
fig|6666666.229926.peg.723 CDS AEJM01000016.1 223688 224779 2 + 1092 Possible ABC transporter, periplasmic substrate X binding protein precursor ABC transporter of unknown substrate X
fig|6666666.229926.peg.724 CDS AEJM01000016.1 224990 224829 -2 - 162 Autoinducer 2 (AI-2) ABC transport system, periplasmic AI-2 binding protein LsrB Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229926.peg.725 CDS AEJM01000016.1 226821 224992 -3 - 1830 Excinuclease ABC subunit C DNA repair, UvrABC system
fig|6666666.229926.peg.726 CDS AEJM01000016.1 228116 227343 -2 - 774 3-deoxy-manno-octulosonate cytidylyltransferase (EC 2.7.7.38) KDO2-Lipid A biosynthesis;
KDO2-Lipid A biosynthesis cluster 2
fig|6666666.229926.peg.727 CDS AEJM01000016.1 228297 228118 -3 - 180 FIG002473: Protein YcaR in KDO2-Lipid A biosynthesis cluster Broadly distributed proteins not in subsystems;
KDO2-Lipid A biosynthesis cluster 2
fig|6666666.229926.peg.728 CDS AEJM01000016.1 229293 228319 -3 - 975 Tetraacyldisaccharide 4@1-kinase (EC 2.7.1.130) KDO2-Lipid A biosynthesis;
KDO2-Lipid A biosynthesis cluster 2
fig|6666666.229926.peg.729 CDS AEJM01000016.1 231067 229319 -1 - 1749 Lipid A export ATP-binding/permease protein MsbA - none -
fig|6666666.229926.peg.730 CDS AEJM01000016.1 233543 231114 -2 - 2430 DNA internalization-related competence protein ComEC/Rec2 KDO2-Lipid A biosynthesis;
KDO2-Lipid A biosynthesis cluster 2
fig|6666666.229926.peg.731 CDS AEJM01000016.1 233841 234278 3 + 438 C4-type zinc finger protein, DksA/TraR family - none -
fig|6666666.229926.peg.732 CDS AEJM01000016.1 234584 235861 2 + 1278 Poly(A) polymerase (EC 2.7.7.19) Polyadenylation bacterial
fig|6666666.229926.peg.733 CDS AEJM01000016.1 235854 236354 3 + 501 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) Folate Biosynthesis;
Folate biosynthesis cluster
fig|6666666.229926.peg.734 CDS AEJM01000016.1 236778 236416 -3 - 363 hypothetical protein - none -
fig|6666666.229926.peg.735 CDS AEJM01000016.1 236993 236874 -2 - 120 hypothetical protein - none -
fig|6666666.229926.peg.736 CDS AEJM01000016.1 239259 237124 -3 - 2136 Phosphate acetyltransferase (EC 2.3.1.8) Fermentations: Lactate;
Fermentations: Mixed acid;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229926.peg.737 CDS AEJM01000016.1 240529 239327 -1 - 1203 Acetate kinase (EC 2.7.2.1) Fermentations: Lactate;
Fermentations: Mixed acid;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229926.peg.738 CDS AEJM01000016.1 240796 241239 1 + 444 FIG00638298: membrane protein YfbV - none -
fig|6666666.229926.peg.739 CDS AEJM01000016.1 241419 242042 3 + 624 Colicin V production protein - none -
fig|6666666.229926.peg.740 CDS AEJM01000016.1 242035 242154 1 + 120 hypothetical protein - none -
fig|6666666.229926.peg.741 CDS AEJM01000016.1 244103 242112 -2 - 1992 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) Glycogen metabolism;
Glycogen metabolism cluster;
Maltose and Maltodextrin Utilization;
Maltose utilization cluster
fig|6666666.229926.peg.742 CDS AEJM01000016.1 246724 244334 -1 - 2391 Maltodextrin phosphorylase (EC 2.4.1.1) Glycogen metabolism;
Maltose and Maltodextrin Utilization;
Maltose utilization cluster
fig|6666666.229926.peg.743 CDS AEJM01000016.1 246897 249611 3 + 2715 Transcriptional activator of maltose regulon, MalT Maltose and Maltodextrin Utilization;
Maltose utilization cluster
fig|6666666.229926.peg.744 CDS AEJM01000016.1 250646 249771 -2 - 876 Tellurite resistance protein TehB Tellurite resistance: Chromosomal determinants
fig|6666666.229926.peg.745 CDS AEJM01000016.1 251025 253682 3 + 2658 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) 5-FCL-like protein;
Dehydrogenase complexes;
Methionine Degradation;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229926.peg.746 CDS AEJM01000016.1 253771 255360 1 + 1590 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) 5-FCL-like protein;
Dehydrogenase complexes;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229926.peg.747 CDS AEJM01000016.1 255397 256878 1 + 1482 Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4) 5-FCL-like protein;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate;
TCA Cycle;
TCA Cycle
fig|6666666.229926.peg.748 CDS AEJM01000016.1 257784 257230 -3 - 555 FIG002003: Protein YdjA - none -
fig|6666666.229926.peg.749 CDS AEJM01000016.1 257908 259791 1 + 1884 Signal peptide peptidase SppA (EC 3.4.21.-) - none -
fig|6666666.229926.peg.750 CDS AEJM01000016.1 259834 260958 1 + 1125 Chorismate mutase I (EC 5.4.99.5) / Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) Chorismate Synthesis;
Chorismate Synthesis;
Phenylalanine and Tyrosine Branches from Chorismate;
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229926.peg.751 CDS AEJM01000016.1 261035 261658 2 + 624 Hypothetical YciO protein, TsaC/YrdC paralog YrdC-YciO-Sua5 protein family
fig|6666666.229926.peg.752 CDS AEJM01000016.1 261713 262681 2 + 969 Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70) RNA pseudouridine syntheses
fig|6666666.229926.peg.753 CDS AEJM01000016.1 262712 263683 2 + 972 Cys regulon transcriptional activator CysB Cysteine Biosynthesis;
LysR-family proteins in Escherichia coli
fig|6666666.229926.peg.754 CDS AEJM01000016.1 263767 264594 1 + 828 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229926.peg.755 CDS AEJM01000016.1 265028 264708 -2 - 321 putative cytoplasmic protein - none -
fig|6666666.229926.peg.756 CDS AEJM01000016.1 265212 265030 -3 - 183 hypothetical protein - none -
fig|6666666.229926.peg.757 CDS AEJM01000016.1 266320 265322 -1 - 999 Purine nucleotide synthesis repressor Purine nucleotide synthesis regulator
fig|6666666.229926.peg.758 CDS AEJM01000016.1 267649 266624 -1 - 1026 Homoserine O-acetyltransferase (EC 2.3.1.31) Methionine Biosynthesis
fig|6666666.229926.peg.759 CDS AEJM01000016.1 267919 268632 1 + 714 SanA protein - none -
fig|6666666.229926.peg.760 CDS AEJM01000016.1 269602 268616 -1 - 987 Fructose repressor FruR, LacI family Fructose utilization
fig|6666666.229926.peg.761 CDS AEJM01000016.1 270429 270277 -3 - 153 hypothetical protein - none -
fig|6666666.229926.peg.762 CDS AEJM01000016.1 270796 271047 1 + 252 FIG00699498: hypothetical protein - none -
fig|6666666.229926.peg.763 CDS AEJM01000016.1 271216 271097 -1 - 120 hypothetical protein - none -
fig|6666666.229926.peg.764 CDS AEJM01000016.1 272928 272446 -3 - 483 Thiol:disulfide oxidoreductase associated with MetSO reductase Peptide methionine sulfoxide reductase
fig|6666666.229926.peg.765 CDS AEJM01000016.1 273585 272944 -3 - 642 Cytochrome c-type biogenesis protein CcdA homolog, associated with MetSO reductase Peptide methionine sulfoxide reductase
fig|6666666.229926.peg.766 CDS AEJM01000016.1 274659 273589 -3 - 1071 Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11) / Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) Cluster Ytf and putative sugar transporter;
Peptide methionine sulfoxide reductase;
Peptide methionine sulfoxide reductase;
Putative sugar ABC transporter (ytf cluster)
fig|6666666.229926.peg.767 CDS AEJM01000016.1 274876 275568 1 + 693 Carbonic anhydrase (EC 4.2.1.1) - none -
fig|6666666.229926.peg.768 CDS AEJM01000016.1 276290 275703 -2 - 588 21 kDa hemolysin precursor CBSS-160492.1.peg.550
fig|6666666.229926.peg.769 CDS AEJM01000016.1 276939 276355 -3 - 585 Phosphoheptose isomerase (EC 5.3.1.-) CBSS-160492.1.peg.550;
LOS core oligosaccharide biosynthesis
fig|6666666.229926.peg.770 CDS AEJM01000016.1 277310 276951 -2 - 360 Predicted endonuclease distantly related to archaeal Holliday junction resolvase CBSS-160492.1.peg.550
fig|6666666.229926.peg.771 CDS AEJM01000016.1 279038 277320 -2 - 1719 LppC putative lipoprotein CBSS-160492.1.peg.550
fig|6666666.229926.peg.772 CDS AEJM01000016.1 279115 279963 1 + 849 rRNA small subunit methyltransferase I 16S rRNA modification within P site of ribosome;
CBSS-160492.1.peg.550;
Heat shock dnaK gene cluster extended
fig|6666666.229926.peg.773 CDS AEJM01000016.1 280233 281822 3 + 1590 Glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Respiratory dehydrogenases 1
fig|6666666.229926.peg.774 CDS AEJM01000016.1 282008 283345 2 + 1338 NADH dehydrogenase (EC 1.6.99.3) Respiratory dehydrogenases 1;
Riboflavin synthesis cluster
fig|6666666.229926.peg.775 CDS AEJM01000016.1 284027 283437 -2 - 591 FMN-dependent NADH-azoreductase - none -
fig|6666666.229926.peg.776 CDS AEJM01000016.1 284219 285277 2 + 1059 Possible protease sohB (EC 3.4.21.-) - none -
fig|6666666.229926.peg.777 CDS AEJM01000016.1 285468 286292 3 + 825 Outer membrane protein A precursor Osmoregulation
fig|6666666.229926.peg.778 CDS AEJM01000016.1 287233 286358 -1 - 876 Ribulosamine/erythrulosamine 3-kinase potentially involved in protein deglycation Protein deglycation
fig|6666666.229926.peg.779 CDS AEJM01000016.1 287473 289404 1 + 1932 Threonyl-tRNA synthetase (EC 6.1.1.3) tRNA aminoacylation, Thr
fig|6666666.229926.peg.780 CDS AEJM01000016.1 290323 289544 -1 - 780 Ferredoxin--NADP(+) reductase (EC 1.18.1.2) Biogenesis of cytochrome c oxidases
fig|6666666.229926.peg.781 CDS AEJM01000016.1 290699 291178 2 + 480 Translation initiation factor 3 Translation initiation factors bacterial
fig|6666666.229926.peg.782 CDS AEJM01000016.1 291322 291179 -1 - 144 hypothetical protein - none -
fig|6666666.229926.peg.783 CDS AEJM01000016.1 291744 292007 3 + 264 LSU ribosomal protein L20p Ribosome LSU bacterial
fig|6666666.229926.peg.784 CDS AEJM01000016.1 292891 292772 -1 - 120 hypothetical protein - none -
fig|6666666.229926.peg.785 CDS AEJM01000016.1 292982 293935 2 + 954 Tagatose 1,6-bisphosphate aldolase (EC 4.1.2.40) - none -
fig|6666666.229926.peg.786 CDS AEJM01000016.1 293949 295241 3 + 1293 Tagatose-6-phosphate kinase GatZ (EC 2.7.1.144) D-Tagatose and Galactitol Utilization
fig|6666666.229926.peg.787 CDS AEJM01000016.1 295219 295668 1 + 450 PTS system, galactitol-specific IIA component (EC 2.7.1.69) D-Tagatose and Galactitol Utilization
fig|6666666.229926.peg.788 CDS AEJM01000016.1 295687 295971 1 + 285 PTS system, galactitol-specific IIB component (EC 2.7.1.69) D-Tagatose and Galactitol Utilization
fig|6666666.229926.peg.789 CDS AEJM01000016.1 295977 296996 3 + 1020 PTS system, galactitol-specific IIC component (EC 2.7.1.69) D-Tagatose and Galactitol Utilization
fig|6666666.229926.peg.790 CDS AEJM01000016.1 296987 297322 2 + 336 PTS system, galactitol-specific IIC component (EC 2.7.1.69) D-Tagatose and Galactitol Utilization
fig|6666666.229926.peg.791 CDS AEJM01000016.1 297345 298388 3 + 1044 Galactitol-1-phosphate 5-dehydrogenase (EC 1.1.1.251) D-Tagatose and Galactitol Utilization
fig|6666666.229926.peg.792 CDS AEJM01000016.1 298455 299213 3 + 759 Galactitol utilization operon repressor D-Tagatose and Galactitol Utilization
fig|6666666.229926.peg.793 CDS AEJM01000016.1 301190 299337 -2 - 1854 1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis;
Pyridoxin (Vitamin B6) Biosynthesis;
Thiamin biosynthesis
fig|6666666.229926.peg.794 CDS AEJM01000016.1 302166 301276 -3 - 891 Octaprenyl diphosphate synthase (EC 2.5.1.90) / Dimethylallyltransferase (EC 2.5.1.1) / (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10) / Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29) Isoprenoid Biosynthesis;
Isoprenoid Biosynthesis;
Isoprenoid Biosynthesis: Interconversions;
Isoprenoinds for Quinones;
Isoprenoinds for Quinones;
Isoprenoinds for Quinones;
Polyprenyl Diphosphate Biosynthesis;
Polyprenyl Diphosphate Biosynthesis
fig|6666666.229926.peg.795 CDS AEJM01000016.1 302422 302177 -1 - 246 Exodeoxyribonuclease VII small subunit (EC 3.1.11.6) DNA repair, bacterial;
Purine salvage cluster
fig|6666666.229926.peg.796 CDS AEJM01000016.1 302647 303543 1 + 897 Acetyl-coenzyme A carboxyl transferase beta chain (EC 6.4.1.2) Fatty Acid Biosynthesis FASII
fig|6666666.229926.peg.797 CDS AEJM01000016.1 303566 304912 2 + 1347 Dihydrofolate synthase (EC 6.3.2.12) @ Folylpolyglutamate synthase (EC 6.3.2.17) Folate Biosynthesis;
Folate Biosynthesis
fig|6666666.229926.peg.798 CDS AEJM01000016.1 306442 304976 -1 - 1467 Mobile element protein - none -
fig|6666666.229926.peg.799 CDS AEJM01000016.1 306664 306452 -1 - 213 Ner-like regulatory protein - none -
fig|6666666.229926.peg.800 CDS AEJM01000016.1 307177 307296 1 + 120 hypothetical protein - none -
fig|6666666.229926.peg.801 CDS AEJM01000016.1 307553 307684 2 + 132 hypothetical protein - none -
fig|6666666.229926.peg.802 CDS AEJM01000016.1 307939 307733 -1 - 207 Hypothetical, related to broad specificity phosphatases COG0406 CBSS-196164.1.peg.461
fig|6666666.229926.peg.803 CDS AEJM01000016.1 309459 308002 -3 - 1458 Cardiolipin synthetase (EC 2.7.8.-) Cardiolipin synthesis;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229926.peg.804 CDS AEJM01000016.1 310381 309473 -1 - 909 Putative surface protein - none -
fig|6666666.229926.peg.805 CDS AEJM01000016.1 310512 311189 3 + 678 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses;
Ribosome biogenesis bacterial;
tRNA modification Bacteria
fig|6666666.229926.peg.806 CDS AEJM01000016.1 311234 312097 2 + 864 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229926.peg.807 CDS AEJM01000016.1 312180 312503 3 + 324 Alkylphosphonate utilization operon protein PhnA - none -
fig|6666666.229926.peg.808 CDS AEJM01000016.1 312707 314161 2 + 1455 Esterase/lipase - none -
fig|6666666.229926.peg.809 CDS AEJM01000016.1 315787 314414 -1 - 1374 RND efflux system, outer membrane lipoprotein CmeC Multidrug Resistance Efflux Pumps
fig|6666666.229926.peg.810 CDS AEJM01000016.1 317797 315863 -1 - 1935 Macrolide export ATP-binding/permease protein MacB (EC 3.6.3.-) Multidrug Resistance Efflux Pumps
fig|6666666.229926.peg.811 CDS AEJM01000016.1 318995 317817 -2 - 1179 Macrolide-specific efflux protein MacA Multidrug Resistance Efflux Pumps
fig|6666666.229926.peg.812 CDS AEJM01000016.1 319196 320887 2 + 1692 Glutaminyl-tRNA synthetase (EC 6.1.1.18) tRNA aminoacylation, Glu and Gln
fig|6666666.229926.peg.813 CDS AEJM01000016.1 321142 321285 1 + 144 HigB toxin protein Toxin-antitoxin replicon stabilization systems
fig|6666666.229926.peg.814 CDS AEJM01000016.1 321295 321591 1 + 297 HigA protein (antitoxin to HigB) Toxin-antitoxin replicon stabilization systems
fig|6666666.229926.peg.815 CDS AEJM01000016.1 321659 322093 2 + 435 YcgN (Fragment) CBSS-243277.1.peg.4359
fig|6666666.229926.peg.816 CDS AEJM01000016.1 322193 322741 2 + 549 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) Glycogen metabolism;
Glycogen metabolism cluster;
Maltose and Maltodextrin Utilization;
Maltose utilization cluster
fig|6666666.229926.peg.817 CDS AEJM01000016.1 322754 324949 2 + 2196 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) Glycogen metabolism;
Glycogen metabolism cluster
fig|6666666.229926.peg.818 CDS AEJM01000016.1 324946 326955 1 + 2010 Glycogen debranching enzyme (EC 3.2.1.-) Glycogen metabolism;
Glycogen metabolism cluster
fig|6666666.229926.peg.819 CDS AEJM01000016.1 326982 328292 3 + 1311 Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27) Glycogen metabolism;
Glycogen metabolism cluster
fig|6666666.229926.peg.820 CDS AEJM01000016.1 328499 329938 2 + 1440 Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21) Glycogen metabolism;
Glycogen metabolism cluster
fig|6666666.229926.peg.821 CDS AEJM01000016.1 330062 332527 2 + 2466 Glycogen phosphorylase (EC 2.4.1.1) Glycogen metabolism;
Glycogen metabolism cluster;
Maltose and Maltodextrin Utilization
fig|6666666.229926.peg.822 CDS AEJM01000016.1 332691 332542 -3 - 150 hypothetical protein - none -
fig|6666666.229926.peg.823 CDS AEJM01000016.1 333250 332645 -1 - 606 DedA protein DedA family of inner membrane proteins;
Uptake of selenate and selenite
fig|6666666.229926.peg.824 CDS AEJM01000016.1 333464 333751 2 + 288 LSU ribosomal protein L25p Ribosome LSU bacterial;
Transcription repair cluster
fig|6666666.229926.peg.825 CDS AEJM01000016.1 333906 333790 -3 - 117 hypothetical protein - none -
fig|6666666.229926.peg.826 CDS AEJM01000016.1 333899 334507 2 + 609 lipoprotein HlpB - none -
fig|6666666.229926.peg.827 CDS AEJM01000016.1 334654 335535 1 + 882 Murein-DD-endopeptidase (EC 3.4.99.-) Peptidoglycan Biosynthesis
fig|6666666.229926.peg.828 CDS AEJM01000016.1 335713 337041 1 + 1329 Chromosome partition protein MukF DNA structural proteins, bacterial;
MukBEF Chromosome Condensation
fig|6666666.229926.peg.829 CDS AEJM01000016.1 337145 340606 2 + 3462 Putative 2-acylglycerophosphoethanolamine acyltransferase / acyl-acyl carrier protein synthetase (EC 6.2.1.20) - none -
fig|6666666.229926.peg.830 CDS AEJM01000016.1 340627 341367 1 + 741 Chromosome partition protein MukE DNA structural proteins, bacterial;
MukBEF Chromosome Condensation
fig|6666666.229926.peg.831 CDS AEJM01000016.1 341367 345857 3 + 4491 Chromosome partition protein MukB DNA structural proteins, bacterial;
MukBEF Chromosome Condensation
fig|6666666.229926.peg.832 CDS AEJM01000016.1 345934 346887 1 + 954 Integral membrane protein - none -
fig|6666666.229926.peg.833 CDS AEJM01000016.1 346899 348326 3 + 1428 Exodeoxyribonuclease I (EC 3.1.11.1) DNA Repair Base Excision
fig|6666666.229926.peg.834 CDS AEJM01000016.1 349221 349706 3 + 486 Ferritin-like protein 2 - none -
fig|6666666.229926.peg.835 CDS AEJM01000016.1 349724 350221 2 + 498 Ferritin-like protein 2 - none -
fig|6666666.229926.peg.836 CDS AEJM01000016.1 350450 350283 -2 - 168 hypothetical protein - none -
fig|6666666.229926.peg.837 CDS AEJM01000016.1 350558 351331 2 + 774 Fumarate and nitrate reduction regulatory protein Oxidative stress
fig|6666666.229926.peg.838 CDS AEJM01000016.1 351450 352382 3 + 933 Universal stress protein E Universal stress protein family
fig|6666666.229926.peg.839 CDS AEJM01000016.1 352510 353346 1 + 837 ABC-type Co2+ transport system, periplasmic component - none -
fig|6666666.229926.peg.840 CDS AEJM01000016.1 356038 353432 -1 - 2607 DNA topoisomerase I (EC 5.99.1.2) CBSS-272943.3.peg.1367;
Conserved gene cluster associated with Met-tRNA formyltransferase;
DNA topoisomerases, Type I, ATP-independent
fig|6666666.229926.peg.841 CDS AEJM01000016.1 356137 357033 1 + 897 Transcriptional regulator - none -
fig|6666666.229926.peg.842 CDS AEJM01000016.1 357925 357077 -1 - 849 COG0613, Predicted metal-dependent phosphoesterases (PHP family) YrdC-YciO-Sua5 protein family;
tRNA modification Bacteria
fig|6666666.229926.peg.843 CDS AEJM01000016.1 358945 357926 -1 - 1020 Dihydroorotate dehydrogenase (EC 1.3.3.1) De Novo Pyrimidine Synthesis
fig|6666666.229926.peg.844 CDS AEJM01000016.1 361627 359018 -1 - 2610 Membrane alanine aminopeptidase N (EC 3.4.11.2) Aminopeptidases (EC 3.4.11.-)
fig|6666666.229926.peg.845 CDS AEJM01000016.1 361843 361718 -1 - 126 hypothetical protein - none -
fig|6666666.229926.peg.846 CDS AEJM01000016.1 362050 363240 1 + 1191 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229926.peg.847 CDS AEJM01000016.1 363237 363362 3 + 126 hypothetical protein - none -
fig|6666666.229926.peg.848 CDS AEJM01000016.1 363425 363685 2 + 261 hypothetical protein - none -
fig|6666666.229926.peg.849 CDS AEJM01000016.1 366014 363831 -2 - 2184 hypothetical protein - none -
fig|6666666.229926.peg.850 CDS AEJM01000016.1 366401 366024 -2 - 378 hypothetical protein - none -
fig|6666666.229926.peg.851 CDS AEJM01000016.1 366975 366529 -3 - 447 hypothetical protein - none -
fig|6666666.229926.peg.852 CDS AEJM01000016.1 367796 366981 -2 - 816 hypothetical protein - none -
fig|6666666.229926.peg.853 CDS AEJM01000016.1 368495 367935 -2 - 561 Transcriptional regulator, TetR family - none -
fig|6666666.229926.peg.854 CDS AEJM01000016.1 368643 368927 3 + 285 HlyD family secretion protein - none -
fig|6666666.229926.peg.855 CDS AEJM01000016.1 368981 369610 2 + 630 HlyD family secretion protein - none -
fig|6666666.229926.peg.856 CDS AEJM01000016.1 369613 372342 1 + 2730 ABC-type multidrug transport system, permease component - none -
fig|6666666.229926.peg.857 CDS AEJM01000016.1 372344 373471 2 + 1128 ABC-type multidrug transport system, permease component - none -
fig|6666666.229926.peg.858 CDS AEJM01000016.1 373491 374906 3 + 1416 Outer membrane component of tripartite multidrug resistance system Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria
fig|6666666.229926.peg.859 CDS AEJM01000016.1 375080 376066 2 + 987 Vitamin B12 ABC transporter, permease component BtuC - none -
fig|6666666.229926.peg.860 CDS AEJM01000016.1 376066 376866 1 + 801 Glutathione synthetase (EC 6.3.2.3) Cluster containing Glutathione synthetase;
Glutathione: Biosynthesis and gamma-glutamyl cycle;
Heat shock dnaK gene cluster extended
fig|6666666.229926.peg.861 CDS AEJM01000016.1 376879 377913 1 + 1035 FIG00362752: hypothetical protein - none -
fig|6666666.229926.peg.862 CDS AEJM01000016.1 377996 378205 2 + 210 Molybdate-binding domain of ModE Molybdenum cofactor biosynthesis
fig|6666666.229926.peg.863 CDS AEJM01000016.1 380724 378337 -3 - 2388 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins Ton and Tol transport systems
fig|6666666.229926.peg.864 CDS AEJM01000016.1 381566 380817 -2 - 750 ABC transporter ATP-binding protein - none -
fig|6666666.229926.peg.865 CDS AEJM01000016.1 382354 381563 -1 - 792 Vitamin B12 ABC transporter, permease component BtuC - none -
fig|6666666.229926.peg.866 CDS AEJM01000016.1 382575 382360 -3 - 216 Vitamin B12 ABC transporter, permease component BtuC - none -
fig|6666666.229926.peg.867 CDS AEJM01000016.1 383579 382575 -2 - 1005 ABC transporter, solute-binding protein - none -
fig|6666666.229926.peg.868 CDS AEJM01000016.1 383789 384286 2 + 498 FIG00697418: hypothetical protein - none -
fig|6666666.229926.peg.869 CDS AEJM01000016.1 384288 385001 3 + 714 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins Ton and Tol transport systems
fig|6666666.229926.peg.870 CDS AEJM01000016.1 384967 385743 1 + 777 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins Ton and Tol transport systems
fig|6666666.229926.peg.871 CDS AEJM01000016.1 385756 386301 1 + 546 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins Ton and Tol transport systems
fig|6666666.229926.peg.872 CDS AEJM01000016.1 386806 386390 -1 - 417 putative membrane protein - none -
fig|6666666.229926.peg.873 CDS AEJM01000016.1 386947 387912 1 + 966 tRNA(Cytosine32)-2-thiocytidine synthetase CBSS-326442.4.peg.1852;
tRNA modification Bacteria
fig|6666666.229926.peg.874 CDS AEJM01000016.1 388495 388007 -1 - 489 Probable lipoprotein nlpC precursor - none -
fig|6666666.229926.peg.875 CDS AEJM01000016.1 388844 388548 -2 - 297 Integration host factor alpha subunit DNA structural proteins, bacterial
fig|6666666.229926.peg.876 CDS AEJM01000016.1 391238 388848 -2 - 2391 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) tRNA aminoacylation, Phe
fig|6666666.229926.peg.877 CDS AEJM01000016.1 392247 391258 -3 - 990 Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20) tRNA aminoacylation, Phe
fig|6666666.229926.peg.878 CDS AEJM01000016.1 393383 392508 -2 - 876 Probable protease htpX homolog - none -
fig|6666666.229926.peg.879 CDS AEJM01000016.1 393420 393572 3 + 153 hypothetical protein - none -
fig|6666666.229926.peg.880 CDS AEJM01000016.1 394385 395320 2 + 936 Arabinose 5-phosphate isomerase (EC 5.3.1.13) KDO2-Lipid A biosynthesis
fig|6666666.229926.peg.881 CDS AEJM01000016.1 395320 395874 1 + 555 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC 3.1.3.45) KDO2-Lipid A biosynthesis
fig|6666666.229926.peg.882 CDS AEJM01000016.1 395916 396038 3 + 123 hypothetical protein - none -
fig|6666666.229926.peg.883 CDS AEJM01000016.1 396122 397669 2 + 1548 Anthranilate synthase, aminase component (EC 4.1.3.27) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229926.peg.884 CDS AEJM01000016.1 397680 398267 3 + 588 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229926.peg.885 CDS AEJM01000016.1 398384 398776 2 + 393 putative - none -
fig|6666666.229926.peg.886 CDS AEJM01000016.1 398788 399297 1 + 510 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) Auxin biosynthesis;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229926.peg.887 CDS AEJM01000016.1 399273 399785 3 + 513 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) Auxin biosynthesis;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229926.peg.888 CDS AEJM01000016.1 399881 400159 2 + 279 HigB toxin protein Toxin-antitoxin replicon stabilization systems
fig|6666666.229926.peg.889 CDS AEJM01000016.1 400169 400447 2 + 279 HigA protein (antitoxin to HigB) Toxin-antitoxin replicon stabilization systems
fig|6666666.229926.peg.890 CDS AEJM01000016.1 400456 401325 1 + 870 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24) Auxin biosynthesis;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis;
Tryptophan synthesis
fig|6666666.229926.peg.891 CDS AEJM01000016.1 401386 401886 1 + 501 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24) Auxin biosynthesis;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis;
Tryptophan synthesis
fig|6666666.229926.peg.892 CDS AEJM01000016.1 402176 403324 2 + 1149 Uptake hydrogenase small subunit precursor (EC 1.12.99.6) Hydrogenases
fig|6666666.229926.peg.893 CDS AEJM01000016.1 403326 404366 3 + 1041 Fe-S-cluster-containing hydrogenase components 1 Anaerobic respiratory reductases;
Hydrogenases
fig|6666666.229926.peg.894 CDS AEJM01000016.1 404359 405585 1 + 1227 Ni/Fe-hydrogenase 2 B-type cytochrome subunit Hydrogenases
fig|6666666.229926.peg.895 CDS AEJM01000016.1 405585 407294 3 + 1710 Uptake hydrogenase large subunit (EC 1.12.99.6) Hydrogenases
fig|6666666.229926.peg.896 CDS AEJM01000016.1 407294 407773 2 + 480 Hydrogenase maturation protease (EC 3.4.24.-) - none -
fig|6666666.229926.peg.897 CDS AEJM01000016.1 407976 408485 3 + 510 Hydrogenase-2 operon protein hybE - none -
fig|6666666.229926.peg.898 CDS AEJM01000016.1 408515 408790 2 + 276 [NiFe] hydrogenase metallocenter assembly protein HybG G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229926.peg.899 CDS AEJM01000016.1 409454 409263 -2 - 192 hypothetical protein - none -
fig|6666666.229926.peg.900 CDS AEJM01000016.1 409662 409781 3 + 120 hypothetical protein - none -
fig|6666666.229926.peg.901 CDS AEJM01000016.1 409815 410081 3 + 267 Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3) Na+ translocating decarboxylases and related biotin-dependent enzymes;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229926.peg.902 CDS AEJM01000016.1 410096 411892 2 + 1797 Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3) Na+ translocating decarboxylases and related biotin-dependent enzymes;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229926.peg.903 CDS AEJM01000016.1 411903 413207 3 + 1305 Oxaloacetate decarboxylase beta chain (EC 4.1.1.3) Na+ translocating decarboxylases and related biotin-dependent enzymes;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229926.peg.904 CDS AEJM01000016.1 415530 413899 -3 - 1632 Outer membrane receptor for lactoferrin or transferrin, TonB-dependent protein A - none -
fig|6666666.229926.peg.905 CDS AEJM01000016.1 416267 415683 -2 - 585 Outer membrane receptor for lactoferrin or transferrin, TonB-dependent protein A - none -
fig|6666666.229926.peg.906 CDS AEJM01000016.1 416722 416516 -1 - 207 hypothetical protein - none -
fig|6666666.229926.peg.907 CDS AEJM01000016.1 416673 417440 3 + 768 3-hydroxypropionate dehydrogenase (EC 1.1.1.298) - none -
fig|6666666.229926.peg.908 CDS AEJM01000016.1 417450 418649 3 + 1200 Tryptophan synthase beta chain (EC 4.2.1.20) Auxin biosynthesis;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229926.peg.909 CDS AEJM01000016.1 418646 419452 2 + 807 Tryptophan synthase alpha chain (EC 4.2.1.20) Auxin biosynthesis;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229926.peg.910 CDS AEJM01000016.1 419729 421414 2 + 1686 Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) Ribonucleotide reduction
fig|6666666.229926.peg.911 CDS AEJM01000016.1 421656 422645 3 + 990 Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) Ribonucleotide reduction
fig|6666666.229926.peg.912 CDS AEJM01000016.1 422930 424336 2 + 1407 Pyruvate kinase (EC 2.7.1.40) Entner-Doudoroff Pathway;
Glycerate metabolism;
Glycolysis and Gluconeogenesis;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229926.peg.913 CDS AEJM01000016.1 424329 424451 3 + 123 hypothetical protein - none -
fig|6666666.229926.peg.914 CDS AEJM01000016.1 424746 424444 -3 - 303 Autoinducer 2 (AI-2) modifying protein LsrG Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229926.peg.915 CDS AEJM01000016.1 425657 424779 -2 - 879 Autoinducer 2 (AI-2) aldolase LsrF (EC 4.2.1.-) Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229926.peg.916 CDS AEJM01000016.1 426697 425681 -1 - 1017 Autoinducer 2 (AI-2) ABC transport system, periplasmic AI-2 binding protein LsrB Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229926.peg.917 CDS AEJM01000016.1 427726 426722 -1 - 1005 Autoinducer 2 (AI-2) ABC transport system, membrane channel protein LsrD Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229926.peg.918 CDS AEJM01000016.1 428771 427740 -2 - 1032 Autoinducer 2 (AI-2) ABC transport system, membrane channel protein LsrC Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229926.peg.919 CDS AEJM01000016.1 430298 428781 -2 - 1518 Autoinducer 2 (AI-2) ABC transport system, fused AI2 transporter subunits and ATP-binding component Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229926.peg.920 CDS AEJM01000016.1 430544 431509 2 + 966 LsrR, transcriptional repressor of lsr operon Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229926.peg.921 CDS AEJM01000016.1 431558 433132 2 + 1575 Autoinducer 2 (AI-2) kinase LsrK (EC 2.7.1.-) Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229926.peg.922 CDS AEJM01000016.1 433946 433218 -2 - 729 Dethiobiotin synthetase (EC 6.3.3.3) Biotin biosynthesis Experimental
fig|6666666.229926.peg.923 CDS AEJM01000016.1 435252 434023 -3 - 1230 Mlc, transcriptional repressor of MalT (the transcriptional activator of maltose regulon) and manXYZ operon Maltose and Maltodextrin Utilization
fig|6666666.229926.peg.924 CDS AEJM01000016.1 435448 436851 1 + 1404 Asparaginyl-tRNA synthetase (EC 6.1.1.22) tRNA aminoacylation, Asp and Asn
fig|6666666.229926.peg.925 CDS AEJM01000016.1 437011 436880 -1 - 132 hypothetical protein - none -
fig|6666666.229926.peg.926 CDS AEJM01000016.1 437473 437012 -1 - 462 Stringent starvation protein B Carbon Starvation
fig|6666666.229926.peg.927 CDS AEJM01000016.1 438126 437485 -3 - 642 Stringent starvation protein A Carbon Starvation
fig|6666666.229926.peg.928 CDS AEJM01000016.1 438782 438327 -2 - 456 Molybdenum cofactor biosynthesis protein MoaE Molybdenum cofactor biosynthesis;
ar-104-EC Molybdenum cofactor biosynthesis moaABCDE
fig|6666666.229926.peg.929 CDS AEJM01000016.1 439028 438783 -2 - 246 Molybdenum cofactor biosynthesis protein MoaD Molybdenum cofactor biosynthesis;
ar-104-EC Molybdenum cofactor biosynthesis moaABCDE
fig|6666666.229926.peg.930 CDS AEJM01000016.1 439468 439028 -1 - 441 Molybdenum cofactor biosynthesis protein MoaC Molybdenum cofactor biosynthesis;
ar-104-EC Molybdenum cofactor biosynthesis moaABCDE
fig|6666666.229926.peg.931 CDS AEJM01000016.1 440576 439563 -2 - 1014 Molybdenum cofactor biosynthesis protein MoaA Molybdenum cofactor biosynthesis;
ar-104-EC Molybdenum cofactor biosynthesis moaABCDE
fig|6666666.229926.peg.932 CDS AEJM01000016.1 440936 441904 2 + 969 FIG002813: LPPG:FO 2-phospho-L-lactate transferase like, CofD-like - none -
fig|6666666.229926.peg.933 CDS AEJM01000016.1 442961 441969 -2 - 993 Putative DNA-binding protein in cluster with Type I restriction-modification system Restriction-Modification System
fig|6666666.229926.peg.934 CDS AEJM01000016.1 444708 443251 -3 - 1458 Thiamine biosynthesis protein thiI - none -
fig|6666666.229926.peg.935 CDS AEJM01000016.1 445014 446114 3 + 1101 Cytochrome c-type protein TorY - none -
fig|6666666.229926.peg.936 CDS AEJM01000016.1 446175 448664 3 + 2490 Trimethylamine-N-oxide reductase (EC 1.6.6.9) - none -
fig|6666666.229926.peg.937 CDS AEJM01000016.1 448657 448833 1 + 177 hypothetical protein - none -
fig|6666666.229926.peg.938 CDS AEJM01000016.1 449744 448965 -2 - 780 Protein of unknown function DUF419 - none -
fig|6666666.229926.peg.939 CDS AEJM01000016.1 449746 449916 1 + 171 hypothetical protein - none -
fig|6666666.229926.peg.940 CDS AEJM01000016.1 449970 451427 3 + 1458 2-oxoglutarate/malate translocator - none -
fig|6666666.229926.peg.941 CDS AEJM01000016.1 451562 451816 2 + 255 RelB/StbD replicon stabilization protein (antitoxin to RelE/StbE) Toxin-antitoxin replicon stabilization systems
fig|6666666.229926.peg.942 CDS AEJM01000016.1 451813 452097 1 + 285 StbE replicon stabilization toxin - none -
fig|6666666.229926.peg.943 CDS AEJM01000016.1 452903 452118 -2 - 786 tRNA pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229926.peg.944 CDS AEJM01000016.1 453445 453053 -1 - 393 SSU ribosomal protein S9p (S16e) Ribosome SSU bacterial
fig|6666666.229926.peg.945 CDS AEJM01000016.1 453890 453462 -2 - 429 LSU ribosomal protein L13p (L13Ae) Ribosome LSU bacterial
fig|6666666.229926.peg.946 CDS AEJM01000016.1 454728 454132 -3 - 597 hypothetical protein - none -
fig|6666666.229926.peg.947 CDS AEJM01000016.1 456720 454741 -3 - 1980 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) DNA repair, bacterial RecBCD pathway
fig|6666666.229926.peg.948 CDS AEJM01000016.1 460388 456720 -2 - 3669 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) DNA repair, bacterial RecBCD pathway
fig|6666666.229926.peg.949 CDS AEJM01000016.1 460449 460336 -3 - 114 hypothetical protein - none -
fig|6666666.229926.peg.950 CDS AEJM01000016.1 460814 460458 -2 - 357 DsrE-related protein - none -
fig|6666666.229926.peg.951 CDS AEJM01000016.1 461778 461248 -3 - 531 3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabA form (EC 4.2.1.59) Fatty Acid Biosynthesis FASII
fig|6666666.229926.peg.952 CDS AEJM01000016.1 463675 461921 -1 - 1755 ATP-dependent protease La (EC 3.4.21.53) Type II Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229926.peg.953 CDS AEJM01000016.1 463852 464298 1 + 447 Macrodomain Ter protein YcbG - none -
fig|6666666.229926.peg.954 CDS AEJM01000016.1 464574 464365 -3 - 210 Cold shock protein CspD Cold shock, CspA family of proteins
fig|6666666.229926.peg.955 CDS AEJM01000016.1 464928 464764 -3 - 165 hypothetical protein - none -
fig|6666666.229926.peg.956 CDS AEJM01000016.1 465694 464981 -1 - 714 tRNA pseudouridine synthase C (EC 4.2.1.70) RNA pseudouridine syntheses;
tRNA modification Bacteria
fig|6666666.229926.peg.957 CDS AEJM01000016.1 466005 465691 -3 - 315 Hypothetical protein YqcC (clustered with tRNA pseudouridine synthase C) - none -
fig|6666666.229926.peg.958 CDS AEJM01000016.1 466114 466896 1 + 783 Zn-ribbon-containing, possibly nucleic-acid-binding protein - none -
fig|6666666.229926.peg.959 CDS AEJM01000016.1 466905 467744 3 + 840 NADPH dependent preQ0 reductase (EC 1.7.1.13) - none -
fig|6666666.229926.peg.960 CDS AEJM01000016.1 469046 467796 -2 - 1251 Phosphoglycerate transport system transcriptional regulatory protein PgtA Phosphoglycerate transport system
fig|6666666.229926.peg.961 CDS AEJM01000016.1 471021 469039 -3 - 1983 Phosphoglycerate transport system sensor protein PgtB (EC 2.7.3.-) Phosphoglycerate transport system
fig|6666666.229926.peg.962 CDS AEJM01000016.1 472268 471018 -2 - 1251 Phosphoglycerate transport regulatory protein PgtC Phosphoglycerate transport system
fig|6666666.229926.peg.963 CDS AEJM01000016.1 472642 473640 1 + 999 ABC-type Fe3+ transport system, periplasmic component - none -
fig|6666666.229926.peg.964 CDS AEJM01000016.1 473662 474741 1 + 1080 Thiamin ABC transporter, ATPase component Thiamin biosynthesis
fig|6666666.229926.peg.965 CDS AEJM01000016.1 474744 476438 3 + 1695 Ferric iron ABC transporter, permease protein Iron acquisition in Streptococcus
fig|6666666.229926.peg.966 CDS AEJM01000016.1 476460 477518 3 + 1059 Ferric iron ABC transporter, ATP-binding protein Iron acquisition in Streptococcus
fig|6666666.229926.peg.967 CDS AEJM01000016.1 478182 477646 -3 - 537 Putative transporting ATPase - none -
fig|6666666.229926.peg.968 CDS AEJM01000016.1 480234 478282 -3 - 1953 Cell division protein FtsH (EC 3.4.24.-) Bacterial Cell Division;
Cell division-ribosomal stress proteins cluster;
Folate biosynthesis cluster
fig|6666666.229926.peg.969 CDS AEJM01000016.1 480970 480341 -1 - 630 Heat shock protein FtsJ/RrmJ @ Ribosomal RNA large subunit methyltransferase E (EC 2.1.1.-) RNA methylation
fig|6666666.229926.peg.970 CDS AEJM01000016.1 481974 481105 -3 - 870 Formyltetrahydrofolate deformylase (EC 3.5.1.10) 5-FCL-like protein;
One-carbon metabolism by tetrahydropterines
fig|6666666.229926.peg.971 CDS AEJM01000016.1 482407 482009 -1 - 399 DNA-binding protein H-NS - none -
fig|6666666.229926.peg.972 CDS AEJM01000016.1 482848 484380 1 + 1533 Na+/H+ antiporter - none -
fig|6666666.229926.peg.973 CDS AEJM01000017.1 1176 169 -3 - 1008 Peptide chain release factor 2; programmed frameshift-containing Programmed frameshift;
Programmed frameshift;
Translation termination factors bacterial
fig|6666666.229926.peg.974 CDS AEJM01000017.1 1378 1190 -1 - 189 hypothetical protein - none -
fig|6666666.229926.peg.975 CDS AEJM01000017.1 1437 2120 3 + 684 Thiol:disulfide interchange protein DsbC Periplasmic disulfide interchange
fig|6666666.229926.peg.976 CDS AEJM01000017.1 2133 3854 3 + 1722 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) DNA Repair Base Excision;
DNA repair, bacterial RecFOR pathway
fig|6666666.229926.peg.977 CDS AEJM01000017.1 3887 4534 2 + 648 Thiol-disulfide isomerase and thioredoxins - none -
fig|6666666.229926.peg.978 CDS AEJM01000017.1 4551 5243 3 + 693 5@1-methylthioadenosine nucleosidase (EC 3.2.2.16) @ S-adenosylhomocysteine nucleosidase (EC 3.2.2.9) Adenosyl nucleosidases;
Adenosyl nucleosidases;
Methionine Biosynthesis;
Methionine Degradation;
Polyamine Metabolism
fig|6666666.229926.peg.979 CDS AEJM01000017.1 5426 6121 2 + 696 Additional periplasmic component NikK of nickel ECF transporter Transport of Nickel and Cobalt
fig|6666666.229926.peg.980 CDS AEJM01000017.1 6128 6631 2 + 504 Additional component NikL of nickel ECF transporter Transport of Nickel and Cobalt
fig|6666666.229926.peg.981 CDS AEJM01000017.1 6631 7275 1 + 645 Substrate-specific component NikM of nickel ECF transporter ECF class transporters;
Transport of Nickel and Cobalt
fig|6666666.229926.peg.982 CDS AEJM01000017.1 7281 7946 3 + 666 Transmembrane component NikQ of energizing module of nickel ECF transporter ECF class transporters;
Transport of Nickel and Cobalt
fig|6666666.229926.peg.983 CDS AEJM01000017.1 7943 8566 2 + 624 ATPase component NikO of energizing module of nickel ECF transporter ECF class transporters;
Transport of Nickel and Cobalt
fig|6666666.229926.peg.984 CDS AEJM01000017.1 8646 9458 3 + 813 [NiFe] hydrogenase nickel incorporation-associated protein HypB G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229926.peg.985 CDS AEJM01000017.1 9485 10597 2 + 1113 [NiFe] hydrogenase metallocenter assembly protein HypD G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229926.peg.986 CDS AEJM01000017.1 10597 11610 1 + 1014 [NiFe] hydrogenase metallocenter assembly protein HypE G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229926.peg.987 CDS AEJM01000017.1 12151 11939 -1 - 213 Shikimate 5-dehydrogenase I gamma (EC 1.1.1.25) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229926.peg.988 CDS AEJM01000017.1 12750 12148 -3 - 603 Shikimate 5-dehydrogenase I gamma (EC 1.1.1.25) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229926.peg.989 CDS AEJM01000017.1 13785 12901 -3 - 885 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) 5-FCL-like protein;
Methionine Biosynthesis;
One-carbon metabolism by tetrahydropterines
fig|6666666.229926.peg.990 CDS AEJM01000017.1 15027 13960 -3 - 1068 FIG000906: Predicted Permease CBSS-208964.1.peg.3826
fig|6666666.229926.peg.991 CDS AEJM01000017.1 16150 15032 -1 - 1119 FIG000988: Predicted permease CBSS-208964.1.peg.3826
fig|6666666.229926.peg.992 CDS AEJM01000017.1 16287 17777 3 + 1491 Cytosol aminopeptidase PepA (EC 3.4.11.1) Aminopeptidases (EC 3.4.11.-);
CBSS-208964.1.peg.3826;
Dehydrogenase complexes
fig|6666666.229926.peg.993 CDS AEJM01000017.1 18983 17922 -2 - 1062 Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229926.peg.994 CDS AEJM01000017.1 19698 18970 -3 - 729 Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229926.peg.995 CDS AEJM01000017.1 20541 19777 -3 - 765 Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229926.peg.996 CDS AEJM01000017.1 20770 21549 1 + 780 DNA-binding domain of ModE / Molybdate-binding domain of ModE Molybdenum cofactor biosynthesis;
Molybdenum cofactor biosynthesis
fig|6666666.229926.peg.997 CDS AEJM01000017.1 21714 23111 3 + 1398 Arsenic efflux pump protein Arsenic resistance
fig|6666666.229926.peg.998 CDS AEJM01000017.1 23774 23178 -2 - 597 Nucleotidase YfbR, HD superfamily Housecleaning nucleoside triphosphate pyrophosphatases
fig|6666666.229926.peg.999 CDS AEJM01000017.1 24811 23783 -1 - 1029 Outer membrane stress sensor protease DegS Periplasmic Stress Response;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229926.peg.1000 CDS AEJM01000017.1 25944 24820 -3 - 1125 Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster;
Riboflavin synthesis cluster
fig|6666666.229926.peg.1001 CDS AEJM01000017.1 26396 25944 -2 - 453 Ribonucleotide reductase transcriptional regulator NrdR Ribonucleotide reduction
fig|6666666.229926.peg.1002 CDS AEJM01000017.1 26356 26532 1 + 177 hypothetical protein - none -
fig|6666666.229926.peg.1003 CDS AEJM01000017.1 27575 26514 -2 - 1062 LSU rRNA 2@1-O-methyl-C2498 methyltransferase RlmM RNA methylation
fig|6666666.229926.peg.1004 CDS AEJM01000017.1 28500 27595 -3 - 906 Glycine cleavage system transcriptional activator GcvA LysR-family proteins in Escherichia coli;
Orphan regulatory proteins
fig|6666666.229926.peg.1005 CDS AEJM01000017.1 28962 29981 3 + 1020 Branched-chain amino acid aminotransferase (EC 2.6.1.42) Alanine biosynthesis;
Pyruvate Alanine Serine Interconversions
fig|6666666.229926.peg.1006 CDS AEJM01000017.1 30348 31088 3 + 741 FIG00698611: hypothetical protein - none -
fig|6666666.229926.peg.1007 CDS AEJM01000017.1 32172 31237 -3 - 936 Malate dehydrogenase (EC 1.1.1.37) TCA Cycle
fig|6666666.229926.peg.1008 CDS AEJM01000017.1 32428 32895 1 + 468 Arginine pathway regulatory protein ArgR, repressor of arg regulon Arginine Deiminase Pathway;
Arginine and Ornithine Degradation
fig|6666666.229926.peg.1009 CDS AEJM01000017.1 32919 33806 3 + 888 Cell division inhibitor CBSS-83333.1.peg.946;
Persister Cells
fig|6666666.229926.peg.1010 CDS AEJM01000017.1 33996 34577 3 + 582 Electron transport complex protein RnfA Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229926.peg.1011 CDS AEJM01000017.1 34577 35167 2 + 591 Electron transport complex protein RnfB Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229926.peg.1012 CDS AEJM01000017.1 35168 37324 2 + 2157 Electron transport complex protein RnfC Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229926.peg.1013 CDS AEJM01000017.1 37335 38414 3 + 1080 Electron transport complex protein RnfD Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229926.peg.1014 CDS AEJM01000017.1 38424 39035 3 + 612 Electron transport complex protein RnfG Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229926.peg.1015 CDS AEJM01000017.1 39032 39820 2 + 789 Electron transport complex protein RnfE Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229926.peg.1016 CDS AEJM01000017.1 39967 40602 1 + 636 Endonuclease III (EC 4.2.99.18) DNA Repair Base Excision
fig|6666666.229926.peg.1017 CDS AEJM01000017.1 40627 42000 1 + 1374 sodium-dependent transporter - none -
fig|6666666.229926.peg.1018 CDS AEJM01000017.1 43167 42382 -3 - 786 Zinc ABC transporter, inner membrane permease protein ZnuB - none -
fig|6666666.229926.peg.1019 CDS AEJM01000017.1 43953 43180 -3 - 774 Zinc ABC transporter, ATP-binding protein ZnuC - none -
fig|6666666.229926.peg.1020 CDS AEJM01000017.1 44141 45673 2 + 1533 Cell wall endopeptidase, family M23/M37 Glutaredoxins
fig|6666666.229926.peg.1021 CDS AEJM01000017.1 46551 45793 -3 - 759 Iron(III) dicitrate transport ATP-binding protein FecE (TC 3.A.1.14.1) - none -
fig|6666666.229926.peg.1022 CDS AEJM01000017.1 47486 46563 -2 - 924 Ferric vibriobactin, enterobactin transport system, permease protein VctG (TC 3.A.1.14.6) - none -
fig|6666666.229926.peg.1023 CDS AEJM01000017.1 48459 47494 -3 - 966 Ferric anguibactin transport system permease protein fatD - none -
fig|6666666.229926.peg.1024 CDS AEJM01000017.1 49418 48519 -2 - 900 Iron compound ABC uptake transporter substrate-binding protein PiuA - none -
fig|6666666.229926.peg.1025 CDS AEJM01000017.1 49644 51620 3 + 1977 2@1,3@1-cyclic-nucleotide 2@1-phosphodiesterase (EC 3.1.4.16) Purine conversions;
pyrimidine conversions
fig|6666666.229926.peg.1026 CDS AEJM01000017.1 52616 51699 -2 - 918 formate dehydrogenase formation protein FdhE Formate hydrogenase
fig|6666666.229926.peg.1027 CDS AEJM01000017.1 52990 53406 1 + 417 Protein ygiW precursor - none -
fig|6666666.229926.peg.1028 CDS AEJM01000017.1 53606 54286 2 + 681 Two-component system response regulator QseB Orphan regulatory proteins
fig|6666666.229926.peg.1029 CDS AEJM01000017.1 54246 55640 3 + 1395 Sensory histidine kinase QseC Orphan regulatory proteins
fig|6666666.229926.peg.1030 CDS AEJM01000017.1 57497 55728 -2 - 1770 Gamma-glutamyltranspeptidase (EC 2.3.2.2) Glutathione: Biosynthesis and gamma-glutamyl cycle
fig|6666666.229926.peg.1031 CDS AEJM01000017.1 57976 57731 -1 - 246 FIG00696862: hypothetical protein - none -
fig|6666666.229926.peg.1032 CDS AEJM01000017.1 59507 58170 -2 - 1338 Argininosuccinate synthase (EC 6.3.4.5) - none -
fig|6666666.229926.peg.1033 CDS AEJM01000017.1 60423 59596 -3 - 828 Nucleoside-diphosphate-sugar epimerases - none -
fig|6666666.229926.peg.1034 CDS AEJM01000017.1 60641 60528 -2 - 114 hypothetical protein - none -
fig|6666666.229926.peg.1035 CDS AEJM01000017.1 60788 62371 2 + 1584 Peptide chain release factor 3 Translation termination factors bacterial
fig|6666666.229926.peg.1036 CDS AEJM01000017.1 62746 62447 -1 - 300 HigA protein (antitoxin to HigB) Toxin-antitoxin replicon stabilization systems
fig|6666666.229926.peg.1037 CDS AEJM01000017.1 63034 62756 -1 - 279 HigB toxin protein Toxin-antitoxin replicon stabilization systems
fig|6666666.229926.peg.1038 CDS AEJM01000017.1 66050 63117 -2 - 2934 Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42) Ammonia assimilation;
CBSS-316057.3.peg.3521
fig|6666666.229926.peg.1039 CDS AEJM01000017.1 66473 68971 2 + 2499 CRISPR-associated protein Cas3@1@1 CRISPRs
fig|6666666.229926.peg.1040 CDS AEJM01000017.1 70460 69189 -2 - 1272 transposase - none -
fig|6666666.229926.peg.1041 CDS AEJM01000017.1 70783 70505 -1 - 279 possible DNA-binding protein - none -
fig|6666666.229926.peg.1042 CDS AEJM01000017.1 71269 71682 1 + 414 transcriptional regulatory protein - none -
fig|6666666.229926.peg.1043 CDS AEJM01000017.1 71926 72591 1 + 666 CRISPR-associated protein, Csd1 family CRISPRs
fig|6666666.229926.peg.1044 CDS AEJM01000017.1 73303 74307 1 + 1005 Thiamin ABC transporter, substrate-binding component Thiamin biosynthesis
fig|6666666.229926.peg.1045 CDS AEJM01000017.1 74316 75944 3 + 1629 Thiamin ABC transporter, transmembrane component Thiamin biosynthesis
fig|6666666.229926.peg.1046 CDS AEJM01000017.1 75928 76563 1 + 636 Thiamin ABC transporter, ATPase component / Thiamine transport ATP-binding protein thiQ Thiamin biosynthesis
fig|6666666.229926.peg.1047 CDS AEJM01000017.1 76643 76951 2 + 309 FIG022160: hypothetical toxin - none -
fig|6666666.229926.peg.1048 CDS AEJM01000017.1 76948 77238 1 + 291 FIG045511: hypothetical antitoxin (to FIG022160: hypothetical toxin) - none -
fig|6666666.229926.peg.1049 CDS AEJM01000017.1 77254 78258 1 + 1005 Biotin synthase (EC 2.8.1.6) Biotin biosynthesis Experimental
fig|6666666.229926.peg.1050 CDS AEJM01000017.1 79311 79156 -3 - 156 hypothetical protein - none -
fig|6666666.229926.peg.1051 CDS AEJM01000017.1 81005 79539 -2 - 1467 PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69) Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism;
Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229926.peg.1052 CDS AEJM01000017.1 82383 81253 -3 - 1131 Sialic acid-induced transmembrane protein YjhT(NanM), possible mutarotase Sialic Acid Metabolism
fig|6666666.229926.peg.1053 CDS AEJM01000017.1 84369 82519 -3 - 1851 TRAP-type transport system, large permease component, predicted N-acetylneuraminate transporter / TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229926.peg.1054 CDS AEJM01000017.1 85419 84433 -3 - 987 TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein Sialic Acid Metabolism
fig|6666666.229926.peg.1055 CDS AEJM01000017.1 85661 86362 2 + 702 N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9) Sialic Acid Metabolism
fig|6666666.229926.peg.1056 CDS AEJM01000017.1 86377 87261 1 + 885 N-acetylmannosamine kinase (EC 2.7.1.60) Sialic Acid Metabolism
fig|6666666.229926.peg.1057 CDS AEJM01000017.1 87271 88140 1 + 870 Sialic acid utilization regulator, RpiR family Sialic Acid Metabolism
fig|6666666.229926.peg.1058 CDS AEJM01000017.1 88150 89028 1 + 879 N-acetylneuraminate lyase (EC 4.1.3.3) Sialic Acid Metabolism
fig|6666666.229926.peg.1059 CDS AEJM01000017.1 89135 89938 2 + 804 Glucosamine-6-phosphate deaminase (EC 3.5.99.6) Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism
fig|6666666.229926.peg.1060 CDS AEJM01000017.1 90018 91139 3 + 1122 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism
fig|6666666.229926.peg.1061 CDS AEJM01000018.1 1045 101 -1 - 945 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.229926.peg.1062 CDS AEJM01000018.1 1539 1045 -3 - 495 Lipoprotein signal peptidase (EC 3.4.23.36) Lipoprotein Biosynthesis;
Signal peptidase
fig|6666666.229926.peg.1063 CDS AEJM01000018.1 4443 1621 -3 - 2823 Isoleucyl-tRNA synthetase (EC 6.1.1.5) tRNA aminoacylation, Ile
fig|6666666.229926.peg.1064 CDS AEJM01000018.1 4729 4481 -1 - 249 FIG01055344: hypothetical protein - none -
fig|6666666.229926.peg.1065 CDS AEJM01000019.1 70 234 1 + 165 hypothetical protein - none -
fig|6666666.229926.peg.1066 CDS AEJM01000019.1 274 603 1 + 330 DNA uptake protein and related DNA-binding proteins - none -
fig|6666666.229926.peg.1067 CDS AEJM01000019.1 628 1308 1 + 681 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) Heat shock dnaK gene cluster extended;
Housecleaning nucleoside triphosphate pyrophosphatases
fig|6666666.229926.peg.1068 CDS AEJM01000019.1 1347 1670 3 + 324 PlcB, ORFX, ORFP, ORFB, ORFA, ldh gene - none -
fig|6666666.229926.peg.1069 CDS AEJM01000019.1 1672 2841 1 + 1170 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB CBSS-630.2.peg.3360;
Heat shock dnaK gene cluster extended;
Heme and Siroheme Biosynthesis;
Queuosine-Archaeosine Biosynthesis
fig|6666666.229926.peg.1070 CDS AEJM01000019.1 2941 3597 1 + 657 Ribose 5-phosphate isomerase A (EC 5.3.1.6) D-ribose utilization;
Pentose phosphate pathway
fig|6666666.229926.peg.1071 CDS AEJM01000019.1 3617 4849 2 + 1233 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) Glycine and Serine Utilization;
Pyridoxin (Vitamin B6) Biosynthesis;
Serine Biosynthesis
fig|6666666.229926.peg.1072 CDS AEJM01000019.1 4983 4846 -3 - 138 hypothetical protein - none -
fig|6666666.229926.peg.1073 CDS AEJM01000019.1 5157 5567 3 + 411 iron chelatin ABC transporter periplasmic-binding protein - none -
fig|6666666.229926.peg.1074 CDS AEJM01000019.1 5533 6204 1 + 672 iron chelatin ABC transporter periplasmic-binding protein - none -
fig|6666666.229926.peg.1075 CDS AEJM01000019.1 6930 6289 -3 - 642 4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) D-Galacturonate and D-Glucuronate Utilization;
Entner-Doudoroff Pathway
fig|6666666.229926.peg.1076 CDS AEJM01000019.1 8342 6939 -2 - 1404 Uronate isomerase (EC 5.3.1.12) D-Galacturonate and D-Glucuronate Utilization
fig|6666666.229926.peg.1077 CDS AEJM01000019.1 9201 8353 -3 - 849 D-mannonate oxidoreductase (EC 1.1.1.57) D-Galacturonate and D-Glucuronate Utilization
fig|6666666.229926.peg.1078 CDS AEJM01000019.1 10157 9213 -2 - 945 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) D-Galacturonate and D-Glucuronate Utilization;
D-gluconate and ketogluconates metabolism;
Entner-Doudoroff Pathway
fig|6666666.229926.peg.1079 CDS AEJM01000019.1 11206 10208 -1 - 999 TRAP-type C4-dicarboxylate transport system, periplasmic component TRAP Transporter collection
fig|6666666.229926.peg.1080 CDS AEJM01000019.1 11912 13213 2 + 1302 TRAP-type C4-dicarboxylate transport system, large permease component TRAP Transporter collection
fig|6666666.229926.peg.1081 CDS AEJM01000019.1 13237 15612 1 + 2376 Alpha-glucosidase (EC 3.2.1.20) D-Galacturonate and D-Glucuronate Utilization;
Maltose and Maltodextrin Utilization
fig|6666666.229926.peg.1082 CDS AEJM01000019.1 15628 16383 1 + 756 Hexuronate utilization operon transcriptional repressor ExuR D-Galacturonate and D-Glucuronate Utilization
fig|6666666.229926.peg.1083 CDS AEJM01000019.1 16404 17117 3 + 714 Mannonate dehydratase (EC 4.2.1.8) D-Galacturonate and D-Glucuronate Utilization
fig|6666666.229926.peg.1084 CDS AEJM01000019.1 17357 17575 2 + 219 Mannonate dehydratase (EC 4.2.1.8) D-Galacturonate and D-Glucuronate Utilization
fig|6666666.229926.peg.1085 CDS AEJM01000019.1 17601 18536 3 + 936 hypothetical protein - none -
fig|6666666.229926.peg.1086 CDS AEJM01000019.1 19045 19245 1 + 201 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229926.peg.1087 CDS AEJM01000019.1 21244 19490 -1 - 1755 Putative sulfate permease - none -
fig|6666666.229926.peg.1088 CDS AEJM01000019.1 21704 22924 2 + 1221 Phage integrase - none -
fig|6666666.229926.peg.1089 CDS AEJM01000019.1 24067 23948 -1 - 120 hypothetical protein - none -
fig|6666666.229926.peg.1090 CDS AEJM01000019.1 24111 26528 3 + 2418 ATP-dependent protease La (EC 3.4.21.53) Type I Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229926.peg.1091 CDS AEJM01000019.1 29161 27311 -1 - 1851 RNA polymerase sigma factor RpoD CBSS-349161.4.peg.2417;
Macromolecular synthesis operon;
Transcription initiation, bacterial sigma factors
fig|6666666.229926.peg.1092 CDS AEJM01000019.1 30994 29237 -1 - 1758 DNA primase (EC 2.7.7.-) CBSS-349161.4.peg.2417;
Macromolecular synthesis operon
fig|6666666.229926.peg.1093 CDS AEJM01000019.1 31331 31116 -2 - 216 SSU ribosomal protein S21p Macromolecular synthesis operon;
Ribosome SSU bacterial
fig|6666666.229926.peg.1094 CDS AEJM01000019.1 31366 31533 1 + 168 hypothetical protein - none -
fig|6666666.229926.peg.1095 CDS AEJM01000019.1 31557 32585 3 + 1029 TsaD/Kae1/Qri7 protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Macromolecular synthesis operon;
YgjD and YeaZ;
YrdC-YciO-Sua5 protein family
fig|6666666.229926.peg.1096 CDS AEJM01000019.1 32650 32883 1 + 234 unknown - none -
fig|6666666.229926.peg.1097 CDS AEJM01000019.1 32886 33464 3 + 579 Thymidine kinase (EC 2.7.1.21) pyrimidine conversions
fig|6666666.229926.peg.1098 CDS AEJM01000019.1 35548 33533 -1 - 2016 DNA ligase (EC 6.5.1.2) DNA Repair Base Excision
fig|6666666.229926.peg.1099 CDS AEJM01000019.1 36693 35653 -3 - 1041 Cell division protein ZipA Bacterial Cytoskeleton
fig|6666666.229926.peg.1100 CDS AEJM01000019.1 36834 37658 3 + 825 Sulfate transporter, CysZ-type Cysteine Biosynthesis
fig|6666666.229926.peg.1101 CDS AEJM01000019.1 37902 38708 3 + 807 Cysteine synthase (EC 2.5.1.47) Cysteine Biosynthesis;
Methionine Biosynthesis
fig|6666666.229926.peg.1102 CDS AEJM01000019.1 39051 38929 -3 - 123 hypothetical protein - none -
fig|6666666.229926.peg.1103 CDS AEJM01000019.1 39742 39161 -1 - 582 Hypothetical protein VC0266 (sugar utilization related?) VC0266
fig|6666666.229926.peg.1104 CDS AEJM01000019.1 41171 40080 -2 - 1092 GTP-binding and nucleic acid-binding protein YchF Universal GTPases
fig|6666666.229926.peg.1105 CDS AEJM01000019.1 41807 41223 -2 - 585 Peptidyl-tRNA hydrolase (EC 3.1.1.29) Cell division-ribosomal stress proteins cluster;
Sporulation-associated proteins with broader functions;
Transcription repair cluster;
Translation termination factors bacterial
fig|6666666.229926.peg.1106 CDS AEJM01000020.1 199 684 1 + 486 ATP phosphoribosyltransferase (EC 2.4.2.17) Histidine Biosynthesis;
Riboflavin synthesis cluster
fig|6666666.229926.peg.1107 CDS AEJM01000020.1 662 799 2 + 138 ATP phosphoribosyltransferase (EC 2.4.2.17) Histidine Biosynthesis;
Riboflavin synthesis cluster
fig|6666666.229926.peg.1108 CDS AEJM01000020.1 936 1169 3 + 234 Histidinol-phosphatase (EC 3.1.3.15) / Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) Histidine Biosynthesis;
Histidine Biosynthesis
fig|6666666.229926.peg.1109 CDS AEJM01000020.1 1303 1497 1 + 195 Histidinol-phosphatase (EC 3.1.3.15) / Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) Histidine Biosynthesis;
Histidine Biosynthesis
fig|6666666.229926.peg.1110 CDS AEJM01000020.1 1531 1731 1 + 201 Histidinol-phosphatase (EC 3.1.3.15) / Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) Histidine Biosynthesis;
Histidine Biosynthesis
fig|6666666.229926.peg.1111 CDS AEJM01000020.1 1835 2707 2 + 873 hypothetical protein - none -
fig|6666666.229926.peg.1112 CDS AEJM01000020.1 2704 3297 1 + 594 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) Histidine Biosynthesis
fig|6666666.229926.peg.1113 CDS AEJM01000020.1 3424 3588 1 + 165 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Histidine Biosynthesis
fig|6666666.229926.peg.1114 CDS AEJM01000020.1 3570 4124 3 + 555 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Histidine Biosynthesis
fig|6666666.229926.peg.1115 CDS AEJM01000020.1 4106 4243 2 + 138 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) Histidine Biosynthesis
fig|6666666.229926.peg.1116 CDS AEJM01000020.1 4703 4864 2 + 162 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) / Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) Histidine Biosynthesis;
Histidine Biosynthesis;
Riboflavin synthesis cluster
fig|6666666.229926.peg.1117 CDS AEJM01000020.1 5799 5215 -3 - 585 NfuA Fe-S protein maturation Biotin biosynthesis Experimental;
DNA uptake cluster
fig|6666666.229926.peg.1118 CDS AEJM01000020.1 6635 5910 -2 - 726 Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy Biotin biosynthesis Experimental;
CBSS-216591.1.peg.168
fig|6666666.229926.peg.1119 CDS AEJM01000020.1 6739 7551 1 + 813 HMP-PP hydrolase (pyridoxal phosphatase) Cof, detected in genetic screen for thiamin metabolic genes (PMID:15292217) - none -
fig|6666666.229926.peg.1120 CDS AEJM01000020.1 7736 8848 2 + 1113 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch;
Threonine and Homoserine Biosynthesis
fig|6666666.229926.peg.1121 CDS AEJM01000020.1 9641 8925 -2 - 717 Late competence protein ComEA, DNA receptor - none -
fig|6666666.229926.peg.1122 CDS AEJM01000020.1 9804 11615 3 + 1812 ClpB protein Protein chaperones;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229926.peg.1123 CDS AEJM01000020.1 11642 12373 2 + 732 ClpB protein Protein chaperones;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229926.peg.1124 CDS AEJM01000020.1 12978 12478 -3 - 501 hypothetical protein - none -
fig|6666666.229926.peg.1125 CDS AEJM01000020.1 13161 14189 3 + 1029 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) - none -
fig|6666666.229926.peg.1126 CDS AEJM01000020.1 14189 14377 2 + 189 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) 5-FCL-like protein
fig|6666666.229926.peg.1127 CDS AEJM01000020.1 14451 15275 3 + 825 Diaminopimelate epimerase (EC 5.1.1.7) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229926.peg.1128 CDS AEJM01000020.1 15285 16175 3 + 891 Tyrosine recombinase XerC - none -
fig|6666666.229926.peg.1129 CDS AEJM01000020.1 16190 16903 2 + 714 Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5@1-phosphoribitylamino)uracil phosphatase Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants
fig|6666666.229926.peg.1130 CDS AEJM01000020.1 17426 17001 -2 - 426 Excinuclease ATPase subunit - none -
fig|6666666.229926.peg.1131 CDS AEJM01000020.1 17589 17720 3 + 132 hypothetical protein - none -
fig|6666666.229926.peg.1132 CDS AEJM01000020.1 17727 18470 3 + 744 3-oxoacyl-[ACP] synthase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229926.peg.1133 CDS AEJM01000020.1 18455 19237 2 + 783 FIG018329: 1-acyl-sn-glycerol-3-phosphate acyltransferase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229926.peg.1134 CDS AEJM01000020.1 19215 19478 3 + 264 Acyl carrier protein (ACP1) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229926.peg.1135 CDS AEJM01000020.1 19481 19732 2 + 252 Acyl carrier protein (ACP2) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229926.peg.1136 CDS AEJM01000020.1 19732 21399 1 + 1668 FIGfam138462: Acyl-CoA synthetase, AMP-(fatty) acid ligase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229926.peg.1137 CDS AEJM01000020.1 21425 21970 2 + 546 FIG017861: hypothetical protein Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229926.peg.1138 CDS AEJM01000020.1 21967 23328 1 + 1362 FIGfam138462: Acyl-CoA synthetase, AMP-(fatty) acid ligase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229926.peg.1139 CDS AEJM01000020.1 23328 24050 3 + 723 FIG143263: Glycosyl transferase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229926.peg.1140 CDS AEJM01000020.1 24047 24418 2 + 372 Lysophospholipid acyltransferase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229926.peg.1141 CDS AEJM01000020.1 24460 24972 1 + 513 Lysophospholipid acyltransferase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229926.peg.1142 CDS AEJM01000020.1 24969 25415 3 + 447 FIG002571: 4-hydroxybenzoyl-CoA thioesterase domain protein Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229926.peg.1143 CDS AEJM01000020.1 25412 25996 2 + 585 FIG027190: Putative transmembrane protein Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229926.peg.1144 CDS AEJM01000020.1 26003 28276 2 + 2274 FIG021862: membrane protein, exporter Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229926.peg.1145 CDS AEJM01000020.1 28322 28885 2 + 564 FIG085779: Lipoprotein Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229926.peg.1146 CDS AEJM01000020.1 28894 30117 1 + 1224 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) FabV like Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229926.peg.1147 CDS AEJM01000020.1 30110 30553 2 + 444 3-hydroxydecanoyl-[ACP] dehydratase (EC 4.2.1.60) Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229926.peg.1148 CDS AEJM01000020.1 30603 31331 3 + 729 3-oxoacyl-[ACP] reductase (EC 1.1.1.100) Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229926.peg.1149 CDS AEJM01000020.1 31364 32608 2 + 1245 FIG138576: 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229926.peg.1150 CDS AEJM01000021.1 962 63 -2 - 900 Maltose operon periplasmic protein MalM Maltose and Maltodextrin Utilization
fig|6666666.229926.peg.1151 CDS AEJM01000021.1 2333 1050 -2 - 1284 Maltoporin (maltose/maltodextrin high-affinity receptor, phage lambda receptor protein) Maltose and Maltodextrin Utilization
fig|6666666.229926.peg.1152 CDS AEJM01000021.1 3528 2410 -3 - 1119 Maltose/maltodextrin transport ATP-binding protein MalK (EC 3.6.3.19) Maltose and Maltodextrin Utilization
fig|6666666.229926.peg.1153 CDS AEJM01000021.1 3984 5174 3 + 1191 Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein MalE Alpha-Amylase locus in Streptocococcus;
Bacterial Chemotaxis;
Maltose and Maltodextrin Utilization
fig|6666666.229926.peg.1154 CDS AEJM01000021.1 5323 6867 1 + 1545 Maltose/maltodextrin ABC transporter, permease protein MalF Maltose and Maltodextrin Utilization
fig|6666666.229926.peg.1155 CDS AEJM01000021.1 6889 7779 1 + 891 Maltose/maltodextrin ABC transporter, permease protein MalG Maltose and Maltodextrin Utilization
fig|6666666.229926.peg.1156 CDS AEJM01000022.1 147 2369 3 + 2223 Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) Murein Hydrolases
fig|6666666.229926.peg.1157 CDS AEJM01000022.1 2402 2710 2 + 309 Transcriptional repressor protein TrpR Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate);
Tryptophan synthesis
fig|6666666.229926.peg.1158 CDS AEJM01000022.1 2688 3461 3 + 774 Monofunctional biosynthetic peptidoglycan transglycosylase (EC 2.4.2.-) Peptidoglycan Biosynthesis
fig|6666666.229926.peg.1159 CDS AEJM01000022.1 3633 4796 3 + 1164 Na+/H+ antiporter NhaA type NhaA, NhaD and Sodium-dependent phosphate transporters
fig|6666666.229926.peg.1160 CDS AEJM01000022.1 5361 5107 -3 - 255 hypothetical protein - none -
fig|6666666.229926.peg.1161 CDS AEJM01000022.1 5884 5546 -1 - 339 Preprotein translocase subunit SecG (TC 3.A.5.1.1) CBSS-331978.3.peg.2915;
Murein hydrolase regulation and cell death
fig|6666666.229926.peg.1162 CDS AEJM01000022.1 7994 6057 -2 - 1938 DNA topoisomerase III (EC 5.99.1.2) DNA processing cluster;
DNA topoisomerases, Type I, ATP-independent
fig|6666666.229926.peg.1163 CDS AEJM01000022.1 8628 8026 -3 - 603 Recombination protein RecR DNA processing cluster;
DNA repair, bacterial RecFOR pathway
fig|6666666.229926.peg.1164 CDS AEJM01000022.1 9228 8713 -3 - 516 FIG000557: hypothetical protein co-occurring with RecR DNA processing cluster
fig|6666666.229926.peg.1165 CDS AEJM01000022.1 9227 10297 2 + 1071 Phosphoesterase (EC 3.1.-.-) - none -
fig|6666666.229926.peg.1166 CDS AEJM01000022.1 10439 10618 2 + 180 Iron(III) dicitrate transport ATP-binding protein FecE (TC 3.A.1.14.1) - none -
fig|6666666.229926.peg.1167 CDS AEJM01000022.1 11645 10674 -2 - 972 Translation elongation factor P Lys34:lysine transferase Translation elongation factor P lysylation
fig|6666666.229926.peg.1168 CDS AEJM01000022.1 11956 13764 1 + 1809 Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) Succinate dehydrogenase;
TCA Cycle
fig|6666666.229926.peg.1169 CDS AEJM01000022.1 13769 14539 2 + 771 Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) 5-FCL-like protein;
Succinate dehydrogenase;
TCA Cycle
fig|6666666.229926.peg.1170 CDS AEJM01000022.1 14551 14943 1 + 393 Fumarate reductase subunit C Succinate dehydrogenase
fig|6666666.229926.peg.1171 CDS AEJM01000022.1 14953 15297 1 + 345 Fumarate reductase subunit D Succinate dehydrogenase
fig|6666666.229926.peg.1172 CDS AEJM01000022.1 17558 15396 -2 - 2163 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) RNA methylation
fig|6666666.229926.peg.1173 CDS AEJM01000022.1 17771 17637 -2 - 135 hypothetical protein - none -
fig|6666666.229926.peg.1174 CDS AEJM01000022.1 17977 19005 1 + 1029 Alcohol dehydrogenase (EC 1.1.1.1) 5-FCL-like protein;
Fermentations: Mixed acid;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229926.peg.1175 CDS AEJM01000022.1 20304 19090 -3 - 1215 ATPase component BioM of energizing module of biotin ECF transporter ECF class transporters
fig|6666666.229926.peg.1176 CDS AEJM01000022.1 21127 20429 -1 - 699 Queuosine Biosynthesis QueC ATPase Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229926.peg.1177 CDS AEJM01000022.1 21259 21137 -1 - 123 hypothetical protein - none -
fig|6666666.229926.peg.1178 CDS AEJM01000022.1 21463 21927 1 + 465 FIG00710847: hypothetical protein - none -
fig|6666666.229926.peg.1179 CDS AEJM01000022.1 21900 22727 3 + 828 FIG00711691: hypothetical protein - none -
fig|6666666.229926.peg.1180 CDS AEJM01000022.1 24014 23190 -2 - 825 3@1,5@1-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17) cAMP signaling in bacteria
fig|6666666.229926.peg.1181 CDS AEJM01000022.1 24688 24065 -1 - 624 ADP-ribose pyrophosphatase (EC 3.6.1.13) CBSS-216591.1.peg.168;
NAD and NADP cofactor biosynthesis global;
Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229926.peg.1182 CDS AEJM01000022.1 25615 24935 -1 - 681 FIG009095: D,D-carboxypeptidase family protein CBSS-584.1.peg.1352
fig|6666666.229926.peg.1183 CDS AEJM01000022.1 26750 25617 -2 - 1134 N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18) A Glutathione-dependent Thiol Reductase Associated with a Step in Lysine Biosynthesis;
CBSS-584.1.peg.1352;
Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229926.peg.1184 CDS AEJM01000022.1 27122 26778 -2 - 345 FIG138056: a glutathione-dependent thiol reductase A Glutathione-dependent Thiol Reductase Associated with a Step in Lysine Biosynthesis;
CBSS-584.1.peg.1352
fig|6666666.229926.peg.1185 CDS AEJM01000022.1 29070 27190 -3 - 1881 Chaperone protein HtpG Protein chaperones
fig|6666666.229926.peg.1186 CDS AEJM01000022.1 30367 29204 -1 - 1164 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) Chorismate Synthesis;
Chorismate Synthesis;
Phenylalanine and Tyrosine Branches from Chorismate;
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229926.peg.1187 CDS AEJM01000022.1 31486 30569 -1 - 918 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC 3.5.1.108) KDO2-Lipid A biosynthesis
fig|6666666.229926.peg.1188 CDS AEJM01000022.1 32801 31524 -2 - 1278 Cell division protein FtsZ (EC 3.4.24.-) Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ;
cell division core of larger cluster
fig|6666666.229926.peg.1189 CDS AEJM01000022.1 34167 32887 -3 - 1281 Cell division protein FtsA Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ;
cell division core of larger cluster
fig|6666666.229926.peg.1190 CDS AEJM01000022.1 34959 34192 -3 - 768 Cell division protein FtsQ Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ;
cell division core of larger cluster
fig|6666666.229926.peg.1191 CDS AEJM01000022.1 35885 34956 -2 - 930 D-alanine--D-alanine ligase (EC 6.3.2.4) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo;
cell division cluster containing FtsQ
fig|6666666.229926.peg.1192 CDS AEJM01000022.1 37328 35898 -2 - 1431 UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo;
cell division cluster containing FtsQ
fig|6666666.229926.peg.1193 CDS AEJM01000022.1 38463 37399 -3 - 1065 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) Peptidoglycan Biosynthesis;
cell division core of larger cluster
fig|6666666.229926.peg.1194 CDS AEJM01000022.1 39693 38503 -3 - 1191 Cell division protein FtsW Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ
fig|6666666.229926.peg.1195 CDS AEJM01000022.1 41012 39708 -2 - 1305 UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC 6.3.2.9) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo
fig|6666666.229926.peg.1196 CDS AEJM01000022.1 42124 41039 -1 - 1086 Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC 2.7.8.13) Peptidoglycan Biosynthesis
fig|6666666.229926.peg.1197 CDS AEJM01000022.1 43497 42118 -3 - 1380 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase (EC 6.3.2.10) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo
fig|6666666.229926.peg.1198 CDS AEJM01000022.1 44971 43505 -1 - 1467 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo
fig|6666666.229926.peg.1199 CDS AEJM01000022.1 46812 44989 -3 - 1824 Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129) 16S rRNA modification within P site of ribosome;
Bacterial Cell Division;
Bacterial Cytoskeleton;
CBSS-83331.1.peg.3039;
Peptidoglycan Biosynthesis
fig|6666666.229926.peg.1200 CDS AEJM01000022.1 47147 46830 -2 - 318 Cell division protein FtsL 16S rRNA modification within P site of ribosome;
Bacterial Cell Division;
Bacterial Cytoskeleton;
Stationary phase repair cluster
fig|6666666.229926.peg.1201 CDS AEJM01000022.1 48115 47147 -1 - 969 rRNA small subunit methyltransferase H 16S rRNA modification within P site of ribosome;
Bacterial Cell Division
fig|6666666.229926.peg.1202 CDS AEJM01000022.1 48683 48225 -2 - 459 Cell division protein MraZ 16S rRNA modification within P site of ribosome;
Bacterial Cell Division;
Bacterial Cytoskeleton
fig|6666666.229926.peg.1203 CDS AEJM01000022.1 50543 48945 -2 - 1599 Carbon starvation protein A Carbon Starvation
fig|6666666.229926.peg.1204 CDS AEJM01000022.1 51767 51084 -2 - 684 Arginine ABC transporter, permease protein ArtM Arginine and Ornithine Degradation
fig|6666666.229926.peg.1205 CDS AEJM01000022.1 52432 51770 -1 - 663 Arginine ABC transporter, permease protein ArtQ Arginine and Ornithine Degradation
fig|6666666.229926.peg.1206 CDS AEJM01000022.1 53156 52437 -2 - 720 Arginine ABC transporter, periplasmic arginine-binding protein ArtI Arginine and Ornithine Degradation
fig|6666666.229926.peg.1207 CDS AEJM01000022.1 53890 53177 -1 - 714 Arginine ABC transporter, ATP-binding protein ArtP Arginine and Ornithine Degradation
fig|6666666.229926.peg.1208 CDS AEJM01000022.1 54636 54052 -3 - 585 Phosphoheptose isomerase 1 (EC 5.3.1.-) LOS core oligosaccharide biosynthesis
fig|6666666.229926.peg.1209 CDS AEJM01000022.1 58195 54725 -1 - 3471 Transcription-repair coupling factor Cell division-ribosomal stress proteins cluster;
Transcription factors bacterial;
Transcription repair cluster
fig|6666666.229926.peg.1210 CDS AEJM01000022.1 58496 58323 -2 - 174 hypothetical protein - none -
fig|6666666.229926.peg.1211 CDS AEJM01000022.1 60460 58538 -1 - 1923 Predicted P-loop ATPase fused to an acetyltransferase COG1444 tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229926.peg.1212 CDS AEJM01000022.1 61165 60464 -1 - 702 unknown - none -
fig|6666666.229926.peg.1213 CDS AEJM01000022.1 61792 61328 -1 - 465 Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly CBSS-56780.10.peg.1536;
Glycyl-tRNA synthetase containing cluster;
tRNA-methylthiotransferase containing cluster
fig|6666666.229926.peg.1214 CDS AEJM01000022.1 63176 63352 2 + 177 Type IV prepilin peptidase TadV/CpaA Widespread colonization island
fig|6666666.229926.peg.1215 CDS AEJM01000022.1 63408 64232 3 + 825 Flp pilus assembly protein RcpC/CpaB Widespread colonization island
fig|6666666.229926.peg.1216 CDS AEJM01000022.1 64234 65616 1 + 1383 Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly Widespread colonization island
fig|6666666.229926.peg.1217 CDS AEJM01000022.1 65613 66116 3 + 504 Flp pilus assembly protein RcpB Widespread colonization island
fig|6666666.229926.peg.1218 CDS AEJM01000022.1 66132 67256 3 + 1125 Type II/IV secretion system ATPase TadZ/CpaE, associated with Flp pilus assembly Widespread colonization island
fig|6666666.229926.peg.1219 CDS AEJM01000022.1 67270 68550 1 + 1281 Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily Widespread colonization island
fig|6666666.229926.peg.1220 CDS AEJM01000022.1 68550 69437 3 + 888 Flp pilus assembly protein TadB Widespread colonization island
fig|6666666.229926.peg.1221 CDS AEJM01000022.1 69434 70300 2 + 867 Type II/IV secretion system protein TadC, associated with Flp pilus assembly Widespread colonization island
fig|6666666.229926.peg.1222 CDS AEJM01000022.1 70290 71051 3 + 762 Flp pilus assembly protein TadD, contains TPR repeat Widespread colonization island
fig|6666666.229926.peg.1223 CDS AEJM01000022.1 71005 71643 1 + 639 Flp pilus assembly membrane protein TadE Widespread colonization island
fig|6666666.229926.peg.1224 CDS AEJM01000022.1 72307 73902 1 + 1596 Protein TadG, associated with Flp pilus assembly Widespread colonization island
fig|6666666.229926.peg.1225 CDS AEJM01000022.1 74510 74376 -2 - 135 hypothetical protein - none -
fig|6666666.229926.peg.1226 CDS AEJM01000023.1 1080 1205 3 + 126 hypothetical protein - none -
fig|6666666.229926.peg.1227 CDS AEJM01000023.1 1352 1879 2 + 528 DNA transformation protein TfoX CBSS-83333.1.peg.946;
Orphan regulatory proteins
fig|6666666.229926.peg.1228 CDS AEJM01000023.1 2793 1945 -3 - 849 RNA polymerase sigma factor RpoH Heat shock dnaK gene cluster extended;
Transcription initiation, bacterial sigma factors
fig|6666666.229926.peg.1229 CDS AEJM01000023.1 3292 2978 -1 - 315 Uncharacterized protein conserved in bacteria - none -
fig|6666666.229926.peg.1230 CDS AEJM01000023.1 4332 3307 -3 - 1026 UDP-N-acetylenolpyruvoylglucosamine reductase (EC 1.1.1.158) Peptidoglycan Biosynthesis;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229926.peg.1231 CDS AEJM01000023.1 6050 4347 -2 - 1704 Nitrate/nitrite sensor protein (EC 2.7.3.-) - none -
fig|6666666.229926.peg.1232 CDS AEJM01000023.1 6326 6610 2 + 285 Periplasmic nitrate reductase component NapD - none -
fig|6666666.229926.peg.1233 CDS AEJM01000023.1 6646 9132 1 + 2487 Periplasmic nitrate reductase precursor (EC 1.7.99.4) - none -
fig|6666666.229926.peg.1234 CDS AEJM01000023.1 9102 9239 3 + 138 hypothetical protein - none -
fig|6666666.229926.peg.1235 CDS AEJM01000023.1 9205 10020 1 + 816 Ferredoxin-type protein NapG (periplasmic nitrate reductase) - none -
fig|6666666.229926.peg.1236 CDS AEJM01000023.1 10020 10901 3 + 882 Polyferredoxin NapH (periplasmic nitrate reductase) - none -
fig|6666666.229926.peg.1237 CDS AEJM01000023.1 10939 11388 1 + 450 Nitrate reductase cytochrome c550-type subunit - none -
fig|6666666.229926.peg.1238 CDS AEJM01000023.1 11402 12037 2 + 636 Cytochrome c-type protein NapC - none -
fig|6666666.229926.peg.1239 CDS AEJM01000023.1 14018 12123 -2 - 1896 Glutathionylspermidine synthase (EC 6.3.1.8) / Glutathionylspermidine amidohydrolase (EC 3.5.1.78) Glutathionylspermidine and Trypanothione;
Glutathionylspermidine and Trypanothione
fig|6666666.229926.peg.1240 CDS AEJM01000023.1 15179 14136 -2 - 1044 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) LOS core oligosaccharide biosynthesis
fig|6666666.229926.peg.1241 CDS AEJM01000023.1 16326 15199 -3 - 1128 Fic family protein - none -
fig|6666666.229926.peg.1242 CDS AEJM01000023.1 17423 16497 -2 - 927 ADP-L-glycero-D-manno-heptose-6-epimerase (EC 5.1.3.20) LOS core oligosaccharide biosynthesis
fig|6666666.229926.peg.1243 CDS AEJM01000023.1 17703 18479 3 + 777 Protein HI0205 precursor - none -
fig|6666666.229926.peg.1244 CDS AEJM01000023.1 18506 20320 2 + 1815 5@1-nucleotidase (EC 3.1.3.5); NAD pyrophosphatase, periplasmic (EC 3.6.1.22) Purine conversions;
pyrimidine conversions
fig|6666666.229926.peg.1245 CDS AEJM01000023.1 20750 20427 -2 - 324 hypothetical protein - none -
fig|6666666.229926.peg.1246 CDS AEJM01000023.1 21124 20807 -1 - 318 Mannose-6-phosphate isomerase (EC 5.3.1.8) Mannose Metabolism
fig|6666666.229926.peg.1247 CDS AEJM01000023.1 23940 21139 -3 - 2802 DNA polymerase I (EC 2.7.7.7) DNA Repair Base Excision
fig|6666666.229926.peg.1248 CDS AEJM01000023.1 24155 24718 2 + 564 Outer membrane protein 18/16 - none -
fig|6666666.229926.peg.1249 CDS AEJM01000023.1 24821 25051 2 + 231 FIG00696102: hypothetical protein - none -
fig|6666666.229926.peg.1250 CDS AEJM01000023.1 25061 27076 2 + 2016 ATP-dependent DNA helicase Rep DNA repair, bacterial UvrD and related helicases
fig|6666666.229926.peg.1251 CDS AEJM01000023.1 27972 27592 -3 - 381 FIG00782409: hypothetical protein - none -
fig|6666666.229926.peg.1252 CDS AEJM01000023.1 28100 28702 2 + 603 Putative phosphatase YqaB 2-phosphoglycolate salvage
fig|6666666.229926.peg.1253 CDS AEJM01000023.1 28702 29307 1 + 606 Galactoside O-acetyltransferase (EC 2.3.1.18) - none -
fig|6666666.229926.peg.1254 CDS AEJM01000023.1 29310 29795 3 + 486 Putative membrane protein - none -
fig|6666666.229926.peg.1255 CDS AEJM01000023.1 30008 30514 2 + 507 S-ribosylhomocysteine lyase (EC 4.4.1.21) / Autoinducer-2 production protein LuxS Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon);
Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229926.peg.1256 CDS AEJM01000023.1 30684 30836 3 + 153 hypothetical protein - none -
fig|6666666.229926.peg.1257 CDS AEJM01000023.1 31492 30833 -1 - 660 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses;
Ribosome biogenesis bacterial;
tRNA modification Bacteria
fig|6666666.229926.peg.1258 CDS AEJM01000023.1 31872 32561 3 + 690 Ribosyl nicotinamide transporter, PnuC-like NAD and NADP cofactor biosynthesis global
fig|6666666.229926.peg.1259 CDS AEJM01000023.1 32521 32664 1 + 144 hypothetical protein - none -
fig|6666666.229926.peg.1260 CDS AEJM01000023.1 33341 32649 -2 - 693 tRNA (adenine37-N(6))-methyltransferase TrmN6 (EC 2.1.1.223) RNA methylation
fig|6666666.229926.peg.1261 CDS AEJM01000023.1 33453 33325 -3 - 129 hypothetical protein - none -
fig|6666666.229926.peg.1262 CDS AEJM01000023.1 33440 34771 2 + 1332 ATP-dependent RNA helicase SrmB - none -
fig|6666666.229926.peg.1263 CDS AEJM01000023.1 34797 34967 3 + 171 Catalase (EC 1.11.1.6) Oxidative stress;
Protection from Reactive Oxygen Species
fig|6666666.229926.peg.1264 CDS AEJM01000023.1 35167 36468 1 + 1302 Predicted ATPase (AAA+ superfamily) - none -
fig|6666666.229926.peg.1265 CDS AEJM01000023.1 37774 37142 -1 - 633 Pyridoxamine 5@1-phosphate oxidase (EC 1.4.3.5) Pyridoxin (Vitamin B6) Biosynthesis
fig|6666666.229926.peg.1266 CDS AEJM01000023.1 37945 39270 1 + 1326 Hexose phosphate uptake regulatory protein UhpC - none -
fig|6666666.229926.peg.1267 CDS AEJM01000023.1 39281 39427 2 + 147 hypothetical protein - none -
fig|6666666.229926.peg.1268 CDS AEJM01000023.1 39683 39390 -2 - 294 AagD - none -
fig|6666666.229926.peg.1269 CDS AEJM01000023.1 40921 39686 -1 - 1236 Biofilm PGA synthesis N-glycosyltransferase PgaC (EC 2.4.-.-) Biofilm Adhesin Biosynthesis
fig|6666666.229926.peg.1270 CDS AEJM01000023.1 42840 40930 -3 - 1911 Biofilm PGA synthesis deacetylase PgaB (EC 3.-) Biofilm Adhesin Biosynthesis
fig|6666666.229926.peg.1271 CDS AEJM01000023.1 45243 42856 -3 - 2388 Biofilm PGA outer membrane secretin PgaA Biofilm Adhesin Biosynthesis
fig|6666666.229926.peg.1272 CDS AEJM01000023.1 46265 45546 -2 - 720 Purine nucleoside phosphorylase (EC 2.4.2.1) Adenosyl nucleosidases;
Deoxyribose and Deoxynucleoside Catabolism;
Purine conversions;
pyrimidine conversions
fig|6666666.229926.peg.1273 CDS AEJM01000023.1 47643 46393 -3 - 1251 Na+ dependent nucleoside transporter NupC Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.229926.peg.1274 CDS AEJM01000023.1 49108 47933 -1 - 1176 Cof protein - none -
fig|6666666.229926.peg.1275 CDS AEJM01000024.1 1183 776 -1 - 408 Lactoylglutathione lyase (EC 4.4.1.5) Glutathione: Non-redox reactions;
Methylglyoxal Metabolism
fig|6666666.229926.peg.1276 CDS AEJM01000024.1 3290 1338 -2 - 1953 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229926.peg.1277 CDS AEJM01000024.1 3692 5023 2 + 1332 Glycerol-3-phosphate transporter - none -
fig|6666666.229926.peg.1278 CDS AEJM01000024.1 5165 7732 2 + 2568 FIG00362583: hypothetical protein - none -
fig|6666666.229926.peg.1279 CDS AEJM01000024.1 8536 7811 -1 - 726 tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229926.peg.1280 CDS AEJM01000024.1 9126 8599 -3 - 528 membrane protein, putative - none -
fig|6666666.229926.peg.1281 CDS AEJM01000024.1 9335 11113 2 + 1779 Aspartyl-tRNA synthetase (EC 6.1.1.12) tRNA aminoacylation, Asp and Asn
fig|6666666.229926.peg.1282 CDS AEJM01000024.1 11196 11312 3 + 117 hypothetical protein - none -
fig|6666666.229926.peg.1283 CDS AEJM01000024.1 11499 12767 3 + 1269 Mn2+ and Fe2+ transporters of the NRAMP family - none -
fig|6666666.229926.peg.1284 CDS AEJM01000024.1 12948 13319 3 + 372 Dihydroneopterin triphosphate pyrophosphohydolase type 2 Queuosine-Archaeosine Biosynthesis
fig|6666666.229926.peg.1285 CDS AEJM01000024.1 13353 14093 3 + 741 FIG000859: hypothetical protein YebC Riboflavin, FMN and FAD metabolism in plants;
RuvABC plus a hypothetical
fig|6666666.229926.peg.1286 CDS AEJM01000024.1 14105 14515 2 + 411 excinuclease ABC subunit A - none -
fig|6666666.229926.peg.1287 CDS AEJM01000024.1 14571 15143 3 + 573 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) RuvABC plus a hypothetical
fig|6666666.229926.peg.1288 CDS AEJM01000024.1 15207 15821 3 + 615 Holliday junction DNA helicase RuvA RuvABC plus a hypothetical
fig|6666666.229926.peg.1289 CDS AEJM01000024.1 15836 16849 2 + 1014 Holliday junction DNA helicase RuvB RuvABC plus a hypothetical
fig|6666666.229926.peg.1290 CDS AEJM01000024.1 17188 16904 -1 - 285 Chromosome segregation ATPases - none -
fig|6666666.229926.peg.1291 CDS AEJM01000024.1 17678 19243 2 + 1566 Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229926.peg.1292 CDS AEJM01000024.1 19258 20394 1 + 1137 Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229926.peg.1293 CDS AEJM01000024.1 20671 20796 1 + 126 FIG00362582: hypothetical protein - none -
fig|6666666.229926.peg.1294 CDS AEJM01000024.1 20912 21316 2 + 405 4-hydroxybenzoyl-CoA thioesterase family active site Ton and Tol transport systems
fig|6666666.229926.peg.1295 CDS AEJM01000024.1 21346 22035 1 + 690 MotA/TolQ/ExbB proton channel family protein Ton and Tol transport systems
fig|6666666.229926.peg.1296 CDS AEJM01000024.1 22121 22543 2 + 423 Tol biopolymer transport system, TolR protein Ton and Tol transport systems
fig|6666666.229926.peg.1297 CDS AEJM01000024.1 22560 23750 3 + 1191 TolA protein Ton and Tol transport systems
fig|6666666.229926.peg.1298 CDS AEJM01000024.1 23785 25065 1 + 1281 tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins Ton and Tol transport systems
fig|6666666.229926.peg.1299 CDS AEJM01000024.1 25080 25547 3 + 468 18K peptidoglycan-associated outer membrane lipoprotein; Peptidoglycan-associated lipoprotein precursor; Outer membrane protein P6; OmpA/MotB precursor Ton and Tol transport systems
fig|6666666.229926.peg.1300 CDS AEJM01000024.1 27016 25973 -1 - 1044 Single-stranded DNA-binding protein DNA repair, bacterial;
DNA repair, bacterial RecFOR pathway
fig|6666666.229926.peg.1301 CDS AEJM01000024.1 27266 27081 -2 - 186 phage-related exonuclease - none -
fig|6666666.229926.peg.1302 CDS AEJM01000024.1 27650 27805 2 + 156 hypothetical protein - none -
fig|6666666.229926.peg.1303 CDS AEJM01000024.1 28376 29029 2 + 654 Phage tail fibers Phage tail fiber proteins
fig|6666666.229926.peg.1304 CDS AEJM01000024.1 29117 29311 2 + 195 Phage protein - none -
fig|6666666.229926.peg.1305 CDS AEJM01000024.1 29287 29418 1 + 132 hypothetical protein - none -
fig|6666666.229926.peg.1306 CDS AEJM01000024.1 30250 29810 -1 - 441 GepA protein - none -
fig|6666666.229926.peg.1307 CDS AEJM01000024.1 30462 30647 3 + 186 Type II secretory pathway, pseudopilin PulG - none -
fig|6666666.229926.peg.1308 CDS AEJM01000024.1 30661 31377 1 + 717 Type II secretory pathway, component PulJ - none -
fig|6666666.229926.peg.1309 CDS AEJM01000024.1 31374 32069 3 + 696 FIG00696574: hypothetical protein - none -
fig|6666666.229926.peg.1310 CDS AEJM01000024.1 32044 32346 1 + 303 FIG00696353: hypothetical protein - none -
fig|6666666.229926.peg.1311 CDS AEJM01000024.1 32392 35772 1 + 3381 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) DNA repair, bacterial RecBCD pathway
fig|6666666.229926.peg.1312 CDS AEJM01000024.1 36217 35774 -1 - 444 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Ribosome biogenesis bacterial;
YrdC-YciO-Sua5 protein family
fig|6666666.229926.peg.1313 CDS AEJM01000024.1 36676 36227 -1 - 450 DNA polymerase III psi subunit (EC 2.7.7.7) - none -
fig|6666666.229926.peg.1314 CDS AEJM01000024.1 36732 37736 3 + 1005 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) RNA methylation
fig|6666666.229926.peg.1315 CDS AEJM01000024.1 37823 37972 2 + 150 hypothetical protein - none -
fig|6666666.229926.peg.1316 CDS AEJM01000024.1 38352 38894 3 + 543 hypothetical protein - none -
fig|6666666.229926.peg.1317 CDS AEJM01000024.1 39029 40291 2 + 1263 Serine hydroxymethyltransferase (EC 2.1.2.1) 5-FCL-like protein;
Glycine Biosynthesis;
Glycine and Serine Utilization;
Serine Biosynthesis;
YrdC-YciO-Sua5 protein family
fig|6666666.229926.peg.1318 CDS AEJM01000024.1 41399 41905 2 + 507 RTX toxin activating lysine-acyltransferase (EC 2.3.1.-) - none -
fig|6666666.229926.peg.1319 CDS AEJM01000024.1 41918 45085 2 + 3168 bifunctional hemolysin-adenylate cyclase precursor cAMP signaling in bacteria
fig|6666666.229926.peg.1320 CDS AEJM01000024.1 45154 47277 1 + 2124 Methionine ABC transporter ATP-binding protein Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229926.peg.1321 CDS AEJM01000024.1 47292 48725 3 + 1434 RTX toxin transporter, determinant D # Leukotoxin secretion protein D - none -
fig|6666666.229926.peg.1322 CDS AEJM01000024.1 49135 51015 1 + 1881 PTS system, mannitol-specific IIC component (EC 2.7.1.69) / PTS system, mannitol-specific IIB component (EC 2.7.1.69) / PTS system, mannitol-specific IIA component (EC 2.7.1.69) Mannitol Utilization;
Mannitol Utilization;
Mannitol Utilization
fig|6666666.229926.peg.1323 CDS AEJM01000024.1 51093 52241 3 + 1149 Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17) Mannitol Utilization
fig|6666666.229926.peg.1324 CDS AEJM01000024.1 52316 52828 2 + 513 Mannitol operon repressor Mannitol Utilization
fig|6666666.229926.peg.1325 CDS AEJM01000024.1 53943 52933 -3 - 1011 Myo-inositol 2-dehydrogenase 1 (EC 1.1.1.18) Inositol catabolism
fig|6666666.229926.peg.1326 CDS AEJM01000024.1 54842 53946 -2 - 897 Inosose dehydratase (EC 4.2.1.44) Inositol catabolism
fig|6666666.229926.peg.1327 CDS AEJM01000024.1 56844 54898 -3 - 1947 Epi-inositol hydrolase (EC 3.7.1.-) Inositol catabolism
fig|6666666.229926.peg.1328 CDS AEJM01000024.1 57153 59060 3 + 1908 5-keto-2-deoxygluconokinase (EC 2.7.1.92) / uncharacterized domain Inositol catabolism;
Inositol catabolism
fig|6666666.229926.peg.1329 CDS AEJM01000024.1 59932 59099 -1 - 834 Predicted transcriptional regulator of the myo-inositol catabolic operon Inositol catabolism
fig|6666666.229926.peg.1330 CDS AEJM01000024.1 60887 60057 -2 - 831 5-deoxy-glucuronate isomerase (EC 5.3.1.-) Inositol catabolism
fig|6666666.229926.peg.1331 CDS AEJM01000024.1 61150 61953 1 + 804 Inositol-1-monophosphatase (EC 3.1.3.25) - none -
fig|6666666.229926.peg.1332 CDS AEJM01000024.1 61971 63314 3 + 1344 putative hexose phosphate transport protein - none -
fig|6666666.229926.peg.1333 CDS AEJM01000024.1 63552 65060 3 + 1509 Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27) Inositol catabolism
fig|6666666.229926.peg.1334 CDS AEJM01000024.1 65151 66290 3 + 1140 Myo-inositol 2-dehydrogenase 2 (EC 1.1.1.18) Inositol catabolism
fig|6666666.229926.peg.1335 CDS AEJM01000024.1 66593 67531 2 + 939 Inositol transport system sugar-binding protein Inositol catabolism
fig|6666666.229926.peg.1336 CDS AEJM01000024.1 67613 68545 2 + 933 Inositol transport system sugar-binding protein Inositol catabolism
fig|6666666.229926.peg.1337 CDS AEJM01000024.1 68614 70119 1 + 1506 Inositol transport system ATP-binding protein Inositol catabolism
fig|6666666.229926.peg.1338 CDS AEJM01000024.1 70171 71124 1 + 954 Inositol transport system permease protein Inositol catabolism
fig|6666666.229926.peg.1339 CDS AEJM01000024.1 73827 71206 -3 - 2622 Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) 5-FCL-like protein;
Fermentations: Lactate;
Fermentations: Mixed acid;
Fermentations: Mixed acid;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229926.peg.1340 CDS AEJM01000024.1 73957 74097 1 + 141 hypothetical protein - none -
fig|6666666.229926.peg.1341 CDS AEJM01000024.1 76803 74176 -3 - 2628 Iron siderophore receptor protein - none -
fig|6666666.229926.peg.1342 CDS AEJM01000024.1 78035 77034 -2 - 1002 Protein-export membrane protein SecF (TC 3.A.5.1.1) CBSS-211586.1.peg.2832
fig|6666666.229926.peg.1343 CDS AEJM01000024.1 79866 78016 -3 - 1851 Protein-export membrane protein SecD (TC 3.A.5.1.1) CBSS-211586.1.peg.2832
fig|6666666.229926.peg.1344 CDS AEJM01000024.1 80196 79897 -3 - 300 Preprotein translocase subunit YajC (TC 3.A.5.1.1) CBSS-211586.1.peg.2832
fig|6666666.229926.peg.1345 CDS AEJM01000024.1 80338 80478 1 + 141 hypothetical protein - none -
fig|6666666.229926.peg.1346 CDS AEJM01000024.1 80927 80460 -2 - 468 Ribonuclease HI (EC 3.1.26.4) CBSS-228410.1.peg.134;
CBSS-342610.3.peg.1536;
Ribonuclease H
fig|6666666.229926.peg.1347 CDS AEJM01000024.1 80995 81756 1 + 762 DNA polymerase III epsilon subunit (EC 2.7.7.7) CBSS-228410.1.peg.134;
CBSS-342610.3.peg.1536
fig|6666666.229926.peg.1348 CDS AEJM01000024.1 82201 82458 1 + 258 RelB/StbD replicon stabilization protein (antitoxin to RelE/StbE) Toxin-antitoxin replicon stabilization systems
fig|6666666.229926.peg.1349 CDS AEJM01000024.1 82448 82738 2 + 291 StbE replicon stabilization toxin - none -
fig|6666666.229926.peg.1350 CDS AEJM01000024.1 83137 82799 -1 - 339 conserved hypothetical protein - none -
fig|6666666.229926.peg.1351 CDS AEJM01000024.1 83302 83436 1 + 135 hypothetical protein - none -
fig|6666666.229926.peg.1352 CDS AEJM01000024.1 83480 84541 2 + 1062 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) Ammonia assimilation;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229926.peg.1353 CDS AEJM01000024.1 84636 84508 -3 - 129 hypothetical protein - none -
fig|6666666.229926.peg.1354 CDS AEJM01000024.1 84709 86097 1 + 1389 Putative protease - none -
fig|6666666.229926.peg.1355 CDS AEJM01000024.1 86213 86332 2 + 120 hypothetical protein - none -
fig|6666666.229926.peg.1356 CDS AEJM01000024.1 86619 86954 3 + 336 transcriptional regulator, putative - none -
fig|6666666.229926.peg.1357 CDS AEJM01000024.1 87021 87392 3 + 372 transcriptional regulator, putative - none -
fig|6666666.229926.peg.1358 CDS AEJM01000024.1 87393 87512 3 + 120 hypothetical protein - none -
fig|6666666.229926.peg.1359 CDS AEJM01000024.1 87525 87776 3 + 252 hypothetical protein - none -
fig|6666666.229926.peg.1360 CDS AEJM01000024.1 87786 88766 3 + 981 NgrB - none -
fig|6666666.229926.peg.1361 CDS AEJM01000024.1 88776 89630 3 + 855 NgrB - none -
fig|6666666.229926.peg.1362 CDS AEJM01000024.1 89642 90283 2 + 642 ABC-type Fe3+-hydroxamate transport system, periplasmic component - none -
fig|6666666.229926.peg.1363 CDS AEJM01000024.1 90399 90734 3 + 336 hypothetical protein - none -
fig|6666666.229926.peg.1364 CDS AEJM01000024.1 90823 90939 1 + 117 hypothetical protein - none -
fig|6666666.229926.peg.1365 CDS AEJM01000024.1 91030 92121 1 + 1092 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) CBSS-211586.1.peg.2832;
Queuosine-Archaeosine Biosynthesis;
Scaffold proteins for [4Fe-4S] cluster assembly (MRP family);
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229926.peg.1366 CDS AEJM01000024.1 93302 92166 -2 - 1137 Periplasmic aromatic amino acid aminotransferase beta precursor (EC 2.6.1.57) Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229926.peg.1367 CDS AEJM01000024.1 93491 93372 -2 - 120 hypothetical protein - none -
fig|6666666.229926.peg.1368 CDS AEJM01000024.1 93780 94925 3 + 1146 tRNA-guanine transglycosylase (EC 2.4.2.29) CBSS-211586.1.peg.2832;
Queuosine-Archaeosine Biosynthesis;
Scaffold proteins for [4Fe-4S] cluster assembly (MRP family);
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229926.peg.1369 CDS AEJM01000025.1 1373 42 -2 - 1332 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229926.peg.1370 CDS AEJM01000025.1 1512 1384 -3 - 129 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) @ Histidinol-phosphate aminotransferase (EC 2.6.1.9) Histidine Biosynthesis;
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229926.peg.1371 CDS AEJM01000025.1 2482 1505 -1 - 978 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) @ Histidinol-phosphate aminotransferase (EC 2.6.1.9) Histidine Biosynthesis;
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229926.peg.1372 CDS AEJM01000025.1 3781 2594 -1 - 1188 Phosphoserine aminotransferase (EC 2.6.1.52) Glycine and Serine Utilization;
Pyridoxin (Vitamin B6) Biosynthesis;
Serine Biosynthesis
fig|6666666.229926.peg.1373 CDS AEJM01000025.1 3981 4313 3 + 333 UPF0265 protein YeeX Broadly distributed proteins not in subsystems
fig|6666666.229926.peg.1374 CDS AEJM01000025.1 6057 4468 -3 - 1590 L-lactate permease Lactate utilization
fig|6666666.229926.peg.1375 CDS AEJM01000025.1 7441 6296 -1 - 1146 L-lactate dehydrogenase (EC 1.1.2.3) Lactate utilization;
Respiratory dehydrogenases 1
fig|6666666.229926.peg.1376 CDS AEJM01000025.1 7886 7740 -2 - 147 hypothetical protein - none -
fig|6666666.229926.peg.1377 CDS AEJM01000025.1 9013 8063 -1 - 951 Ribose-phosphate pyrophosphokinase (EC 2.7.6.1) A Gammaproteobacteria Cluster Relating to Translation;
Pentose phosphate pathway;
Transcription repair cluster
fig|6666666.229926.peg.1378 CDS AEJM01000025.1 9965 9054 -2 - 912 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148) A Gammaproteobacteria Cluster Relating to Translation;
Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.229926.peg.1379 CDS AEJM01000025.1 10588 9962 -1 - 627 Outer membrane lipoprotein LolB precursor - none -
fig|6666666.229926.peg.1380 CDS AEJM01000025.1 11925 10648 -3 - 1278 tRNA nucleotidyltransferase (EC 2.7.7.21) (EC 2.7.7.25) Polyadenylation bacterial;
tRNA nucleotidyltransferase
fig|6666666.229926.peg.1381 CDS AEJM01000025.1 12536 11925 -2 - 612 SH3 domain protein - none -
fig|6666666.229926.peg.1382 CDS AEJM01000025.1 13807 12605 -1 - 1203 Probable low-affinity inorganic phosphate transporter Phosphate metabolism
fig|6666666.229926.peg.1383 CDS AEJM01000025.1 14575 13895 -1 - 681 Phosphate transport regulator (distant homolog of PhoU) Phosphate metabolism
fig|6666666.229926.peg.1384 CDS AEJM01000025.1 14740 15894 1 + 1155 Adenylate cyclase (EC 4.6.1.1) cAMP signaling in bacteria
fig|6666666.229926.peg.1385 CDS AEJM01000025.1 15898 17373 1 + 1476 DNA repair protein RadA DNA repair, bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229926.peg.1386 CDS AEJM01000025.1 18112 18591 1 + 480 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229926.peg.1387 CDS AEJM01000025.1 18595 21342 1 + 2748 Cell division protein FtsK Bacterial Cell Division;
Bacterial Cytoskeleton;
Bacterial RNA-metabolizing Zn-dependent hydrolases;
CBSS-83333.1.peg.876
fig|6666666.229926.peg.1388 CDS AEJM01000025.1 21441 22058 3 + 618 Outer membrane lipoprotein carrier protein LolA CBSS-83333.1.peg.876;
Lipopolysaccharide assembly;
Lipoprotein sorting system
fig|6666666.229926.peg.1389 CDS AEJM01000025.1 22071 23411 3 + 1341 FIG065221: Holliday junction DNA helicase CBSS-83333.1.peg.876
fig|6666666.229926.peg.1390 CDS AEJM01000025.1 23578 23700 1 + 123 hypothetical protein - none -
fig|6666666.229926.peg.1391 CDS AEJM01000025.1 25460 23793 -2 - 1668 C4-dicarboxylate transporter DcuB - none -
fig|6666666.229926.peg.1392 CDS AEJM01000025.1 25770 27086 3 + 1317 Seryl-tRNA synthetase (EC 6.1.1.11) CBSS-326442.4.peg.1852;
Glycine and Serine Utilization;
tRNA aminoacylation, Ser
fig|6666666.229926.peg.1393 CDS AEJM01000025.1 28061 27165 -2 - 897 Cytidine deaminase (EC 3.5.4.5) Murein hydrolase regulation and cell death;
pyrimidine conversions;
tRNA modification Bacteria
fig|6666666.229926.peg.1394 CDS AEJM01000025.1 29282 28185 -2 - 1098 ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1) Polyamine Metabolism
fig|6666666.229926.peg.1395 CDS AEJM01000025.1 30186 29413 -3 - 774 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) Polyamine Metabolism
fig|6666666.229926.peg.1396 CDS AEJM01000025.1 30908 30186 -2 - 723 Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) Polyamine Metabolism
fig|6666666.229926.peg.1397 CDS AEJM01000025.1 32148 31030 -3 - 1119 Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) Polyamine Metabolism
fig|6666666.229926.peg.1398 CDS AEJM01000025.1 32412 33656 3 + 1245 Tripeptide aminopeptidase (EC 3.4.11.4) - none -
fig|6666666.229926.peg.1399 CDS AEJM01000025.1 36389 33732 -2 - 2658 Paraquat-inducible protein B Oxidative stress
fig|6666666.229926.peg.1400 CDS AEJM01000025.1 37635 36352 -3 - 1284 Paraquat-inducible protein A Oxidative stress
fig|6666666.229926.peg.1401 CDS AEJM01000025.1 37860 38468 3 + 609 ProQ: influences osmotic activation of compatible solute ProP - none -
fig|6666666.229926.peg.1402 CDS AEJM01000025.1 38542 40599 1 + 2058 Tail-specific protease precursor (EC 3.4.21.102) - none -
fig|6666666.229926.peg.1403 CDS AEJM01000025.1 40678 42201 1 + 1524 L,D-transpeptidase YcbB CBSS-228400.4.peg.1623
fig|6666666.229926.peg.1404 CDS AEJM01000025.1 42255 42815 3 + 561 FIG001587: exported protein CBSS-228400.4.peg.1623
fig|6666666.229926.peg.1405 CDS AEJM01000025.1 42769 42894 1 + 126 hypothetical protein - none -
fig|6666666.229926.peg.1406 CDS AEJM01000025.1 42891 43529 3 + 639 Hypothetical metal-binding enzyme, YcbL homolog CBSS-228400.4.peg.1623
fig|6666666.229926.peg.1407 CDS AEJM01000025.1 43757 43563 -2 - 195 hypothetical protein - none -
fig|6666666.229926.peg.1408 CDS AEJM01000025.1 43749 46556 3 + 2808 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) Dehydrogenase complexes;
TCA Cycle
fig|6666666.229926.peg.1409 CDS AEJM01000025.1 46684 47907 1 + 1224 Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61) Dehydrogenase complexes;
TCA Cycle
fig|6666666.229926.peg.1410 CDS AEJM01000025.1 48100 47984 -1 - 117 hypothetical protein - none -
fig|6666666.229926.peg.1411 CDS AEJM01000025.1 48114 49283 3 + 1170 Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) TCA Cycle
fig|6666666.229926.peg.1412 CDS AEJM01000025.1 49294 50166 1 + 873 Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) TCA Cycle
fig|6666666.229926.peg.1414 CDS AEJM01000025.1 52558 50336 -1 - 2223 Formate dehydrogenase H (EC 1.2.1.2) @ selenocysteine-containing Formate dehydrogenase
fig|6666666.229926.peg.1416 CDS AEJM01000025.1 53803 52733 -1 - 1071 cell filamentation protein Fic-related protein - none -
fig|6666666.229926.peg.1417 CDS AEJM01000025.1 54413 53991 -2 - 423 Coenzyme F420 hydrogenase maturation protease (EC 3.4.24.-) Hydrogenases
fig|6666666.229926.peg.1418 CDS AEJM01000025.1 54849 54442 -3 - 408 Formate hydrogenlyase transcriptional activator Formate hydrogenase
fig|6666666.229926.peg.1419 CDS AEJM01000026.1 268 780 1 + 513 Molybdopterin-guanine dinucleotide biosynthesis protein MobB Molybdenum cofactor biosynthesis;
ar-431-EC Molybdopterin-guanine dinucleotide biosynthesis
fig|6666666.229926.peg.1420 CDS AEJM01000026.1 875 1630 2 + 756 Short chain dehydrogenase - none -
fig|6666666.229926.peg.1421 CDS AEJM01000026.1 3170 1710 -2 - 1461 Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3) Dipeptidases (EC 3.4.13.-);
Recycling of Peptidoglycan Amino Acids
fig|6666666.229926.peg.1422 CDS AEJM01000026.1 3292 3756 1 + 465 Xanthine-guanine phosphoribosyltransferase (EC 2.4.2.22) Purine conversions
fig|6666666.229926.peg.1423 CDS AEJM01000026.1 3726 3860 3 + 135 hypothetical protein - none -
fig|6666666.229926.peg.1424 CDS AEJM01000026.1 6189 3847 -3 - 2343 Outer membrane protein Imp, required for envelope biogenesis / Organic solvent tolerance protein precursor Lipopolysaccharide assembly
fig|6666666.229926.peg.1425 CDS AEJM01000026.1 6815 6255 -2 - 561 DNA-3-methyladenine glycosylase (EC 3.2.2.20) CBSS-326442.4.peg.1852;
DNA Repair Base Excision
fig|6666666.229926.peg.1426 CDS AEJM01000026.1 7017 7622 3 + 606 probable integral membrane protein Cj0014c - none -
fig|6666666.229926.peg.1427 CDS AEJM01000026.1 8924 7674 -2 - 1251 Diaminopimelate decarboxylase (EC 4.1.1.20) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229926.peg.1428 CDS AEJM01000026.1 9061 8942 -1 - 120 hypothetical protein - none -
fig|6666666.229926.peg.1429 CDS AEJM01000026.1 9184 9492 1 + 309 Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly Biogenesis of cytochrome c oxidases
fig|6666666.229926.peg.1430 CDS AEJM01000026.1 9492 11381 3 + 1890 ATP-dependent DNA helicase RecQ DNA repair, bacterial RecFOR pathway
fig|6666666.229926.peg.1431 CDS AEJM01000026.1 11478 13898 3 + 2421 DNA gyrase subunit B (EC 5.99.1.3) Cell Division Subsystem including YidCD;
DNA gyrase subunits;
DNA replication cluster 1;
DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.229926.peg.1432 CDS AEJM01000026.1 14869 13955 -1 - 915 Pantothenate kinase (EC 2.7.1.33) Coenzyme A Biosynthesis
fig|6666666.229926.peg.1433 CDS AEJM01000027.1 851 33 -2 - 819 Peptide transport system ATP-binding protein SapF - none -
fig|6666666.229926.peg.1434 CDS AEJM01000028.1 2159 657 -2 - 1503 Sodium-dependent transporter - none -
fig|6666666.229926.peg.1435 CDS AEJM01000028.1 2440 2312 -1 - 129 hypothetical protein - none -
fig|6666666.229926.peg.1436 CDS AEJM01000028.1 2703 2852 3 + 150 tRNA pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229926.peg.1437 CDS AEJM01000028.1 2854 3570 1 + 717 Mg(2+) transport ATPase protein C Magnesium transport
fig|6666666.229926.peg.1438 CDS AEJM01000028.1 4511 3609 -2 - 903 hypothetical protein - none -
fig|6666666.229926.peg.1439 CDS AEJM01000028.1 6416 4557 -2 - 1860 Selenocysteine-specific translation elongation factor Selenocysteine metabolism
fig|6666666.229926.peg.1440 CDS AEJM01000028.1 7807 6413 -1 - 1395 L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1) Selenocysteine metabolism
fig|6666666.229926.peg.1441 CDS AEJM01000028.1 7926 7810 -3 - 117 hypothetical protein - none -
fig|6666666.229926.peg.1442 CDS AEJM01000028.1 7958 9673 2 + 1716 Prolyl-tRNA synthetase (EC 6.1.1.15), bacterial type tRNA aminoacylation, Pro
fig|6666666.229926.peg.1443 CDS AEJM01000028.1 9771 9634 -3 - 138 hypothetical protein - none -
fig|6666666.229926.peg.1444 CDS AEJM01000028.1 9740 10069 2 + 330 Ethidium bromide-methyl viologen resistance protein EmrE - none -
fig|6666666.229926.peg.1445 CDS AEJM01000028.1 10109 10363 2 + 255 YgfY COG2938 - none -
fig|6666666.229926.peg.1446 CDS AEJM01000028.1 10496 11071 2 + 576 RNA polymerase sigma factor RpoE Transcription initiation, bacterial sigma factors
fig|6666666.229926.peg.1447 CDS AEJM01000028.1 11110 11694 1 + 585 Sigma factor RpoE negative regulatory protein RseA Periplasmic Stress Response;
Transcription initiation, bacterial sigma factors
fig|6666666.229926.peg.1448 CDS AEJM01000028.1 11776 12732 1 + 957 Sigma factor RpoE negative regulatory protein RseB precursor Periplasmic Stress Response;
Transcription initiation, bacterial sigma factors
fig|6666666.229926.peg.1449 CDS AEJM01000029.1 98 817 2 + 720 Putative exported protein precursor - none -
fig|6666666.229926.peg.1450 CDS AEJM01000029.1 837 1190 3 + 354 Putative exported protein precursor - none -
fig|6666666.229926.peg.1451 CDS AEJM01000029.1 2730 1360 -3 - 1371 N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23) / Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157) Peptidoglycan Biosynthesis;
Peptidoglycan Biosynthesis;
Sialic Acid Metabolism;
Sialic Acid Metabolism;
Transcription repair cluster;
Transcription repair cluster;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229926.peg.1452 CDS AEJM01000029.1 2816 3946 2 + 1131 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) Recycling of Peptidoglycan Amino Sugars
fig|6666666.229926.peg.1453 CDS AEJM01000029.1 3943 4857 1 + 915 N-acetylmuramic acid 6-phosphate etherase - none -
fig|6666666.229926.peg.1454 CDS AEJM01000029.1 5002 6366 1 + 1365 lipoprotein, putative - none -
fig|6666666.229926.peg.1455 CDS AEJM01000029.1 6492 7787 3 + 1296 Glycine/D-amino acid oxidases (deaminating) - none -
fig|6666666.229926.peg.1456 CDS AEJM01000029.1 7913 8689 2 + 777 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain - none -
fig|6666666.229926.peg.1457 CDS AEJM01000029.1 8673 9395 3 + 723 ABC-type amino acid transport system, permease component - none -
fig|6666666.229926.peg.1458 CDS AEJM01000029.1 9405 10172 3 + 768 ABC-type polar amino acid transport system, ATPase component CBSS-326442.4.peg.1852
fig|6666666.229926.peg.1459 CDS AEJM01000029.1 10468 10181 -1 - 288 tRNA 5-methylaminomethyl-2-thiouridine synthase TusB Sulfite reduction-associated complex DsrMKJOP and co-clustering genes;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.229926.peg.1460 CDS AEJM01000029.1 10833 10471 -3 - 363 tRNA 5-methylaminomethyl-2-thiouridine synthase TusC CBSS-326442.4.peg.1852;
Sulfite reduction-associated complex DsrMKJOP and co-clustering genes;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.229926.peg.1461 CDS AEJM01000029.1 11207 10830 -2 - 378 tRNA 5-methylaminomethyl-2-thiouridine synthase TusD CBSS-326442.4.peg.1852;
Sulfite reduction-associated complex DsrMKJOP and co-clustering genes;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.229926.peg.1462 CDS AEJM01000029.1 11879 11211 -2 - 669 YheO-like PAS domain - none -
fig|6666666.229926.peg.1463 CDS AEJM01000029.1 12684 11959 -3 - 726 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase;
Potassium homeostasis
fig|6666666.229926.peg.1464 CDS AEJM01000029.1 12773 12994 2 + 222 Protein SlyX - none -
fig|6666666.229926.peg.1465 CDS AEJM01000029.1 13782 13054 -3 - 729 Peroxiredoxin family protein/glutaredoxin - none -
fig|6666666.229926.peg.1466 CDS AEJM01000029.1 13941 14840 3 + 900 Hydrogen peroxide-inducible genes activator LysR-family proteins in Escherichia coli;
LysR-family proteins in Salmonella enterica Typhimurium;
Oxidative stress;
Thioredoxin-disulfide reductase
fig|6666666.229926.peg.1467 CDS AEJM01000029.1 14852 15472 2 + 621 Unsaturated fatty acid biosythesis repressor FabR, TetR family - none -
fig|6666666.229926.peg.1468 CDS AEJM01000029.1 17217 15583 -3 - 1635 ABC transporter ATP-binding protein - none -
fig|6666666.229926.peg.1469 CDS AEJM01000029.1 18982 17234 -1 - 1749 Transport ATP-binding protein CydD Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229926.peg.1470 CDS AEJM01000029.1 20474 19152 -2 - 1323 Anaerobic C4-dicarboxylate membrane transporter DcuA - none -
fig|6666666.229926.peg.1471 CDS AEJM01000029.1 20819 21241 2 + 423 FIG136845: Rhodanese-related sulfurtransferase Glutaredoxin 3 containing cluster
fig|6666666.229926.peg.1472 CDS AEJM01000029.1 21257 21769 2 + 513 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) Glutaredoxin 3 containing cluster
fig|6666666.229926.peg.1473 CDS AEJM01000029.1 21857 22870 2 + 1014 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) Glutaredoxin 3 containing cluster;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229926.peg.1474 CDS AEJM01000029.1 22873 23670 1 + 798 Serine acetyltransferase (EC 2.3.1.30) Cysteine Biosynthesis;
Methionine Biosynthesis
fig|6666666.229926.peg.1475 CDS AEJM01000029.1 23864 23733 -2 - 132 hypothetical protein - none -
fig|6666666.229926.peg.1476 CDS AEJM01000029.1 23885 24289 2 + 405 hypothetical protein - none -
fig|6666666.229926.peg.1477 CDS AEJM01000029.1 25244 24327 -2 - 918 Fructose-1,6-bisphosphatase, GlpX type (EC 3.1.3.11) Glycolysis and Gluconeogenesis
fig|6666666.229926.peg.1478 CDS AEJM01000029.1 25401 25658 3 + 258 FIG074102: hypothetical protein - none -
fig|6666666.229926.peg.1479 CDS AEJM01000029.1 25716 26159 3 + 444 Flavoprotein MioC Flavodoxin
fig|6666666.229926.peg.1480 CDS AEJM01000029.1 26583 28475 3 + 1893 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA Cell Division Subsystem including YidCD;
RNA modification and chromosome partitioning cluster;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229926.peg.1481 CDS AEJM01000029.1 29561 28704 -2 - 858 NADPH:quinone oxidoreductase 2 NADPH:quinone oxidoreductase 2
fig|6666666.229926.peg.1482 CDS AEJM01000029.1 29716 30078 1 + 363 Redox-sensing transcriptional regulator QorR NADPH:quinone oxidoreductase 2
fig|6666666.229926.peg.1483 CDS AEJM01000029.1 30137 30754 2 + 618 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB Cell Division Subsystem including YidCD;
RNA methylation;
RNA modification and chromosome partitioning cluster
fig|6666666.229926.peg.1484 CDS AEJM01000029.1 30868 31245 1 + 378 FIG048548: ATP synthase protein I2 - none -
fig|6666666.229926.peg.1485 CDS AEJM01000029.1 31270 32058 1 + 789 ATP synthase F0 sector subunit a - none -
fig|6666666.229926.peg.1486 CDS AEJM01000029.1 32112 32366 3 + 255 ATP synthase F0 sector subunit c (EC 3.6.3.14) - none -
fig|6666666.229926.peg.1487 CDS AEJM01000029.1 32416 32886 1 + 471 ATP synthase F0 sector subunit b - none -
fig|6666666.229926.peg.1488 CDS AEJM01000029.1 32900 33448 2 + 549 ATP synthase delta chain (EC 3.6.3.14) - none -
fig|6666666.229926.peg.1489 CDS AEJM01000029.1 33461 35002 2 + 1542 ATP synthase alpha chain (EC 3.6.3.14) - none -
fig|6666666.229926.peg.1490 CDS AEJM01000029.1 35018 35887 2 + 870 ATP synthase gamma chain (EC 3.6.3.14) - none -
fig|6666666.229926.peg.1491 CDS AEJM01000029.1 35904 37277 3 + 1374 ATP synthase beta chain (EC 3.6.3.14) - none -
fig|6666666.229926.peg.1492 CDS AEJM01000029.1 37319 37747 2 + 429 ATP synthase epsilon chain (EC 3.6.3.14) - none -
fig|6666666.229926.peg.1493 CDS AEJM01000029.1 38861 37815 -2 - 1047 ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1) Polyamine Metabolism
fig|6666666.229926.peg.1494 CDS AEJM01000029.1 38866 39018 1 + 153 hypothetical protein - none -
fig|6666666.229926.peg.1495 CDS AEJM01000029.1 39166 39675 1 + 510 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229926.peg.1496 CDS AEJM01000029.1 39679 41622 1 + 1944 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229926.peg.1497 CDS AEJM01000029.1 41659 42168 1 + 510 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229926.peg.1498 CDS AEJM01000029.1 42337 43509 1 + 1173 Type I restriction-modification system, specificity subunit S (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229926.peg.1499 CDS AEJM01000029.1 43611 44519 3 + 909 Type I restriction-modification system, DNA-methyltransferase subunit M (EC 2.1.1.72) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229926.peg.1500 CDS AEJM01000029.1 44521 45012 1 + 492 Type I restriction-modification system, DNA-methyltransferase subunit M (EC 2.1.1.72) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229926.peg.1501 CDS AEJM01000029.1 44993 45211 2 + 219 Type I restriction-modification system, DNA-methyltransferase subunit M (EC 2.1.1.72) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229926.peg.1502 CDS AEJM01000029.1 46228 45392 -1 - 837 PTS system, mannose-specific IID component - none -
fig|6666666.229926.peg.1503 CDS AEJM01000029.1 47046 46243 -3 - 804 PTS system, mannose-specific IIC component - none -
fig|6666666.229926.peg.1504 CDS AEJM01000029.1 48056 47058 -2 - 999 PTS system, mannose-specific IIA component / PTS system, mannose-specific IIB component (EC 2.7.1.69) Mannose Metabolism;
Sialic Acid Metabolism
fig|6666666.229926.peg.1505 CDS AEJM01000029.1 48458 48336 -2 - 123 hypothetical protein - none -
fig|6666666.229926.peg.1506 CDS AEJM01000031.1 192 61 -3 - 132 hypothetical protein - none -
fig|6666666.229926.peg.1507 CDS AEJM01000032.1 696 184 -3 - 513 Protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-) Heme and Siroheme Biosynthesis
fig|6666666.229926.peg.1508 CDS AEJM01000032.1 2159 696 -2 - 1464 Potassium uptake protein TrkH Hyperosmotic potassium uptake;
Potassium homeostasis;
Potassium homeostasis
fig|6666666.229926.peg.1509 CDS AEJM01000032.1 2312 2178 -2 - 135 hypothetical protein - none -
fig|6666666.229926.peg.1510 CDS AEJM01000032.1 2537 2424 -2 - 114 hypothetical protein - none -
fig|6666666.229926.peg.1511 CDS AEJM01000032.1 2628 2873 3 + 246 tRNA 5-methylaminomethyl-2-thiouridine synthase TusA mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.229926.peg.1512 CDS AEJM01000032.1 3191 4462 2 + 1272 Nicotinamide-nucleotide adenylyltransferase, NadR family (EC 2.7.7.1) / Ribosylnicotinamide kinase (EC 2.7.1.22) NAD and NADP cofactor biosynthesis global;
NAD and NADP cofactor biosynthesis global
fig|6666666.229926.peg.1513 CDS AEJM01000032.1 4478 5161 2 + 684 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases - none -
fig|6666666.229926.peg.1514 CDS AEJM01000032.1 5288 6517 2 + 1230 Tyrosine-specific transport protein - none -
fig|6666666.229926.peg.1515 CDS AEJM01000035.1 1176 34 -3 - 1143 Translation elongation factor Tu Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Translation elongation factors bacterial;
Universal GTPases
fig|6666666.229926.peg.1516 CDS AEJM01000036.1 773 1591 2 + 819 HMP-PP hydrolase (pyridoxal phosphatase) Cof, detected in genetic screen for thiamin metabolic genes (PMID:15292217) - none -
fig|6666666.229926.peg.1517 CDS AEJM01000036.1 1594 1974 1 + 381 CrcB protein - none -
fig|6666666.229926.peg.1518 CDS AEJM01000036.1 2875 1952 -1 - 924 Lysophospholipase L2 (EC 3.1.1.5) Triacylglycerol metabolism
fig|6666666.229926.peg.1519 CDS AEJM01000036.1 3911 2868 -2 - 1044 O-antigen ligase LOS core oligosaccharide biosynthesis
fig|6666666.229926.peg.1520 CDS AEJM01000036.1 4048 4209 1 + 162 hypothetical protein - none -
fig|6666666.229926.peg.1521 CDS AEJM01000036.1 5301 4222 -3 - 1080 Fructose-bisphosphate aldolase class II (EC 4.1.2.13) Glycolysis and Gluconeogenesis
fig|6666666.229926.peg.1522 CDS AEJM01000036.1 6530 5367 -2 - 1164 Phosphoglycerate kinase (EC 2.7.2.3) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis
fig|6666666.229926.peg.1523 CDS AEJM01000036.1 7342 6647 -1 - 696 Probable ribonuclease HI0526 precursor - none -
fig|6666666.229926.peg.1524 CDS AEJM01000036.1 7449 7670 3 + 222 4Fe-4S ferredoxin, iron-sulfur binding - none -
fig|6666666.229926.peg.1525 CDS AEJM01000036.1 8812 7733 -1 - 1080 hypothetical tRNA/rRNA methyltransferase yfiF [EC:2.1.1.-] RNA methylation;
tRNA modification Bacteria
fig|6666666.229926.peg.1526 CDS AEJM01000036.1 8998 10365 1 + 1368 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229926.peg.1527 CDS AEJM01000036.1 14734 10466 -1 - 4269 DNA-directed RNA polymerase beta@1 subunit (EC 2.7.7.6) Mycobacterium virulence operon involved in DNA transcription;
RNA polymerase bacterial
fig|6666666.229926.peg.1528 CDS AEJM01000036.1 18865 14837 -1 - 4029 DNA-directed RNA polymerase beta subunit (EC 2.7.7.6) Mycobacterium virulence operon involved in DNA transcription;
RNA polymerase bacterial
fig|6666666.229926.peg.1529 CDS AEJM01000036.1 19507 19136 -1 - 372 LSU ribosomal protein L7/L12 (P1/P2) LSU ribosomal proteins cluster;
Ribosome LSU bacterial
fig|6666666.229926.peg.1530 CDS AEJM01000036.1 20050 19559 -1 - 492 LSU ribosomal protein L10p (P0) LSU ribosomal proteins cluster;
Ribosome LSU bacterial
fig|6666666.229926.peg.1531 CDS AEJM01000036.1 21095 20406 -2 - 690 LSU ribosomal protein L1p (L10Ae) LSU ribosomal proteins cluster;
Ribosome LSU bacterial
fig|6666666.229926.peg.1532 CDS AEJM01000036.1 21528 21100 -3 - 429 LSU ribosomal protein L11p (L12e) LSU ribosomal proteins cluster;
Ribosome LSU bacterial
fig|6666666.229926.peg.1533 CDS AEJM01000036.1 22236 21685 -3 - 552 Transcription antitermination protein NusG LSU ribosomal proteins cluster;
Transcription factors bacterial
fig|6666666.229926.peg.1534 CDS AEJM01000036.1 22648 22238 -1 - 411 Preprotein translocase subunit SecE (TC 3.A.5.1.1) LSU ribosomal proteins cluster
fig|6666666.229926.peg.1535 CDS AEJM01000036.1 23805 23101 -3 - 705 hypothetical protein - none -
fig|6666666.229926.peg.1536 CDS AEJM01000036.1 24282 23980 -3 - 303 hypothetical protein - none -
fig|6666666.229926.peg.1537 CDS AEJM01000036.1 25100 24543 -2 - 558 NAD(P)H oxidoreductase YRKL (EC 1.6.99.-) @ Putative NADPH-quinone reductase (modulator of drug activity B) @ Flavodoxin 2 Flavodoxin;
Flavodoxin
fig|6666666.229926.peg.1538 CDS AEJM01000036.1 25210 26127 1 + 918 LysR family regulatory protein CidR Murein hydrolase regulation and cell death
fig|6666666.229926.peg.1539 CDS AEJM01000036.1 26567 26289 -2 - 279 hypothetical protein - none -
fig|6666666.229926.peg.1540 CDS AEJM01000036.1 28253 26589 -2 - 1665 PTS system, fructose-specific IIB component (EC 2.7.1.69) / PTS system, fructose-specific IIC component (EC 2.7.1.69) Fructose utilization;
Fructose utilization
fig|6666666.229926.peg.1541 CDS AEJM01000036.1 29199 28258 -3 - 942 1-phosphofructokinase (EC 2.7.1.56) Fructose utilization
fig|6666666.229926.peg.1542 CDS AEJM01000036.1 30731 29202 -2 - 1530 Fructose-specific phosphocarrier protein HPr (EC 2.7.1.69) / PTS system, fructose-specific IIA component (EC 2.7.1.69) Fructose utilization;
Fructose utilization
fig|6666666.229926.peg.1543 CDS AEJM01000036.1 31381 30842 -1 - 540 ATPases involved in chromosome partitioning - none -
fig|6666666.229926.peg.1544 CDS AEJM01000036.1 32064 31480 -3 - 585 Molybdopterin-guanine dinucleotide biosynthesis protein MobA Molybdenum cofactor biosynthesis;
ar-431-EC Molybdopterin-guanine dinucleotide biosynthesis
fig|6666666.229926.peg.1545 CDS AEJM01000036.1 32148 32414 3 + 267 Protein yihD - none -
fig|6666666.229926.peg.1546 CDS AEJM01000036.1 32433 33050 3 + 618 Periplasmic thiol:disulfide interchange protein DsbA Biogenesis of c-type cytochromes;
Periplasmic disulfide interchange
fig|6666666.229926.peg.1547 CDS AEJM01000036.1 33110 33439 2 + 330 Protein yifE - none -
fig|6666666.229926.peg.1548 CDS AEJM01000036.1 33509 34606 2 + 1098 tRNA (Uracil54-C5-)-methyltransferase (EC 2.1.1.35) - none -
fig|6666666.229926.peg.1549 CDS AEJM01000036.1 34608 35366 3 + 759 rRNA small subunit methyltransferase J - none -
fig|6666666.229926.peg.1550 CDS AEJM01000036.1 35458 36885 1 + 1428 hypothetical protein - none -
fig|6666666.229926.peg.1551 CDS AEJM01000036.1 37114 39714 1 + 2601 DNA mismatch repair protein MutS DNA repair, bacterial MutL-MutS system;
DNA repair system including RecA, MutS and a hypothetical protein
fig|6666666.229926.peg.1552 CDS AEJM01000036.1 40737 39919 -3 - 819 HMP-PP hydrolase (pyridoxal phosphatase) Cof, detected in genetic screen for thiamin metabolic genes (PMID:15292217) - none -
fig|6666666.229926.peg.1553 CDS AEJM01000036.1 42590 40935 -2 - 1656 Lysophospholipase (EC 3.1.1.5) Triacylglycerol metabolism
fig|6666666.229926.peg.1554 CDS AEJM01000036.1 43471 42779 -1 - 693 Metal-dependent hydrolase - none -
fig|6666666.229926.peg.1555 CDS AEJM01000036.1 44829 43489 -3 - 1341 FIG00782214: hypothetical protein - none -
fig|6666666.229926.peg.1556 CDS AEJM01000036.1 46206 44854 -3 - 1353 Low-affinity gluconate/H+ symporter GntU D-gluconate and ketogluconates metabolism
fig|6666666.229926.peg.1557 CDS AEJM01000036.1 47071 46295 -1 - 777 Hydroxypyruvate isomerase (EC 5.3.1.22) Glycerate metabolism
fig|6666666.229926.peg.1558 CDS AEJM01000036.1 47706 47074 -3 - 633 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases - none -
fig|6666666.229926.peg.1559 CDS AEJM01000036.1 48947 47703 -2 - 1245 FIG00641944: hypothetical protein - none -
fig|6666666.229926.peg.1560 CDS AEJM01000036.1 49771 48950 -1 - 822 D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) - none -
fig|6666666.229926.peg.1561 CDS AEJM01000036.1 50047 50805 1 + 759 Transcriptional regulators of sugar metabolism - none -
fig|6666666.229926.peg.1562 CDS AEJM01000036.1 50882 51220 2 + 339 Nitrogen regulatory protein P-II Ammonia assimilation
fig|6666666.229926.peg.1563 CDS AEJM01000036.1 51359 52402 2 + 1044 FIG004453: protein YceG like CBSS-323097.3.peg.2594;
Cluster containing Alanyl-tRNA synthetase;
tRNA modification Bacteria
fig|6666666.229926.peg.1564 CDS AEJM01000036.1 52404 53036 3 + 633 Thymidylate kinase (EC 2.7.4.9) pyrimidine conversions
fig|6666666.229926.peg.1565 CDS AEJM01000036.1 53033 54016 2 + 984 DNA polymerase III delta prime subunit (EC 2.7.7.7) - none -
fig|6666666.229926.peg.1566 CDS AEJM01000036.1 54020 54802 2 + 783 Putative deoxyribonuclease YcfH YcfH
fig|6666666.229926.peg.1567 CDS AEJM01000036.1 54834 55358 3 + 525 FIG00696143: hypothetical protein - none -
fig|6666666.229926.peg.1568 CDS AEJM01000036.1 55495 55355 -1 - 141 hypothetical protein - none -
fig|6666666.229926.peg.1569 CDS AEJM01000036.1 55449 56759 3 + 1311 Magnesium and cobalt efflux protein CorC CBSS-56780.10.peg.1536;
Copper homeostasis: copper tolerance;
Glycyl-tRNA synthetase containing cluster;
Magnesium transport;
tRNA-methylthiotransferase containing cluster
fig|6666666.229926.peg.1570 CDS AEJM01000036.1 56806 56919 1 + 114 hypothetical protein - none -
fig|6666666.229926.peg.1571 CDS AEJM01000036.1 57365 56880 -2 - 486 Dihydrofolate reductase (EC 1.5.1.3) 5-FCL-like protein;
Folate Biosynthesis
fig|6666666.229926.peg.1572 CDS AEJM01000036.1 57869 57405 -2 - 465 FIG001826: putative inner membrane protein CBSS-316275.9.peg.382
fig|6666666.229926.peg.1573 CDS AEJM01000036.1 58656 57871 -3 - 786 FIG023911: putative membrane protein CBSS-316275.9.peg.382
fig|6666666.229926.peg.1574 CDS AEJM01000036.1 58808 59914 2 + 1107 Glutamate 5-kinase (EC 2.7.2.11) Proline Synthesis
fig|6666666.229926.peg.1575 CDS AEJM01000036.1 60609 59977 -3 - 633 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase
fig|6666666.229926.peg.1576 CDS AEJM01000036.1 61504 60635 -1 - 870 Phosphatidylserine decarboxylase (EC 4.1.1.65) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229926.peg.1577 CDS AEJM01000036.1 61748 62401 2 + 654 Putative lipase in cluster with Phosphatidate cytidylyltransferase CBSS-316407.3.peg.1371;
Triacylglycerol metabolism
fig|6666666.229926.peg.1578 CDS AEJM01000036.1 62405 63487 2 + 1083 Putative lipase in cluster with Phosphatidate cytidylyltransferase CBSS-316407.3.peg.1371;
Triacylglycerol metabolism
fig|6666666.229926.peg.1579 CDS AEJM01000036.1 63489 64805 3 + 1317 Ser/Thr and Tyr protein phosphatase (dual specificity) CBSS-316407.3.peg.1371
fig|6666666.229926.peg.1580 CDS AEJM01000036.1 64892 65257 2 + 366 hypothetical protein - none -
fig|6666666.229926.peg.1581 CDS AEJM01000036.1 65541 65410 -3 - 132 hypothetical protein - none -
fig|6666666.229926.peg.1582 CDS AEJM01000036.1 65590 66204 1 + 615 Biotin synthesis protein BioC Biotin biosynthesis Experimental
fig|6666666.229926.peg.1583 CDS AEJM01000036.1 66304 66828 1 + 525 COG1399 protein, clustered with ribosomal protein L32p - none -
fig|6666666.229926.peg.1584 CDS AEJM01000036.1 66845 67015 2 + 171 LSU ribosomal protein L32p Ribosome LSU bacterial
fig|6666666.229926.peg.1585 CDS AEJM01000036.1 67042 68061 1 + 1020 Phosphate:acyl-ACP acyltransferase PlsX Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229926.peg.1586 CDS AEJM01000036.1 68108 69058 2 + 951 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) Fatty Acid Biosynthesis FASII
fig|6666666.229926.peg.1587 CDS AEJM01000036.1 69163 70101 1 + 939 Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39) Fatty Acid Biosynthesis FASII
fig|6666666.229926.peg.1588 CDS AEJM01000036.1 70126 70854 1 + 729 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) Fatty Acid Biosynthesis FASII
fig|6666666.229926.peg.1589 CDS AEJM01000036.1 71127 71357 3 + 231 Acyl carrier protein Fatty Acid Biosynthesis FASII;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229926.peg.1590 CDS AEJM01000036.1 71509 71393 -1 - 117 hypothetical protein - none -
fig|6666666.229926.peg.1591 CDS AEJM01000036.1 71890 72816 1 + 927 Major facilitator superfamily (MFS) transport protein - none -
fig|6666666.229926.peg.1592 CDS AEJM01000036.1 74177 72939 -2 - 1239 Transcription termination factor Rho Transcription factors bacterial
fig|6666666.229926.peg.1593 CDS AEJM01000036.1 74501 75757 2 + 1257 ATP-dependent RNA helicase RhlB - none -
fig|6666666.229926.peg.1594 CDS AEJM01000036.1 75824 76132 2 + 309 Iojap protein - none -
fig|6666666.229926.peg.1595 CDS AEJM01000036.1 76123 76659 1 + 537 LSU m3Psi1915 methyltransferase RlmH RNA methylation;
Ribosome biogenesis bacterial;
tRNA modification Bacteria
fig|6666666.229926.peg.1596 CDS AEJM01000036.1 76672 78633 1 + 1962 Penicillin-binding protein 2 (PBP-2) 16S rRNA modification within P site of ribosome;
CBSS-83331.1.peg.3039;
Peptidoglycan Biosynthesis
fig|6666666.229926.peg.1597 CDS AEJM01000036.1 78620 79741 2 + 1122 Rod shape-determining protein RodA Bacterial Cytoskeleton;
Peptidoglycan Biosynthesis
fig|6666666.229926.peg.1598 CDS AEJM01000036.1 79790 80647 2 + 858 Rare lipoprotein A precursor Peptidoglycan Biosynthesis
fig|6666666.229926.peg.1599 CDS AEJM01000036.1 80678 81868 2 + 1191 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) Metallocarboxypeptidases (EC 3.4.17.-);
Murein Hydrolases;
Peptidoglycan Biosynthesis
fig|6666666.229926.peg.1600 CDS AEJM01000036.1 81942 82241 3 + 300 Proposed lipoate regulatory protein YbeD Lipoic acid metabolism;
Lipoic acid synthesis cluster
fig|6666666.229926.peg.1601 CDS AEJM01000036.1 82287 82925 3 + 639 Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase Lipoic acid metabolism;
Lipoic acid synthesis cluster
fig|6666666.229926.peg.1602 CDS AEJM01000036.1 82989 83951 3 + 963 Lipoate synthase Lipoic acid metabolism;
Lipoic acid synthesis cluster
fig|6666666.229926.peg.1603 CDS AEJM01000036.1 85509 84100 -3 - 1410 Cysteinyl-tRNA synthetase (EC 6.1.1.16) tRNA aminoacylation, Cys
fig|6666666.229926.peg.1604 CDS AEJM01000036.1 85579 86091 1 + 513 Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase;
Queuosine-Archaeosine Biosynthesis
fig|6666666.229926.peg.1605 CDS AEJM01000036.1 86182 86337 1 + 156 hypothetical protein - none -
fig|6666666.229926.peg.1606 CDS AEJM01000036.1 86330 86632 2 + 303 Phage protein - none -
fig|6666666.229926.peg.1607 CDS AEJM01000036.1 86619 87407 3 + 789 Putative deoxyribonuclease YjjV Deoxyribose and Deoxynucleoside Catabolism;
YcfH
fig|6666666.229926.peg.1608 CDS AEJM01000036.1 87901 87434 -1 - 468 Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) Ribonucleotide reduction
fig|6666666.229926.peg.1609 CDS AEJM01000036.1 87935 88060 2 + 126 hypothetical protein - none -
fig|6666666.229926.peg.1610 CDS AEJM01000036.1 88395 88270 -3 - 126 hypothetical protein - none -
fig|6666666.229926.peg.1611 CDS AEJM01000036.1 90777 88651 -3 - 2127 Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) Ribonucleotide reduction
fig|6666666.229926.peg.1612 CDS AEJM01000036.1 92163 91030 -3 - 1134 Autotransporter adhesin - none -
fig|6666666.229926.peg.1613 CDS AEJM01000036.1 96082 92228 -1 - 3855 Autotransporter adhesin - none -
fig|6666666.229926.peg.1614 CDS AEJM01000036.1 97254 97138 -3 - 117 hypothetical protein - none -
fig|6666666.229926.peg.1615 CDS AEJM01000036.1 99058 97271 -1 - 1788 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) - none -
fig|6666666.229926.peg.1616 CDS AEJM01000036.1 99291 99121 -3 - 171 hypothetical protein - none -
fig|6666666.229926.peg.1617 CDS AEJM01000036.1 99256 102732 1 + 3477 DNA polymerase III alpha subunit (EC 2.7.7.7) - none -
fig|6666666.229926.peg.1618 CDS AEJM01000036.1 102827 103072 2 + 246 hypothetical protein - none -
fig|6666666.229926.peg.1619 CDS AEJM01000036.1 103098 103271 3 + 174 hypothetical protein - none -
fig|6666666.229926.peg.1620 CDS AEJM01000036.1 103498 103617 1 + 120 Mobile element protein - none -
fig|6666666.229926.peg.1621 CDS AEJM01000036.1 104219 104076 -2 - 144 hypothetical protein - none -
fig|6666666.229926.peg.1622 CDS AEJM01000036.1 105666 104212 -3 - 1455 Catalase (EC 1.11.1.6) Oxidative stress;
Protection from Reactive Oxygen Species
fig|6666666.229926.peg.1623 CDS AEJM01000036.1 107280 105931 -3 - 1350 NADP-specific glutamate dehydrogenase (EC 1.4.1.4) Arginine and Ornithine Degradation;
Glutamate dehydrogenases;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Proline Synthesis
fig|6666666.229926.peg.1624 CDS AEJM01000036.1 108960 107587 -3 - 1374 Argininosuccinate lyase (EC 4.3.2.1) - none -
fig|6666666.229926.peg.1625 CDS AEJM01000036.1 109861 109073 -1 - 789 Mannosyltransferase OCH1 and related enzymes - none -
fig|6666666.229926.peg.1626 CDS AEJM01000036.1 110548 111993 1 + 1446 Glutamyl-tRNA synthetase (EC 6.1.1.17) Heme and Siroheme Biosynthesis;
tRNA aminoacylation, Glu and Gln
fig|6666666.229926.peg.1627 CDS AEJM01000036.1 112832 113533 2 + 702 Phage integrase - none -
fig|6666666.229926.peg.1628 CDS AEJM01000036.1 114048 114239 3 + 192 hypothetical protein - none -
fig|6666666.229926.peg.1629 CDS AEJM01000036.1 114357 114521 3 + 165 hypothetical protein - none -
fig|6666666.229926.peg.1630 CDS AEJM01000036.1 114674 114868 2 + 195 hypothetical protein - none -
fig|6666666.229926.peg.1631 CDS AEJM01000036.1 115008 115160 3 + 153 hypothetical protein - none -
fig|6666666.229926.peg.1632 CDS AEJM01000036.1 115150 115287 1 + 138 DNA primase (EC 2.7.7.-) CBSS-349161.4.peg.2417;
Macromolecular synthesis operon
fig|6666666.229926.peg.1633 CDS AEJM01000036.1 115245 115868 3 + 624 FIG00696993: hypothetical protein - none -
fig|6666666.229926.peg.1634 CDS AEJM01000036.1 116367 116576 3 + 210 Cold shock protein CspA Cold shock, CspA family of proteins
fig|6666666.229926.peg.1635 CDS AEJM01000036.1 117610 116678 -1 - 933 Ribokinase (EC 2.7.1.15) D-ribose utilization;
Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.229926.peg.1636 CDS AEJM01000036.1 117759 117562 -3 - 198 hypothetical protein - none -
fig|6666666.229926.peg.1637 CDS AEJM01000036.1 118039 117803 -1 - 237 Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229926.peg.1638 CDS AEJM01000036.1 118228 118115 -1 - 114 Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229926.peg.1639 CDS AEJM01000036.1 118290 118415 3 + 126 hypothetical protein - none -
fig|6666666.229926.peg.1640 CDS AEJM01000036.1 118446 119045 3 + 600 Adenosine (5@1)-pentaphospho-(5@1@1)-adenosine pyrophosphohydrolase (EC 3.6.1.-) CBSS-224911.1.peg.435;
CBSS-364106.7.peg.3204;
Nudix proteins (nucleoside triphosphate hydrolases);
Phosphoglycerate mutase protein family
fig|6666666.229926.peg.1641 CDS AEJM01000036.1 119048 119845 2 + 798 Protein of unknown function DUF81 - none -
fig|6666666.229926.peg.1642 CDS AEJM01000036.1 119854 120651 1 + 798 Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-) Lipoprotein Biosynthesis
fig|6666666.229926.peg.1643 CDS AEJM01000036.1 120648 121499 3 + 852 Thymidylate synthase (EC 2.1.1.45) Folate Biosynthesis;
pyrimidine conversions
fig|6666666.229926.peg.1644 CDS AEJM01000036.1 121861 122352 1 + 492 tRNA-specific adenosine-34 deaminase (EC 3.5.4.-) tRNA modification Bacteria;
tRNA processing;
tRNAmodification position 34
fig|6666666.229926.peg.1645 CDS AEJM01000036.1 122453 123013 2 + 561 Protein of unknown function DUF414 - none -
fig|6666666.229926.peg.1646 CDS AEJM01000036.1 123026 123460 2 + 435 Periplasmic/membrane protein associated with DUF414 - none -
fig|6666666.229926.peg.1647 CDS AEJM01000036.1 123480 124847 3 + 1368 Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22) Heme and Siroheme Biosynthesis
fig|6666666.229926.peg.1648 CDS AEJM01000036.1 125366 124923 -2 - 444 Histone acetyltransferase HPA2 and related acetyltransferases CBSS-216591.1.peg.168
fig|6666666.229926.peg.1649 CDS AEJM01000036.1 125540 126331 2 + 792 Triosephosphate isomerase (EC 5.3.1.1) CBSS-331978.3.peg.2915;
Glycolysis and Gluconeogenesis
fig|6666666.229926.peg.1650 CDS AEJM01000036.1 126444 127301 3 + 858 Naphthoate synthase (EC 4.1.3.36) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229926.peg.1651 CDS AEJM01000036.1 127341 127760 3 + 420 Nucleotidyltransferase substrate binding protein, HI0074 - none -
fig|6666666.229926.peg.1652 CDS AEJM01000036.1 127742 128071 2 + 330 Nucleotidyltransferase (EC 2.7.7.-) - none -
fig|6666666.229926.peg.1653 CDS AEJM01000036.1 128052 129053 3 + 1002 O-succinylbenzoate synthase (EC 4.2.1.113) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo;
Muconate lactonizing enzyme family
fig|6666666.229926.peg.1654 CDS AEJM01000036.1 129145 129621 1 + 477 3-dehydroquinate dehydratase II (EC 4.2.1.10) CBSS-221988.1.peg.1679;
Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate);
Quinate degradation
fig|6666666.229926.peg.1655 CDS AEJM01000036.1 129728 129576 -2 - 153 hypothetical protein - none -
fig|6666666.229926.peg.1656 CDS AEJM01000036.1 129745 130212 1 + 468 Biotin carboxyl carrier protein of acetyl-CoA carboxylase CBSS-221988.1.peg.1679;
Fatty Acid Biosynthesis FASII
fig|6666666.229926.peg.1657 CDS AEJM01000036.1 130255 131601 1 + 1347 Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14) CBSS-221988.1.peg.1679;
Fatty Acid Biosynthesis FASII
fig|6666666.229926.peg.1658 CDS AEJM01000036.1 131897 132661 2 + 765 Periplasmic protein TonB, links inner and outer membranes - none -
fig|6666666.229926.peg.1659 CDS AEJM01000036.1 132780 134168 3 + 1389 FOG: TPR repeat - none -
fig|6666666.229926.peg.1660 CDS AEJM01000036.1 134192 134464 2 + 273 FIG003021: Membrane protein CBSS-221988.1.peg.1679
fig|6666666.229926.peg.1661 CDS AEJM01000036.1 134461 135897 1 + 1437 Pantothenate:Na+ symporter (TC 2.A.21.1.1) CBSS-221988.1.peg.1679;
Coenzyme A Biosynthesis
fig|6666666.229926.peg.1662 CDS AEJM01000036.1 135916 136458 1 + 543 Protein involved in cell division - none -
fig|6666666.229926.peg.1663 CDS AEJM01000036.1 136471 137355 1 + 885 Ribosomal protein L11 methyltransferase (EC 2.1.1.-) Heat shock dnaK gene cluster extended;
Ribosome biogenesis bacterial
fig|6666666.229926.peg.1664 CDS AEJM01000036.1 137600 138640 2 + 1041 tRNA dihydrouridine synthase B (EC 1.-.-.-) tRNA modification Bacteria
fig|6666666.229926.peg.1665 CDS AEJM01000036.1 138645 138944 3 + 300 DNA-binding protein Fis DNA structural proteins, bacterial
fig|6666666.229926.peg.1666 CDS AEJM01000036.1 139324 139076 -1 - 249 Uncharacterized protein HI0966 - none -
fig|6666666.229926.peg.1667 CDS AEJM01000036.1 140102 139779 -2 - 324 Ribosome hibernation protein YfiA Ribosome activity modulation
fig|6666666.229926.peg.1668 CDS AEJM01000036.1 141704 140331 -2 - 1374 Sodium/glycine symporter GlyP - none -
fig|6666666.229926.peg.1669 CDS AEJM01000036.1 142372 142100 -1 - 273 FIG00904058: hypothetical protein - none -
fig|6666666.229926.peg.1670 CDS AEJM01000036.1 142584 142372 -3 - 213 FIG003276: zinc-binding protein - none -
fig|6666666.229926.peg.1671 CDS AEJM01000036.1 143197 142574 -1 - 624 Dephospho-CoA kinase (EC 2.7.1.24) Coenzyme A Biosynthesis
fig|6666666.229926.peg.1672 CDS AEJM01000036.1 143936 143247 -2 - 690 Leader peptidase (Prepilin peptidase) (EC 3.4.23.43) / N-methyltransferase (EC 2.1.1.-) Type IV pilus;
Type IV pilus
fig|6666666.229926.peg.1673 CDS AEJM01000036.1 145156 143933 -1 - 1224 Type II secretory pathway, component PulF / Type IV fimbrial assembly protein PilC Type IV pilus
fig|6666666.229926.peg.1674 CDS AEJM01000036.1 146558 145149 -2 - 1410 Type IV fimbrial assembly, ATPase PilB Type IV pilus
fig|6666666.229926.peg.1675 CDS AEJM01000036.1 147037 146585 -1 - 453 Type IV pilin PilA Type IV pilus
fig|6666666.229926.peg.1676 CDS AEJM01000036.1 147087 147713 3 + 627 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD Recycling of Peptidoglycan Amino Acids
fig|6666666.229926.peg.1677 CDS AEJM01000036.1 148658 148188 -2 - 471 Putative sugar isomerase involved in processing of exogenous sialic acid Sialic Acid Metabolism
fig|6666666.229926.peg.1678 CDS AEJM01000036.1 148850 151087 2 + 2238 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) Bacterial RNA-metabolizing Zn-dependent hydrolases;
Polyadenylation bacterial
fig|6666666.229926.peg.1679 CDS AEJM01000036.1 151166 152068 2 + 903 Lipoprotein nlpI precursor - none -
fig|6666666.229926.peg.1680 CDS AEJM01000036.1 152204 153982 2 + 1779 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) - none -
fig|6666666.229926.peg.1681 CDS AEJM01000036.1 154600 154061 -1 - 540 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) Cell division-ribosomal stress proteins cluster;
Folate biosynthesis cluster;
Purine conversions
fig|6666666.229926.peg.1682 CDS AEJM01000036.1 156200 154839 -2 - 1362 TldE protein, part of TldE/TldD proteolytic complex Putative TldE-TldD proteolytic complex
fig|6666666.229926.peg.1683 CDS AEJM01000036.1 156272 156850 2 + 579 FIG138315: Putative alpha helix protein Putative TldE-TldD proteolytic complex
fig|6666666.229926.peg.1684 CDS AEJM01000036.1 157538 157038 -2 - 501 Ribonuclease E inhibitor RraA RNA processing and degradation, bacterial
fig|6666666.229926.peg.1685 CDS AEJM01000036.1 158473 157589 -1 - 885 1,4-dihydroxy-2-naphthoate polyprenyltransferase (EC 2.5.1.74) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229926.peg.1686 CDS AEJM01000036.1 158579 158463 -2 - 117 hypothetical protein - none -
fig|6666666.229926.peg.1687 CDS AEJM01000036.1 158664 159380 3 + 717 COG1720: Uncharacterized conserved protein tRNA modification Bacteria
fig|6666666.229926.peg.1688 CDS AEJM01000036.1 161120 159381 -2 - 1740 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229926.peg.1689 CDS AEJM01000036.1 162480 161113 -3 - 1368 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229926.peg.1690 CDS AEJM01000036.1 162923 162480 -2 - 444 Type I restriction-modification system, specificity subunit S (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229926.peg.1691 CDS AEJM01000036.1 165027 163351 -3 - 1677 Type I restriction-modification system, DNA-methyltransferase subunit M (EC 2.1.1.72) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229926.peg.1692 CDS AEJM01000036.1 165550 165164 -1 - 387 Cu(I)-responsive transcriptional regulator Copper homeostasis
fig|6666666.229926.peg.1693 CDS AEJM01000036.1 165645 165857 3 + 213 Copper chaperone Copper homeostasis
fig|6666666.229926.peg.1694 CDS AEJM01000036.1 165946 168105 1 + 2160 Copper-translocating P-type ATPase (EC 3.6.3.4) Copper Transport System;
Copper homeostasis
fig|6666666.229926.peg.1695 CDS AEJM01000036.1 168178 169023 1 + 846 membrane protein, putative - none -
fig|6666666.229926.peg.1696 CDS AEJM01000036.1 169140 169490 3 + 351 Phage-related protein - none -
fig|6666666.229926.peg.1697 CDS AEJM01000036.1 169483 169806 1 + 324 FIG074102: hypothetical protein - none -
fig|6666666.229926.peg.1698 CDS AEJM01000036.1 171110 169866 -2 - 1245 ATP-dependent Clp protease ATP-binding subunit ClpX Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229926.peg.1699 CDS AEJM01000036.1 171686 171120 -2 - 567 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent;
cAMP signaling in bacteria
fig|6666666.229926.peg.1700 CDS AEJM01000036.1 171835 171981 1 + 147 hypothetical protein - none -
fig|6666666.229926.peg.1701 CDS AEJM01000036.1 173546 171945 -2 - 1602 Dca - none -
fig|6666666.229926.peg.1702 CDS AEJM01000036.1 173871 173755 -3 - 117 hypothetical protein - none -
fig|6666666.229926.peg.1703 CDS AEJM01000036.1 173866 176052 1 + 2187 Glutathione biosynthesis bifunctional protein gshF (EC 6.3.2.2)(EC 6.3.2.3) Glutathione: Biosynthesis and gamma-glutamyl cycle
fig|6666666.229926.peg.1704 CDS AEJM01000036.1 176186 178033 2 + 1848 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase
fig|6666666.229926.peg.1705 CDS AEJM01000036.1 178170 178796 3 + 627 Uracil phosphoribosyltransferase (EC 2.4.2.9) De Novo Pyrimidine Synthesis;
pyrimidine conversions
fig|6666666.229926.peg.1706 CDS AEJM01000036.1 178920 180173 3 + 1254 Uracil permease De Novo Pyrimidine Synthesis
fig|6666666.229926.peg.1707 CDS AEJM01000036.1 180180 180296 3 + 117 hypothetical protein - none -
fig|6666666.229926.peg.1708 CDS AEJM01000036.1 180293 180997 2 + 705 Chromosomal replication initiator protein DnaA Cell Division Subsystem including YidCD;
DNA replication cluster 1
fig|6666666.229926.peg.1709 CDS AEJM01000036.1 181455 181003 -3 - 453 Putative protein-S-isoprenylcysteine methyltransferase - none -
fig|6666666.229926.peg.1710 CDS AEJM01000036.1 182123 181509 -2 - 615 Mlr7403 protein CBSS-290633.1.peg.1906;
CBSS-498211.3.peg.1415
fig|6666666.229926.peg.1711 CDS AEJM01000036.1 183411 182134 -3 - 1278 Histidyl-tRNA synthetase (EC 6.1.1.21) CBSS-498211.3.peg.1415;
tRNA aminoacylation, His
fig|6666666.229926.peg.1712 CDS AEJM01000036.1 184536 183433 -3 - 1104 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (EC 1.17.7.1) CBSS-498211.3.peg.1415;
CBSS-83331.1.peg.3039;
Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.229926.peg.1713 CDS AEJM01000036.1 185597 184548 -2 - 1050 FIG021952: putative membrane protein CBSS-498211.3.peg.1415
fig|6666666.229926.peg.1714 CDS AEJM01000036.1 186291 185740 -3 - 552 Type IV pilus biogenesis protein PilF CBSS-498211.3.peg.1415
fig|6666666.229926.peg.1715 CDS AEJM01000036.1 187453 186314 -1 - 1140 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) CBSS-498211.3.peg.1415;
Conserved gene cluster associated with Met-tRNA formyltransferase;
RNA methylation
fig|6666666.229926.peg.1716 CDS AEJM01000036.1 187696 187574 -1 - 123 hypothetical protein - none -
fig|6666666.229926.peg.1717 CDS AEJM01000036.1 187747 188796 1 + 1050 L-asparaginase (EC 3.5.1.1) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229926.peg.1718 CDS AEJM01000036.1 190261 188897 -1 - 1365 L-serine dehydratase (EC 4.3.1.17) Glycine and Serine Utilization;
Pyruvate Alanine Serine Interconversions
fig|6666666.229926.peg.1719 CDS AEJM01000036.1 191595 190354 -3 - 1242 Serine transporter Glycine and Serine Utilization;
Pyruvate Alanine Serine Interconversions
fig|6666666.229926.peg.1720 CDS AEJM01000036.1 192252 191752 -3 - 501 Protein sprT - none -
fig|6666666.229926.peg.1721 CDS AEJM01000036.1 193477 192323 -1 - 1155 S-adenosylmethionine synthetase (EC 2.5.1.6) Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229926.peg.1722 CDS AEJM01000036.1 193954 193685 -1 - 270 SSU ribosomal protein S15p (S13e) Ribosome SSU bacterial
fig|6666666.229926.peg.1723 CDS AEJM01000036.1 194799 194050 -3 - 750 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase (EC 4.2.99.20) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229926.peg.1724 CDS AEJM01000036.1 196558 194852 -1 - 1707 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase (EC 2.2.1.9) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229926.peg.1725 CDS AEJM01000036.1 197853 196549 -3 - 1305 Menaquinone-specific isochorismate synthase (EC 5.4.4.2) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229926.peg.1726 CDS AEJM01000036.1 197970 199184 3 + 1215 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229926.peg.1727 CDS AEJM01000036.1 200041 199310 -1 - 732 Transcriptional regulator for fatty acid degradation FadR, GntR family - none -
fig|6666666.229926.peg.1728 CDS AEJM01000036.1 200237 201781 2 + 1545 Na+/H+ antiporter NhaB - none -
fig|6666666.229926.peg.1729 CDS AEJM01000036.1 201805 202344 1 + 540 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation Biogenesis of c-type cytochromes;
Periplasmic disulfide interchange
fig|6666666.229926.peg.1730 CDS AEJM01000036.1 202536 202390 -3 - 147 hypothetical protein - none -
fig|6666666.229926.peg.1731 CDS AEJM01000036.1 203978 202548 -2 - 1431 Transglycosylase, Slt family - none -
fig|6666666.229926.peg.1732 CDS AEJM01000036.1 204352 203999 -1 - 354 Dihydroneopterin aldolase (EC 4.1.2.25) Folate Biosynthesis;
Folate biosynthesis cluster
fig|6666666.229926.peg.1733 CDS AEJM01000036.1 204449 205045 2 + 597 Acyl-phosphate:glycerol-3-phosphate O-acyltransferase PlsY Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229926.peg.1734 CDS AEJM01000036.1 205578 205135 -3 - 444 FIG00904084: hypothetical protein - none -
fig|6666666.229926.peg.1735 CDS AEJM01000036.1 205718 206545 2 + 828 YpfJ protein, zinc metalloprotease superfamily Broadly distributed proteins not in subsystems
fig|6666666.229926.peg.1736 CDS AEJM01000036.1 207539 206748 -2 - 792 putative lipoprotein - none -
fig|6666666.229926.peg.1737 CDS AEJM01000036.1 208590 207946 -3 - 645 Manganese superoxide dismutase (EC 1.15.1.1) Oxidative stress;
Protection from Reactive Oxygen Species
fig|6666666.229926.peg.1738 CDS AEJM01000036.1 210539 208734 -2 - 1806 NADP-dependent malic enzyme (EC 1.1.1.40) Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229926.peg.1739 CDS AEJM01000036.1 210997 210536 -1 - 462 NADP-dependent malic enzyme (EC 1.1.1.40) Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229926.peg.1740 CDS AEJM01000036.1 211071 211916 3 + 846 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses
fig|6666666.229926.peg.1741 CDS AEJM01000036.1 211921 213114 1 + 1194 Bicyclomycin resistance protein - none -
fig|6666666.229926.peg.1742 CDS AEJM01000036.1 213286 213921 1 + 636 ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA Biogenesis of c-type cytochromes
fig|6666666.229926.peg.1743 CDS AEJM01000036.1 213926 214591 2 + 666 ABC transporter involved in cytochrome c biogenesis, CcmB subunit Biogenesis of c-type cytochromes
fig|6666666.229926.peg.1744 CDS AEJM01000036.1 214602 215339 3 + 738 Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE Biogenesis of c-type cytochromes
fig|6666666.229926.peg.1745 CDS AEJM01000036.1 215357 215563 2 + 207 Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE Biogenesis of c-type cytochromes
fig|6666666.229926.peg.1746 CDS AEJM01000036.1 215560 216078 1 + 519 Cytochrome c-type biogenesis protein CcmE, heme chaperone Biogenesis of c-type cytochromes
fig|6666666.229926.peg.1747 CDS AEJM01000036.1 216078 218036 3 + 1959 Cytochrome c heme lyase subunit CcmF Biogenesis of c-type cytochromes;
Copper homeostasis
fig|6666666.229926.peg.1748 CDS AEJM01000036.1 218065 218610 1 + 546 Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase Biogenesis of c-type cytochromes;
Periplasmic disulfide interchange
fig|6666666.229926.peg.1749 CDS AEJM01000036.1 218709 219158 3 + 450 Cytochrome c heme lyase subunit CcmL Biogenesis of c-type cytochromes
fig|6666666.229926.peg.1750 CDS AEJM01000036.1 219158 220081 2 + 924 Cytochrome c heme lyase subunit CcmH Biogenesis of c-type cytochromes;
Copper homeostasis
fig|6666666.229926.peg.1751 CDS AEJM01000036.1 220217 220840 2 + 624 Parvulin-like peptidyl-prolyl isomerase - none -
fig|6666666.229926.peg.1752 CDS AEJM01000036.1 220858 221148 1 + 291 hypothetical protein - none -
fig|6666666.229926.peg.1753 CDS AEJM01000036.1 221722 223245 1 + 1524 Cytochrome c552 precursor (EC 1.7.2.2) Soluble cytochromes and functionally related electron carriers
fig|6666666.229926.peg.1754 CDS AEJM01000036.1 223268 223972 2 + 705 Cytochrome c-type protein NrfB precursor - none -
fig|6666666.229926.peg.1755 CDS AEJM01000036.1 223969 224646 1 + 678 NrfC protein - none -
fig|6666666.229926.peg.1756 CDS AEJM01000036.1 224643 225608 3 + 966 NrfD protein - none -
fig|6666666.229926.peg.1757 CDS AEJM01000036.1 225732 225887 3 + 156 hypothetical protein - none -
fig|6666666.229926.peg.1758 CDS AEJM01000036.1 225994 226113 1 + 120 hypothetical protein - none -
fig|6666666.229926.peg.1759 CDS AEJM01000036.1 226197 226081 -3 - 117 hypothetical protein - none -
fig|6666666.229926.peg.1760 CDS AEJM01000036.1 226199 228109 2 + 1911 Cytochrome c-type heme lyase subunit nrfE, nitrite reductase complex assembly - none -
fig|6666666.229926.peg.1761 CDS AEJM01000036.1 228102 228632 3 + 531 Putative thiol:disulfide oxidoreductase, nitrite reductase complex assembly - none -
fig|6666666.229926.peg.1762 CDS AEJM01000036.1 228629 229714 2 + 1086 Cytochrome c-type heme lyase subunit nrfF, nitrite reductase complex assembly - none -
fig|6666666.229926.peg.1763 CDS AEJM01000036.1 229711 230910 1 + 1200 NAD(FAD)-utilizing dehydrogenases - none -
fig|6666666.229926.peg.1764 CDS AEJM01000036.1 231644 231069 -2 - 576 Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1) Oxidative stress;
Protection from Reactive Oxygen Species
fig|6666666.229926.peg.1765 CDS AEJM01000036.1 231832 232587 1 + 756 Ubiquinone/menaquinone biosynthesis methyltransferase UbiE (EC 2.1.1.-) Menaquinone and Phylloquinone Biosynthesis;
Ubiquinone Biosynthesis
fig|6666666.229926.peg.1766 CDS AEJM01000036.1 233674 232598 -1 - 1077 DNA recombination and repair protein RecF Cell Division Subsystem including YidCD;
DNA repair, bacterial RecFOR pathway;
DNA replication cluster 1
fig|6666666.229926.peg.1767 CDS AEJM01000036.1 234778 233678 -1 - 1101 DNA polymerase III beta subunit (EC 2.7.7.7) Cell Division Subsystem including YidCD;
DNA replication cluster 1
fig|6666666.229926.peg.1768 CDS AEJM01000036.1 236150 234789 -2 - 1362 Chromosomal replication initiator protein DnaA Cell Division Subsystem including YidCD;
DNA replication cluster 1
fig|6666666.229926.peg.1769 CDS AEJM01000036.1 236567 236701 2 + 135 LSU ribosomal protein L34p Cell Division Subsystem including YidCD;
RNA modification cluster;
Ribosome LSU bacterial
fig|6666666.229926.peg.1770 CDS AEJM01000036.1 236747 237082 2 + 336 Ribonuclease P protein component (EC 3.1.26.5) Cell Division Subsystem including YidCD;
RNA modification cluster;
tRNA processing
fig|6666666.229926.peg.1771 CDS AEJM01000036.1 237037 237300 1 + 264 Protein YidD Cell Division Subsystem including YidCD;
RNA modification cluster
fig|6666666.229926.peg.1772 CDS AEJM01000036.1 237342 238931 3 + 1590 Inner membrane protein translocase component YidC, long form CTP synthase (EC 6.3.4.2) cluster;
Cell Division Subsystem including YidCD;
RNA modification cluster
fig|6666666.229926.peg.1773 CDS AEJM01000036.1 239113 238976 -1 - 138 hypothetical protein - none -
fig|6666666.229926.peg.1774 CDS AEJM01000036.1 239132 240487 2 + 1356 GTPase and tRNA-U34 5-formylation enzyme TrmE Cell Division Subsystem including YidCD;
RNA modification and chromosome partitioning cluster;
RNA modification cluster;
Universal GTPases;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229926.peg.1775 CDS AEJM01000036.1 241509 240601 -3 - 909 GTP-binding protein Era Bacterial Cell Division;
CBSS-176299.4.peg.1292;
Glycyl-tRNA synthetase containing cluster;
Universal GTPases
fig|6666666.229926.peg.1776 CDS AEJM01000036.1 242186 241506 -2 - 681 Ribonuclease III (EC 3.1.26.3) CBSS-176299.4.peg.1292;
RNA processing and degradation, bacterial
fig|6666666.229926.peg.1777 CDS AEJM01000036.1 243215 242193 -2 - 1023 Signal peptidase I (EC 3.4.21.89) CBSS-176299.4.peg.1292;
Signal peptidase
fig|6666666.229926.peg.1778 CDS AEJM01000036.1 245022 243226 -3 - 1797 Translation elongation factor LepA Heat shock dnaK gene cluster extended;
Translation elongation factors bacterial;
Universal GTPases
fig|6666666.229926.peg.1779 CDS AEJM01000036.1 245085 245207 3 + 123 hypothetical protein - none -
fig|6666666.229926.peg.1780 CDS AEJM01000036.1 245574 245191 -3 - 384 Pyruvate formate-lyase (EC 2.3.1.54) Fermentations: Mixed acid
fig|6666666.229926.peg.1781 CDS AEJM01000036.1 245861 246529 2 + 669 Uracil-DNA glycosylase, family 1 DNA Repair Base Excision;
Uracil-DNA glycosylase
fig|6666666.229926.peg.1782 CDS AEJM01000036.1 246551 247330 2 + 780 UPF0246 protein YaaA - none -
fig|6666666.229926.peg.1783 CDS AEJM01000036.1 247332 247898 3 + 567 FIG00696199: hypothetical protein - none -
fig|6666666.229926.peg.1784 CDS AEJM01000036.1 247898 248818 2 + 921 Cobalt-zinc-cadmium resistance protein Cobalt-zinc-cadmium resistance
fig|6666666.229926.peg.1785 CDS AEJM01000036.1 248880 249845 3 + 966 6-phosphofructokinase (EC 2.7.1.11) D-Tagatose and Galactitol Utilization;
Glycolysis and Gluconeogenesis
fig|6666666.229926.peg.1786 CDS AEJM01000036.1 251125 249950 -1 - 1176 23S rRNA (Uracil-5-) -methyltransferase rumB (EC 2.1.1.-) RNA methylation
fig|6666666.229926.peg.1787 CDS AEJM01000036.1 252254 251127 -2 - 1128 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) Murein Hydrolases;
Recycling of Peptidoglycan Amino Sugars
fig|6666666.229926.peg.1788 CDS AEJM01000036.1 252609 252256 -3 - 354 Predicted periplasmic lipoprotein - none -
fig|6666666.229926.peg.1789 CDS AEJM01000036.1 252960 252610 -3 - 351 Bis(5@1-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17) pyrimidine conversions
fig|6666666.229926.peg.1790 CDS AEJM01000036.1 253274 254125 2 + 852 Formate efflux transporter (TC 2.A.44 family) Fermentations: Mixed acid
fig|6666666.229926.peg.1791 CDS AEJM01000036.1 254227 256539 1 + 2313 Pyruvate formate-lyase (EC 2.3.1.54) Fermentations: Mixed acid
fig|6666666.229926.peg.1792 CDS AEJM01000036.1 256633 256920 1 + 288 hypothetical protein - none -
fig|6666666.229926.peg.1793 CDS AEJM01000036.1 256982 257722 2 + 741 Pyruvate formate-lyase activating enzyme (EC 1.97.1.4) Fermentations: Mixed acid
fig|6666666.229926.peg.1794 CDS AEJM01000036.1 257864 258727 2 + 864 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229926.peg.1795 CDS AEJM01000036.1 260212 258800 -1 - 1413 Putative cell division protein precursor - none -
fig|6666666.229926.peg.1796 CDS AEJM01000036.1 260963 260220 -2 - 744 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229926.peg.1797 CDS AEJM01000036.1 261074 261805 2 + 732 UDP-2,3-diacylglucosamine diphosphatase (EC 3.6.1.54) KDO2-Lipid A biosynthesis;
Llipid A biosynthesis cluster
fig|6666666.229926.peg.1798 CDS AEJM01000036.1 261798 262304 3 + 507 Arabinose efflux permease - none -
fig|6666666.229926.peg.1799 CDS AEJM01000036.1 262367 263044 2 + 678 YheO-like PAS domain - none -
fig|6666666.229926.peg.1800 CDS AEJM01000036.1 264323 263109 -2 - 1215 Tyrosine-specific transport protein - none -
fig|6666666.229926.peg.1801 CDS AEJM01000036.1 265861 264485 -1 - 1377 Tryptophanase (EC 4.1.99.1) - none -
fig|6666666.229926.peg.1802 CDS AEJM01000036.1 266711 266190 -2 - 522 Translation elongation factor P Translation elongation factor P lysylation;
Translation elongation factors bacterial
fig|6666666.229926.peg.1803 CDS AEJM01000036.1 266789 267808 2 + 1020 Lysine 2,3-aminomutase (EC 5.4.3.2) - none -
fig|6666666.229926.peg.1804 CDS AEJM01000036.1 267979 269298 1 + 1320 Cell envelope opacity-associated protein A - none -
fig|6666666.229926.peg.1805 CDS AEJM01000036.1 269360 269734 2 + 375 opacity associated protein - none -
fig|6666666.229926.peg.1806 CDS AEJM01000036.1 269993 269826 -2 - 168 DNA recombination-dependent growth factor C DNA repair, bacterial
fig|6666666.229926.peg.1807 CDS AEJM01000036.1 270730 270008 -1 - 723 DNA recombination-dependent growth factor C DNA repair, bacterial
fig|6666666.229926.peg.1808 CDS AEJM01000036.1 270793 271608 1 + 816 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) A Hypothetical Protein Related to Proline Metabolism;
CBSS-630.2.peg.3360;
Proline Synthesis
fig|6666666.229926.peg.1809 CDS AEJM01000036.1 271608 272774 3 + 1167 Probable 3-phenylpropionic acid transporter - none -
fig|6666666.229926.peg.1810 CDS AEJM01000036.1 272771 273664 2 + 894 Tyrosine recombinase XerD - none -
fig|6666666.229926.peg.1811 CDS AEJM01000036.1 273828 275126 3 + 1299 Cell division trigger factor (EC 5.2.1.8) Bacterial Cell Division
fig|6666666.229926.peg.1812 CDS AEJM01000036.1 275280 275140 -3 - 141 hypothetical protein - none -
fig|6666666.229926.peg.1813 CDS AEJM01000037.1 769 1047 1 + 279 hypothetical protein - none -
fig|6666666.229926.peg.1814 CDS AEJM01000037.1 1049 1849 2 + 801 Cell filamentation protein fic - none -
fig|6666666.229926.peg.1815 CDS AEJM01000037.1 2024 1839 -2 - 186 hypothetical protein - none -
fig|6666666.229926.peg.1816 CDS AEJM01000037.1 2331 3056 3 + 726 Mobile element protein - none -
fig|6666666.229926.peg.1817 CDS AEJM01000037.1 4027 3296 -1 - 732 Molybdopterin biosynthesis protein MoeB Molybdenum cofactor biosynthesis
fig|6666666.229926.peg.1818 CDS AEJM01000037.1 5257 4043 -1 - 1215 Molybdopterin biosynthesis protein MoeA Molybdenum cofactor biosynthesis
fig|6666666.229926.peg.1819 CDS AEJM01000037.1 5387 6043 2 + 657 GTP cyclohydrolase I (EC 3.5.4.16) type 1 Folate Biosynthesis;
Folate biosynthesis cluster;
Molybdenum cofactor biosynthesis;
Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229926.peg.1820 CDS AEJM01000037.1 6678 6154 -3 - 525 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) Metallocarboxypeptidases (EC 3.4.17.-);
Murein Hydrolases;
Peptidoglycan Biosynthesis
fig|6666666.229926.peg.1821 CDS AEJM01000037.1 7595 6675 -2 - 921 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) Metallocarboxypeptidases (EC 3.4.17.-);
Murein Hydrolases;
Peptidoglycan Biosynthesis
fig|6666666.229926.peg.1822 CDS AEJM01000037.1 7755 8231 3 + 477 Transcription elongation factor GreA Transcription factors bacterial
fig|6666666.229926.peg.1823 CDS AEJM01000037.1 8608 8306 -1 - 303 FIG004454: RNA binding protein - none -
fig|6666666.229926.peg.1824 CDS AEJM01000037.1 8779 9075 1 + 297 Phage-related protein - none -
fig|6666666.229926.peg.1825 CDS AEJM01000037.1 9072 9365 3 + 294 FIG045511: hypothetical antitoxin (to FIG022160: hypothetical toxin) - none -
fig|6666666.229926.peg.1826 CDS AEJM01000037.1 10012 9398 -1 - 615 Riboflavin synthase eubacterial/eukaryotic (EC 2.5.1.9) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster;
riboflavin to FAD
fig|6666666.229926.peg.1827 CDS AEJM01000037.1 10039 11436 1 + 1398 Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps Multidrug Resistance Efflux Pumps;
Riboflavin, FMN and FAD metabolism in plants
fig|6666666.229926.peg.1828 CDS AEJM01000037.1 11706 13844 3 + 2139 Ferrichrome-iron receptor - none -
fig|6666666.229926.peg.1829 CDS AEJM01000037.1 13898 15643 2 + 1746 Ferrichrome-iron receptor - none -
fig|6666666.229926.peg.1830 CDS AEJM01000037.1 16236 15757 -3 - 480 Cys-tRNA(Pro) deacylase YbaK tRNA aminoacylation, Pro
fig|6666666.229926.peg.1831 CDS AEJM01000037.1 16297 17268 1 + 972 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch;
Threonine and Homoserine Biosynthesis
fig|6666666.229926.peg.1832 CDS AEJM01000037.1 17322 17951 3 + 630 Exopolysaccharide biosynthesis protein - none -
fig|6666666.229926.peg.1833 CDS AEJM01000037.1 18966 19268 3 + 303 Major pilus subunit of type IV secretion complex, VirB2 - none -
fig|6666666.229926.peg.1834 CDS AEJM01000037.1 19345 19542 1 + 198 hypothetical protein - none -
fig|6666666.229926.peg.1835 CDS AEJM01000037.1 19954 20763 1 + 810 hypothetical protein - none -
fig|6666666.229926.peg.1836 CDS AEJM01000037.1 21021 21362 3 + 342 Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229926.peg.1837 CDS AEJM01000037.1 21331 21879 1 + 549 Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229926.peg.1838 CDS AEJM01000037.1 21895 22134 1 + 240 Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229926.peg.1839 CDS AEJM01000037.1 22137 22751 3 + 615 ABC transporter ATP-binding protein - none -
fig|6666666.229926.peg.1840 CDS AEJM01000037.1 22748 23593 2 + 846 Molybdenum transport system protein ModD Molybdenum cofactor biosynthesis
fig|6666666.229926.peg.1841 CDS AEJM01000037.1 23906 25354 2 + 1449 TldD protein, part of TldE/TldD proteolytic complex CBSS-354.1.peg.2917;
Putative TldE-TldD proteolytic complex
fig|6666666.229926.peg.1842 CDS AEJM01000037.1 25405 26298 1 + 894 FIG00904191: hypothetical protein - none -
fig|6666666.229926.peg.1843 CDS AEJM01000037.1 26295 31175 3 + 4881 FIG00904191: hypothetical protein - none -
fig|6666666.229926.peg.1844 CDS AEJM01000037.1 31341 32357 3 + 1017 Putative membrane protein YeiH - none -
fig|6666666.229926.peg.1845 CDS AEJM01000037.1 32478 34835 3 + 2358 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) DNA uptake cluster;
Peptidoglycan Biosynthesis;
Type IV pilus
fig|6666666.229926.peg.1846 CDS AEJM01000037.1 35619 34945 -3 - 675 3-keto-L-gulonate 6-phosphate decarboxylase L-ascorbate utilization (and related gene clusters)
fig|6666666.229926.peg.1847 CDS AEJM01000037.1 36157 35696 -1 - 462 Ascorbate-specific PTS system, EIIA component (EC 2.7.1.-) L-ascorbate utilization (and related gene clusters)
fig|6666666.229926.peg.1848 CDS AEJM01000037.1 37984 36212 -1 - 1773 Ascorbate-specific PTS system, EIIC component L-ascorbate utilization (and related gene clusters)
fig|6666666.229926.peg.1849 CDS AEJM01000037.1 38331 39422 3 + 1092 Probable L-ascorbate-6-phosphate lactonase UlaG (EC 3.1.1.-) (L-ascorbate utilization protein G) L-ascorbate utilization (and related gene clusters)
fig|6666666.229926.peg.1850 CDS AEJM01000037.1 39514 40263 1 + 750 Ascorbate utilization transcriptional regulator UlaR, HTH-type L-ascorbate utilization (and related gene clusters)
fig|6666666.229926.peg.1851 CDS AEJM01000037.1 40302 41162 3 + 861 L-xylulose 5-phosphate 3-epimerase (EC 5.1.3.-) L-ascorbate utilization (and related gene clusters)
fig|6666666.229926.peg.1852 CDS AEJM01000037.1 41156 41851 2 + 696 L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) L-ascorbate utilization (and related gene clusters)
fig|6666666.229926.peg.1853 CDS AEJM01000037.1 43148 41934 -2 - 1215 Tyrosine-specific transport protein - none -
fig|6666666.229926.peg.1854 CDS AEJM01000037.1 43542 43667 3 + 126 hypothetical protein - none -
fig|6666666.229926.peg.1855 CDS AEJM01000037.1 44079 43816 -3 - 264 Glutaredoxin 1 Glutaredoxins;
Glutathione: Redox cycle
fig|6666666.229926.peg.1856 CDS AEJM01000037.1 44207 44941 2 + 735 Oxygen-insensitive NADPH nitroreductase (EC 1.-.-.-) - none -
fig|6666666.229926.peg.1857 CDS AEJM01000037.1 45032 45847 2 + 816 Ribosomal protein S6 glutaminyl transferase Ribosome biogenesis bacterial
fig|6666666.229926.peg.1858 CDS AEJM01000037.1 45918 46154 3 + 237 YcfP protein: probably an esterase that is part of a salvage cluster - none -
fig|6666666.229926.peg.1859 CDS AEJM01000037.1 46767 46162 -3 - 606 FIG026291: Hypothetical periplasmic protein - none -
fig|6666666.229926.peg.1860 CDS AEJM01000037.1 48265 46871 -1 - 1395 Fumarate hydratase class II (EC 4.2.1.2) TCA Cycle
fig|6666666.229926.peg.1861 CDS AEJM01000037.1 48475 48927 1 + 453 DNA polymerase III chi subunit (EC 2.7.7.7) CBSS-208964.1.peg.3826
fig|6666666.229926.peg.1862 CDS AEJM01000037.1 49009 49179 1 + 171 hypothetical protein - none -
fig|6666666.229926.peg.1863 CDS AEJM01000037.1 49250 49756 2 + 507 FIG00696806: hypothetical protein - none -
fig|6666666.229926.peg.1864 CDS AEJM01000037.1 49770 49937 3 + 168 RNA-binding domain protein - none -
fig|6666666.229926.peg.1865 CDS AEJM01000037.1 49972 51042 1 + 1071 Transcriptional regulators - none -
fig|6666666.229926.peg.1866 CDS AEJM01000037.1 51052 53916 1 + 2865 Valyl-tRNA synthetase (EC 6.1.1.9) CBSS-208964.1.peg.3826;
tRNA aminoacylation, Val
fig|6666666.229926.peg.1867 CDS AEJM01000037.1 54374 55453 2 + 1080 DNA-cytosine methyltransferase (EC 2.1.1.37) DNA repair, bacterial
fig|6666666.229926.peg.1868 CDS AEJM01000037.1 55450 56526 1 + 1077 Type II restriction enzyme HpaII (EC 3.1.21.4) - none -
fig|6666666.229926.peg.1869 CDS AEJM01000037.1 56712 56521 -3 - 192 HipA protein Persister Cells
fig|6666666.229926.peg.1870 CDS AEJM01000037.1 57200 56895 -2 - 306 HipA protein Persister Cells
fig|6666666.229926.peg.1871 CDS AEJM01000037.1 57553 57434 -1 - 120 HipA protein Persister Cells
fig|6666666.229926.peg.1872 CDS AEJM01000037.1 57613 57726 1 + 114 hypothetical protein - none -
fig|6666666.229926.peg.1873 CDS AEJM01000037.1 58022 57741 -2 - 282 HipB protein Persister Cells
fig|6666666.229926.peg.1874 CDS AEJM01000037.1 59656 58139 -1 - 1518 Inner membrane component of tripartite multidrug resistance system Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria
fig|6666666.229926.peg.1875 CDS AEJM01000037.1 60826 59666 -1 - 1161 Membrane fusion component of tripartite multidrug resistance system Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria
fig|6666666.229926.peg.1876 CDS AEJM01000037.1 61012 61494 1 + 483 Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1) Oxidative stress;
Oxidative stress;
Oxidative stress
fig|6666666.229926.peg.1877 CDS AEJM01000037.1 63589 61610 -1 - 1980 Exoribonuclease II (EC 3.1.13.1) RNA processing and degradation, bacterial
fig|6666666.229926.peg.1878 CDS AEJM01000037.1 64449 63661 -3 - 789 Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9) Fatty Acid Biosynthesis FASII
fig|6666666.229926.peg.1879 CDS AEJM01000037.1 64650 64516 -3 - 135 FIG050068: DNA-binding protein - none -
fig|6666666.229926.peg.1880 CDS AEJM01000037.1 65686 64931 -1 - 756 FIG137478: Hypothetical protein YbgI - none -
fig|6666666.229926.peg.1881 CDS AEJM01000037.1 66540 65911 -3 - 630 Queuosine Biosynthesis QueE Radical SAM Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229926.peg.1882 CDS AEJM01000037.1 66971 66546 -2 - 426 6-carboxytetrahydropterin synthase (EC 4.1.2.50) @ Queuosine biosynthesis QueD, PTPS-I Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229926.peg.1883 CDS AEJM01000037.1 68670 67162 -3 - 1509 Lysyl-tRNA synthetase (class II) (EC 6.1.1.6) tRNA aminoacylation, Lys
fig|6666666.229926.peg.1884 CDS AEJM01000038.1 422 114 -2 - 309 Cytochrome C553 (soluble cytochrome f) Iron transport system including ABC transporter;
Soluble cytochromes and functionally related electron carriers
fig|6666666.229926.peg.1885 CDS AEJM01000038.1 920 429 -2 - 492 Possible periplasmic thiredoxin Iron transport system including ABC transporter
fig|6666666.229926.peg.1886 CDS AEJM01000038.1 1581 910 -3 - 672 Fe2+ ABC transporter, ATP-binding subunit Iron transport system including ABC transporter
fig|6666666.229926.peg.1887 CDS AEJM01000038.1 2722 1583 -1 - 1140 Cell division protein FtsX Bacterial Cell Division
fig|6666666.229926.peg.1888 CDS AEJM01000038.1 4034 2709 -2 - 1326 Cell division protein FtsX Bacterial Cell Division
fig|6666666.229926.peg.1889 CDS AEJM01000038.1 5467 4037 -1 - 1431 Fe2+ ABC transporter, substrate binding protein Iron transport system including ABC transporter
fig|6666666.229926.peg.1890 CDS AEJM01000038.1 6126 5605 -3 - 522 Periplasmic protein p19 involved in high-affinity Fe2+ transport Iron transport system including ABC transporter
fig|6666666.229926.peg.1891 CDS AEJM01000038.1 8076 6169 -3 - 1908 High-affinity Fe2+/Pb2+ permease precursor Iron transport system including ABC transporter
fig|6666666.229926.peg.1892 CDS AEJM01000038.1 10776 8383 -3 - 2394 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) DNA uptake cluster;
Peptidoglycan Biosynthesis;
Type IV pilus
fig|6666666.229926.peg.1893 CDS AEJM01000038.1 11077 10805 -1 - 273 putative cytoplasmic protein - none -
fig|6666666.229926.peg.1894 CDS AEJM01000038.1 11420 11079 -2 - 342 probable iron binding protein from the HesB_IscA_SufA family - none -
fig|6666666.229926.peg.1895 CDS AEJM01000038.1 11554 12354 1 + 801 Methionine aminopeptidase (EC 3.4.11.18) CBSS-312309.3.peg.1965;
Translation termination factors bacterial
fig|6666666.229926.peg.1896 CDS AEJM01000038.1 12420 15011 3 + 2592 [Protein-PII] uridylyltransferase (EC 2.7.7.59) Ammonia assimilation;
CBSS-312309.3.peg.1965
fig|6666666.229926.peg.1897 CDS AEJM01000038.1 16368 15085 -3 - 1284 Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8) CBSS-196164.1.peg.461;
Heme and Siroheme Biosynthesis
fig|6666666.229926.peg.1898 CDS AEJM01000038.1 16497 17570 3 + 1074 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) Teichoic and lipoteichoic acids biosynthesis
fig|6666666.229926.peg.1899 CDS AEJM01000039.1 19 159 1 + 141 hypothetical protein - none -
fig|6666666.229926.peg.1900 CDS AEJM01000039.1 697 197 -1 - 501 Thiol peroxidase, Tpx-type (EC 1.11.1.15) Thioredoxin-disulfide reductase
fig|6666666.229926.peg.1901 CDS AEJM01000039.1 1803 739 -3 - 1065 Ferrochelatase, protoheme ferro-lyase (EC 4.99.1.1) Heme and Siroheme Biosynthesis
fig|6666666.229926.peg.1902 CDS AEJM01000039.1 2218 1796 -1 - 423 FIG017415: ydiI hotdog fold superfamily - none -
fig|6666666.229926.peg.1903 CDS AEJM01000039.1 5266 2228 -1 - 3039 Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD Glycolate, glyoxylate interconversions
fig|6666666.229926.peg.1904 CDS AEJM01000039.1 5766 6806 3 + 1041 Outer membrane protein A precursor Osmoregulation
fig|6666666.229926.peg.1905 CDS AEJM01000039.1 6908 7048 2 + 141 hypothetical protein - none -
fig|6666666.229926.peg.1906 CDS AEJM01000039.1 7020 7217 3 + 198 LemA family protein - none -
fig|6666666.229926.peg.1907 CDS AEJM01000039.1 7594 7923 1 + 330 Glutaredoxin-related protein Glutaredoxins
fig|6666666.229926.peg.1908 CDS AEJM01000039.1 8048 8500 2 + 453 putative membrane protein - none -
fig|6666666.229926.peg.1909 CDS AEJM01000039.1 8501 8890 2 + 390 COG2363 - none -
fig|6666666.229926.peg.1910 CDS AEJM01000039.1 8959 10416 1 + 1458 HrpA-like helicases - none -
fig|6666666.229926.peg.1911 CDS AEJM01000039.1 10590 13001 3 + 2412 HrpA-like helicases - none -
fig|6666666.229926.peg.1912 CDS AEJM01000039.1 13011 13868 3 + 858 conserved hypothetical protein - none -
fig|6666666.229926.peg.1913 CDS AEJM01000039.1 13965 14150 3 + 186 hypothetical protein - none -
fig|6666666.229926.peg.1914 CDS AEJM01000039.1 14793 14128 -3 - 666 Phosphoglycolate phosphatase (EC 3.1.3.18) 2-phosphoglycolate salvage;
Glycolate, glyoxylate interconversions
fig|6666666.229926.peg.1915 CDS AEJM01000040.1 1688 273 -2 - 1416 Branched-chain amino acid transport system carrier protein - none -
fig|6666666.229926.peg.1916 CDS AEJM01000040.1 1802 3436 2 + 1635 CTP synthase (EC 6.3.4.2) CTP synthase (EC 6.3.4.2) cluster;
pyrimidine conversions
fig|6666666.229926.peg.1917 CDS AEJM01000041.1 979 53 -1 - 927 Riboflavin kinase (EC 2.7.1.26) / FMN adenylyltransferase (EC 2.7.7.2) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin, FMN and FAD metabolism in plants;
riboflavin to FAD;
riboflavin to FAD
fig|6666666.229926.peg.1918 CDS AEJM01000041.1 2622 1057 -3 - 1566 Proposed peptidoglycan lipid II flippase MurJ Peptidoglycan lipid II flippase
fig|6666666.229926.peg.1919 CDS AEJM01000041.1 2903 3166 2 + 264 SSU ribosomal protein S20p Ribosome SSU bacterial
fig|6666666.229926.peg.1920 CDS AEJM01000041.1 3953 3276 -2 - 678 Lipoate-protein ligase A Lipoic acid metabolism
fig|6666666.229926.peg.1921 CDS AEJM01000041.1 4029 4973 3 + 945 Phosphoserine phosphatase (EC 3.1.3.3) Glycine and Serine Utilization;
Serine Biosynthesis;
Serine Biosynthesis
fig|6666666.229926.peg.1922 CDS AEJM01000041.1 4984 5475 1 + 492 FIG001943: hypothetical protein YajQ Broadly distributed proteins not in subsystems
fig|6666666.229926.peg.1923 CDS AEJM01000041.1 6364 5552 -1 - 813 Outer membrane lipoprotein e (P4) / NMN 5@1-nucleotidase, extracellular (EC 3.1.3.5) NAD and NADP cofactor biosynthesis global
fig|6666666.229926.peg.1924 CDS AEJM01000041.1 7511 6492 -2 - 1020 Zinc ABC transporter, periplasmic-binding protein ZnuA - none -
fig|6666666.229926.peg.1925 CDS AEJM01000041.1 8381 7611 -2 - 771 CsdL (EC-YgdL) protein of the HesA/MoeB/ThiF family, part of the CsdA-E-L sulfur transfer pathway - none -
fig|6666666.229926.peg.1926 CDS AEJM01000041.1 9499 8381 -1 - 1119 Membrane-bound lytic murein transglycosylase A precursor (EC 3.2.1.-) Murein Hydrolases
fig|6666666.229926.peg.1927 CDS AEJM01000041.1 9681 9544 -3 - 138 hypothetical protein - none -
fig|6666666.229926.peg.1928 CDS AEJM01000041.1 11246 9873 -2 - 1374 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (EC 6.3.2.-) Peptidoglycan biosynthesis--gjo;
Recycling of Peptidoglycan Amino Acids
fig|6666666.229926.peg.1929 CDS AEJM01000041.1 11403 12410 3 + 1008 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) Cluster Ytf and putative sugar transporter;
Glycolysis and Gluconeogenesis;
Putative sugar ABC transporter (ytf cluster)
fig|6666666.229926.peg.1930 CDS AEJM01000041.1 13672 12866 -1 - 807 Permeases of the drug/metabolite transporter (DMT) superfamily - none -
fig|6666666.229926.peg.1931 CDS AEJM01000041.1 13687 13803 1 + 117 hypothetical protein - none -
fig|6666666.229926.peg.1932 CDS AEJM01000041.1 13883 14542 2 + 660 putative membrane protein - none -
fig|6666666.229926.peg.1933 CDS AEJM01000041.1 14563 15825 1 + 1263 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) Proline Synthesis
fig|6666666.229926.peg.1934 CDS AEJM01000041.1 17019 16420 -3 - 600 hypothetical protein - none -
fig|6666666.229926.peg.1935 CDS AEJM01000041.1 18099 17902 -3 - 198 hypothetical protein - none -
fig|6666666.229926.peg.1936 CDS AEJM01000041.1 19637 21223 2 + 1587 ATPase provides energy for both assembly of type IV secretion complex and secretion of T-DNA complex (VirB4) - none -
fig|6666666.229926.peg.1937 CDS AEJM01000041.1 22435 21743 -1 - 693 Peptidoglycan hydrolase VirB1, involved in T-DNA transfer - none -
fig|6666666.229926.peg.1938 CDS AEJM01000041.1 23439 24548 3 + 1110 Cystathionine gamma-synthase (EC 2.5.1.48) Methionine Biosynthesis
fig|6666666.229926.peg.1939 CDS AEJM01000041.1 24554 25567 2 + 1014 D-lactate dehydrogenase (EC 1.1.1.28) Fermentations: Lactate;
Fermentations: Mixed acid
fig|6666666.229926.peg.1940 CDS AEJM01000041.1 25775 25990 2 + 216 Thioredoxin - none -
fig|6666666.229926.peg.1941 CDS AEJM01000041.1 27135 26176 -3 - 960 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) RNA pseudouridine syntheses;
Ribosome biogenesis bacterial
fig|6666666.229926.peg.1942 CDS AEJM01000041.1 27468 27602 3 + 135 hypothetical protein - none -
fig|6666666.229926.peg.1943 CDS AEJM01000041.1 27608 30490 2 + 2883 Ribonuclease E (EC 3.1.26.12) RNA processing and degradation, bacterial;
Ribosome biogenesis bacterial
fig|6666666.229926.peg.1944 CDS AEJM01000041.1 31318 30929 -1 - 390 INTEGRAL MEMBRANE PROTEIN (Rhomboid family) - none -
fig|6666666.229926.peg.1945 CDS AEJM01000041.1 33248 31398 -2 - 1851 Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8) Biogenesis of c-type cytochromes;
Periplasmic disulfide interchange
fig|6666666.229926.peg.1946 CDS AEJM01000041.1 33412 33981 1 + 570 Lysine decarboxylase family - none -
fig|6666666.229926.peg.1947 CDS AEJM01000041.1 34193 34459 2 + 267 LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-independent Ribosome LSU bacterial;
Ribosome LSU bacterial
fig|6666666.229926.peg.1948 CDS AEJM01000041.1 34864 35571 1 + 708 Aerobic respiration control protein arcA - none -
fig|6666666.229926.peg.1949 CDS AEJM01000041.1 36665 35667 -2 - 999 Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229926.peg.1950 CDS AEJM01000041.1 37645 36662 -1 - 984 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229926.peg.1951 CDS AEJM01000041.1 38593 37655 -1 - 939 Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229926.peg.1952 CDS AEJM01000041.1 39523 38603 -1 - 921 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229926.peg.1953 CDS AEJM01000041.1 39618 39505 -3 - 114 hypothetical protein - none -
fig|6666666.229926.peg.1954 CDS AEJM01000041.1 41251 39626 -1 - 1626 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229926.peg.1955 CDS AEJM01000041.1 41631 42113 3 + 483 tmRNA-binding protein SmpB Heat shock dnaK gene cluster extended;
Translation termination factors bacterial
fig|6666666.229926.peg.1956 CDS AEJM01000041.1 42065 42184 2 + 120 hypothetical protein - none -
fig|6666666.229926.peg.1957 CDS AEJM01000041.1 43356 42181 -3 - 1176 GTP-binding protein Obg CBSS-176279.3.peg.868;
Universal GTPases
fig|6666666.229926.peg.1958 CDS AEJM01000041.1 44310 43393 -3 - 918 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229926.peg.1959 CDS AEJM01000041.1 45322 44378 -1 - 945 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229926.peg.1960 CDS AEJM01000041.1 45651 45394 -3 - 258 LSU ribosomal protein L27p CBSS-176279.3.peg.868;
Ribosome LSU bacterial
fig|6666666.229926.peg.1961 CDS AEJM01000041.1 45983 45672 -2 - 312 LSU ribosomal protein L21p CBSS-176279.3.peg.868;
Ribosome LSU bacterial
fig|6666666.229926.peg.1962 CDS AEJM01000041.1 46250 47221 2 + 972 Octaprenyl diphosphate synthase (EC 2.5.1.90) / Dimethylallyltransferase (EC 2.5.1.1) / (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10) / Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29) Isoprenoid Biosynthesis;
Isoprenoid Biosynthesis;
Isoprenoid Biosynthesis: Interconversions;
Isoprenoinds for Quinones;
Isoprenoinds for Quinones;
Isoprenoinds for Quinones;
Polyprenyl Diphosphate Biosynthesis;
Polyprenyl Diphosphate Biosynthesis
fig|6666666.229926.peg.1963 CDS AEJM01000041.1 48068 48796 2 + 729 FIG053235: Diacylglucosamine hydrolase like Llipid A biosynthesis cluster
fig|6666666.229926.peg.1964 CDS AEJM01000041.1 49338 50723 3 + 1386 tRNA-i(6)A37 methylthiotransferase Methylthiotransferases;
tRNA-methylthiotransferase containing cluster;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229926.peg.1965 CDS AEJM01000041.1 51349 50780 -1 - 570 Primosomal replication protein N@1@1 - none -
fig|6666666.229926.peg.1966 CDS AEJM01000041.1 52771 51419 -1 - 1353 Histidine permease YuiF - none -
fig|6666666.229926.peg.1967 CDS AEJM01000042.1 958 122 -1 - 837 PTS system, mannose-specific IID component - none -
fig|6666666.229926.peg.1968 CDS AEJM01000042.1 1769 972 -2 - 798 PTS system, mannose-specific IIC component (EC 2.7.1.69) Mannose Metabolism;
Sialic Acid Metabolism
fig|6666666.229926.peg.1969 CDS AEJM01000042.1 2764 1787 -1 - 978 PTS system, mannose-specific IIA component / PTS system, mannose-specific IIB component (EC 2.7.1.69) Mannose Metabolism;
Sialic Acid Metabolism
fig|6666666.229926.peg.1970 CDS AEJM01000042.1 3650 3066 -2 - 585 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) CBSS-266117.6.peg.1260;
CBSS-269801.1.peg.1715;
RNA methylation
fig|6666666.229926.peg.1971 CDS AEJM01000042.1 3666 5093 3 + 1428 Signal recognition particle receptor protein FtsY (=alpha subunit) (TC 3.A.5.1.1) Bacterial Cell Division;
Bacterial signal recognition particle (SRP);
Universal GTPases
fig|6666666.229926.peg.1972 CDS AEJM01000042.1 5275 6279 1 + 1005 Tryptophanyl-tRNA synthetase (EC 6.1.1.2) tRNA aminoacylation, Trp
fig|6666666.229926.peg.1973 CDS AEJM01000042.1 7010 6366 -2 - 645 3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster;
riboflavin to FAD
fig|6666666.229926.peg.1974 CDS AEJM01000042.1 7244 7038 -2 - 207 hypothetical protein - none -
fig|6666666.229926.peg.1975 CDS AEJM01000042.1 8463 7690 -3 - 774 Zn-dependent protease with chaperone function - none -
fig|6666666.229926.peg.1976 CDS AEJM01000042.1 9067 8540 -1 - 528 Inorganic pyrophosphatase (EC 3.6.1.1) Phosphate metabolism
fig|6666666.229926.peg.1977 CDS AEJM01000042.1 9230 10474 2 + 1245 Tryptophan-specific transport protein - none -
fig|6666666.229926.peg.1978 CDS AEJM01000042.1 10777 11010 1 + 234 hypothetical protein - none -
fig|6666666.229926.peg.1979 CDS AEJM01000042.1 12206 11499 -2 - 708 NMN phosphatase (EC 3.1.3.5); Class B acid phosphatase precursor (EC 3.1.3.2) NAD and NADP cofactor biosynthesis global
fig|6666666.229926.peg.1980 CDS AEJM01000042.1 12421 12948 1 + 528 ATP-dependent protease HslV (EC 3.4.25.-) Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229926.peg.1981 CDS AEJM01000042.1 12969 14300 3 + 1332 ATP-dependent hsl protease ATP-binding subunit HslU Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229926.peg.1982 CDS AEJM01000042.1 14366 15949 2 + 1584 Nickel ABC transporter, periplasmic nickel-binding protein NikA (TC 3.A.1.5.3) Transport of Nickel and Cobalt
fig|6666666.229926.peg.1983 CDS AEJM01000042.1 16015 16791 1 + 777 Nucleoside ABC transporter, periplasmic nucleoside-binding protein - none -
fig|6666666.229926.peg.1984 CDS AEJM01000042.1 16809 17303 3 + 495 Protein yfbU - none -
fig|6666666.229926.peg.1985 CDS AEJM01000042.1 17538 17386 -3 - 153 Phosphoglycerate mutase (EC 5.4.2.1) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis;
Phosphoglycerate mutase protein family
fig|6666666.229926.peg.1986 CDS AEJM01000042.1 18070 17579 -1 - 492 Phosphoglycerate mutase (EC 5.4.2.1) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis;
Phosphoglycerate mutase protein family
fig|6666666.229926.peg.1987 CDS AEJM01000042.1 18374 20032 2 + 1659 Phosphoglucosamine mutase (EC 5.4.2.10) Sialic Acid Metabolism;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229926.peg.1988 CDS AEJM01000042.1 20240 21499 2 + 1260 Periplasmic septal ring factor with murein hydrolase activity EnvC/YibP CBSS-224911.1.peg.435;
Glutaredoxins;
Phosphoglycerate mutase protein family
fig|6666666.229926.peg.1989 CDS AEJM01000042.1 21496 22323 1 + 828 Putative periplasmic protein YibQ, distant homology with nucleoside diphosphatase and polysaccharide deacetylase CBSS-224911.1.peg.435;
Phosphoglycerate mutase protein family
fig|6666666.229926.peg.1990 CDS AEJM01000042.1 23039 22335 -2 - 705 MG(2+) CHELATASE FAMILY PROTEIN / ComM-related protein CBSS-203122.12.peg.188;
CBSS-203122.12.peg.188
fig|6666666.229926.peg.1991 CDS AEJM01000042.1 23175 23837 3 + 663 FIGfam050825 CBSS-203122.12.peg.188
fig|6666666.229926.peg.1992 CDS AEJM01000042.1 23830 25749 1 + 1920 TniA putative transposase CBSS-203122.12.peg.188
fig|6666666.229926.peg.1993 CDS AEJM01000042.1 25749 26642 3 + 894 TniB NTP-binding protein CBSS-203122.12.peg.188
fig|6666666.229926.peg.1994 CDS AEJM01000042.1 26600 27718 2 + 1119 Mll9366 protein CBSS-203122.12.peg.188
fig|6666666.229926.peg.1995 CDS AEJM01000042.1 27715 29130 1 + 1416 FIGfam110555 CBSS-203122.12.peg.188
fig|6666666.229926.peg.1996 CDS AEJM01000042.1 29958 31538 3 + 1581 Recombinase - none -
fig|6666666.229926.peg.1997 CDS AEJM01000042.1 31771 32328 1 + 558 Chromosome (plasmid) partitioning protein ParB Bacterial Cytoskeleton;
Cell Division Subsystem including YidCD;
RNA modification and chromosome partitioning cluster
fig|6666666.229926.peg.1998 CDS AEJM01000042.1 32363 33175 2 + 813 Bll0873 protein - none -
fig|6666666.229926.peg.1999 CDS AEJM01000042.1 34512 33997 -3 - 516 hypothetical protein - none -
fig|6666666.229926.peg.2000 CDS AEJM01000042.1 40467 34516 -3 - 5952 VgrG protein - none -
fig|6666666.229926.peg.2001 CDS AEJM01000042.1 40739 41398 2 + 660 Methyltransferase - none -
fig|6666666.229926.peg.2002 CDS AEJM01000042.1 41414 42241 2 + 828 Thermostable 8-oxoguanine DNA glycosylase - none -
fig|6666666.229926.peg.2003 CDS AEJM01000042.1 44725 43478 -1 - 1248 Ribokinase (EC 2.7.1.15) D-ribose utilization;
Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.229926.peg.2004 CDS AEJM01000042.1 47061 45313 -3 - 1749 hypothetical protein - none -
fig|6666666.229926.peg.2005 CDS AEJM01000042.1 48029 47163 -2 - 867 MG(2+) CHELATASE FAMILY PROTEIN CBSS-203122.12.peg.188
fig|6666666.229926.peg.2006 CDS AEJM01000042.1 48758 48144 -2 - 615 GTP-binding protein EngB Universal GTPases
fig|6666666.229926.peg.2007 CDS AEJM01000042.1 48893 49378 2 + 486 Membrane protein LAPB - none -
fig|6666666.229926.peg.2008 CDS AEJM01000042.1 49375 49767 1 + 393 Membrane protein LAPB - none -
fig|6666666.229926.peg.2009 CDS AEJM01000042.1 50339 49863 -2 - 477 tRNA (cytidine(34)-2@1-O)-methyltransferase (EC 2.1.1.207) RNA methylation
fig|6666666.229926.peg.2010 CDS AEJM01000042.1 50955 50458 -3 - 498 Phospholipid-binding protein - none -
fig|6666666.229926.peg.2011 CDS AEJM01000042.1 51891 51061 -3 - 831 Methionine ABC transporter substrate-binding protein Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229926.peg.2012 CDS AEJM01000042.1 52603 51926 -1 - 678 Methionine ABC transporter permease protein Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229926.peg.2013 CDS AEJM01000042.1 53630 52593 -2 - 1038 Methionine ABC transporter ATP-binding protein Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229926.peg.2014 CDS AEJM01000043.1 72 584 3 + 513 Peptide deformylase (EC 3.5.1.88) Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Translation termination factors bacterial
fig|6666666.229926.peg.2015 CDS AEJM01000044.1 857 402 -2 - 456 Mobile element protein - none -
fig|6666666.229926.peg.2016 CDS AEJM01000045.1 1085 1216 2 + 132 hypothetical protein - none -
fig|6666666.229926.peg.2017 CDS AEJM01000045.1 2436 1210 -3 - 1227 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229926.peg.2018 CDS AEJM01000047.1 378 133 -3 - 246 Huntingtin interacting protein E-like protein - none -
fig|6666666.229926.peg.2019 CDS AEJM01000047.1 567 415 -3 - 153 hypothetical protein - none -
fig|6666666.229926.peg.2020 CDS AEJM01000047.1 712 545 -1 - 168 hypothetical protein - none -
fig|6666666.229926.peg.2021 CDS AEJM01000047.1 2552 1080 -2 - 1473 Xylulose kinase (EC 2.7.1.17) Xylose utilization
fig|6666666.229926.peg.2022 CDS AEJM01000047.1 3921 2602 -3 - 1320 Xylose isomerase (EC 5.3.1.5) Xylose utilization
fig|6666666.229926.peg.2023 CDS AEJM01000047.1 4179 5177 3 + 999 Xylose ABC transporter, periplasmic xylose-binding protein XylF Xylose utilization
fig|6666666.229926.peg.2024 CDS AEJM01000047.1 5237 5554 2 + 318 D-xylose transport ATP-binding protein XylG Xylose utilization
fig|6666666.229926.peg.2025 CDS AEJM01000047.1 5538 6749 3 + 1212 D-xylose transport ATP-binding protein XylG Xylose utilization
fig|6666666.229926.peg.2026 CDS AEJM01000047.1 6753 7880 3 + 1128 Xylose ABC transporter, permease protein XylH Xylose utilization
fig|6666666.229926.peg.2027 CDS AEJM01000047.1 8335 8463 1 + 129 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229926.peg.2028 CDS AEJM01000048.1 240 392 3 + 153 Mobile element protein - none -
fig|6666666.229926.peg.2029 CDS AEJM01000048.1 745 864 1 + 120 hypothetical protein - none -
fig|6666666.229926.peg.2030 CDS AEJM01000048.1 2305 3162 1 + 858 Methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5) / Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9) 5-FCL-like protein;
One-carbon metabolism by tetrahydropterines;
One-carbon metabolism by tetrahydropterines
fig|6666666.229926.peg.2031 CDS AEJM01000048.1 4895 3252 -2 - 1644 Heat shock protein 60 family chaperone GroEL GroEL GroES
fig|6666666.229926.peg.2032 CDS AEJM01000048.1 5306 5016 -2 - 291 Heat shock protein 60 family co-chaperone GroES GroEL GroES
fig|6666666.229926.peg.2033 CDS AEJM01000048.1 5874 5392 -3 - 483 FxsA protein - none -
fig|6666666.229926.peg.2034 CDS AEJM01000048.1 6105 7523 3 + 1419 Aspartate ammonia-lyase (EC 4.3.1.1) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229926.peg.2035 CDS AEJM01000048.1 7706 8755 2 + 1050 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) LOS core oligosaccharide biosynthesis
fig|6666666.229926.peg.2036 CDS AEJM01000048.1 9124 9005 -1 - 120 Integral membrane protein - none -
fig|6666666.229926.peg.2037 CDS AEJM01000048.1 9278 9135 -2 - 144 hypothetical protein - none -
fig|6666666.229926.peg.2038 CDS AEJM01000048.1 10282 9659 -1 - 624 Hydrolase, haloacid dehalogenase-like family - none -
fig|6666666.229926.peg.2039 CDS AEJM01000048.1 10691 10335 -2 - 357 Diacylglycerol kinase (EC 2.7.1.107) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Riboflavin synthesis cluster
fig|6666666.229926.peg.2040 CDS AEJM01000048.1 12952 10721 -1 - 2232 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I CBSS-176299.4.peg.1292;
Stringent Response, (p)ppGpp metabolism
fig|6666666.229926.peg.2041 CDS AEJM01000048.1 14278 12962 -1 - 1317 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) RNA methylation
fig|6666666.229926.peg.2042 CDS AEJM01000048.1 14966 14280 -2 - 687 DNA recombination and repair protein RecO CBSS-176299.4.peg.1292;
DNA repair, bacterial RecFOR pathway;
Glycyl-tRNA synthetase containing cluster
fig|6666666.229926.peg.2043 CDS AEJM01000048.1 16431 15583 -3 - 849 Translation elongation factor Ts CBSS-312309.3.peg.1965;
Ribosome recycling related cluster;
Translation elongation factors bacterial
fig|6666666.229926.peg.2044 CDS AEJM01000048.1 17310 16588 -3 - 723 SSU ribosomal protein S2p (SAe) CBSS-312309.3.peg.1965;
Ribosome SSU bacterial;
Ribosome recycling related cluster
fig|6666666.229926.peg.2045 CDS AEJM01000048.1 17710 17462 -1 - 249 hypothetical protein - none -
fig|6666666.229926.peg.2046 CDS AEJM01000048.1 18603 17719 -3 - 885 Folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress - none -
fig|6666666.229926.peg.2047 CDS AEJM01000048.1 19494 18631 -3 - 864 Protein YicC CBSS-323097.3.peg.2594
fig|6666666.229926.peg.2048 CDS AEJM01000048.1 19612 20328 1 + 717 Ribonuclease PH (EC 2.7.7.56) Heat shock dnaK gene cluster extended;
tRNA processing
fig|6666666.229926.peg.2049 CDS AEJM01000048.1 20338 20982 1 + 645 Orotate phosphoribosyltransferase (EC 2.4.2.10) De Novo Pyrimidine Synthesis
fig|6666666.229926.peg.2050 CDS AEJM01000048.1 21108 21938 3 + 831 DnaJ-like protein DjlA - none -
fig|6666666.229926.peg.2051 CDS AEJM01000048.1 21942 22946 3 + 1005 tRNA-dihydrouridine synthase C (EC 1.-.-.-) Murein hydrolase regulation and cell death;
tRNA modification Bacteria
fig|6666666.229926.peg.2052 CDS AEJM01000048.1 23990 22932 -2 - 1059 Ferric iron ABC transporter, ATP-binding protein Iron acquisition in Streptococcus
fig|6666666.229926.peg.2053 CDS AEJM01000048.1 25526 24006 -2 - 1521 Ferric iron ABC transporter, permease protein Iron acquisition in Streptococcus
fig|6666666.229926.peg.2054 CDS AEJM01000048.1 26615 25617 -2 - 999 Ferric iron ABC transporter, iron-binding protein Iron acquisition in Streptococcus
fig|6666666.229926.peg.2055 CDS AEJM01000048.1 27176 26835 -2 - 342 FIG002060: uncharacterized protein YggL CBSS-83333.1.peg.2911
fig|6666666.229926.peg.2056 CDS AEJM01000048.1 27975 27208 -3 - 768 tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33) CBSS-83333.1.peg.2911;
RNA methylation;
tRNA modification Bacteria
fig|6666666.229926.peg.2057 CDS AEJM01000048.1 28140 29330 3 + 1191 A/G-specific adenine glycosylase (EC 3.2.2.-) DNA repair, bacterial
fig|6666666.229926.peg.2058 CDS AEJM01000048.1 29308 29586 1 + 279 FIG001341: Probable Fe(2+)-trafficking protein YggX Heat shock dnaK gene cluster extended
fig|6666666.229926.peg.2059 CDS AEJM01000048.1 29589 30668 3 + 1080 Membrane-bound lytic murein transglycosylase C precursor (EC 3.2.1.-) Murein Hydrolases
fig|6666666.229926.peg.2060 CDS AEJM01000048.1 31063 31188 1 + 126 hypothetical protein - none -
fig|6666666.229926.peg.2061 CDS AEJM01000048.1 31762 31169 -1 - 594 Hypothetical lipoprotein YajG precursor CBSS-339671.5.peg.589
fig|6666666.229926.peg.2062 CDS AEJM01000048.1 31866 32177 3 + 312 Cell division protein BolA Bacterial Cell Division;
CBSS-339671.5.peg.589
fig|6666666.229926.peg.2063 CDS AEJM01000048.1 32187 32303 3 + 117 hypothetical protein - none -
fig|6666666.229926.peg.2064 CDS AEJM01000048.1 32341 32508 1 + 168 hypothetical protein - none -
fig|6666666.229926.peg.2065 CDS AEJM01000048.1 32533 33873 1 + 1341 Na(+)-translocating NADH-quinone reductase subunit A (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229926.peg.2066 CDS AEJM01000048.1 33876 35111 3 + 1236 Na(+)-translocating NADH-quinone reductase subunit B (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229926.peg.2067 CDS AEJM01000048.1 35104 35889 1 + 786 Na(+)-translocating NADH-quinone reductase subunit C (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229926.peg.2068 CDS AEJM01000048.1 35889 36518 3 + 630 Na(+)-translocating NADH-quinone reductase subunit D (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229926.peg.2069 CDS AEJM01000048.1 36522 37118 3 + 597 Na(+)-translocating NADH-quinone reductase subunit E (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229926.peg.2070 CDS AEJM01000048.1 37130 38365 2 + 1236 Na(+)-translocating NADH-quinone reductase subunit F (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229926.peg.2071 CDS AEJM01000048.1 38370 38519 3 + 150 hypothetical protein - none -
fig|6666666.229926.peg.2072 CDS AEJM01000048.1 38516 39604 2 + 1089 Thiamin biosynthesis lipoprotein ApbE - none -
fig|6666666.229926.peg.2073 CDS AEJM01000048.1 39683 39940 2 + 258 Probable exported or periplasmic protein in ApbE locus Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229926.peg.2074 CDS AEJM01000048.1 40201 41352 1 + 1152 tRNA-specific 2-thiouridylase MnmA RNA methylation
fig|6666666.229926.peg.2075 CDS AEJM01000048.1 41580 41759 3 + 180 hypothetical protein - none -
fig|6666666.229926.peg.2076 CDS AEJM01000048.1 41890 41756 -1 - 135 hypothetical protein - none -
fig|6666666.229926.peg.2077 CDS AEJM01000048.1 41997 43307 3 + 1311 Enolase (EC 4.2.1.11) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis
fig|6666666.229926.peg.2078 CDS AEJM01000048.1 43822 43403 -1 - 420 Putative Holliday junction resolvase YggF Cluster containing Alanyl-tRNA synthetase;
Cluster containing Glutathione synthetase
fig|6666666.229926.peg.2079 CDS AEJM01000048.1 44379 43822 -3 - 558 UPF0301 protein YqgE Cluster containing Glutathione synthetase
fig|6666666.229926.peg.2080 CDS AEJM01000048.1 45032 44397 -2 - 636 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) Cluster containing Glutathione synthetase;
Heat shock dnaK gene cluster extended;
RNA methylation
fig|6666666.229926.peg.2081 CDS AEJM01000048.1 45522 45205 -3 - 318 Methionine repressor MetJ Methionine Biosynthesis
fig|6666666.229926.peg.2082 CDS AEJM01000048.1 46563 45676 -3 - 888 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) - none -
fig|6666666.229926.peg.2083 CDS AEJM01000048.1 48003 46639 -3 - 1365 Phosphomannomutase (EC 5.4.2.8) Mannose Metabolism
fig|6666666.229926.peg.2084 CDS AEJM01000048.1 48217 48035 -1 - 183 Carbon storage regulator Carbon Starvation;
Carbon storage regulator
fig|6666666.229926.peg.2085 CDS AEJM01000048.1 50964 48340 -3 - 2625 Alanyl-tRNA synthetase (EC 6.1.1.7) Cluster containing Alanyl-tRNA synthetase;
tRNA aminoacylation, Ala
fig|6666666.229926.peg.2086 CDS AEJM01000048.1 51589 51164 -1 - 426 Universal stress protein A Universal stress protein family
fig|6666666.229926.peg.2087 CDS AEJM01000048.1 51707 52564 2 + 858 Nucleoside triphosphate pyrophosphohydrolase MazG (EC 3.6.1.8) Nucleoside triphosphate pyrophosphohydrolase MazG
fig|6666666.229926.peg.2088 CDS AEJM01000048.1 53650 52661 -1 - 990 Cytosine deaminase (EC 3.5.4.1) CBSS-326442.4.peg.1852;
Creatine and Creatinine Degradation;
pyrimidine conversions
fig|6666666.229926.peg.2089 CDS AEJM01000048.1 55648 53909 -1 - 1740 FIG001881: hydrolase of alkaline phosphatase superfamily CBSS-211586.1.peg.1979
fig|6666666.229926.peg.2090 CDS AEJM01000048.1 55877 55653 -2 - 225 FIG002927: hypothetical protein CBSS-211586.1.peg.1979
fig|6666666.229926.peg.2091 CDS AEJM01000048.1 56004 57029 3 + 1026 Nucleoid-associated protein NdpA CBSS-211586.1.peg.1979
fig|6666666.229926.peg.2092 CDS AEJM01000048.1 57095 57508 2 + 414 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex Lipopolysaccharide assembly
fig|6666666.229926.peg.2093 CDS AEJM01000048.1 57548 58243 2 + 696 Copper-sensing two-component system response regulator CpxR Orphan regulatory proteins
fig|6666666.229926.peg.2094 CDS AEJM01000048.1 58288 59676 1 + 1389 Copper sensory histidine kinase CpxA Orphan regulatory proteins
fig|6666666.229926.peg.2095 CDS AEJM01000048.1 60942 59734 -3 - 1209 Sodium/glutamate symport protein - none -
fig|6666666.229926.peg.2096 CDS AEJM01000048.1 62367 61108 -3 - 1260 Ribonuclease BN (EC 3.1.-.-) - none -
fig|6666666.229926.peg.2097 CDS AEJM01000048.1 62840 62364 -2 - 477 UPF0225 protein YchJ Broadly distributed proteins not in subsystems
fig|6666666.229926.peg.2098 CDS AEJM01000048.1 63505 62843 -1 - 663 Uncharacterized protein conserved in bacteria - none -
fig|6666666.229926.peg.2099 CDS AEJM01000048.1 63637 65136 1 + 1500 ATPase component BioM of energizing module of biotin ECF transporter ECF class transporters
fig|6666666.229926.peg.2100 CDS AEJM01000048.1 65220 65579 3 + 360 Mobile element protein - none -
fig|6666666.229926.peg.2101 CDS AEJM01000048.1 65600 66397 2 + 798 Mobile element protein - none -
fig|6666666.229926.peg.2102 CDS AEJM01000048.1 66630 67445 3 + 816 putative tetracenomycin polyketide synthesis O-methyltransferase - none -
fig|6666666.229926.peg.2103 CDS AEJM01000048.1 68065 67535 -1 - 531 Transcriptional regulator, LysR family - none -
fig|6666666.229926.peg.2104 CDS AEJM01000048.1 68499 68921 3 + 423 Aldo-keto reductase - none -
fig|6666666.229926.peg.2105 CDS AEJM01000048.1 68960 69634 2 + 675 Aldo-keto reductase - none -
fig|6666666.229926.peg.2106 CDS AEJM01000048.1 69687 70667 3 + 981 Aldo-keto reductase - none -
fig|6666666.229926.peg.2107 CDS AEJM01000048.1 70880 72538 2 + 1659 Carboxylesterase type B - none -
fig|6666666.229926.peg.2108 CDS AEJM01000048.1 72852 72968 3 + 117 hypothetical protein - none -
fig|6666666.229926.peg.2109 CDS AEJM01000048.1 72953 73960 2 + 1008 Putative exported protein precursor - none -
fig|6666666.229926.peg.2110 CDS AEJM01000048.1 74991 74101 -3 - 891 Transcriptional regulator, LysR family - none -
fig|6666666.229926.peg.2111 CDS AEJM01000048.1 75095 76159 2 + 1065 FIG01220323: hypothetical protein - none -
fig|6666666.229926.peg.2112 CDS AEJM01000048.1 78145 76313 -1 - 1833 Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) Sialic Acid Metabolism;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229926.peg.2113 CDS AEJM01000048.1 78997 78200 -1 - 798 Transcriptional regulator of glmS gene, DeoR family - none -
fig|6666666.229926.peg.2114 CDS AEJM01000048.1 79395 79123 -3 - 273 DNA-binding protein HU-alpha DNA structural proteins, bacterial;
DNA uptake cluster
fig|6666666.229926.peg.2115 CDS AEJM01000048.1 80155 79562 -1 - 594 FIG01200173: hypothetical protein - none -
fig|6666666.229926.peg.2116 CDS AEJM01000048.1 81234 80170 -3 - 1065 Uroporphyrinogen III decarboxylase (EC 4.1.1.37) Heme and Siroheme Biosynthesis
fig|6666666.229926.peg.2117 CDS AEJM01000048.1 82032 81247 -3 - 786 NADH pyrophosphatase (EC 3.6.1.22) DNA uptake cluster;
Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229926.peg.2118 CDS AEJM01000048.1 82814 82170 -2 - 645 converved hypothetical protein - none -
fig|6666666.229926.peg.2119 CDS AEJM01000048.1 83074 84690 1 + 1617 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) CBSS-584.1.peg.3382;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229926.peg.2120 CDS AEJM01000048.1 86301 84754 -3 - 1548 Exopolyphosphatase (EC 3.6.1.11) Phosphate metabolism;
Polyphosphate
fig|6666666.229926.peg.2121 CDS AEJM01000048.1 90185 86304 -2 - 3882 Uncharacterized protein YtfN Cluster Ytf and putative sugar transporter;
Putative sugar ABC transporter (ytf cluster)
fig|6666666.229926.peg.2122 CDS AEJM01000048.1 92072 90213 -2 - 1860 Uncharacterized protein YtfM precursor Cluster Ytf and putative sugar transporter;
Putative sugar ABC transporter (ytf cluster)
fig|6666666.229926.peg.2123 CDS AEJM01000048.1 92768 92139 -2 - 630 Nitrate/nitrite response regulator protein - none -
fig|6666666.229926.peg.2124 CDS AEJM01000048.1 95279 92778 -2 - 2502 Adenylate cyclase (EC 4.6.1.1) cAMP signaling in bacteria
fig|6666666.229926.peg.2125 CDS AEJM01000048.1 95315 96361 2 + 1047 Porphobilinogen deaminase (EC 2.5.1.61) Heme and Siroheme Biosynthesis
fig|6666666.229926.peg.2126 CDS AEJM01000048.1 96374 97120 2 + 747 Uroporphyrinogen-III synthase (EC 4.2.1.75) Heme and Siroheme Biosynthesis
fig|6666666.229926.peg.2127 CDS AEJM01000048.1 97148 98533 2 + 1386 Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) Heme and Siroheme Biosynthesis
fig|6666666.229926.peg.2128 CDS AEJM01000048.1 98546 99793 2 + 1248 Uncharacterized protein EC-HemY, likely associated with heme metabolism based on gene clustering with hemC, hemD in Proteobacteria (unrelated to HemY-type PPO in GramPositives) - none -
fig|6666666.229926.peg.2129 CDS AEJM01000048.1 100606 99869 -1 - 738 Putative preQ0 transporter Queuosine-Archaeosine Biosynthesis
fig|6666666.229926.peg.2130 CDS AEJM01000048.1 100867 101148 1 + 282 hypothetical protein - none -
fig|6666666.229926.peg.2131 CDS AEJM01000048.1 101334 101921 3 + 588 DNA-directed RNA polymerase specialized sigma subunit, sigma24-like - none -
fig|6666666.229926.peg.2132 CDS AEJM01000048.1 101936 102127 2 + 192 hypothetical protein - none -
fig|6666666.229926.peg.2133 CDS AEJM01000048.1 102692 102210 -2 - 483 Transcription elongation factor GreB CBSS-243265.1.peg.198;
Transcription factors bacterial
fig|6666666.229926.peg.2134 CDS AEJM01000048.1 102822 102980 3 + 159 Transcription accessory protein (S1 RNA-binding domain) CBSS-243265.1.peg.198;
Cell division-ribosomal stress proteins cluster;
Transcription factors bacterial
fig|6666666.229926.peg.2135 CDS AEJM01000048.1 102987 103106 3 + 120 Transcription accessory protein (S1 RNA-binding domain) CBSS-243265.1.peg.198;
Cell division-ribosomal stress proteins cluster;
Transcription factors bacterial
fig|6666666.229926.peg.2136 CDS AEJM01000048.1 103107 103295 3 + 189 hypothetical protein - none -
fig|6666666.229926.peg.2137 CDS AEJM01000048.1 104031 103432 -3 - 600 Phosphoglycerate mutase (EC 5.4.2.1) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis;
Phosphoglycerate mutase protein family
fig|6666666.229926.peg.2138 CDS AEJM01000048.1 105512 104043 -2 - 1470 Sodium-dependent transporter - none -
fig|6666666.229926.peg.2139 CDS AEJM01000048.1 105622 106509 1 + 888 RuBisCO operon transcriptional regulator CO2 uptake, carboxysome
fig|6666666.229926.peg.2140 CDS AEJM01000048.1 106727 109042 2 + 2316 Transcription accessory protein (S1 RNA-binding domain) CBSS-243265.1.peg.198;
Cell division-ribosomal stress proteins cluster;
Transcription factors bacterial
fig|6666666.229926.peg.2141 CDS AEJM01000048.1 110550 109093 -3 - 1458 L-xylulose/3-keto-L-gulonate kinase (EC 2.7.1.-) L-ascorbate utilization (and related gene clusters)
fig|6666666.229926.peg.2142 CDS AEJM01000048.1 111584 110556 -2 - 1029 Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229926.peg.2143 CDS AEJM01000048.1 113087 111600 -2 - 1488 Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229926.peg.2144 CDS AEJM01000048.1 113250 114191 3 + 942 Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229926.peg.2145 CDS AEJM01000049.1 59 418 2 + 360 Mobile element protein - none -
fig|6666666.229926.peg.2146 CDS AEJM01000049.1 439 1236 1 + 798 Mobile element protein - none -
fig|6666666.229926.peg.2147 CDS AEJM01000051.1 69 188 3 + 120 hypothetical protein - none -
fig|6666666.229926.peg.2148 CDS AEJM01000051.1 241 1056 1 + 816 filamentation induced by cAMP protein Fic-like protein - none -
fig|6666666.229926.peg.2149 CDS AEJM01000052.1 1060 17 -1 - 1044 Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10) Lactose and Galactose Uptake and Utilization
fig|6666666.229926.peg.2150 CDS AEJM01000052.1 1302 2315 3 + 1014 Galactose operon repressor, GalR-LacI family of transcriptional regulators Lactose and Galactose Uptake and Utilization
fig|6666666.229926.peg.2151 CDS AEJM01000052.1 2529 3521 3 + 993 Galactose/methyl galactoside ABC transport system, D-galactose-binding periplasmic protein MglB (TC 3.A.1.2.3) Bacterial Chemotaxis;
Lactose and Galactose Uptake and Utilization
fig|6666666.229926.peg.2152 CDS AEJM01000052.1 3596 5134 2 + 1539 Galactose/methyl galactoside ABC transport system, ATP-binding protein MglA (EC 3.6.3.17) Lactose and Galactose Uptake and Utilization
fig|6666666.229926.peg.2153 CDS AEJM01000052.1 5153 6163 2 + 1011 Galactose/methyl galactoside ABC transport system, permease protein MglC (TC 3.A.1.2.3) Lactose and Galactose Uptake and Utilization
fig|6666666.229926.peg.2154 CDS AEJM01000052.1 8084 6237 -2 - 1848 Aerobic respiration control sensor protein arcB (EC 2.7.3.-) - none -
fig|6666666.229926.peg.2155 CDS AEJM01000052.1 8110 8244 1 + 135 hypothetical protein - none -
fig|6666666.229926.peg.2156 CDS AEJM01000052.1 9445 8225 -1 - 1221 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41) Fatty Acid Biosynthesis FASII
fig|6666666.229926.peg.2157 CDS AEJM01000052.1 9615 11633 3 + 2019 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) CBSS-354.1.peg.876;
RNA methylation;
Riboflavin, FMN and FAD metabolism in plants;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229926.peg.2158 CDS AEJM01000052.1 11826 14903 3 + 3078 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229926.peg.2159 CDS AEJM01000052.1 15593 15015 -2 - 579 Heat shock protein GrpE GroEL GroES;
Heat shock dnaK gene cluster extended;
Protein chaperones
fig|6666666.229926.peg.2160 CDS AEJM01000052.1 15561 15689 3 + 129 hypothetical protein - none -
fig|6666666.229926.peg.2161 CDS AEJM01000052.1 15734 16651 2 + 918 NAD kinase (EC 2.7.1.23) NAD and NADP cofactor biosynthesis global
fig|6666666.229926.peg.2162 CDS AEJM01000052.1 16725 18404 3 + 1680 DNA repair protein RecN DNA repair, bacterial
fig|6666666.229926.peg.2163 CDS AEJM01000052.1 19114 18467 -1 - 648 Outer membrane protein W precursor - none -
fig|6666666.229926.peg.2164 CDS AEJM01000052.1 19382 20140 2 + 759 Membrane protein involved in the export of O-antigen and teichoic acid - none -
fig|6666666.229926.peg.2165 CDS AEJM01000052.1 20146 20697 1 + 552 Intracellular septation protein IspA CBSS-211586.9.peg.2729;
Intracellular septation in Enterobacteria
fig|6666666.229926.peg.2166 CDS AEJM01000052.1 20701 21171 1 + 471 Acyl-CoA thioesterase YciA, involved in membrane biogenesis CBSS-211586.9.peg.2729;
Intracellular septation in Enterobacteria
fig|6666666.229926.peg.2167 CDS AEJM01000052.1 21174 21470 3 + 297 YciL protein Broadly distributed proteins not in subsystems;
CBSS-211586.9.peg.2729
fig|6666666.229926.peg.2168 CDS AEJM01000053.1 52 543 1 + 492 hypothetical protein - none -
fig|6666666.229926.rna.1 RNA AEJM01000003.1 39173 39101 -2 - 73 tRNA-Lys-TTT - none -
fig|6666666.229926.rna.2 RNA AEJM01000003.1 39312 39229 -3 - 84 tRNA-Leu-TAA - none -
fig|6666666.229926.rna.3 RNA AEJM01000003.1 39389 39317 -2 - 73 tRNA-Gly-GCC tRNAs
fig|6666666.229926.rna.4 RNA AEJM01000004.1 2327 2410 2 + 84 tRNA-Leu-CAG tRNAs
fig|6666666.229926.rna.5 RNA AEJM01000010.1 20812 20740 -1 - 73 tRNA-Gly-GCC tRNAs
fig|6666666.229926.rna.6 RNA AEJM01000016.1 83093 83011 -2 - 83 tRNA-Leu-CAA tRNAs
fig|6666666.229926.rna.7 RNA AEJM01000016.1 120906 120976 3 + 71 tRNA-Pseudo-AAC - none -
fig|6666666.229926.rna.8 RNA AEJM01000016.1 171588 171516 -3 - 73 tRNA-Asn-GTT - none -
fig|6666666.229926.rna.9 RNA AEJM01000016.1 187436 187509 2 + 74 tRNA-Met-CAT - none -
fig|6666666.229926.rna.10 RNA AEJM01000016.1 187518 187599 3 + 82 tRNA-Leu-TAG - none -
fig|6666666.229926.rna.11 RNA AEJM01000016.1 187632 187703 3 + 72 tRNA-Gln-TTG - none -
fig|6666666.229926.rna.12 RNA AEJM01000016.1 203526 203599 3 + 74 tRNA-Met-CAT - none -
fig|6666666.229926.rna.13 RNA AEJM01000016.1 461059 460986 -1 - 74 tRNA-Val-GAC tRNAs
fig|6666666.229926.rna.14 RNA AEJM01000019.1 21399 21485 3 + 87 tRNA-Ser-GGA tRNAs
fig|6666666.229926.rna.15 RNA AEJM01000019.1 43191 43119 -3 - 73 tRNA-Trp-CCA tRNAs
fig|6666666.229926.rna.16 RNA AEJM01000019.1 43302 43229 -3 - 74 tRNA-Asp-GTC - none -
fig|6666666.229926.rna.17 RNA AEJM01000022.1 5530 5448 -1 - 83 tRNA-Leu-GAG tRNAs
fig|6666666.229926.rna.18 RNA AEJM01000022.1 74589 74662 3 + 74 tRNA-Met-CAT - none -
fig|6666666.229926.rna.19 RNA AEJM01000023.1 27202 27292 1 + 91 tRNA-Ser-GCT - none -
fig|6666666.229926.rna.20 RNA AEJM01000023.1 27313 27386 1 + 74 tRNA-Arg-ACG tRNAs
fig|6666666.229926.rna.21 RNA AEJM01000023.1 27444 27517 3 + 74 tRNA-Arg-ACG tRNAs
fig|6666666.229926.rna.22 RNA AEJM01000024.1 25761 25833 3 + 73 tRNA-Lys-TTT - none -
fig|6666666.229926.rna.23 RNA AEJM01000024.1 25861 25934 1 + 74 tRNA-Lys-CTT - none -
fig|6666666.229926.rna.24 RNA AEJM01000024.1 81849 81922 3 + 74 tRNA-Asp-GTC - none -
fig|6666666.229926.rna.25 RNA AEJM01000024.1 81948 82021 3 + 74 tRNA-Asp-GTC - none -
fig|6666666.229926.rna.26 RNA AEJM01000026.1 15125 15197 2 + 73 tRNA-Thr-TGT - none -
fig|6666666.229926.rna.27 RNA AEJM01000026.1 15231 15312 3 + 82 tRNA-Tyr-GTA - none -
fig|6666666.229926.rna.28 RNA AEJM01000026.1 15356 15427 2 + 72 tRNA-Gly-TCC - none -
fig|6666666.229926.rna.29 RNA AEJM01000026.1 15434 15506 2 + 73 tRNA-Thr-GGT - none -
fig|6666666.229926.rna.30 RNA AEJM01000030.1 24 97 3 + 74 tRNA-Ile-GAT - none -
fig|6666666.229926.rna.31 RNA AEJM01000030.1 150 222 3 + 73 tRNA-Ala-TGC - none -
fig|6666666.229926.rna.32 RNA AEJM01000033.1 185 3227 2 + 3043 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA - none -
fig|6666666.229926.rna.33 RNA AEJM01000033.1 3484 3597 1 + 114 5S RNA - none -
fig|6666666.229926.rna.34 RNA AEJM01000034.1 1602 51 -3 - 1552 Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA - none -
fig|6666666.229926.rna.35 RNA AEJM01000036.1 110045 109973 -2 - 73 tRNA-Val-TAC - none -
fig|6666666.229926.rna.36 RNA AEJM01000036.1 110148 110076 -3 - 73 tRNA-Val-TAC - none -
fig|6666666.229926.rna.37 RNA AEJM01000036.1 110262 110190 -3 - 73 tRNA-Val-TAC - none -
fig|6666666.229926.rna.38 RNA AEJM01000036.1 112072 112144 1 + 73 tRNA-Ala-GGC tRNAs
fig|6666666.229926.rna.39 RNA AEJM01000038.1 17737 17810 1 + 74 tRNA-Arg-CCG tRNAs
fig|6666666.229926.rna.40 RNA AEJM01000038.1 17851 17923 1 + 73 tRNA-His-GTG - none -
fig|6666666.229926.rna.41 RNA AEJM01000038.1 17929 18002 1 + 74 tRNA-Pro-TGG - none -
fig|6666666.229926.rna.42 RNA AEJM01000041.1 9740 9813 2 + 74 tRNA-Met-CAT - none -
fig|6666666.229926.rna.43 RNA AEJM01000041.1 23115 23045 -3 - 71 tRNA-Cys-GCA tRNAs
fig|6666666.229926.rna.44 RNA AEJM01000041.1 23199 23127 -3 - 73 tRNA-Gly-GCC tRNAs
fig|6666666.229926.rna.45 RNA AEJM01000041.1 30583 30669 1 + 87 tRNA-Ser-TGA - none -
fig|6666666.229926.rna.46 RNA AEJM01000047.1 1005 915 -3 - 91 tRNA-SeC(p)-TCA - none -
fig|6666666.229926.rna.47 RNA AEJM01000048.1 2042 1969 -2 - 74 tRNA-Arg-TCT - none -
fig|6666666.229926.rna.48 RNA AEJM01000048.1 2152 2079 -1 - 74 tRNA-Pro-TGG - none -
fig|6666666.229926.rna.49 RNA AEJM01000048.1 30874 30946 1 + 73 tRNA-Phe-GAA tRNAs
fig|6666666.229926.rna.50 RNA AEJM01000048.1 30954 31026 3 + 73 tRNA-Asn-GTT - none -