fig|6666666.229933.peg.1 CDS AJMF02000001.1 1771 137 -1 - 1635 CTP synthase (EC 6.3.4.2) CTP synthase (EC 6.3.4.2) cluster;
pyrimidine conversions
fig|6666666.229933.peg.2 CDS AJMF02000001.1 1885 3300 1 + 1416 Branched-chain amino acid transport system carrier protein - none -
fig|6666666.229933.peg.3 CDS AJMF02000001.1 3410 3610 2 + 201 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) / Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) Riboflavin synthesis cluster
fig|6666666.229933.peg.4 CDS AJMF02000001.1 4381 3797 -1 - 585 NfuA Fe-S protein maturation Biotin biosynthesis Experimental;
DNA uptake cluster
fig|6666666.229933.peg.5 CDS AJMF02000001.1 5184 4498 -3 - 687 Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy Biotin biosynthesis Experimental;
Biotin synthesis cluster;
CBSS-216591.1.peg.168
fig|6666666.229933.peg.6 CDS AJMF02000001.1 5330 6142 2 + 813 HMP-PP hydrolase (pyridoxal phosphatase) Cof, detected in genetic screen for thiamin metabolic genes (PMID:15292217) - none -
fig|6666666.229933.peg.7 CDS AJMF02000001.1 6326 7438 2 + 1113 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch;
Threonine and Homoserine Biosynthesis
fig|6666666.229933.peg.8 CDS AJMF02000001.1 8092 7511 -1 - 582 Late competence protein ComEA, DNA receptor - none -
fig|6666666.229933.peg.9 CDS AJMF02000001.1 8357 10927 2 + 2571 ClpB protein Protein chaperones;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229933.peg.10 CDS AJMF02000001.1 11056 10937 -1 - 120 hypothetical protein - none -
fig|6666666.229933.peg.11 CDS AJMF02000001.1 11529 11029 -3 - 501 hypothetical protein - none -
fig|6666666.229933.peg.12 CDS AJMF02000001.1 11712 12740 3 + 1029 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) - none -
fig|6666666.229933.peg.13 CDS AJMF02000001.1 12740 12919 2 + 180 hypothetical protein - none -
fig|6666666.229933.peg.14 CDS AJMF02000001.1 12998 13822 2 + 825 Diaminopimelate epimerase (EC 5.1.1.7) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229933.peg.15 CDS AJMF02000001.1 13832 14722 2 + 891 Tyrosine recombinase XerC - none -
fig|6666666.229933.peg.16 CDS AJMF02000001.1 14736 15449 3 + 714 Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5@1-phosphoribitylamino)uracil phosphatase Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants
fig|6666666.229933.peg.17 CDS AJMF02000001.1 15975 15550 -3 - 426 Excinuclease ATPase subunit - none -
fig|6666666.229933.peg.18 CDS AJMF02000001.1 16003 16326 1 + 324 hypothetical protein - none -
fig|6666666.229933.peg.19 CDS AJMF02000001.1 16356 17099 3 + 744 3-oxoacyl-[ACP] synthase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229933.peg.20 CDS AJMF02000001.1 17084 17872 2 + 789 FIG018329: 1-acyl-sn-glycerol-3-phosphate acyltransferase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229933.peg.21 CDS AJMF02000001.1 17850 18113 3 + 264 Acyl carrier protein (ACP1) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229933.peg.22 CDS AJMF02000001.1 18116 18367 2 + 252 Acyl carrier protein (ACP2) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229933.peg.23 CDS AJMF02000001.1 18367 20034 1 + 1668 FIGfam138462: Acyl-CoA synthetase, AMP-(fatty) acid ligase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229933.peg.24 CDS AJMF02000001.1 20059 20604 1 + 546 FIG017861: hypothetical protein Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229933.peg.25 CDS AJMF02000001.1 20601 21962 3 + 1362 FIGfam138462: Acyl-CoA synthetase, AMP-(fatty) acid ligase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229933.peg.26 CDS AJMF02000001.1 21962 22684 2 + 723 FIG143263: Glycosyl transferase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229933.peg.27 CDS AJMF02000001.1 22681 23607 1 + 927 Lysophospholipid acyltransferase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229933.peg.28 CDS AJMF02000001.1 23604 24050 3 + 447 FIG002571: 4-hydroxybenzoyl-CoA thioesterase domain protein Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229933.peg.29 CDS AJMF02000001.1 24047 24631 2 + 585 FIG027190: Putative transmembrane protein Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229933.peg.30 CDS AJMF02000001.1 24638 26911 2 + 2274 FIG021862: membrane protein, exporter Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229933.peg.31 CDS AJMF02000001.1 27041 27520 2 + 480 FIG085779: Lipoprotein Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229933.peg.32 CDS AJMF02000001.1 27529 28752 1 + 1224 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) FabV like Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229933.peg.33 CDS AJMF02000001.1 28745 29188 2 + 444 3-hydroxydecanoyl-[ACP] dehydratase (EC 4.2.1.60) Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229933.peg.34 CDS AJMF02000001.1 29238 29966 3 + 729 3-oxoacyl-[ACP] reductase (EC 1.1.1.100) Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229933.peg.35 CDS AJMF02000001.1 29986 31230 1 + 1245 FIG138576: 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229933.peg.36 CDS AJMF02000001.1 33095 31641 -2 - 1455 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) D-gluconate and ketogluconates metabolism;
Pentose phosphate pathway
fig|6666666.229933.peg.37 CDS AJMF02000001.1 33116 33262 2 + 147 hypothetical protein - none -
fig|6666666.229933.peg.38 CDS AJMF02000001.1 34109 33651 -2 - 459 Uncharacterized virulence-associated protein D - none -
fig|6666666.229933.peg.39 CDS AJMF02000001.1 34443 34189 -3 - 255 Glutaredoxin-related protein Glutaredoxins
fig|6666666.229933.peg.40 CDS AJMF02000001.1 35073 34456 -3 - 618 Aspartate racemase (EC 5.1.1.13) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229933.peg.41 CDS AJMF02000001.1 35693 35430 -2 - 264 hypothetical protein - none -
fig|6666666.229933.peg.42 CDS AJMF02000001.1 36501 35803 -3 - 699 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type Entner-Doudoroff Pathway;
Pentose phosphate pathway
fig|6666666.229933.peg.43 CDS AJMF02000001.1 38238 36754 -3 - 1485 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) Entner-Doudoroff Pathway;
Pentose phosphate pathway
fig|6666666.229933.peg.44 CDS AJMF02000001.1 39129 38320 -3 - 810 3@1(2@1),5@1-bisphosphate nucleotidase (EC 3.1.3.7) - none -
fig|6666666.229933.peg.45 CDS AJMF02000001.1 39595 39167 -1 - 429 hypothetical protein - none -
fig|6666666.229933.peg.46 CDS AJMF02000001.1 41738 39657 -2 - 2082 oligopeptide transporter - none -
fig|6666666.229933.peg.47 CDS AJMF02000001.1 42032 42658 2 + 627 membrane protein ykgB - none -
fig|6666666.229933.peg.48 CDS AJMF02000001.1 42729 43610 3 + 882 Transcriptional regulator, AraC family - none -
fig|6666666.229933.peg.49 CDS AJMF02000001.1 44205 43615 -3 - 591 ADP compounds hydrolase NudE (EC 3.6.1.-) Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229933.peg.50 CDS AJMF02000001.1 44244 44465 3 + 222 FIG001957: putative hydrolase CBSS-584.1.peg.3382
fig|6666666.229933.peg.51 CDS AJMF02000001.1 44481 44903 3 + 423 FIG001957: putative hydrolase CBSS-584.1.peg.3382
fig|6666666.229933.peg.52 CDS AJMF02000001.1 44916 45332 3 + 417 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) CBSS-584.1.peg.3382;
Cell division-ribosomal stress proteins cluster;
DNA replication cluster 1;
Heat shock dnaK gene cluster extended
fig|6666666.229933.peg.53 CDS AJMF02000001.1 45400 46272 1 + 873 33 kDa chaperonin (Heat shock protein 33) (HSP33) CBSS-584.1.peg.3382
fig|6666666.229933.peg.54 CDS AJMF02000001.1 46675 46899 1 + 225 Twin-arginine translocation protein TatA Cluster-based Subsystem Grouping Hypotheticals - perhaps Proteosome Related;
Twin-arginine translocation system
fig|6666666.229933.peg.55 CDS AJMF02000001.1 46903 47565 1 + 663 Twin-arginine translocation protein TatB Twin-arginine translocation system
fig|6666666.229933.peg.56 CDS AJMF02000001.1 47603 48367 2 + 765 Twin-arginine translocation protein TatC Cluster-based Subsystem Grouping Hypotheticals - perhaps Proteosome Related;
Twin-arginine translocation system
fig|6666666.229933.peg.57 CDS AJMF02000001.1 48386 49408 2 + 1023 Porphobilinogen synthase (EC 4.2.1.24) Heme and Siroheme Biosynthesis
fig|6666666.229933.peg.58 CDS AJMF02000001.1 51701 49620 -2 - 2082 Glycyl-tRNA synthetase beta chain (EC 6.1.1.14) Glycyl-tRNA synthetase;
Glycyl-tRNA synthetase containing cluster;
tRNA aminoacylation, Gly
fig|6666666.229933.peg.59 CDS AJMF02000001.1 52487 51783 -2 - 705 hypothetical protein - none -
fig|6666666.229933.peg.60 CDS AJMF02000001.1 52868 52578 -2 - 291 ISSo9, nucleotidyltransferase domain protein - none -
fig|6666666.229933.peg.61 CDS AJMF02000001.1 53295 53035 -3 - 261 Glutaredoxin-related protein Glutaredoxins
fig|6666666.229933.peg.62 CDS AJMF02000001.1 54250 53345 -1 - 906 Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14) Glycyl-tRNA synthetase;
Glycyl-tRNA synthetase containing cluster;
tRNA aminoacylation, Gly
fig|6666666.229933.peg.63 CDS AJMF02000001.1 54603 54442 -3 - 162 Ferredoxin-type protein NapF (periplasmic nitrate reductase) - none -
fig|6666666.229933.peg.64 CDS AJMF02000001.1 55231 54617 -1 - 615 Putative oxidoreductase component of anaerobic dehydrogenases; Functional role page for Chaperone protein TorD - none -
fig|6666666.229933.peg.65 CDS AJMF02000001.1 56118 55279 -3 - 840 Anaerobic dimethyl sulfoxide reductase chain C (EC 1.8.5.3) - none -
fig|6666666.229933.peg.66 CDS AJMF02000001.1 56737 56120 -1 - 618 Anaerobic dimethyl sulfoxide reductase chain B (EC 1.8.5.3) - none -
fig|6666666.229933.peg.67 CDS AJMF02000001.1 58439 56748 -2 - 1692 Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.5.3) - none -
fig|6666666.229933.peg.68 CDS AJMF02000001.1 58723 58436 -1 - 288 Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-) Anaerobic respiratory reductases
fig|6666666.229933.peg.69 CDS AJMF02000001.1 58998 58858 -3 - 141 hypothetical protein - none -
fig|6666666.229933.peg.70 CDS AJMF02000001.1 59932 59783 -1 - 150 hypothetical protein - none -
fig|6666666.229933.peg.71 CDS AJMF02000001.1 60614 60429 -2 - 186 hypothetical protein - none -
fig|6666666.229933.peg.72 CDS AJMF02000001.1 60993 60844 -3 - 150 hypothetical protein - none -
fig|6666666.229933.peg.73 CDS AJMF02000001.1 61780 60968 -1 - 813 cell filamentation-like protein - none -
fig|6666666.229933.peg.74 CDS AJMF02000001.1 61940 61761 -2 - 180 hypothetical protein - none -
fig|6666666.229933.peg.75 CDS AJMF02000001.1 62089 61958 -1 - 132 hypothetical protein - none -
fig|6666666.229933.peg.76 CDS AJMF02000001.1 62523 62269 -3 - 255 hypothetical protein - none -
fig|6666666.229933.peg.77 CDS AJMF02000001.1 64139 63381 -2 - 759 Ferric siderophore transport system, periplasmic binding protein TonB Hemin transport system;
Ton and Tol transport systems
fig|6666666.229933.peg.78 CDS AJMF02000001.1 64595 64149 -2 - 447 Biopolymer transport protein ExbD/TolR Ton and Tol transport systems
fig|6666666.229933.peg.79 CDS AJMF02000001.1 65069 64599 -2 - 471 Ferric siderophore transport system, biopolymer transport protein ExbB Ton and Tol transport systems
fig|6666666.229933.peg.80 CDS AJMF02000001.1 66505 65243 -1 - 1263 Magnesium and cobalt efflux protein CorC CBSS-56780.10.peg.1536;
Copper homeostasis: copper tolerance;
Glycyl-tRNA synthetase containing cluster;
Magnesium transport;
tRNA-methylthiotransferase containing cluster
fig|6666666.229933.peg.81 CDS AJMF02000001.1 67374 66580 -3 - 795 FIG001154: CcsA-related protein - none -
fig|6666666.229933.peg.82 CDS AJMF02000001.1 67528 68907 1 + 1380 Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1) Bacterial signal recognition particle (SRP);
Universal GTPases
fig|6666666.229933.peg.83 CDS AJMF02000001.1 69193 69059 -1 - 135 hypothetical protein - none -
fig|6666666.229933.peg.84 CDS AJMF02000001.1 70376 69546 -2 - 831 S-formylglutathione hydrolase (EC 3.1.2.12) Glutathione-dependent pathway of formaldehyde detoxification
fig|6666666.229933.peg.85 CDS AJMF02000001.1 71515 70391 -1 - 1125 S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) Glutathione-dependent pathway of formaldehyde detoxification
fig|6666666.229933.peg.86 CDS AJMF02000001.1 71653 71925 1 + 273 Transcriptional regulator, MerR family Cobalt-zinc-cadmium resistance
fig|6666666.229933.peg.87 CDS AJMF02000001.1 71929 72060 1 + 132 Transcriptional regulator, MerR family Cobalt-zinc-cadmium resistance
fig|6666666.229933.peg.88 CDS AJMF02000001.1 72923 72174 -2 - 750 Sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140) - none -
fig|6666666.229933.peg.89 CDS AJMF02000001.1 73176 72916 -3 - 261 hypothetical protein - none -
fig|6666666.229933.peg.90 CDS AJMF02000001.1 74512 73145 -1 - 1368 Adenylosuccinate lyase (EC 4.3.2.2) CBSS-354.1.peg.876;
Purine conversions
fig|6666666.229933.peg.91 CDS AJMF02000001.1 75147 74536 -3 - 612 FIG002903: a protein of unknown function perhaps involved in purine metabolism CBSS-354.1.peg.876
fig|6666666.229933.peg.92 CDS AJMF02000001.1 75260 75670 2 + 411 Copper metallochaperone, bacterial analog of Cox17 protein Biogenesis of cytochrome c oxidases
fig|6666666.229933.peg.93 CDS AJMF02000001.1 75809 76345 2 + 537 Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR De Novo Pyrimidine Synthesis;
De Novo Pyrimidine Synthesis;
pyrimidine conversions
fig|6666666.229933.peg.94 CDS AJMF02000001.1 76410 77342 3 + 933 Survival protein SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA) (EC 5.2.1.8) Lipopolysaccharide assembly;
Peptidyl-prolyl cis-trans isomerase;
Periplasmic Stress Response
fig|6666666.229933.peg.95 CDS AJMF02000001.1 77420 78283 2 + 864 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase (EC 2.1.1.182) RNA methylation;
Ribosome biogenesis bacterial
fig|6666666.229933.peg.96 CDS AJMF02000001.1 78299 79126 2 + 828 Bis(5@1-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) - none -
fig|6666666.229933.peg.97 CDS AJMF02000001.1 79217 79636 2 + 420 nucleotidyltransferase substrate binding protein, HI0074 family - none -
fig|6666666.229933.peg.98 CDS AJMF02000001.1 79620 79913 3 + 294 nucleotidyltransferase - none -
fig|6666666.229933.peg.99 CDS AJMF02000001.1 79941 80498 3 + 558 FIG00696423: hypothetical protein - none -
fig|6666666.229933.peg.100 CDS AJMF02000001.1 80453 80569 2 + 117 hypothetical protein - none -
fig|6666666.229933.peg.101 CDS AJMF02000001.1 80541 80711 3 + 171 hypothetical protein - none -
fig|6666666.229933.peg.102 CDS AJMF02000001.1 80689 83277 1 + 2589 Leucyl-tRNA synthetase (EC 6.1.1.4) CBSS-208964.1.peg.3988;
tRNA aminoacylation, Leu
fig|6666666.229933.peg.103 CDS AJMF02000001.1 83430 83302 -3 - 129 hypothetical protein - none -
fig|6666666.229933.peg.104 CDS AJMF02000001.1 83419 83922 1 + 504 LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B) CBSS-208964.1.peg.3988;
KDO2-Lipid A biosynthesis;
Lipopolysaccharide assembly
fig|6666666.229933.peg.105 CDS AJMF02000001.1 83922 84956 3 + 1035 DNA polymerase III delta subunit (EC 2.7.7.7) CBSS-208964.1.peg.3988
fig|6666666.229933.peg.106 CDS AJMF02000001.1 85852 85448 -1 - 405 Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-) Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229933.peg.107 CDS AJMF02000001.1 88691 85929 -2 - 2763 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) - none -
fig|6666666.229933.peg.108 CDS AJMF02000001.1 89018 88701 -2 - 318 hypothetical protein - none -
fig|6666666.229933.peg.109 CDS AJMF02000001.1 89110 89421 1 + 312 Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives DNA replication cluster 1
fig|6666666.229933.peg.110 CDS AJMF02000001.1 89449 89952 1 + 504 Mercuric resistance operon regulatory protein - none -
fig|6666666.229933.peg.111 CDS AJMF02000002.1 888 1334 3 + 447 Mobile element protein - none -
fig|6666666.229933.peg.112 CDS AJMF02000002.1 1596 2279 3 + 684 Peptidyl-tRNA hydrolase (EC 3.1.1.29) Cell division-ribosomal stress proteins cluster;
Sporulation-associated proteins with broader functions;
Transcription repair cluster;
Translation termination factors bacterial
fig|6666666.229933.peg.113 CDS AJMF02000002.1 2468 3559 2 + 1092 GTP-binding and nucleic acid-binding protein YchF Universal GTPases
fig|6666666.229933.peg.114 CDS AJMF02000002.1 3868 4449 1 + 582 Hypothetical protein VC0266 (sugar utilization related?) VC0266
fig|6666666.229933.peg.115 CDS AJMF02000002.1 4525 4671 1 + 147 hypothetical protein - none -
fig|6666666.229933.peg.116 CDS AJMF02000002.1 4813 4926 1 + 114 hypothetical protein - none -
fig|6666666.229933.peg.117 CDS AJMF02000002.1 5838 4891 -3 - 948 Cysteine synthase (EC 2.5.1.47) Cysteine Biosynthesis;
Methionine Biosynthesis
fig|6666666.229933.peg.118 CDS AJMF02000002.1 6763 5939 -1 - 825 Sulfate transporter, CysZ-type Cysteine Biosynthesis
fig|6666666.229933.peg.119 CDS AJMF02000002.1 6903 7940 3 + 1038 Cell division protein ZipA Bacterial Cytoskeleton
fig|6666666.229933.peg.120 CDS AJMF02000002.1 8042 10054 2 + 2013 DNA ligase (EC 6.5.1.2) DNA Repair Base Excision
fig|6666666.229933.peg.121 CDS AJMF02000002.1 10556 10122 -2 - 435 Thymidine kinase (EC 2.7.1.21) pyrimidine conversions
fig|6666666.229933.peg.122 CDS AJMF02000002.1 10937 10704 -2 - 234 unknown - none -
fig|6666666.229933.peg.123 CDS AJMF02000002.1 12030 11002 -3 - 1029 TsaD/Kae1/Qri7 protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Macromolecular synthesis operon;
YgjD and YeaZ;
YrdC-YciO-Sua5 protein family
fig|6666666.229933.peg.124 CDS AJMF02000002.1 12220 12053 -1 - 168 hypothetical protein - none -
fig|6666666.229933.peg.125 CDS AJMF02000002.1 12255 12470 3 + 216 SSU ribosomal protein S21p Macromolecular synthesis operon;
Ribosome SSU bacterial
fig|6666666.229933.peg.126 CDS AJMF02000002.1 12592 14349 1 + 1758 DNA primase (EC 2.7.7.-) CBSS-349161.4.peg.2417;
Macromolecular synthesis operon
fig|6666666.229933.peg.127 CDS AJMF02000002.1 14425 16275 1 + 1851 RNA polymerase sigma factor RpoD CBSS-349161.4.peg.2417;
Macromolecular synthesis operon;
Transcription initiation, bacterial sigma factors
fig|6666666.229933.peg.128 CDS AJMF02000002.1 18754 16337 -1 - 2418 ATP-dependent protease La (EC 3.4.21.53) Type I Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229933.peg.129 CDS AJMF02000002.1 19185 20939 3 + 1755 Putative sulfate permease - none -
fig|6666666.229933.peg.130 CDS AJMF02000002.1 21756 20965 -3 - 792 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229933.peg.131 CDS AJMF02000002.1 22842 22285 -3 - 558 hypothetical protein - none -
fig|6666666.229933.peg.132 CDS AJMF02000002.1 24064 22880 -1 - 1185 Mannonate dehydratase (EC 4.2.1.8) D-Galacturonate and D-Glucuronate Utilization
fig|6666666.229933.peg.133 CDS AJMF02000002.1 24839 24084 -2 - 756 Hexuronate utilization operon transcriptional repressor ExuR D-Galacturonate and D-Glucuronate Utilization
fig|6666666.229933.peg.134 CDS AJMF02000002.1 27229 24854 -1 - 2376 Alpha-glucosidase (EC 3.2.1.20) D-Galacturonate and D-Glucuronate Utilization;
Maltose and Maltodextrin Utilization
fig|6666666.229933.peg.135 CDS AJMF02000002.1 28554 27253 -3 - 1302 TRAP-type C4-dicarboxylate transport system, large permease component TRAP Transporter collection
fig|6666666.229933.peg.136 CDS AJMF02000002.1 29267 30259 2 + 993 TRAP-type C4-dicarboxylate transport system, periplasmic component TRAP Transporter collection
fig|6666666.229933.peg.137 CDS AJMF02000002.1 30314 31258 2 + 945 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) D-Galacturonate and D-Glucuronate Utilization;
D-gluconate and ketogluconates metabolism;
Entner-Doudoroff Pathway
fig|6666666.229933.peg.138 CDS AJMF02000002.1 31270 32115 1 + 846 D-mannonate oxidoreductase (EC 1.1.1.57) D-Galacturonate and D-Glucuronate Utilization
fig|6666666.229933.peg.139 CDS AJMF02000002.1 32125 33528 1 + 1404 Uronate isomerase (EC 5.3.1.12) D-Galacturonate and D-Glucuronate Utilization
fig|6666666.229933.peg.140 CDS AJMF02000002.1 33537 34178 3 + 642 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) D-Galacturonate and D-Glucuronate Utilization;
Entner-Doudoroff Pathway
fig|6666666.229933.peg.141 CDS AJMF02000002.1 35310 34264 -3 - 1047 iron chelatin ABC transporter periplasmic-binding protein - none -
fig|6666666.229933.peg.142 CDS AJMF02000002.1 35611 35492 -1 - 120 hypothetical protein - none -
fig|6666666.229933.peg.143 CDS AJMF02000002.1 36852 35620 -3 - 1233 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) Glycine and Serine Utilization;
Pyridoxin (Vitamin B6) Biosynthesis;
Serine Biosynthesis
fig|6666666.229933.peg.144 CDS AJMF02000002.1 37527 36871 -3 - 657 Ribose 5-phosphate isomerase A (EC 5.3.1.6) D-ribose utilization;
Pentose phosphate pathway
fig|6666666.229933.peg.145 CDS AJMF02000002.1 38795 37626 -2 - 1170 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB CBSS-630.2.peg.3360;
Heat shock dnaK gene cluster extended;
Heme and Siroheme Biosynthesis;
Queuosine-Archaeosine Biosynthesis
fig|6666666.229933.peg.146 CDS AJMF02000002.1 39118 38795 -1 - 324 PlcB, ORFX, ORFP, ORFB, ORFA, ldh gene - none -
fig|6666666.229933.peg.147 CDS AJMF02000002.1 39837 39157 -3 - 681 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) Heat shock dnaK gene cluster extended;
Housecleaning nucleoside triphosphate pyrophosphatases
fig|6666666.229933.peg.148 CDS AJMF02000002.1 40192 39863 -1 - 330 DNA uptake protein and related DNA-binding proteins - none -
fig|6666666.229933.peg.149 CDS AJMF02000002.1 40194 40349 3 + 156 hypothetical protein - none -
fig|6666666.229933.peg.150 CDS AJMF02000002.1 41369 40482 -2 - 888 HflC protein Hfl operon;
Scaffold proteins for [4Fe-4S] cluster assembly (MRP family)
fig|6666666.229933.peg.151 CDS AJMF02000002.1 42622 41369 -1 - 1254 HflK protein Hfl operon;
Scaffold proteins for [4Fe-4S] cluster assembly (MRP family)
fig|6666666.229933.peg.152 CDS AJMF02000002.1 43461 42718 -3 - 744 4@1-phosphopantetheinyl transferase (EC 2.7.8.-) Fatty Acid Biosynthesis FASII
fig|6666666.229933.peg.153 CDS AJMF02000002.1 44770 43496 -1 - 1275 Threonine synthase (EC 4.2.3.1) Threonine and Homoserine Biosynthesis
fig|6666666.229933.peg.154 CDS AJMF02000002.1 45266 44826 -2 - 441 hypothetical protein - none -
fig|6666666.229933.peg.155 CDS AJMF02000002.1 46238 45294 -2 - 945 Homoserine kinase (EC 2.7.1.39) CBSS-269482.1.peg.1294;
Methionine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229933.peg.156 CDS AJMF02000002.1 48698 46251 -2 - 2448 Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) CBSS-216591.1.peg.168;
Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch;
Methionine Biosynthesis;
Threonine and Homoserine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229933.peg.157 CDS AJMF02000002.1 48918 48787 -3 - 132 hypothetical protein - none -
fig|6666666.229933.peg.158 CDS AJMF02000002.1 49057 50445 1 + 1389 Nicotinamide phosphoribosyltransferase (EC 2.4.2.12) NAD and NADP cofactor biosynthesis global
fig|6666666.229933.peg.159 CDS AJMF02000002.1 50438 51133 2 + 696 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC A Hypothetical Protein Related to Proline Metabolism;
CBSS-630.2.peg.3360
fig|6666666.229933.peg.160 CDS AJMF02000002.1 52022 51186 -2 - 837 L-proline glycine betaine ABC transport system permease protein ProV (TC 3.A.1.12.1) Choline and Betaine Uptake and Betaine Biosynthesis
fig|6666666.229933.peg.161 CDS AJMF02000002.1 53848 52337 -1 - 1512 L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1) / Osmotic adaptation Choline and Betaine Uptake and Betaine Biosynthesis
fig|6666666.229933.peg.162 CDS AJMF02000002.1 54141 53983 -3 - 159 Outer membrane protein NlpB, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and YfgL); Lipoprotein-34 precursor Lipopolysaccharide assembly
fig|6666666.229933.peg.163 CDS AJMF02000002.1 54976 54272 -1 - 705 Outer membrane protein NlpB, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and YfgL); Lipoprotein-34 precursor Lipopolysaccharide assembly
fig|6666666.229933.peg.164 CDS AJMF02000002.1 55983 55090 -3 - 894 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229933.peg.165 CDS AJMF02000002.1 56141 56605 2 + 465 Thiol peroxidase, Bcp-type (EC 1.11.1.15) CBSS-316057.3.peg.3521;
Thioredoxin-disulfide reductase
fig|6666666.229933.peg.166 CDS AJMF02000002.1 57952 56669 -1 - 1284 Immunoglobulin A1 protease / autotransporter domain, T5aSS type secretion Autotransporter proteins;
Autotransporter proteins
fig|6666666.229933.peg.167 CDS AJMF02000003.1 1564 491 -1 - 1074 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) - none -
fig|6666666.229933.peg.168 CDS AJMF02000003.1 1693 2976 1 + 1284 Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8) CBSS-196164.1.peg.461;
Heme and Siroheme Biosynthesis
fig|6666666.229933.peg.169 CDS AJMF02000003.1 5643 3052 -3 - 2592 [Protein-PII] uridylyltransferase (EC 2.7.7.59) Ammonia assimilation;
CBSS-312309.3.peg.1965
fig|6666666.229933.peg.170 CDS AJMF02000003.1 6509 5709 -2 - 801 Methionine aminopeptidase (EC 3.4.11.18) CBSS-312309.3.peg.1965;
Translation termination factors bacterial
fig|6666666.229933.peg.171 CDS AJMF02000003.1 6643 6984 1 + 342 probable iron binding protein from the HesB_IscA_SufA family - none -
fig|6666666.229933.peg.172 CDS AJMF02000003.1 6986 7201 2 + 216 hypothetical protein - none -
fig|6666666.229933.peg.173 CDS AJMF02000003.1 7247 9640 2 + 2394 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) DNA uptake cluster;
Peptidoglycan Biosynthesis;
Type IV pilus
fig|6666666.229933.peg.174 CDS AJMF02000003.1 9939 11846 3 + 1908 High-affinity Fe2+/Pb2+ permease precursor Iron transport system including ABC transporter
fig|6666666.229933.peg.175 CDS AJMF02000003.1 11889 12410 3 + 522 Periplasmic protein p19 involved in high-affinity Fe2+ transport Iron transport system including ABC transporter
fig|6666666.229933.peg.176 CDS AJMF02000003.1 12549 13979 3 + 1431 Fe2+ ABC transporter, substrate binding protein Iron transport system including ABC transporter
fig|6666666.229933.peg.177 CDS AJMF02000003.1 13982 15307 2 + 1326 Cell division protein FtsX Bacterial Cell Division
fig|6666666.229933.peg.178 CDS AJMF02000003.1 15318 16433 3 + 1116 Fe2+ ABC transporter, permease protein 2 Iron transport system including ABC transporter
fig|6666666.229933.peg.179 CDS AJMF02000003.1 16435 17106 1 + 672 Fe2+ ABC transporter, ATP-binding subunit Iron transport system including ABC transporter
fig|6666666.229933.peg.180 CDS AJMF02000003.1 17096 17587 2 + 492 Possible periplasmic thiredoxin Iron transport system including ABC transporter
fig|6666666.229933.peg.181 CDS AJMF02000003.1 17594 17905 2 + 312 Cytochrome C553 (soluble cytochrome f) Iron transport system including ABC transporter;
Soluble cytochromes and functionally related electron carriers
fig|6666666.229933.peg.182 CDS AJMF02000003.1 17994 18116 3 + 123 hypothetical protein - none -
fig|6666666.229933.peg.183 CDS AJMF02000003.1 18233 18859 2 + 627 Phosphoglycolate phosphatase (EC 3.1.3.18) 2-phosphoglycolate salvage;
Glycolate, glyoxylate interconversions
fig|6666666.229933.peg.184 CDS AJMF02000003.1 19061 18903 -2 - 159 hypothetical protein - none -
fig|6666666.229933.peg.185 CDS AJMF02000003.1 20237 19089 -2 - 1149 Mobile element protein - none -
fig|6666666.229933.peg.186 CDS AJMF02000003.1 21645 20335 -3 - 1311 putative inner membrane protein - none -
fig|6666666.229933.peg.187 CDS AJMF02000003.1 25744 21695 -1 - 4050 HrpA-like helicases - none -
fig|6666666.229933.peg.188 CDS AJMF02000003.1 26130 25741 -3 - 390 COG2363 - none -
fig|6666666.229933.peg.189 CDS AJMF02000003.1 26583 26131 -3 - 453 putative membrane protein - none -
fig|6666666.229933.peg.190 CDS AJMF02000003.1 26585 26698 2 + 114 hypothetical protein - none -
fig|6666666.229933.peg.191 CDS AJMF02000003.1 27037 26708 -1 - 330 Glutaredoxin-related protein Glutaredoxins
fig|6666666.229933.peg.192 CDS AJMF02000003.1 28419 27379 -3 - 1041 Outer membrane protein A precursor Osmoregulation
fig|6666666.229933.peg.193 CDS AJMF02000003.1 28904 31957 2 + 3054 Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD Glycolate, glyoxylate interconversions
fig|6666666.229933.peg.194 CDS AJMF02000003.1 31967 32389 2 + 423 FIG017415: ydiI hotdog fold superfamily - none -
fig|6666666.229933.peg.195 CDS AJMF02000003.1 32382 33446 3 + 1065 Ferrochelatase, protoheme ferro-lyase (EC 4.99.1.1) Heme and Siroheme Biosynthesis
fig|6666666.229933.peg.196 CDS AJMF02000003.1 33487 33987 1 + 501 Thiol peroxidase, Tpx-type (EC 1.11.1.15) Thioredoxin-disulfide reductase
fig|6666666.229933.peg.197 CDS AJMF02000003.1 35337 34192 -3 - 1146 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism
fig|6666666.229933.peg.198 CDS AJMF02000003.1 36196 35393 -1 - 804 Glucosamine-6-phosphate deaminase (EC 3.5.99.6) Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism
fig|6666666.229933.peg.199 CDS AJMF02000003.1 37229 36351 -2 - 879 N-acetylneuraminate lyase (EC 4.1.3.3) Sialic Acid Metabolism
fig|6666666.229933.peg.200 CDS AJMF02000003.1 38108 37239 -2 - 870 Sialic acid utilization regulator, RpiR family Sialic Acid Metabolism
fig|6666666.229933.peg.201 CDS AJMF02000003.1 39002 38118 -2 - 885 N-acetylmannosamine kinase (EC 2.7.1.60) Sialic Acid Metabolism
fig|6666666.229933.peg.202 CDS AJMF02000003.1 39720 39019 -3 - 702 N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9) Sialic Acid Metabolism
fig|6666666.229933.peg.203 CDS AJMF02000003.1 39962 40948 2 + 987 TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein Sialic Acid Metabolism
fig|6666666.229933.peg.204 CDS AJMF02000003.1 41012 42862 2 + 1851 TRAP-type transport system, large permease component, predicted N-acetylneuraminate transporter / TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229933.peg.205 CDS AJMF02000003.1 43621 44127 1 + 507 Sialic acid-induced transmembrane protein YjhT(NanM), possible mutarotase Sialic Acid Metabolism
fig|6666666.229933.peg.206 CDS AJMF02000003.1 44376 45842 3 + 1467 PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69) Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism;
Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229933.peg.207 CDS AJMF02000003.1 47588 46518 -2 - 1071 Outer membrane protein A precursor Osmoregulation
fig|6666666.229933.peg.208 CDS AJMF02000003.1 49860 47818 -3 - 2043 Excinuclease ABC subunit B DNA repair, UvrABC system
fig|6666666.229933.peg.209 CDS AJMF02000003.1 51503 50472 -2 - 1032 putative membrane protein - none -
fig|6666666.229933.peg.210 CDS AJMF02000003.1 52192 51518 -1 - 675 putative exported protein - none -
fig|6666666.229933.peg.211 CDS AJMF02000003.1 52530 54242 3 + 1713 ABC transporter ATP-binding protein - none -
fig|6666666.229933.peg.212 CDS AJMF02000003.1 55233 54346 -3 - 888 putative adhesin/invasin - none -
fig|6666666.229933.peg.213 CDS AJMF02000003.1 55736 57634 2 + 1899 Topoisomerase IV subunit B (EC 5.99.1.-) DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.229933.peg.214 CDS AJMF02000003.1 58042 58218 1 + 177 hypothetical protein - none -
fig|6666666.229933.peg.215 CDS AJMF02000003.1 58226 60481 2 + 2256 Topoisomerase IV subunit A (EC 5.99.1.-) DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.229933.peg.216 CDS AJMF02000003.1 60765 61376 3 + 612 Glutathione S-transferase (EC 2.5.1.18) Glutathione: Non-redox reactions
fig|6666666.229933.peg.217 CDS AJMF02000003.1 62137 61427 -1 - 711 hypothetical protein - none -
fig|6666666.229933.peg.218 CDS AJMF02000003.1 62820 62143 -3 - 678 FIG00904286: hypothetical protein - none -
fig|6666666.229933.peg.219 CDS AJMF02000003.1 62961 63314 3 + 354 Bona fide RidA/YjgF/TdcF/RutC subgroup - none -
fig|6666666.229933.peg.220 CDS AJMF02000003.1 64228 63356 -1 - 873 hypothetical protein - none -
fig|6666666.229933.peg.221 CDS AJMF02000005.1 42 1184 3 + 1143 Translation elongation factor Tu Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Translation elongation factors bacterial;
Universal GTPases
fig|6666666.229933.peg.222 CDS AJMF02000007.1 368 111 -2 - 258 SSU ribosomal protein S17p (S11e) Ribosome SSU bacterial
fig|6666666.229933.peg.223 CDS AJMF02000007.1 559 368 -1 - 192 LSU ribosomal protein L29p (L35e) Ribosome LSU bacterial
fig|6666666.229933.peg.224 CDS AJMF02000007.1 969 559 -3 - 411 LSU ribosomal protein L16p (L10e) Ribosome LSU bacterial
fig|6666666.229933.peg.225 CDS AJMF02000007.1 1690 983 -1 - 708 SSU ribosomal protein S3p (S3e) Ribosome SSU bacterial
fig|6666666.229933.peg.226 CDS AJMF02000007.1 2039 1707 -2 - 333 LSU ribosomal protein L22p (L17e) Ribosome LSU bacterial
fig|6666666.229933.peg.227 CDS AJMF02000007.1 2259 2050 -3 - 210 SSU ribosomal protein S19p (S15e) Ribosome SSU bacterial
fig|6666666.229933.peg.228 CDS AJMF02000007.1 3172 2351 -1 - 822 LSU ribosomal protein L2p (L8e) Ribosome LSU bacterial
fig|6666666.229933.peg.229 CDS AJMF02000007.1 3495 3193 -3 - 303 LSU ribosomal protein L23p (L23Ae) Ribosome LSU bacterial
fig|6666666.229933.peg.230 CDS AJMF02000007.1 4094 3492 -2 - 603 LSU ribosomal protein L4p (L1e) Ribosome LSU bacterial
fig|6666666.229933.peg.231 CDS AJMF02000007.1 4736 4110 -2 - 627 LSU ribosomal protein L3p (L3e) Ribosome LSU bacterial
fig|6666666.229933.peg.232 CDS AJMF02000007.1 5064 4753 -3 - 312 SSU ribosomal protein S10p (S20e) Ribosome SSU bacterial
fig|6666666.229933.peg.233 CDS AJMF02000007.1 6210 5314 -3 - 897 Transcriptional regulators, LysR family - none -
fig|6666666.229933.peg.234 CDS AJMF02000007.1 6547 6966 1 + 420 Acetyl-CoA:acetoacetyl-CoA transferase, alpha subunit (EC 2.8.3.8) - none -
fig|6666666.229933.peg.235 CDS AJMF02000007.1 6941 7138 2 + 198 Acetyl-CoA:acetoacetyl-CoA transferase, alpha subunit (EC 2.8.3.8) - none -
fig|6666666.229933.peg.236 CDS AJMF02000007.1 7150 7815 1 + 666 Acetyl-CoA:acetoacetyl-CoA transferase, beta subunit (EC 2.8.3.8) - none -
fig|6666666.229933.peg.237 CDS AJMF02000007.1 7818 9161 3 + 1344 Short chain fatty acids transporter Polyhydroxybutyrate metabolism
fig|6666666.229933.peg.238 CDS AJMF02000007.1 9179 10360 2 + 1182 Acetyl-CoA acetyltransferase (EC 2.3.1.9) Butanol Biosynthesis;
Isoprenoid Biosynthesis;
Polyhydroxybutyrate metabolism
fig|6666666.229933.peg.239 CDS AJMF02000007.1 10925 10458 -2 - 468 Transcriptional regulator, AsnC family - none -
fig|6666666.229933.peg.240 CDS AJMF02000007.1 12401 11016 -2 - 1386 Arginine/ornithine antiporter ArcD Arginine Deiminase Pathway;
Arginine and Ornithine Degradation;
Polyamine Metabolism
fig|6666666.229933.peg.241 CDS AJMF02000007.1 13594 12662 -1 - 933 Carbamate kinase (EC 2.7.2.2) Arginine Deiminase Pathway;
Arginine and Ornithine Degradation;
Polyamine Metabolism
fig|6666666.229933.peg.242 CDS AJMF02000007.1 14608 13604 -1 - 1005 Ornithine carbamoyltransferase (EC 2.1.3.3) Arginine Deiminase Pathway;
Arginine and Ornithine Degradation
fig|6666666.229933.peg.243 CDS AJMF02000007.1 14851 16242 1 + 1392 Chloride channel protein - none -
fig|6666666.229933.peg.244 CDS AJMF02000007.1 16245 17228 3 + 984 tRNA dihydrouridine synthase A - none -
fig|6666666.229933.peg.245 CDS AJMF02000007.1 18276 17284 -3 - 993 Aspartate--ammonia ligase (EC 6.3.1.1) CBSS-262728.1.peg.1737;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229933.peg.246 CDS AJMF02000007.1 18442 18894 1 + 453 Regulatory protein AsnC CBSS-262728.1.peg.1737
fig|6666666.229933.peg.247 CDS AJMF02000007.1 18928 19686 1 + 759 Uridine phosphorylase (EC 2.4.2.3) pyrimidine conversions
fig|6666666.229933.peg.248 CDS AJMF02000007.1 20884 19823 -1 - 1062 Putative permease PerM (= YfgO) - none -
fig|6666666.229933.peg.249 CDS AJMF02000007.1 20958 21308 3 + 351 Arsenate reductase (EC 1.20.4.1) Anaerobic respiratory reductases;
Arsenic resistance;
Transcription repair cluster
fig|6666666.229933.peg.250 CDS AJMF02000007.1 21774 21412 -3 - 363 FIG00696564: hypothetical protein - none -
fig|6666666.229933.peg.251 CDS AJMF02000007.1 22009 21725 -1 - 285 hypothetical protein - none -
fig|6666666.229933.peg.252 CDS AJMF02000007.1 22218 23549 3 + 1332 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase Methylthiotransferases;
Ribosomal protein S12p Asp methylthiotransferase
fig|6666666.229933.peg.253 CDS AJMF02000007.1 23527 24078 1 + 552 Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48) LMPTP YfkJ cluster;
Protein deglycation
fig|6666666.229933.peg.254 CDS AJMF02000007.1 24205 24423 1 + 219 hypothetical protein - none -
fig|6666666.229933.peg.255 CDS AJMF02000007.1 25091 24495 -2 - 597 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) G3E family of P-loop GTPases (metallocenter biosynthesis);
Peptidyl-prolyl cis-trans isomerase;
Potassium homeostasis
fig|6666666.229933.peg.256 CDS AJMF02000007.1 25905 25186 -3 - 720 probable periplasmic protein NMA1059 - none -
fig|6666666.229933.peg.257 CDS AJMF02000007.1 26390 25956 -2 - 435 Ribonuclease E inhibitor RraB RNA processing and degradation, bacterial
fig|6666666.229933.peg.258 CDS AJMF02000007.1 26880 26485 -3 - 396 Large-conductance mechanosensitive channel Potassium homeostasis
fig|6666666.229933.peg.259 CDS AJMF02000007.1 28366 26990 -1 - 1377 Trk system potassium uptake protein TrkA Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Hyperosmotic potassium uptake;
Potassium homeostasis;
Potassium homeostasis
fig|6666666.229933.peg.260 CDS AJMF02000007.1 29745 28390 -3 - 1356 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) - none -
fig|6666666.229933.peg.261 CDS AJMF02000007.1 30704 29745 -2 - 960 Methionyl-tRNA formyltransferase (EC 2.1.2.9) Conserved gene cluster associated with Met-tRNA formyltransferase;
Translation initiation factors bacterial
fig|6666666.229933.peg.262 CDS AJMF02000007.1 31279 30767 -1 - 513 Peptide deformylase (EC 3.5.1.88) Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Translation termination factors bacterial
fig|6666666.229933.peg.263 CDS AJMF02000008.1 800 75 -2 - 726 Integral membrane protein TerC - none -
fig|6666666.229933.peg.264 CDS AJMF02000008.1 1533 865 -3 - 669 DNA mismatch repair endonuclease MutH DNA repair, bacterial
fig|6666666.229933.peg.265 CDS AJMF02000008.1 2069 1530 -2 - 540 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) DNA repair, bacterial
fig|6666666.229933.peg.266 CDS AJMF02000008.1 3576 2146 -3 - 1431 Long-chain fatty acid transport protein - none -
fig|6666666.229933.peg.267 CDS AJMF02000008.1 3779 4069 2 + 291 FIG00696346: hypothetical protein - none -
fig|6666666.229933.peg.268 CDS AJMF02000008.1 4556 5635 2 + 1080 glycosyl transferase, family 2 - none -
fig|6666666.229933.peg.269 CDS AJMF02000008.1 6928 5981 -1 - 948 Putative secretion ATPase - none -
fig|6666666.229933.peg.270 CDS AJMF02000008.1 8950 7679 -1 - 1272 UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7) CBSS-12149.1.peg.3301;
Peptidoglycan Biosynthesis;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229933.peg.271 CDS AJMF02000008.1 9224 8967 -2 - 258 YrbA protein Broadly distributed proteins not in subsystems;
CBSS-12149.1.peg.3301
fig|6666666.229933.peg.272 CDS AJMF02000008.1 9583 9224 -1 - 360 Uncharacterized protein YrbB CBSS-12149.1.peg.3301
fig|6666666.229933.peg.273 CDS AJMF02000008.1 10228 9587 -1 - 642 Uncharacterized ABC transporter, auxiliary component YrbC CBSS-12149.1.peg.3301;
Lipopolysaccharide assembly
fig|6666666.229933.peg.274 CDS AJMF02000008.1 10766 10257 -2 - 510 Uncharacterized ABC transporter, periplasmic component YrbD CBSS-12149.1.peg.3301;
Lipopolysaccharide assembly
fig|6666666.229933.peg.275 CDS AJMF02000008.1 11574 10789 -3 - 786 Uncharacterized ABC transporter, permease component YrbE CBSS-12149.1.peg.3301;
Lipopolysaccharide assembly
fig|6666666.229933.peg.276 CDS AJMF02000008.1 12365 11568 -2 - 798 Uncharacterized ABC transporter, ATP-binding protein YrbF CBSS-12149.1.peg.3301;
Lipopolysaccharide assembly
fig|6666666.229933.peg.277 CDS AJMF02000008.1 12649 13224 1 + 576 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters Lipopolysaccharide assembly
fig|6666666.229933.peg.278 CDS AJMF02000008.1 13205 13723 2 + 519 LptA, protein essential for LPS transport across the periplasm KDO2-Lipid A biosynthesis;
Lipopolysaccharide assembly
fig|6666666.229933.peg.279 CDS AJMF02000008.1 13729 14454 1 + 726 Lipopolysaccharide ABC transporter, ATP-binding protein LptB KDO2-Lipid A biosynthesis;
Lipopolysaccharide assembly
fig|6666666.229933.peg.280 CDS AJMF02000008.1 14458 14979 1 + 522 PTS IIA-like nitrogen-regulatory protein PtsN - none -
fig|6666666.229933.peg.281 CDS AJMF02000008.1 15007 15861 1 + 855 FIG000506: Predicted P-loop-containing kinase - none -
fig|6666666.229933.peg.282 CDS AJMF02000008.1 17201 15867 -2 - 1335 Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) DNA repair, bacterial;
Purine salvage cluster
fig|6666666.229933.peg.283 CDS AJMF02000008.1 18401 17208 -2 - 1194 FIG074102: hypothetical protein - none -
fig|6666666.229933.peg.284 CDS AJMF02000008.1 18727 18434 -1 - 294 UPF0125 protein yfjF - none -
fig|6666666.229933.peg.285 CDS AJMF02000008.1 19100 18720 -2 - 381 Putative oligoketide cyclase/lipid transport protein, similarity with yeast ubiquinone-binding protein YOL008W - none -
fig|6666666.229933.peg.286 CDS AJMF02000008.1 19221 19637 3 + 417 conserved hypothetical protein; possible membrane protein - none -
fig|6666666.229933.peg.287 CDS AJMF02000008.1 20735 19731 -2 - 1005 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis;
Pyridoxin (Vitamin B6) Biosynthesis
fig|6666666.229933.peg.288 CDS AJMF02000008.1 20964 20815 -3 - 150 hypothetical protein - none -
fig|6666666.229933.peg.289 CDS AJMF02000008.1 20977 21615 1 + 639 Guanylate kinase (EC 2.7.4.8) CBSS-323097.3.peg.2594;
Purine conversions
fig|6666666.229933.peg.290 CDS AJMF02000008.1 21673 21939 1 + 267 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) CBSS-176299.4.peg.1292;
RNA polymerase bacterial
fig|6666666.229933.peg.291 CDS AJMF02000008.1 21985 24111 1 + 2127 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II / Guanosine-3@1,5@1-bis(diphosphate) 3@1-pyrophosphohydrolase (EC 3.1.7.2) CBSS-176299.4.peg.1292;
CBSS-176299.4.peg.1292;
Stringent Response, (p)ppGpp metabolism;
Stringent Response, (p)ppGpp metabolism
fig|6666666.229933.peg.292 CDS AJMF02000008.1 24112 26193 1 + 2082 ATP-dependent DNA helicase RecG (EC 3.6.1.-) - none -
fig|6666666.229933.peg.293 CDS AJMF02000008.1 26186 26683 2 + 498 Chorismate--pyruvate lyase (EC 4.1.3.40) Ubiquinone Biosynthesis
fig|6666666.229933.peg.294 CDS AJMF02000008.1 26714 27541 2 + 828 Glutamate racemase (EC 5.1.1.3) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Peptidoglycan Biosynthesis
fig|6666666.229933.peg.295 CDS AJMF02000009.1 925 107 -1 - 819 Peptide transport system ATP-binding protein SapF - none -
fig|6666666.229933.peg.296 CDS AJMF02000009.1 1981 929 -1 - 1053 Peptide transport system ATP-binding protein SapD - none -
fig|6666666.229933.peg.297 CDS AJMF02000009.1 2876 1989 -2 - 888 Peptide transport system permease protein SapC - none -
fig|6666666.229933.peg.298 CDS AJMF02000009.1 3750 2866 -3 - 885 Peptide transport system permease protein SapB - none -
fig|6666666.229933.peg.299 CDS AJMF02000009.1 5462 3831 -2 - 1632 Peptide transport periplasmic protein sapA (TC 3.A.1.5.5) - none -
fig|6666666.229933.peg.300 CDS AJMF02000009.1 5728 7143 1 + 1416 Conserved protein YcjX with nucleoside triphosphate hydrolase domain A conserved operon linked to TyrR and possibly involved in virulence
fig|6666666.229933.peg.301 CDS AJMF02000009.1 7157 8236 2 + 1080 Membrane protein YcjF A conserved operon linked to TyrR and possibly involved in virulence
fig|6666666.229933.peg.302 CDS AJMF02000009.1 8320 9279 1 + 960 Transcriptional repressor protein TyrR Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate);
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229933.peg.303 CDS AJMF02000009.1 9410 9276 -2 - 135 hypothetical protein - none -
fig|6666666.229933.peg.304 CDS AJMF02000009.1 9644 9495 -2 - 150 GTP-binding protein HflX Hfl operon;
Universal GTPases
fig|6666666.229933.peg.305 CDS AJMF02000009.1 9955 9659 -1 - 297 RNA-binding protein Hfq Hfl operon;
Polyadenylation bacterial
fig|6666666.229933.peg.306 CDS AJMF02000009.1 11019 10075 -3 - 945 tRNA dimethylallyltransferase (EC 2.5.1.75) tRNA modification Bacteria;
tRNA processing
fig|6666666.229933.peg.307 CDS AJMF02000009.1 12884 11034 -2 - 1851 DNA mismatch repair protein MutL DNA repair, bacterial MutL-MutS system
fig|6666666.229933.peg.308 CDS AJMF02000009.1 14371 12884 -1 - 1488 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) Murein Hydrolases;
Recycling of Peptidoglycan Amino Acids
fig|6666666.229933.peg.309 CDS AJMF02000009.1 14862 14368 -3 - 495 TsaE protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA Scaffold proteins for [4Fe-4S] cluster assembly (MRP family);
YjeE;
YrdC-YciO-Sua5 protein family
fig|6666666.229933.peg.310 CDS AJMF02000009.1 14837 14965 2 + 129 hypothetical protein - none -
fig|6666666.229933.peg.311 CDS AJMF02000009.1 16811 15018 -2 - 1794 Mlr4739 protein - none -
fig|6666666.229933.peg.312 CDS AJMF02000009.1 18119 17199 -2 - 921 RfbJ protein - none -
fig|6666666.229933.peg.313 CDS AJMF02000009.1 19635 18127 -3 - 1509 putative integral membrane protein - none -
fig|6666666.229933.peg.314 CDS AJMF02000009.1 20239 19622 -1 - 618 Glycerate kinase (EC 2.7.1.31) D-galactarate, D-glucarate and D-glycerate catabolism;
D-galactarate, D-glucarate and D-glycerate catabolism - gjo;
Glycerate metabolism;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Glycine and Serine Utilization
fig|6666666.229933.peg.315 CDS AJMF02000009.1 21782 20268 -2 - 1515 Dca - none -
fig|6666666.229933.peg.316 CDS AJMF02000009.1 22849 22301 -1 - 549 3@1-to-5@1 oligoribonuclease (orn) RNA processing and degradation, bacterial
fig|6666666.229933.peg.317 CDS AJMF02000009.1 22920 23960 3 + 1041 Ribosome small subunit-stimulated GTPase EngC Universal GTPases
fig|6666666.229933.peg.318 CDS AJMF02000009.1 24181 24438 1 + 258 Phosphotransferase system, phosphocarrier protein HPr Fructose utilization
fig|6666666.229933.peg.319 CDS AJMF02000009.1 24552 26279 3 + 1728 Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) Fructose utilization
fig|6666666.229933.peg.320 CDS AJMF02000009.1 26340 26840 3 + 501 PTS system, glucose-specific IIA component - none -
fig|6666666.229933.peg.321 CDS AJMF02000009.1 29005 26966 -1 - 2040 Oligopeptidase A (EC 3.4.24.70) Protein degradation
fig|6666666.229933.peg.322 CDS AJMF02000009.1 29147 29512 2 + 366 FIG039061: hypothetical protein related to heme utilization - none -
fig|6666666.229933.peg.323 CDS AJMF02000009.1 29568 31106 3 + 1539 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229933.peg.324 CDS AJMF02000009.1 31968 31381 -3 - 588 Aminodeoxychorismate lyase (EC 4.1.3.38) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Folate Biosynthesis;
Tryptophan synthesis
fig|6666666.229933.peg.325 CDS AJMF02000009.1 32945 31971 -2 - 975 Para-aminobenzoate synthase, aminase component (EC 2.6.1.85) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Folate Biosynthesis;
Tryptophan synthesis
fig|6666666.229933.peg.326 CDS AJMF02000009.1 33047 33613 2 + 567 Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Folate Biosynthesis;
Tryptophan synthesis
fig|6666666.229933.peg.327 CDS AJMF02000009.1 33769 34713 1 + 945 Hydroxypyruvate reductase (EC 1.1.1.81) Glycerate metabolism;
Glycolate, glyoxylate interconversions
fig|6666666.229933.peg.328 CDS AJMF02000009.1 35256 36440 3 + 1185 Lipoprotein releasing system transmembrane protein LolC Lipopolysaccharide assembly;
Lipoprotein sorting system
fig|6666666.229933.peg.329 CDS AJMF02000009.1 36455 37141 2 + 687 Lipoprotein releasing system ATP-binding protein LolD Lipopolysaccharide assembly;
Lipoprotein sorting system
fig|6666666.229933.peg.330 CDS AJMF02000009.1 37141 38391 1 + 1251 Lipoprotein releasing system transmembrane protein LolE Lipopolysaccharide assembly;
Lipoprotein sorting system
fig|6666666.229933.peg.331 CDS AJMF02000009.1 38492 39571 2 + 1080 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha (EC 2.5.1.54) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229933.peg.332 CDS AJMF02000009.1 39702 39580 -3 - 123 hypothetical protein - none -
fig|6666666.229933.peg.333 CDS AJMF02000009.1 39717 41123 3 + 1407 Replicative DNA helicase (EC 3.6.1.-) - none -
fig|6666666.229933.peg.334 CDS AJMF02000009.1 41147 42229 2 + 1083 Alanine racemase (EC 5.1.1.1) ## biosynthetic Alanine biosynthesis;
Pyruvate Alanine Serine Interconversions
fig|6666666.229933.peg.335 CDS AJMF02000009.1 42245 43894 2 + 1650 Glucose-6-phosphate isomerase (EC 5.3.1.9) Glycolysis and Gluconeogenesis
fig|6666666.229933.peg.336 CDS AJMF02000009.1 44034 44507 3 + 474 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster
fig|6666666.229933.peg.337 CDS AJMF02000009.1 44514 44939 3 + 426 Transcription termination protein NusB Riboflavin synthesis cluster;
Transcription factors bacterial
fig|6666666.229933.peg.338 CDS AJMF02000009.1 44958 45941 3 + 984 Thiamine-monophosphate kinase (EC 2.7.4.16) 5-FCL-like protein;
Riboflavin synthesis cluster;
Thiamin biosynthesis
fig|6666666.229933.peg.339 CDS AJMF02000009.1 45951 46442 3 + 492 Phosphatidylglycerophosphatase A (EC 3.1.3.27) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Riboflavin synthesis cluster
fig|6666666.229933.peg.340 CDS AJMF02000009.1 46451 47074 2 + 624 L-lysine permease - none -
fig|6666666.229933.peg.341 CDS AJMF02000009.1 47096 47908 2 + 813 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229933.peg.342 CDS AJMF02000009.1 48323 48075 -2 - 249 Ferredoxin Soluble cytochromes and functionally related electron carriers
fig|6666666.229933.peg.343 CDS AJMF02000009.1 48660 48391 -3 - 270 hypothetical protein - none -
fig|6666666.229933.peg.344 CDS AJMF02000009.1 49812 48682 -3 - 1131 Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) Ribonucleotide reduction
fig|6666666.229933.peg.345 CDS AJMF02000009.1 50670 50014 -3 - 657 hypothetical protein - none -
fig|6666666.229933.peg.346 CDS AJMF02000009.1 52994 50724 -2 - 2271 Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) Ribonucleotide reduction
fig|6666666.229933.peg.347 CDS AJMF02000009.1 54829 53297 -1 - 1533 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229933.peg.348 CDS AJMF02000009.1 54907 55029 1 + 123 hypothetical protein - none -
fig|6666666.229933.peg.349 CDS AJMF02000009.1 93686 94588 2 + 903 Ferric iron ABC transporter, iron-binding protein Iron acquisition in Streptococcus
fig|6666666.229933.peg.350 CDS AJMF02000009.1 94640 96673 2 + 2034 Ferric iron ABC transporter, permease protein Iron acquisition in Streptococcus
fig|6666666.229933.peg.351 CDS AJMF02000009.1 96657 97697 3 + 1041 Sulfate and thiosulfate import ATP-binding protein CysA (EC 3.6.3.25) Cysteine Biosynthesis;
Uptake of selenate and selenite
fig|6666666.229933.peg.352 CDS AJMF02000009.1 99808 97757 -1 - 2052 Periplasmic alpha-amylase (EC 3.2.1.1) Maltose and Maltodextrin Utilization
fig|6666666.229933.peg.353 CDS AJMF02000009.1 100793 99903 -2 - 891 Maltose/maltodextrin ABC transporter, permease protein MalG Maltose and Maltodextrin Utilization
fig|6666666.229933.peg.354 CDS AJMF02000009.1 102359 100815 -2 - 1545 Maltose/maltodextrin ABC transporter, permease protein MalF Maltose and Maltodextrin Utilization
fig|6666666.229933.peg.355 CDS AJMF02000009.1 102514 102383 -1 - 132 hypothetical protein - none -
fig|6666666.229933.peg.356 CDS AJMF02000009.1 103673 102483 -2 - 1191 Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein MalE Alpha-Amylase locus in Streptocococcus;
Bacterial Chemotaxis;
Maltose and Maltodextrin Utilization
fig|6666666.229933.peg.357 CDS AJMF02000009.1 104130 105248 3 + 1119 Maltose/maltodextrin transport ATP-binding protein MalK (EC 3.6.3.19) Maltose and Maltodextrin Utilization
fig|6666666.229933.peg.358 CDS AJMF02000009.1 105325 106608 1 + 1284 Maltoporin (maltose/maltodextrin high-affinity receptor, phage lambda receptor protein) Maltose and Maltodextrin Utilization
fig|6666666.229933.peg.359 CDS AJMF02000009.1 106694 107593 2 + 900 Maltose operon periplasmic protein MalM Maltose and Maltodextrin Utilization
fig|6666666.229933.peg.360 CDS AJMF02000009.1 108701 107970 -2 - 732 Molybdopterin biosynthesis protein MoeB Molybdenum cofactor biosynthesis
fig|6666666.229933.peg.361 CDS AJMF02000009.1 109931 108717 -2 - 1215 Molybdopterin biosynthesis protein MoeA Molybdenum cofactor biosynthesis
fig|6666666.229933.peg.362 CDS AJMF02000009.1 110060 110716 2 + 657 GTP cyclohydrolase I (EC 3.5.4.16) type 1 Folate Biosynthesis;
Folate biosynthesis cluster;
Molybdenum cofactor biosynthesis;
Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229933.peg.363 CDS AJMF02000009.1 111155 110817 -2 - 339 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) Metallocarboxypeptidases (EC 3.4.17.-);
Murein Hydrolases;
Peptidoglycan Biosynthesis
fig|6666666.229933.peg.364 CDS AJMF02000009.1 112403 112879 2 + 477 Transcription elongation factor GreA Transcription factors bacterial
fig|6666666.229933.peg.365 CDS AJMF02000009.1 113254 112952 -1 - 303 FIG004454: RNA binding protein - none -
fig|6666666.229933.peg.366 CDS AJMF02000009.1 113422 113721 1 + 300 Phage-related protein - none -
fig|6666666.229933.peg.367 CDS AJMF02000009.1 113718 114014 3 + 297 FIG045511: hypothetical antitoxin (to FIG022160: hypothetical toxin) - none -
fig|6666666.229933.peg.368 CDS AJMF02000009.1 114661 114047 -1 - 615 Riboflavin synthase eubacterial/eukaryotic (EC 2.5.1.9) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster;
riboflavin to FAD
fig|6666666.229933.peg.369 CDS AJMF02000009.1 114688 116085 1 + 1398 Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps Multidrug Resistance Efflux Pumps;
Riboflavin, FMN and FAD metabolism in plants
fig|6666666.229933.peg.370 CDS AJMF02000009.1 116868 116389 -3 - 480 Cys-tRNA(Pro) deacylase YbaK tRNA aminoacylation, Pro
fig|6666666.229933.peg.371 CDS AJMF02000009.1 116929 117732 1 + 804 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch;
Threonine and Homoserine Biosynthesis
fig|6666666.229933.peg.372 CDS AJMF02000009.1 117732 118166 3 + 435 Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229933.peg.373 CDS AJMF02000009.1 118135 118938 1 + 804 Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229933.peg.374 CDS AJMF02000009.1 118941 119555 3 + 615 ABC transporter ATP-binding protein - none -
fig|6666666.229933.peg.375 CDS AJMF02000009.1 119552 120412 2 + 861 Molybdenum transport system protein ModD Molybdenum cofactor biosynthesis
fig|6666666.229933.peg.376 CDS AJMF02000009.1 120708 122156 3 + 1449 TldD protein, part of TldE/TldD proteolytic complex CBSS-354.1.peg.2917;
Putative TldE-TldD proteolytic complex
fig|6666666.229933.peg.377 CDS AJMF02000009.1 122207 127978 2 + 5772 FIG00904191: hypothetical protein - none -
fig|6666666.229933.peg.378 CDS AJMF02000009.1 128111 129160 2 + 1050 Putative membrane protein YeiH - none -
fig|6666666.229933.peg.379 CDS AJMF02000009.1 129328 131637 1 + 2310 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) DNA uptake cluster;
Peptidoglycan Biosynthesis;
Type IV pilus
fig|6666666.229933.peg.380 CDS AJMF02000009.1 132421 131747 -1 - 675 3-keto-L-gulonate 6-phosphate decarboxylase L-ascorbate utilization (and related gene clusters)
fig|6666666.229933.peg.381 CDS AJMF02000009.1 132959 132498 -2 - 462 Ascorbate-specific PTS system, EIIA component (EC 2.7.1.-) L-ascorbate utilization (and related gene clusters)
fig|6666666.229933.peg.382 CDS AJMF02000009.1 134786 133014 -2 - 1773 Ascorbate-specific PTS system, EIIC component L-ascorbate utilization (and related gene clusters)
fig|6666666.229933.peg.383 CDS AJMF02000009.1 135134 136225 2 + 1092 Probable L-ascorbate-6-phosphate lactonase UlaG (EC 3.1.1.-) (L-ascorbate utilization protein G) L-ascorbate utilization (and related gene clusters)
fig|6666666.229933.peg.384 CDS AJMF02000009.1 136317 137066 3 + 750 Ascorbate utilization transcriptional regulator UlaR, HTH-type L-ascorbate utilization (and related gene clusters)
fig|6666666.229933.peg.385 CDS AJMF02000009.1 137107 137967 1 + 861 L-xylulose 5-phosphate 3-epimerase (EC 5.1.3.-) L-ascorbate utilization (and related gene clusters)
fig|6666666.229933.peg.386 CDS AJMF02000009.1 137961 138656 3 + 696 L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) L-ascorbate utilization (and related gene clusters)
fig|6666666.229933.peg.387 CDS AJMF02000009.1 139953 138739 -3 - 1215 Tyrosine-specific transport protein - none -
fig|6666666.229933.peg.388 CDS AJMF02000009.1 140215 140442 1 + 228 Beta-galactosidase (EC 3.2.1.23) Galactosylceramide and Sulfatide metabolism;
Lactose and Galactose Uptake and Utilization;
Lactose utilization
fig|6666666.229933.peg.389 CDS AJMF02000009.1 140969 140706 -2 - 264 Glutaredoxin 1 Glutaredoxins;
Glutathione: Redox cycle
fig|6666666.229933.peg.390 CDS AJMF02000009.1 141096 141830 3 + 735 Oxygen-insensitive NADPH nitroreductase (EC 1.-.-.-) - none -
fig|6666666.229933.peg.391 CDS AJMF02000009.1 141921 142754 3 + 834 Ribosomal protein S6 glutaminyl transferase Ribosome biogenesis bacterial
fig|6666666.229933.peg.392 CDS AJMF02000009.1 143655 143050 -3 - 606 FIG026291: Hypothetical periplasmic protein - none -
fig|6666666.229933.peg.393 CDS AJMF02000009.1 145153 143759 -1 - 1395 Fumarate hydratase class II (EC 4.2.1.2) - none -
fig|6666666.229933.peg.394 CDS AJMF02000009.1 145363 145812 1 + 450 DNA polymerase III chi subunit (EC 2.7.7.7) - none -
fig|6666666.229933.peg.395 CDS AJMF02000009.1 145851 145979 3 + 129 RNA-binding domain protein - none -
fig|6666666.229933.peg.396 CDS AJMF02000009.1 146007 146135 3 + 129 RNA-binding domain protein - none -
fig|6666666.229933.peg.397 CDS AJMF02000009.1 148170 147604 -3 - 567 hypothetical protein - none -
fig|6666666.229933.peg.398 CDS AJMF02000009.1 149633 148974 -2 - 660 hypothetical protein - none -
fig|6666666.229933.peg.399 CDS AJMF02000010.1 131 271 2 + 141 hypothetical protein - none -
fig|6666666.229933.peg.400 CDS AJMF02000010.1 1031 915 -2 - 117 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229933.peg.401 CDS AJMF02000010.1 1465 1238 -1 - 228 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229933.peg.402 CDS AJMF02000011.1 1167 685 -3 - 483 Thiol:disulfide oxidoreductase associated with MetSO reductase Peptide methionine sulfoxide reductase
fig|6666666.229933.peg.403 CDS AJMF02000011.1 1823 1182 -2 - 642 Cytochrome c-type biogenesis protein CcdA homolog, associated with MetSO reductase Peptide methionine sulfoxide reductase
fig|6666666.229933.peg.404 CDS AJMF02000011.1 2897 1827 -2 - 1071 Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11) / Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) Cluster Ytf and putative sugar transporter;
Peptide methionine sulfoxide reductase;
Peptide methionine sulfoxide reductase;
Putative sugar ABC transporter (ytf cluster)
fig|6666666.229933.peg.405 CDS AJMF02000011.1 3113 3805 2 + 693 Carbonic anhydrase (EC 4.2.1.1) - none -
fig|6666666.229933.peg.406 CDS AJMF02000011.1 4498 3911 -1 - 588 21 kDa hemolysin precursor CBSS-160492.1.peg.550
fig|6666666.229933.peg.407 CDS AJMF02000011.1 5147 4563 -2 - 585 Phosphoheptose isomerase (EC 5.3.1.-) CBSS-160492.1.peg.550;
Capsular heptose biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.229933.peg.408 CDS AJMF02000011.1 5528 5160 -2 - 369 Predicted endonuclease distantly related to archaeal Holliday junction resolvase CBSS-160492.1.peg.550
fig|6666666.229933.peg.409 CDS AJMF02000011.1 7247 5529 -2 - 1719 LppC putative lipoprotein CBSS-160492.1.peg.550
fig|6666666.229933.peg.410 CDS AJMF02000011.1 7324 8172 1 + 849 rRNA small subunit methyltransferase I 16S rRNA modification within P site of ribosome;
CBSS-160492.1.peg.550;
Heat shock dnaK gene cluster extended
fig|6666666.229933.peg.411 CDS AJMF02000011.1 8442 10031 3 + 1590 Glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Respiratory dehydrogenases 1
fig|6666666.229933.peg.412 CDS AJMF02000011.1 10208 11545 2 + 1338 NADH dehydrogenase (EC 1.6.99.3) Respiratory dehydrogenases 1;
Riboflavin synthesis cluster
fig|6666666.229933.peg.413 CDS AJMF02000011.1 12238 11648 -1 - 591 FMN-dependent NADH-azoreductase - none -
fig|6666666.229933.peg.414 CDS AJMF02000011.1 12431 13489 2 + 1059 Possible protease sohB (EC 3.4.21.-) - none -
fig|6666666.229933.peg.415 CDS AJMF02000011.1 13679 14503 2 + 825 Outer membrane protein A precursor Osmoregulation
fig|6666666.229933.peg.416 CDS AJMF02000011.1 15437 14562 -2 - 876 Ribulosamine/erythrulosamine 3-kinase potentially involved in protein deglycation Protein deglycation
fig|6666666.229933.peg.417 CDS AJMF02000011.1 15678 17609 3 + 1932 Threonyl-tRNA synthetase (EC 6.1.1.3) tRNA aminoacylation, Thr
fig|6666666.229933.peg.418 CDS AJMF02000011.1 17860 18471 1 + 612 Type III restriction-modification system methylation subunit (EC 2.1.1.72) Restriction-Modification System
fig|6666666.229933.peg.419 CDS AJMF02000011.1 18453 18617 3 + 165 hypothetical protein - none -
fig|6666666.229933.peg.420 CDS AJMF02000011.1 18592 18906 1 + 315 Type III restriction-modification system restriction subunit (EC 3.1.21.5) - none -
fig|6666666.229933.peg.421 CDS AJMF02000011.1 19008 18895 -3 - 114 hypothetical protein - none -
fig|6666666.229933.peg.422 CDS AJMF02000011.1 19802 19023 -2 - 780 Ferredoxin--NADP(+) reductase (EC 1.18.1.2) Biogenesis of cytochrome c oxidases
fig|6666666.229933.peg.423 CDS AJMF02000011.1 20177 20656 2 + 480 Translation initiation factor 3 Translation initiation factors bacterial
fig|6666666.229933.peg.424 CDS AJMF02000011.1 20800 20657 -1 - 144 hypothetical protein - none -
fig|6666666.229933.peg.425 CDS AJMF02000011.1 21131 21484 2 + 354 LSU ribosomal protein L20p Ribosome LSU bacterial
fig|6666666.229933.peg.426 CDS AJMF02000011.1 22385 22266 -2 - 120 hypothetical protein - none -
fig|6666666.229933.peg.427 CDS AJMF02000011.1 22476 23426 3 + 951 Tagatose 1,6-bisphosphate aldolase (EC 4.1.2.40) - none -
fig|6666666.229933.peg.428 CDS AJMF02000011.1 23444 24736 2 + 1293 Tagatose-6-phosphate kinase GatZ (EC 2.7.1.144) D-Tagatose and Galactitol Utilization
fig|6666666.229933.peg.429 CDS AJMF02000011.1 24714 25163 3 + 450 PTS system, galactitol-specific IIA component (EC 2.7.1.69) D-Tagatose and Galactitol Utilization
fig|6666666.229933.peg.430 CDS AJMF02000011.1 25182 25466 3 + 285 PTS system, galactitol-specific IIB component (EC 2.7.1.69) D-Tagatose and Galactitol Utilization
fig|6666666.229933.peg.431 CDS AJMF02000011.1 25472 26320 2 + 849 PTS system, galactitol-specific IIC component (EC 2.7.1.69) D-Tagatose and Galactitol Utilization
fig|6666666.229933.peg.432 CDS AJMF02000011.1 26394 27053 3 + 660 Galactitol-1-phosphate 5-dehydrogenase (EC 1.1.1.251) D-Tagatose and Galactitol Utilization
fig|6666666.229933.peg.433 CDS AJMF02000011.1 27121 27879 1 + 759 Galactitol utilization operon repressor D-Tagatose and Galactitol Utilization
fig|6666666.229933.peg.434 CDS AJMF02000011.1 29849 27999 -2 - 1851 1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis;
Pyridoxin (Vitamin B6) Biosynthesis;
Thiamin biosynthesis
fig|6666666.229933.peg.435 CDS AJMF02000011.1 30824 29934 -2 - 891 Octaprenyl diphosphate synthase (EC 2.5.1.90) / Dimethylallyltransferase (EC 2.5.1.1) / (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10) / Geranylgeranyl diphosphate synthase (EC 2.5.1.29) Isoprenoid Biosynthesis;
Isoprenoid Biosynthesis;
Isoprenoid Biosynthesis: Interconversions;
Isoprenoinds for Quinones;
Isoprenoinds for Quinones;
Isoprenoinds for Quinones;
Isoprenoinds for Quinones;
Polyprenyl Diphosphate Biosynthesis;
Polyprenyl Diphosphate Biosynthesis;
Polyprenyl Diphosphate Biosynthesis
fig|6666666.229933.peg.436 CDS AJMF02000011.1 31080 30835 -3 - 246 Exodeoxyribonuclease VII small subunit (EC 3.1.11.6) DNA repair, bacterial;
Purine salvage cluster
fig|6666666.229933.peg.437 CDS AJMF02000011.1 31305 32201 3 + 897 Acetyl-coenzyme A carboxyl transferase beta chain (EC 6.4.1.2) Fatty Acid Biosynthesis FASII
fig|6666666.229933.peg.438 CDS AJMF02000011.1 32224 33570 1 + 1347 Dihydrofolate synthase (EC 6.3.2.12) @ Folylpolyglutamate synthase (EC 6.3.2.17) Folate Biosynthesis;
Folate Biosynthesis
fig|6666666.229933.peg.439 CDS AJMF02000011.1 34268 33627 -2 - 642 Hypothetical, related to broad specificity phosphatases COG0406 CBSS-196164.1.peg.461
fig|6666666.229933.peg.440 CDS AJMF02000011.1 35787 34330 -3 - 1458 Cardiolipin synthetase (EC 2.7.8.-) Cardiolipin synthesis;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229933.peg.441 CDS AJMF02000011.1 36709 35801 -1 - 909 Putative surface protein - none -
fig|6666666.229933.peg.442 CDS AJMF02000011.1 36828 37517 3 + 690 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses;
Ribosome biogenesis bacterial;
tRNA modification Bacteria
fig|6666666.229933.peg.443 CDS AJMF02000011.1 37562 38425 2 + 864 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229933.peg.444 CDS AJMF02000011.1 38508 38831 3 + 324 Alkylphosphonate utilization operon protein PhnA - none -
fig|6666666.229933.peg.445 CDS AJMF02000011.1 39799 38882 -1 - 918 hypothetical protein - none -
fig|6666666.229933.peg.446 CDS AJMF02000011.1 40578 39847 -3 - 732 hypothetical protein - none -
fig|6666666.229933.peg.447 CDS AJMF02000011.1 41134 41403 1 + 270 hypothetical protein - none -
fig|6666666.229933.peg.448 CDS AJMF02000011.1 42030 42278 3 + 249 Esterase/lipase - none -
fig|6666666.229933.peg.449 CDS AJMF02000011.1 42275 43393 2 + 1119 Esterase/lipase - none -
fig|6666666.229933.peg.450 CDS AJMF02000011.1 45040 43667 -1 - 1374 RND efflux system, outer membrane lipoprotein CmeC Multidrug Resistance Efflux Pumps
fig|6666666.229933.peg.451 CDS AJMF02000011.1 47051 45117 -2 - 1935 Macrolide export ATP-binding/permease protein MacB (EC 3.6.3.-) Multidrug Resistance Efflux Pumps
fig|6666666.229933.peg.452 CDS AJMF02000011.1 48120 47071 -3 - 1050 Macrolide-specific efflux protein MacA Multidrug Resistance Efflux Pumps
fig|6666666.229933.peg.453 CDS AJMF02000011.1 48435 50126 3 + 1692 Glutaminyl-tRNA synthetase (EC 6.1.1.18) tRNA aminoacylation, Glu and Gln
fig|6666666.229933.peg.454 CDS AJMF02000011.1 50198 50632 2 + 435 YcgN (Fragment) CBSS-243277.1.peg.4359
fig|6666666.229933.peg.455 CDS AJMF02000011.1 50732 51292 2 + 561 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) Glycogen metabolism;
Glycogen metabolism cluster;
Maltose and Maltodextrin Utilization;
Maltose utilization cluster
fig|6666666.229933.peg.456 CDS AJMF02000011.1 51289 53484 1 + 2196 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) Glycogen metabolism;
Glycogen metabolism cluster
fig|6666666.229933.peg.457 CDS AJMF02000011.1 53481 55490 3 + 2010 Glycogen debranching enzyme (EC 3.2.1.-) Glycogen metabolism;
Glycogen metabolism cluster
fig|6666666.229933.peg.458 CDS AJMF02000011.1 55517 56827 2 + 1311 Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27) Glycogen metabolism;
Glycogen metabolism cluster
fig|6666666.229933.peg.459 CDS AJMF02000011.1 57029 58468 2 + 1440 Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21) Glycogen metabolism;
Glycogen metabolism cluster
fig|6666666.229933.peg.460 CDS AJMF02000011.1 58591 61056 1 + 2466 Glycogen phosphorylase (EC 2.4.1.1) Glycogen metabolism;
Glycogen metabolism cluster;
Maltose and Maltodextrin Utilization
fig|6666666.229933.peg.461 CDS AJMF02000011.1 61221 61081 -3 - 141 hypothetical protein - none -
fig|6666666.229933.peg.462 CDS AJMF02000011.1 61780 61175 -1 - 606 DedA protein DedA family of inner membrane proteins;
Uptake of selenate and selenite
fig|6666666.229933.peg.463 CDS AJMF02000011.1 61994 62281 2 + 288 LSU ribosomal protein L25p Ribosome LSU bacterial;
Transcription repair cluster
fig|6666666.229933.peg.464 CDS AJMF02000011.1 62429 63037 2 + 609 lipoprotein HlpB - none -
fig|6666666.229933.peg.465 CDS AJMF02000011.1 63185 64066 2 + 882 Murein-DD-endopeptidase (EC 3.4.99.-) Peptidoglycan Biosynthesis
fig|6666666.229933.peg.466 CDS AJMF02000011.1 64234 65562 1 + 1329 Chromosome partition protein MukF DNA structural proteins, bacterial;
MukBEF Chromosome Condensation
fig|6666666.229933.peg.467 CDS AJMF02000011.1 65590 65727 1 + 138 hypothetical protein - none -
fig|6666666.229933.peg.468 CDS AJMF02000011.1 65742 69203 3 + 3462 Putative 2-acylglycerophosphoethanolamine acyltransferase / acyl-acyl carrier protein synthetase (EC 6.2.1.20) - none -
fig|6666666.229933.peg.469 CDS AJMF02000011.1 69224 69964 2 + 741 Chromosome partition protein MukE DNA structural proteins, bacterial;
MukBEF Chromosome Condensation
fig|6666666.229933.peg.470 CDS AJMF02000011.1 69964 74454 1 + 4491 Chromosome partition protein MukB DNA structural proteins, bacterial;
MukBEF Chromosome Condensation
fig|6666666.229933.peg.471 CDS AJMF02000011.1 74530 75384 1 + 855 Integral membrane protein - none -
fig|6666666.229933.peg.472 CDS AJMF02000011.1 75416 76840 2 + 1425 Exodeoxyribonuclease I (EC 3.1.11.1) DNA Repair Base Excision
fig|6666666.229933.peg.473 CDS AJMF02000012.1 1554 325 -3 - 1230 Tyrosine-specific transport protein - none -
fig|6666666.229933.peg.474 CDS AJMF02000012.1 2367 1684 -3 - 684 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases - none -
fig|6666666.229933.peg.475 CDS AJMF02000012.1 3654 2383 -3 - 1272 Nicotinamide-nucleotide adenylyltransferase, NadR family (EC 2.7.7.1) / Ribosylnicotinamide kinase (EC 2.7.1.22) NAD and NADP cofactor biosynthesis global;
NAD and NADP cofactor biosynthesis global
fig|6666666.229933.peg.476 CDS AJMF02000012.1 4219 3974 -1 - 246 tRNA 5-methylaminomethyl-2-thiouridine synthase TusA mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.229933.peg.477 CDS AJMF02000012.1 4307 4579 2 + 273 FIG000605: protein co-occurring with transport systems (COG1739) Transport system clustering with HemG
fig|6666666.229933.peg.478 CDS AJMF02000012.1 4845 6308 3 + 1464 Potassium uptake protein TrkH Hyperosmotic potassium uptake;
Potassium homeostasis;
Potassium homeostasis;
Transport system clustering with HemG
fig|6666666.229933.peg.479 CDS AJMF02000012.1 6308 6820 2 + 513 Protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-) Heme and Siroheme Biosynthesis;
Transport system clustering with HemG
fig|6666666.229933.peg.480 CDS AJMF02000013.1 3686 210 -2 - 3477 DNA polymerase III alpha subunit (EC 2.7.7.7) - none -
fig|6666666.229933.peg.481 CDS AJMF02000013.1 3651 3830 3 + 180 hypothetical protein - none -
fig|6666666.229933.peg.482 CDS AJMF02000013.1 3885 5672 3 + 1788 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) Biotin biosynthesis;
Biotin synthesis cluster
fig|6666666.229933.peg.483 CDS AJMF02000013.1 5689 5805 1 + 117 hypothetical protein - none -
fig|6666666.229933.peg.484 CDS AJMF02000013.1 8245 8114 -1 - 132 hypothetical protein - none -
fig|6666666.229933.peg.485 CDS AJMF02000013.1 12162 14288 3 + 2127 Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) Ribonucleotide reduction
fig|6666666.229933.peg.486 CDS AJMF02000013.1 14469 14588 3 + 120 hypothetical protein - none -
fig|6666666.229933.peg.487 CDS AJMF02000013.1 14856 14731 -3 - 126 hypothetical protein - none -
fig|6666666.229933.peg.488 CDS AJMF02000013.1 14890 15357 1 + 468 Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) Ribonucleotide reduction
fig|6666666.229933.peg.489 CDS AJMF02000013.1 16172 15384 -2 - 789 Putative deoxyribonuclease YjjV Deoxyribose and Deoxynucleoside Catabolism;
YcfH
fig|6666666.229933.peg.490 CDS AJMF02000013.1 16456 16175 -1 - 282 hypothetical protein - none -
fig|6666666.229933.peg.491 CDS AJMF02000013.1 16604 16449 -2 - 156 hypothetical protein - none -
fig|6666666.229933.peg.492 CDS AJMF02000013.1 17210 16698 -2 - 513 Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase;
Queuosine-Archaeosine Biosynthesis
fig|6666666.229933.peg.493 CDS AJMF02000013.1 17280 18689 3 + 1410 Cysteinyl-tRNA synthetase (EC 6.1.1.16) tRNA aminoacylation, Cys
fig|6666666.229933.peg.494 CDS AJMF02000013.1 19799 18837 -2 - 963 Lipoate synthase Lipoic acid metabolism;
Lipoic acid synthesis cluster
fig|6666666.229933.peg.495 CDS AJMF02000013.1 20502 19864 -3 - 639 Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase Lipoic acid metabolism;
Lipoic acid synthesis cluster
fig|6666666.229933.peg.496 CDS AJMF02000013.1 20847 20548 -3 - 300 Proposed lipoate regulatory protein YbeD Lipoic acid metabolism;
Lipoic acid synthesis cluster
fig|6666666.229933.peg.497 CDS AJMF02000013.1 22110 20920 -3 - 1191 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) Metallocarboxypeptidases (EC 3.4.17.-);
Murein Hydrolases;
Peptidoglycan Biosynthesis
fig|6666666.229933.peg.498 CDS AJMF02000013.1 22998 22141 -3 - 858 Rare lipoprotein A precursor Peptidoglycan Biosynthesis
fig|6666666.229933.peg.499 CDS AJMF02000013.1 24162 23047 -3 - 1116 Rod shape-determining protein RodA Bacterial Cytoskeleton;
Peptidoglycan Biosynthesis
fig|6666666.229933.peg.500 CDS AJMF02000013.1 26116 24155 -1 - 1962 Penicillin-binding protein 2 (PBP-2) 16S rRNA modification within P site of ribosome;
CBSS-83331.1.peg.3039;
Peptidoglycan Biosynthesis
fig|6666666.229933.peg.501 CDS AJMF02000013.1 26665 26129 -1 - 537 LSU m3Psi1915 methyltransferase RlmH RNA methylation;
Ribosome biogenesis bacterial;
tRNA modification Bacteria
fig|6666666.229933.peg.502 CDS AJMF02000013.1 26964 26656 -3 - 309 Iojap protein - none -
fig|6666666.229933.peg.503 CDS AJMF02000013.1 28287 27031 -3 - 1257 ATP-dependent RNA helicase RhlB - none -
fig|6666666.229933.peg.504 CDS AJMF02000013.1 28612 29850 1 + 1239 Transcription termination factor Rho Transcription factors bacterial
fig|6666666.229933.peg.505 CDS AJMF02000013.1 31210 29975 -1 - 1236 Major facilitator superfamily (MFS) transport protein - none -
fig|6666666.229933.peg.506 CDS AJMF02000013.1 31297 31410 1 + 114 hypothetical protein - none -
fig|6666666.229933.peg.507 CDS AJMF02000013.1 31675 31445 -1 - 231 Acyl carrier protein Fatty Acid Biosynthesis FASII;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229933.peg.508 CDS AJMF02000013.1 32677 31949 -1 - 729 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) Fatty Acid Biosynthesis FASII
fig|6666666.229933.peg.509 CDS AJMF02000013.1 33640 32702 -1 - 939 Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39) Fatty Acid Biosynthesis FASII
fig|6666666.229933.peg.510 CDS AJMF02000013.1 34697 33747 -2 - 951 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) Fatty Acid Biosynthesis FASII
fig|6666666.229933.peg.511 CDS AJMF02000013.1 35763 34744 -3 - 1020 Phosphate:acyl-ACP acyltransferase PlsX Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229933.peg.512 CDS AJMF02000013.1 35960 35790 -2 - 171 LSU ribosomal protein L32p Ribosome LSU bacterial
fig|6666666.229933.peg.513 CDS AJMF02000013.1 36501 35977 -3 - 525 COG1399 protein, clustered with ribosomal protein L32p - none -
fig|6666666.229933.peg.514 CDS AJMF02000013.1 37214 36573 -2 - 642 Dethiobiotin synthetase (EC 6.3.3.3) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229933.peg.515 CDS AJMF02000013.1 37978 37214 -1 - 765 Biotin synthesis protein BioC Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229933.peg.516 CDS AJMF02000013.1 38622 37972 -3 - 651 Biotin synthesis protein BioG Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229933.peg.517 CDS AJMF02000013.1 39778 38603 -1 - 1176 8-amino-7-oxononanoate synthase (EC 2.3.1.47) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229933.peg.518 CDS AJMF02000013.1 41060 39771 -2 - 1290 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229933.peg.519 CDS AJMF02000013.1 41283 42152 3 + 870 Phosphatidylserine decarboxylase (EC 4.1.1.65) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229933.peg.520 CDS AJMF02000013.1 42178 42810 1 + 633 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase
fig|6666666.229933.peg.521 CDS AJMF02000013.1 43275 42874 -3 - 402 Glutamate 5-kinase (EC 2.7.2.11) Proline Synthesis
fig|6666666.229933.peg.522 CDS AJMF02000013.1 43517 43305 -2 - 213 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA Proline Synthesis;
Proline Synthesis
fig|6666666.229933.peg.523 CDS AJMF02000013.1 43677 43498 -3 - 180 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA Proline Synthesis;
Proline Synthesis
fig|6666666.229933.peg.524 CDS AJMF02000013.1 43828 44613 1 + 786 FIG023911: putative membrane protein CBSS-316275.9.peg.382
fig|6666666.229933.peg.525 CDS AJMF02000013.1 44615 45079 2 + 465 FIG001826: putative inner membrane protein CBSS-316275.9.peg.382
fig|6666666.229933.peg.526 CDS AJMF02000013.1 45119 45604 2 + 486 Dihydrofolate reductase (EC 1.5.1.3) 5-FCL-like protein;
Folate Biosynthesis
fig|6666666.229933.peg.527 CDS AJMF02000013.1 47034 45724 -3 - 1311 Magnesium and cobalt efflux protein CorC CBSS-56780.10.peg.1536;
Copper homeostasis: copper tolerance;
Glycyl-tRNA synthetase containing cluster;
Magnesium transport;
tRNA-methylthiotransferase containing cluster
fig|6666666.229933.peg.528 CDS AJMF02000013.1 46988 47128 2 + 141 hypothetical protein - none -
fig|6666666.229933.peg.529 CDS AJMF02000013.1 47649 47125 -3 - 525 FIG00696143: hypothetical protein - none -
fig|6666666.229933.peg.530 CDS AJMF02000013.1 48463 47681 -1 - 783 Putative deoxyribonuclease YcfH YcfH
fig|6666666.229933.peg.531 CDS AJMF02000013.1 49450 48467 -1 - 984 DNA polymerase III delta prime subunit (EC 2.7.7.7) - none -
fig|6666666.229933.peg.532 CDS AJMF02000013.1 50079 49447 -3 - 633 Thymidylate kinase (EC 2.7.4.9) pyrimidine conversions
fig|6666666.229933.peg.533 CDS AJMF02000013.1 51124 50081 -1 - 1044 FIG004453: protein YceG like CBSS-323097.3.peg.2594;
Cluster containing Alanyl-tRNA synthetase;
tRNA modification Bacteria
fig|6666666.229933.peg.534 CDS AJMF02000013.1 51601 51263 -1 - 339 Nitrogen regulatory protein P-II Ammonia assimilation
fig|6666666.229933.peg.535 CDS AJMF02000013.1 52435 51677 -1 - 759 Transcriptional regulators of sugar metabolism - none -
fig|6666666.229933.peg.536 CDS AJMF02000013.1 52673 53533 2 + 861 D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) Polyhydroxybutyrate metabolism
fig|6666666.229933.peg.537 CDS AJMF02000013.1 53536 54780 1 + 1245 Predicted pyridoxine biosynthesis protein (probably from glycolaldehide) - none -
fig|6666666.229933.peg.538 CDS AJMF02000013.1 54777 55409 3 + 633 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases - none -
fig|6666666.229933.peg.539 CDS AJMF02000013.1 55412 56188 2 + 777 Hydroxypyruvate isomerase (EC 5.3.1.22) Glycerate metabolism
fig|6666666.229933.peg.540 CDS AJMF02000013.1 56277 57422 3 + 1146 Low-affinity gluconate/H+ symporter GntU D-gluconate and ketogluconates metabolism
fig|6666666.229933.peg.541 CDS AJMF02000013.1 57466 58716 1 + 1251 Lysophospholipase (EC 3.1.1.5) Triacylglycerol metabolism
fig|6666666.229933.peg.542 CDS AJMF02000013.1 58912 59730 1 + 819 HMP-PP hydrolase (pyridoxal phosphatase) Cof, detected in genetic screen for thiamin metabolic genes (PMID:15292217) - none -
fig|6666666.229933.peg.543 CDS AJMF02000013.1 62536 59936 -1 - 2601 DNA mismatch repair protein MutS DNA repair, bacterial MutL-MutS system;
DNA repair system including RecA, MutS and a hypothetical protein
fig|6666666.229933.peg.544 CDS AJMF02000013.1 63667 62621 -1 - 1047 hypothetical protein - none -
fig|6666666.229933.peg.545 CDS AJMF02000013.1 64609 63851 -1 - 759 rRNA small subunit methyltransferase J - none -
fig|6666666.229933.peg.546 CDS AJMF02000013.1 65708 64611 -2 - 1098 tRNA (uracil(54)-C5)-methyltransferase (EC 2.1.1.35) RNA methylation;
tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229933.peg.547 CDS AJMF02000013.1 66107 65778 -2 - 330 Protein yifE - none -
fig|6666666.229933.peg.548 CDS AJMF02000013.1 66784 66167 -1 - 618 Periplasmic thiol:disulfide interchange protein DsbA Biogenesis of c-type cytochromes;
Periplasmic disulfide interchange
fig|6666666.229933.peg.549 CDS AJMF02000013.1 67069 66803 -1 - 267 Protein yihD - none -
fig|6666666.229933.peg.550 CDS AJMF02000013.1 67153 67737 1 + 585 Molybdopterin-guanine dinucleotide biosynthesis protein MobA Molybdenum cofactor biosynthesis;
ar-431-EC Molybdopterin-guanine dinucleotide biosynthesis
fig|6666666.229933.peg.551 CDS AJMF02000013.1 67836 68366 3 + 531 ATPases involved in chromosome partitioning - none -
fig|6666666.229933.peg.552 CDS AJMF02000013.1 68478 70007 3 + 1530 Fructose-specific phosphocarrier protein HPr (EC 2.7.1.69) / PTS system, fructose-specific IIA component (EC 2.7.1.69) Fructose utilization;
Fructose utilization
fig|6666666.229933.peg.553 CDS AJMF02000013.1 70010 70951 2 + 942 1-phosphofructokinase (EC 2.7.1.56) Fructose utilization
fig|6666666.229933.peg.554 CDS AJMF02000013.1 70956 72620 3 + 1665 PTS system, fructose-specific IIB component (EC 2.7.1.69) / PTS system, fructose-specific IIC component (EC 2.7.1.69) Fructose utilization;
Fructose utilization
fig|6666666.229933.peg.555 CDS AJMF02000013.1 73249 72728 -1 - 522 LysR family regulatory protein CidR Murein hydrolase regulation and cell death
fig|6666666.229933.peg.556 CDS AJMF02000013.1 73264 73815 1 + 552 NAD(P)H oxidoreductase YRKL (EC 1.6.99.-) @ Putative NADPH-quinone reductase (modulator of drug activity B) @ Flavodoxin 2 Flavodoxin;
Flavodoxin
fig|6666666.229933.peg.557 CDS AJMF02000013.1 73855 74193 1 + 339 hypothetical protein - none -
fig|6666666.229933.peg.558 CDS AJMF02000013.1 74339 75043 2 + 705 hypothetical protein - none -
fig|6666666.229933.peg.559 CDS AJMF02000013.1 75484 75894 1 + 411 Preprotein translocase subunit SecE (TC 3.A.5.1.1) LSU ribosomal proteins cluster
fig|6666666.229933.peg.560 CDS AJMF02000013.1 75896 76447 2 + 552 Transcription antitermination protein NusG LSU ribosomal proteins cluster;
Transcription factors bacterial
fig|6666666.229933.peg.561 CDS AJMF02000013.1 76603 77031 1 + 429 LSU ribosomal protein L11p (L12e) LSU ribosomal proteins cluster;
Ribosome LSU bacterial
fig|6666666.229933.peg.562 CDS AJMF02000013.1 77036 77725 2 + 690 LSU ribosomal protein L1p (L10Ae) LSU ribosomal proteins cluster;
Ribosome LSU bacterial
fig|6666666.229933.peg.563 CDS AJMF02000013.1 77740 77916 1 + 177 hypothetical protein - none -
fig|6666666.229933.peg.564 CDS AJMF02000013.1 78087 78578 3 + 492 LSU ribosomal protein L10p (P0) LSU ribosomal proteins cluster;
Ribosome LSU bacterial
fig|6666666.229933.peg.565 CDS AJMF02000013.1 78630 79001 3 + 372 LSU ribosomal protein L7/L12 (P1/P2) LSU ribosomal proteins cluster;
Ribosome LSU bacterial
fig|6666666.229933.peg.566 CDS AJMF02000013.1 79272 83300 3 + 4029 DNA-directed RNA polymerase beta subunit (EC 2.7.7.6) Mycobacterium virulence operon involved in DNA transcription;
RNA polymerase bacterial
fig|6666666.229933.peg.567 CDS AJMF02000013.1 83403 87671 3 + 4269 DNA-directed RNA polymerase beta@1 subunit (EC 2.7.7.6) Mycobacterium virulence operon involved in DNA transcription;
RNA polymerase bacterial
fig|6666666.229933.peg.568 CDS AJMF02000014.1 466 215 -1 - 252 Transcriptional regulator, XRE family - none -
fig|6666666.229933.peg.569 CDS AJMF02000014.1 617 2254 2 + 1638 NAD-dependent malic enzyme (EC 1.1.1.38) Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229933.peg.570 CDS AJMF02000014.1 3673 2474 -1 - 1200 NAD(FAD)-utilizing dehydrogenases - none -
fig|6666666.229933.peg.571 CDS AJMF02000014.1 4719 3670 -3 - 1050 Cytochrome c-type heme lyase subunit nrfF, nitrite reductase complex assembly - none -
fig|6666666.229933.peg.572 CDS AJMF02000014.1 5246 4716 -2 - 531 Putative thiol:disulfide oxidoreductase, nitrite reductase complex assembly - none -
fig|6666666.229933.peg.573 CDS AJMF02000014.1 7149 5239 -3 - 1911 Cytochrome c-type heme lyase subunit nrfE, nitrite reductase complex assembly - none -
fig|6666666.229933.peg.574 CDS AJMF02000014.1 7171 7539 1 + 369 hypothetical protein - none -
fig|6666666.229933.peg.575 CDS AJMF02000014.1 8701 7736 -1 - 966 NrfD protein - none -
fig|6666666.229933.peg.576 CDS AJMF02000014.1 9375 8698 -3 - 678 NrfC protein - none -
fig|6666666.229933.peg.577 CDS AJMF02000014.1 10037 9372 -2 - 666 Cytochrome c-type protein NrfB precursor - none -
fig|6666666.229933.peg.578 CDS AJMF02000014.1 11634 10111 -3 - 1524 Cytochrome c552 precursor (EC 1.7.2.2) Soluble cytochromes and functionally related electron carriers
fig|6666666.229933.peg.579 CDS AJMF02000014.1 12501 12211 -3 - 291 hypothetical protein - none -
fig|6666666.229933.peg.580 CDS AJMF02000014.1 13142 12519 -2 - 624 Parvulin-like peptidyl-prolyl isomerase - none -
fig|6666666.229933.peg.581 CDS AJMF02000014.1 14200 13277 -1 - 924 Cytochrome c heme lyase subunit CcmH Biogenesis of c-type cytochromes;
Copper homeostasis
fig|6666666.229933.peg.582 CDS AJMF02000014.1 14652 14200 -3 - 453 Cytochrome c heme lyase subunit CcmL Biogenesis of c-type cytochromes
fig|6666666.229933.peg.583 CDS AJMF02000014.1 15296 14751 -2 - 546 Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase Biogenesis of c-type cytochromes;
Periplasmic disulfide interchange
fig|6666666.229933.peg.584 CDS AJMF02000014.1 17785 17267 -1 - 519 Cytochrome c-type biogenesis protein CcmE, heme chaperone Biogenesis of c-type cytochromes
fig|6666666.229933.peg.585 CDS AJMF02000014.1 17988 17782 -3 - 207 Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE Biogenesis of c-type cytochromes
fig|6666666.229933.peg.586 CDS AJMF02000014.1 18743 18006 -2 - 738 Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE Biogenesis of c-type cytochromes
fig|6666666.229933.peg.587 CDS AJMF02000014.1 19419 18754 -3 - 666 ABC transporter involved in cytochrome c biogenesis, CcmB subunit Biogenesis of c-type cytochromes
fig|6666666.229933.peg.588 CDS AJMF02000014.1 20059 19424 -1 - 636 ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA Biogenesis of c-type cytochromes
fig|6666666.229933.peg.589 CDS AJMF02000014.1 21424 20231 -1 - 1194 Bicyclomycin resistance protein - none -
fig|6666666.229933.peg.590 CDS AJMF02000014.1 22130 21429 -2 - 702 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses
fig|6666666.229933.peg.591 CDS AJMF02000014.1 22172 22354 2 + 183 hypothetical protein - none -
fig|6666666.229933.peg.592 CDS AJMF02000014.1 22347 24611 3 + 2265 NADP-dependent malic enzyme (EC 1.1.1.40) Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229933.peg.593 CDS AJMF02000014.1 24755 25399 2 + 645 Manganese superoxide dismutase (EC 1.15.1.1) Oxidative stress;
Protection from Reactive Oxygen Species
fig|6666666.229933.peg.594 CDS AJMF02000014.1 25810 26601 1 + 792 putative lipoprotein - none -
fig|6666666.229933.peg.595 CDS AJMF02000014.1 27632 26805 -2 - 828 YpfJ protein, zinc metalloprotease superfamily Broadly distributed proteins not in subsystems
fig|6666666.229933.peg.596 CDS AJMF02000014.1 27772 28215 1 + 444 FIG00904084: hypothetical protein - none -
fig|6666666.229933.peg.597 CDS AJMF02000014.1 28901 28305 -2 - 597 Acyl-phosphate:glycerol-3-phosphate O-acyltransferase PlsY Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229933.peg.598 CDS AJMF02000014.1 28998 29351 3 + 354 Dihydroneopterin aldolase (EC 4.1.2.25) Folate Biosynthesis;
Folate biosynthesis cluster
fig|6666666.229933.peg.599 CDS AJMF02000014.1 29372 30802 2 + 1431 Transglycosylase, Slt family - none -
fig|6666666.229933.peg.600 CDS AJMF02000014.1 30813 30959 3 + 147 hypothetical protein - none -
fig|6666666.229933.peg.601 CDS AJMF02000014.1 31541 31002 -2 - 540 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation Biogenesis of c-type cytochromes;
Periplasmic disulfide interchange
fig|6666666.229933.peg.602 CDS AJMF02000014.1 33109 31565 -1 - 1545 Na+/H+ antiporter NhaB - none -
fig|6666666.229933.peg.603 CDS AJMF02000014.1 33304 34035 1 + 732 Transcriptional regulator for fatty acid degradation FadR, GntR family - none -
fig|6666666.229933.peg.604 CDS AJMF02000014.1 35370 34156 -3 - 1215 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229933.peg.605 CDS AJMF02000014.1 35487 36791 3 + 1305 Menaquinone-specific isochorismate synthase (EC 5.4.4.2) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229933.peg.606 CDS AJMF02000014.1 36782 38488 2 + 1707 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase (EC 2.2.1.9) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229933.peg.607 CDS AJMF02000014.1 38541 39290 3 + 750 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase (EC 4.2.99.20) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229933.peg.608 CDS AJMF02000014.1 39386 39655 2 + 270 SSU ribosomal protein S15p (S13e) Ribosome SSU bacterial
fig|6666666.229933.peg.609 CDS AJMF02000014.1 39863 41017 2 + 1155 S-adenosylmethionine synthetase (EC 2.5.1.6) Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229933.peg.610 CDS AJMF02000014.1 41086 41586 1 + 501 Protein sprT - none -
fig|6666666.229933.peg.611 CDS AJMF02000014.1 41743 42984 1 + 1242 Serine transporter Glycine and Serine Utilization;
Pyruvate Alanine Serine Interconversions
fig|6666666.229933.peg.612 CDS AJMF02000014.1 43077 44441 3 + 1365 L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17) Glycine and Serine Utilization;
Glycine and Serine Utilization;
Pyruvate Alanine Serine Interconversions;
Pyruvate Alanine Serine Interconversions
fig|6666666.229933.peg.613 CDS AJMF02000014.1 45671 44622 -2 - 1050 L-asparaginase (EC 3.5.1.1) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229933.peg.614 CDS AJMF02000014.1 45966 47105 3 + 1140 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) CBSS-498211.3.peg.1415;
Conserved gene cluster associated with Met-tRNA formyltransferase;
RNA methylation
fig|6666666.229933.peg.615 CDS AJMF02000014.1 47127 47678 3 + 552 Type IV pilus biogenesis protein PilF CBSS-498211.3.peg.1415
fig|6666666.229933.peg.616 CDS AJMF02000014.1 47822 48877 2 + 1056 FIG021952: putative membrane protein CBSS-498211.3.peg.1415
fig|6666666.229933.peg.617 CDS AJMF02000014.1 48889 49992 1 + 1104 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (EC 1.17.7.1) CBSS-498211.3.peg.1415;
CBSS-83331.1.peg.3039;
Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.229933.peg.618 CDS AJMF02000014.1 50014 51291 1 + 1278 Histidyl-tRNA synthetase (EC 6.1.1.21) CBSS-498211.3.peg.1415;
tRNA aminoacylation, His
fig|6666666.229933.peg.619 CDS AJMF02000014.1 51302 51916 2 + 615 Mlr7403 protein CBSS-290633.1.peg.1906;
CBSS-498211.3.peg.1415
fig|6666666.229933.peg.620 CDS AJMF02000014.1 51969 52421 3 + 453 Putative protein-S-isoprenylcysteine methyltransferase - none -
fig|6666666.229933.peg.621 CDS AJMF02000014.1 53131 52427 -1 - 705 Chromosomal replication initiator protein DnaA Cell Division Subsystem including YidCD;
DNA replication cluster 1
fig|6666666.229933.peg.622 CDS AJMF02000014.1 53117 53254 2 + 138 hypothetical protein - none -
fig|6666666.229933.peg.623 CDS AJMF02000014.1 54504 53251 -3 - 1254 Uracil permease De Novo Pyrimidine Synthesis
fig|6666666.229933.peg.624 CDS AJMF02000014.1 55254 54628 -3 - 627 Uracil phosphoribosyltransferase (EC 2.4.2.9) De Novo Pyrimidine Synthesis;
pyrimidine conversions
fig|6666666.229933.peg.625 CDS AJMF02000014.1 57236 55389 -2 - 1848 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase
fig|6666666.229933.peg.626 CDS AJMF02000014.1 59642 57369 -2 - 2274 Glutathione biosynthesis bifunctional protein gshF (EC 6.3.2.2)(EC 6.3.2.3) Glutathione: Biosynthesis and gamma-glutamyl cycle
fig|6666666.229933.peg.627 CDS AJMF02000014.1 59874 61475 3 + 1602 Dca - none -
fig|6666666.229933.peg.628 CDS AJMF02000014.1 61717 62298 1 + 582 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent;
cAMP signaling in bacteria
fig|6666666.229933.peg.629 CDS AJMF02000014.1 62308 63549 1 + 1242 ATP-dependent Clp protease ATP-binding subunit ClpX Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229933.peg.630 CDS AJMF02000014.1 63935 63612 -2 - 324 FIG074102: hypothetical protein - none -
fig|6666666.229933.peg.631 CDS AJMF02000014.1 64092 63928 -3 - 165 Phage-related protein - none -
fig|6666666.229933.peg.632 CDS AJMF02000014.1 65240 64395 -2 - 846 membrane protein, putative - none -
fig|6666666.229933.peg.633 CDS AJMF02000014.1 67472 65313 -2 - 2160 Copper-translocating P-type ATPase (EC 3.6.3.4) Copper Transport System;
Copper homeostasis
fig|6666666.229933.peg.634 CDS AJMF02000014.1 67771 67559 -1 - 213 Copper chaperone Copper homeostasis
fig|6666666.229933.peg.635 CDS AJMF02000014.1 67866 68252 3 + 387 Cu(I)-responsive transcriptional regulator Copper homeostasis
fig|6666666.229933.peg.636 CDS AJMF02000014.1 68390 68821 2 + 432 Type I restriction-modification system, DNA-methyltransferase subunit M (EC 2.1.1.72) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229933.peg.637 CDS AJMF02000014.1 68844 69800 3 + 957 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229933.peg.638 CDS AJMF02000014.1 70964 70128 -2 - 837 COG1720: Uncharacterized conserved protein tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229933.peg.639 CDS AJMF02000014.1 71092 71997 1 + 906 1,4-dihydroxy-2-naphthoate polyprenyltransferase (EC 2.5.1.74) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229933.peg.640 CDS AJMF02000014.1 72048 72548 3 + 501 Ribonuclease E inhibitor RraA RNA processing and degradation, bacterial
fig|6666666.229933.peg.641 CDS AJMF02000014.1 72737 74119 2 + 1383 Arsenic efflux pump protein Arsenic resistance
fig|6666666.229933.peg.642 CDS AJMF02000014.1 74722 74189 -1 - 534 FIG138315: Putative alpha helix protein Putative TldE-TldD proteolytic complex
fig|6666666.229933.peg.643 CDS AJMF02000014.1 74843 76204 2 + 1362 TldE protein, part of TldE/TldD proteolytic complex Putative TldE-TldD proteolytic complex
fig|6666666.229933.peg.644 CDS AJMF02000014.1 76443 76982 3 + 540 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) Cell division-ribosomal stress proteins cluster;
Folate biosynthesis cluster;
Purine conversions
fig|6666666.229933.peg.645 CDS AJMF02000014.1 78191 77052 -2 - 1140 Glycerate kinase (EC 2.7.1.31) D-galactarate, D-glucarate and D-glycerate catabolism;
D-galactarate, D-glucarate and D-glycerate catabolism - gjo;
Glycerate metabolism;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Glycine and Serine Utilization
fig|6666666.229933.peg.646 CDS AJMF02000014.1 79462 78188 -1 - 1275 D-glycerate transporter (predicted) D-galactarate, D-glucarate and D-glycerate catabolism;
D-galactarate, D-glucarate and D-glycerate catabolism - gjo;
Glycerate metabolism
fig|6666666.229933.peg.647 CDS AJMF02000014.1 80697 79594 -3 - 1104 Sugar diacid utilization regulator SdaR D-galactarate, D-glucarate and D-glycerate catabolism;
D-galactarate, D-glucarate and D-glycerate catabolism - gjo
fig|6666666.229933.peg.648 CDS AJMF02000014.1 81002 81577 2 + 576 UDP-glucose dehydrogenase (EC 1.1.1.22) - none -
fig|6666666.229933.peg.649 CDS AJMF02000014.1 83502 81691 -3 - 1812 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) - none -
fig|6666666.229933.peg.650 CDS AJMF02000014.1 84516 83614 -3 - 903 Lipoprotein nlpI precursor - none -
fig|6666666.229933.peg.651 CDS AJMF02000014.1 86832 84601 -3 - 2232 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) Bacterial RNA-metabolizing Zn-dependent hydrolases;
Polyadenylation bacterial
fig|6666666.229933.peg.652 CDS AJMF02000014.1 87024 87494 3 + 471 Putative sugar isomerase involved in processing of exogenous sialic acid Sialic Acid Metabolism
fig|6666666.229933.peg.653 CDS AJMF02000014.1 88621 87968 -1 - 654 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD Recycling of Peptidoglycan Amino Acids
fig|6666666.229933.peg.654 CDS AJMF02000014.1 88644 89096 3 + 453 Type IV pilin PilA Type IV pilus
fig|6666666.229933.peg.655 CDS AJMF02000014.1 89123 90532 2 + 1410 Type IV fimbrial assembly, ATPase PilB Type IV pilus
fig|6666666.229933.peg.656 CDS AJMF02000014.1 90525 91748 3 + 1224 Type II secretory pathway, component PulF / Type IV fimbrial assembly protein PilC Type IV pilus
fig|6666666.229933.peg.657 CDS AJMF02000014.1 91748 92434 2 + 687 Leader peptidase (Prepilin peptidase) (EC 3.4.23.43) / N-methyltransferase (EC 2.1.1.-) Type IV pilus;
Type IV pilus
fig|6666666.229933.peg.658 CDS AJMF02000014.1 92484 93107 3 + 624 Dephospho-CoA kinase (EC 2.7.1.24) Coenzyme A Biosynthesis
fig|6666666.229933.peg.659 CDS AJMF02000014.1 93097 93309 1 + 213 FIG003276: zinc-binding protein - none -
fig|6666666.229933.peg.660 CDS AJMF02000014.1 93309 93581 3 + 273 FIG00904058: hypothetical protein - none -
fig|6666666.229933.peg.661 CDS AJMF02000014.1 93978 95351 3 + 1374 Sodium/glycine symporter GlyP - none -
fig|6666666.229933.peg.662 CDS AJMF02000014.1 95579 95902 2 + 324 Ribosome hibernation protein YfiA Ribosome activity modulation
fig|6666666.229933.peg.663 CDS AJMF02000014.1 96357 96605 3 + 249 unknown - none -
fig|6666666.229933.peg.664 CDS AJMF02000014.1 97520 97221 -2 - 300 DNA-binding protein Fis DNA structural proteins, bacterial
fig|6666666.229933.peg.665 CDS AJMF02000014.1 98116 97514 -1 - 603 tRNA dihydrouridine synthase B (EC 1.-.-.-) tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229933.peg.666 CDS AJMF02000014.1 98562 98110 -3 - 453 tRNA dihydrouridine synthase B (EC 1.-.-.-) tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229933.peg.667 CDS AJMF02000014.1 99691 98807 -1 - 885 Ribosomal protein L11 methyltransferase (EC 2.1.1.-) Heat shock dnaK gene cluster extended;
Ribosome biogenesis bacterial
fig|6666666.229933.peg.668 CDS AJMF02000014.1 100153 99704 -1 - 450 Protein involved in cell division - none -
fig|6666666.229933.peg.669 CDS AJMF02000014.1 101701 100265 -1 - 1437 Pantothenate:Na+ symporter (TC 2.A.21.1.1) CBSS-221988.1.peg.1679;
Coenzyme A Biosynthesis
fig|6666666.229933.peg.670 CDS AJMF02000014.1 101970 101698 -3 - 273 FIG003021: Membrane protein CBSS-221988.1.peg.1679
fig|6666666.229933.peg.671 CDS AJMF02000014.1 103382 101994 -2 - 1389 FOG: TPR repeat - none -
fig|6666666.229933.peg.672 CDS AJMF02000014.1 104437 104303 -1 - 135 hypothetical protein - none -
fig|6666666.229933.peg.673 CDS AJMF02000014.1 105892 104546 -1 - 1347 Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14) CBSS-221988.1.peg.1679;
Fatty Acid Biosynthesis FASII
fig|6666666.229933.peg.674 CDS AJMF02000014.1 106402 105935 -1 - 468 Biotin carboxyl carrier protein of acetyl-CoA carboxylase CBSS-221988.1.peg.1679;
Fatty Acid Biosynthesis FASII
fig|6666666.229933.peg.675 CDS AJMF02000014.1 106419 106571 3 + 153 hypothetical protein - none -
fig|6666666.229933.peg.676 CDS AJMF02000014.1 107002 106526 -1 - 477 3-dehydroquinate dehydratase II (EC 4.2.1.10) CBSS-221988.1.peg.1679;
Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate);
Quinate degradation
fig|6666666.229933.peg.677 CDS AJMF02000014.1 108102 107101 -3 - 1002 O-succinylbenzoate synthase (EC 4.2.1.113) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo;
Muconate lactonizing enzyme family
fig|6666666.229933.peg.678 CDS AJMF02000014.1 108412 108083 -1 - 330 Nucleotidyltransferase (EC 2.7.7.-) - none -
fig|6666666.229933.peg.679 CDS AJMF02000014.1 108813 108394 -3 - 420 Nucleotidyltransferase substrate binding protein, HI0074 - none -
fig|6666666.229933.peg.680 CDS AJMF02000014.1 109710 108853 -3 - 858 Naphthoate synthase (EC 4.1.3.36) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229933.peg.681 CDS AJMF02000014.1 110589 109822 -3 - 768 Triosephosphate isomerase (EC 5.3.1.1) CBSS-331978.3.peg.2915;
Glycolysis and Gluconeogenesis
fig|6666666.229933.peg.682 CDS AJMF02000014.1 110762 111205 2 + 444 Histone acetyltransferase HPA2 and related acetyltransferases CBSS-216591.1.peg.168
fig|6666666.229933.peg.683 CDS AJMF02000014.1 112646 111279 -2 - 1368 Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22) Heme and Siroheme Biosynthesis
fig|6666666.229933.peg.684 CDS AJMF02000014.1 113099 112665 -2 - 435 Periplasmic/membrane protein associated with DUF414 - none -
fig|6666666.229933.peg.685 CDS AJMF02000014.1 113672 113112 -2 - 561 Protein of unknown function DUF414 - none -
fig|6666666.229933.peg.686 CDS AJMF02000014.1 114300 113773 -3 - 528 tRNA-specific adenosine-34 deaminase (EC 3.5.4.-) tRNA modification Bacteria;
tRNA processing;
tRNAmodification position 34
fig|6666666.229933.peg.687 CDS AJMF02000014.1 115477 114626 -1 - 852 Thymidylate synthase (EC 2.1.1.45) Folate Biosynthesis;
pyrimidine conversions
fig|6666666.229933.peg.688 CDS AJMF02000014.1 116271 115474 -3 - 798 Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-) Lipoprotein Biosynthesis
fig|6666666.229933.peg.689 CDS AJMF02000014.1 117077 116280 -2 - 798 Protein of unknown function DUF81 - none -
fig|6666666.229933.peg.690 CDS AJMF02000014.1 117679 117080 -1 - 600 Adenosine (5@1)-pentaphospho-(5@1@1)-adenosine pyrophosphohydrolase (EC 3.6.1.-) CBSS-224911.1.peg.435;
CBSS-364106.7.peg.3204;
Nudix proteins (nucleoside triphosphate hydrolases);
Phosphoglycerate mutase protein family
fig|6666666.229933.peg.691 CDS AJMF02000014.1 117899 118318 2 + 420 Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229933.peg.692 CDS AJMF02000014.1 118329 119837 3 + 1509 Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229933.peg.693 CDS AJMF02000014.1 119834 120730 2 + 897 Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229933.peg.694 CDS AJMF02000014.1 120820 121692 1 + 873 Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229933.peg.695 CDS AJMF02000014.1 121692 121823 3 + 132 hypothetical protein - none -
fig|6666666.229933.peg.696 CDS AJMF02000014.1 121775 122707 2 + 933 Ribokinase (EC 2.7.1.15) D-ribose utilization;
Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.229933.peg.697 CDS AJMF02000014.1 123014 122805 -2 - 210 Cold shock protein CspG Cold shock, CspA family of proteins
fig|6666666.229933.peg.698 CDS AJMF02000014.1 124906 123461 -1 - 1446 Glutamyl-tRNA synthetase (EC 6.1.1.17) Heme and Siroheme Biosynthesis;
tRNA aminoacylation, Glu and Gln
fig|6666666.229933.peg.699 CDS AJMF02000014.1 125480 126268 2 + 789 Mannosyltransferase OCH1 and related enzymes - none -
fig|6666666.229933.peg.700 CDS AJMF02000014.1 126381 127757 3 + 1377 Argininosuccinate lyase (EC 4.3.2.1) - none -
fig|6666666.229933.peg.701 CDS AJMF02000014.1 128059 129408 1 + 1350 NADP-specific glutamate dehydrogenase (EC 1.4.1.4) Arginine and Ornithine Degradation;
Glutamate dehydrogenases;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Proline Synthesis
fig|6666666.229933.peg.702 CDS AJMF02000014.1 129897 131351 3 + 1455 Catalase (EC 1.11.1.6) Oxidative stress;
Protection from Reactive Oxygen Species
fig|6666666.229933.peg.703 CDS AJMF02000014.1 132182 132024 -2 - 159 hypothetical protein - none -
fig|6666666.229933.peg.704 CDS AJMF02000015.1 2203 101 -1 - 2103 Translation elongation factor G Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Translation elongation factor G family;
Translation elongation factors bacterial;
Universal GTPases
fig|6666666.229933.peg.705 CDS AJMF02000015.1 2788 2318 -1 - 471 SSU ribosomal protein S7p (S5e) Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Ribosome SSU bacterial
fig|6666666.229933.peg.706 CDS AJMF02000015.1 3078 2941 -3 - 138 SSU ribosomal protein S12p (S23e) Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Ribosomal protein S12p Asp methylthiotransferase;
Ribosome SSU bacterial
fig|6666666.229933.peg.707 CDS AJMF02000015.1 3373 3257 -1 - 117 SSU ribosomal protein S12p (S23e) Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Ribosomal protein S12p Asp methylthiotransferase;
Ribosome SSU bacterial
fig|6666666.229933.peg.708 CDS AJMF02000015.1 3836 3537 -2 - 300 Ketol-acid reductoisomerase (EC 1.1.1.86) Coenzyme A Biosynthesis
fig|6666666.229933.peg.709 CDS AJMF02000015.1 4477 4662 1 + 186 HTH-type transcriptional regulator IlvY Alanine biosynthesis;
LysR-family proteins in Escherichia coli;
LysR-family proteins in Salmonella enterica Typhimurium
fig|6666666.229933.peg.710 CDS AJMF02000015.1 4695 5576 3 + 882 Protein rarD - none -
fig|6666666.229933.peg.711 CDS AJMF02000015.1 6371 5571 -2 - 801 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) Chorismate Synthesis;
Cluster containing Alanyl-tRNA synthetase;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229933.peg.712 CDS AJMF02000015.1 6926 6375 -2 - 552 TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA - none -
fig|6666666.229933.peg.713 CDS AJMF02000015.1 7479 6931 -3 - 549 Similar to C-terminal Zn-finger domain of DNA topoisomerase I Conserved gene cluster associated with Met-tRNA formyltransferase;
DNA topoisomerases, Type I, ATP-independent
fig|6666666.229933.peg.714 CDS AJMF02000015.1 7482 9236 3 + 1755 DNA recombination protein RmuC DNA repair, bacterial
fig|6666666.229933.peg.715 CDS AJMF02000015.1 9361 9909 1 + 549 FIG00903983: hypothetical protein - none -
fig|6666666.229933.peg.716 CDS AJMF02000015.1 9921 10247 3 + 327 Thiosulfate sulfurtransferase GlpE (EC 2.8.1.1) Single-Rhodanese-domain proteins
fig|6666666.229933.peg.717 CDS AJMF02000015.1 10573 10259 -1 - 315 Uncharacterized protein PM1437 - none -
fig|6666666.229933.peg.718 CDS AJMF02000015.1 10616 11491 2 + 876 GlpG protein (membrane protein of glp regulon) - none -
fig|6666666.229933.peg.719 CDS AJMF02000015.1 11553 12308 3 + 756 Glycerol-3-phosphate regulon repressor GlpR - none -
fig|6666666.229933.peg.720 CDS AJMF02000015.1 12652 15378 1 + 2727 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229933.peg.721 CDS AJMF02000015.1 17785 15968 -1 - 1818 ABC transporter ATP-binding protein - none -
fig|6666666.229933.peg.722 CDS AJMF02000015.1 17909 19567 2 + 1659 Mediator of hyperadherence YidE - none -
fig|6666666.229933.peg.723 CDS AJMF02000015.1 19666 19535 -1 - 132 hypothetical protein - none -
fig|6666666.229933.peg.724 CDS AJMF02000015.1 19724 20437 2 + 714 Uridine monophosphate kinase (EC 2.7.4.22) CBSS-312309.3.peg.1965;
Ribosome recycling related cluster
fig|6666666.229933.peg.725 CDS AJMF02000015.1 20505 20648 3 + 144 hypothetical protein - none -
fig|6666666.229933.peg.726 CDS AJMF02000015.1 20662 21219 1 + 558 Ribosome recycling factor Ribosome recycling related cluster;
Translation termination factors bacterial
fig|6666666.229933.peg.727 CDS AJMF02000015.1 21248 22531 2 + 1284 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.267) CBSS-83331.1.peg.3039;
Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.229933.peg.728 CDS AJMF02000015.1 22553 23272 2 + 720 Undecaprenyl diphosphate synthase (EC 2.5.1.31) CBSS-83331.1.peg.3039;
Isoprenoid Biosynthesis;
Isoprenoinds for Quinones;
Polyprenyl Diphosphate Biosynthesis
fig|6666666.229933.peg.729 CDS AJMF02000015.1 23287 24156 1 + 870 Phosphatidate cytidylyltransferase (EC 2.7.7.41) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229933.peg.730 CDS AJMF02000015.1 24165 25499 3 + 1335 Membrane-associated zinc metalloprotease - none -
fig|6666666.229933.peg.731 CDS AJMF02000015.1 25518 27929 3 + 2412 Outer membrane protein assembly factor YaeT precursor Lipopolysaccharide assembly;
Llipid A biosynthesis cluster
fig|6666666.229933.peg.732 CDS AJMF02000015.1 28032 28607 3 + 576 Outer membrane chaperone Skp (OmpH) precursor @ Outer membrane protein H precursor Lipopolysaccharide assembly;
Llipid A biosynthesis cluster;
Periplasmic Stress Response
fig|6666666.229933.peg.733 CDS AJMF02000015.1 28607 29629 2 + 1023 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC 2.3.1.191) - none -
fig|6666666.229933.peg.734 CDS AJMF02000015.1 29766 30176 3 + 411 3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabZ form (EC 4.2.1.59) Fatty Acid Biosynthesis FASII;
Llipid A biosynthesis cluster
fig|6666666.229933.peg.735 CDS AJMF02000015.1 30197 30985 2 + 789 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase (EC 2.3.1.129) KDO2-Lipid A biosynthesis;
Llipid A biosynthesis cluster
fig|6666666.229933.peg.736 CDS AJMF02000015.1 31070 32254 2 + 1185 Lipid-A-disaccharide synthase (EC 2.4.1.182) KDO2-Lipid A biosynthesis;
Llipid A biosynthesis cluster
fig|6666666.229933.peg.737 CDS AJMF02000015.1 32247 32846 3 + 600 Ribonuclease HII (EC 3.1.26.4) Conserved gene cluster associated with Met-tRNA formyltransferase;
Ribonuclease H
fig|6666666.229933.peg.738 CDS AJMF02000015.1 32886 34322 3 + 1437 Putative transport protein - none -
fig|6666666.229933.peg.739 CDS AJMF02000015.1 34313 34687 2 + 375 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229933.peg.740 CDS AJMF02000015.1 34687 35616 1 + 930 Phosphatidate cytidylyltransferase (EC 2.7.7.41) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229933.peg.741 CDS AJMF02000015.1 35706 36287 3 + 582 Molybdopterin biosynthesis molybdochelatase MogA Molybdenum cofactor biosynthesis
fig|6666666.229933.peg.742 CDS AJMF02000015.1 36966 36850 -3 - 117 hypothetical protein - none -
fig|6666666.229933.peg.743 CDS AJMF02000016.1 382 179 -1 - 204 Osmotically inducible lipoprotein B precursor Osmotic stress cluster
fig|6666666.229933.peg.744 CDS AJMF02000016.1 1401 469 -3 - 933 Biotin operon repressor / Biotin-protein ligase (EC 6.3.4.15) Biotin biosynthesis;
Biotin biosynthesis;
Biotin synthesis cluster;
Biotin synthesis cluster
fig|6666666.229933.peg.745 CDS AJMF02000016.1 1543 3009 1 + 1467 Inosine-5@1-monophosphate dehydrogenase (EC 1.1.1.205) Purine conversions;
Purine salvage cluster
fig|6666666.229933.peg.746 CDS AJMF02000016.1 3366 4307 3 + 942 DNA polymerase IV (EC 2.7.7.7) DNA repair, bacterial
fig|6666666.229933.peg.747 CDS AJMF02000016.1 4477 5304 1 + 828 Dihydropteroate synthase (EC 2.5.1.15) Folate Biosynthesis;
Folate biosynthesis cluster
fig|6666666.229933.peg.748 CDS AJMF02000016.1 5333 6670 2 + 1338 Phosphoglucosamine mutase (EC 5.4.2.10) Sialic Acid Metabolism;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229933.peg.749 CDS AJMF02000016.1 6683 7150 2 + 468 Phosphohistidine phosphatase SixA - none -
fig|6666666.229933.peg.750 CDS AJMF02000016.1 7374 7910 3 + 537 FIG00696317: hypothetical protein - none -
fig|6666666.229933.peg.751 CDS AJMF02000016.1 8604 7942 -3 - 663 Septum site-determining protein MinC Bacterial Cell Division;
Bacterial Cytoskeleton;
Septum site-determining cluster Min
fig|6666666.229933.peg.752 CDS AJMF02000016.1 8688 8939 3 + 252 Protein YcgL CBSS-243277.1.peg.4359
fig|6666666.229933.peg.753 CDS AJMF02000016.1 9845 9336 -2 - 510 probable lipoprotein NlpC - none -
fig|6666666.229933.peg.754 CDS AJMF02000016.1 10880 10065 -2 - 816 2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase (EC 2.5.1.55) A Gammaproteobacteria Cluster Relating to Translation;
KDO2-Lipid A biosynthesis
fig|6666666.229933.peg.755 CDS AJMF02000016.1 11789 10890 -2 - 900 Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2 A Gammaproteobacteria Cluster Relating to Translation;
CBSS-216600.3.peg.802;
Translation termination factors bacterial;
YrdC-YciO-Sua5 protein family
fig|6666666.229933.peg.756 CDS AJMF02000016.1 12911 11829 -2 - 1083 Peptide chain release factor 1 A Gammaproteobacteria Cluster Relating to Translation;
CBSS-216600.3.peg.802;
Translation termination factors bacterial;
YrdC-YciO-Sua5 protein family
fig|6666666.229933.peg.757 CDS AJMF02000016.1 13172 13050 -2 - 123 Outer membrane lipoprotein - none -
fig|6666666.229933.peg.758 CDS AJMF02000016.1 26244 25657 -3 - 588 Protein yecM - none -
fig|6666666.229933.peg.759 CDS AJMF02000016.1 26341 28074 1 + 1734 Arginyl-tRNA synthetase (EC 6.1.1.19) tRNA aminoacylation, Arg
fig|6666666.229933.peg.760 CDS AJMF02000016.1 29867 28434 -2 - 1434 Putative GTP-binding protein YdgA - none -
fig|6666666.229933.peg.761 CDS AJMF02000016.1 30153 32054 3 + 1902 Chaperone protein DnaK GroEL GroES;
Heat shock dnaK gene cluster extended;
Protein chaperones
fig|6666666.229933.peg.762 CDS AJMF02000016.1 32489 33616 2 + 1128 Chaperone protein DnaJ GroEL GroES;
Heat shock dnaK gene cluster extended;
Protein chaperones
fig|6666666.229933.peg.763 CDS AJMF02000016.1 33921 33694 -3 - 228 Programmed cell death toxin ChpB - none -
fig|6666666.229933.peg.764 CDS AJMF02000016.1 35117 34065 -2 - 1053 Outer membrane protein P2 precursor (OMP P2) - none -
fig|6666666.229933.peg.765 CDS AJMF02000016.1 36521 35331 -2 - 1191 Cystathionine beta-lyase (EC 4.4.1.8) Methionine Biosynthesis
fig|6666666.229933.peg.766 CDS AJMF02000016.1 36776 37333 2 + 558 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229933.peg.767 CDS AJMF02000016.1 37860 38372 3 + 513 Chromosome partitioning ATPase in PFGI-1-like cluster, ParA-like - none -
fig|6666666.229933.peg.768 CDS AJMF02000016.1 38359 38685 1 + 327 FIG00698325: hypothetical protein - none -
fig|6666666.229933.peg.769 CDS AJMF02000016.1 40378 39818 -1 - 561 Cytolethal distending toxin subunit C Cytolethal distending toxin of Campylobacter jejuni;
Cytolethal distending toxins
fig|6666666.229933.peg.770 CDS AJMF02000016.1 41240 40389 -2 - 852 Cytolethal distending toxin subunit B Cytolethal distending toxin of Campylobacter jejuni;
Cytolethal distending toxins
fig|6666666.229933.peg.771 CDS AJMF02000016.1 41923 41255 -1 - 669 Cytolethal distending toxin subunit A Cytolethal distending toxin of Campylobacter jejuni;
Cytolethal distending toxins
fig|6666666.229933.peg.772 CDS AJMF02000016.1 42408 42193 -3 - 216 Virulence plasmid protein - none -
fig|6666666.229933.peg.773 CDS AJMF02000016.1 43134 42508 -3 - 627 NAD-dependent protein deacetylase of SIR2 family Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229933.peg.774 CDS AJMF02000016.1 43797 43150 -3 - 648 Glutaredoxin 2 Glutaredoxins;
Glutathione: Redox cycle
fig|6666666.229933.peg.775 CDS AJMF02000016.1 45389 43914 -2 - 1476 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) Bacterial Cell Division;
CBSS-354.1.peg.2917;
RNA processing and degradation, bacterial
fig|6666666.229933.peg.776 CDS AJMF02000016.1 45528 47048 3 + 1521 Proline/sodium symporter PutP (TC 2.A.21.2.1) @ Propionate/sodium symporter - none -
fig|6666666.229933.peg.777 CDS AJMF02000016.1 47062 48027 1 + 966 tRNA (5-methoxyuridine) 34 synthase tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229933.peg.778 CDS AJMF02000016.1 48115 49413 1 + 1299 Adenylosuccinate synthetase (EC 6.3.4.4) Purine conversions
fig|6666666.229933.peg.779 CDS AJMF02000016.1 49768 49478 -1 - 291 hypothetical protein - none -
fig|6666666.229933.peg.780 CDS AJMF02000016.1 50774 49791 -2 - 984 DnaJ-class molecular chaperone CbpA Protein chaperones
fig|6666666.229933.peg.781 CDS AJMF02000016.1 51062 52594 2 + 1533 GTP-binding protein EngA CBSS-290633.1.peg.1906;
CBSS-498211.3.peg.1415;
Universal GTPases
fig|6666666.229933.peg.782 CDS AJMF02000016.1 53860 52664 -1 - 1197 Sugar efflux transporter SotB - none -
fig|6666666.229933.peg.783 CDS AJMF02000016.1 55064 53862 -2 - 1203 FIG00696476: hypothetical protein - none -
fig|6666666.229933.peg.784 CDS AJMF02000016.1 55649 55065 -2 - 585 Deoxycytidine triphosphate deaminase (EC 3.5.4.13) pyrimidine conversions
fig|6666666.229933.peg.785 CDS AJMF02000016.1 56309 55659 -2 - 651 Uridine kinase (EC 2.7.1.48) [C1] pyrimidine conversions
fig|6666666.229933.peg.786 CDS AJMF02000016.1 56618 57658 2 + 1041 Ferric iron ABC transporter, iron-binding protein Iron acquisition in Streptococcus
fig|6666666.229933.peg.787 CDS AJMF02000016.1 58111 58863 1 + 753 Ferric iron ABC transporter, iron-binding protein Iron acquisition in Streptococcus
fig|6666666.229933.peg.788 CDS AJMF02000016.1 58891 60948 1 + 2058 Ferric iron ABC transporter, permease protein Iron acquisition in Streptococcus
fig|6666666.229933.peg.789 CDS AJMF02000016.1 60964 62010 1 + 1047 Fe(3+) ions import ATP-binding protein fbpC (EC 3.6.3.30) - none -
fig|6666666.229933.peg.790 CDS AJMF02000016.1 62289 64400 3 + 2112 unknown - none -
fig|6666666.229933.peg.791 CDS AJMF02000016.1 65253 64453 -3 - 801 Inositol-1-monophosphatase (EC 3.1.3.25) - none -
fig|6666666.229933.peg.792 CDS AJMF02000016.1 65404 66144 1 + 741 tRNA:Cm32/Um32 methyltransferase RNA methylation;
tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229933.peg.793 CDS AJMF02000016.1 66206 66679 2 + 474 Iron-sulfur cluster regulator IscR Alanine biosynthesis;
Rrf2 family transcriptional regulators
fig|6666666.229933.peg.794 CDS AJMF02000016.1 66733 67947 1 + 1215 Cysteine desulfurase (EC 2.8.1.7), IscS subfamily Alanine biosynthesis;
Thiamin biosynthesis;
mnm5U34 biosynthesis bacteria;
tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229933.peg.795 CDS AJMF02000016.1 68007 68390 3 + 384 Iron-sulfur cluster assembly scaffold protein IscU Alanine biosynthesis;
tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229933.peg.796 CDS AJMF02000016.1 68522 68845 2 + 324 Iron binding protein IscA for iron-sulfur cluster assembly Alanine biosynthesis;
tRNA modification Bacteria
fig|6666666.229933.peg.797 CDS AJMF02000016.1 68857 69378 1 + 522 Chaperone protein HscB Protein chaperones;
tRNA modification Bacteria
fig|6666666.229933.peg.798 CDS AJMF02000016.1 69399 71258 3 + 1860 Chaperone protein HscA Alanine biosynthesis;
Protein chaperones;
tRNA modification Bacteria
fig|6666666.229933.peg.799 CDS AJMF02000016.1 71270 71611 2 + 342 Ferredoxin, 2Fe-2S Alanine biosynthesis;
Soluble cytochromes and functionally related electron carriers;
tRNA modification Bacteria
fig|6666666.229933.peg.800 CDS AJMF02000016.1 71611 71805 1 + 195 Believed to be involved in assembly of Fe-S clusters tRNA modification Bacteria
fig|6666666.229933.peg.801 CDS AJMF02000016.1 73999 71939 -1 - 2061 Methionyl-tRNA synthetase (EC 6.1.1.10) Scaffold proteins for [4Fe-4S] cluster assembly (MRP family);
tRNA aminoacylation, Met
fig|6666666.229933.peg.802 CDS AJMF02000016.1 74172 75284 3 + 1113 Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like Scaffold proteins for [4Fe-4S] cluster assembly (MRP family)
fig|6666666.229933.peg.803 CDS AJMF02000016.1 75381 75262 -3 - 120 hypothetical protein - none -
fig|6666666.229933.peg.804 CDS AJMF02000016.1 76519 75374 -1 - 1146 Beta-hexosaminidase (EC 3.2.1.52) Chitin and N-acetylglucosamine utilization
fig|6666666.229933.peg.805 CDS AJMF02000016.1 77080 76655 -1 - 426 Nucleoside diphosphate kinase (EC 2.7.4.6) CBSS-498211.3.peg.1415;
Purine conversions;
pyrimidine conversions
fig|6666666.229933.peg.806 CDS AJMF02000016.1 78399 77092 -3 - 1308 Peptidase B (EC 3.4.11.23) Aminopeptidases (EC 3.4.11.-)
fig|6666666.229933.peg.807 CDS AJMF02000016.1 78564 78442 -3 - 123 hypothetical protein - none -
fig|6666666.229933.peg.808 CDS AJMF02000016.1 78619 78837 1 + 219 Translation initiation factor 1 Translation initiation factors bacterial
fig|6666666.229933.peg.809 CDS AJMF02000016.1 80444 78900 -2 - 1545 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE Copper homeostasis: copper tolerance;
Lipoprotein Biosynthesis;
tRNA-methylthiotransferase containing cluster;
tRNA-methylthiotransferase containing cluster
fig|6666666.229933.peg.810 CDS AJMF02000016.1 81732 80836 -3 - 897 Magnesium and cobalt efflux protein CorC CBSS-56780.10.peg.1536;
Copper homeostasis: copper tolerance;
Glycyl-tRNA synthetase containing cluster;
Magnesium transport;
tRNA-methylthiotransferase containing cluster
fig|6666666.229933.peg.811 CDS AJMF02000016.1 81812 81940 2 + 129 hypothetical protein - none -
fig|6666666.229933.peg.812 CDS AJMF02000016.1 81978 82985 3 + 1008 [Citrate [pro-3S]-lyase] ligase (EC 6.2.1.22) Citrate Metabolism, Transport, and Regulation
fig|6666666.229933.peg.813 CDS AJMF02000016.1 83025 83312 3 + 288 Citrate lyase gamma chain, acyl carrier protein (EC 4.1.3.6) Citrate Metabolism, Transport, and Regulation
fig|6666666.229933.peg.814 CDS AJMF02000016.1 83309 84184 2 + 876 Citrate lyase beta chain (EC 4.1.3.6) Citrate Metabolism, Transport, and Regulation
fig|6666666.229933.peg.815 CDS AJMF02000016.1 84199 85701 1 + 1503 Citrate lyase alpha chain (EC 4.1.3.6) Citrate Metabolism, Transport, and Regulation
fig|6666666.229933.peg.816 CDS AJMF02000016.1 85895 87307 2 + 1413 2-(5@1@1-triphosphoribosyl)-3@1-dephosphocoenzyme-A synthase (EC 2.7.8.25) Citrate Metabolism, Transport, and Regulation
fig|6666666.229933.peg.817 CDS AJMF02000016.1 87294 88727 3 + 1434 2-oxoglutarate/malate translocator - none -
fig|6666666.229933.peg.818 CDS AJMF02000016.1 89006 90505 2 + 1500 Putative ATP /GTP binding protein - none -
fig|6666666.229933.peg.819 CDS AJMF02000016.1 91801 90770 -1 - 1032 Aldose 1-epimerase (EC 5.1.3.3) Lactose and Galactose Uptake and Utilization;
Maltose and Maltodextrin Utilization
fig|6666666.229933.peg.820 CDS AJMF02000016.1 92949 91795 -3 - 1155 Galactokinase (EC 2.7.1.6) Lactose and Galactose Uptake and Utilization
fig|6666666.229933.peg.821 CDS AJMF02000016.1 93996 93016 -3 - 981 Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10) Lactose and Galactose Uptake and Utilization
fig|6666666.229933.peg.822 CDS AJMF02000016.1 94310 95323 2 + 1014 Galactose operon repressor, GalR-LacI family of transcriptional regulators Lactose and Galactose Uptake and Utilization
fig|6666666.229933.peg.823 CDS AJMF02000016.1 95538 96497 3 + 960 Galactose/methyl galactoside ABC transport system, D-galactose-binding periplasmic protein MglB (TC 3.A.1.2.3) Bacterial Chemotaxis;
Lactose and Galactose Uptake and Utilization
fig|6666666.229933.peg.824 CDS AJMF02000016.1 96604 96873 1 + 270 Galactose/methyl galactoside ABC transport system, ATP-binding protein MglA (EC 3.6.3.17) Lactose and Galactose Uptake and Utilization
fig|6666666.229933.peg.825 CDS AJMF02000016.1 96895 98142 1 + 1248 Galactose/methyl galactoside ABC transport system, ATP-binding protein MglA (EC 3.6.3.17) Lactose and Galactose Uptake and Utilization
fig|6666666.229933.peg.826 CDS AJMF02000016.1 98161 98844 1 + 684 Galactose/methyl galactoside ABC transport system, permease protein MglC (TC 3.A.1.2.3) Lactose and Galactose Uptake and Utilization
fig|6666666.229933.peg.827 CDS AJMF02000016.1 98826 99173 3 + 348 Galactose/methyl galactoside ABC transport system, permease protein MglC (TC 3.A.1.2.3) Lactose and Galactose Uptake and Utilization
fig|6666666.229933.peg.828 CDS AJMF02000016.1 101094 99247 -3 - 1848 Aerobic respiration control sensor protein arcB (EC 2.7.3.-) - none -
fig|6666666.229933.peg.829 CDS AJMF02000016.1 102455 101235 -2 - 1221 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41) Fatty Acid Biosynthesis FASII
fig|6666666.229933.peg.830 CDS AJMF02000016.1 102625 104643 1 + 2019 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) CBSS-354.1.peg.876;
RNA methylation;
Riboflavin, FMN and FAD metabolism in plants;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229933.peg.831 CDS AJMF02000016.1 104833 106419 1 + 1587 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229933.peg.832 CDS AJMF02000016.1 106419 107903 3 + 1485 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229933.peg.833 CDS AJMF02000016.1 108592 108014 -1 - 579 Heat shock protein GrpE GroEL GroES;
Heat shock dnaK gene cluster extended;
Protein chaperones
fig|6666666.229933.peg.834 CDS AJMF02000016.1 108560 108688 2 + 129 hypothetical protein - none -
fig|6666666.229933.peg.835 CDS AJMF02000016.1 108733 109650 1 + 918 NAD kinase (EC 2.7.1.23) NAD and NADP cofactor biosynthesis global
fig|6666666.229933.peg.836 CDS AJMF02000016.1 109724 111400 2 + 1677 DNA repair protein RecN DNA repair, bacterial
fig|6666666.229933.peg.837 CDS AJMF02000016.1 112065 111418 -3 - 648 Outer membrane protein W precursor - none -
fig|6666666.229933.peg.838 CDS AJMF02000016.1 112151 112303 2 + 153 hypothetical protein - none -
fig|6666666.229933.peg.839 CDS AJMF02000016.1 112337 113095 2 + 759 Membrane protein involved in the export of O-antigen and teichoic acid - none -
fig|6666666.229933.peg.840 CDS AJMF02000016.1 113101 113652 1 + 552 Intracellular septation protein IspA CBSS-211586.9.peg.2729;
Intracellular septation in Enterobacteria
fig|6666666.229933.peg.841 CDS AJMF02000016.1 113656 114126 1 + 471 Acyl-CoA thioesterase YciA, involved in membrane biogenesis CBSS-211586.9.peg.2729;
Intracellular septation in Enterobacteria
fig|6666666.229933.peg.842 CDS AJMF02000016.1 114129 114425 3 + 297 YciL protein Broadly distributed proteins not in subsystems;
CBSS-211586.9.peg.2729
fig|6666666.229933.peg.843 CDS AJMF02000016.1 114871 117087 1 + 2217 Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) Murein Hydrolases
fig|6666666.229933.peg.844 CDS AJMF02000016.1 117120 117428 3 + 309 Transcriptional repressor protein TrpR Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate);
Tryptophan synthesis
fig|6666666.229933.peg.845 CDS AJMF02000016.1 117406 118179 1 + 774 Monofunctional biosynthetic peptidoglycan transglycosylase (EC 2.4.2.-) Peptidoglycan Biosynthesis
fig|6666666.229933.peg.846 CDS AJMF02000016.1 118690 118436 -1 - 255 hypothetical protein - none -
fig|6666666.229933.peg.847 CDS AJMF02000016.1 119224 118874 -1 - 351 Preprotein translocase subunit SecG (TC 3.A.5.1.1) CBSS-331978.3.peg.2915;
Murein hydrolase regulation and cell death
fig|6666666.229933.peg.848 CDS AJMF02000016.1 119371 119240 -1 - 132 hypothetical protein - none -
fig|6666666.229933.peg.849 CDS AJMF02000016.1 121322 119385 -2 - 1938 DNA topoisomerase III (EC 5.99.1.2) DNA processing cluster;
DNA topoisomerases, Type I, ATP-independent
fig|6666666.229933.peg.850 CDS AJMF02000016.1 121956 121354 -3 - 603 Recombination protein RecR DNA processing cluster;
DNA repair, bacterial RecFOR pathway
fig|6666666.229933.peg.851 CDS AJMF02000016.1 122484 122041 -3 - 444 FIG000557: hypothetical protein co-occurring with RecR DNA processing cluster
fig|6666666.229933.peg.852 CDS AJMF02000016.1 122555 123625 2 + 1071 Phosphoesterase (EC 3.1.-.-) - none -
fig|6666666.229933.peg.853 CDS AJMF02000016.1 123696 124589 3 + 894 Iron(III) dicitrate transport system, periplasmic iron-binding protein FecB (TC 3.A.1.14.1) - none -
fig|6666666.229933.peg.854 CDS AJMF02000016.1 124589 125578 2 + 990 Iron(III) dicitrate transport system permease protein FecC (TC 3.A.1.14.1) - none -
fig|6666666.229933.peg.855 CDS AJMF02000016.1 125578 126561 1 + 984 Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1) - none -
fig|6666666.229933.peg.856 CDS AJMF02000016.1 126561 127328 3 + 768 Iron(III) dicitrate transport ATP-binding protein FecE (TC 3.A.1.14.1) - none -
fig|6666666.229933.peg.857 CDS AJMF02000016.1 128365 127394 -1 - 972 Translation elongation factor P Lys34:lysine transferase Translation elongation factor P lysylation
fig|6666666.229933.peg.858 CDS AJMF02000016.1 128673 130481 3 + 1809 Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) Succinate dehydrogenase
fig|6666666.229933.peg.859 CDS AJMF02000016.1 130486 131256 1 + 771 Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) 5-FCL-like protein;
Succinate dehydrogenase
fig|6666666.229933.peg.860 CDS AJMF02000016.1 131268 131660 3 + 393 Fumarate reductase subunit C Succinate dehydrogenase
fig|6666666.229933.peg.861 CDS AJMF02000016.1 131670 132014 3 + 345 Fumarate reductase subunit D Succinate dehydrogenase
fig|6666666.229933.peg.862 CDS AJMF02000016.1 134258 132111 -2 - 2148 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) RNA methylation
fig|6666666.229933.peg.863 CDS AJMF02000016.1 134529 135557 3 + 1029 Alcohol dehydrogenase (EC 1.1.1.1) 5-FCL-like protein;
Butanol Biosynthesis;
Fermentations: Mixed acid;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229933.peg.864 CDS AJMF02000016.1 136850 135636 -2 - 1215 ATPase component BioM of energizing module of biotin ECF transporter Biotin biosynthesis;
Biotin synthesis cluster;
ECF class transporters
fig|6666666.229933.peg.865 CDS AJMF02000016.1 137673 136975 -3 - 699 Queuosine Biosynthesis QueC ATPase Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229933.peg.866 CDS AJMF02000016.1 137844 137707 -3 - 138 Queuosine Biosynthesis QueC ATPase Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229933.peg.867 CDS AJMF02000016.1 138028 138492 1 + 465 FIG00710847: hypothetical protein - none -
fig|6666666.229933.peg.868 CDS AJMF02000016.1 138465 139289 3 + 825 FIG00711691: hypothetical protein - none -
fig|6666666.229933.peg.869 CDS AJMF02000016.1 140624 139800 -2 - 825 3@1,5@1-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17) cAMP signaling in bacteria
fig|6666666.229933.peg.870 CDS AJMF02000016.1 141298 140675 -1 - 624 ADP-ribose pyrophosphatase (EC 3.6.1.13) CBSS-216591.1.peg.168;
NAD and NADP cofactor biosynthesis global;
Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229933.peg.871 CDS AJMF02000016.1 142224 141544 -3 - 681 FIG009095: D,D-carboxypeptidase family protein CBSS-584.1.peg.1352
fig|6666666.229933.peg.872 CDS AJMF02000016.1 143359 142226 -1 - 1134 N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18) A Glutathione-dependent Thiol Reductase Associated with a Step in Lysine Biosynthesis;
CBSS-584.1.peg.1352;
Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229933.peg.873 CDS AJMF02000016.1 143840 143496 -2 - 345 FIG138056: a glutathione-dependent thiol reductase A Glutathione-dependent Thiol Reductase Associated with a Step in Lysine Biosynthesis;
CBSS-584.1.peg.1352
fig|6666666.229933.peg.874 CDS AJMF02000016.1 145786 143906 -1 - 1881 Chaperone protein HtpG Protein chaperones
fig|6666666.229933.peg.875 CDS AJMF02000016.1 147080 145920 -2 - 1161 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) Chorismate Synthesis;
Chorismate Synthesis;
Phenylalanine and Tyrosine Branches from Chorismate;
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229933.peg.876 CDS AJMF02000016.1 148195 147278 -1 - 918 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC 3.5.1.108) KDO2-Lipid A biosynthesis
fig|6666666.229933.peg.877 CDS AJMF02000016.1 149516 148233 -2 - 1284 Cell division protein FtsZ (EC 3.4.24.-) Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ;
cell division core of larger cluster
fig|6666666.229933.peg.878 CDS AJMF02000016.1 150844 149600 -1 - 1245 Cell division protein FtsA Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ;
cell division core of larger cluster
fig|6666666.229933.peg.879 CDS AJMF02000016.1 151672 150905 -1 - 768 Cell division protein FtsQ Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ;
cell division core of larger cluster
fig|6666666.229933.peg.880 CDS AJMF02000016.1 152598 151669 -3 - 930 D-alanine--D-alanine ligase (EC 6.3.2.4) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo;
cell division cluster containing FtsQ
fig|6666666.229933.peg.881 CDS AJMF02000016.1 154041 152611 -3 - 1431 UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo;
cell division cluster containing FtsQ
fig|6666666.229933.peg.882 CDS AJMF02000016.1 155176 154112 -1 - 1065 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) Peptidoglycan Biosynthesis;
cell division core of larger cluster
fig|6666666.229933.peg.883 CDS AJMF02000016.1 156407 155217 -2 - 1191 Cell division protein FtsW Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ
fig|6666666.229933.peg.884 CDS AJMF02000016.1 157726 156422 -1 - 1305 UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC 6.3.2.9) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo
fig|6666666.229933.peg.885 CDS AJMF02000016.1 158838 157753 -3 - 1086 Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC 2.7.8.13) Peptidoglycan Biosynthesis
fig|6666666.229933.peg.886 CDS AJMF02000016.1 160211 158832 -2 - 1380 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase (EC 6.3.2.10) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo
fig|6666666.229933.peg.887 CDS AJMF02000016.1 161684 160218 -2 - 1467 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo
fig|6666666.229933.peg.888 CDS AJMF02000016.1 163525 161702 -1 - 1824 Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129) 16S rRNA modification within P site of ribosome;
Bacterial Cell Division;
Bacterial Cytoskeleton;
CBSS-83331.1.peg.3039;
Peptidoglycan Biosynthesis
fig|6666666.229933.peg.889 CDS AJMF02000016.1 163860 163543 -3 - 318 Cell division protein FtsL 16S rRNA modification within P site of ribosome;
Bacterial Cell Division;
Bacterial Cytoskeleton;
Stationary phase repair cluster
fig|6666666.229933.peg.890 CDS AJMF02000016.1 164828 163860 -2 - 969 rRNA small subunit methyltransferase H 16S rRNA modification within P site of ribosome;
Bacterial Cell Division
fig|6666666.229933.peg.891 CDS AJMF02000016.1 165396 164938 -3 - 459 Cell division protein MraZ 16S rRNA modification within P site of ribosome;
Bacterial Cell Division;
Bacterial Cytoskeleton
fig|6666666.229933.peg.892 CDS AJMF02000016.1 167258 165660 -2 - 1599 Carbon starvation protein A Carbon Starvation
fig|6666666.229933.peg.893 CDS AJMF02000016.1 167441 167563 2 + 123 hypothetical protein - none -
fig|6666666.229933.peg.894 CDS AJMF02000016.1 168484 167798 -1 - 687 Arginine ABC transporter, permease protein ArtM Arginine and Ornithine Degradation
fig|6666666.229933.peg.895 CDS AJMF02000016.1 169146 168484 -3 - 663 Arginine ABC transporter, permease protein ArtQ Arginine and Ornithine Degradation
fig|6666666.229933.peg.896 CDS AJMF02000016.1 169870 169151 -1 - 720 Arginine ABC transporter, periplasmic arginine-binding protein ArtI Arginine and Ornithine Degradation
fig|6666666.229933.peg.897 CDS AJMF02000016.1 170625 169891 -3 - 735 Arginine ABC transporter, ATP-binding protein ArtP Arginine and Ornithine Degradation
fig|6666666.229933.peg.898 CDS AJMF02000016.1 171350 170766 -2 - 585 Phosphoheptose isomerase 1 (EC 5.3.1.-) Capsular heptose biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.229933.peg.899 CDS AJMF02000016.1 174910 171452 -1 - 3459 Transcription-repair coupling factor Cell division-ribosomal stress proteins cluster;
Transcription factors bacterial;
Transcription repair cluster
fig|6666666.229933.peg.900 CDS AJMF02000016.1 175537 175364 -1 - 174 hypothetical protein - none -
fig|6666666.229933.peg.901 CDS AJMF02000016.1 177501 175579 -3 - 1923 Predicted P-loop ATPase fused to an acetyltransferase COG1444 tRNA modification Archaea;
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229933.peg.902 CDS AJMF02000016.1 178206 177505 -3 - 702 unknown - none -
fig|6666666.229933.peg.903 CDS AJMF02000016.1 178832 178368 -2 - 465 Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly CBSS-56780.10.peg.1536;
Glycyl-tRNA synthetase containing cluster;
tRNA-methylthiotransferase containing cluster
fig|6666666.229933.peg.904 CDS AJMF02000016.1 179068 178820 -1 - 249 Phosphate starvation-inducible protein PhoH, predicted ATPase CBSS-56780.10.peg.1536;
CBSS-56780.10.peg.1536;
Glycyl-tRNA synthetase containing cluster;
Phosphate metabolism;
Phosphate metabolism;
tRNA-methylthiotransferase containing cluster;
tRNA-methylthiotransferase containing cluster
fig|6666666.229933.peg.905 CDS AJMF02000016.1 179582 179812 2 + 231 Flp pilus assembly protein, pilin Flp Widespread colonization island
fig|6666666.229933.peg.906 CDS AJMF02000016.1 180405 180581 3 + 177 Type IV prepilin peptidase TadV/CpaA Widespread colonization island
fig|6666666.229933.peg.907 CDS AJMF02000016.1 180633 181457 3 + 825 Flp pilus assembly protein RcpC/CpaB Widespread colonization island
fig|6666666.229933.peg.908 CDS AJMF02000016.1 181459 182841 1 + 1383 Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly Widespread colonization island
fig|6666666.229933.peg.909 CDS AJMF02000016.1 182871 183341 3 + 471 Flp pilus assembly protein RcpB Widespread colonization island
fig|6666666.229933.peg.910 CDS AJMF02000016.1 183357 184481 3 + 1125 Type II/IV secretion system ATPase TadZ/CpaE, associated with Flp pilus assembly Widespread colonization island
fig|6666666.229933.peg.911 CDS AJMF02000016.1 184495 185775 1 + 1281 Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily Widespread colonization island
fig|6666666.229933.peg.912 CDS AJMF02000016.1 185775 186662 3 + 888 Flp pilus assembly protein TadB Widespread colonization island
fig|6666666.229933.peg.913 CDS AJMF02000016.1 186659 187525 2 + 867 Type II/IV secretion system protein TadC, associated with Flp pilus assembly Widespread colonization island
fig|6666666.229933.peg.914 CDS AJMF02000016.1 187515 188276 3 + 762 Flp pilus assembly protein TadD, contains TPR repeat Widespread colonization island
fig|6666666.229933.peg.915 CDS AJMF02000016.1 188931 189509 3 + 579 Flp pilus assembly surface protein TadF, ATP/GTP-binding motif Widespread colonization island
fig|6666666.229933.peg.916 CDS AJMF02000016.1 189526 191097 1 + 1572 Protein TadG, associated with Flp pilus assembly Widespread colonization island
fig|6666666.229933.peg.917 CDS AJMF02000016.1 192309 192073 -3 - 237 Mobile element protein - none -
fig|6666666.229933.peg.918 CDS AJMF02000016.1 192469 192353 -1 - 117 hypothetical protein - none -
fig|6666666.229933.peg.919 CDS AJMF02000016.1 194795 193293 -2 - 1503 Sodium-dependent transporter - none -
fig|6666666.229933.peg.920 CDS AJMF02000016.1 195210 195485 3 + 276 tRNA pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses;
tRNA modification Archaea;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229933.peg.921 CDS AJMF02000016.1 195626 195937 2 + 312 Membrane protein, MgtC/SapB family - none -
fig|6666666.229933.peg.922 CDS AJMF02000016.1 196878 195976 -3 - 903 hypothetical protein - none -
fig|6666666.229933.peg.923 CDS AJMF02000016.1 198783 196924 -3 - 1860 Selenocysteine-specific translation elongation factor Selenocysteine metabolism
fig|6666666.229933.peg.924 CDS AJMF02000016.1 200174 198780 -2 - 1395 L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1) Selenocysteine metabolism
fig|6666666.229933.peg.925 CDS AJMF02000016.1 200318 202033 2 + 1716 Prolyl-tRNA synthetase (EC 6.1.1.15), bacterial type tRNA aminoacylation, Pro
fig|6666666.229933.peg.926 CDS AJMF02000016.1 202118 202306 2 + 189 Ethidium bromide-methyl viologen resistance protein EmrE - none -
fig|6666666.229933.peg.927 CDS AJMF02000016.1 202346 202600 2 + 255 YgfY COG2938 - none -
fig|6666666.229933.peg.928 CDS AJMF02000016.1 202733 203308 2 + 576 RNA polymerase sigma factor RpoE Transcription initiation, bacterial sigma factors
fig|6666666.229933.peg.929 CDS AJMF02000016.1 203347 203931 1 + 585 Sigma factor RpoE negative regulatory protein RseA Periplasmic Stress Response;
Transcription initiation, bacterial sigma factors
fig|6666666.229933.peg.930 CDS AJMF02000016.1 204014 204970 2 + 957 Sigma factor RpoE negative regulatory protein RseB precursor Periplasmic Stress Response;
Transcription initiation, bacterial sigma factors
fig|6666666.229933.peg.931 CDS AJMF02000016.1 204980 205417 2 + 438 Sigma factor RpoE regulatory protein RseC Transcription initiation, bacterial sigma factors
fig|6666666.229933.peg.932 CDS AJMF02000016.1 205498 206010 1 + 513 Molybdopterin-guanine dinucleotide biosynthesis protein MobB Molybdenum cofactor biosynthesis;
ar-431-EC Molybdopterin-guanine dinucleotide biosynthesis
fig|6666666.229933.peg.933 CDS AJMF02000016.1 206104 206859 1 + 756 Short chain dehydrogenase - none -
fig|6666666.229933.peg.934 CDS AJMF02000016.1 208399 206939 -1 - 1461 Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3) Dipeptidases (EC 3.4.13.-);
Recycling of Peptidoglycan Amino Acids
fig|6666666.229933.peg.935 CDS AJMF02000016.1 208514 208978 2 + 465 Xanthine-guanine phosphoribosyltransferase (EC 2.4.2.22) Purine conversions
fig|6666666.229933.peg.936 CDS AJMF02000016.1 211411 209069 -1 - 2343 Outer membrane protein Imp, required for envelope biogenesis / Organic solvent tolerance protein precursor Lipopolysaccharide assembly
fig|6666666.229933.peg.937 CDS AJMF02000016.1 212037 211477 -3 - 561 DNA-3-methyladenine glycosylase (EC 3.2.2.20) CBSS-326442.4.peg.1852;
DNA Repair Base Excision
fig|6666666.229933.peg.938 CDS AJMF02000016.1 212236 212841 1 + 606 probable integral membrane protein Cj0014c - none -
fig|6666666.229933.peg.939 CDS AJMF02000016.1 214144 212894 -1 - 1251 Diaminopimelate decarboxylase (EC 4.1.1.20) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229933.peg.940 CDS AJMF02000016.1 214281 214162 -3 - 120 hypothetical protein - none -
fig|6666666.229933.peg.941 CDS AJMF02000016.1 214404 214718 3 + 315 Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly Biogenesis of cytochrome c oxidases
fig|6666666.229933.peg.942 CDS AJMF02000016.1 214715 216604 2 + 1890 ATP-dependent DNA helicase RecQ DNA repair, bacterial RecFOR pathway
fig|6666666.229933.peg.943 CDS AJMF02000016.1 216701 219121 2 + 2421 DNA gyrase subunit B (EC 5.99.1.3) Cell Division Subsystem including YidCD;
DNA gyrase subunits;
DNA replication cluster 1;
DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.229933.peg.944 CDS AJMF02000016.1 220090 219176 -1 - 915 Pantothenate kinase (EC 2.7.1.33) Coenzyme A Biosynthesis
fig|6666666.229933.peg.945 CDS AJMF02000017.1 1405 38 -1 - 1368 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229933.peg.946 CDS AJMF02000017.1 1591 2667 1 + 1077 hypothetical tRNA/rRNA methyltransferase yfiF [EC:2.1.1.-] RNA methylation;
tRNA modification Bacteria
fig|6666666.229933.peg.947 CDS AJMF02000017.1 2954 2733 -2 - 222 4Fe-4S ferredoxin, iron-sulfur binding - none -
fig|6666666.229933.peg.948 CDS AJMF02000017.1 3061 3756 1 + 696 Probable ribonuclease HI0526 precursor - none -
fig|6666666.229933.peg.949 CDS AJMF02000017.1 3869 5032 2 + 1164 Phosphoglycerate kinase (EC 2.7.2.3) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis
fig|6666666.229933.peg.950 CDS AJMF02000017.1 5097 6176 3 + 1080 Fructose-bisphosphate aldolase class II (EC 4.1.2.13) Glycolysis and Gluconeogenesis
fig|6666666.229933.peg.951 CDS AJMF02000017.1 6350 6189 -2 - 162 hypothetical protein - none -
fig|6666666.229933.peg.952 CDS AJMF02000017.1 6384 7526 3 + 1143 O-antigen ligase LOS core oligosaccharide biosynthesis
fig|6666666.229933.peg.953 CDS AJMF02000017.1 7519 8442 1 + 924 Lysophospholipase L2 (EC 3.1.1.5) Triacylglycerol metabolism
fig|6666666.229933.peg.954 CDS AJMF02000017.1 9298 8480 -1 - 819 Cof protein, HD superfamily hydrolase Housecleaning nucleoside triphosphate pyrophosphatases
fig|6666666.229933.peg.955 CDS AJMF02000017.1 9585 10469 3 + 885 Acetolactate synthase large subunit (EC 2.2.1.6) - none -
fig|6666666.229933.peg.956 CDS AJMF02000017.1 10543 10950 1 + 408 Threonine dehydratase biosynthetic (EC 4.3.1.19) - none -
fig|6666666.229933.peg.957 CDS AJMF02000017.1 11001 11417 3 + 417 Threonine dehydratase biosynthetic (EC 4.3.1.19) - none -
fig|6666666.229933.peg.958 CDS AJMF02000017.1 12486 11551 -3 - 936 Cell division protein FtsX Bacterial Cell Division
fig|6666666.229933.peg.959 CDS AJMF02000017.1 13145 12495 -2 - 651 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) Bacterial Cell Division
fig|6666666.229933.peg.960 CDS AJMF02000017.1 14099 13425 -2 - 675 Phosphoglycolate phosphatase (EC 3.1.3.18) 2-phosphoglycolate salvage;
Glycolate, glyoxylate interconversions
fig|6666666.229933.peg.961 CDS AJMF02000017.1 14776 14102 -1 - 675 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) Conserved gene cluster associated with Met-tRNA formyltransferase;
Pentose phosphate pathway;
Riboflavin synthesis cluster
fig|6666666.229933.peg.962 CDS AJMF02000017.1 14928 15206 3 + 279 Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage Bacterial Cell Division;
Bacterial Cytoskeleton;
Cell division-ribosomal stress proteins cluster;
Stationary phase repair cluster
fig|6666666.229933.peg.963 CDS AJMF02000017.1 15206 15901 2 + 696 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC 2.7.7.60) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis;
Stationary phase repair cluster
fig|6666666.229933.peg.964 CDS AJMF02000017.1 15898 16377 1 + 480 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis;
Stationary phase repair cluster
fig|6666666.229933.peg.965 CDS AJMF02000017.1 16374 17384 3 + 1011 tRNA pseudouridine 13 synthase (EC 4.2.1.-) Stationary phase repair cluster;
tRNA modification Archaea;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229933.peg.966 CDS AJMF02000017.1 17417 18157 2 + 741 5-nucleotidase SurE (EC 3.1.3.5) @ Exopolyphosphatase (EC 3.6.1.11) Housecleaning nucleoside triphosphate pyrophosphatases;
Phosphate metabolism;
Polyphosphate;
Stationary phase repair cluster
fig|6666666.229933.peg.967 CDS AJMF02000017.1 18185 18760 2 + 576 FIG139438: lipoprotein B Stationary phase repair cluster
fig|6666666.229933.peg.968 CDS AJMF02000017.1 18775 18966 1 + 192 Cobalamin biosynthesis protein CobN and related Mg-chelatases - none -
fig|6666666.229933.peg.969 CDS AJMF02000017.1 18983 20152 2 + 1170 Lipoprotein NlpD Stationary phase repair cluster
fig|6666666.229933.peg.970 CDS AJMF02000017.1 20576 20397 -2 - 180 hypothetical protein - none -
fig|6666666.229933.peg.971 CDS AJMF02000017.1 21610 20849 -1 - 762 Lipopolysaccharide biosynthesis glycosyltransferase - none -
fig|6666666.229933.peg.972 CDS AJMF02000017.1 21709 22992 1 + 1284 3-deoxy-D-manno-octulosonic-acid transferase (EC 2.-.-.-) KDO2-Lipid A biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.229933.peg.973 CDS AJMF02000017.1 22993 23478 1 + 486 Phosphopantetheine adenylyltransferase (EC 2.7.7.3) CBSS-266117.6.peg.1260;
CBSS-269801.1.peg.1715;
Coenzyme A Biosynthesis
fig|6666666.229933.peg.974 CDS AJMF02000017.1 24265 23540 -1 - 726 3-deoxy-D-manno-octulosonic acid kinase (EC 2.7.1.-) - none -
fig|6666666.229933.peg.975 CDS AJMF02000017.1 24354 25397 3 + 1044 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) LOS core oligosaccharide biosynthesis
fig|6666666.229933.peg.976 CDS AJMF02000017.1 25835 25494 -2 - 342 Possible carboxymuconolactone decarboxylase family protein (EC 4.1.1.44) - none -
fig|6666666.229933.peg.977 CDS AJMF02000017.1 25939 26856 1 + 918 transcriptional regulator MtrA - none -
fig|6666666.229933.peg.978 CDS AJMF02000017.1 26944 28788 1 + 1845 Lipid A export ATP-binding/permease protein MsbA - none -
fig|6666666.229933.peg.979 CDS AJMF02000017.1 31267 28829 -1 - 2439 Glycerol-3-phosphate acyltransferase (EC 2.3.1.15) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229933.peg.980 CDS AJMF02000017.1 31475 32098 2 + 624 SOS-response repressor and protease LexA (EC 3.4.21.88) DNA repair, bacterial
fig|6666666.229933.peg.981 CDS AJMF02000017.1 32198 32073 -2 - 126 hypothetical protein - none -
fig|6666666.229933.peg.982 CDS AJMF02000017.1 32250 32627 3 + 378 SSU ribosomal protein S6p Primosomal replication protein N clusters with ribosomal proteins;
Ribosome SSU bacterial
fig|6666666.229933.peg.983 CDS AJMF02000017.1 32614 32940 1 + 327 Primosomal replication protein N Primosomal replication protein N clusters with ribosomal proteins
fig|6666666.229933.peg.984 CDS AJMF02000017.1 32953 33183 1 + 231 SSU ribosomal protein S18p @ SSU ribosomal protein S18p, zinc-independent Primosomal replication protein N clusters with ribosomal proteins;
Ribosome SSU bacterial;
Ribosome SSU bacterial
fig|6666666.229933.peg.985 CDS AJMF02000017.1 33199 33648 1 + 450 LSU ribosomal protein L9p Primosomal replication protein N clusters with ribosomal proteins;
Ribosome LSU bacterial
fig|6666666.229933.peg.986 CDS AJMF02000017.1 33868 34986 1 + 1119 Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake CBSS-272943.3.peg.1367;
Conserved gene cluster associated with Met-tRNA formyltransferase;
YrdC-YciO-Sua5 protein family
fig|6666666.229933.peg.987 CDS AJMF02000017.1 36125 35043 -2 - 1083 Glycerophosphoryl diester phosphodiesterase, periplasmic (EC 3.1.4.46) - none -
fig|6666666.229933.peg.988 CDS AJMF02000017.1 37801 36359 -1 - 1443 Glycerol-3-phosphate transporter - none -
fig|6666666.229933.peg.989 CDS AJMF02000017.1 38871 38134 -3 - 738 23S rRNA (guanosine-2@1-O-) -methyltransferase rlmB (EC 2.1.1.-) RNA methylation
fig|6666666.229933.peg.990 CDS AJMF02000017.1 41273 38868 -2 - 2406 3@1-to-5@1 exoribonuclease RNase R RNA processing and degradation, bacterial
fig|6666666.229933.peg.991 CDS AJMF02000017.1 41523 42578 3 + 1056 Rod shape-determining protein MreB Bacterial Cell Division;
Bacterial Cytoskeleton
fig|6666666.229933.peg.992 CDS AJMF02000017.1 42648 43721 3 + 1074 Rod shape-determining protein MreC Bacterial Cell Division;
Bacterial Cytoskeleton;
CBSS-354.1.peg.2917
fig|6666666.229933.peg.993 CDS AJMF02000017.1 43721 44209 2 + 489 Rod shape-determining protein MreD Bacterial Cell Division;
Bacterial Cytoskeleton;
CBSS-354.1.peg.2917
fig|6666666.229933.peg.994 CDS AJMF02000017.1 44669 44319 -2 - 351 LSU ribosomal protein L19p Ribosome LSU bacterial
fig|6666666.229933.peg.995 CDS AJMF02000017.1 45444 44695 -3 - 750 tRNA (Guanine37-N1) -methyltransferase (EC 2.1.1.31) RNA methylation;
Ribosome biogenesis bacterial;
tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229933.peg.996 CDS AJMF02000017.1 46037 45510 -2 - 528 16S rRNA processing protein RimM Ribosome biogenesis bacterial
fig|6666666.229933.peg.997 CDS AJMF02000017.1 46311 46063 -3 - 249 SSU ribosomal protein S16p Ribosome SSU bacterial
fig|6666666.229933.peg.998 CDS AJMF02000017.1 46497 46652 3 + 156 hypothetical protein - none -
fig|6666666.229933.peg.999 CDS AJMF02000017.1 48107 46806 -2 - 1302 Xaa-Pro aminopeptidase (EC 3.4.11.9) Aminopeptidases (EC 3.4.11.-);
CBSS-87626.3.peg.3639
fig|6666666.229933.peg.1000 CDS AJMF02000017.1 48670 48122 -1 - 549 FIG001590: Putative conserved exported protein precursor CBSS-87626.3.peg.3639
fig|6666666.229933.peg.1001 CDS AJMF02000017.1 48829 49155 1 + 327 Z-ring-associated protein ZapA Bacterial Cytoskeleton
fig|6666666.229933.peg.1002 CDS AJMF02000017.1 49449 50024 3 + 576 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) 5-FCL-like protein;
Folate Biosynthesis;
One-carbon metabolism by tetrahydropterines
fig|6666666.229933.peg.1003 CDS AJMF02000017.1 50848 50060 -1 - 789 Probable component of the lipoprotein assembly complex (forms a complex with YaeT, YfgL, and NlpB) Lipopolysaccharide assembly
fig|6666666.229933.peg.1004 CDS AJMF02000017.1 50955 51929 3 + 975 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) RNA pseudouridine syntheses;
Ribosome biogenesis bacterial
fig|6666666.229933.peg.1005 CDS AJMF02000017.1 51931 52668 1 + 738 COG1496: Uncharacterized conserved protein - none -
fig|6666666.229933.peg.1006 CDS AJMF02000017.1 53236 52838 -1 - 399 Phosphoglycerol transferase I (EC 2.7.8.20) Synthesis of osmoregulated periplasmic glucans
fig|6666666.229933.peg.1007 CDS AJMF02000017.1 54773 53190 -2 - 1584 Phosphoglycerol transferase I (EC 2.7.8.20) Synthesis of osmoregulated periplasmic glucans
fig|6666666.229933.peg.1008 CDS AJMF02000017.1 55497 54838 -3 - 660 Oxygen-insensitive NAD(P)H nitroreductase (EC 1.-.-.-) / Dihydropteridine reductase (EC 1.5.1.34) - none -
fig|6666666.229933.peg.1009 CDS AJMF02000017.1 56471 55911 -2 - 561 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) CBSS-630.2.peg.3360
fig|6666666.229933.peg.1010 CDS AJMF02000017.1 57434 56487 -2 - 948 Magnesium and cobalt transport protein CorA Magnesium transport
fig|6666666.229933.peg.1011 CDS AJMF02000017.1 58887 58087 -3 - 801 Orf2 - none -
fig|6666666.229933.peg.1012 CDS AJMF02000017.1 62139 59041 -3 - 3099 RND multidrug efflux transporter; Acriflavin resistance protein Multidrug Resistance Efflux Pumps
fig|6666666.229933.peg.1013 CDS AJMF02000017.1 63349 62153 -1 - 1197 Probable Co/Zn/Cd efflux system membrane fusion protein Cobalt-zinc-cadmium resistance
fig|6666666.229933.peg.1014 CDS AJMF02000017.1 63941 63375 -2 - 567 Probable Co/Zn/Cd efflux system membrane fusion protein Cobalt-zinc-cadmium resistance
fig|6666666.229933.peg.1015 CDS AJMF02000017.1 64953 64141 -3 - 813 Cell division protein - none -
fig|6666666.229933.peg.1016 CDS AJMF02000017.1 67261 65063 -1 - 2199 Helicase PriA essential for oriC/DnaA-independent DNA replication Conserved gene cluster associated with Met-tRNA formyltransferase
fig|6666666.229933.peg.1017 CDS AJMF02000017.1 67489 68352 1 + 864 Involved in lipopolysaccharide biosynthesis - none -
fig|6666666.229933.peg.1018 CDS AJMF02000017.1 69363 68359 -3 - 1005 putative capsular polysaccharide synthesis protein - none -
fig|6666666.229933.peg.1019 CDS AJMF02000017.1 70220 69372 -2 - 849 Lipooligosaccharide biosynthesis protein lex-1 (EC 2.-.-.-) - none -
fig|6666666.229933.peg.1020 CDS AJMF02000017.1 70478 70690 2 + 213 LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-dependent Ribosome LSU bacterial;
Ribosome LSU bacterial
fig|6666666.229933.peg.1021 CDS AJMF02000017.1 70753 71445 1 + 693 Beta-1,4-galactosyltransferase LOS core oligosaccharide biosynthesis
fig|6666666.229933.peg.1022 CDS AJMF02000017.1 71446 72468 1 + 1023 COG0859: ADP-heptose:LPS heptosyltransferase - none -
fig|6666666.229933.peg.1023 CDS AJMF02000017.1 72478 73530 1 + 1053 COG0859: ADP-heptose:LPS heptosyltransferase - none -
fig|6666666.229933.peg.1024 CDS AJMF02000017.1 74390 73533 -2 - 858 Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) DNA Repair Base Excision
fig|6666666.229933.peg.1025 CDS AJMF02000017.1 74600 74430 -2 - 171 LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-independent Ribosome LSU bacterial;
Ribosome LSU bacterial
fig|6666666.229933.peg.1026 CDS AJMF02000017.1 74785 74612 -1 - 174 LSU ribosomal protein L28p Ribosome LSU bacterial
fig|6666666.229933.peg.1027 CDS AJMF02000017.1 75716 75057 -2 - 660 DNA repair protein RadC DNA repair, bacterial
fig|6666666.229933.peg.1028 CDS AJMF02000017.1 75919 75767 -1 - 153 hypothetical protein - none -
fig|6666666.229933.peg.1029 CDS AJMF02000017.1 75894 77093 3 + 1200 Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) / Phosphopantothenoylcysteine synthetase (EC 6.3.2.5) Coenzyme A Biosynthesis;
Coenzyme A Biosynthesis
fig|6666666.229933.peg.1030 CDS AJMF02000017.1 77162 77617 2 + 456 Deoxyuridine 5@1-triphosphate nucleotidohydrolase (EC 3.6.1.23) Housecleaning nucleoside triphosphate pyrophosphatases;
Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229933.peg.1031 CDS AJMF02000017.1 77617 78216 1 + 600 Transcriptional regulator SlmA, TetR family - none -
fig|6666666.229933.peg.1032 CDS AJMF02000017.1 78240 78383 3 + 144 FIG00696234: hypothetical protein - none -
fig|6666666.229933.peg.1033 CDS AJMF02000017.1 78496 79140 1 + 645 Cyclic AMP receptor protein cAMP signaling in bacteria
fig|6666666.229933.peg.1034 CDS AJMF02000017.1 80643 79273 -3 - 1371 Glutathione reductase (EC 1.8.1.7) Glutathione: Redox cycle
fig|6666666.229933.peg.1035 CDS AJMF02000017.1 81583 80738 -1 - 846 Protein involved in catabolism of external DNA DNA processing cluster;
DNA uptake cluster
fig|6666666.229933.peg.1036 CDS AJMF02000017.1 84245 81678 -2 - 2568 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) DNA uptake cluster;
Peptidoglycan Biosynthesis;
Type IV pilus
fig|6666666.229933.peg.1037 CDS AJMF02000017.1 84379 85188 1 + 810 Type IV pilus biogenesis protein PilM; Competence protein A DNA uptake cluster;
Type IV pilus
fig|6666666.229933.peg.1038 CDS AJMF02000017.1 85199 85717 2 + 519 Type IV pilus biogenesis protein PilN; Competence protein B DNA uptake cluster;
Type IV pilus
fig|6666666.229933.peg.1039 CDS AJMF02000017.1 85714 86238 1 + 525 Competence protein C; Chromosome segregation ATPases DNA uptake cluster
fig|6666666.229933.peg.1040 CDS AJMF02000017.1 86238 86630 3 + 393 Type IV pilus biogenesis protein PilQ; Competence protein D DNA uptake cluster;
Type IV pilus
fig|6666666.229933.peg.1041 CDS AJMF02000017.1 86650 88059 1 + 1410 Type IV pilus biogenesis protein PilQ; Competence protein E DNA uptake cluster;
Type IV pilus
fig|6666666.229933.peg.1042 CDS AJMF02000017.1 88273 88800 1 + 528 Shikimate kinase I (EC 2.7.1.71) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229933.peg.1043 CDS AJMF02000017.1 88824 89912 3 + 1089 3-dehydroquinate synthase (EC 4.2.3.4) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate);
Type IV pilus
fig|6666666.229933.peg.1044 CDS AJMF02000017.1 89915 90769 2 + 855 Methyl-directed repair DNA adenine methylase (EC 2.1.1.72) DNA repair, bacterial
fig|6666666.229933.peg.1045 CDS AJMF02000017.1 91354 90875 -1 - 480 Single-stranded DNA-binding protein DNA repair, bacterial;
DNA repair, bacterial RecFOR pathway
fig|6666666.229933.peg.1046 CDS AJMF02000017.1 91524 94355 3 + 2832 Excinuclease ABC subunit A DNA repair, UvrABC system
fig|6666666.229933.peg.1047 CDS AJMF02000018.1 1431 478 -3 - 954 Glycosyltransferase - none -
fig|6666666.229933.peg.1048 CDS AJMF02000018.1 2465 1575 -2 - 891 hypothetical protein - none -
fig|6666666.229933.peg.1049 CDS AJMF02000018.1 4513 2468 -1 - 2046 DNA polymerase III subunits gamma and tau (EC 2.7.7.7) DNA processing cluster
fig|6666666.229933.peg.1050 CDS AJMF02000018.1 5157 4546 -3 - 612 Adenine phosphoribosyltransferase (EC 2.4.2.7) Purine conversions;
cAMP signaling in bacteria
fig|6666666.229933.peg.1051 CDS AJMF02000018.1 6135 5179 -3 - 957 Lipid A biosynthesis (KDO) 2-(lauroyl)-lipid IVA acyltransferase (EC 2.3.1.-) KDO2-Lipid A biosynthesis
fig|6666666.229933.peg.1052 CDS AJMF02000018.1 7018 6251 -1 - 768 Putative membrane protein YfcA - none -
fig|6666666.229933.peg.1053 CDS AJMF02000018.1 7894 7022 -1 - 873 Murein endopeptidase - none -
fig|6666666.229933.peg.1054 CDS AJMF02000018.1 8989 7916 -1 - 1074 Chorismate synthase (EC 4.2.3.5) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229933.peg.1055 CDS AJMF02000018.1 12334 9011 -1 - 3324 Potassium efflux system KefA protein / Small-conductance mechanosensitive channel Potassium homeostasis
fig|6666666.229933.peg.1056 CDS AJMF02000018.1 13758 12343 -3 - 1416 O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229933.peg.1057 CDS AJMF02000018.1 14381 13764 -2 - 618 SeqA protein, negative modulator of initiation of replication - none -
fig|6666666.229933.peg.1058 CDS AJMF02000018.1 14468 15268 2 + 801 Esterase ybfF (EC 3.1.-.-) - none -
fig|6666666.229933.peg.1059 CDS AJMF02000018.1 15688 16212 1 + 525 Flavodoxin 1 Flavodoxin
fig|6666666.229933.peg.1060 CDS AJMF02000018.1 16231 16671 1 + 441 Ferric uptake regulation protein FUR Bacterial RNA-metabolizing Zn-dependent hydrolases;
Oxidative stress
fig|6666666.229933.peg.1061 CDS AJMF02000018.1 16839 19502 3 + 2664 DNA gyrase subunit A (EC 5.99.1.3) Cell Division Subsystem including YidCD;
DNA gyrase subunits;
DNA replication cluster 1;
DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.229933.peg.1062 CDS AJMF02000018.1 19570 19920 1 + 351 FIG00782386: hypothetical protein - none -
fig|6666666.229933.peg.1063 CDS AJMF02000018.1 20256 19954 -3 - 303 Translation initiation factor SUI1-related protein Translation initiation factors bacterial
fig|6666666.229933.peg.1064 CDS AJMF02000018.1 20969 20277 -2 - 693 Orotidine 5@1-phosphate decarboxylase (EC 4.1.1.23) De Novo Pyrimidine Synthesis;
Riboflavin synthesis cluster
fig|6666666.229933.peg.1065 CDS AJMF02000018.1 22189 20999 -1 - 1191 Heat shock (predicted periplasmic) protein YciM, precursor Osmotic stress cluster
fig|6666666.229933.peg.1066 CDS AJMF02000018.1 22485 22189 -3 - 297 Inner membrane protein yciS - none -
fig|6666666.229933.peg.1067 CDS AJMF02000018.1 22871 22584 -2 - 288 Integration host factor beta subunit DNA structural proteins, bacterial
fig|6666666.229933.peg.1068 CDS AJMF02000018.1 24579 22933 -3 - 1647 SSU ribosomal protein S1p Cell division-ribosomal stress proteins cluster;
Ribosome SSU bacterial
fig|6666666.229933.peg.1069 CDS AJMF02000018.1 25354 24677 -1 - 678 Cytidylate kinase (EC 2.7.4.25) pyrimidine conversions
fig|6666666.229933.peg.1070 CDS AJMF02000018.1 26240 25347 -2 - 894 Membrane protein LAPB - none -
fig|6666666.229933.peg.1071 CDS AJMF02000018.1 26533 28899 1 + 2367 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229933.peg.1072 CDS AJMF02000018.1 28977 31751 3 + 2775 Probable zinc protease pqqL (EC 3.4.99.-) - none -
fig|6666666.229933.peg.1073 CDS AJMF02000018.1 32150 31818 -2 - 333 Branched-chain amino acid transport protein azlD - none -
fig|6666666.229933.peg.1074 CDS AJMF02000018.1 32807 32151 -2 - 657 Branched-chain amino acid transport protein AzlC - none -
fig|6666666.229933.peg.1075 CDS AJMF02000018.1 33816 32884 -3 - 933 Transcriptional activator MetR LysR-family proteins in Escherichia coli;
LysR-family proteins in Salmonella enterica Typhimurium;
Methionine Biosynthesis
fig|6666666.229933.peg.1076 CDS AJMF02000018.1 34116 36389 3 + 2274 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) Methionine Biosynthesis
fig|6666666.229933.peg.1077 CDS AJMF02000018.1 38745 36820 -3 - 1926 Type III restriction-modification enzyme helicase subunit - none -
fig|6666666.229933.peg.1078 CDS AJMF02000018.1 39196 38732 -1 - 465 FIG074102: hypothetical protein - none -
fig|6666666.229933.peg.1079 CDS AJMF02000018.1 39642 39196 -3 - 447 Type III restriction-modification system methylation subunit (EC 2.1.1.72) Restriction-Modification System
fig|6666666.229933.peg.1080 CDS AJMF02000018.1 39918 39739 -3 - 180 CRISPR-associated helicase Cas3 CRISPRs
fig|6666666.229933.peg.1081 CDS AJMF02000018.1 40472 41134 2 + 663 Putative TEGT family carrier/transport protein CBSS-326442.4.peg.1852
fig|6666666.229933.peg.1082 CDS AJMF02000018.1 41220 41549 3 + 330 tRNA 2-thiouridine synthesizing protein E (EC 2.8.1.-) CBSS-326442.4.peg.1852;
Lipoic acid synthesis cluster;
Sulfite reduction-associated complex DsrMKJOP and co-clustering genes
fig|6666666.229933.peg.1083 CDS AJMF02000018.1 41647 42528 1 + 882 Manganese ABC transporter, periplasmic-binding protein SitA - none -
fig|6666666.229933.peg.1084 CDS AJMF02000018.1 42528 43418 3 + 891 Manganese ABC transporter, ATP-binding protein SitB - none -
fig|6666666.229933.peg.1085 CDS AJMF02000018.1 43418 44275 2 + 858 Manganese ABC transporter, inner membrane permease protein SitC - none -
fig|6666666.229933.peg.1086 CDS AJMF02000018.1 44272 45120 1 + 849 Manganese ABC transporter, inner membrane permease protein SitD - none -
fig|6666666.229933.peg.1087 CDS AJMF02000018.1 45367 45095 -1 - 273 Acylphosphate phosphohydrolase (EC 3.6.1.7), putative Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229933.peg.1088 CDS AJMF02000018.1 45512 46186 2 + 675 UPF0319 protein YccT precursor CBSS-83333.1.peg.946
fig|6666666.229933.peg.1089 CDS AJMF02000018.1 46249 46707 1 + 459 Methylglyoxal synthase (EC 4.2.3.3) CBSS-83333.1.peg.946;
Methylglyoxal Metabolism
fig|6666666.229933.peg.1090 CDS AJMF02000018.1 46707 47180 3 + 474 Inner membrane protein YccF CBSS-83333.1.peg.946
fig|6666666.229933.peg.1091 CDS AJMF02000018.1 47189 49330 2 + 2142 Putative efflux (PET) family inner membrane protein YccS CBSS-83333.1.peg.946
fig|6666666.229933.peg.1092 CDS AJMF02000018.1 49833 49327 -3 - 507 FIG001674: hypothetical protein - none -
fig|6666666.229933.peg.1093 CDS AJMF02000018.1 49896 50846 3 + 951 Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p YrdC-YciO-Sua5 protein family
fig|6666666.229933.peg.1094 CDS AJMF02000018.1 51957 51013 -3 - 945 Transketolase, C-terminal section (EC 2.2.1.1) Pentose phosphate pathway
fig|6666666.229933.peg.1095 CDS AJMF02000018.1 52771 51947 -1 - 825 Transketolase, N-terminal section (EC 2.2.1.1) Pentose phosphate pathway
fig|6666666.229933.peg.1096 CDS AJMF02000018.1 53989 52781 -1 - 1209 FIG00732228: membrane protein - none -
fig|6666666.229933.peg.1097 CDS AJMF02000018.1 54135 53998 -3 - 138 FIG00732228: membrane protein - none -
fig|6666666.229933.peg.1098 CDS AJMF02000018.1 54421 54152 -1 - 270 Putative sugar phosphotransferase component II B - none -
fig|6666666.229933.peg.1099 CDS AJMF02000018.1 55921 54923 -1 - 999 FIG00781545: hypothetical protein - none -
fig|6666666.229933.peg.1100 CDS AJMF02000018.1 58125 56182 -3 - 1944 ABC transporter ATP-binding protein - none -
fig|6666666.229933.peg.1101 CDS AJMF02000018.1 59519 58167 -2 - 1353 Putative dNTP triphosphohydrolase, associated with nucleotidase YfbR Purine conversions;
dNTP triphosphohydrolase protein family
fig|6666666.229933.peg.1102 CDS AJMF02000018.1 60213 59521 -3 - 693 LrgA-associated membrane protein LrgB Murein hydrolase regulation and cell death
fig|6666666.229933.peg.1103 CDS AJMF02000018.1 60572 60213 -2 - 360 Antiholin-like protein LrgA Murein hydrolase regulation and cell death
fig|6666666.229933.peg.1104 CDS AJMF02000018.1 61042 61542 1 + 501 Micrococcal nuclease (thermonuclease) homologs - none -
fig|6666666.229933.peg.1105 CDS AJMF02000018.1 61548 62744 3 + 1197 Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA Alanine biosynthesis;
mnm5U34 biosynthesis bacteria;
tRNA modification Archaea
fig|6666666.229933.peg.1106 CDS AJMF02000018.1 62741 63121 2 + 381 Cysteine desulfurase CsdA-CsdE, sulfur acceptor protein CsdE - none -
fig|6666666.229933.peg.1107 CDS AJMF02000018.1 64595 63165 -2 - 1431 ADP-heptose synthase (EC 2.7.-.-) / D-glycero-beta-D-manno-heptose 7-phosphate kinase LOS core oligosaccharide biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.229933.peg.1108 CDS AJMF02000018.1 64709 65644 2 + 936 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) KDO2-Lipid A biosynthesis
fig|6666666.229933.peg.1109 CDS AJMF02000018.1 66265 65702 -1 - 564 Putative oxidoreductase component of anaerobic dehydrogenases; Functional role page for Chaperone protein TorD - none -
fig|6666666.229933.peg.1110 CDS AJMF02000018.1 66876 66265 -3 - 612 NAD(P)H oxidoreductase YRKL (EC 1.6.99.-) @ Putative NADPH-quinone reductase (modulator of drug activity B) @ Flavodoxin 2 Flavodoxin;
Flavodoxin
fig|6666666.229933.peg.1111 CDS AJMF02000018.1 67331 66885 -2 - 447 Putative activity regulator of membrane protease YbbK - none -
fig|6666666.229933.peg.1112 CDS AJMF02000018.1 68281 67355 -1 - 927 Putative stomatin/prohibitin-family membrane protease subunit YbbK - none -
fig|6666666.229933.peg.1113 CDS AJMF02000018.1 69623 68814 -2 - 810 probable glucanotransferase (endo alpha-1,4 polygalactosaminidase related protein) - none -
fig|6666666.229933.peg.1114 CDS AJMF02000018.1 71425 72807 1 + 1383 Cytochrome c551 peroxidase (EC 1.11.1.5) Protection from Reactive Oxygen Species
fig|6666666.229933.peg.1115 CDS AJMF02000018.1 74052 72895 -3 - 1158 Ribonuclease D (EC 3.1.26.3) tRNA processing
fig|6666666.229933.peg.1116 CDS AJMF02000018.1 75811 74135 -1 - 1677 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) Biotin biosynthesis;
Biotin synthesis cluster
fig|6666666.229933.peg.1117 CDS AJMF02000018.1 76411 75854 -1 - 558 Starvation lipoprotein Slp paralog Carbon Starvation
fig|6666666.229933.peg.1118 CDS AJMF02000018.1 77165 76443 -2 - 723 TsaB protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Ribosome biogenesis bacterial;
YgjD and YeaZ;
YjeE;
YrdC-YciO-Sua5 protein family
fig|6666666.229933.peg.1119 CDS AJMF02000018.1 79117 77168 -1 - 1950 DinG family ATP-dependent helicase YoaA DNA repair, bacterial DinG and relatives
fig|6666666.229933.peg.1120 CDS AJMF02000018.1 79182 80000 3 + 819 Aldose 1-epimerase - none -
fig|6666666.229933.peg.1121 CDS AJMF02000018.1 80410 81267 1 + 858 FIG000875: Thioredoxin domain-containing protein EC-YbbN - none -
fig|6666666.229933.peg.1122 CDS AJMF02000018.1 81327 82280 3 + 954 Thioredoxin reductase (EC 1.8.1.9) Thioredoxin-disulfide reductase;
pyrimidine conversions
fig|6666666.229933.peg.1123 CDS AJMF02000018.1 82386 84149 3 + 1764 Transport ATP-binding protein CydD Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229933.peg.1124 CDS AJMF02000018.1 84149 85882 2 + 1734 Transport ATP-binding protein CydC Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229933.peg.1125 CDS AJMF02000018.1 86146 87012 1 + 867 Acyl-CoA thioesterase II (EC 3.1.2.-) Acyl-CoA thioesterase II
fig|6666666.229933.peg.1126 CDS AJMF02000018.1 87289 87161 -1 - 129 hypothetical protein - none -
fig|6666666.229933.peg.1127 CDS AJMF02000018.1 88071 87286 -3 - 786 serine/threonine protein kinase - none -
fig|6666666.229933.peg.1128 CDS AJMF02000018.1 88652 88092 -2 - 561 unknown - none -
fig|6666666.229933.peg.1129 CDS AJMF02000018.1 88815 89399 3 + 585 Putative lipoprotein yceB precursor - none -
fig|6666666.229933.peg.1130 CDS AJMF02000018.1 90370 89456 -1 - 915 ROK family Glucokinase with ambiguous substrate specificity - none -
fig|6666666.229933.peg.1131 CDS AJMF02000018.1 91089 90421 -3 - 669 Phosphatidylglycerophosphatase B (EC 3.1.3.27) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Osmotic stress cluster
fig|6666666.229933.peg.1132 CDS AJMF02000018.1 91238 91891 2 + 654 GTP cyclohydrolase II (EC 3.5.4.25) Molybdenum cofactor biosynthesis;
Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster
fig|6666666.229933.peg.1133 CDS AJMF02000018.1 92170 92910 1 + 741 FIG00698611: hypothetical protein - none -
fig|6666666.229933.peg.1134 CDS AJMF02000018.1 93575 93072 -2 - 504 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229933.peg.1135 CDS AJMF02000018.1 94078 93536 -1 - 543 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229933.peg.1136 CDS AJMF02000018.1 94897 94103 -1 - 795 DNA for glycosyltransferase, lytic transglycosylase, dTDP-4-rhamnose reductase Rhamnose containing glycans
fig|6666666.229933.peg.1137 CDS AJMF02000018.1 95700 94897 -3 - 804 Exodeoxyribonuclease III (EC 3.1.11.2) DNA repair, bacterial
fig|6666666.229933.peg.1138 CDS AJMF02000018.1 95969 95844 -2 - 126 hypothetical protein - none -
fig|6666666.229933.peg.1139 CDS AJMF02000018.1 97659 96241 -3 - 1419 Undecaprenyl-phosphate galactosephosphotransferase (EC 2.7.8.6) - none -
fig|6666666.229933.peg.1140 CDS AJMF02000018.1 98578 97622 -1 - 957 O antigen biosynthesis rhamnosyltransferase rfbN (EC 2.4.1.-) - none -
fig|6666666.229933.peg.1141 CDS AJMF02000018.1 99457 98588 -1 - 870 Alpha-L-Rha alpha-1,3-L-rhamnosyltransferase (EC 2.4.1.-) Rhamnose containing glycans
fig|6666666.229933.peg.1142 CDS AJMF02000018.1 100534 99830 -1 - 705 Glycosyltransferase involved in cell wall biogenesis (EC 2.4.-.-) - none -
fig|6666666.229933.peg.1143 CDS AJMF02000018.1 102254 100914 -2 - 1341 membrane protein, related to Actinobacillus protein (1944168) - none -
fig|6666666.229933.peg.1144 CDS AJMF02000018.1 102933 102241 -3 - 693 NDP-hexose 4-ketoreductase UrdR - none -
fig|6666666.229933.peg.1145 CDS AJMF02000018.1 104161 102905 -1 - 1257 DNA for glycosyltransferase, lytic transglycosylase, dTDP-4-rhamnose reductase Rhamnose containing glycans
fig|6666666.229933.peg.1146 CDS AJMF02000018.1 105132 104161 -3 - 972 O antigen biosynthesis rhamnosyltransferase rfbN (EC 2.4.1.-) - none -
fig|6666666.229933.peg.1147 CDS AJMF02000018.1 105755 105129 -2 - 627 Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40) Rhamnose containing glycans
fig|6666666.229933.peg.1148 CDS AJMF02000018.1 106660 105869 -1 - 792 O-antigen export system permease protein RfbD - none -
fig|6666666.229933.peg.1149 CDS AJMF02000018.1 107233 106694 -1 - 540 dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) Capsular heptose biosynthesis;
Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229933.peg.1150 CDS AJMF02000018.1 108114 107236 -3 - 879 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229933.peg.1151 CDS AJMF02000018.1 108891 108115 -3 - 777 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229933.peg.1152 CDS AJMF02000018.1 110132 109065 -2 - 1068 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229933.peg.1153 CDS AJMF02000018.1 111332 110202 -2 - 1131 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) Murein Hydrolases;
Peptidoglycan Biosynthesis
fig|6666666.229933.peg.1154 CDS AJMF02000018.1 112119 111334 -3 - 786 Glucosyl-3-phosphoglycerate synthase (EC 2.4.1.266) - none -
fig|6666666.229933.peg.1155 CDS AJMF02000018.1 113093 112212 -2 - 882 Glycosyltransferase - none -
fig|6666666.229933.peg.1156 CDS AJMF02000018.1 114286 113093 -1 - 1194 DNA for glycosyltransferase, lytic transglycosylase, dTDP-4-rhamnose reductase Rhamnose containing glycans
fig|6666666.229933.peg.1157 CDS AJMF02000018.1 115071 114295 -3 - 777 Lipopolysaccharide core biosynthesis glycosyltransferase WadA - none -
fig|6666666.229933.peg.1158 CDS AJMF02000018.1 115202 116725 2 + 1524 putative flippase - none -
fig|6666666.229933.peg.1159 CDS AJMF02000018.1 116722 117678 1 + 957 Polysaccharide polymerization protein - none -
fig|6666666.229933.peg.1160 CDS AJMF02000018.1 117787 118038 1 + 252 YefM protein (antitoxin to YoeB) Toxin-antitoxin replicon stabilization systems
fig|6666666.229933.peg.1161 CDS AJMF02000018.1 118035 118289 3 + 255 YoeB toxin protein Toxin-antitoxin replicon stabilization systems
fig|6666666.229933.peg.1162 CDS AJMF02000018.1 118302 119045 3 + 744 Probable transmembrane protein - none -
fig|6666666.229933.peg.1163 CDS AJMF02000018.1 119018 119179 2 + 162 hypothetical protein - none -
fig|6666666.229933.peg.1164 CDS AJMF02000018.1 119222 120049 2 + 828 DNA ligase (ATP) (EC 6.5.1.1) DNA ligases
fig|6666666.229933.peg.1165 CDS AJMF02000018.1 122356 120182 -1 - 2175 ATP-dependent DNA helicase UvrD/PcrA DNA repair, bacterial UvrD and related helicases
fig|6666666.229933.peg.1166 CDS AJMF02000018.1 123879 122530 -3 - 1350 Low-affinity gluconate/H+ symporter GntU D-gluconate and ketogluconates metabolism
fig|6666666.229933.peg.1167 CDS AJMF02000018.1 124097 124615 2 + 519 Gluconokinase (EC 2.7.1.12) D-gluconate and ketogluconates metabolism;
Entner-Doudoroff Pathway
fig|6666666.229933.peg.1168 CDS AJMF02000018.1 124734 124612 -3 - 123 hypothetical protein - none -
fig|6666666.229933.peg.1169 CDS AJMF02000018.1 125683 124685 -1 - 999 Gluconate utilization system Gnt-I transcriptional repressor D-gluconate and ketogluconates metabolism
fig|6666666.229933.peg.1170 CDS AJMF02000018.1 126556 125732 -1 - 825 Formate dehydrogenase chain D (EC 1.2.1.2) Formate hydrogenase
fig|6666666.229933.peg.1171 CDS AJMF02000018.1 127587 127099 -3 - 489 Phage protein - none -
fig|6666666.229933.peg.1172 CDS AJMF02000018.1 127946 127599 -2 - 348 Mu phage DNA transposition protein B - none -
fig|6666666.229933.peg.1173 CDS AJMF02000018.1 129169 127982 -1 - 1188 Transposase - none -
fig|6666666.229933.peg.1174 CDS AJMF02000018.1 129177 129644 3 + 468 Formate dehydrogenase O beta subunit (EC 1.2.1.2) Formate dehydrogenase;
Formate hydrogenase
fig|6666666.229933.peg.1175 CDS AJMF02000018.1 129637 130350 1 + 714 Formate dehydrogenase -O, gamma subunit (EC 1.2.1.2) Anaerobic respiratory reductases;
Formate hydrogenase
fig|6666666.229933.peg.1176 CDS AJMF02000018.1 132440 130917 -2 - 1524 [NiFe] hydrogenase metallocenter assembly protein HypF G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229933.peg.1177 CDS AJMF02000018.1 133478 134077 2 + 600 Hydrogenase-4 component A - none -
fig|6666666.229933.peg.1178 CDS AJMF02000018.1 134110 136131 1 + 2022 Hydrogenase-4 component B (EC 1.-.-.-) / Formate hydrogenlyase subunit 3 Formate hydrogenase;
Formate hydrogenase
fig|6666666.229933.peg.1179 CDS AJMF02000018.1 136142 137104 2 + 963 Hydrogenase-4 component C - none -
fig|6666666.229933.peg.1180 CDS AJMF02000018.1 137117 138562 2 + 1446 Hydrogenase-4 component D - none -
fig|6666666.229933.peg.1181 CDS AJMF02000018.1 138573 139211 3 + 639 Hydrogenase-4 component E (EC 1.-.-.-) Formate hydrogenase
fig|6666666.229933.peg.1182 CDS AJMF02000018.1 139216 140754 1 + 1539 Hydrogenase-4 component F - none -
fig|6666666.229933.peg.1183 CDS AJMF02000018.1 140773 142503 1 + 1731 Formate hydrogenlyase subunit 5 Formate hydrogenase
fig|6666666.229933.peg.1184 CDS AJMF02000018.1 142517 143164 2 + 648 Formate hydrogenlyase complex 3 iron-sulfur protein; Formate hydrogenlyase subunit 6; Ni,Fe-hydrogenase III medium subunit Formate hydrogenase
fig|6666666.229933.peg.1185 CDS AJMF02000018.1 143161 143937 1 + 777 Formate hydrogenlyase subunit 7 Formate hydrogenase
fig|6666666.229933.peg.1186 CDS AJMF02000018.1 144072 144476 3 + 405 Formate hydrogenlyase transcriptional activator Formate hydrogenase
fig|6666666.229933.peg.1187 CDS AJMF02000018.1 144505 144927 1 + 423 Hydrogenase 3 maturation protease (EC 3.4.-.-) - none -
fig|6666666.229933.peg.1188 CDS AJMF02000018.1 145456 147678 1 + 2223 Formate dehydrogenase H (EC 1.2.1.2) @ selenocysteine-containing Formate dehydrogenase
fig|6666666.229933.peg.1191 CDS AJMF02000018.1 149875 148706 -1 - 1170 Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) - none -
fig|6666666.229933.peg.1192 CDS AJMF02000018.1 151285 150062 -1 - 1224 Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61) Dehydrogenase complexes
fig|6666666.229933.peg.1193 CDS AJMF02000018.1 151287 151421 3 + 135 hypothetical protein - none -
fig|6666666.229933.peg.1194 CDS AJMF02000018.1 154217 151410 -2 - 2808 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) Dehydrogenase complexes
fig|6666666.229933.peg.1195 CDS AJMF02000018.1 154302 154424 3 + 123 hypothetical protein - none -
fig|6666666.229933.peg.1196 CDS AJMF02000018.1 155131 154493 -1 - 639 Hypothetical metal-binding enzyme, YcbL homolog CBSS-228400.4.peg.1623
fig|6666666.229933.peg.1197 CDS AJMF02000018.1 155655 155209 -3 - 447 FIG001587: exported protein CBSS-228400.4.peg.1623
fig|6666666.229933.peg.1198 CDS AJMF02000018.1 157342 155834 -1 - 1509 L,D-transpeptidase YcbB CBSS-228400.4.peg.1623
fig|6666666.229933.peg.1199 CDS AJMF02000018.1 159477 157420 -3 - 2058 Tail-specific protease precursor (EC 3.4.21.102) - none -
fig|6666666.229933.peg.1200 CDS AJMF02000018.1 160159 159551 -1 - 609 ProQ: influences osmotic activation of compatible solute ProP - none -
fig|6666666.229933.peg.1201 CDS AJMF02000018.1 160377 161660 3 + 1284 Paraquat-inducible protein A Oxidative stress
fig|6666666.229933.peg.1202 CDS AJMF02000018.1 161623 164280 1 + 2658 Paraquat-inducible protein B Oxidative stress
fig|6666666.229933.peg.1203 CDS AJMF02000018.1 165600 164356 -3 - 1245 Tripeptide aminopeptidase (EC 3.4.11.4) - none -
fig|6666666.229933.peg.1204 CDS AJMF02000018.1 165864 166982 3 + 1119 Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) Polyamine Metabolism
fig|6666666.229933.peg.1205 CDS AJMF02000018.1 166966 167826 1 + 861 Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) Polyamine Metabolism
fig|6666666.229933.peg.1206 CDS AJMF02000018.1 167826 168599 3 + 774 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) Polyamine Metabolism
fig|6666666.229933.peg.1207 CDS AJMF02000018.1 168730 169827 1 + 1098 ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1) Polyamine Metabolism
fig|6666666.229933.peg.1208 CDS AJMF02000018.1 169949 170845 2 + 897 Cytidine deaminase (EC 3.5.4.5) Murein hydrolase regulation and cell death;
pyrimidine conversions;
tRNA modification Bacteria
fig|6666666.229933.peg.1209 CDS AJMF02000018.1 170943 170830 -3 - 114 hypothetical protein - none -
fig|6666666.229933.peg.1210 CDS AJMF02000018.1 172240 170924 -1 - 1317 Seryl-tRNA synthetase (EC 6.1.1.11) CBSS-326442.4.peg.1852;
Glycine and Serine Utilization;
tRNA aminoacylation, Ser
fig|6666666.229933.peg.1211 CDS AJMF02000018.1 172548 174215 3 + 1668 C4-dicarboxylate transporter DcuB - none -
fig|6666666.229933.peg.1212 CDS AJMF02000018.1 176052 174712 -3 - 1341 FIG065221: Holliday junction DNA helicase CBSS-83333.1.peg.876
fig|6666666.229933.peg.1213 CDS AJMF02000018.1 176682 176065 -3 - 618 Outer membrane lipoprotein carrier protein LolA CBSS-83333.1.peg.876;
Lipopolysaccharide assembly;
Lipoprotein sorting system
fig|6666666.229933.peg.1214 CDS AJMF02000018.1 179519 176775 -2 - 2745 Cell division protein FtsK Bacterial Cell Division;
Bacterial Cytoskeleton;
Bacterial RNA-metabolizing Zn-dependent hydrolases;
CBSS-83333.1.peg.876
fig|6666666.229933.peg.1215 CDS AJMF02000018.1 180002 179523 -2 - 480 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229933.peg.1216 CDS AJMF02000018.1 181914 180541 -3 - 1374 DNA repair protein RadA DNA repair, bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229933.peg.1217 CDS AJMF02000018.1 183071 181917 -2 - 1155 Adenylate cyclase (EC 4.6.1.1) cAMP signaling in bacteria
fig|6666666.229933.peg.1218 CDS AJMF02000018.1 183236 183916 2 + 681 Phosphate transport regulator (distant homolog of PhoU) Phosphate metabolism
fig|6666666.229933.peg.1219 CDS AJMF02000018.1 183942 185207 3 + 1266 Probable low-affinity inorganic phosphate transporter Phosphate metabolism
fig|6666666.229933.peg.1220 CDS AJMF02000018.1 185276 185887 2 + 612 SH3 domain protein - none -
fig|6666666.229933.peg.1221 CDS AJMF02000018.1 185887 187191 1 + 1305 tRNA nucleotidyltransferase (EC 2.7.7.21) (EC 2.7.7.25) Polyadenylation bacterial;
tRNA nucleotidyltransferase
fig|6666666.229933.peg.1222 CDS AJMF02000018.1 187226 187849 2 + 624 Outer membrane lipoprotein LolB precursor - none -
fig|6666666.229933.peg.1223 CDS AJMF02000018.1 187849 188760 1 + 912 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148) A Gammaproteobacteria Cluster Relating to Translation;
Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.229933.peg.1224 CDS AJMF02000018.1 188801 189751 2 + 951 Ribose-phosphate pyrophosphokinase (EC 2.7.6.1) A Gammaproteobacteria Cluster Relating to Translation;
Pentose phosphate pathway;
Transcription repair cluster
fig|6666666.229933.peg.1225 CDS AJMF02000018.1 189929 190075 2 + 147 hypothetical protein - none -
fig|6666666.229933.peg.1226 CDS AJMF02000018.1 190384 191529 1 + 1146 L-lactate dehydrogenase (EC 1.1.2.3) Lactate utilization;
Respiratory dehydrogenases 1
fig|6666666.229933.peg.1227 CDS AJMF02000018.1 191772 193361 3 + 1590 L-lactate permease Lactate utilization
fig|6666666.229933.peg.1228 CDS AJMF02000018.1 193848 193516 -3 - 333 UPF0265 protein YeeX Broadly distributed proteins not in subsystems
fig|6666666.229933.peg.1229 CDS AJMF02000018.1 193873 193989 1 + 117 hypothetical protein - none -
fig|6666666.229933.peg.1230 CDS AJMF02000018.1 194048 195130 2 + 1083 Phosphoserine aminotransferase (EC 2.6.1.52) Glycine and Serine Utilization;
Pyridoxin (Vitamin B6) Biosynthesis;
Serine Biosynthesis
fig|6666666.229933.peg.1231 CDS AJMF02000018.1 195157 196302 1 + 1146 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) @ Histidinol-phosphate aminotransferase (EC 2.6.1.9) Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229933.peg.1232 CDS AJMF02000018.1 196313 197644 2 + 1332 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229933.peg.1233 CDS AJMF02000018.1 198199 197732 -1 - 468 Ribonuclease HI (EC 3.1.26.4) CBSS-228410.1.peg.134;
CBSS-342610.3.peg.1536;
Ribonuclease H
fig|6666666.229933.peg.1234 CDS AJMF02000018.1 198267 199028 3 + 762 DNA polymerase III epsilon subunit (EC 2.7.7.7) CBSS-228410.1.peg.134;
CBSS-342610.3.peg.1536
fig|6666666.229933.peg.1235 CDS AJMF02000018.1 199480 199734 1 + 255 RelB/StbD replicon stabilization protein (antitoxin to RelE/StbE) Toxin-antitoxin replicon stabilization systems
fig|6666666.229933.peg.1236 CDS AJMF02000018.1 199724 200014 2 + 291 RelE/StbE replicon stabilization toxin Toxin-antitoxin replicon stabilization systems
fig|6666666.229933.peg.1237 CDS AJMF02000018.1 200409 200071 -3 - 339 conserved hypothetical protein - none -
fig|6666666.229933.peg.1238 CDS AJMF02000018.1 200750 201202 2 + 453 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) Ammonia assimilation;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229933.peg.1239 CDS AJMF02000018.1 201373 202761 1 + 1389 Putative protease - none -
fig|6666666.229933.peg.1240 CDS AJMF02000018.1 203058 204149 3 + 1092 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) CBSS-211586.1.peg.2832;
Queuosine-Archaeosine Biosynthesis;
Scaffold proteins for [4Fe-4S] cluster assembly (MRP family);
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229933.peg.1241 CDS AJMF02000018.1 205329 204193 -3 - 1137 Periplasmic aromatic amino acid aminotransferase beta precursor (EC 2.6.1.57) Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229933.peg.1242 CDS AJMF02000018.1 205802 206953 2 + 1152 tRNA-guanine transglycosylase (EC 2.4.2.29) CBSS-211586.1.peg.2832;
Queuosine-Archaeosine Biosynthesis;
Scaffold proteins for [4Fe-4S] cluster assembly (MRP family);
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229933.peg.1243 CDS AJMF02000018.1 207088 207228 1 + 141 hypothetical protein - none -
fig|6666666.229933.peg.1244 CDS AJMF02000018.1 207245 207544 2 + 300 Preprotein translocase subunit YajC (TC 3.A.5.1.1) CBSS-211586.1.peg.2832
fig|6666666.229933.peg.1245 CDS AJMF02000018.1 207608 209425 2 + 1818 Protein-export membrane protein SecD (TC 3.A.5.1.1) CBSS-211586.1.peg.2832
fig|6666666.229933.peg.1246 CDS AJMF02000018.1 209442 210407 3 + 966 Protein-export membrane protein SecF (TC 3.A.5.1.1) CBSS-211586.1.peg.2832
fig|6666666.229933.peg.1247 CDS AJMF02000018.1 210627 213254 3 + 2628 Iron siderophore receptor protein - none -
fig|6666666.229933.peg.1248 CDS AJMF02000018.1 213501 213325 -3 - 177 hypothetical protein - none -
fig|6666666.229933.peg.1249 CDS AJMF02000018.1 213604 216225 1 + 2622 Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) 5-FCL-like protein;
Butanol Biosynthesis;
Butanol Biosynthesis;
Fermentations: Lactate;
Fermentations: Mixed acid;
Fermentations: Mixed acid;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229933.peg.1250 CDS AJMF02000018.1 216601 216308 -1 - 294 Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27) - none -
fig|6666666.229933.peg.1251 CDS AJMF02000018.1 216997 216839 -1 - 159 hypothetical protein - none -
fig|6666666.229933.peg.1252 CDS AJMF02000018.1 217289 217140 -2 - 150 hypothetical protein - none -
fig|6666666.229933.peg.1253 CDS AJMF02000018.1 217770 217546 -3 - 225 hypothetical protein - none -
fig|6666666.229933.peg.1254 CDS AJMF02000018.1 218447 218593 2 + 147 FIG00697497: hypothetical protein - none -
fig|6666666.229933.peg.1255 CDS AJMF02000018.1 218918 219133 2 + 216 hypothetical protein - none -
fig|6666666.229933.peg.1256 CDS AJMF02000018.1 219471 219629 3 + 159 hypothetical protein - none -
fig|6666666.229933.peg.1257 CDS AJMF02000018.1 219626 219844 2 + 219 hypothetical protein - none -
fig|6666666.229933.peg.1258 CDS AJMF02000018.1 219946 220179 1 + 234 hypothetical protein - none -
fig|6666666.229933.peg.1259 CDS AJMF02000018.1 220646 221485 2 + 840 Predicted transcriptional regulator of the myo-inositol catabolic operon - none -
fig|6666666.229933.peg.1260 CDS AJMF02000018.1 222712 221525 -1 - 1188 5-keto-2-deoxygluconokinase (EC 2.7.1.92) / uncharacterized domain - none -
fig|6666666.229933.peg.1261 CDS AJMF02000018.1 222711 223580 3 + 870 Myo-inositol 2-dehydrogenase 1 (EC 1.1.1.18) - none -
fig|6666666.229933.peg.1262 CDS AJMF02000018.1 225283 223850 -1 - 1434 RTX toxin transporter, determinant D - none -
fig|6666666.229933.peg.1263 CDS AJMF02000018.1 227421 225298 -3 - 2124 Methionine ABC transporter ATP-binding protein Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229933.peg.1264 CDS AJMF02000018.1 230657 227490 -2 - 3168 bifunctional hemolysin-adenylate cyclase precursor cAMP signaling in bacteria
fig|6666666.229933.peg.1265 CDS AJMF02000018.1 231176 230670 -2 - 507 RTX toxin activating lysine-acyltransferase (EC 2.3.1.-) - none -
fig|6666666.229933.peg.1266 CDS AJMF02000018.1 233546 232284 -2 - 1263 Serine hydroxymethyltransferase (EC 2.1.2.1) 5-FCL-like protein;
Glycine Biosynthesis;
Glycine and Serine Utilization;
Serine Biosynthesis;
YrdC-YciO-Sua5 protein family
fig|6666666.229933.peg.1267 CDS AJMF02000018.1 234223 233681 -1 - 543 hypothetical protein - none -
fig|6666666.229933.peg.1268 CDS AJMF02000018.1 234599 234447 -2 - 153 hypothetical protein - none -
fig|6666666.229933.peg.1269 CDS AJMF02000018.1 234751 234602 -1 - 150 hypothetical protein - none -
fig|6666666.229933.peg.1270 CDS AJMF02000018.1 235842 234838 -3 - 1005 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) RNA methylation
fig|6666666.229933.peg.1271 CDS AJMF02000018.1 235898 236347 2 + 450 DNA polymerase III psi subunit (EC 2.7.7.7) - none -
fig|6666666.229933.peg.1272 CDS AJMF02000018.1 236357 236800 2 + 444 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Ribosome biogenesis bacterial;
YrdC-YciO-Sua5 protein family
fig|6666666.229933.peg.1273 CDS AJMF02000018.1 240218 236802 -2 - 3417 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) DNA repair, bacterial RecBCD pathway
fig|6666666.229933.peg.1274 CDS AJMF02000018.1 240978 240286 -3 - 693 Type II secretory pathway, component PulJ - none -
fig|6666666.229933.peg.1275 CDS AJMF02000018.1 241271 241029 -2 - 243 Type II secretory pathway, pseudopilin PulG - none -
fig|6666666.229933.peg.1276 CDS AJMF02000018.1 242245 241778 -1 - 468 18K peptidoglycan-associated outer membrane lipoprotein; Peptidoglycan-associated lipoprotein precursor; Outer membrane protein P6; OmpA/MotB precursor Ton and Tol transport systems
fig|6666666.229933.peg.1277 CDS AJMF02000018.1 243540 242260 -3 - 1281 tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins Ton and Tol transport systems
fig|6666666.229933.peg.1278 CDS AJMF02000018.1 244783 243575 -1 - 1209 TolA protein Ton and Tol transport systems
fig|6666666.229933.peg.1279 CDS AJMF02000018.1 245222 244800 -2 - 423 Tol biopolymer transport system, TolR protein Ton and Tol transport systems
fig|6666666.229933.peg.1280 CDS AJMF02000018.1 245997 245308 -3 - 690 MotA/TolQ/ExbB proton channel family protein Ton and Tol transport systems
fig|6666666.229933.peg.1281 CDS AJMF02000018.1 246431 246027 -2 - 405 4-hydroxybenzoyl-CoA thioesterase family active site Ton and Tol transport systems
fig|6666666.229933.peg.1282 CDS AJMF02000018.1 246496 246615 1 + 120 hypothetical protein - none -
fig|6666666.229933.peg.1283 CDS AJMF02000018.1 248076 246940 -3 - 1137 Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229933.peg.1284 CDS AJMF02000018.1 249560 248091 -2 - 1470 Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229933.peg.1285 CDS AJMF02000018.1 250108 250419 1 + 312 Chromosome segregation ATPases - none -
fig|6666666.229933.peg.1286 CDS AJMF02000018.1 251486 250473 -2 - 1014 Holliday junction DNA helicase RuvB RuvABC plus a hypothetical
fig|6666666.229933.peg.1287 CDS AJMF02000018.1 252115 251501 -1 - 615 Holliday junction DNA helicase RuvA RuvABC plus a hypothetical
fig|6666666.229933.peg.1288 CDS AJMF02000018.1 252751 252179 -1 - 573 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) RuvABC plus a hypothetical
fig|6666666.229933.peg.1289 CDS AJMF02000018.1 253217 252807 -2 - 411 excinuclease ABC subunit A - none -
fig|6666666.229933.peg.1290 CDS AJMF02000018.1 253969 253229 -1 - 741 FIG000859: hypothetical protein YebC Riboflavin, FMN and FAD metabolism in plants;
RuvABC plus a hypothetical
fig|6666666.229933.peg.1291 CDS AJMF02000018.1 254137 254003 -1 - 135 hypothetical protein - none -
fig|6666666.229933.peg.1292 CDS AJMF02000018.1 255820 254552 -1 - 1269 Mn2+ and Fe2+ transporters of the NRAMP family - none -
fig|6666666.229933.peg.1293 CDS AJMF02000018.1 256129 255941 -1 - 189 hypothetical protein - none -
fig|6666666.229933.peg.1294 CDS AJMF02000018.1 257990 256212 -2 - 1779 Aspartyl-tRNA synthetase (EC 6.1.1.12) tRNA aminoacylation, Asp and Asn
fig|6666666.229933.peg.1295 CDS AJMF02000018.1 258797 259522 2 + 726 tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229933.peg.1296 CDS AJMF02000018.1 262169 259602 -2 - 2568 FIG00362583: hypothetical protein - none -
fig|6666666.229933.peg.1297 CDS AJMF02000018.1 263643 262312 -3 - 1332 Glycerol-3-phosphate transporter - none -
fig|6666666.229933.peg.1298 CDS AJMF02000018.1 264044 265996 2 + 1953 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229933.peg.1299 CDS AJMF02000018.1 266155 266562 1 + 408 Lactoylglutathione lyase (EC 4.4.1.5) Glutathione: Non-redox reactions;
Methylglyoxal Metabolism
fig|6666666.229933.peg.1300 CDS AJMF02000018.1 266649 267302 3 + 654 Ribonuclease T (EC 3.1.13.-) tRNA processing
fig|6666666.229933.peg.1301 CDS AJMF02000018.1 267654 269006 3 + 1353 Histidine permease YuiF - none -
fig|6666666.229933.peg.1302 CDS AJMF02000018.1 269070 269636 3 + 567 Primosomal replication protein N@1@1 - none -
fig|6666666.229933.peg.1303 CDS AJMF02000018.1 271117 269693 -1 - 1425 tRNA-i(6)A37 methylthiotransferase Methylthiotransferases;
tRNA-methylthiotransferase containing cluster;
tRNA modification Archaea;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229933.peg.1304 CDS AJMF02000018.1 271225 271353 1 + 129 hypothetical protein - none -
fig|6666666.229933.peg.1305 CDS AJMF02000018.1 271461 271604 3 + 144 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-) CBSS-87626.3.peg.3639;
Ubiquinone Biosynthesis
fig|6666666.229933.peg.1306 CDS AJMF02000018.1 273049 272318 -1 - 732 FIG053235: Diacylglucosamine hydrolase like Llipid A biosynthesis cluster
fig|6666666.229933.peg.1307 CDS AJMF02000018.1 274040 273051 -2 - 990 Octaprenyl diphosphate synthase (EC 2.5.1.90) Isoprenoinds for Quinones;
Polyprenyl Diphosphate Biosynthesis
fig|6666666.229933.peg.1308 CDS AJMF02000018.1 274288 274599 1 + 312 LSU ribosomal protein L21p CBSS-176279.3.peg.868;
Ribosome LSU bacterial
fig|6666666.229933.peg.1309 CDS AJMF02000018.1 274620 274877 3 + 258 LSU ribosomal protein L27p CBSS-176279.3.peg.868;
Ribosome LSU bacterial
fig|6666666.229933.peg.1310 CDS AJMF02000018.1 274949 275881 2 + 933 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229933.peg.1311 CDS AJMF02000018.1 275959 276876 1 + 918 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229933.peg.1312 CDS AJMF02000018.1 276913 278088 1 + 1176 GTP-binding protein Obg CBSS-176279.3.peg.868;
Universal GTPases
fig|6666666.229933.peg.1313 CDS AJMF02000018.1 278204 278085 -2 - 120 tmRNA-binding protein SmpB Heat shock dnaK gene cluster extended;
Translation termination factors bacterial
fig|6666666.229933.peg.1314 CDS AJMF02000018.1 278638 278156 -1 - 483 tmRNA-binding protein SmpB Heat shock dnaK gene cluster extended;
Translation termination factors bacterial
fig|6666666.229933.peg.1315 CDS AJMF02000018.1 279013 280638 1 + 1626 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229933.peg.1316 CDS AJMF02000018.1 280739 281005 2 + 267 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229933.peg.1317 CDS AJMF02000018.1 281022 281663 3 + 642 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229933.peg.1318 CDS AJMF02000018.1 281673 282611 3 + 939 Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229933.peg.1319 CDS AJMF02000018.1 282621 283604 3 + 984 Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229933.peg.1320 CDS AJMF02000018.1 283601 284599 2 + 999 Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229933.peg.1321 CDS AJMF02000018.1 285413 284706 -2 - 708 Aerobic respiration control protein arcA - none -
fig|6666666.229933.peg.1322 CDS AJMF02000018.1 285815 285675 -2 - 141 LSU ribosomal protein L36p Ribosome LSU bacterial
fig|6666666.229933.peg.1323 CDS AJMF02000018.1 286091 285825 -2 - 267 LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-independent Ribosome LSU bacterial;
Ribosome LSU bacterial
fig|6666666.229933.peg.1324 CDS AJMF02000018.1 286872 286303 -3 - 570 Lysine decarboxylase family - none -
fig|6666666.229933.peg.1325 CDS AJMF02000018.1 287015 288805 2 + 1791 Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8) Biogenesis of c-type cytochromes;
Periplasmic disulfide interchange
fig|6666666.229933.peg.1326 CDS AJMF02000018.1 288907 288794 -1 - 114 hypothetical protein - none -
fig|6666666.229933.peg.1327 CDS AJMF02000018.1 288885 289274 3 + 390 INTEGRAL MEMBRANE PROTEIN (Rhomboid family) - none -
fig|6666666.229933.peg.1328 CDS AJMF02000018.1 292554 289672 -3 - 2883 Ribonuclease E (EC 3.1.26.12) RNA processing and degradation, bacterial;
Ribosome biogenesis bacterial
fig|6666666.229933.peg.1329 CDS AJMF02000018.1 292797 292919 3 + 123 hypothetical protein - none -
fig|6666666.229933.peg.1330 CDS AJMF02000018.1 293029 293988 1 + 960 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) RNA pseudouridine syntheses;
Ribosome biogenesis bacterial
fig|6666666.229933.peg.1331 CDS AJMF02000018.1 294402 294187 -3 - 216 Thioredoxin - none -
fig|6666666.229933.peg.1332 CDS AJMF02000018.1 295604 294609 -2 - 996 D-lactate dehydrogenase (EC 1.1.1.28) Fermentations: Lactate;
Fermentations: Mixed acid
fig|6666666.229933.peg.1333 CDS AJMF02000018.1 296758 295628 -1 - 1131 Cystathionine gamma-synthase (EC 2.5.1.48) Methionine Biosynthesis
fig|6666666.229933.peg.1334 CDS AJMF02000018.1 297739 298440 1 + 702 Peptidoglycan hydrolase VirB1, involved in T-DNA transfer - none -
fig|6666666.229933.peg.1335 CDS AJMF02000018.1 298455 298778 3 + 324 Major pilus subunit of type IV secretion complex, VirB2 - none -
fig|6666666.229933.peg.1336 CDS AJMF02000018.1 298759 298920 1 + 162 hypothetical protein - none -
fig|6666666.229933.peg.1337 CDS AJMF02000018.1 298917 299807 3 + 891 Forms the bulk of type IV secretion complex that spans outer membrane and periplasm (VirB9) - none -
fig|6666666.229933.peg.1338 CDS AJMF02000018.1 299818 300624 1 + 807 hypothetical protein - none -
fig|6666666.229933.peg.1339 CDS AJMF02000018.1 301520 300861 -2 - 660 putative membrane protein - none -
fig|6666666.229933.peg.1340 CDS AJMF02000018.1 301507 301641 1 + 135 hypothetical protein - none -
fig|6666666.229933.peg.1341 CDS AJMF02000018.1 301656 302420 3 + 765 Permeases of the drug/metabolite transporter (DMT) superfamily - none -
fig|6666666.229933.peg.1342 CDS AJMF02000018.1 303691 302684 -1 - 1008 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) Cluster Ytf and putative sugar transporter;
Glycolysis and Gluconeogenesis;
Putative sugar ABC transporter (ytf cluster)
fig|6666666.229933.peg.1343 CDS AJMF02000018.1 303849 305222 3 + 1374 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (EC 6.3.2.-) Peptidoglycan biosynthesis--gjo;
Recycling of Peptidoglycan Amino Acids
fig|6666666.229933.peg.1344 CDS AJMF02000018.1 305602 306720 1 + 1119 Membrane-bound lytic murein transglycosylase A precursor (EC 3.2.1.-) Murein Hydrolases
fig|6666666.229933.peg.1345 CDS AJMF02000018.1 306720 307490 3 + 771 HesA/MoeB/ThiF family protein related to EC-YgdL - none -
fig|6666666.229933.peg.1346 CDS AJMF02000018.1 307590 308609 3 + 1020 Zinc ABC transporter, periplasmic-binding protein ZnuA - none -
fig|6666666.229933.peg.1347 CDS AJMF02000018.1 308737 309549 1 + 813 Outer membrane lipoprotein e (P4) / NMN 5@1-nucleotidase, extracellular (EC 3.1.3.5) NAD and NADP cofactor biosynthesis global
fig|6666666.229933.peg.1348 CDS AJMF02000018.1 310120 309629 -1 - 492 FIG001943: hypothetical protein YajQ Broadly distributed proteins not in subsystems
fig|6666666.229933.peg.1349 CDS AJMF02000018.1 311075 310131 -2 - 945 Phosphoserine phosphatase (EC 3.1.3.3) Glycine and Serine Utilization;
Serine Biosynthesis;
Serine Biosynthesis
fig|6666666.229933.peg.1350 CDS AJMF02000018.1 311151 311828 3 + 678 Lipoate-protein ligase A Lipoic acid metabolism
fig|6666666.229933.peg.1351 CDS AJMF02000018.1 311904 311785 -3 - 120 hypothetical protein - none -
fig|6666666.229933.peg.1352 CDS AJMF02000018.1 312201 311938 -3 - 264 SSU ribosomal protein S20p Ribosome SSU bacterial
fig|6666666.229933.peg.1353 CDS AJMF02000018.1 312469 314046 1 + 1578 Proposed peptidoglycan lipid II flippase MurJ Peptidoglycan lipid II flippase
fig|6666666.229933.peg.1354 CDS AJMF02000018.1 314124 315050 3 + 927 Riboflavin kinase (EC 2.7.1.26) / FMN adenylyltransferase (EC 2.7.7.2) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin, FMN and FAD metabolism in plants;
riboflavin to FAD;
riboflavin to FAD
fig|6666666.229933.peg.1355 CDS AJMF02000018.1 315264 315428 3 + 165 FIG01055344: hypothetical protein - none -
fig|6666666.229933.peg.1356 CDS AJMF02000018.1 315466 318288 1 + 2823 Isoleucyl-tRNA synthetase (EC 6.1.1.5) tRNA aminoacylation, Ile
fig|6666666.229933.peg.1357 CDS AJMF02000018.1 318368 318862 2 + 495 Lipoprotein signal peptidase (EC 3.4.23.36) Lipoprotein Biosynthesis;
Signal peptidase
fig|6666666.229933.peg.1358 CDS AJMF02000018.1 318862 319806 1 + 945 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.229933.peg.1359 CDS AJMF02000018.1 321558 320260 -3 - 1299 Cell division trigger factor (EC 5.2.1.8) Bacterial Cell Division
fig|6666666.229933.peg.1360 CDS AJMF02000018.1 322615 321722 -1 - 894 Tyrosine recombinase XerD - none -
fig|6666666.229933.peg.1361 CDS AJMF02000018.1 323778 322618 -3 - 1161 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) A Hypothetical Protein Related to Proline Metabolism;
CBSS-630.2.peg.3360;
Proline Synthesis
fig|6666666.229933.peg.1362 CDS AJMF02000018.1 324017 323778 -2 - 240 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) A Hypothetical Protein Related to Proline Metabolism;
CBSS-630.2.peg.3360;
Proline Synthesis
fig|6666666.229933.peg.1363 CDS AJMF02000018.1 324481 324023 -1 - 459 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) A Hypothetical Protein Related to Proline Metabolism;
CBSS-630.2.peg.3360;
Proline Synthesis
fig|6666666.229933.peg.1364 CDS AJMF02000018.1 324544 325449 1 + 906 DNA recombination-dependent growth factor C DNA repair, bacterial
fig|6666666.229933.peg.1365 CDS AJMF02000018.1 325863 325540 -3 - 324 opacity associated protein - none -
fig|6666666.229933.peg.1366 CDS AJMF02000018.1 327289 325976 -1 - 1314 Cell envelope opacity-associated protein A - none -
fig|6666666.229933.peg.1367 CDS AJMF02000018.1 328492 327461 -1 - 1032 Lysyl-lysine 2,3-aminomutase Translation elongation factor P lysylation
fig|6666666.229933.peg.1368 CDS AJMF02000018.1 328557 329078 3 + 522 Translation elongation factor P Translation elongation factor P lysylation;
Translation elongation factors bacterial
fig|6666666.229933.peg.1369 CDS AJMF02000018.1 329408 330784 2 + 1377 Tryptophanase (EC 4.1.99.1) - none -
fig|6666666.229933.peg.1370 CDS AJMF02000018.1 330946 332160 1 + 1215 Tyrosine-specific transport protein - none -
fig|6666666.229933.peg.1371 CDS AJMF02000018.1 332903 332226 -2 - 678 YheO-like PAS domain - none -
fig|6666666.229933.peg.1372 CDS AJMF02000018.1 333472 332966 -1 - 507 Arabinose efflux permease - none -
fig|6666666.229933.peg.1373 CDS AJMF02000018.1 334196 333465 -2 - 732 UDP-2,3-diacylglucosamine diphosphatase (EC 3.6.1.54) KDO2-Lipid A biosynthesis;
Llipid A biosynthesis cluster
fig|6666666.229933.peg.1374 CDS AJMF02000018.1 334307 335050 2 + 744 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229933.peg.1375 CDS AJMF02000018.1 335058 336470 3 + 1413 Putative cell division protein precursor - none -
fig|6666666.229933.peg.1376 CDS AJMF02000018.1 337404 336541 -3 - 864 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229933.peg.1377 CDS AJMF02000018.1 338286 337546 -3 - 741 Pyruvate formate-lyase activating enzyme (EC 1.97.1.4) Fermentations: Mixed acid
fig|6666666.229933.peg.1378 CDS AJMF02000018.1 340743 338431 -3 - 2313 Pyruvate formate-lyase (EC 2.3.1.54) Butanol Biosynthesis;
Fermentations: Mixed acid
fig|6666666.229933.peg.1379 CDS AJMF02000018.1 341693 340842 -2 - 852 Formate efflux transporter (TC 2.A.44 family) Fermentations: Mixed acid
fig|6666666.229933.peg.1380 CDS AJMF02000018.1 342147 342359 3 + 213 Bis(5@1-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17) pyrimidine conversions
fig|6666666.229933.peg.1381 CDS AJMF02000018.1 342360 342713 3 + 354 Predicted periplasmic lipoprotein - none -
fig|6666666.229933.peg.1382 CDS AJMF02000018.1 342715 343761 1 + 1047 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) Murein Hydrolases;
Recycling of Peptidoglycan Amino Sugars
fig|6666666.229933.peg.1383 CDS AJMF02000018.1 343763 344905 2 + 1143 23S rRNA (Uracil-5-) -methyltransferase rumB (EC 2.1.1.-) RNA methylation
fig|6666666.229933.peg.1384 CDS AJMF02000018.1 345970 345005 -1 - 966 6-phosphofructokinase (EC 2.7.1.11) D-Tagatose and Galactitol Utilization;
Glycolysis and Gluconeogenesis
fig|6666666.229933.peg.1385 CDS AJMF02000018.1 346592 346032 -2 - 561 Cobalt-zinc-cadmium resistance protein Cobalt-zinc-cadmium resistance
fig|6666666.229933.peg.1386 CDS AJMF02000018.1 346954 346616 -1 - 339 Cobalt-zinc-cadmium resistance protein Cobalt-zinc-cadmium resistance
fig|6666666.229933.peg.1387 CDS AJMF02000018.1 347520 346954 -3 - 567 FIG00696199: hypothetical protein - none -
fig|6666666.229933.peg.1388 CDS AJMF02000018.1 348301 347522 -1 - 780 UPF0246 protein YaaA - none -
fig|6666666.229933.peg.1389 CDS AJMF02000018.1 348991 348323 -1 - 669 Uracil-DNA glycosylase, family 1 DNA Repair Base Excision;
Uracil-DNA glycosylase
fig|6666666.229933.peg.1390 CDS AJMF02000018.1 349277 349660 2 + 384 Pyruvate formate-lyase (EC 2.3.1.54) Butanol Biosynthesis;
Fermentations: Mixed acid
fig|6666666.229933.peg.1391 CDS AJMF02000018.1 349824 351620 3 + 1797 Translation elongation factor LepA Heat shock dnaK gene cluster extended;
Translation elongation factors bacterial;
Universal GTPases
fig|6666666.229933.peg.1392 CDS AJMF02000018.1 351631 352653 1 + 1023 Signal peptidase I (EC 3.4.21.89) CBSS-176299.4.peg.1292;
Signal peptidase
fig|6666666.229933.peg.1393 CDS AJMF02000018.1 352660 353340 1 + 681 Ribonuclease III (EC 3.1.26.3) CBSS-176299.4.peg.1292;
RNA processing and degradation, bacterial
fig|6666666.229933.peg.1394 CDS AJMF02000018.1 353337 354245 3 + 909 GTP-binding protein Era Bacterial Cell Division;
CBSS-176299.4.peg.1292;
Glycyl-tRNA synthetase containing cluster;
Universal GTPases;
tRNA modification Archaea
fig|6666666.229933.peg.1395 CDS AJMF02000018.1 355704 354349 -3 - 1356 GTPase and tRNA-U34 5-formylation enzyme TrmE Cell Division Subsystem including YidCD;
RNA modification and chromosome partitioning cluster;
RNA modification cluster;
Universal GTPases;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229933.peg.1396 CDS AJMF02000018.1 357421 355832 -1 - 1590 Inner membrane protein translocase component YidC, long form CTP synthase (EC 6.3.4.2) cluster;
Cell Division Subsystem including YidCD;
RNA modification cluster
fig|6666666.229933.peg.1397 CDS AJMF02000018.1 357726 357463 -3 - 264 Protein YidD Cell Division Subsystem including YidCD;
RNA modification cluster
fig|6666666.229933.peg.1398 CDS AJMF02000018.1 358016 357681 -2 - 336 Ribonuclease P protein component (EC 3.1.26.5) Cell Division Subsystem including YidCD;
RNA modification cluster;
tRNA processing
fig|6666666.229933.peg.1399 CDS AJMF02000018.1 358196 358062 -2 - 135 LSU ribosomal protein L34p Cell Division Subsystem including YidCD;
RNA modification cluster;
Ribosome LSU bacterial
fig|6666666.229933.peg.1400 CDS AJMF02000018.1 358614 359975 3 + 1362 Chromosomal replication initiator protein DnaA Cell Division Subsystem including YidCD;
DNA replication cluster 1
fig|6666666.229933.peg.1401 CDS AJMF02000018.1 359983 361086 1 + 1104 DNA polymerase III beta subunit (EC 2.7.7.7) Cell Division Subsystem including YidCD;
DNA replication cluster 1
fig|6666666.229933.peg.1402 CDS AJMF02000018.1 361090 362166 1 + 1077 DNA recombination and repair protein RecF Cell Division Subsystem including YidCD;
DNA repair, bacterial RecFOR pathway;
DNA replication cluster 1
fig|6666666.229933.peg.1403 CDS AJMF02000018.1 362968 362213 -1 - 756 Ubiquinone/menaquinone biosynthesis methyltransferase UbiE (EC 2.1.1.-) Menaquinone and Phylloquinone Biosynthesis;
Ubiquinone Biosynthesis
fig|6666666.229933.peg.1404 CDS AJMF02000018.1 363156 363731 3 + 576 Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1) Oxidative stress;
Protection from Reactive Oxygen Species
fig|6666666.229933.peg.1405 CDS AJMF02000020.1 986 87 -2 - 900 Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229933.peg.1406 CDS AJMF02000020.1 1149 2636 3 + 1488 Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229933.peg.1407 CDS AJMF02000020.1 2652 3680 3 + 1029 Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229933.peg.1408 CDS AJMF02000020.1 3686 4258 2 + 573 L-xylulose/3-keto-L-gulonate kinase (EC 2.7.1.-) L-ascorbate utilization (and related gene clusters)
fig|6666666.229933.peg.1409 CDS AJMF02000020.1 4420 5106 1 + 687 L-xylulose/3-keto-L-gulonate kinase (EC 2.7.1.-) L-ascorbate utilization (and related gene clusters)
fig|6666666.229933.peg.1410 CDS AJMF02000020.1 7495 5180 -1 - 2316 Transcription accessory protein (S1 RNA-binding domain) CBSS-243265.1.peg.198;
Cell division-ribosomal stress proteins cluster;
Transcription factors bacterial
fig|6666666.229933.peg.1411 CDS AJMF02000020.1 8599 7712 -1 - 888 RuBisCO operon transcriptional regulator CO2 uptake, carboxysome
fig|6666666.229933.peg.1412 CDS AJMF02000020.1 8709 10178 3 + 1470 Sodium-dependent transporter - none -
fig|6666666.229933.peg.1413 CDS AJMF02000020.1 10190 10789 2 + 600 Phosphoglycerate mutase (EC 5.4.2.1) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis;
Phosphoglycerate mutase protein family
fig|6666666.229933.peg.1414 CDS AJMF02000020.1 11313 11179 -3 - 135 Transcription accessory protein (S1 RNA-binding domain) CBSS-243265.1.peg.198;
Cell division-ribosomal stress proteins cluster;
Transcription factors bacterial
fig|6666666.229933.peg.1415 CDS AJMF02000020.1 11524 12006 1 + 483 Transcription elongation factor GreB CBSS-243265.1.peg.198;
Transcription factors bacterial
fig|6666666.229933.peg.1416 CDS AJMF02000020.1 12280 12089 -1 - 192 hypothetical protein - none -
fig|6666666.229933.peg.1417 CDS AJMF02000020.1 12882 12295 -3 - 588 DNA-directed RNA polymerase specialized sigma subunit, sigma24-like - none -
fig|6666666.229933.peg.1418 CDS AJMF02000020.1 13349 13068 -2 - 282 hypothetical protein - none -
fig|6666666.229933.peg.1419 CDS AJMF02000020.1 13611 14348 3 + 738 Putative preQ0 transporter Queuosine-Archaeosine Biosynthesis
fig|6666666.229933.peg.1420 CDS AJMF02000020.1 15666 14389 -3 - 1278 Uncharacterized protein EC-HemY, likely associated with heme metabolism based on gene clustering with hemC, hemD in Proteobacteria (unrelated to HemY-type PPO in GramPositives) - none -
fig|6666666.229933.peg.1421 CDS AJMF02000020.1 17064 15679 -3 - 1386 Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) Heme and Siroheme Biosynthesis
fig|6666666.229933.peg.1422 CDS AJMF02000020.1 17841 17095 -3 - 747 Uroporphyrinogen-III synthase (EC 4.2.1.75) Heme and Siroheme Biosynthesis
fig|6666666.229933.peg.1423 CDS AJMF02000020.1 18780 17854 -3 - 927 Porphobilinogen deaminase (EC 2.5.1.61) Heme and Siroheme Biosynthesis
fig|6666666.229933.peg.1424 CDS AJMF02000020.1 18936 21437 3 + 2502 Adenylate cyclase (EC 4.6.1.1) cAMP signaling in bacteria
fig|6666666.229933.peg.1425 CDS AJMF02000020.1 21447 22076 3 + 630 Nitrate/nitrite response regulator protein - none -
fig|6666666.229933.peg.1426 CDS AJMF02000020.1 22143 24002 3 + 1860 Uncharacterized protein YtfM precursor Cluster Ytf and putative sugar transporter;
Putative sugar ABC transporter (ytf cluster)
fig|6666666.229933.peg.1427 CDS AJMF02000020.1 24030 27908 3 + 3879 Uncharacterized protein YtfN Cluster Ytf and putative sugar transporter;
Putative sugar ABC transporter (ytf cluster)
fig|6666666.229933.peg.1428 CDS AJMF02000020.1 27911 29458 2 + 1548 Exopolyphosphatase (EC 3.6.1.11) Phosphate metabolism;
Polyphosphate
fig|6666666.229933.peg.1429 CDS AJMF02000020.1 31139 29523 -2 - 1617 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) CBSS-584.1.peg.3382;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229933.peg.1430 CDS AJMF02000020.1 31397 32041 2 + 645 converved hypothetical protein - none -
fig|6666666.229933.peg.1431 CDS AJMF02000020.1 32090 32980 2 + 891 NADH pyrophosphatase (EC 3.6.1.22) DNA uptake cluster;
Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229933.peg.1432 CDS AJMF02000020.1 32977 34041 1 + 1065 Uroporphyrinogen III decarboxylase (EC 4.1.1.37) Heme and Siroheme Biosynthesis
fig|6666666.229933.peg.1433 CDS AJMF02000020.1 34059 34649 3 + 591 FIG01200173: hypothetical protein - none -
fig|6666666.229933.peg.1434 CDS AJMF02000020.1 34816 35088 1 + 273 DNA-binding protein HU-alpha DNA structural proteins, bacterial;
DNA uptake cluster
fig|6666666.229933.peg.1435 CDS AJMF02000020.1 35214 36011 3 + 798 Transcriptional regulator of glmS gene, DeoR family - none -
fig|6666666.229933.peg.1436 CDS AJMF02000020.1 36066 37901 3 + 1836 Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) Sialic Acid Metabolism;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229933.peg.1437 CDS AJMF02000020.1 38695 38054 -1 - 642 FIG01220323: hypothetical protein - none -
fig|6666666.229933.peg.1438 CDS AJMF02000020.1 39469 39233 -1 - 237 FIG00699267: hypothetical protein - none -
fig|6666666.229933.peg.1439 CDS AJMF02000020.1 39970 39662 -1 - 309 filamentation induced by cAMP protein Fic-like protein - none -
fig|6666666.229933.peg.1440 CDS AJMF02000020.1 40262 40023 -2 - 240 hypothetical protein - none -
fig|6666666.229933.peg.1441 CDS AJMF02000020.1 40896 40255 -3 - 642 Chromosome (plasmid) partitioning protein ParA Bacterial Cell Division;
Bacterial Cytoskeleton;
Cell Division Subsystem including YidCD;
RNA modification and chromosome partitioning cluster
fig|6666666.229933.peg.1442 CDS AJMF02000020.1 41043 40912 -3 - 132 hypothetical protein - none -
fig|6666666.229933.peg.1443 CDS AJMF02000020.1 41304 41471 3 + 168 hypothetical protein - none -
fig|6666666.229933.peg.1444 CDS AJMF02000020.1 41468 41752 2 + 285 hypothetical protein - none -
fig|6666666.229933.peg.1445 CDS AJMF02000020.1 42586 42149 -1 - 438 hypothetical protein - none -
fig|6666666.229933.peg.1446 CDS AJMF02000020.1 44356 42620 -1 - 1737 Type IV secretion system protein VirD4 - none -
fig|6666666.229933.peg.1447 CDS AJMF02000020.1 45390 44359 -3 - 1032 ATPase provides energy for both assembly of type IV secretion complex and secretion of T-DNA complex (VirB11) - none -
fig|6666666.229933.peg.1448 CDS AJMF02000020.1 45633 45403 -3 - 231 Inner membrane protein of type IV secretion of T-DNA complex, TonB-like, VirB10 - none -
fig|6666666.229933.peg.1449 CDS AJMF02000020.1 46199 45627 -2 - 573 hypothetical protein - none -
fig|6666666.229933.peg.1450 CDS AJMF02000020.1 46791 46564 -3 - 228 hypothetical protein - none -
fig|6666666.229933.peg.1451 CDS AJMF02000020.1 47536 46805 -1 - 732 Minor pilin of type IV secretion complex, VirB5 - none -
fig|6666666.229933.peg.1452 CDS AJMF02000020.1 49214 47547 -2 - 1668 ATPase provides energy for both assembly of type IV secretion complex and secretion of T-DNA complex (VirB4) - none -
fig|6666666.229933.peg.1453 CDS AJMF02000020.1 49563 50456 3 + 894 Transcriptional regulator, LysR family - none -
fig|6666666.229933.peg.1454 CDS AJMF02000020.1 51298 50534 -1 - 765 putative tetracenomycin polyketide synthesis O-methyltransferase - none -
fig|6666666.229933.peg.1455 CDS AJMF02000020.1 53186 51687 -2 - 1500 ATPase component BioM of energizing module of biotin ECF transporter Biotin biosynthesis;
Biotin synthesis cluster;
ECF class transporters
fig|6666666.229933.peg.1456 CDS AJMF02000020.1 53312 53980 2 + 669 Uncharacterized protein conserved in bacteria - none -
fig|6666666.229933.peg.1457 CDS AJMF02000020.1 53983 54456 1 + 474 UPF0225 protein YchJ Broadly distributed proteins not in subsystems
fig|6666666.229933.peg.1458 CDS AJMF02000020.1 54453 55283 3 + 831 Ribonuclease BN (EC 3.1.-.-) - none -
fig|6666666.229933.peg.1459 CDS AJMF02000020.1 55280 55714 2 + 435 D-tyrosyl-tRNA(Tyr) deacylase (EC 3.6.1.n1) - none -
fig|6666666.229933.peg.1460 CDS AJMF02000020.1 55880 57088 2 + 1209 Sodium/glutamate symport protein - none -
fig|6666666.229933.peg.1461 CDS AJMF02000020.1 58532 57144 -2 - 1389 Copper sensory histidine kinase CpxA Orphan regulatory proteins
fig|6666666.229933.peg.1462 CDS AJMF02000020.1 59272 58577 -1 - 696 Copper-sensing two-component system response regulator CpxR Orphan regulatory proteins
fig|6666666.229933.peg.1463 CDS AJMF02000020.1 59727 59314 -3 - 414 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex Lipopolysaccharide assembly
fig|6666666.229933.peg.1464 CDS AJMF02000020.1 60818 59793 -2 - 1026 Nucleoid-associated protein NdpA CBSS-211586.1.peg.1979
fig|6666666.229933.peg.1465 CDS AJMF02000020.1 60945 61169 3 + 225 FIG002927: hypothetical protein CBSS-211586.1.peg.1979
fig|6666666.229933.peg.1466 CDS AJMF02000020.1 61174 62913 1 + 1740 FIG001881: hydrolase of alkaline phosphatase superfamily CBSS-211586.1.peg.1979
fig|6666666.229933.peg.1467 CDS AJMF02000020.1 63172 64161 1 + 990 Cytosine deaminase (EC 3.5.4.1) CBSS-326442.4.peg.1852;
Creatine and Creatinine Degradation;
pyrimidine conversions
fig|6666666.229933.peg.1468 CDS AJMF02000020.1 65125 64259 -1 - 867 Nucleoside triphosphate pyrophosphohydrolase MazG (EC 3.6.1.8) Nucleoside triphosphate pyrophosphohydrolase MazG
fig|6666666.229933.peg.1469 CDS AJMF02000020.1 65235 65660 3 + 426 Universal stress protein A Universal stress protein family
fig|6666666.229933.peg.1470 CDS AJMF02000020.1 65860 68484 1 + 2625 Alanyl-tRNA synthetase (EC 6.1.1.7) Cluster containing Alanyl-tRNA synthetase;
tRNA aminoacylation, Ala
fig|6666666.229933.peg.1471 CDS AJMF02000020.1 68607 68789 3 + 183 Carbon storage regulator Carbon Starvation;
Carbon storage regulator
fig|6666666.229933.peg.1472 CDS AJMF02000020.1 68821 70185 1 + 1365 Phosphomannomutase (EC 5.4.2.8) Mannose Metabolism
fig|6666666.229933.peg.1473 CDS AJMF02000020.1 70261 71148 1 + 888 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) - none -
fig|6666666.229933.peg.1474 CDS AJMF02000020.1 71303 71620 2 + 318 Methionine repressor MetJ Methionine Biosynthesis
fig|6666666.229933.peg.1475 CDS AJMF02000020.1 71708 71577 -2 - 132 hypothetical protein - none -
fig|6666666.229933.peg.1476 CDS AJMF02000020.1 71806 72441 1 + 636 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) Cluster containing Glutathione synthetase;
Heat shock dnaK gene cluster extended;
RNA methylation
fig|6666666.229933.peg.1477 CDS AJMF02000020.1 72458 73015 2 + 558 UPF0301 protein YqgE Cluster containing Glutathione synthetase
fig|6666666.229933.peg.1478 CDS AJMF02000020.1 73015 73434 1 + 420 Putative Holliday junction resolvase YggF Cluster containing Alanyl-tRNA synthetase;
Cluster containing Glutathione synthetase
fig|6666666.229933.peg.1479 CDS AJMF02000020.1 74840 73530 -2 - 1311 Enolase (EC 4.2.1.11) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis
fig|6666666.229933.peg.1480 CDS AJMF02000020.1 75025 74909 -1 - 117 hypothetical protein - none -
fig|6666666.229933.peg.1481 CDS AJMF02000020.1 76629 75478 -3 - 1152 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) CBSS-354.1.peg.876;
RNA methylation;
Riboflavin, FMN and FAD metabolism in plants;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229933.peg.1482 CDS AJMF02000020.1 77147 76890 -2 - 258 Probable exported or periplasmic protein in ApbE locus Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229933.peg.1483 CDS AJMF02000020.1 78314 77226 -2 - 1089 Thiamin biosynthesis lipoprotein ApbE - none -
fig|6666666.229933.peg.1484 CDS AJMF02000020.1 78460 78311 -1 - 150 hypothetical protein - none -
fig|6666666.229933.peg.1485 CDS AJMF02000020.1 79700 78465 -2 - 1236 Na(+)-translocating NADH-quinone reductase subunit F (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229933.peg.1486 CDS AJMF02000020.1 80308 79712 -1 - 597 Na(+)-translocating NADH-quinone reductase subunit E (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229933.peg.1487 CDS AJMF02000020.1 80941 80312 -1 - 630 Na(+)-translocating NADH-quinone reductase subunit D (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229933.peg.1488 CDS AJMF02000020.1 81726 80941 -3 - 786 Na(+)-translocating NADH-quinone reductase subunit C (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229933.peg.1489 CDS AJMF02000020.1 82954 81719 -1 - 1236 Na(+)-translocating NADH-quinone reductase subunit B (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229933.peg.1490 CDS AJMF02000020.1 84297 82957 -3 - 1341 Na(+)-translocating NADH-quinone reductase subunit A (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229933.peg.1491 CDS AJMF02000020.1 84379 84516 1 + 138 hypothetical protein - none -
fig|6666666.229933.peg.1492 CDS AJMF02000020.1 84643 84527 -1 - 117 hypothetical protein - none -
fig|6666666.229933.peg.1493 CDS AJMF02000020.1 84964 84653 -1 - 312 Cell division protein BolA Bacterial Cell Division;
CBSS-339671.5.peg.589
fig|6666666.229933.peg.1494 CDS AJMF02000020.1 85068 85661 3 + 594 Hypothetical lipoprotein YajG precursor CBSS-339671.5.peg.589
fig|6666666.229933.peg.1495 CDS AJMF02000020.1 85767 85642 -3 - 126 hypothetical protein - none -
fig|6666666.229933.peg.1496 CDS AJMF02000020.1 87241 86162 -1 - 1080 Membrane-bound lytic murein transglycosylase C precursor (EC 3.2.1.-) Murein Hydrolases
fig|6666666.229933.peg.1497 CDS AJMF02000020.1 87522 87244 -3 - 279 FIG001341: Probable Fe(2+)-trafficking protein YggX Heat shock dnaK gene cluster extended
fig|6666666.229933.peg.1498 CDS AJMF02000020.1 88690 87500 -1 - 1191 A/G-specific adenine glycosylase (EC 3.2.2.-) DNA repair, bacterial
fig|6666666.229933.peg.1499 CDS AJMF02000020.1 88856 89623 2 + 768 tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33) CBSS-83333.1.peg.2911;
RNA methylation;
tRNA modification Bacteria
fig|6666666.229933.peg.1500 CDS AJMF02000020.1 89726 89995 2 + 270 FIG002060: uncharacterized protein YggL CBSS-83333.1.peg.2911
fig|6666666.229933.peg.1501 CDS AJMF02000020.1 90214 91212 1 + 999 Ferric iron ABC transporter, iron-binding protein Iron acquisition in Streptococcus
fig|6666666.229933.peg.1502 CDS AJMF02000020.1 91293 92813 3 + 1521 Ferric iron ABC transporter, permease protein Iron acquisition in Streptococcus
fig|6666666.229933.peg.1503 CDS AJMF02000020.1 92829 93887 3 + 1059 Ferric iron ABC transporter, ATP-binding protein Iron acquisition in Streptococcus
fig|6666666.229933.peg.1504 CDS AJMF02000020.1 94648 93908 -1 - 741 tRNA-dihydrouridine synthase C (EC 1.-.-.-) Murein hydrolase regulation and cell death;
tRNA modification Bacteria
fig|6666666.229933.peg.1505 CDS AJMF02000020.1 94876 94652 -1 - 225 tRNA-dihydrouridine synthase C (EC 1.-.-.-) Murein hydrolase regulation and cell death;
tRNA modification Bacteria
fig|6666666.229933.peg.1506 CDS AJMF02000020.1 95755 94880 -1 - 876 DnaJ-like protein DjlA - none -
fig|6666666.229933.peg.1507 CDS AJMF02000020.1 96481 95837 -1 - 645 Orotate phosphoribosyltransferase (EC 2.4.2.10) De Novo Pyrimidine Synthesis
fig|6666666.229933.peg.1508 CDS AJMF02000020.1 97207 96491 -1 - 717 Ribonuclease PH (EC 2.7.7.56) Heat shock dnaK gene cluster extended;
tRNA processing
fig|6666666.229933.peg.1509 CDS AJMF02000020.1 97325 98188 2 + 864 Protein YicC CBSS-323097.3.peg.2594
fig|6666666.229933.peg.1510 CDS AJMF02000020.1 98216 99103 2 + 888 Folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress - none -
fig|6666666.229933.peg.1511 CDS AJMF02000020.1 99222 99611 3 + 390 Patatin-like phospholipase - none -
fig|6666666.229933.peg.1512 CDS AJMF02000020.1 99686 100408 2 + 723 SSU ribosomal protein S2p (SAe) CBSS-312309.3.peg.1965;
Ribosome SSU bacterial;
Ribosome recycling related cluster
fig|6666666.229933.peg.1513 CDS AJMF02000020.1 100563 101411 3 + 849 Translation elongation factor Ts CBSS-312309.3.peg.1965;
Ribosome recycling related cluster;
Translation elongation factors bacterial
fig|6666666.229933.peg.1514 CDS AJMF02000020.1 101708 102394 2 + 687 DNA recombination and repair protein RecO CBSS-176299.4.peg.1292;
DNA repair, bacterial RecFOR pathway;
Glycyl-tRNA synthetase containing cluster
fig|6666666.229933.peg.1515 CDS AJMF02000020.1 102396 103712 3 + 1317 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) RNA methylation
fig|6666666.229933.peg.1516 CDS AJMF02000020.1 103722 105953 3 + 2232 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I CBSS-176299.4.peg.1292;
Stringent Response, (p)ppGpp metabolism
fig|6666666.229933.peg.1517 CDS AJMF02000020.1 105978 106334 3 + 357 Diacylglycerol kinase (EC 2.7.1.107) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Riboflavin synthesis cluster
fig|6666666.229933.peg.1518 CDS AJMF02000021.1 599 192 -2 - 408 Two-component system response regulator QseB Orphan regulatory proteins
fig|6666666.229933.peg.1519 CDS AJMF02000021.1 1153 737 -1 - 417 Protein ygiW precursor - none -
fig|6666666.229933.peg.1520 CDS AJMF02000021.1 1278 1412 3 + 135 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229933.peg.1521 CDS AJMF02000021.1 1526 2443 2 + 918 formate dehydrogenase formation protein FdhE Formate hydrogenase
fig|6666666.229933.peg.1522 CDS AJMF02000021.1 4490 2517 -2 - 1974 2@1,3@1-cyclic-nucleotide 2@1-phosphodiesterase (EC 3.1.4.16) Purine conversions;
pyrimidine conversions
fig|6666666.229933.peg.1523 CDS AJMF02000021.1 4467 4649 3 + 183 hypothetical protein - none -
fig|6666666.229933.peg.1524 CDS AJMF02000021.1 4722 5621 3 + 900 Iron compound ABC uptake transporter substrate-binding protein PiuA - none -
fig|6666666.229933.peg.1525 CDS AJMF02000021.1 5681 6646 2 + 966 Ferric anguibactin transport system permease protein fatD - none -
fig|6666666.229933.peg.1526 CDS AJMF02000021.1 6654 7577 3 + 924 Ferric vibriobactin, enterobactin transport system, permease protein VctG (TC 3.A.1.14.6) - none -
fig|6666666.229933.peg.1527 CDS AJMF02000021.1 7589 8347 2 + 759 Iron(III) dicitrate transport ATP-binding protein FecE (TC 3.A.1.14.1) - none -
fig|6666666.229933.peg.1528 CDS AJMF02000021.1 9987 8455 -3 - 1533 Cell wall endopeptidase, family M23/M37 Glutaredoxins
fig|6666666.229933.peg.1529 CDS AJMF02000021.1 10176 10949 3 + 774 Zinc ABC transporter, ATP-binding protein ZnuC - none -
fig|6666666.229933.peg.1530 CDS AJMF02000021.1 10961 11746 2 + 786 Zinc ABC transporter, inner membrane permease protein ZnuB - none -
fig|6666666.229933.peg.1531 CDS AJMF02000021.1 13508 12141 -2 - 1368 sodium-dependent transporter - none -
fig|6666666.229933.peg.1532 CDS AJMF02000021.1 14168 13533 -2 - 636 Endonuclease III (EC 4.2.99.18) DNA Repair Base Excision
fig|6666666.229933.peg.1533 CDS AJMF02000021.1 15100 14315 -1 - 786 Electron transport complex protein RnfE Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229933.peg.1534 CDS AJMF02000021.1 15713 15093 -2 - 621 Electron transport complex protein RnfG Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229933.peg.1535 CDS AJMF02000021.1 16799 15720 -2 - 1080 Electron transport complex protein RnfD Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229933.peg.1536 CDS AJMF02000021.1 18762 16810 -3 - 1953 Electron transport complex protein RnfC Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229933.peg.1537 CDS AJMF02000021.1 19353 18763 -3 - 591 Electron transport complex protein RnfB Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229933.peg.1538 CDS AJMF02000021.1 19934 19353 -2 - 582 Electron transport complex protein RnfA Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229933.peg.1539 CDS AJMF02000021.1 21012 20125 -3 - 888 Cell division inhibitor CBSS-83333.1.peg.946;
Persister Cells
fig|6666666.229933.peg.1540 CDS AJMF02000021.1 21503 21036 -2 - 468 Arginine pathway regulatory protein ArgR, repressor of arg regulon Arginine Deiminase Pathway;
Arginine and Ornithine Degradation
fig|6666666.229933.peg.1541 CDS AJMF02000021.1 21759 22694 3 + 936 Malate dehydrogenase (EC 1.1.1.37) - none -
fig|6666666.229933.peg.1542 CDS AJMF02000021.1 23590 22850 -1 - 741 FIG00698611: hypothetical protein - none -
fig|6666666.229933.peg.1543 CDS AJMF02000021.1 24977 23958 -2 - 1020 Branched-chain amino acid aminotransferase (EC 2.6.1.42) Alanine biosynthesis;
Pyruvate Alanine Serine Interconversions
fig|6666666.229933.peg.1544 CDS AJMF02000021.1 25439 26344 2 + 906 Glycine cleavage system transcriptional activator GcvA LysR-family proteins in Escherichia coli;
Orphan regulatory proteins
fig|6666666.229933.peg.1545 CDS AJMF02000021.1 26364 27425 3 + 1062 LSU rRNA 2@1-O-methyl-C2498 methyltransferase RlmM RNA methylation
fig|6666666.229933.peg.1546 CDS AJMF02000021.1 27542 27994 2 + 453 Ribonucleotide reductase transcriptional regulator NrdR Ribonucleotide reduction
fig|6666666.229933.peg.1547 CDS AJMF02000021.1 27994 29118 1 + 1125 Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster;
Riboflavin synthesis cluster
fig|6666666.229933.peg.1548 CDS AJMF02000021.1 29127 30155 3 + 1029 Outer membrane stress sensor protease DegS Periplasmic Stress Response;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229933.peg.1549 CDS AJMF02000021.1 30164 30760 2 + 597 Nucleotidase YfbR, HD superfamily Housecleaning nucleoside triphosphate pyrophosphatases
fig|6666666.229933.peg.1550 CDS AJMF02000021.1 32170 30827 -1 - 1344 Arsenic efflux pump protein Arsenic resistance
fig|6666666.229933.peg.1551 CDS AJMF02000021.1 33170 32391 -2 - 780 DNA-binding domain of ModE / Molybdate-binding domain of ModE Molybdenum cofactor biosynthesis;
Molybdenum cofactor biosynthesis
fig|6666666.229933.peg.1552 CDS AJMF02000021.1 33397 34161 1 + 765 Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229933.peg.1553 CDS AJMF02000021.1 34240 34968 1 + 729 Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229933.peg.1554 CDS AJMF02000021.1 34955 36016 2 + 1062 Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229933.peg.1555 CDS AJMF02000021.1 37651 36161 -1 - 1491 Cytosol aminopeptidase PepA (EC 3.4.11.1) Aminopeptidases (EC 3.4.11.-);
Dehydrogenase complexes
fig|6666666.229933.peg.1556 CDS AJMF02000021.1 37788 38906 3 + 1119 FIG000988: Predicted permease - none -
fig|6666666.229933.peg.1557 CDS AJMF02000021.1 38911 39978 1 + 1068 FIG000906: Predicted Permease - none -
fig|6666666.229933.peg.1558 CDS AJMF02000021.1 40153 41037 1 + 885 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) 5-FCL-like protein;
Methionine Biosynthesis;
One-carbon metabolism by tetrahydropterines
fig|6666666.229933.peg.1559 CDS AJMF02000021.1 41187 42002 3 + 816 Shikimate 5-dehydrogenase I gamma (EC 1.1.1.25) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229933.peg.1560 CDS AJMF02000021.1 43946 43794 -2 - 153 hypothetical protein - none -
fig|6666666.229933.peg.1561 CDS AJMF02000021.1 44925 43990 -3 - 936 [NiFe] hydrogenase metallocenter assembly protein HypE G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229933.peg.1562 CDS AJMF02000021.1 46037 44925 -2 - 1113 [NiFe] hydrogenase metallocenter assembly protein HypD G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229933.peg.1563 CDS AJMF02000021.1 46873 46064 -1 - 810 [NiFe] hydrogenase nickel incorporation-associated protein HypB G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229933.peg.1564 CDS AJMF02000021.1 47575 46952 -1 - 624 ATPase component NikO of energizing module of nickel ECF transporter ECF class transporters;
Transport of Nickel and Cobalt
fig|6666666.229933.peg.1565 CDS AJMF02000021.1 48237 47572 -3 - 666 Transmembrane component NikQ of energizing module of nickel ECF transporter ECF class transporters;
Transport of Nickel and Cobalt
fig|6666666.229933.peg.1566 CDS AJMF02000021.1 48887 48234 -2 - 654 Substrate-specific component NikM of nickel ECF transporter ECF class transporters;
Transport of Nickel and Cobalt
fig|6666666.229933.peg.1567 CDS AJMF02000021.1 49138 48887 -1 - 252 Additional component NikL of nickel ECF transporter Transport of Nickel and Cobalt
fig|6666666.229933.peg.1568 CDS AJMF02000021.1 50094 49399 -3 - 696 Additional periplasmic component NikK of nickel ECF transporter Transport of Nickel and Cobalt
fig|6666666.229933.peg.1569 CDS AJMF02000021.1 50964 50272 -3 - 693 5@1-methylthioadenosine nucleosidase (EC 3.2.2.16) / S-adenosylhomocysteine nucleosidase (EC 3.2.2.9) Adenosyl nucleosidases;
Adenosyl nucleosidases;
Methionine Biosynthesis;
Methionine Degradation;
Polyamine Metabolism
fig|6666666.229933.peg.1570 CDS AJMF02000021.1 51628 50981 -1 - 648 Thiol-disulfide isomerase and thioredoxins - none -
fig|6666666.229933.peg.1571 CDS AJMF02000021.1 53382 51661 -3 - 1722 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) DNA Repair Base Excision;
DNA repair, bacterial RecFOR pathway
fig|6666666.229933.peg.1572 CDS AJMF02000021.1 54078 53395 -3 - 684 Thiol:disulfide interchange protein DsbC Periplasmic disulfide interchange
fig|6666666.229933.peg.1573 CDS AJMF02000021.1 54162 54323 3 + 162 hypothetical protein - none -
fig|6666666.229933.peg.1574 CDS AJMF02000021.1 54442 55344 1 + 903 Peptide chain release factor 2; programmed frameshift-containing Programmed frameshift;
Programmed frameshift;
Translation termination factors bacterial
fig|6666666.229933.peg.1575 CDS AJMF02000021.1 55401 56909 3 + 1509 Lysyl-tRNA synthetase (class II) (EC 6.1.1.6) tRNA aminoacylation, Lys
fig|6666666.229933.peg.1576 CDS AJMF02000021.1 57099 57524 3 + 426 6-carboxytetrahydropterin synthase (EC 4.1.2.50) @ Queuosine biosynthesis QueD, PTPS-I Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229933.peg.1577 CDS AJMF02000021.1 57485 58159 2 + 675 Queuosine Biosynthesis QueE Radical SAM Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229933.peg.1578 CDS AJMF02000021.1 58282 59139 1 + 858 FIG137478: Hypothetical protein YbgI - none -
fig|6666666.229933.peg.1579 CDS AJMF02000021.1 59231 60019 2 + 789 Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9) Fatty Acid Biosynthesis FASII
fig|6666666.229933.peg.1580 CDS AJMF02000021.1 60092 62071 2 + 1980 Exoribonuclease II (EC 3.1.13.1) RNA processing and degradation, bacterial
fig|6666666.229933.peg.1581 CDS AJMF02000021.1 62672 62190 -2 - 483 Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1) Oxidative stress;
Oxidative stress;
Oxidative stress
fig|6666666.229933.peg.1582 CDS AJMF02000021.1 62881 64041 1 + 1161 Membrane fusion component of tripartite multidrug resistance system Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria
fig|6666666.229933.peg.1583 CDS AJMF02000021.1 64054 65568 1 + 1515 Inner membrane component of tripartite multidrug resistance system Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria
fig|6666666.229933.peg.1584 CDS AJMF02000021.1 65712 65993 3 + 282 HipB protein Persister Cells
fig|6666666.229933.peg.1585 CDS AJMF02000021.1 66043 66381 1 + 339 HipA protein Persister Cells
fig|6666666.229933.peg.1586 CDS AJMF02000021.1 66375 66491 3 + 117 HipA protein Persister Cells
fig|6666666.229933.peg.1587 CDS AJMF02000021.1 66491 66613 2 + 123 HipA protein Persister Cells
fig|6666666.229933.peg.1588 CDS AJMF02000021.1 67503 66610 -3 - 894 hypothetical protein - none -
fig|6666666.229933.peg.1589 CDS AJMF02000022.1 482 93 -2 - 390 LSU ribosomal protein L17p Ribosome LSU bacterial
fig|6666666.229933.peg.1590 CDS AJMF02000022.1 1513 524 -1 - 990 DNA-directed RNA polymerase alpha subunit (EC 2.7.7.6) RNA polymerase bacterial
fig|6666666.229933.peg.1591 CDS AJMF02000022.1 2150 1542 -2 - 609 SSU ribosomal protein S4p (S9e) Ribosome SSU bacterial
fig|6666666.229933.peg.1592 CDS AJMF02000022.1 2581 2192 -1 - 390 SSU ribosomal protein S11p (S14e) Ribosome SSU bacterial
fig|6666666.229933.peg.1593 CDS AJMF02000022.1 2953 2597 -1 - 357 SSU ribosomal protein S13p (S18e) Ribosome SSU bacterial
fig|6666666.229933.peg.1594 CDS AJMF02000022.1 4559 3234 -2 - 1326 Preprotein translocase secY subunit (TC 3.A.5.1.1) - none -
fig|6666666.229933.peg.1595 CDS AJMF02000022.1 4997 4563 -2 - 435 LSU ribosomal protein L15p (L27Ae) Ribosome LSU bacterial
fig|6666666.229933.peg.1596 CDS AJMF02000022.1 5687 5187 -2 - 501 SSU ribosomal protein S5p (S2e) Ribosome SSU bacterial
fig|6666666.229933.peg.1597 CDS AJMF02000022.1 6056 5703 -2 - 354 LSU ribosomal protein L18p (L5e) Ribosome LSU bacterial
fig|6666666.229933.peg.1598 CDS AJMF02000022.1 6603 6070 -3 - 534 LSU ribosomal protein L6p (L9e) Ribosome LSU bacterial
fig|6666666.229933.peg.1599 CDS AJMF02000022.1 7011 6619 -3 - 393 SSU ribosomal protein S8p (S15Ae) Ribosome SSU bacterial
fig|6666666.229933.peg.1600 CDS AJMF02000022.1 7353 7048 -3 - 306 SSU ribosomal protein S14p (S29e) @ SSU ribosomal protein S14p (S29e), zinc-independent Ribosome SSU bacterial;
Ribosome SSU bacterial
fig|6666666.229933.peg.1601 CDS AJMF02000022.1 7794 7366 -3 - 429 LSU ribosomal protein L5p (L11e) Ribosome LSU bacterial
fig|6666666.229933.peg.1602 CDS AJMF02000022.1 8234 7923 -2 - 312 LSU ribosomal protein L24p (L26e) Ribosome LSU bacterial
fig|6666666.229933.peg.1603 CDS AJMF02000022.1 8616 8245 -3 - 372 LSU ribosomal protein L14p (L23e) Ribosome LSU bacterial
fig|6666666.229933.peg.1604 CDS AJMF02000024.1 1088 1201 2 + 114 hypothetical protein - none -
fig|6666666.229933.peg.1605 CDS AJMF02000024.1 3051 1198 -3 - 1854 GTP-binding protein TypA/BipA Universal GTPases
fig|6666666.229933.peg.1606 CDS AJMF02000024.1 3438 4847 3 + 1410 Glutamine synthetase type I (EC 6.3.1.2) Ammonia assimilation;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Glutamine synthetases;
Peptidoglycan Biosynthesis
fig|6666666.229933.peg.1607 CDS AJMF02000025.1 29 148 2 + 120 FIG00697497: hypothetical protein - none -
fig|6666666.229933.peg.1608 CDS AJMF02000025.1 441 184 -3 - 258 FIG00699498: hypothetical protein - none -
fig|6666666.229933.peg.1609 CDS AJMF02000025.1 1276 2262 1 + 987 Fructose repressor FruR, LacI family Fructose utilization
fig|6666666.229933.peg.1610 CDS AJMF02000025.1 2959 2246 -1 - 714 SanA protein - none -
fig|6666666.229933.peg.1611 CDS AJMF02000025.1 3152 4255 2 + 1104 Homoserine O-acetyltransferase (EC 2.3.1.31) Methionine Biosynthesis
fig|6666666.229933.peg.1612 CDS AJMF02000025.1 4561 5559 1 + 999 Purine nucleotide synthesis repressor Purine nucleotide synthesis regulator
fig|6666666.229933.peg.1613 CDS AJMF02000025.1 5862 5996 3 + 135 hypothetical protein - none -
fig|6666666.229933.peg.1614 CDS AJMF02000025.1 6030 6350 3 + 321 putative cytoplasmic protein - none -
fig|6666666.229933.peg.1615 CDS AJMF02000025.1 7292 6465 -2 - 828 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229933.peg.1616 CDS AJMF02000025.1 8348 7377 -2 - 972 Cys regulon transcriptional activator CysB Cysteine Biosynthesis;
LysR-family proteins in Escherichia coli
fig|6666666.229933.peg.1617 CDS AJMF02000025.1 8909 8379 -2 - 531 Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70) RNA pseudouridine syntheses
fig|6666666.229933.peg.1618 CDS AJMF02000025.1 20024 19401 -2 - 624 Hypothetical YciO protein, TsaC/YrdC paralog YrdC-YciO-Sua5 protein family
fig|6666666.229933.peg.1619 CDS AJMF02000025.1 20916 20098 -3 - 819 Chorismate mutase I (EC 5.4.99.5) / Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) Chorismate Synthesis;
Chorismate Synthesis;
Phenylalanine and Tyrosine Branches from Chorismate;
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229933.peg.1620 CDS AJMF02000025.1 21035 20871 -2 - 165 Chorismate mutase I (EC 5.4.99.5) / Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) Chorismate Synthesis;
Chorismate Synthesis;
Phenylalanine and Tyrosine Branches from Chorismate;
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229933.peg.1621 CDS AJMF02000025.1 21220 21014 -1 - 207 Chorismate mutase I (EC 5.4.99.5) / Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) Chorismate Synthesis;
Chorismate Synthesis;
Phenylalanine and Tyrosine Branches from Chorismate;
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229933.peg.1622 CDS AJMF02000025.1 23141 21261 -2 - 1881 Signal peptide peptidase SppA (EC 3.4.21.-) - none -
fig|6666666.229933.peg.1623 CDS AJMF02000025.1 23265 23819 3 + 555 FIG002003: Protein YdjA - none -
fig|6666666.229933.peg.1624 CDS AJMF02000025.1 25728 24247 -3 - 1482 Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4) 5-FCL-like protein;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229933.peg.1625 CDS AJMF02000025.1 27435 25765 -3 - 1671 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) 5-FCL-like protein;
Dehydrogenase complexes;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229933.peg.1626 CDS AJMF02000025.1 30121 27464 -1 - 2658 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) 5-FCL-like protein;
Dehydrogenase complexes;
Methionine Degradation;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229933.peg.1627 CDS AJMF02000025.1 30499 31374 1 + 876 Tellurite resistance protein TehB Tellurite resistance: Chromosomal determinants
fig|6666666.229933.peg.1628 CDS AJMF02000025.1 34241 31527 -2 - 2715 Transcriptional activator of maltose regulon, MalT Maltose and Maltodextrin Utilization;
Maltose utilization cluster
fig|6666666.229933.peg.1629 CDS AJMF02000025.1 34414 36804 1 + 2391 Maltodextrin phosphorylase (EC 2.4.1.1) Glycogen metabolism;
Maltose and Maltodextrin Utilization;
Maltose utilization cluster
fig|6666666.229933.peg.1630 CDS AJMF02000025.1 36914 38989 2 + 2076 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) Glycogen metabolism;
Glycogen metabolism cluster;
Maltose and Maltodextrin Utilization;
Maltose utilization cluster
fig|6666666.229933.peg.1631 CDS AJMF02000025.1 39011 39136 2 + 126 hypothetical protein - none -
fig|6666666.229933.peg.1632 CDS AJMF02000025.1 39675 39133 -3 - 543 Colicin V production protein - none -
fig|6666666.229933.peg.1633 CDS AJMF02000025.1 40297 39854 -1 - 444 FIG00638298: membrane protein YfbV - none -
fig|6666666.229933.peg.1634 CDS AJMF02000025.1 40565 41767 2 + 1203 Acetate kinase (EC 2.7.2.1) Fermentations: Lactate;
Fermentations: Mixed acid;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229933.peg.1635 CDS AJMF02000025.1 41837 43972 2 + 2136 Phosphate acetyltransferase (EC 2.3.1.8) Fermentations: Lactate;
Fermentations: Mixed acid;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229933.peg.1636 CDS AJMF02000025.1 44319 44453 3 + 135 hypothetical protein - none -
fig|6666666.229933.peg.1637 CDS AJMF02000025.1 44534 44680 2 + 147 hypothetical protein - none -
fig|6666666.229933.peg.1638 CDS AJMF02000025.1 45251 44751 -2 - 501 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) Folate Biosynthesis;
Folate biosynthesis cluster
fig|6666666.229933.peg.1639 CDS AJMF02000025.1 46710 45244 -3 - 1467 Poly(A) polymerase (EC 2.7.7.19) Polyadenylation bacterial
fig|6666666.229933.peg.1640 CDS AJMF02000025.1 47264 46827 -2 - 438 C4-type zinc finger protein, DksA/TraR family - none -
fig|6666666.229933.peg.1641 CDS AJMF02000025.1 47757 49991 3 + 2235 DNA internalization-related competence protein ComEC/Rec2 KDO2-Lipid A biosynthesis;
KDO2-Lipid A biosynthesis cluster 2
fig|6666666.229933.peg.1642 CDS AJMF02000025.1 50038 51786 1 + 1749 Lipid A export ATP-binding/permease protein MsbA (EC 3.6.3.25) KDO2-Lipid A biosynthesis;
KDO2-Lipid A biosynthesis cluster 2
fig|6666666.229933.peg.1643 CDS AJMF02000025.1 51805 52779 1 + 975 Tetraacyldisaccharide 4@1-kinase (EC 2.7.1.130) KDO2-Lipid A biosynthesis;
KDO2-Lipid A biosynthesis cluster 2
fig|6666666.229933.peg.1644 CDS AJMF02000025.1 52801 52980 1 + 180 FIG002473: Protein YcaR in KDO2-Lipid A biosynthesis cluster Broadly distributed proteins not in subsystems;
KDO2-Lipid A biosynthesis cluster 2
fig|6666666.229933.peg.1645 CDS AJMF02000025.1 52982 53755 2 + 774 3-deoxy-manno-octulosonate cytidylyltransferase (EC 2.7.7.38) KDO2-Lipid A biosynthesis;
KDO2-Lipid A biosynthesis cluster 2
fig|6666666.229933.peg.1646 CDS AJMF02000025.1 53894 55723 2 + 1830 Excinuclease ABC subunit C DNA repair, UvrABC system
fig|6666666.229933.peg.1647 CDS AJMF02000025.1 55919 56059 2 + 141 Autoinducer 2 (AI-2) ABC transport system, periplasmic AI-2 binding protein LsrB Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229933.peg.1648 CDS AJMF02000025.1 57132 56110 -3 - 1023 Possible ABC transporter, periplasmic substrate X binding protein precursor ABC transporter of unknown substrate X
fig|6666666.229933.peg.1649 CDS AJMF02000025.1 57883 57104 -1 - 780 Putative ABC transporter of substrate X, permease subunit II ABC transporter of unknown substrate X
fig|6666666.229933.peg.1650 CDS AJMF02000025.1 58749 57880 -3 - 870 Putative ABC transporter of substrate X, permease subunit I ABC transporter of unknown substrate X
fig|6666666.229933.peg.1651 CDS AJMF02000025.1 59699 58746 -2 - 954 Putative ABC transporter of substrate X, ATP-binding subunit ABC transporter of unknown substrate X
fig|6666666.229933.peg.1652 CDS AJMF02000025.1 61163 60054 -2 - 1110 Selenide,water dikinase (EC 2.7.9.3) Selenocysteine metabolism;
tRNA modification Bacteria
fig|6666666.229933.peg.1653 CDS AJMF02000025.1 62523 61675 -3 - 849 filamentation induced by cAMP protein Fic-like protein - none -
fig|6666666.229933.peg.1654 CDS AJMF02000025.1 62991 63152 3 + 162 hypothetical protein - none -
fig|6666666.229933.peg.1655 CDS AJMF02000025.1 63278 63123 -2 - 156 hypothetical protein - none -
fig|6666666.229933.peg.1656 CDS AJMF02000025.1 63519 63367 -3 - 153 hypothetical protein - none -
fig|6666666.229933.peg.1657 CDS AJMF02000025.1 64960 63536 -1 - 1425 NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) Phosphate metabolism
fig|6666666.229933.peg.1658 CDS AJMF02000025.1 66506 64971 -2 - 1536 NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2) Phosphate metabolism
fig|6666666.229933.peg.1659 CDS AJMF02000025.1 66799 67524 1 + 726 Sugar/maltose fermentation stimulation protein homolog Fermentations: Mixed acid
fig|6666666.229933.peg.1660 CDS AJMF02000025.1 67772 68959 2 + 1188 Tyrosyl-tRNA synthetase (EC 6.1.1.1) tRNA aminoacylation, Tyr
fig|6666666.229933.peg.1661 CDS AJMF02000025.1 69086 69697 2 + 612 hypothetical protein - none -
fig|6666666.229933.peg.1662 CDS AJMF02000025.1 69790 69942 1 + 153 hypothetical protein - none -
fig|6666666.229933.peg.1663 CDS AJMF02000025.1 70901 69984 -2 - 918 tRNA pseudouridine synthase B (EC 4.2.1.70) CBSS-138119.3.peg.2719;
RNA pseudouridine syntheses;
Riboflavin, FMN and FAD metabolism in plants;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229933.peg.1664 CDS AJMF02000025.1 71287 70901 -1 - 387 Ribosome-binding factor A CBSS-138119.3.peg.2719;
NusA-TFII Cluster;
Translation initiation factors bacterial
fig|6666666.229933.peg.1665 CDS AJMF02000025.1 72720 71374 -3 - 1347 helicase domain protein - none -
fig|6666666.229933.peg.1666 CDS AJMF02000025.1 74966 72750 -2 - 2217 Type III restriction-modification system methylation subunit (EC 2.1.1.72) Restriction-Modification System
fig|6666666.229933.peg.1667 CDS AJMF02000025.1 76276 75266 -1 - 1011 Translation initiation factor 2 CBSS-138119.3.peg.2719;
NusA-TFII Cluster;
Translation initiation factors bacterial;
Universal GTPases
fig|6666666.229933.peg.1668 CDS AJMF02000025.1 79250 77754 -2 - 1497 Transcription termination protein NusA NusA-TFII Cluster;
Transcription factors bacterial
fig|6666666.229933.peg.1669 CDS AJMF02000025.1 79729 79274 -1 - 456 FIG000325: clustered with transcription termination protein NusA NusA-TFII Cluster;
Transcription factors bacterial
fig|6666666.229933.peg.1670 CDS AJMF02000025.1 80168 81520 2 + 1353 C4-dicarboxylate transporter DcuC (TC 2.A.61.1.1) Citrate Metabolism, Transport, and Regulation
fig|6666666.229933.peg.1671 CDS AJMF02000025.1 81550 81735 1 + 186 hypothetical protein - none -
fig|6666666.229933.peg.1672 CDS AJMF02000025.1 81775 82047 1 + 273 DNA-damage-inducible protein J DNA repair, bacterial;
Toxin-antitoxin replicon stabilization systems
fig|6666666.229933.peg.1673 CDS AJMF02000025.1 82059 82325 3 + 267 YafQ toxin protein Toxin-antitoxin replicon stabilization systems
fig|6666666.229933.peg.1674 CDS AJMF02000025.1 82357 83916 1 + 1560 GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2) Purine conversions
fig|6666666.229933.peg.1675 CDS AJMF02000025.1 84107 84922 2 + 816 Integrase - none -
fig|6666666.229933.peg.1676 CDS AJMF02000025.1 84912 85025 3 + 114 hypothetical protein - none -
fig|6666666.229933.peg.1677 CDS AJMF02000025.1 86401 85088 -1 - 1314 UPF0325 protein YaeH - none -
fig|6666666.229933.peg.1678 CDS AJMF02000025.1 86656 86838 1 + 183 hypothetical protein - none -
fig|6666666.229933.peg.1679 CDS AJMF02000025.1 86890 87309 1 + 420 hypothetical protein - none -
fig|6666666.229933.peg.1680 CDS AJMF02000025.1 87694 87335 -1 - 360 phage-related protein - none -
fig|6666666.229933.peg.1681 CDS AJMF02000025.1 87807 87691 -3 - 117 hypothetical protein - none -
fig|6666666.229933.peg.1682 CDS AJMF02000025.1 88540 88358 -1 - 183 putative minor head protein - none -
fig|6666666.229933.peg.1683 CDS AJMF02000025.1 89195 89860 2 + 666 putative prophage repressor CI - none -
fig|6666666.229933.peg.1684 CDS AJMF02000025.1 89951 90568 2 + 618 hypothetical protein - none -
fig|6666666.229933.peg.1685 CDS AJMF02000025.1 91163 91819 2 + 657 hypothetical protein - none -
fig|6666666.229933.peg.1686 CDS AJMF02000025.1 92133 91996 -3 - 138 hypothetical protein - none -
fig|6666666.229933.peg.1687 CDS AJMF02000025.1 92477 92343 -2 - 135 hypothetical protein - none -
fig|6666666.229933.peg.1688 CDS AJMF02000025.1 93864 92914 -3 - 951 hypothetical protein - none -
fig|6666666.229933.peg.1689 CDS AJMF02000025.1 95646 96599 3 + 954 Acetyl-coenzyme A carboxyl transferase alpha chain (EC 6.4.1.2) Fatty Acid Biosynthesis FASII
fig|6666666.229933.peg.1690 CDS AJMF02000025.1 96662 97519 2 + 858 Pyridoxal kinase (EC 2.7.1.35) Pyridoxin (Vitamin B6) Biosynthesis
fig|6666666.229933.peg.1691 CDS AJMF02000025.1 97563 98897 3 + 1335 tRNA(Ile)-lysidine synthetase (EC 6.3.4.19) Cell division-ribosomal stress proteins cluster;
Folate biosynthesis cluster;
tRNA modification Bacteria;
tRNA processing;
tRNAmodification position 34
fig|6666666.229933.peg.1692 CDS AJMF02000025.1 100256 98925 -2 - 1332 Guanine-hypoxanthine permease Purine Utilization
fig|6666666.229933.peg.1693 CDS AJMF02000025.1 100381 100229 -1 - 153 hypothetical protein - none -
fig|6666666.229933.peg.1694 CDS AJMF02000025.1 100767 100381 -3 - 387 Integral membrane protein - none -
fig|6666666.229933.peg.1695 CDS AJMF02000025.1 100961 101977 2 + 1017 UDP-glucose 4-epimerase (EC 5.1.3.2) Lactose and Galactose Uptake and Utilization;
Rhamnose containing glycans
fig|6666666.229933.peg.1696 CDS AJMF02000025.1 101983 102324 1 + 342 [NiFe] hydrogenase nickel incorporation protein HybF NiFe hydrogenase maturation
fig|6666666.229933.peg.1697 CDS AJMF02000025.1 102439 103620 1 + 1182 AmpG permease Recycling of Peptidoglycan Amino Acids
fig|6666666.229933.peg.1698 CDS AJMF02000025.1 103753 104397 1 + 645 Adenylate kinase (EC 2.7.4.3) Purine conversions
fig|6666666.229933.peg.1699 CDS AJMF02000025.1 106312 105134 -1 - 1179 N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family Chitin and N-acetylglucosamine utilization
fig|6666666.229933.peg.1700 CDS AJMF02000025.1 107723 106419 -2 - 1305 Glutamyl-tRNA reductase (EC 1.2.1.70) A Gammaproteobacteria Cluster Relating to Translation;
Heme and Siroheme Biosynthesis
fig|6666666.229933.peg.1701 CDS AJMF02000025.1 108609 107908 -3 - 702 Hydroxyacylglutathione hydrolase (EC 3.1.2.6) CBSS-228410.1.peg.134;
CBSS-342610.3.peg.1536;
Glutathione: Non-redox reactions;
Methylglyoxal Metabolism
fig|6666666.229933.peg.1702 CDS AJMF02000025.1 108630 109328 3 + 699 FIG005121: SAM-dependent methyltransferase (EC 2.1.1.-) CBSS-228410.1.peg.134;
CBSS-342610.3.peg.1536;
Glutathione: Non-redox reactions
fig|6666666.229933.peg.1703 CDS AJMF02000025.1 110240 109386 -2 - 855 PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69) Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism;
Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229933.peg.1704 CDS AJMF02000025.1 110878 110252 -1 - 627 PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69) Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism;
Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229933.peg.1705 CDS AJMF02000025.1 111405 111067 -3 - 339 FIG00904093: hypothetical protein - none -
fig|6666666.229933.peg.1706 CDS AJMF02000025.1 111581 112786 2 + 1206 Mannose-6-phosphate isomerase (EC 5.3.1.8) Mannose Metabolism
fig|6666666.229933.peg.1707 CDS AJMF02000025.1 112877 114640 2 + 1764 FIG00696060: hypothetical protein - none -
fig|6666666.229933.peg.1708 CDS AJMF02000025.1 114811 115221 1 + 411 probable membrane protein YPO3565 - none -
fig|6666666.229933.peg.1709 CDS AJMF02000025.1 115349 115179 -2 - 171 hypothetical protein - none -
fig|6666666.229933.peg.1710 CDS AJMF02000025.1 115412 116794 2 + 1383 Outer membrane stress sensor protease DegQ, serine protease Periplasmic Stress Response;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229933.peg.1711 CDS AJMF02000025.1 117896 116892 -2 - 1005 Biotin synthase (EC 2.8.1.6) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229933.peg.1712 CDS AJMF02000025.1 118444 117941 -1 - 504 Thiamin ABC transporter, ATPase component / Thiamine transport ATP-binding protein thiQ Thiamin biosynthesis
fig|6666666.229933.peg.1713 CDS AJMF02000025.1 120199 118571 -1 - 1629 Thiamin ABC transporter, transmembrane component Thiamin biosynthesis
fig|6666666.229933.peg.1714 CDS AJMF02000025.1 121212 120208 -3 - 1005 Thiamin ABC transporter, substrate-binding component Thiamin biosynthesis
fig|6666666.229933.peg.1715 CDS AJMF02000025.1 121634 121410 -2 - 225 Phosphomethylpyrimidine kinase (EC 2.7.4.7) 5-FCL-like protein;
Thiamin biosynthesis
fig|6666666.229933.peg.1716 CDS AJMF02000025.1 122559 122266 -3 - 294 CRISPR-associated protein Cas2 CRISPRs
fig|6666666.229933.peg.1717 CDS AJMF02000025.1 123270 122563 -3 - 708 CRISPR-associated protein Cas1 CRISPRs
fig|6666666.229933.peg.1718 CDS AJMF02000025.1 125348 123594 -2 - 1755 predicted ATP-dependent endonuclease, OLD family - none -
fig|6666666.229933.peg.1719 CDS AJMF02000025.1 125589 125338 -3 - 252 CRISPR-associated RecB family exonuclease Cas4 / CRISPR-associated protein Cas1 CRISPRs
fig|6666666.229933.peg.1720 CDS AJMF02000025.1 126015 125593 -3 - 423 CRISPR-associated RecB family exonuclease Cas4 / CRISPR-associated protein Cas1 CRISPRs
fig|6666666.229933.peg.1721 CDS AJMF02000025.1 126486 126259 -3 - 228 CRISPR-associated protein, Csd2/Csh2 family - none -
fig|6666666.229933.peg.1722 CDS AJMF02000025.1 127706 126513 -2 - 1194 CRISPR-associated protein, Csd1 family CRISPRs
fig|6666666.229933.peg.1723 CDS AJMF02000025.1 128386 127703 -1 - 684 CRISPR-associated protein, Cas5d family CRISPRs
fig|6666666.229933.peg.1724 CDS AJMF02000025.1 130910 128412 -2 - 2499 CRISPR-associated protein Cas3@1@1 CRISPRs
fig|6666666.229933.peg.1725 CDS AJMF02000025.1 131332 134265 1 + 2934 Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42) Ammonia assimilation;
CBSS-316057.3.peg.3521
fig|6666666.229933.peg.1726 CDS AJMF02000025.1 134600 134301 -2 - 300 Putative transcriptional regulator - none -
fig|6666666.229933.peg.1727 CDS AJMF02000025.1 134947 134597 -1 - 351 YPPCP.09C homologue - none -
fig|6666666.229933.peg.1728 CDS AJMF02000025.1 136718 135135 -2 - 1584 Peptide chain release factor 3 Translation termination factors bacterial
fig|6666666.229933.peg.1729 CDS AJMF02000025.1 137075 137902 2 + 828 Nucleoside-diphosphate-sugar epimerases - none -
fig|6666666.229933.peg.1730 CDS AJMF02000025.1 137997 139334 3 + 1338 Argininosuccinate synthase (EC 6.3.4.5) - none -
fig|6666666.229933.peg.1731 CDS AJMF02000025.1 139524 139769 3 + 246 FIG00696862: hypothetical protein - none -
fig|6666666.229933.peg.1732 CDS AJMF02000025.1 140002 141771 1 + 1770 Gamma-glutamyltranspeptidase (EC 2.3.2.2) Glutathione: Biosynthesis and gamma-glutamyl cycle
fig|6666666.229933.peg.1733 CDS AJMF02000025.1 143250 141856 -3 - 1395 Sensory histidine kinase QseC Orphan regulatory proteins
fig|6666666.229933.peg.1734 CDS AJMF02000025.1 143338 143219 -1 - 120 Two-component system response regulator QseB Orphan regulatory proteins
fig|6666666.229933.peg.1735 CDS AJMF02000025.1 143939 143823 -2 - 117 FIG00697497: hypothetical protein - none -
fig|6666666.229933.peg.1736 CDS AJMF02000026.1 613 56 -1 - 558 D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase (EC 3.1.1.-) Capsular heptose biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.229933.peg.1737 CDS AJMF02000026.1 810 1847 3 + 1038 Methionine ABC transporter ATP-binding protein Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229933.peg.1738 CDS AJMF02000026.1 1837 2514 1 + 678 Methionine ABC transporter permease protein Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229933.peg.1739 CDS AJMF02000026.1 2549 3391 2 + 843 Methionine ABC transporter substrate-binding protein Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229933.peg.1740 CDS AJMF02000026.1 3497 3994 2 + 498 Phospholipid-binding protein - none -
fig|6666666.229933.peg.1741 CDS AJMF02000026.1 4113 4589 3 + 477 tRNA (cytidine(34)-2@1-O)-methyltransferase (EC 2.1.1.207) Biotin synthesis cluster;
RNA methylation
fig|6666666.229933.peg.1742 CDS AJMF02000026.1 5560 4685 -1 - 876 Membrane protein LAPB - none -
fig|6666666.229933.peg.1743 CDS AJMF02000026.1 5683 5570 -1 - 114 hypothetical protein - none -
fig|6666666.229933.peg.1744 CDS AJMF02000026.1 5693 6307 2 + 615 GTP-binding protein EngB Universal GTPases
fig|6666666.229933.peg.1745 CDS AJMF02000026.1 6893 7207 2 + 315 MG(2+) CHELATASE FAMILY PROTEIN CBSS-203122.12.peg.188
fig|6666666.229933.peg.1746 CDS AJMF02000026.1 7309 9057 1 + 1749 hypothetical protein - none -
fig|6666666.229933.peg.1747 CDS AJMF02000026.1 9645 10892 3 + 1248 Ribokinase (EC 2.7.1.15) D-ribose utilization;
Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.229933.peg.1748 CDS AJMF02000026.1 12956 12129 -2 - 828 Thermostable 8-oxoguanine DNA glycosylase - none -
fig|6666666.229933.peg.1749 CDS AJMF02000026.1 13631 12972 -2 - 660 Methyltransferase - none -
fig|6666666.229933.peg.1750 CDS AJMF02000026.1 13903 19878 1 + 5976 VgrG protein - none -
fig|6666666.229933.peg.1751 CDS AJMF02000026.1 19882 20397 1 + 516 hypothetical protein - none -
fig|6666666.229933.peg.1752 CDS AJMF02000026.1 20975 21100 2 + 126 hypothetical protein - none -
fig|6666666.229933.peg.1753 CDS AJMF02000026.1 22031 21219 -2 - 813 Bll0873 protein - none -
fig|6666666.229933.peg.1754 CDS AJMF02000026.1 22623 22066 -3 - 558 Chromosome (plasmid) partitioning protein ParB Bacterial Cytoskeleton;
Cell Division Subsystem including YidCD;
RNA modification and chromosome partitioning cluster
fig|6666666.229933.peg.1755 CDS AJMF02000026.1 24436 22856 -1 - 1581 Recombinase - none -
fig|6666666.229933.peg.1756 CDS AJMF02000026.1 26679 25264 -3 - 1416 FIGfam110555 CBSS-203122.12.peg.188
fig|6666666.229933.peg.1757 CDS AJMF02000026.1 27794 26676 -2 - 1119 Mll9366 protein CBSS-203122.12.peg.188
fig|6666666.229933.peg.1758 CDS AJMF02000026.1 28645 27848 -1 - 798 TniB NTP-binding protein CBSS-203122.12.peg.188
fig|6666666.229933.peg.1759 CDS AJMF02000026.1 30564 28645 -3 - 1920 TniA putative transposase CBSS-203122.12.peg.188
fig|6666666.229933.peg.1760 CDS AJMF02000026.1 31219 30557 -1 - 663 FIGfam050825 CBSS-203122.12.peg.188
fig|6666666.229933.peg.1761 CDS AJMF02000026.1 31355 32059 2 + 705 MG(2+) CHELATASE FAMILY PROTEIN / ComM-related protein CBSS-203122.12.peg.188;
CBSS-203122.12.peg.188
fig|6666666.229933.peg.1762 CDS AJMF02000026.1 32898 32071 -3 - 828 Putative periplasmic protein YibQ, distant homology with nucleoside diphosphatase and polysaccharide deacetylase CBSS-224911.1.peg.435;
Phosphoglycerate mutase protein family
fig|6666666.229933.peg.1763 CDS AJMF02000026.1 34112 32895 -2 - 1218 Periplasmic septal ring factor with murein hydrolase activity EnvC/YibP CBSS-224911.1.peg.435;
Glutaredoxins;
Phosphoglycerate mutase protein family
fig|6666666.229933.peg.1764 CDS AJMF02000026.1 36021 34363 -3 - 1659 Phosphoglucosamine mutase (EC 5.4.2.10) Sialic Acid Metabolism;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229933.peg.1765 CDS AJMF02000026.1 36327 37010 3 + 684 Phosphoglycerate mutase (EC 5.4.2.1) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis;
Phosphoglycerate mutase protein family
fig|6666666.229933.peg.1766 CDS AJMF02000026.1 37589 37095 -2 - 495 Protein yfbU - none -
fig|6666666.229933.peg.1767 CDS AJMF02000026.1 38383 37607 -1 - 777 Nucleoside ABC transporter, periplasmic nucleoside-binding protein - none -
fig|6666666.229933.peg.1768 CDS AJMF02000026.1 40032 38449 -3 - 1584 Nickel ABC transporter, periplasmic nickel-binding protein NikA (TC 3.A.1.5.3) Transport of Nickel and Cobalt
fig|6666666.229933.peg.1769 CDS AJMF02000026.1 41429 40098 -2 - 1332 ATP-dependent hsl protease ATP-binding subunit HslU Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229933.peg.1770 CDS AJMF02000026.1 41977 41450 -1 - 528 ATP-dependent protease HslV (EC 3.4.25.-) Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229933.peg.1771 CDS AJMF02000026.1 42192 42899 3 + 708 NMN phosphatase (EC 3.1.3.5); Class B acid phosphatase precursor (EC 3.1.3.2) NAD and NADP cofactor biosynthesis global
fig|6666666.229933.peg.1772 CDS AJMF02000026.1 43598 43281 -2 - 318 hypothetical protein - none -
fig|6666666.229933.peg.1773 CDS AJMF02000026.1 45122 43878 -2 - 1245 Tryptophan-specific transport protein - none -
fig|6666666.229933.peg.1774 CDS AJMF02000026.1 45284 45811 2 + 528 Inorganic pyrophosphatase (EC 3.6.1.1) Phosphate metabolism
fig|6666666.229933.peg.1775 CDS AJMF02000026.1 45887 46660 2 + 774 Zn-dependent protease with chaperone function - none -
fig|6666666.229933.peg.1776 CDS AJMF02000026.1 47340 47984 3 + 645 3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster;
riboflavin to FAD
fig|6666666.229933.peg.1777 CDS AJMF02000026.1 49075 48071 -1 - 1005 Tryptophanyl-tRNA synthetase (EC 6.1.1.2) tRNA aminoacylation, Trp
fig|6666666.229933.peg.1778 CDS AJMF02000026.1 50611 49250 -1 - 1362 Signal recognition particle receptor protein FtsY (=alpha subunit) (TC 3.A.5.1.1) Bacterial Cell Division;
Bacterial signal recognition particle (SRP);
Universal GTPases
fig|6666666.229933.peg.1779 CDS AJMF02000026.1 50699 51283 2 + 585 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) CBSS-266117.6.peg.1260;
CBSS-269801.1.peg.1715;
RNA methylation
fig|6666666.229933.peg.1780 CDS AJMF02000026.1 51570 52535 3 + 966 PTS system, mannose-specific IIA component (EC 2.7.1.69) / PTS system, mannose-specific IIB component (EC 2.7.1.69) Mannose Metabolism;
Mannose Metabolism;
Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229933.peg.1781 CDS AJMF02000026.1 52553 53350 2 + 798 PTS system, mannose-specific IIC component - none -
fig|6666666.229933.peg.1782 CDS AJMF02000026.1 53364 54200 3 + 837 PTS system, mannose-specific IID component - none -
fig|6666666.229933.peg.1783 CDS AJMF02000026.1 54310 55485 1 + 1176 Cof protein - none -
fig|6666666.229933.peg.1784 CDS AJMF02000026.1 55777 57027 1 + 1251 Na+ dependent nucleoside transporter NupC Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.229933.peg.1785 CDS AJMF02000026.1 57153 57872 3 + 720 Purine nucleoside phosphorylase (EC 2.4.2.1) Adenosyl nucleosidases;
Deoxyribose and Deoxynucleoside Catabolism;
Purine conversions;
pyrimidine conversions
fig|6666666.229933.peg.1786 CDS AJMF02000026.1 57920 58033 2 + 114 hypothetical protein - none -
fig|6666666.229933.peg.1787 CDS AJMF02000026.1 58175 60562 2 + 2388 Biofilm PGA outer membrane secretin PgaA Biofilm Adhesin Biosynthesis
fig|6666666.229933.peg.1788 CDS AJMF02000026.1 60578 62494 2 + 1917 Biofilm PGA synthesis deacetylase PgaB (EC 3.-) Biofilm Adhesin Biosynthesis
fig|6666666.229933.peg.1789 CDS AJMF02000026.1 62503 63738 1 + 1236 Biofilm PGA synthesis N-glycosyltransferase PgaC (EC 2.4.-.-) Biofilm Adhesin Biosynthesis
fig|6666666.229933.peg.1790 CDS AJMF02000026.1 63741 64034 3 + 294 AagD - none -
fig|6666666.229933.peg.1791 CDS AJMF02000026.1 64124 64002 -2 - 123 hypothetical protein - none -
fig|6666666.229933.peg.1792 CDS AJMF02000026.1 65477 64152 -2 - 1326 Hexose phosphate uptake regulatory protein UhpC - none -
fig|6666666.229933.peg.1793 CDS AJMF02000026.1 65648 66280 2 + 633 Pyridoxamine 5@1-phosphate oxidase (EC 1.4.3.5) Pyridoxin (Vitamin B6) Biosynthesis
fig|6666666.229933.peg.1794 CDS AJMF02000026.1 67012 66368 -1 - 645 hypothetical protein - none -
fig|6666666.229933.peg.1795 CDS AJMF02000026.1 68925 67525 -3 - 1401 USG protein - none -
fig|6666666.229933.peg.1796 CDS AJMF02000026.1 70285 68984 -1 - 1302 Predicted ATPase (AAA+ superfamily) - none -
fig|6666666.229933.peg.1797 CDS AJMF02000026.1 72087 70756 -3 - 1332 ATP-dependent RNA helicase SrmB - none -
fig|6666666.229933.peg.1798 CDS AJMF02000026.1 72074 72202 2 + 129 hypothetical protein - none -
fig|6666666.229933.peg.1799 CDS AJMF02000026.1 72186 72884 3 + 699 tRNA (adenine37-N(6))-methyltransferase TrmN6 (EC 2.1.1.223) RNA methylation
fig|6666666.229933.peg.1800 CDS AJMF02000026.1 73648 72959 -1 - 690 Ribosyl nicotinamide transporter, PnuC-like NAD and NADP cofactor biosynthesis global
fig|6666666.229933.peg.1801 CDS AJMF02000026.1 74029 74688 1 + 660 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses;
Ribosome biogenesis bacterial;
tRNA modification Bacteria
fig|6666666.229933.peg.1802 CDS AJMF02000026.1 74837 74685 -2 - 153 hypothetical protein - none -
fig|6666666.229933.peg.1803 CDS AJMF02000026.1 75513 75007 -3 - 507 S-ribosylhomocysteine lyase (EC 4.4.1.21) / Autoinducer-2 production protein LuxS Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon);
Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229933.peg.1804 CDS AJMF02000026.1 76212 75727 -3 - 486 Putative membrane protein - none -
fig|6666666.229933.peg.1805 CDS AJMF02000026.1 76820 76215 -2 - 606 Galactoside O-acetyltransferase (EC 2.3.1.18) Lactose utilization
fig|6666666.229933.peg.1806 CDS AJMF02000026.1 77422 76820 -1 - 603 Putative phosphatase YqaB 2-phosphoglycolate salvage
fig|6666666.229933.peg.1807 CDS AJMF02000026.1 77551 77931 1 + 381 FIG00782409: hypothetical protein - none -
fig|6666666.229933.peg.1808 CDS AJMF02000026.1 80462 78447 -2 - 2016 ATP-dependent DNA helicase Rep DNA repair, bacterial UvrD and related helicases
fig|6666666.229933.peg.1809 CDS AJMF02000026.1 80702 80472 -2 - 231 FIG00696102: hypothetical protein - none -
fig|6666666.229933.peg.1810 CDS AJMF02000026.1 81369 80806 -3 - 564 Outer membrane protein 18/16 - none -
fig|6666666.229933.peg.1811 CDS AJMF02000026.1 81586 84387 1 + 2802 DNA polymerase I (EC 2.7.7.7) DNA Repair Base Excision
fig|6666666.229933.peg.1812 CDS AJMF02000026.1 84402 84524 3 + 123 hypothetical protein - none -
fig|6666666.229933.peg.1813 CDS AJMF02000026.1 84558 84698 3 + 141 hypothetical protein - none -
fig|6666666.229933.peg.1814 CDS AJMF02000026.1 84962 85108 2 + 147 hypothetical protein - none -
fig|6666666.229933.peg.1815 CDS AJMF02000026.1 87028 85214 -1 - 1815 5@1-nucleotidase (EC 3.1.3.5); NAD pyrophosphatase, periplasmic (EC 3.6.1.22) Purine conversions;
pyrimidine conversions
fig|6666666.229933.peg.1816 CDS AJMF02000026.1 87831 87055 -3 - 777 Protein HI0205 precursor - none -
fig|6666666.229933.peg.1817 CDS AJMF02000026.1 88088 87969 -2 - 120 hypothetical protein - none -
fig|6666666.229933.peg.1818 CDS AJMF02000026.1 88110 89036 3 + 927 ADP-L-glycero-D-manno-heptose-6-epimerase (EC 5.1.3.20) LOS core oligosaccharide biosynthesis
fig|6666666.229933.peg.1819 CDS AJMF02000026.1 89206 90333 1 + 1128 Fic family protein - none -
fig|6666666.229933.peg.1820 CDS AJMF02000026.1 90353 91396 2 + 1044 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) LOS core oligosaccharide biosynthesis
fig|6666666.229933.peg.1821 CDS AJMF02000026.1 91514 93409 2 + 1896 Glutathionylspermidine synthase (EC 6.3.1.8) / Glutathionylspermidine amidohydrolase (EC 3.5.1.78) Glutathionylspermidine and Trypanothione;
Glutathionylspermidine and Trypanothione
fig|6666666.229933.peg.1822 CDS AJMF02000026.1 94130 93495 -2 - 636 Cytochrome c-type protein NapC - none -
fig|6666666.229933.peg.1823 CDS AJMF02000026.1 94593 94144 -3 - 450 Nitrate reductase cytochrome c550-type subunit - none -
fig|6666666.229933.peg.1824 CDS AJMF02000026.1 95512 94631 -1 - 882 Polyferredoxin NapH (periplasmic nitrate reductase) - none -
fig|6666666.229933.peg.1825 CDS AJMF02000026.1 96372 95512 -3 - 861 Ferredoxin-type protein NapG (periplasmic nitrate reductase) - none -
fig|6666666.229933.peg.1826 CDS AJMF02000026.1 98885 96399 -2 - 2487 Periplasmic nitrate reductase precursor (EC 1.7.99.4) - none -
fig|6666666.229933.peg.1827 CDS AJMF02000026.1 99203 98919 -2 - 285 Periplasmic nitrate reductase component NapD - none -
fig|6666666.229933.peg.1828 CDS AJMF02000026.1 99433 99269 -1 - 165 hypothetical protein - none -
fig|6666666.229933.peg.1829 CDS AJMF02000026.1 99479 101182 2 + 1704 Nitrate/nitrite sensor protein (EC 2.7.3.-) - none -
fig|6666666.229933.peg.1830 CDS AJMF02000026.1 101197 102222 1 + 1026 UDP-N-acetylenolpyruvoylglucosamine reductase (EC 1.1.1.158) Peptidoglycan Biosynthesis;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229933.peg.1831 CDS AJMF02000026.1 102238 102552 1 + 315 Uncharacterized protein conserved in bacteria - none -
fig|6666666.229933.peg.1832 CDS AJMF02000026.1 102737 103585 2 + 849 RNA polymerase sigma factor RpoH Heat shock dnaK gene cluster extended;
Transcription initiation, bacterial sigma factors
fig|6666666.229933.peg.1833 CDS AJMF02000026.1 104179 103652 -1 - 528 DNA transformation protein TfoX CBSS-83333.1.peg.946;
Orphan regulatory proteins
fig|6666666.229933.peg.1834 CDS AJMF02000027.1 94 678 1 + 585 Hydrolase, haloacid dehalogenase-like family - none -
fig|6666666.229933.peg.1835 CDS AJMF02000027.1 1223 1369 2 + 147 Integral membrane protein - none -
fig|6666666.229933.peg.1836 CDS AJMF02000027.1 1416 1613 3 + 198 hypothetical protein - none -
fig|6666666.229933.peg.1837 CDS AJMF02000027.1 2622 1585 -3 - 1038 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) LOS core oligosaccharide biosynthesis
fig|6666666.229933.peg.1838 CDS AJMF02000027.1 4222 2804 -1 - 1419 Aspartate ammonia-lyase (EC 4.3.1.1) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229933.peg.1839 CDS AJMF02000027.1 4452 4934 3 + 483 FxsA protein - none -
fig|6666666.229933.peg.1840 CDS AJMF02000027.1 5021 5311 2 + 291 Heat shock protein 60 family co-chaperone GroES GroEL GroES
fig|6666666.229933.peg.1841 CDS AJMF02000027.1 5432 7075 2 + 1644 Heat shock protein 60 family chaperone GroEL GroEL GroES
fig|6666666.229933.peg.1842 CDS AJMF02000027.1 8021 7164 -2 - 858 Methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5) / Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9) 5-FCL-like protein;
One-carbon metabolism by tetrahydropterines;
One-carbon metabolism by tetrahydropterines
fig|6666666.229933.peg.1843 CDS AJMF02000028.1 2 175 2 + 174 hypothetical protein - none -
fig|6666666.229933.peg.1844 CDS AJMF02000030.1 1909 437 -1 - 1473 Xylulose kinase (EC 2.7.1.17) Xylose utilization
fig|6666666.229933.peg.1845 CDS AJMF02000030.1 3278 1959 -2 - 1320 Xylose isomerase (EC 5.3.1.5) Xylose utilization
fig|6666666.229933.peg.1846 CDS AJMF02000030.1 3536 4534 2 + 999 Xylose ABC transporter, periplasmic xylose-binding protein XylF Xylose utilization
fig|6666666.229933.peg.1847 CDS AJMF02000030.1 4594 6105 1 + 1512 D-xylose transport ATP-binding protein XylG Xylose utilization
fig|6666666.229933.peg.1848 CDS AJMF02000030.1 6109 7236 1 + 1128 Xylose ABC transporter, permease protein XylH Xylose utilization
fig|6666666.229933.peg.1849 CDS AJMF02000030.1 7325 8521 2 + 1197 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229933.peg.1850 CDS AJMF02000030.1 8574 9920 3 + 1347 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229933.peg.1851 CDS AJMF02000030.1 10046 9924 -2 - 123 hypothetical protein - none -
fig|6666666.229933.peg.1852 CDS AJMF02000030.1 10035 11207 3 + 1173 Xylose activator XylR (AraC family) Xylose utilization
fig|6666666.229933.peg.1853 CDS AJMF02000030.1 12691 11234 -1 - 1458 Permeases of the major facilitator superfamily - none -
fig|6666666.229933.peg.1854 CDS AJMF02000030.1 12828 12712 -3 - 117 hypothetical protein - none -
fig|6666666.229933.peg.1855 CDS AJMF02000030.1 12977 13975 2 + 999 PTS system, mannose-specific IIA component (EC 2.7.1.69) / PTS system, mannose-specific IIB component (EC 2.7.1.69) Mannose Metabolism;
Mannose Metabolism;
Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229933.peg.1856 CDS AJMF02000030.1 13987 14790 1 + 804 PTS system, mannose-specific IIC component (EC 2.7.1.69) Mannose Metabolism;
Sialic Acid Metabolism
fig|6666666.229933.peg.1857 CDS AJMF02000030.1 14899 15642 1 + 744 PTS system, mannose-specific IID component - none -
fig|6666666.229933.peg.1858 CDS AJMF02000030.1 17427 15823 -3 - 1605 Type I restriction-modification system, DNA-methyltransferase subunit M (EC 2.1.1.72) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229933.peg.1859 CDS AJMF02000030.1 18657 17527 -3 - 1131 Type I restriction-modification system, specificity subunit S (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229933.peg.1860 CDS AJMF02000030.1 19855 18866 -1 - 990 Putative DNA-binding protein in cluster with Type I restriction-modification system Restriction-Modification System
fig|6666666.229933.peg.1861 CDS AJMF02000030.1 20686 19904 -1 - 783 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229933.peg.1862 CDS AJMF02000030.1 22880 20751 -2 - 2130 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229933.peg.1863 CDS AJMF02000030.1 23181 23029 -3 - 153 hypothetical protein - none -
fig|6666666.229933.peg.1864 CDS AJMF02000030.1 23186 24232 2 + 1047 ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1) Polyamine Metabolism
fig|6666666.229933.peg.1865 CDS AJMF02000030.1 24721 24293 -1 - 429 ATP synthase epsilon chain (EC 3.6.3.14) - none -
fig|6666666.229933.peg.1866 CDS AJMF02000030.1 26136 24763 -3 - 1374 ATP synthase beta chain (EC 3.6.3.14) - none -
fig|6666666.229933.peg.1867 CDS AJMF02000030.1 27022 26153 -1 - 870 ATP synthase gamma chain (EC 3.6.3.14) - none -
fig|6666666.229933.peg.1868 CDS AJMF02000030.1 28579 27038 -1 - 1542 ATP synthase alpha chain (EC 3.6.3.14) - none -
fig|6666666.229933.peg.1869 CDS AJMF02000030.1 29140 28592 -1 - 549 ATP synthase delta chain (EC 3.6.3.14) - none -
fig|6666666.229933.peg.1870 CDS AJMF02000030.1 29624 29154 -2 - 471 ATP synthase F0 sector subunit b - none -
fig|6666666.229933.peg.1871 CDS AJMF02000030.1 29928 29674 -3 - 255 ATP synthase F0 sector subunit c (EC 3.6.3.14) - none -
fig|6666666.229933.peg.1872 CDS AJMF02000030.1 30770 29982 -2 - 789 ATP synthase F0 sector subunit a - none -
fig|6666666.229933.peg.1873 CDS AJMF02000030.1 31172 30795 -2 - 378 FIG048548: ATP synthase protein I2 - none -
fig|6666666.229933.peg.1874 CDS AJMF02000030.1 31967 31284 -2 - 684 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB Cell Division Subsystem including YidCD;
RNA methylation;
RNA modification and chromosome partitioning cluster
fig|6666666.229933.peg.1875 CDS AJMF02000030.1 32322 31960 -3 - 363 Redox-sensing transcriptional regulator QorR NADPH:quinone oxidoreductase 2
fig|6666666.229933.peg.1876 CDS AJMF02000030.1 32573 33331 2 + 759 NADPH:quinone oxidoreductase 2 NADPH:quinone oxidoreductase 2
fig|6666666.229933.peg.1877 CDS AJMF02000030.1 35492 33603 -2 - 1890 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA Cell Division Subsystem including YidCD;
RNA modification and chromosome partitioning cluster;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229933.peg.1878 CDS AJMF02000030.1 36378 35935 -3 - 444 Flavoprotein MioC Flavodoxin
fig|6666666.229933.peg.1879 CDS AJMF02000030.1 36653 36435 -2 - 219 FIG074102: hypothetical protein - none -
fig|6666666.229933.peg.1880 CDS AJMF02000030.1 36849 37862 3 + 1014 Fructose-1,6-bisphosphatase, GlpX type (EC 3.1.3.11) Glycolysis and Gluconeogenesis
fig|6666666.229933.peg.1881 CDS AJMF02000030.1 39300 38503 -3 - 798 Serine acetyltransferase (EC 2.3.1.30) Cysteine Biosynthesis;
Methionine Biosynthesis
fig|6666666.229933.peg.1882 CDS AJMF02000030.1 40316 39303 -2 - 1014 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) Glutaredoxin 3 containing cluster;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229933.peg.1883 CDS AJMF02000030.1 40906 40394 -1 - 513 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) Glutaredoxin 3 containing cluster
fig|6666666.229933.peg.1884 CDS AJMF02000030.1 41401 40922 -1 - 480 FIG136845: Rhodanese-related sulfurtransferase Glutaredoxin 3 containing cluster
fig|6666666.229933.peg.1885 CDS AJMF02000030.1 41690 43012 2 + 1323 Anaerobic C4-dicarboxylate membrane transporter DcuA - none -
fig|6666666.229933.peg.1886 CDS AJMF02000030.1 43181 44929 2 + 1749 Transport ATP-binding protein CydD Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229933.peg.1887 CDS AJMF02000030.1 44946 46580 3 + 1635 ABC transporter ATP-binding protein - none -
fig|6666666.229933.peg.1888 CDS AJMF02000030.1 47312 46692 -2 - 621 Unsaturated fatty acid biosythesis repressor FabR, TetR family - none -
fig|6666666.229933.peg.1889 CDS AJMF02000030.1 48223 47324 -1 - 900 Hydrogen peroxide-inducible genes activator LysR-family proteins in Escherichia coli;
LysR-family proteins in Salmonella enterica Typhimurium;
Oxidative stress;
Thioredoxin-disulfide reductase
fig|6666666.229933.peg.1890 CDS AJMF02000030.1 48382 49110 1 + 729 Peroxiredoxin family protein/glutaredoxin - none -
fig|6666666.229933.peg.1891 CDS AJMF02000030.1 49386 49171 -3 - 216 Protein SlyX - none -
fig|6666666.229933.peg.1892 CDS AJMF02000030.1 49481 50206 2 + 726 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase;
Potassium homeostasis
fig|6666666.229933.peg.1893 CDS AJMF02000030.1 50286 50954 3 + 669 YheO-like PAS domain - none -
fig|6666666.229933.peg.1894 CDS AJMF02000030.1 50958 51335 3 + 378 tRNA 5-methylaminomethyl-2-thiouridine synthase TusD CBSS-326442.4.peg.1852;
Sulfite reduction-associated complex DsrMKJOP and co-clustering genes;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.229933.peg.1895 CDS AJMF02000030.1 51332 51694 2 + 363 tRNA 5-methylaminomethyl-2-thiouridine synthase TusC CBSS-326442.4.peg.1852;
Sulfite reduction-associated complex DsrMKJOP and co-clustering genes;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.229933.peg.1896 CDS AJMF02000030.1 51697 51984 1 + 288 tRNA 5-methylaminomethyl-2-thiouridine synthase TusB Sulfite reduction-associated complex DsrMKJOP and co-clustering genes;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.229933.peg.1897 CDS AJMF02000030.1 52756 51989 -1 - 768 ABC-type polar amino acid transport system, ATPase component CBSS-326442.4.peg.1852
fig|6666666.229933.peg.1898 CDS AJMF02000030.1 53404 52766 -1 - 639 ABC-type amino acid transport system, permease component - none -
fig|6666666.229933.peg.1899 CDS AJMF02000030.1 54251 53472 -2 - 780 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain - none -
fig|6666666.229933.peg.1900 CDS AJMF02000030.1 55672 54377 -1 - 1296 Glycine/D-amino acid oxidases (deaminating) - none -
fig|6666666.229933.peg.1901 CDS AJMF02000030.1 57161 55797 -2 - 1365 lipoprotein, putative - none -
fig|6666666.229933.peg.1902 CDS AJMF02000030.1 57869 58993 2 + 1125 RelA/SpoT domain protein - none -
fig|6666666.229933.peg.1903 CDS AJMF02000030.1 60019 59105 -1 - 915 N-acetylmuramic acid 6-phosphate etherase - none -
fig|6666666.229933.peg.1904 CDS AJMF02000030.1 61146 60016 -3 - 1131 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) Recycling of Peptidoglycan Amino Sugars
fig|6666666.229933.peg.1905 CDS AJMF02000030.1 61286 62602 2 + 1317 N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23) / Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157) Peptidoglycan Biosynthesis;
Peptidoglycan Biosynthesis;
Sialic Acid Metabolism;
Sialic Acid Metabolism;
Transcription repair cluster;
Transcription repair cluster;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229933.peg.1906 CDS AJMF02000030.1 63845 62754 -2 - 1092 Putative exported protein precursor - none -
fig|6666666.229933.peg.1907 CDS AJMF02000030.1 64732 63983 -1 - 750 Deoxyribose operon repressor, DeoR family Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.229933.peg.1908 CDS AJMF02000030.1 65431 64760 -1 - 672 Deoxyribose-phosphate aldolase (EC 4.1.2.4) Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.229933.peg.1909 CDS AJMF02000030.1 66028 65876 -1 - 153 Integrase - none -
fig|6666666.229933.peg.1910 CDS AJMF02000030.1 68263 66821 -1 - 1443 Putative uncharacterized protein ydbH - none -
fig|6666666.229933.peg.1911 CDS AJMF02000030.1 68986 68369 -1 - 618 Multiple antibiotic resistance protein marC - none -
fig|6666666.229933.peg.1912 CDS AJMF02000030.1 69067 70554 1 + 1488 Glutathione-regulated potassium-efflux system ATP-binding protein Potassium homeostasis
fig|6666666.229933.peg.1913 CDS AJMF02000030.1 70526 70990 2 + 465 Glutathione-regulated potassium-efflux system ATP-binding protein Potassium homeostasis
fig|6666666.229933.peg.1914 CDS AJMF02000030.1 71138 72196 2 + 1059 RecA protein DNA repair, bacterial;
DNA repair, bacterial RecFOR pathway;
DNA repair system including RecA, MutS and a hypothetical protein;
RecA and RecX
fig|6666666.229933.peg.1915 CDS AJMF02000030.1 72278 72736 2 + 459 Regulatory protein RecX DNA repair system including RecA, MutS and a hypothetical protein;
RecA and RecX
fig|6666666.229933.peg.1916 CDS AJMF02000030.1 72813 73202 3 + 390 Endoribonuclease L-PSP - none -
fig|6666666.229933.peg.1917 CDS AJMF02000030.1 75271 73274 -1 - 1998 Transketolase (EC 2.2.1.1) Pentose phosphate pathway
fig|6666666.229933.peg.1918 CDS AJMF02000030.1 76357 75404 -1 - 954 Transaldolase (EC 2.2.1.2) Fructose utilization;
Pentose phosphate pathway
fig|6666666.229933.peg.1919 CDS AJMF02000031.1 2045 513 -2 - 1533 Na+/H+ antiporter - none -
fig|6666666.229933.peg.1920 CDS AJMF02000031.1 2486 2884 2 + 399 DNA-binding protein H-NS - none -
fig|6666666.229933.peg.1921 CDS AJMF02000031.1 2936 3760 2 + 825 Formyltetrahydrofolate deformylase (EC 3.5.1.10) 5-FCL-like protein;
One-carbon metabolism by tetrahydropterines
fig|6666666.229933.peg.1922 CDS AJMF02000031.1 3895 4524 1 + 630 Cell division protein FtsJ / Ribosomal RNA large subunit methyltransferase E (EC 2.1.1.-) ## LSU rRNA Um2552 Bacterial Cell Division;
RNA methylation
fig|6666666.229933.peg.1923 CDS AJMF02000031.1 4631 6583 2 + 1953 Cell division protein FtsH (EC 3.4.24.-) Bacterial Cell Division;
Cell division-ribosomal stress proteins cluster;
Folate biosynthesis cluster
fig|6666666.229933.peg.1924 CDS AJMF02000031.1 6680 7216 2 + 537 Putative transporting ATPase - none -
fig|6666666.229933.peg.1925 CDS AJMF02000031.1 7766 7344 -2 - 423 Ferric iron ABC transporter, ATP-binding protein Iron acquisition in Streptococcus
fig|6666666.229933.peg.1926 CDS AJMF02000031.1 7969 8955 1 + 987 Phosphoglycerate transport regulatory protein PgtC Phosphoglycerate transport system
fig|6666666.229933.peg.1927 CDS AJMF02000031.1 8952 10934 3 + 1983 Phosphoglycerate transport system sensor protein PgtB (EC 2.7.3.-) Phosphoglycerate transport system
fig|6666666.229933.peg.1928 CDS AJMF02000031.1 10927 11130 1 + 204 Phosphoglycerate transport system transcriptional regulatory protein PgtA Phosphoglycerate transport system
fig|6666666.229933.peg.1929 CDS AJMF02000031.1 11136 12176 3 + 1041 Phosphoglycerate transport system transcriptional regulatory protein PgtA Phosphoglycerate transport system
fig|6666666.229933.peg.1930 CDS AJMF02000031.1 13063 12224 -1 - 840 NADPH dependent preQ0 reductase (EC 1.7.1.13) - none -
fig|6666666.229933.peg.1931 CDS AJMF02000031.1 13866 13072 -3 - 795 Zn-ribbon-containing, possibly nucleic-acid-binding protein - none -
fig|6666666.229933.peg.1932 CDS AJMF02000031.1 13961 14275 2 + 315 Hypothetical protein YqcC (clustered with tRNA pseudouridine synthase C) - none -
fig|6666666.229933.peg.1933 CDS AJMF02000031.1 14272 14985 1 + 714 tRNA pseudouridine synthase C (EC 4.2.1.70) RNA pseudouridine syntheses;
tRNA modification Bacteria
fig|6666666.229933.peg.1934 CDS AJMF02000031.1 15038 15199 2 + 162 Uncharacterized protein conserved in bacteria - none -
fig|6666666.229933.peg.1935 CDS AJMF02000031.1 15390 15599 3 + 210 Cold shock protein CspD Cold shock, CspA family of proteins
fig|6666666.229933.peg.1936 CDS AJMF02000031.1 16111 15665 -1 - 447 Macrodomain Ter protein YcbG - none -
fig|6666666.229933.peg.1937 CDS AJMF02000031.1 16258 18042 1 + 1785 ATP-dependent protease La (EC 3.4.21.53) Type II Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229933.peg.1938 CDS AJMF02000031.1 18185 18715 2 + 531 3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabA form (EC 4.2.1.59) Fatty Acid Biosynthesis FASII
fig|6666666.229933.peg.1939 CDS AJMF02000031.1 19140 19496 3 + 357 DsrE-related protein - none -
fig|6666666.229933.peg.1940 CDS AJMF02000031.1 19567 23232 1 + 3666 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) DNA repair, bacterial RecBCD pathway
fig|6666666.229933.peg.1941 CDS AJMF02000031.1 23232 25211 3 + 1980 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) DNA repair, bacterial RecBCD pathway
fig|6666666.229933.peg.1942 CDS AJMF02000031.1 25224 25820 3 + 597 hypothetical protein - none -
fig|6666666.229933.peg.1943 CDS AJMF02000031.1 26062 26490 1 + 429 LSU ribosomal protein L13p (L13Ae) Ribosome LSU bacterial
fig|6666666.229933.peg.1944 CDS AJMF02000031.1 26507 26899 2 + 393 SSU ribosomal protein S9p (S16e) Ribosome SSU bacterial
fig|6666666.229933.peg.1945 CDS AJMF02000031.1 27060 27845 3 + 786 tRNA pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses;
tRNA modification Archaea;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229933.peg.1946 CDS AJMF02000031.1 28004 27858 -2 - 147 RelE/StbE replicon stabilization toxin Toxin-antitoxin replicon stabilization systems
fig|6666666.229933.peg.1947 CDS AJMF02000031.1 28140 27988 -3 - 153 StbE replicon stabilization toxin - none -
fig|6666666.229933.peg.1948 CDS AJMF02000031.1 28391 28137 -2 - 255 RelB/StbD replicon stabilization protein (antitoxin to RelE/StbE) Toxin-antitoxin replicon stabilization systems
fig|6666666.229933.peg.1949 CDS AJMF02000031.1 30063 28606 -3 - 1458 2-oxoglutarate/malate translocator - none -
fig|6666666.229933.peg.1950 CDS AJMF02000031.1 30293 31072 2 + 780 Protein of unknown function DUF419 - none -
fig|6666666.229933.peg.1951 CDS AJMF02000031.1 33623 31143 -2 - 2481 Trimethylamine-N-oxide reductase (EC 1.6.6.9) - none -
fig|6666666.229933.peg.1952 CDS AJMF02000031.1 34784 33684 -2 - 1101 Cytochrome c-type protein TorY - none -
fig|6666666.229933.peg.1953 CDS AJMF02000031.1 35090 36547 2 + 1458 tRNA S(4)U 4-thiouridine synthase (former ThiI) / Rhodanese-like domain required for thiamine synthesis Thiamin biosynthesis;
Thiamin biosynthesis;
tRNA modification Archaea;
tRNA modification Archaea;
tRNA modification Bacteria;
tRNA modification Bacteria
fig|6666666.229933.peg.1954 CDS AJMF02000031.1 37038 36631 -3 - 408 Alpha-aspartyl dipeptidase Peptidase E (EC 3.4.13.21) Dipeptidases (EC 3.4.13.-)
fig|6666666.229933.peg.1955 CDS AJMF02000031.1 37335 37039 -3 - 297 Alpha-aspartyl dipeptidase Peptidase E (EC 3.4.13.21) Dipeptidases (EC 3.4.13.-)
fig|6666666.229933.peg.1956 CDS AJMF02000031.1 37614 38510 3 + 897 Putative DNA-binding protein in cluster with Type I restriction-modification system Restriction-Modification System
fig|6666666.229933.peg.1957 CDS AJMF02000031.1 39543 38575 -3 - 969 FIG002813: LPPG:FO 2-phospho-L-lactate transferase like, CofD-like - none -
fig|6666666.229933.peg.1958 CDS AJMF02000031.1 39901 40914 1 + 1014 Molybdenum cofactor biosynthesis protein MoaA Molybdenum cofactor biosynthesis;
ar-104-EC Molybdenum cofactor biosynthesis moaABCDE
fig|6666666.229933.peg.1959 CDS AJMF02000031.1 40927 41448 1 + 522 Molybdenum cofactor biosynthesis protein MoaC Molybdenum cofactor biosynthesis;
ar-104-EC Molybdenum cofactor biosynthesis moaABCDE
fig|6666666.229933.peg.1960 CDS AJMF02000031.1 41448 41696 3 + 249 Molybdenum cofactor biosynthesis protein MoaD Molybdenum cofactor biosynthesis;
ar-104-EC Molybdenum cofactor biosynthesis moaABCDE
fig|6666666.229933.peg.1961 CDS AJMF02000031.1 41697 42152 3 + 456 Molybdenum cofactor biosynthesis protein MoaE Molybdenum cofactor biosynthesis;
ar-104-EC Molybdenum cofactor biosynthesis moaABCDE
fig|6666666.229933.peg.1962 CDS AJMF02000031.1 42352 42993 1 + 642 Stringent starvation protein A Carbon Starvation
fig|6666666.229933.peg.1963 CDS AJMF02000031.1 43005 43466 3 + 462 Stringent starvation protein B Carbon Starvation
fig|6666666.229933.peg.1964 CDS AJMF02000031.1 45032 43629 -2 - 1404 Asparaginyl-tRNA synthetase (EC 6.1.1.22) tRNA aminoacylation, Asp and Asn;
tRNA modification Archaea
fig|6666666.229933.peg.1965 CDS AJMF02000031.1 45228 46457 3 + 1230 Mlc, transcriptional repressor of MalT (the transcriptional activator of maltose regulon) and manXYZ operon Maltose and Maltodextrin Utilization
fig|6666666.229933.peg.1966 CDS AJMF02000031.1 46534 47262 1 + 729 Dethiobiotin synthetase (EC 6.3.3.3) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229933.peg.1967 CDS AJMF02000031.1 48925 47369 -1 - 1557 Autoinducer 2 (AI-2) kinase LsrK (EC 2.7.1.-) Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229933.peg.1968 CDS AJMF02000031.1 49940 48975 -2 - 966 LsrR, transcriptional repressor of lsr operon Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229933.peg.1969 CDS AJMF02000031.1 50184 50411 3 + 228 Autoinducer 2 (AI-2) ABC transport system, fused AI2 transporter subunits and ATP-binding component Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229933.peg.1970 CDS AJMF02000031.1 50398 51699 1 + 1302 Autoinducer 2 (AI-2) ABC transport system, fused AI2 transporter subunits and ATP-binding component Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229933.peg.1971 CDS AJMF02000031.1 51709 52632 1 + 924 Autoinducer 2 (AI-2) ABC transport system, membrane channel protein LsrC Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229933.peg.1972 CDS AJMF02000031.1 52625 52741 2 + 117 Autoinducer 2 (AI-2) ABC transport system, membrane channel protein LsrC Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229933.peg.1973 CDS AJMF02000031.1 52755 53759 3 + 1005 Autoinducer 2 (AI-2) ABC transport system, membrane channel protein LsrD Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229933.peg.1974 CDS AJMF02000031.1 53784 54881 3 + 1098 Autoinducer 2 (AI-2) ABC transport system, periplasmic AI-2 binding protein LsrB Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229933.peg.1975 CDS AJMF02000031.1 54905 55156 2 + 252 Autoinducer 2 (AI-2) aldolase LsrF (EC 4.2.1.-) Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229933.peg.1976 CDS AJMF02000031.1 55156 55779 1 + 624 Autoinducer 2 (AI-2) aldolase LsrF (EC 4.2.1.-) Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229933.peg.1977 CDS AJMF02000031.1 55812 56114 3 + 303 Autoinducer 2 (AI-2) modifying protein LsrG Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229933.peg.1978 CDS AJMF02000031.1 57624 56218 -3 - 1407 Pyruvate kinase (EC 2.7.1.40) Entner-Doudoroff Pathway;
Glycerate metabolism;
Glycolysis and Gluconeogenesis;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229933.peg.1979 CDS AJMF02000031.1 58899 57910 -3 - 990 Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) Ribonucleotide reduction
fig|6666666.229933.peg.1980 CDS AJMF02000031.1 60717 59032 -3 - 1686 Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) Ribonucleotide reduction
fig|6666666.229933.peg.1981 CDS AJMF02000031.1 61798 60992 -1 - 807 Tryptophan synthase alpha chain (EC 4.2.1.20) Auxin biosynthesis;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229933.peg.1982 CDS AJMF02000031.1 62994 61801 -3 - 1194 Tryptophan synthase beta chain (EC 4.2.1.20) Auxin biosynthesis;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229933.peg.1983 CDS AJMF02000031.1 63741 63004 -3 - 738 3-hydroxypropionate dehydrogenase (EC 1.1.1.298) - none -
fig|6666666.229933.peg.1984 CDS AJMF02000031.1 63729 63941 3 + 213 hypothetical protein - none -
fig|6666666.229933.peg.1985 CDS AJMF02000031.1 64447 65016 1 + 570 Outer membrane receptor for lactoferrin or transferrin, TonB-dependent protein A - none -
fig|6666666.229933.peg.1986 CDS AJMF02000031.1 65094 65210 3 + 117 hypothetical protein - none -
fig|6666666.229933.peg.1987 CDS AJMF02000031.1 65915 65229 -2 - 687 probable transcription regulator - none -
fig|6666666.229933.peg.1988 CDS AJMF02000031.1 66130 66408 1 + 279 possible DNA-binding protein - none -
fig|6666666.229933.peg.1989 CDS AJMF02000031.1 66452 67297 2 + 846 transposase - none -
fig|6666666.229933.peg.1990 CDS AJMF02000031.1 67335 67637 3 + 303 hypothetical protein - none -
fig|6666666.229933.peg.1991 CDS AJMF02000031.1 67707 67952 3 + 246 hypothetical protein - none -
fig|6666666.229933.peg.1992 CDS AJMF02000031.1 68184 68453 3 + 270 hypothetical protein - none -
fig|6666666.229933.peg.1993 CDS AJMF02000031.1 68729 68986 2 + 258 hypothetical protein - none -
fig|6666666.229933.peg.1994 CDS AJMF02000031.1 69541 71328 1 + 1788 Outer membrane receptor for lactoferrin or transferrin, TonB-dependent protein A - none -
fig|6666666.229933.peg.1995 CDS AJMF02000031.1 71664 71533 -3 - 132 hypothetical protein - none -
fig|6666666.229933.peg.1996 CDS AJMF02000031.1 73036 71732 -1 - 1305 Oxaloacetate decarboxylase beta chain (EC 4.1.1.3) Na+ translocating decarboxylases and related biotin-dependent enzymes;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229933.peg.1997 CDS AJMF02000031.1 74843 73047 -2 - 1797 Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3) Na+ translocating decarboxylases and related biotin-dependent enzymes;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229933.peg.1998 CDS AJMF02000031.1 75125 74859 -2 - 267 Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3) Na+ translocating decarboxylases and related biotin-dependent enzymes;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229933.peg.1999 CDS AJMF02000031.1 75788 75907 2 + 120 hypothetical protein - none -
fig|6666666.229933.peg.2000 CDS AJMF02000031.1 76425 76150 -3 - 276 [NiFe] hydrogenase metallocenter assembly protein HybG G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229933.peg.2001 CDS AJMF02000031.1 78310 76880 -1 - 1431 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24) Auxin biosynthesis;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis;
Tryptophan synthesis
fig|6666666.229933.peg.2002 CDS AJMF02000031.1 78597 78319 -3 - 279 HigA protein (antitoxin to HigB) Toxin-antitoxin replicon stabilization systems
fig|6666666.229933.peg.2003 CDS AJMF02000031.1 78885 78607 -3 - 279 HigB toxin protein Toxin-antitoxin replicon stabilization systems
fig|6666666.229933.peg.2004 CDS AJMF02000031.1 79981 78980 -1 - 1002 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) Auxin biosynthesis;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229933.peg.2005 CDS AJMF02000031.1 80385 79993 -3 - 393 putative - none -
fig|6666666.229933.peg.2006 CDS AJMF02000031.1 81049 80459 -1 - 591 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229933.peg.2007 CDS AJMF02000031.1 82607 81060 -2 - 1548 Anthranilate synthase, aminase component (EC 4.1.3.27) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229933.peg.2008 CDS AJMF02000031.1 83329 82775 -1 - 555 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC 3.1.3.45) KDO2-Lipid A biosynthesis
fig|6666666.229933.peg.2009 CDS AJMF02000031.1 84264 83329 -3 - 936 Arabinose 5-phosphate isomerase (EC 5.3.1.13) KDO2-Lipid A biosynthesis
fig|6666666.229933.peg.2010 CDS AJMF02000031.1 84947 85822 2 + 876 Probable protease htpX homolog - none -
fig|6666666.229933.peg.2011 CDS AJMF02000031.1 86162 87151 2 + 990 Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20) tRNA aminoacylation, Phe
fig|6666666.229933.peg.2012 CDS AJMF02000031.1 87171 89561 3 + 2391 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) tRNA aminoacylation, Phe
fig|6666666.229933.peg.2013 CDS AJMF02000031.1 89565 89861 3 + 297 Integration host factor alpha subunit DNA structural proteins, bacterial
fig|6666666.229933.peg.2014 CDS AJMF02000031.1 89913 90401 3 + 489 Probable lipoprotein nlpC precursor - none -
fig|6666666.229933.peg.2015 CDS AJMF02000031.1 91461 90496 -3 - 966 tRNA(Cytosine32)-2-thiocytidine synthetase CBSS-326442.4.peg.1852;
tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229933.peg.2016 CDS AJMF02000031.1 91602 92018 3 + 417 putative membrane protein - none -
fig|6666666.229933.peg.2017 CDS AJMF02000031.1 93088 92108 -1 - 981 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins Ton and Tol transport systems
fig|6666666.229933.peg.2018 CDS AJMF02000031.1 94097 93120 -2 - 978 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins Ton and Tol transport systems
fig|6666666.229933.peg.2019 CDS AJMF02000031.1 94596 94099 -3 - 498 FIG00697418: hypothetical protein - none -
fig|6666666.229933.peg.2020 CDS AJMF02000031.1 94807 95808 1 + 1002 ABC transporter, solute-binding protein - none -
fig|6666666.229933.peg.2021 CDS AJMF02000031.1 96418 96795 1 + 378 Vitamin B12 ABC transporter, permease component BtuC - none -
fig|6666666.229933.peg.2022 CDS AJMF02000031.1 96792 97541 3 + 750 ABC transporter ATP-binding protein - none -
fig|6666666.229933.peg.2023 CDS AJMF02000031.1 97636 98238 1 + 603 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins Ton and Tol transport systems
fig|6666666.229933.peg.2024 CDS AJMF02000031.1 98235 98495 3 + 261 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins Ton and Tol transport systems
fig|6666666.229933.peg.2025 CDS AJMF02000031.1 98523 100031 3 + 1509 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins Ton and Tol transport systems
fig|6666666.229933.peg.2026 CDS AJMF02000031.1 100359 100150 -3 - 210 Molybdate-binding domain of ModE Molybdenum cofactor biosynthesis
fig|6666666.229933.peg.2027 CDS AJMF02000031.1 101475 100441 -3 - 1035 FIG00362752: hypothetical protein - none -
fig|6666666.229933.peg.2028 CDS AJMF02000031.1 102282 101488 -3 - 795 Glutathione synthetase (EC 6.3.2.3) Cluster containing Glutathione synthetase;
Glutathione: Biosynthesis and gamma-glutamyl cycle;
Heat shock dnaK gene cluster extended
fig|6666666.229933.peg.2029 CDS AJMF02000031.1 103301 102282 -2 - 1020 Vitamin B12 ABC transporter, permease component BtuC - none -
fig|6666666.229933.peg.2030 CDS AJMF02000031.1 103451 103320 -2 - 132 hypothetical protein - none -
fig|6666666.229933.peg.2031 CDS AJMF02000031.1 104847 103429 -3 - 1419 Outer membrane component of tripartite multidrug resistance system Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria
fig|6666666.229933.peg.2032 CDS AJMF02000031.1 105994 104867 -1 - 1128 ABC-type multidrug transport system, permease component - none -
fig|6666666.229933.peg.2033 CDS AJMF02000031.1 108740 105996 -2 - 2745 ABC-type multidrug transport system, permease component - none -
fig|6666666.229933.peg.2034 CDS AJMF02000031.1 109699 108743 -1 - 957 HlyD family secretion protein - none -
fig|6666666.229933.peg.2035 CDS AJMF02000031.1 109847 110410 2 + 564 Transcriptional regulator, TetR family - none -
fig|6666666.229933.peg.2036 CDS AJMF02000031.1 111651 110461 -3 - 1191 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229933.peg.2037 CDS AJMF02000031.1 112073 114682 2 + 2610 Membrane alanine aminopeptidase N (EC 3.4.11.2) Aminopeptidases (EC 3.4.11.-)
fig|6666666.229933.peg.2038 CDS AJMF02000031.1 114755 115774 2 + 1020 Dihydroorotate dehydrogenase (EC 1.3.3.1) De Novo Pyrimidine Synthesis
fig|6666666.229933.peg.2039 CDS AJMF02000031.1 115788 116624 3 + 837 COG0613, Predicted metal-dependent phosphoesterases (PHP family) YrdC-YciO-Sua5 protein family;
tRNA modification Bacteria
fig|6666666.229933.peg.2040 CDS AJMF02000031.1 118306 119451 1 + 1146 DNA topoisomerase I (EC 5.99.1.2) CBSS-272943.3.peg.1367;
Conserved gene cluster associated with Met-tRNA formyltransferase;
DNA topoisomerases, Type I, ATP-independent
fig|6666666.229933.peg.2041 CDS AJMF02000031.1 120372 119536 -3 - 837 ABC-type Co2+ transport system, periplasmic component - none -
fig|6666666.229933.peg.2042 CDS AJMF02000031.1 121431 120499 -3 - 933 Universal stress protein E Universal stress protein family
fig|6666666.229933.peg.2043 CDS AJMF02000031.1 122323 121550 -1 - 774 Fumarate and nitrate reduction regulatory protein Oxidative stress
fig|6666666.229933.peg.2044 CDS AJMF02000031.1 122479 122601 1 + 123 hypothetical protein - none -
fig|6666666.229933.peg.2045 CDS AJMF02000031.1 123160 122663 -1 - 498 Ferritin-like protein 2 - none -
fig|6666666.229933.peg.2046 CDS AJMF02000031.1 123661 123176 -1 - 486 Ferritin-like protein 2 - none -
fig|6666666.229933.peg.2047 CDS AJMF02000031.1 125152 124670 -1 - 483 putative phage-related secreted protein - none -
fig|6666666.229933.peg.2048 CDS AJMF02000031.1 125465 125160 -2 - 306 putative phage-related membrane protein - none -
fig|6666666.229933.rna.1 RNA AJMF02000002.1 87 206 3 + 120 5S RNA - none -
fig|6666666.229933.rna.2 RNA AJMF02000002.1 213 286 3 + 74 tRNA-Asp-GTC - none -
fig|6666666.229933.rna.3 RNA AJMF02000002.1 324 396 3 + 73 tRNA-Trp-CCA tRNAs
fig|6666666.229933.rna.4 RNA AJMF02000002.1 19030 18944 -1 - 87 tRNA-Ser-GGA tRNAs
fig|6666666.229933.rna.5 RNA AJMF02000003.1 138 65 -3 - 74 tRNA-Pro-TGG - none -
fig|6666666.229933.rna.6 RNA AJMF02000003.1 216 144 -3 - 73 tRNA-His-GTG - none -
fig|6666666.229933.rna.7 RNA AJMF02000003.1 324 251 -3 - 74 tRNA-Arg-CCG tRNAs
fig|6666666.229933.rna.8 RNA AJMF02000003.1 50264 50336 2 + 73 tRNA-Asn-GTT - none -
fig|6666666.229933.rna.9 RNA AJMF02000006.1 77 3119 2 + 3043 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA - none -
fig|6666666.229933.rna.10 RNA AJMF02000006.1 3385 3500 1 + 116 5S RNA - none -
fig|6666666.229933.rna.11 RNA AJMF02000009.1 22202 22130 -2 - 73 tRNA-Gly-GCC tRNAs
fig|6666666.229933.rna.12 RNA AJMF02000014.1 123382 123310 -1 - 73 tRNA-Ala-GGC tRNAs
fig|6666666.229933.rna.13 RNA AJMF02000014.1 125192 125264 2 + 73 tRNA-Val-TAC - none -
fig|6666666.229933.rna.14 RNA AJMF02000014.1 125295 125367 3 + 73 tRNA-Val-TAC - none -
fig|6666666.229933.rna.15 RNA AJMF02000016.1 37494 37566 3 + 73 tRNA-Gly-GCC tRNAs
fig|6666666.229933.rna.16 RNA AJMF02000016.1 37571 37654 2 + 84 tRNA-Leu-TAA - none -
fig|6666666.229933.rna.17 RNA AJMF02000016.1 37710 37782 3 + 73 tRNA-Lys-TTT - none -
fig|6666666.229933.rna.18 RNA AJMF02000016.1 90670 90587 -1 - 84 tRNA-Leu-CAG tRNAs
fig|6666666.229933.rna.19 RNA AJMF02000016.1 118858 118776 -1 - 83 tRNA-Leu-GAG tRNAs
fig|6666666.229933.rna.20 RNA AJMF02000016.1 191367 191440 3 + 74 tRNA-Met-CAT - none -
fig|6666666.229933.rna.21 RNA AJMF02000016.1 220346 220418 2 + 73 tRNA-Thr-TGT - none -
fig|6666666.229933.rna.22 RNA AJMF02000016.1 220452 220533 3 + 82 tRNA-Tyr-GTA - none -
fig|6666666.229933.rna.23 RNA AJMF02000016.1 220577 220648 2 + 72 tRNA-Gly-TCC - none -
fig|6666666.229933.rna.24 RNA AJMF02000016.1 220655 220727 2 + 73 tRNA-Thr-GGT - none -
fig|6666666.229933.rna.25 RNA AJMF02000018.1 60865 60947 1 + 83 tRNA-Leu-CAA tRNAs
fig|6666666.229933.rna.26 RNA AJMF02000018.1 199122 199195 3 + 74 tRNA-Asp-GTC - none -
fig|6666666.229933.rna.27 RNA AJMF02000018.1 199221 199294 3 + 74 tRNA-Asp-GTC - none -
fig|6666666.229933.rna.28 RNA AJMF02000018.1 241460 241387 -2 - 74 tRNA-Lys-CTT - none -
fig|6666666.229933.rna.29 RNA AJMF02000018.1 241561 241489 -1 - 73 tRNA-Lys-TTT - none -
fig|6666666.229933.rna.30 RNA AJMF02000018.1 289620 289534 -3 - 87 tRNA-Ser-TGA - none -
fig|6666666.229933.rna.31 RNA AJMF02000018.1 296975 297047 2 + 73 tRNA-Gly-GCC tRNAs
fig|6666666.229933.rna.32 RNA AJMF02000018.1 297059 297129 2 + 71 tRNA-Cys-GCA tRNAs
fig|6666666.229933.rna.33 RNA AJMF02000018.1 305361 305288 -3 - 74 tRNA-Met-CAT - none -
fig|6666666.229933.rna.34 RNA AJMF02000019.1 155 1694 2 + 1540 Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA - none -
fig|6666666.229933.rna.35 RNA AJMF02000020.1 85876 85804 -1 - 73 tRNA-Asn-GTT - none -
fig|6666666.229933.rna.36 RNA AJMF02000020.1 85956 85884 -3 - 73 tRNA-Phe-GAA tRNAs
fig|6666666.229933.rna.37 RNA AJMF02000025.1 79961 79888 -2 - 74 tRNA-Met-CAT - none -
fig|6666666.229933.rna.38 RNA AJMF02000025.1 104589 104518 -3 - 72 tRNA-Gln-TTG - none -
fig|6666666.229933.rna.39 RNA AJMF02000025.1 104701 104630 -1 - 72 tRNA-Gln-TTG - none -
fig|6666666.229933.rna.40 RNA AJMF02000025.1 104815 104734 -1 - 82 tRNA-Leu-TAG - none -
fig|6666666.229933.rna.41 RNA AJMF02000025.1 104897 104824 -2 - 74 tRNA-Met-CAT - none -
fig|6666666.229933.rna.42 RNA AJMF02000026.1 78079 78006 -1 - 74 tRNA-Arg-ACG tRNAs
fig|6666666.229933.rna.43 RNA AJMF02000026.1 78210 78137 -3 - 74 tRNA-Arg-ACG tRNAs
fig|6666666.229933.rna.44 RNA AJMF02000026.1 78321 78231 -3 - 91 tRNA-Ser-GCT - none -
fig|6666666.229933.rna.45 RNA AJMF02000027.1 8178 8251 3 + 74 tRNA-Pro-TGG - none -
fig|6666666.229933.rna.46 RNA AJMF02000027.1 8288 8361 2 + 74 tRNA-Arg-TCT - none -
fig|6666666.229933.rna.47 RNA AJMF02000029.1 80 153 2 + 74 tRNA-Ile-GAT - none -
fig|6666666.229933.rna.48 RNA AJMF02000029.1 206 278 2 + 73 tRNA-Ala-TGC - none -
fig|6666666.229933.rna.49 RNA AJMF02000030.1 362 272 -2 - 91 tRNA-SeC(p)-TCA - none -
fig|6666666.229933.rna.50 RNA AJMF02000031.1 18899 18972 2 + 74 tRNA-Val-GAC tRNAs