fig|6666666.229934.peg.1 CDS CP012958.1 158 385 2 + 228 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229934.peg.2 CDS CP012958.1 463 708 1 + 246 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229934.peg.3 CDS CP012958.1 1132 1761 1 + 630 Mobile element protein - none -
fig|6666666.229934.peg.4 CDS CP012958.1 1857 2441 3 + 585 Hydrolase, haloacid dehalogenase-like family - none -
fig|6666666.229934.peg.5 CDS CP012958.1 2986 3132 1 + 147 Integral membrane protein - none -
fig|6666666.229934.peg.6 CDS CP012958.1 3179 3376 2 + 198 hypothetical protein - none -
fig|6666666.229934.peg.7 CDS CP012958.1 4385 3348 -2 - 1038 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) LOS core oligosaccharide biosynthesis
fig|6666666.229934.peg.8 CDS CP012958.1 5985 4567 -3 - 1419 Aspartate ammonia-lyase (EC 4.3.1.1) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229934.peg.9 CDS CP012958.1 6215 6697 2 + 483 FxsA protein - none -
fig|6666666.229934.peg.10 CDS CP012958.1 6784 7074 1 + 291 Heat shock protein 60 family co-chaperone GroES GroEL GroES
fig|6666666.229934.peg.11 CDS CP012958.1 7195 8838 1 + 1644 Heat shock protein 60 family chaperone GroEL GroEL GroES
fig|6666666.229934.peg.12 CDS CP012958.1 9784 8927 -1 - 858 Methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5) / Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9) 5-FCL-like protein;
One-carbon metabolism by tetrahydropterines;
One-carbon metabolism by tetrahydropterines;
Serine-glyoxylate cycle;
Serine-glyoxylate cycle
fig|6666666.229934.peg.13 CDS CP012958.1 11007 10201 -3 - 807 Mobile element protein - none -
fig|6666666.229934.peg.14 CDS CP012958.1 11177 11004 -2 - 174 hypothetical protein - none -
fig|6666666.229934.peg.15 CDS CP012958.1 11805 11449 -3 - 357 Diacylglycerol kinase (EC 2.7.1.107) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Riboflavin synthesis cluster
fig|6666666.229934.peg.16 CDS CP012958.1 14061 11830 -3 - 2232 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I CBSS-176299.4.peg.1292;
Stringent Response, (p)ppGpp metabolism
fig|6666666.229934.peg.17 CDS CP012958.1 15387 14071 -3 - 1317 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) RNA methylation
fig|6666666.229934.peg.18 CDS CP012958.1 16075 15389 -1 - 687 DNA recombination and repair protein RecO CBSS-176299.4.peg.1292;
DNA repair, bacterial RecFOR pathway;
Glycyl-tRNA synthetase containing cluster
fig|6666666.229934.peg.19 CDS CP012958.1 17220 16372 -3 - 849 Translation elongation factor Ts CBSS-312309.3.peg.1965;
Ribosome recycling related cluster;
Translation elongation factors bacterial
fig|6666666.229934.peg.20 CDS CP012958.1 18097 17375 -1 - 723 SSU ribosomal protein S2p (SAe) CBSS-312309.3.peg.1965;
Ribosome recycling related cluster
fig|6666666.229934.peg.21 CDS CP012958.1 18561 18172 -3 - 390 Patatin-like phospholipase - none -
fig|6666666.229934.peg.22 CDS CP012958.1 19567 18680 -1 - 888 Folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress - none -
fig|6666666.229934.peg.23 CDS CP012958.1 20458 19595 -1 - 864 Protein YicC CBSS-323097.3.peg.2594
fig|6666666.229934.peg.24 CDS CP012958.1 20576 21292 2 + 717 Ribonuclease PH (EC 2.7.7.56) Heat shock dnaK gene cluster extended;
tRNA processing
fig|6666666.229934.peg.25 CDS CP012958.1 21302 21946 2 + 645 Orotate phosphoribosyltransferase (EC 2.4.2.10) De Novo Pyrimidine Synthesis
fig|6666666.229934.peg.26 CDS CP012958.1 22028 22903 2 + 876 DnaJ-like protein DjlA - none -
fig|6666666.229934.peg.27 CDS CP012958.1 22907 23131 2 + 225 tRNA-dihydrouridine synthase C (EC 1.-.-.-) Murein hydrolase regulation and cell death;
tRNA modification Bacteria
fig|6666666.229934.peg.28 CDS CP012958.1 23135 23569 2 + 435 tRNA-dihydrouridine synthase C (EC 1.-.-.-) Murein hydrolase regulation and cell death;
tRNA modification Bacteria
fig|6666666.229934.peg.29 CDS CP012958.1 23569 23874 1 + 306 tRNA-dihydrouridine synthase C (EC 1.-.-.-) Murein hydrolase regulation and cell death;
tRNA modification Bacteria
fig|6666666.229934.peg.30 CDS CP012958.1 24953 23895 -2 - 1059 Ferric iron ABC transporter, ATP-binding protein Iron acquisition in Streptococcus
fig|6666666.229934.peg.31 CDS CP012958.1 26489 24969 -2 - 1521 Ferric iron ABC transporter, permease protein Iron acquisition in Streptococcus
fig|6666666.229934.peg.32 CDS CP012958.1 27568 26570 -1 - 999 Ferric iron ABC transporter, iron-binding protein Iron acquisition in Streptococcus
fig|6666666.229934.peg.33 CDS CP012958.1 28128 27787 -3 - 342 FIG002060: uncharacterized protein YggL CBSS-83333.1.peg.2911
fig|6666666.229934.peg.34 CDS CP012958.1 28926 28159 -3 - 768 tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33) CBSS-83333.1.peg.2911;
RNA methylation;
tRNA modification Bacteria
fig|6666666.229934.peg.35 CDS CP012958.1 29092 30282 1 + 1191 A/G-specific adenine glycosylase (EC 3.2.2.-) DNA repair, bacterial
fig|6666666.229934.peg.36 CDS CP012958.1 30260 30538 2 + 279 FIG001341: Probable Fe(2+)-trafficking protein YggX Heat shock dnaK gene cluster extended
fig|6666666.229934.peg.37 CDS CP012958.1 30541 31620 1 + 1080 Membrane-bound lytic murein transglycosylase C precursor (EC 3.2.1.-) Murein Hydrolases
fig|6666666.229934.peg.38 CDS CP012958.1 32015 32140 2 + 126 hypothetical protein - none -
fig|6666666.229934.peg.39 CDS CP012958.1 32714 32121 -2 - 594 Hypothetical lipoprotein YajG precursor CBSS-339671.5.peg.589
fig|6666666.229934.peg.40 CDS CP012958.1 32818 33129 1 + 312 Cell division protein BolA Bacterial Cell Division;
CBSS-339671.5.peg.589
fig|6666666.229934.peg.41 CDS CP012958.1 33139 33255 1 + 117 hypothetical protein - none -
fig|6666666.229934.peg.42 CDS CP012958.1 33403 33266 -1 - 138 hypothetical protein - none -
fig|6666666.229934.peg.43 CDS CP012958.1 33485 34825 2 + 1341 Na(+)-translocating NADH-quinone reductase subunit A (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229934.peg.44 CDS CP012958.1 34828 36063 1 + 1236 Na(+)-translocating NADH-quinone reductase subunit B (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229934.peg.45 CDS CP012958.1 36056 36841 2 + 786 Na(+)-translocating NADH-quinone reductase subunit C (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229934.peg.46 CDS CP012958.1 36841 37470 1 + 630 Na(+)-translocating NADH-quinone reductase subunit D (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229934.peg.47 CDS CP012958.1 37474 38070 1 + 597 Na(+)-translocating NADH-quinone reductase subunit E (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229934.peg.48 CDS CP012958.1 38082 39317 3 + 1236 Na(+)-translocating NADH-quinone reductase subunit F (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229934.peg.49 CDS CP012958.1 39322 39471 1 + 150 hypothetical protein - none -
fig|6666666.229934.peg.50 CDS CP012958.1 39468 40556 3 + 1089 Thiamin biosynthesis lipoprotein ApbE - none -
fig|6666666.229934.peg.51 CDS CP012958.1 40635 40892 3 + 258 Probable exported or periplasmic protein in ApbE locus Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229934.peg.52 CDS CP012958.1 41153 42304 2 + 1152 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) CBSS-354.1.peg.876;
RNA methylation;
Riboflavin, FMN and FAD metabolism in plants;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229934.peg.53 CDS CP012958.1 42757 42873 1 + 117 hypothetical protein - none -
fig|6666666.229934.peg.54 CDS CP012958.1 42942 44252 3 + 1311 Enolase (EC 4.2.1.11) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis;
Serine-glyoxylate cycle
fig|6666666.229934.peg.55 CDS CP012958.1 44767 44348 -1 - 420 Putative Holliday junction resolvase YggF Cluster containing Alanyl-tRNA synthetase;
Cluster containing Glutathione synthetase
fig|6666666.229934.peg.56 CDS CP012958.1 45324 44767 -3 - 558 UPF0301 protein YqgE Cluster containing Glutathione synthetase
fig|6666666.229934.peg.57 CDS CP012958.1 45976 45341 -1 - 636 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) Cluster containing Glutathione synthetase;
Heat shock dnaK gene cluster extended;
RNA methylation
fig|6666666.229934.peg.58 CDS CP012958.1 46074 46205 3 + 132 hypothetical protein - none -
fig|6666666.229934.peg.59 CDS CP012958.1 46479 46162 -3 - 318 Methionine repressor MetJ Methionine Biosynthesis
fig|6666666.229934.peg.60 CDS CP012958.1 47521 46634 -1 - 888 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) - none -
fig|6666666.229934.peg.61 CDS CP012958.1 48961 47597 -1 - 1365 Phosphomannomutase (EC 5.4.2.8) Mannose Metabolism
fig|6666666.229934.peg.62 CDS CP012958.1 49175 48993 -2 - 183 Carbon storage regulator Carbon Starvation;
Carbon storage regulator
fig|6666666.229934.peg.63 CDS CP012958.1 51922 49298 -1 - 2625 Alanyl-tRNA synthetase (EC 6.1.1.7) Cluster containing Alanyl-tRNA synthetase;
tRNA aminoacylation, Ala
fig|6666666.229934.peg.64 CDS CP012958.1 52547 52122 -2 - 426 Universal stress protein A Universal stress protein family
fig|6666666.229934.peg.65 CDS CP012958.1 52666 53523 1 + 858 Nucleoside triphosphate pyrophosphohydrolase MazG (EC 3.6.1.8) Nucleoside triphosphate pyrophosphohydrolase MazG
fig|6666666.229934.peg.66 CDS CP012958.1 54610 53621 -1 - 990 Cytosine deaminase (EC 3.5.4.1) CBSS-326442.4.peg.1852;
Creatine and Creatinine Degradation;
pyrimidine conversions
fig|6666666.229934.peg.67 CDS CP012958.1 56608 54869 -1 - 1740 FIG001881: hydrolase of alkaline phosphatase superfamily CBSS-211586.1.peg.1979
fig|6666666.229934.peg.68 CDS CP012958.1 56837 56613 -2 - 225 FIG002927: hypothetical protein CBSS-211586.1.peg.1979
fig|6666666.229934.peg.69 CDS CP012958.1 56964 57989 3 + 1026 Nucleoid-associated protein NdpA CBSS-211586.1.peg.1979
fig|6666666.229934.peg.70 CDS CP012958.1 58055 58468 2 + 414 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex Lipopolysaccharide assembly
fig|6666666.229934.peg.71 CDS CP012958.1 58510 59205 1 + 696 Copper-sensing two-component system response regulator CpxR Orphan regulatory proteins
fig|6666666.229934.peg.72 CDS CP012958.1 59250 60638 3 + 1389 Copper sensory histidine kinase CpxA Orphan regulatory proteins
fig|6666666.229934.peg.73 CDS CP012958.1 61902 60694 -3 - 1209 Sodium/glutamate symport protein - none -
fig|6666666.229934.peg.74 CDS CP012958.1 62502 62068 -3 - 435 D-tyrosyl-tRNA(Tyr) deacylase (EC 3.6.1.n1) - none -
fig|6666666.229934.peg.75 CDS CP012958.1 63329 62499 -2 - 831 Ribonuclease BN (EC 3.1.-.-) - none -
fig|6666666.229934.peg.76 CDS CP012958.1 63799 63326 -1 - 474 UPF0225 protein YchJ Broadly distributed proteins not in subsystems
fig|6666666.229934.peg.77 CDS CP012958.1 64470 63802 -3 - 669 Uncharacterized protein conserved in bacteria - none -
fig|6666666.229934.peg.78 CDS CP012958.1 64596 66095 3 + 1500 ATPase component BioM of energizing module of biotin ECF transporter Biotin biosynthesis;
Biotin synthesis cluster;
ECF class transporters
fig|6666666.229934.peg.79 CDS CP012958.1 66484 67248 1 + 765 putative tetracenomycin polyketide synthesis O-methyltransferase - none -
fig|6666666.229934.peg.80 CDS CP012958.1 68219 67326 -2 - 894 Transcriptional regulator, LysR family - none -
fig|6666666.229934.peg.81 CDS CP012958.1 68578 69423 1 + 846 oxidoreductase of aldo/keto reductase family, subgroup 1 - none -
fig|6666666.229934.peg.82 CDS CP012958.1 69487 70467 1 + 981 Aldo-keto reductase - none -
fig|6666666.229934.peg.83 CDS CP012958.1 70693 71748 1 + 1056 Carboxylesterase type B - none -
fig|6666666.229934.peg.84 CDS CP012958.1 72016 72348 1 + 333 Carboxylesterase type B - none -
fig|6666666.229934.peg.85 CDS CP012958.1 72484 73593 1 + 1110 Putative exported protein precursor - none -
fig|6666666.229934.peg.86 CDS CP012958.1 74622 73732 -3 - 891 Transcriptional regulator, LysR family - none -
fig|6666666.229934.peg.87 CDS CP012958.1 74722 75786 1 + 1065 FIG01220323: hypothetical protein - none -
fig|6666666.229934.peg.88 CDS CP012958.1 77774 75939 -2 - 1836 Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) Sialic Acid Metabolism;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229934.peg.89 CDS CP012958.1 78626 77829 -2 - 798 Transcriptional regulator of glmS gene, DeoR family - none -
fig|6666666.229934.peg.90 CDS CP012958.1 79024 78752 -1 - 273 DNA-binding protein HU-alpha DNA structural proteins, bacterial;
DNA uptake cluster
fig|6666666.229934.peg.91 CDS CP012958.1 79781 79191 -2 - 591 FIG01200173: hypothetical protein - none -
fig|6666666.229934.peg.92 CDS CP012958.1 80863 79799 -1 - 1065 Uroporphyrinogen III decarboxylase (EC 4.1.1.37) Heme and Siroheme Biosynthesis
fig|6666666.229934.peg.93 CDS CP012958.1 81750 80860 -3 - 891 NADH pyrophosphatase (EC 3.6.1.22) DNA uptake cluster;
Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229934.peg.94 CDS CP012958.1 82443 81799 -3 - 645 converved hypothetical protein - none -
fig|6666666.229934.peg.95 CDS CP012958.1 82701 84317 3 + 1617 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) CBSS-584.1.peg.3382;
Pyruvate metabolism I: anaplerotic reactions, PEP;
Serine-glyoxylate cycle
fig|6666666.229934.peg.96 CDS CP012958.1 85929 84382 -3 - 1548 Exopolyphosphatase (EC 3.6.1.11) Phosphate metabolism;
Polyphosphate
fig|6666666.229934.peg.97 CDS CP012958.1 89810 85932 -2 - 3879 Uncharacterized protein YtfN Cluster Ytf and putative sugar transporter;
Putative sugar ABC transporter (ytf cluster)
fig|6666666.229934.peg.98 CDS CP012958.1 91697 89838 -2 - 1860 Uncharacterized protein YtfM precursor Cluster Ytf and putative sugar transporter;
Putative sugar ABC transporter (ytf cluster)
fig|6666666.229934.peg.99 CDS CP012958.1 92393 91764 -2 - 630 Nitrate/nitrite response regulator protein - none -
fig|6666666.229934.peg.100 CDS CP012958.1 94904 92403 -2 - 2502 Adenylate cyclase (EC 4.6.1.1) cAMP signaling in bacteria
fig|6666666.229934.peg.101 CDS CP012958.1 95060 95986 2 + 927 Porphobilinogen deaminase (EC 2.5.1.61) Heme and Siroheme Biosynthesis
fig|6666666.229934.peg.102 CDS CP012958.1 95999 96745 2 + 747 Uroporphyrinogen-III synthase (EC 4.2.1.75) Heme and Siroheme Biosynthesis
fig|6666666.229934.peg.103 CDS CP012958.1 96776 98161 2 + 1386 Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) Heme and Siroheme Biosynthesis
fig|6666666.229934.peg.104 CDS CP012958.1 98174 99451 2 + 1278 Uncharacterized protein EC-HemY, likely associated with heme metabolism based on gene clustering with hemC, hemD in Proteobacteria (unrelated to HemY-type PPO in GramPositives) - none -
fig|6666666.229934.peg.105 CDS CP012958.1 100229 99492 -2 - 738 Putative preQ0 transporter Queuosine-Archaeosine Biosynthesis
fig|6666666.229934.peg.106 CDS CP012958.1 100491 100772 3 + 282 hypothetical protein - none -
fig|6666666.229934.peg.107 CDS CP012958.1 100958 101545 2 + 588 DNA-directed RNA polymerase specialized sigma subunit, sigma24-like - none -
fig|6666666.229934.peg.108 CDS CP012958.1 101560 101751 1 + 192 hypothetical protein - none -
fig|6666666.229934.peg.109 CDS CP012958.1 102316 101834 -1 - 483 Transcription elongation factor GreB CBSS-243265.1.peg.198;
Transcription factors bacterial
fig|6666666.229934.peg.110 CDS CP012958.1 102527 102661 2 + 135 Transcription accessory protein (S1 RNA-binding domain) CBSS-243265.1.peg.198;
Cell division-ribosomal stress proteins cluster;
Transcription factors bacterial
fig|6666666.229934.peg.111 CDS CP012958.1 103650 103051 -3 - 600 Phosphoglycerate mutase (EC 5.4.2.1) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis;
Phosphoglycerate mutase protein family
fig|6666666.229934.peg.112 CDS CP012958.1 105131 103662 -2 - 1470 Sodium-dependent transporter - none -
fig|6666666.229934.peg.113 CDS CP012958.1 105241 106128 1 + 888 RuBisCO operon transcriptional regulator CO2 uptake, carboxysome
fig|6666666.229934.peg.114 CDS CP012958.1 106345 108660 1 + 2316 Transcription accessory protein (S1 RNA-binding domain) CBSS-243265.1.peg.198;
Cell division-ribosomal stress proteins cluster;
Transcription factors bacterial
fig|6666666.229934.peg.115 CDS CP012958.1 110165 108708 -2 - 1458 L-xylulose/3-keto-L-gulonate kinase (EC 2.7.1.-) L-ascorbate utilization (and related gene clusters)
fig|6666666.229934.peg.116 CDS CP012958.1 111199 110171 -1 - 1029 Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229934.peg.117 CDS CP012958.1 111093 111218 3 + 126 hypothetical protein - none -
fig|6666666.229934.peg.118 CDS CP012958.1 112702 111215 -1 - 1488 Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229934.peg.119 CDS CP012958.1 112865 113806 2 + 942 Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229934.peg.120 CDS CP012958.1 115060 113876 -1 - 1185 Translation elongation factor Tu Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Translation elongation factors bacterial;
Universal GTPases
fig|6666666.229934.peg.121 CDS CP012958.1 115794 116708 3 + 915 Pantothenate kinase (EC 2.7.1.33) Coenzyme A Biosynthesis
fig|6666666.229934.peg.122 CDS CP012958.1 119183 116763 -2 - 2421 DNA gyrase subunit B (EC 5.99.1.3) Cell Division Subsystem including YidCD;
DNA gyrase subunits;
DNA replication cluster 1;
DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.229934.peg.123 CDS CP012958.1 121169 119280 -2 - 1890 ATP-dependent DNA helicase RecQ DNA repair, bacterial RecFOR pathway
fig|6666666.229934.peg.124 CDS CP012958.1 121480 121166 -1 - 315 Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly Biogenesis of cytochrome c oxidases
fig|6666666.229934.peg.125 CDS CP012958.1 121603 121722 1 + 120 hypothetical protein - none -
fig|6666666.229934.peg.126 CDS CP012958.1 121740 122990 3 + 1251 Diaminopimelate decarboxylase (EC 4.1.1.20) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229934.peg.127 CDS CP012958.1 123648 123043 -3 - 606 probable integral membrane protein Cj0014c - none -
fig|6666666.229934.peg.128 CDS CP012958.1 123847 124407 1 + 561 DNA-3-methyladenine glycosylase (EC 3.2.2.20) CBSS-326442.4.peg.1852;
DNA Repair Base Excision
fig|6666666.229934.peg.129 CDS CP012958.1 124473 126815 3 + 2343 Outer membrane protein Imp, required for envelope biogenesis / Organic solvent tolerance protein precursor Lipopolysaccharide assembly
fig|6666666.229934.peg.130 CDS CP012958.1 127371 126907 -3 - 465 Xanthine-guanine phosphoribosyltransferase (EC 2.4.2.22) Purine conversions
fig|6666666.229934.peg.131 CDS CP012958.1 127486 128943 1 + 1458 Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3) Dipeptidases (EC 3.4.13.-);
Recycling of Peptidoglycan Amino Acids
fig|6666666.229934.peg.132 CDS CP012958.1 129778 129023 -1 - 756 Short chain dehydrogenase - none -
fig|6666666.229934.peg.133 CDS CP012958.1 130384 129872 -1 - 513 Molybdopterin-guanine dinucleotide biosynthesis protein MobB Molybdenum cofactor biosynthesis;
ar-431-EC Molybdopterin-guanine dinucleotide biosynthesis
fig|6666666.229934.peg.134 CDS CP012958.1 130902 130465 -3 - 438 Sigma factor RpoE regulatory protein RseC Transcription initiation, bacterial sigma factors
fig|6666666.229934.peg.135 CDS CP012958.1 131868 130912 -3 - 957 Sigma factor RpoE negative regulatory protein RseB precursor Periplasmic Stress Response;
Transcription initiation, bacterial sigma factors
fig|6666666.229934.peg.136 CDS CP012958.1 132535 131951 -1 - 585 Sigma factor RpoE negative regulatory protein RseA Periplasmic Stress Response;
Transcription initiation, bacterial sigma factors
fig|6666666.229934.peg.137 CDS CP012958.1 133149 132574 -3 - 576 RNA polymerase sigma factor RpoE Transcription initiation, bacterial sigma factors
fig|6666666.229934.peg.138 CDS CP012958.1 133536 133282 -3 - 255 YgfY COG2938 - none -
fig|6666666.229934.peg.139 CDS CP012958.1 133764 133576 -3 - 189 Ethidium bromide-methyl viologen resistance protein EmrE - none -
fig|6666666.229934.peg.140 CDS CP012958.1 135564 133849 -3 - 1716 Prolyl-tRNA synthetase (EC 6.1.1.15), bacterial type tRNA aminoacylation, Pro
fig|6666666.229934.peg.141 CDS CP012958.1 135708 137102 3 + 1395 L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1) Selenocysteine metabolism
fig|6666666.229934.peg.142 CDS CP012958.1 137099 138958 2 + 1860 Selenocysteine-specific translation elongation factor Selenocysteine metabolism
fig|6666666.229934.peg.143 CDS CP012958.1 139004 139906 2 + 903 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit - none -
fig|6666666.229934.peg.144 CDS CP012958.1 140256 139945 -3 - 312 Membrane protein, MgtC/SapB family - none -
fig|6666666.229934.peg.145 CDS CP012958.1 140672 140397 -2 - 276 tRNA pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses;
tRNA modification Archaea;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229934.peg.146 CDS CP012958.1 141088 142590 1 + 1503 Sodium-dependent transporter - none -
fig|6666666.229934.peg.147 CDS CP012958.1 143414 143530 2 + 117 hypothetical protein - none -
fig|6666666.229934.peg.148 CDS CP012958.1 143574 143810 3 + 237 Mobile element protein - none -
fig|6666666.229934.peg.149 CDS CP012958.1 146432 144786 -2 - 1647 Protein TadG, associated with Flp pilus assembly Widespread colonization island
fig|6666666.229934.peg.150 CDS CP012958.1 146765 146448 -2 - 318 Flp pilus assembly surface protein TadF, ATP/GTP-binding motif Widespread colonization island
fig|6666666.229934.peg.151 CDS CP012958.1 148447 147686 -1 - 762 Flp pilus assembly protein TadD, contains TPR repeat Widespread colonization island
fig|6666666.229934.peg.152 CDS CP012958.1 149300 148437 -2 - 864 Type II/IV secretion system protein TadC, associated with Flp pilus assembly Widespread colonization island
fig|6666666.229934.peg.153 CDS CP012958.1 150187 149297 -1 - 891 Flp pilus assembly protein TadB Widespread colonization island
fig|6666666.229934.peg.154 CDS CP012958.1 151467 150187 -3 - 1281 Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily Widespread colonization island
fig|6666666.229934.peg.155 CDS CP012958.1 152605 151481 -1 - 1125 Type II/IV secretion system ATPase TadZ/CpaE, associated with Flp pilus assembly Widespread colonization island
fig|6666666.229934.peg.156 CDS CP012958.1 153124 152621 -1 - 504 Flp pilus assembly protein RcpB Widespread colonization island
fig|6666666.229934.peg.157 CDS CP012958.1 154440 153121 -3 - 1320 Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly Widespread colonization island
fig|6666666.229934.peg.158 CDS CP012958.1 155329 154505 -1 - 825 Flp pilus assembly protein RcpC/CpaB Widespread colonization island
fig|6666666.229934.peg.159 CDS CP012958.1 155557 155381 -1 - 177 Type IV prepilin peptidase TadV/CpaA Widespread colonization island
fig|6666666.229934.peg.160 CDS CP012958.1 156354 156181 -3 - 174 Flp pilus assembly protein, pilin Flp Widespread colonization island
fig|6666666.229934.peg.161 CDS CP012958.1 157104 157568 3 + 465 Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly CBSS-56780.10.peg.1536;
Glycyl-tRNA synthetase containing cluster;
tRNA-methylthiotransferase containing cluster
fig|6666666.229934.peg.162 CDS CP012958.1 157738 158439 1 + 702 unknown - none -
fig|6666666.229934.peg.163 CDS CP012958.1 158443 160365 1 + 1923 Predicted P-loop ATPase fused to an acetyltransferase COG1444 tRNA modification Archaea;
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229934.peg.164 CDS CP012958.1 160406 160579 2 + 174 hypothetical protein - none -
fig|6666666.229934.peg.165 CDS CP012958.1 160971 164492 3 + 3522 Transcription-repair coupling factor Cell division-ribosomal stress proteins cluster;
Transcription factors bacterial;
Transcription repair cluster
fig|6666666.229934.peg.166 CDS CP012958.1 164594 165178 2 + 585 Phosphoheptose isomerase 1 (EC 5.3.1.-) Capsular heptose biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.229934.peg.167 CDS CP012958.1 165319 166053 1 + 735 Arginine ABC transporter, ATP-binding protein ArtP Arginine and Ornithine Degradation
fig|6666666.229934.peg.168 CDS CP012958.1 166074 166793 3 + 720 Arginine ABC transporter, periplasmic arginine-binding protein ArtI Arginine and Ornithine Degradation
fig|6666666.229934.peg.169 CDS CP012958.1 166798 167460 1 + 663 Arginine ABC transporter, permease protein ArtQ Arginine and Ornithine Degradation
fig|6666666.229934.peg.170 CDS CP012958.1 167460 168146 3 + 687 Arginine ABC transporter, permease protein ArtM Arginine and Ornithine Degradation
fig|6666666.229934.peg.171 CDS CP012958.1 168503 168381 -2 - 123 hypothetical protein - none -
fig|6666666.229934.peg.172 CDS CP012958.1 168686 170284 2 + 1599 Carbon starvation protein A Carbon Starvation
fig|6666666.229934.peg.173 CDS CP012958.1 170547 171005 3 + 459 Cell division protein MraZ 16S rRNA modification within P site of ribosome;
Bacterial Cell Division;
Bacterial Cytoskeleton
fig|6666666.229934.peg.174 CDS CP012958.1 171115 172083 1 + 969 rRNA small subunit methyltransferase H 16S rRNA modification within P site of ribosome;
Bacterial Cell Division
fig|6666666.229934.peg.175 CDS CP012958.1 172083 172400 3 + 318 Cell division protein FtsL 16S rRNA modification within P site of ribosome;
Bacterial Cell Division;
Bacterial Cytoskeleton;
Stationary phase repair cluster
fig|6666666.229934.peg.176 CDS CP012958.1 172418 174241 2 + 1824 Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129) 16S rRNA modification within P site of ribosome;
Bacterial Cell Division;
Bacterial Cytoskeleton;
CBSS-83331.1.peg.3039;
Peptidoglycan Biosynthesis
fig|6666666.229934.peg.177 CDS CP012958.1 174259 175725 1 + 1467 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo
fig|6666666.229934.peg.178 CDS CP012958.1 175732 177111 1 + 1380 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase (EC 6.3.2.10) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo
fig|6666666.229934.peg.179 CDS CP012958.1 177105 178190 3 + 1086 Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC 2.7.8.13) Peptidoglycan Biosynthesis
fig|6666666.229934.peg.180 CDS CP012958.1 178217 179521 2 + 1305 UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC 6.3.2.9) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo
fig|6666666.229934.peg.181 CDS CP012958.1 179536 180726 1 + 1191 Cell division protein FtsW Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ
fig|6666666.229934.peg.182 CDS CP012958.1 180767 181831 2 + 1065 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) Peptidoglycan Biosynthesis;
cell division core of larger cluster
fig|6666666.229934.peg.183 CDS CP012958.1 181902 183332 3 + 1431 UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo;
cell division cluster containing FtsQ
fig|6666666.229934.peg.184 CDS CP012958.1 183345 184274 3 + 930 D-alanine--D-alanine ligase (EC 6.3.2.4) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo;
cell division cluster containing FtsQ
fig|6666666.229934.peg.185 CDS CP012958.1 184271 185038 2 + 768 Cell division protein FtsQ Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ;
cell division core of larger cluster
fig|6666666.229934.peg.186 CDS CP012958.1 185063 186343 2 + 1281 Cell division protein FtsA Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ;
cell division core of larger cluster
fig|6666666.229934.peg.187 CDS CP012958.1 186427 187710 1 + 1284 Cell division protein FtsZ (EC 3.4.24.-) Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ;
cell division core of larger cluster
fig|6666666.229934.peg.188 CDS CP012958.1 187748 188665 2 + 918 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC 3.5.1.108) KDO2-Lipid A biosynthesis
fig|6666666.229934.peg.189 CDS CP012958.1 188863 190023 1 + 1161 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) Chorismate Synthesis;
Chorismate Synthesis;
Phenylalanine and Tyrosine Branches from Chorismate;
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229934.peg.190 CDS CP012958.1 190157 192037 2 + 1881 Chaperone protein HtpG Protein chaperones
fig|6666666.229934.peg.191 CDS CP012958.1 192103 192447 1 + 345 FIG138056: a glutathione-dependent thiol reductase A Glutathione-dependent Thiol Reductase Associated with a Step in Lysine Biosynthesis;
CBSS-584.1.peg.1352
fig|6666666.229934.peg.192 CDS CP012958.1 192584 193717 2 + 1134 N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18) A Glutathione-dependent Thiol Reductase Associated with a Step in Lysine Biosynthesis;
CBSS-584.1.peg.1352;
Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229934.peg.193 CDS CP012958.1 193719 194399 3 + 681 FIG009095: D,D-carboxypeptidase family protein CBSS-584.1.peg.1352
fig|6666666.229934.peg.194 CDS CP012958.1 194645 195268 2 + 624 ADP-ribose pyrophosphatase (EC 3.6.1.13) CBSS-216591.1.peg.168;
NAD and NADP cofactor biosynthesis global;
Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229934.peg.195 CDS CP012958.1 195319 196143 1 + 825 3@1,5@1-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17) cAMP signaling in bacteria
fig|6666666.229934.peg.196 CDS CP012958.1 196243 196422 1 + 180 hypothetical protein - none -
fig|6666666.229934.peg.197 CDS CP012958.1 197478 196654 -3 - 825 FIG00711691: hypothetical protein - none -
fig|6666666.229934.peg.198 CDS CP012958.1 197915 197451 -2 - 465 FIG00710847: hypothetical protein - none -
fig|6666666.229934.peg.199 CDS CP012958.1 198099 198236 3 + 138 Queuosine Biosynthesis QueC ATPase Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229934.peg.200 CDS CP012958.1 198270 198968 3 + 699 Queuosine Biosynthesis QueC ATPase Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229934.peg.201 CDS CP012958.1 199093 200307 1 + 1215 ATPase component BioM of energizing module of biotin ECF transporter Biotin biosynthesis;
Biotin synthesis cluster;
ECF class transporters
fig|6666666.229934.peg.202 CDS CP012958.1 201414 200386 -3 - 1029 Alcohol dehydrogenase (EC 1.1.1.1) 5-FCL-like protein;
Butanol Biosynthesis;
Fermentations: Mixed acid;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229934.peg.203 CDS CP012958.1 201685 203832 1 + 2148 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) RNA methylation
fig|6666666.229934.peg.204 CDS CP012958.1 204273 203929 -3 - 345 Fumarate reductase subunit D Succinate dehydrogenase
fig|6666666.229934.peg.205 CDS CP012958.1 204675 204283 -3 - 393 Fumarate reductase subunit C Succinate dehydrogenase
fig|6666666.229934.peg.206 CDS CP012958.1 205457 204687 -2 - 771 Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) 5-FCL-like protein;
Serine-glyoxylate cycle;
Succinate dehydrogenase;
TCA Cycle
fig|6666666.229934.peg.207 CDS CP012958.1 207270 205462 -3 - 1809 Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) Serine-glyoxylate cycle;
Succinate dehydrogenase;
TCA Cycle
fig|6666666.229934.peg.208 CDS CP012958.1 207578 208549 2 + 972 Translation elongation factor P Lys34:lysine transferase Translation elongation factor P lysylation
fig|6666666.229934.peg.209 CDS CP012958.1 209382 208615 -3 - 768 Iron(III) dicitrate transport ATP-binding protein FecE (TC 3.A.1.14.1) - none -
fig|6666666.229934.peg.210 CDS CP012958.1 210365 209382 -2 - 984 Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1) - none -
fig|6666666.229934.peg.211 CDS CP012958.1 211354 210365 -1 - 990 Iron(III) dicitrate transport system permease protein FecC (TC 3.A.1.14.1) - none -
fig|6666666.229934.peg.212 CDS CP012958.1 212247 211354 -3 - 894 Iron(III) dicitrate transport system, periplasmic iron-binding protein FecB (TC 3.A.1.14.1) - none -
fig|6666666.229934.peg.213 CDS CP012958.1 213388 212318 -1 - 1071 Phosphoesterase (EC 3.1.-.-) - none -
fig|6666666.229934.peg.214 CDS CP012958.1 213459 213902 3 + 444 FIG000557: hypothetical protein co-occurring with RecR DNA processing cluster
fig|6666666.229934.peg.215 CDS CP012958.1 213987 214589 3 + 603 Recombination protein RecR DNA processing cluster;
DNA repair, bacterial RecFOR pathway
fig|6666666.229934.peg.216 CDS CP012958.1 214621 216558 1 + 1938 DNA topoisomerase III (EC 5.99.1.2) DNA processing cluster;
DNA topoisomerases, Type I, ATP-independent
fig|6666666.229934.peg.217 CDS CP012958.1 216572 216703 2 + 132 hypothetical protein - none -
fig|6666666.229934.peg.218 CDS CP012958.1 216731 217069 2 + 339 Preprotein translocase subunit SecG (TC 3.A.5.1.1) CBSS-331978.3.peg.2915;
Murein hydrolase regulation and cell death
fig|6666666.229934.peg.219 CDS CP012958.1 217253 217507 2 + 255 hypothetical protein - none -
fig|6666666.229934.peg.220 CDS CP012958.1 218537 217764 -2 - 774 Monofunctional biosynthetic peptidoglycan transglycosylase (EC 2.4.2.-) Peptidoglycan Biosynthesis
fig|6666666.229934.peg.221 CDS CP012958.1 218823 218515 -3 - 309 Transcriptional repressor protein TrpR Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate);
Tryptophan synthesis
fig|6666666.229934.peg.222 CDS CP012958.1 221072 218856 -2 - 2217 Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) Murein Hydrolases
fig|6666666.229934.peg.223 CDS CP012958.1 221895 221599 -3 - 297 YciL protein Broadly distributed proteins not in subsystems;
CBSS-211586.9.peg.2729
fig|6666666.229934.peg.224 CDS CP012958.1 222368 221898 -2 - 471 Acyl-CoA thioesterase YciA, involved in membrane biogenesis CBSS-211586.9.peg.2729;
Intracellular septation in Enterobacteria
fig|6666666.229934.peg.225 CDS CP012958.1 222923 222372 -2 - 552 Intracellular septation protein IspA CBSS-211586.9.peg.2729;
Intracellular septation in Enterobacteria
fig|6666666.229934.peg.226 CDS CP012958.1 223687 222929 -1 - 759 Membrane protein involved in the export of O-antigen and teichoic acid - none -
fig|6666666.229934.peg.227 CDS CP012958.1 223873 223721 -1 - 153 hypothetical protein - none -
fig|6666666.229934.peg.228 CDS CP012958.1 223959 224606 3 + 648 Outer membrane protein W precursor - none -
fig|6666666.229934.peg.229 CDS CP012958.1 226300 224624 -1 - 1677 DNA repair protein RecN DNA repair, bacterial
fig|6666666.229934.peg.230 CDS CP012958.1 227291 226374 -2 - 918 NAD kinase (EC 2.7.1.23) NAD and NADP cofactor biosynthesis global
fig|6666666.229934.peg.231 CDS CP012958.1 227476 227336 -1 - 141 hypothetical protein - none -
fig|6666666.229934.peg.232 CDS CP012958.1 227432 228010 2 + 579 Heat shock protein GrpE GroEL GroES;
Heat shock dnaK gene cluster extended;
Protein chaperones
fig|6666666.229934.peg.233 CDS CP012958.1 231192 228121 -3 - 3072 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229934.peg.234 CDS CP012958.1 233400 231382 -3 - 2019 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) CBSS-354.1.peg.876;
RNA methylation;
Riboflavin, FMN and FAD metabolism in plants;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229934.peg.235 CDS CP012958.1 233570 234790 2 + 1221 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41) Fatty Acid Biosynthesis FASII
fig|6666666.229934.peg.236 CDS CP012958.1 234905 234771 -2 - 135 hypothetical protein - none -
fig|6666666.229934.peg.237 CDS CP012958.1 234931 236778 1 + 1848 Aerobic respiration control sensor protein arcB (EC 2.7.3.-) - none -
fig|6666666.229934.peg.238 CDS CP012958.1 237862 236852 -1 - 1011 Galactose/methyl galactoside ABC transport system, permease protein MglC (TC 3.A.1.2.3) Lactose and Galactose Uptake and Utilization
fig|6666666.229934.peg.239 CDS CP012958.1 239041 237881 -1 - 1161 Galactose/methyl galactoside ABC transport system, ATP-binding protein MglA (EC 3.6.3.17) Lactose and Galactose Uptake and Utilization
fig|6666666.229934.peg.240 CDS CP012958.1 239419 239072 -1 - 348 Galactose/methyl galactoside ABC transport system, ATP-binding protein MglA (EC 3.6.3.17) Lactose and Galactose Uptake and Utilization
fig|6666666.229934.peg.241 CDS CP012958.1 240486 239494 -3 - 993 Galactose/methyl galactoside ABC transport system, D-galactose-binding periplasmic protein MglB (TC 3.A.1.2.3) Bacterial Chemotaxis;
Lactose and Galactose Uptake and Utilization
fig|6666666.229934.peg.242 CDS CP012958.1 241714 240701 -1 - 1014 Galactose operon repressor, GalR-LacI family of transcriptional regulators Lactose and Galactose Uptake and Utilization
fig|6666666.229934.peg.243 CDS CP012958.1 241966 243009 1 + 1044 Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10) Lactose and Galactose Uptake and Utilization
fig|6666666.229934.peg.244 CDS CP012958.1 243076 244230 1 + 1155 Galactokinase (EC 2.7.1.6) Lactose and Galactose Uptake and Utilization
fig|6666666.229934.peg.245 CDS CP012958.1 244224 245255 3 + 1032 Aldose 1-epimerase (EC 5.1.3.3) Lactose and Galactose Uptake and Utilization;
Maltose and Maltodextrin Utilization
fig|6666666.229934.peg.246 CDS CP012958.1 247019 245520 -2 - 1500 Putative ATP /GTP binding protein - none -
fig|6666666.229934.peg.247 CDS CP012958.1 248731 247298 -1 - 1434 2-oxoglutarate/malate translocator - none -
fig|6666666.229934.peg.248 CDS CP012958.1 250130 248718 -2 - 1413 2-(5@1@1-triphosphoribosyl)-3@1-dephosphocoenzyme-A synthase (EC 2.7.8.25) Citrate Metabolism, Transport, and Regulation
fig|6666666.229934.peg.249 CDS CP012958.1 251826 250324 -3 - 1503 Citrate lyase alpha chain (EC 4.1.3.6) Citrate Metabolism, Transport, and Regulation
fig|6666666.229934.peg.250 CDS CP012958.1 252716 251841 -2 - 876 Citrate lyase beta chain (EC 4.1.3.6) Citrate Metabolism, Transport, and Regulation
fig|6666666.229934.peg.251 CDS CP012958.1 253000 252713 -1 - 288 Citrate lyase gamma chain, acyl carrier protein (EC 4.1.3.6) Citrate Metabolism, Transport, and Regulation;
TCA Cycle
fig|6666666.229934.peg.252 CDS CP012958.1 254047 253040 -1 - 1008 [Citrate [pro-3S]-lyase] ligase (EC 6.2.1.22) Citrate Metabolism, Transport, and Regulation
fig|6666666.229934.peg.253 CDS CP012958.1 254213 254085 -2 - 129 hypothetical protein - none -
fig|6666666.229934.peg.254 CDS CP012958.1 254293 255189 1 + 897 Magnesium and cobalt efflux protein CorC CBSS-56780.10.peg.1536;
Copper homeostasis: copper tolerance;
Glycyl-tRNA synthetase containing cluster;
Magnesium transport;
tRNA-methylthiotransferase containing cluster
fig|6666666.229934.peg.255 CDS CP012958.1 255580 257124 1 + 1545 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE Copper homeostasis: copper tolerance;
Lipoprotein Biosynthesis;
tRNA-methylthiotransferase containing cluster;
tRNA-methylthiotransferase containing cluster
fig|6666666.229934.peg.256 CDS CP012958.1 257405 257187 -2 - 219 Translation initiation factor 1 Translation initiation factors bacterial
fig|6666666.229934.peg.257 CDS CP012958.1 257460 257582 3 + 123 hypothetical protein - none -
fig|6666666.229934.peg.258 CDS CP012958.1 257625 258932 3 + 1308 Peptidase B (EC 3.4.11.23) Aminopeptidases (EC 3.4.11.-)
fig|6666666.229934.peg.259 CDS CP012958.1 258944 259369 2 + 426 Nucleoside diphosphate kinase (EC 2.7.4.6) CBSS-498211.3.peg.1415;
Purine conversions;
pyrimidine conversions
fig|6666666.229934.peg.260 CDS CP012958.1 259505 260650 2 + 1146 Beta-hexosaminidase (EC 3.2.1.52) Chitin and N-acetylglucosamine utilization
fig|6666666.229934.peg.261 CDS CP012958.1 260643 260762 3 + 120 hypothetical protein - none -
fig|6666666.229934.peg.262 CDS CP012958.1 261852 260740 -3 - 1113 Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like Scaffold proteins for [4Fe-4S] cluster assembly (MRP family)
fig|6666666.229934.peg.263 CDS CP012958.1 262025 264085 2 + 2061 Methionyl-tRNA synthetase (EC 6.1.1.10) Scaffold proteins for [4Fe-4S] cluster assembly (MRP family);
tRNA aminoacylation, Met
fig|6666666.229934.peg.264 CDS CP012958.1 264413 264219 -2 - 195 Believed to be involved in assembly of Fe-S clusters tRNA modification Bacteria
fig|6666666.229934.peg.265 CDS CP012958.1 264754 264413 -1 - 342 Ferredoxin, 2Fe-2S Alanine biosynthesis;
Soluble cytochromes and functionally related electron carriers;
tRNA modification Bacteria
fig|6666666.229934.peg.266 CDS CP012958.1 266625 264766 -3 - 1860 Chaperone protein HscA Alanine biosynthesis;
Protein chaperones;
tRNA modification Bacteria
fig|6666666.229934.peg.267 CDS CP012958.1 267167 266646 -2 - 522 Chaperone protein HscB Protein chaperones;
tRNA modification Bacteria
fig|6666666.229934.peg.268 CDS CP012958.1 267502 267179 -1 - 324 Iron binding protein IscA for iron-sulfur cluster assembly Alanine biosynthesis;
tRNA modification Bacteria
fig|6666666.229934.peg.269 CDS CP012958.1 268017 267634 -3 - 384 Iron-sulfur cluster assembly scaffold protein IscU Alanine biosynthesis;
tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229934.peg.270 CDS CP012958.1 269291 268077 -2 - 1215 Cysteine desulfurase (EC 2.8.1.7), IscS subfamily Alanine biosynthesis;
Thiamin biosynthesis;
mnm5U34 biosynthesis bacteria;
tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229934.peg.271 CDS CP012958.1 269818 269345 -1 - 474 Iron-sulfur cluster regulator IscR Alanine biosynthesis;
Rrf2 family transcriptional regulators
fig|6666666.229934.peg.272 CDS CP012958.1 270620 269880 -2 - 741 tRNA:Cm32/Um32 methyltransferase RNA methylation;
tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229934.peg.273 CDS CP012958.1 270771 271571 3 + 801 Inositol-1-monophosphatase (EC 3.1.3.25) - none -
fig|6666666.229934.peg.274 CDS CP012958.1 273735 271624 -3 - 2112 unknown - none -
fig|6666666.229934.peg.275 CDS CP012958.1 275060 274014 -2 - 1047 Fe(3+) ions import ATP-binding protein fbpC (EC 3.6.3.30) - none -
fig|6666666.229934.peg.276 CDS CP012958.1 277133 275076 -2 - 2058 Ferric iron ABC transporter, permease protein Iron acquisition in Streptococcus
fig|6666666.229934.peg.277 CDS CP012958.1 277913 277161 -2 - 753 Ferric iron ABC transporter, iron-binding protein Iron acquisition in Streptococcus
fig|6666666.229934.peg.278 CDS CP012958.1 279406 278366 -1 - 1041 Ferric iron ABC transporter, iron-binding protein Iron acquisition in Streptococcus
fig|6666666.229934.peg.279 CDS CP012958.1 279715 280365 1 + 651 Uridine kinase (EC 2.7.1.48) [C1] pyrimidine conversions
fig|6666666.229934.peg.280 CDS CP012958.1 280375 280959 1 + 585 Deoxycytidine triphosphate deaminase (EC 3.5.4.13) pyrimidine conversions
fig|6666666.229934.peg.281 CDS CP012958.1 280960 282162 1 + 1203 FIG00696476: hypothetical protein - none -
fig|6666666.229934.peg.282 CDS CP012958.1 282164 283360 2 + 1197 Sugar efflux transporter SotB - none -
fig|6666666.229934.peg.283 CDS CP012958.1 284962 283430 -1 - 1533 GTP-binding protein EngA CBSS-290633.1.peg.1906;
CBSS-498211.3.peg.1415;
Universal GTPases
fig|6666666.229934.peg.284 CDS CP012958.1 285250 286233 1 + 984 DnaJ-class molecular chaperone CbpA Protein chaperones
fig|6666666.229934.peg.285 CDS CP012958.1 286256 286546 2 + 291 hypothetical protein - none -
fig|6666666.229934.peg.286 CDS CP012958.1 287909 286611 -2 - 1299 Adenylosuccinate synthetase (EC 6.3.4.4) Purine conversions
fig|6666666.229934.peg.287 CDS CP012958.1 288962 287997 -2 - 966 tRNA (5-methoxyuridine) 34 synthase tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229934.peg.288 CDS CP012958.1 290496 288976 -3 - 1521 Proline/sodium symporter PutP (TC 2.A.21.2.1) @ Propionate/sodium symporter - none -
fig|6666666.229934.peg.289 CDS CP012958.1 290635 292110 1 + 1476 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) Bacterial Cell Division;
CBSS-354.1.peg.2917;
RNA processing and degradation, bacterial
fig|6666666.229934.peg.290 CDS CP012958.1 292275 292874 3 + 600 Glutaredoxin 2 Glutaredoxins;
Glutathione: Redox cycle
fig|6666666.229934.peg.291 CDS CP012958.1 292890 293588 3 + 699 NAD-dependent protein deacetylase of SIR2 family Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229934.peg.292 CDS CP012958.1 293661 294035 3 + 375 Mobile element protein - none -
fig|6666666.229934.peg.293 CDS CP012958.1 294648 294514 -3 - 135 hypothetical protein - none -
fig|6666666.229934.peg.294 CDS CP012958.1 295078 294650 -1 - 429 Inner membrane protein forms channel for type IV secretion of T-DNA complex, VirB8 - none -
fig|6666666.229934.peg.295 CDS CP012958.1 295332 295093 -3 - 240 hypothetical protein - none -
fig|6666666.229934.peg.296 CDS CP012958.1 295651 295481 -1 - 171 hypothetical protein - none -
fig|6666666.229934.peg.297 CDS CP012958.1 296005 296124 1 + 120 Haemophilus-specific protein, uncharacterized - none -
fig|6666666.229934.peg.298 CDS CP012958.1 296438 296617 2 + 180 hypothetical protein - none -
fig|6666666.229934.peg.299 CDS CP012958.1 297188 297442 2 + 255 hypothetical protein - none -
fig|6666666.229934.peg.300 CDS CP012958.1 297445 297789 1 + 345 Programmed cell death toxin MazF - none -
fig|6666666.229934.peg.301 CDS CP012958.1 297873 298139 3 + 267 Virulence plasmid protein - none -
fig|6666666.229934.peg.302 CDS CP012958.1 298143 298304 3 + 162 hypothetical protein - none -
fig|6666666.229934.peg.303 CDS CP012958.1 298358 299026 2 + 669 Cytolethal distending toxin subunit A Cytolethal distending toxin of Campylobacter jejuni;
Cytolethal distending toxins
fig|6666666.229934.peg.304 CDS CP012958.1 299041 299892 1 + 852 Cytolethal distending toxin subunit B Cytolethal distending toxin of Campylobacter jejuni;
Cytolethal distending toxins
fig|6666666.229934.peg.305 CDS CP012958.1 299903 300463 2 + 561 Cytolethal distending toxin subunit C Cytolethal distending toxin of Campylobacter jejuni;
Cytolethal distending toxins
fig|6666666.229934.peg.306 CDS CP012958.1 302248 301988 -1 - 261 FIG141751: hypothetical protein in PFGI-1-like cluster - none -
fig|6666666.229934.peg.307 CDS CP012958.1 303038 302262 -2 - 777 Chromosome partitioning ATPase in PFGI-1-like cluster, ParA-like - none -
fig|6666666.229934.peg.308 CDS CP012958.1 304122 303565 -3 - 558 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229934.peg.309 CDS CP012958.1 304377 305567 3 + 1191 Cystathionine beta-lyase (EC 4.4.1.8) Methionine Biosynthesis
fig|6666666.229934.peg.310 CDS CP012958.1 305781 306833 3 + 1053 Outer membrane protein P2 precursor (OMP P2) - none -
fig|6666666.229934.peg.311 CDS CP012958.1 306977 307126 2 + 150 hypothetical protein - none -
fig|6666666.229934.peg.312 CDS CP012958.1 307186 307347 1 + 162 Programmed cell death toxin ChpB - none -
fig|6666666.229934.peg.313 CDS CP012958.1 308552 307425 -2 - 1128 Chaperone protein DnaJ GroEL GroES;
Heat shock dnaK gene cluster extended;
Protein chaperones
fig|6666666.229934.peg.314 CDS CP012958.1 310889 308988 -2 - 1902 Chaperone protein DnaK GroEL GroES;
Heat shock dnaK gene cluster extended;
Protein chaperones
fig|6666666.229934.peg.315 CDS CP012958.1 311175 312608 3 + 1434 Putative GTP-binding protein YdgA - none -
fig|6666666.229934.peg.316 CDS CP012958.1 314701 312968 -1 - 1734 Arginyl-tRNA synthetase (EC 6.1.1.19) tRNA aminoacylation, Arg
fig|6666666.229934.peg.317 CDS CP012958.1 314798 315385 2 + 588 Protein yecM - none -
fig|6666666.229934.peg.318 CDS CP012958.1 315427 315882 1 + 456 Outer membrane lipoprotein - none -
fig|6666666.229934.peg.319 CDS CP012958.1 316022 317104 2 + 1083 Peptide chain release factor 1 A Gammaproteobacteria Cluster Relating to Translation;
CBSS-216600.3.peg.802;
Translation termination factors bacterial;
YrdC-YciO-Sua5 protein family
fig|6666666.229934.peg.320 CDS CP012958.1 317144 318043 2 + 900 Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2 A Gammaproteobacteria Cluster Relating to Translation;
CBSS-216600.3.peg.802;
Translation termination factors bacterial;
YrdC-YciO-Sua5 protein family
fig|6666666.229934.peg.321 CDS CP012958.1 318053 318907 2 + 855 2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase (EC 2.5.1.55) A Gammaproteobacteria Cluster Relating to Translation;
KDO2-Lipid A biosynthesis
fig|6666666.229934.peg.322 CDS CP012958.1 319087 319596 1 + 510 probable lipoprotein NlpC - none -
fig|6666666.229934.peg.323 CDS CP012958.1 320244 319993 -3 - 252 Protein YcgL CBSS-243277.1.peg.4359
fig|6666666.229934.peg.324 CDS CP012958.1 320328 320990 3 + 663 Septum site-determining protein MinC Bacterial Cell Division;
Bacterial Cytoskeleton;
Septum site-determining cluster Min
fig|6666666.229934.peg.325 CDS CP012958.1 321557 321012 -2 - 546 FIG00696317: hypothetical protein - none -
fig|6666666.229934.peg.326 CDS CP012958.1 322248 321781 -3 - 468 Phosphohistidine phosphatase SixA - none -
fig|6666666.229934.peg.327 CDS CP012958.1 323598 322261 -3 - 1338 Phosphoglucosamine mutase (EC 5.4.2.10) Sialic Acid Metabolism;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229934.peg.328 CDS CP012958.1 324403 323627 -1 - 777 Dihydropteroate synthase (EC 2.5.1.15) Folate Biosynthesis;
Folate biosynthesis cluster
fig|6666666.229934.peg.329 CDS CP012958.1 325565 324624 -2 - 942 DNA polymerase IV (EC 2.7.7.7) DNA repair, bacterial
fig|6666666.229934.peg.330 CDS CP012958.1 326233 325589 -1 - 645 Mobile element protein - none -
fig|6666666.229934.peg.331 CDS CP012958.1 326442 326735 3 + 294 hypothetical protein - none -
fig|6666666.229934.peg.332 CDS CP012958.1 326737 327474 1 + 738 Zeta toxin - none -
fig|6666666.229934.peg.333 CDS CP012958.1 328257 328511 3 + 255 Mobile element protein - none -
fig|6666666.229934.peg.334 CDS CP012958.1 330183 328717 -3 - 1467 Inosine-5@1-monophosphate dehydrogenase (EC 1.1.1.205) Purine conversions;
Purine salvage cluster
fig|6666666.229934.peg.335 CDS CP012958.1 330325 331257 1 + 933 Biotin operon repressor / Biotin-protein ligase (EC 6.3.4.15) Biotin biosynthesis;
Biotin biosynthesis;
Biotin synthesis cluster;
Biotin synthesis cluster
fig|6666666.229934.peg.336 CDS CP012958.1 331344 331547 3 + 204 Osmotically inducible lipoprotein B precursor Osmotic stress cluster
fig|6666666.229934.peg.338 CDS CP012958.1 338219 337401 -2 - 819 Peptide transport system ATP-binding protein SapF - none -
fig|6666666.229934.peg.339 CDS CP012958.1 339275 338223 -2 - 1053 Peptide transport system ATP-binding protein SapD - none -
fig|6666666.229934.peg.340 CDS CP012958.1 340170 339283 -3 - 888 Peptide transport system permease protein SapC - none -
fig|6666666.229934.peg.341 CDS CP012958.1 341125 340160 -1 - 966 Peptide transport system permease protein SapB - none -
fig|6666666.229934.peg.342 CDS CP012958.1 342756 341125 -3 - 1632 Peptide transport periplasmic protein sapA (TC 3.A.1.5.5) - none -
fig|6666666.229934.peg.343 CDS CP012958.1 343022 344437 2 + 1416 Conserved protein YcjX with nucleoside triphosphate hydrolase domain A conserved operon linked to TyrR and possibly involved in virulence
fig|6666666.229934.peg.344 CDS CP012958.1 344451 345530 3 + 1080 Membrane protein YcjF A conserved operon linked to TyrR and possibly involved in virulence
fig|6666666.229934.peg.345 CDS CP012958.1 345614 346573 2 + 960 Transcriptional repressor protein TyrR Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate);
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229934.peg.346 CDS CP012958.1 346704 346570 -3 - 135 hypothetical protein - none -
fig|6666666.229934.peg.347 CDS CP012958.1 346938 346789 -3 - 150 GTP-binding protein HflX Hfl operon;
Universal GTPases
fig|6666666.229934.peg.348 CDS CP012958.1 347249 346953 -2 - 297 RNA-binding protein Hfq Hfl operon;
Polyadenylation bacterial
fig|6666666.229934.peg.349 CDS CP012958.1 348313 347369 -1 - 945 tRNA dimethylallyltransferase (EC 2.5.1.75) tRNA modification Bacteria;
tRNA processing
fig|6666666.229934.peg.350 CDS CP012958.1 350178 348328 -3 - 1851 DNA mismatch repair protein MutL DNA repair, bacterial MutL-MutS system
fig|6666666.229934.peg.351 CDS CP012958.1 351665 350178 -2 - 1488 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) Murein Hydrolases;
Recycling of Peptidoglycan Amino Acids
fig|6666666.229934.peg.352 CDS CP012958.1 352156 351662 -1 - 495 TsaE protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA Scaffold proteins for [4Fe-4S] cluster assembly (MRP family);
YjeE;
YrdC-YciO-Sua5 protein family
fig|6666666.229934.peg.353 CDS CP012958.1 352131 352259 3 + 129 hypothetical protein - none -
fig|6666666.229934.peg.354 CDS CP012958.1 354105 352312 -3 - 1794 Mlr4739 protein - none -
fig|6666666.229934.peg.355 CDS CP012958.1 355413 354493 -3 - 921 RfbJ protein - none -
fig|6666666.229934.peg.356 CDS CP012958.1 356929 355421 -1 - 1509 conserved domain protein - none -
fig|6666666.229934.peg.357 CDS CP012958.1 357533 356916 -2 - 618 Glycerate kinase (EC 2.7.1.31) D-galactarate, D-glucarate and D-glycerate catabolism;
D-galactarate, D-glucarate and D-glycerate catabolism - gjo;
Glycerate metabolism;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Glycine and Serine Utilization;
Serine-glyoxylate cycle
fig|6666666.229934.peg.358 CDS CP012958.1 359076 357562 -3 - 1515 Dca - none -
fig|6666666.229934.peg.359 CDS CP012958.1 360143 359595 -2 - 549 3@1-to-5@1 oligoribonuclease (orn) RNA processing and degradation, bacterial
fig|6666666.229934.peg.360 CDS CP012958.1 360214 361254 1 + 1041 Ribosome small subunit-stimulated GTPase EngC Universal GTPases
fig|6666666.229934.peg.361 CDS CP012958.1 361475 361732 2 + 258 Phosphotransferase system, phosphocarrier protein HPr Fructose utilization;
Mannitol Utilization
fig|6666666.229934.peg.362 CDS CP012958.1 361846 363573 1 + 1728 Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) Fructose utilization;
Mannitol Utilization
fig|6666666.229934.peg.363 CDS CP012958.1 363634 364134 1 + 501 PTS system, glucose-specific IIA component - none -
fig|6666666.229934.peg.364 CDS CP012958.1 366299 364260 -2 - 2040 Oligopeptidase A (EC 3.4.24.70) Protein degradation
fig|6666666.229934.peg.365 CDS CP012958.1 366441 366806 3 + 366 FIG039061: hypothetical protein related to heme utilization - none -
fig|6666666.229934.peg.366 CDS CP012958.1 366862 368400 1 + 1539 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229934.peg.367 CDS CP012958.1 369262 368675 -1 - 588 Aminodeoxychorismate lyase (EC 4.1.3.38) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Folate Biosynthesis;
Tryptophan synthesis
fig|6666666.229934.peg.368 CDS CP012958.1 370239 369265 -3 - 975 Para-aminobenzoate synthase, aminase component (EC 2.6.1.85) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Folate Biosynthesis;
Tryptophan synthesis
fig|6666666.229934.peg.369 CDS CP012958.1 370341 370907 3 + 567 Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Folate Biosynthesis;
Tryptophan synthesis
fig|6666666.229934.peg.370 CDS CP012958.1 371063 372007 2 + 945 Hydroxypyruvate reductase (EC 1.1.1.81) Glycerate metabolism;
Glycolate, glyoxylate interconversions
fig|6666666.229934.peg.371 CDS CP012958.1 372550 373734 1 + 1185 Lipoprotein releasing system transmembrane protein LolC Lipopolysaccharide assembly;
Lipoprotein sorting system
fig|6666666.229934.peg.372 CDS CP012958.1 373749 374435 3 + 687 Lipoprotein releasing system ATP-binding protein LolD Lipopolysaccharide assembly;
Lipoprotein sorting system
fig|6666666.229934.peg.373 CDS CP012958.1 374435 375685 2 + 1251 Lipoprotein releasing system transmembrane protein LolE Lipopolysaccharide assembly;
Lipoprotein sorting system
fig|6666666.229934.peg.374 CDS CP012958.1 375786 376865 3 + 1080 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha (EC 2.5.1.54) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229934.peg.375 CDS CP012958.1 376996 376874 -1 - 123 hypothetical protein - none -
fig|6666666.229934.peg.376 CDS CP012958.1 377011 378417 1 + 1407 Replicative DNA helicase (EC 3.6.1.-) - none -
fig|6666666.229934.peg.377 CDS CP012958.1 378441 379523 3 + 1083 Alanine racemase (EC 5.1.1.1) ## biosynthetic Alanine biosynthesis;
Pyruvate Alanine Serine Interconversions
fig|6666666.229934.peg.378 CDS CP012958.1 379539 381188 3 + 1650 Glucose-6-phosphate isomerase (EC 5.3.1.9) Glycolysis and Gluconeogenesis
fig|6666666.229934.peg.379 CDS CP012958.1 381328 381801 1 + 474 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster
fig|6666666.229934.peg.380 CDS CP012958.1 381808 382233 1 + 426 Transcription termination protein NusB Riboflavin synthesis cluster;
Transcription factors bacterial
fig|6666666.229934.peg.381 CDS CP012958.1 382252 383235 1 + 984 Thiamine-monophosphate kinase (EC 2.7.4.16) 5-FCL-like protein;
Riboflavin synthesis cluster;
Thiamin biosynthesis
fig|6666666.229934.peg.382 CDS CP012958.1 383245 383736 1 + 492 Phosphatidylglycerophosphatase A (EC 3.1.3.27) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Riboflavin synthesis cluster
fig|6666666.229934.peg.383 CDS CP012958.1 383745 384368 3 + 624 L-lysine permease - none -
fig|6666666.229934.peg.384 CDS CP012958.1 384390 385202 3 + 813 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229934.peg.385 CDS CP012958.1 385617 385369 -3 - 249 Ferredoxin Soluble cytochromes and functionally related electron carriers
fig|6666666.229934.peg.386 CDS CP012958.1 385954 385685 -1 - 270 hypothetical protein - none -
fig|6666666.229934.peg.387 CDS CP012958.1 387106 385976 -1 - 1131 Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) Ribonucleotide reduction
fig|6666666.229934.peg.388 CDS CP012958.1 387964 387308 -1 - 657 hypothetical protein - none -
fig|6666666.229934.peg.389 CDS CP012958.1 390288 388018 -3 - 2271 Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) Ribonucleotide reduction
fig|6666666.229934.peg.390 CDS CP012958.1 390625 390497 -1 - 129 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229934.peg.391 CDS CP012958.1 392063 390591 -2 - 1473 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229934.peg.392 CDS CP012958.1 392201 392323 2 + 123 hypothetical protein - none -
fig|6666666.229934.peg.393 CDS CP012958.1 392334 393362 3 + 1029 Ferric iron ABC transporter, iron-binding protein Iron acquisition in Streptococcus
fig|6666666.229934.peg.394 CDS CP012958.1 393414 395447 3 + 2034 Ferric iron ABC transporter, permease protein Iron acquisition in Streptococcus
fig|6666666.229934.peg.395 CDS CP012958.1 395431 396471 1 + 1041 Sulfate and thiosulfate import ATP-binding protein CysA (EC 3.6.3.25) Cysteine Biosynthesis;
Uptake of selenate and selenite
fig|6666666.229934.peg.396 CDS CP012958.1 398582 396531 -2 - 2052 Periplasmic alpha-amylase (EC 3.2.1.1) Maltose and Maltodextrin Utilization
fig|6666666.229934.peg.397 CDS CP012958.1 399567 398677 -3 - 891 Maltose/maltodextrin ABC transporter, permease protein MalG Maltose and Maltodextrin Utilization
fig|6666666.229934.peg.398 CDS CP012958.1 401133 399589 -3 - 1545 Maltose/maltodextrin ABC transporter, permease protein MalF Maltose and Maltodextrin Utilization
fig|6666666.229934.peg.399 CDS CP012958.1 401288 401157 -2 - 132 hypothetical protein - none -
fig|6666666.229934.peg.400 CDS CP012958.1 402447 401257 -3 - 1191 Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein MalE Alpha-Amylase locus in Streptocococcus;
Bacterial Chemotaxis;
Maltose and Maltodextrin Utilization
fig|6666666.229934.peg.401 CDS CP012958.1 402904 404022 1 + 1119 Maltose/maltodextrin transport ATP-binding protein MalK (EC 3.6.3.19) Maltose and Maltodextrin Utilization
fig|6666666.229934.peg.402 CDS CP012958.1 404099 405382 2 + 1284 Maltoporin (maltose/maltodextrin high-affinity receptor, phage lambda receptor protein) Maltose and Maltodextrin Utilization
fig|6666666.229934.peg.403 CDS CP012958.1 405468 406367 3 + 900 Maltose operon periplasmic protein MalM Maltose and Maltodextrin Utilization
fig|6666666.229934.peg.404 CDS CP012958.1 406438 406569 1 + 132 hypothetical protein - none -
fig|6666666.229934.peg.405 CDS CP012958.1 407476 406745 -1 - 732 Molybdopterin biosynthesis protein MoeB Molybdenum cofactor biosynthesis
fig|6666666.229934.peg.406 CDS CP012958.1 408706 407492 -1 - 1215 Molybdopterin biosynthesis protein MoeA Molybdenum cofactor biosynthesis
fig|6666666.229934.peg.407 CDS CP012958.1 408835 409491 1 + 657 GTP cyclohydrolase I (EC 3.5.4.16) type 1 Folate Biosynthesis;
Folate biosynthesis cluster;
Molybdenum cofactor biosynthesis;
Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229934.peg.408 CDS CP012958.1 411034 409592 -1 - 1443 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) Metallocarboxypeptidases (EC 3.4.17.-);
Murein Hydrolases;
Peptidoglycan Biosynthesis
fig|6666666.229934.peg.409 CDS CP012958.1 411194 411670 2 + 477 Transcription elongation factor GreA Transcription factors bacterial
fig|6666666.229934.peg.410 CDS CP012958.1 412045 411743 -1 - 303 FIG004454: RNA binding protein - none -
fig|6666666.229934.peg.411 CDS CP012958.1 412213 412512 1 + 300 Phage-related protein - none -
fig|6666666.229934.peg.412 CDS CP012958.1 412509 412805 3 + 297 FIG045511: hypothetical antitoxin (to FIG022160: hypothetical toxin) - none -
fig|6666666.229934.peg.413 CDS CP012958.1 413452 412838 -1 - 615 Riboflavin synthase eubacterial/eukaryotic (EC 2.5.1.9) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster;
riboflavin to FAD
fig|6666666.229934.peg.414 CDS CP012958.1 413479 414876 1 + 1398 Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps Multidrug Resistance Efflux Pumps;
Riboflavin, FMN and FAD metabolism in plants
fig|6666666.229934.peg.415 CDS CP012958.1 415659 415180 -3 - 480 Cys-tRNA(Pro) deacylase YbaK tRNA aminoacylation, Pro
fig|6666666.229934.peg.416 CDS CP012958.1 415720 416523 1 + 804 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch;
Threonine and Homoserine Biosynthesis
fig|6666666.229934.peg.417 CDS CP012958.1 416508 416957 3 + 450 Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229934.peg.418 CDS CP012958.1 416926 417729 1 + 804 Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229934.peg.419 CDS CP012958.1 417732 418346 3 + 615 ABC transporter ATP-binding protein - none -
fig|6666666.229934.peg.420 CDS CP012958.1 418343 419203 2 + 861 Molybdenum transport system protein ModD Molybdenum cofactor biosynthesis
fig|6666666.229934.peg.421 CDS CP012958.1 419499 420947 3 + 1449 TldD protein, part of TldE/TldD proteolytic complex CBSS-354.1.peg.2917;
Putative TldE-TldD proteolytic complex
fig|6666666.229934.peg.422 CDS CP012958.1 420998 426769 2 + 5772 FIG00904191: hypothetical protein - none -
fig|6666666.229934.peg.423 CDS CP012958.1 426902 427951 2 + 1050 Putative membrane protein YeiH - none -
fig|6666666.229934.peg.424 CDS CP012958.1 428119 430428 1 + 2310 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) DNA uptake cluster;
Peptidoglycan Biosynthesis;
Type IV pilus
fig|6666666.229934.peg.425 CDS CP012958.1 431212 430538 -1 - 675 3-keto-L-gulonate 6-phosphate decarboxylase L-ascorbate utilization (and related gene clusters)
fig|6666666.229934.peg.426 CDS CP012958.1 431750 431289 -2 - 462 Ascorbate-specific PTS system, EIIA component (EC 2.7.1.-) L-ascorbate utilization (and related gene clusters)
fig|6666666.229934.peg.427 CDS CP012958.1 433577 431805 -2 - 1773 Ascorbate-specific PTS system, EIIC component L-ascorbate utilization (and related gene clusters)
fig|6666666.229934.peg.428 CDS CP012958.1 433925 435016 2 + 1092 Probable L-ascorbate-6-phosphate lactonase UlaG (EC 3.1.1.-) (L-ascorbate utilization protein G) L-ascorbate utilization (and related gene clusters)
fig|6666666.229934.peg.429 CDS CP012958.1 435108 435857 3 + 750 Ascorbate utilization transcriptional regulator UlaR, HTH-type L-ascorbate utilization (and related gene clusters)
fig|6666666.229934.peg.430 CDS CP012958.1 435898 436758 1 + 861 L-xylulose 5-phosphate 3-epimerase (EC 5.1.3.-) L-ascorbate utilization (and related gene clusters)
fig|6666666.229934.peg.431 CDS CP012958.1 436752 437447 3 + 696 L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) L-ascorbate utilization (and related gene clusters)
fig|6666666.229934.peg.432 CDS CP012958.1 438744 437530 -3 - 1215 Tyrosine-specific transport protein - none -
fig|6666666.229934.peg.433 CDS CP012958.1 439006 439233 1 + 228 Beta-galactosidase (EC 3.2.1.23) Galactosylceramide and Sulfatide metabolism;
Lactose and Galactose Uptake and Utilization;
Lactose utilization
fig|6666666.229934.peg.434 CDS CP012958.1 439760 439497 -2 - 264 Glutaredoxin 1 Glutaredoxins;
Glutathione: Redox cycle
fig|6666666.229934.peg.435 CDS CP012958.1 439887 440621 3 + 735 Oxygen-insensitive NADPH nitroreductase (EC 1.-.-.-) - none -
fig|6666666.229934.peg.436 CDS CP012958.1 440712 441545 3 + 834 Ribosomal protein S6 glutaminyl transferase Ribosome biogenesis bacterial
fig|6666666.229934.peg.437 CDS CP012958.1 441598 441789 1 + 192 hypothetical protein - none -
fig|6666666.229934.peg.438 CDS CP012958.1 442446 441841 -3 - 606 FIG026291: Hypothetical periplasmic protein - none -
fig|6666666.229934.peg.439 CDS CP012958.1 443944 442550 -1 - 1395 Fumarate hydratase class II (EC 4.2.1.2) TCA Cycle
fig|6666666.229934.peg.440 CDS CP012958.1 444154 444603 1 + 450 DNA polymerase III chi subunit (EC 2.7.7.7) CBSS-208964.1.peg.3826
fig|6666666.229934.peg.441 CDS CP012958.1 444642 444770 3 + 129 RNA-binding domain protein - none -
fig|6666666.229934.peg.442 CDS CP012958.1 444798 444926 3 + 129 RNA-binding domain protein - none -
fig|6666666.229934.peg.443 CDS CP012958.1 445645 448509 1 + 2865 Valyl-tRNA synthetase (EC 6.1.1.9) CBSS-208964.1.peg.3826;
tRNA aminoacylation, Val
fig|6666666.229934.peg.444 CDS CP012958.1 448576 449469 1 + 894 hypothetical protein - none -
fig|6666666.229934.peg.445 CDS CP012958.1 449588 449466 -2 - 123 HipA protein Persister Cells
fig|6666666.229934.peg.446 CDS CP012958.1 449701 449588 -1 - 114 HipA protein Persister Cells
fig|6666666.229934.peg.447 CDS CP012958.1 450036 449698 -3 - 339 HipA protein Persister Cells
fig|6666666.229934.peg.448 CDS CP012958.1 450367 450086 -1 - 282 HipB protein Persister Cells
fig|6666666.229934.peg.449 CDS CP012958.1 452025 450511 -3 - 1515 Inner membrane component of tripartite multidrug resistance system Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria
fig|6666666.229934.peg.450 CDS CP012958.1 453198 452038 -3 - 1161 Membrane fusion component of tripartite multidrug resistance system Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria
fig|6666666.229934.peg.451 CDS CP012958.1 453407 453889 2 + 483 Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1) Oxidative stress;
Oxidative stress;
Oxidative stress
fig|6666666.229934.peg.452 CDS CP012958.1 455987 454008 -2 - 1980 Exoribonuclease II (EC 3.1.13.1) RNA processing and degradation, bacterial
fig|6666666.229934.peg.453 CDS CP012958.1 456848 456060 -2 - 789 Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9) Fatty Acid Biosynthesis FASII
fig|6666666.229934.peg.454 CDS CP012958.1 457796 456939 -2 - 858 FIG137478: Hypothetical protein YbgI - none -
fig|6666666.229934.peg.455 CDS CP012958.1 458593 457919 -1 - 675 Queuosine Biosynthesis QueE Radical SAM Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229934.peg.456 CDS CP012958.1 458979 458554 -3 - 426 6-carboxytetrahydropterin synthase (EC 4.1.2.50) @ Queuosine biosynthesis QueD, PTPS-I Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229934.peg.457 CDS CP012958.1 460677 459169 -3 - 1509 Lysyl-tRNA synthetase (class II) (EC 6.1.1.6) tRNA aminoacylation, Lys
fig|6666666.229934.peg.458 CDS CP012958.1 461636 460734 -2 - 903 Peptide chain release factor 2; programmed frameshift-containing Programmed frameshift;
Programmed frameshift;
Translation termination factors bacterial
fig|6666666.229934.peg.459 CDS CP012958.1 461916 461755 -3 - 162 hypothetical protein - none -
fig|6666666.229934.peg.460 CDS CP012958.1 462000 462683 3 + 684 Thiol:disulfide interchange protein DsbC Periplasmic disulfide interchange
fig|6666666.229934.peg.461 CDS CP012958.1 462696 464417 3 + 1722 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) DNA Repair Base Excision;
DNA repair, bacterial RecFOR pathway
fig|6666666.229934.peg.462 CDS CP012958.1 464450 465097 2 + 648 Thiol-disulfide isomerase and thioredoxins - none -
fig|6666666.229934.peg.463 CDS CP012958.1 465114 465806 3 + 693 5@1-methylthioadenosine nucleosidase (EC 3.2.2.16) / S-adenosylhomocysteine nucleosidase (EC 3.2.2.9) Adenosyl nucleosidases;
Adenosyl nucleosidases;
Methionine Biosynthesis;
Methionine Degradation;
Polyamine Metabolism
fig|6666666.229934.peg.464 CDS CP012958.1 465985 466680 1 + 696 Additional periplasmic component NikK of nickel ECF transporter Transport of Nickel and Cobalt
fig|6666666.229934.peg.465 CDS CP012958.1 466687 467190 1 + 504 Additional component NikL of nickel ECF transporter Transport of Nickel and Cobalt
fig|6666666.229934.peg.466 CDS CP012958.1 467190 467843 3 + 654 Substrate-specific component NikM of nickel ECF transporter ECF class transporters;
Transport of Nickel and Cobalt
fig|6666666.229934.peg.467 CDS CP012958.1 467840 468535 2 + 696 Transmembrane component NikQ of energizing module of nickel ECF transporter ECF class transporters;
Transport of Nickel and Cobalt
fig|6666666.229934.peg.468 CDS CP012958.1 468501 469124 3 + 624 ATPase component NikO of energizing module of nickel ECF transporter ECF class transporters;
Transport of Nickel and Cobalt
fig|6666666.229934.peg.469 CDS CP012958.1 469203 470012 3 + 810 [NiFe] hydrogenase nickel incorporation-associated protein HypB G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229934.peg.470 CDS CP012958.1 470039 471151 2 + 1113 [NiFe] hydrogenase metallocenter assembly protein HypD G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229934.peg.471 CDS CP012958.1 471151 472164 1 + 1014 [NiFe] hydrogenase metallocenter assembly protein HypE G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229934.peg.472 CDS CP012958.1 472186 472338 1 + 153 hypothetical protein - none -
fig|6666666.229934.peg.473 CDS CP012958.1 473328 473191 -3 - 138 hypothetical protein - none -
fig|6666666.229934.peg.474 CDS CP012958.1 474945 474130 -3 - 816 Shikimate 5-dehydrogenase I gamma (EC 1.1.1.25) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229934.peg.475 CDS CP012958.1 475979 475095 -2 - 885 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) 5-FCL-like protein;
Methionine Biosynthesis;
One-carbon metabolism by tetrahydropterines;
Serine-glyoxylate cycle
fig|6666666.229934.peg.476 CDS CP012958.1 477221 476154 -2 - 1068 FIG000906: Predicted Permease CBSS-208964.1.peg.3826
fig|6666666.229934.peg.477 CDS CP012958.1 478344 477226 -3 - 1119 FIG000988: Predicted permease CBSS-208964.1.peg.3826
fig|6666666.229934.peg.478 CDS CP012958.1 478481 479971 2 + 1491 Cytosol aminopeptidase PepA (EC 3.4.11.1) Aminopeptidases (EC 3.4.11.-);
CBSS-208964.1.peg.3826;
Dehydrogenase complexes
fig|6666666.229934.peg.479 CDS CP012958.1 481177 480116 -1 - 1062 Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229934.peg.480 CDS CP012958.1 481892 481164 -2 - 729 Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229934.peg.481 CDS CP012958.1 482735 481971 -2 - 765 Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229934.peg.482 CDS CP012958.1 482962 483741 1 + 780 DNA-binding domain of ModE / Molybdate-binding domain of ModE Molybdenum cofactor biosynthesis;
Molybdenum cofactor biosynthesis
fig|6666666.229934.peg.483 CDS CP012958.1 483962 485305 2 + 1344 Arsenic efflux pump protein Arsenic resistance
fig|6666666.229934.peg.484 CDS CP012958.1 485968 485372 -1 - 597 Nucleotidase YfbR, HD superfamily Housecleaning nucleoside triphosphate pyrophosphatases
fig|6666666.229934.peg.485 CDS CP012958.1 487005 485977 -3 - 1029 Outer membrane stress sensor protease DegS Periplasmic Stress Response;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229934.peg.486 CDS CP012958.1 488138 487014 -2 - 1125 Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster;
Riboflavin synthesis cluster
fig|6666666.229934.peg.487 CDS CP012958.1 488590 488138 -1 - 453 Ribonucleotide reductase transcriptional regulator NrdR Ribonucleotide reduction
fig|6666666.229934.peg.488 CDS CP012958.1 489795 488707 -3 - 1089 LSU rRNA 2@1-O-methyl-C2498 methyltransferase RlmM RNA methylation
fig|6666666.229934.peg.489 CDS CP012958.1 490815 489910 -3 - 906 Glycine cleavage system transcriptional activator GcvA LysR-family proteins in Escherichia coli;
Orphan regulatory proteins
fig|6666666.229934.peg.490 CDS CP012958.1 491277 492296 3 + 1020 Branched-chain amino acid aminotransferase (EC 2.6.1.42) Alanine biosynthesis;
Pyruvate Alanine Serine Interconversions
fig|6666666.229934.peg.491 CDS CP012958.1 492664 493404 1 + 741 FIG00698611: hypothetical protein - none -
fig|6666666.229934.peg.492 CDS CP012958.1 494495 493560 -2 - 936 Malate dehydrogenase (EC 1.1.1.37) Serine-glyoxylate cycle;
TCA Cycle
fig|6666666.229934.peg.493 CDS CP012958.1 494751 495218 3 + 468 Arginine pathway regulatory protein ArgR, repressor of arg regulon Arginine Deiminase Pathway;
Arginine and Ornithine Degradation
fig|6666666.229934.peg.494 CDS CP012958.1 495242 496129 2 + 888 Cell division inhibitor CBSS-83333.1.peg.946;
Persister Cells
fig|6666666.229934.peg.495 CDS CP012958.1 496320 496901 3 + 582 Electron transport complex protein RnfA Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229934.peg.496 CDS CP012958.1 496901 497491 2 + 591 Electron transport complex protein RnfB Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229934.peg.497 CDS CP012958.1 497492 499444 2 + 1953 Electron transport complex protein RnfC Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229934.peg.498 CDS CP012958.1 499455 500534 3 + 1080 Electron transport complex protein RnfD Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229934.peg.499 CDS CP012958.1 500541 501152 3 + 612 Electron transport complex protein RnfG Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229934.peg.500 CDS CP012958.1 501152 501937 2 + 786 Electron transport complex protein RnfE Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229934.peg.501 CDS CP012958.1 502084 502719 1 + 636 Endonuclease III (EC 4.2.99.18) DNA Repair Base Excision
fig|6666666.229934.peg.502 CDS CP012958.1 502744 504111 1 + 1368 sodium-dependent transporter - none -
fig|6666666.229934.peg.503 CDS CP012958.1 505291 504506 -1 - 786 Zinc ABC transporter, inner membrane permease protein ZnuB - none -
fig|6666666.229934.peg.504 CDS CP012958.1 506076 505303 -3 - 774 Zinc ABC transporter, ATP-binding protein ZnuC - none -
fig|6666666.229934.peg.505 CDS CP012958.1 506265 507797 3 + 1533 Cell wall endopeptidase, family M23/M37 Glutaredoxins
fig|6666666.229934.peg.506 CDS CP012958.1 508663 507905 -1 - 759 Iron(III) dicitrate transport ATP-binding protein FecE (TC 3.A.1.14.1) - none -
fig|6666666.229934.peg.507 CDS CP012958.1 509616 508675 -3 - 942 Ferric vibriobactin, enterobactin transport system, permease protein VctG (TC 3.A.1.14.6) - none -
fig|6666666.229934.peg.508 CDS CP012958.1 510571 509606 -1 - 966 Ferric anguibactin transport system permease protein fatD - none -
fig|6666666.229934.peg.509 CDS CP012958.1 511530 510631 -3 - 900 Iron compound ABC uptake transporter substrate-binding protein PiuA - none -
fig|6666666.229934.peg.510 CDS CP012958.1 511785 511603 -3 - 183 hypothetical protein - none -
fig|6666666.229934.peg.511 CDS CP012958.1 511762 513735 1 + 1974 2@1,3@1-cyclic-nucleotide 2@1-phosphodiesterase (EC 3.1.4.16) Purine conversions;
pyrimidine conversions
fig|6666666.229934.peg.512 CDS CP012958.1 514726 513809 -1 - 918 formate dehydrogenase formation protein FdhE Formate hydrogenase
fig|6666666.229934.peg.513 CDS CP012958.1 514974 514840 -3 - 135 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229934.peg.514 CDS CP012958.1 515099 515515 2 + 417 Protein ygiW precursor - none -
fig|6666666.229934.peg.515 CDS CP012958.1 515649 515981 3 + 333 Phage FAD/FMN-containing dehydrogenase - none -
fig|6666666.229934.peg.516 CDS CP012958.1 515994 516239 3 + 246 hypothetical protein - none -
fig|6666666.229934.peg.517 CDS CP012958.1 516273 516449 3 + 177 hypothetical protein - none -
fig|6666666.229934.peg.518 CDS CP012958.1 516449 519229 2 + 2781 FIG00696772: hypothetical protein - none -
fig|6666666.229934.peg.519 CDS CP012958.1 519404 520252 2 + 849 FIG00697497: hypothetical protein - none -
fig|6666666.229934.peg.520 CDS CP012958.1 520737 520856 3 + 120 Two-component system response regulator QseB Orphan regulatory proteins
fig|6666666.229934.peg.521 CDS CP012958.1 520843 522219 1 + 1377 Sensory histidine kinase QseC Orphan regulatory proteins
fig|6666666.229934.peg.522 CDS CP012958.1 524073 522304 -3 - 1770 Gamma-glutamyltranspeptidase (EC 2.3.2.2) Glutathione: Biosynthesis and gamma-glutamyl cycle
fig|6666666.229934.peg.523 CDS CP012958.1 524551 524306 -1 - 246 FIG00696862: hypothetical protein - none -
fig|6666666.229934.peg.524 CDS CP012958.1 526078 524741 -1 - 1338 Argininosuccinate synthase (EC 6.3.4.5) - none -
fig|6666666.229934.peg.525 CDS CP012958.1 527000 526173 -2 - 828 Nucleoside-diphosphate-sugar epimerases - none -
fig|6666666.229934.peg.526 CDS CP012958.1 527357 528940 2 + 1584 Peptide chain release factor 3 Translation termination factors bacterial
fig|6666666.229934.peg.527 CDS CP012958.1 529128 529478 3 + 351 YPPCP.09C homologue - none -
fig|6666666.229934.peg.528 CDS CP012958.1 529475 529774 2 + 300 Putative transcriptional regulator - none -
fig|6666666.229934.peg.529 CDS CP012958.1 532743 529810 -3 - 2934 Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42) Ammonia assimilation;
CBSS-316057.3.peg.3521
fig|6666666.229934.peg.530 CDS CP012958.1 533165 534865 2 + 1701 CRISPR-associated protein Cas3@1@1 CRISPRs
fig|6666666.229934.peg.531 CDS CP012958.1 534828 535283 3 + 456 CRISPR-associated protein, Csd2/Csh2 family - none -
fig|6666666.229934.peg.532 CDS CP012958.1 535527 536204 3 + 678 CRISPR-associated RecB family exonuclease Cas4 / CRISPR-associated protein Cas1 CRISPRs
fig|6666666.229934.peg.533 CDS CP012958.1 536194 537948 1 + 1755 predicted ATP-dependent endonuclease, OLD family - none -
fig|6666666.229934.peg.534 CDS CP012958.1 538002 539015 3 + 1014 CRISPR-associated protein Cas1 CRISPRs
fig|6666666.229934.peg.535 CDS CP012958.1 539019 539312 3 + 294 CRISPR-associated protein Cas2 CRISPRs
fig|6666666.229934.peg.536 CDS CP012958.1 539970 539806 -3 - 165 hypothetical protein - none -
fig|6666666.229934.peg.537 CDS CP012958.1 540416 540640 2 + 225 Phosphomethylpyrimidine kinase (EC 2.7.4.7) 5-FCL-like protein;
Thiamin biosynthesis
fig|6666666.229934.peg.538 CDS CP012958.1 540838 541842 1 + 1005 Thiamin ABC transporter, substrate-binding component Thiamin biosynthesis
fig|6666666.229934.peg.539 CDS CP012958.1 541851 543479 3 + 1629 Thiamin ABC transporter, transmembrane component Thiamin biosynthesis
fig|6666666.229934.peg.540 CDS CP012958.1 543463 544110 1 + 648 Thiamin ABC transporter, ATPase component / Thiamine transport ATP-binding protein thiQ Thiamin biosynthesis
fig|6666666.229934.peg.541 CDS CP012958.1 544155 545159 3 + 1005 Biotin synthase (EC 2.8.1.6) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229934.peg.542 CDS CP012958.1 546639 545257 -3 - 1383 Outer membrane stress sensor protease DegQ, serine protease Periplasmic Stress Response;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229934.peg.543 CDS CP012958.1 546702 546872 3 + 171 hypothetical protein - none -
fig|6666666.229934.peg.544 CDS CP012958.1 547240 546830 -1 - 411 probable membrane protein YPO3565 - none -
fig|6666666.229934.peg.545 CDS CP012958.1 549174 547411 -3 - 1764 FIG00696060: hypothetical protein - none -
fig|6666666.229934.peg.546 CDS CP012958.1 550470 549265 -3 - 1206 Mannose-6-phosphate isomerase (EC 5.3.1.8) Mannose Metabolism
fig|6666666.229934.peg.547 CDS CP012958.1 550646 550984 2 + 339 FIG00904093: hypothetical protein - none -
fig|6666666.229934.peg.548 CDS CP012958.1 551172 552665 3 + 1494 PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69) Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism;
Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229934.peg.549 CDS CP012958.1 553421 552723 -2 - 699 FIG005121: SAM-dependent methyltransferase (EC 2.1.1.-) CBSS-228410.1.peg.134;
CBSS-342610.3.peg.1536;
Glutathione: Non-redox reactions
fig|6666666.229934.peg.550 CDS CP012958.1 553442 554143 2 + 702 Hydroxyacylglutathione hydrolase (EC 3.1.2.6) CBSS-228410.1.peg.134;
CBSS-342610.3.peg.1536;
Glutathione: Non-redox reactions;
Methylglyoxal Metabolism
fig|6666666.229934.peg.551 CDS CP012958.1 554328 555632 3 + 1305 Glutamyl-tRNA reductase (EC 1.2.1.70) A Gammaproteobacteria Cluster Relating to Translation;
Heme and Siroheme Biosynthesis
fig|6666666.229934.peg.552 CDS CP012958.1 555694 556917 1 + 1224 N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family Chitin and N-acetylglucosamine utilization
fig|6666666.229934.peg.553 CDS CP012958.1 558298 557654 -1 - 645 Adenylate kinase (EC 2.7.4.3) Purine conversions
fig|6666666.229934.peg.554 CDS CP012958.1 559720 558431 -1 - 1290 AmpG permease Recycling of Peptidoglycan Amino Acids
fig|6666666.229934.peg.555 CDS CP012958.1 560068 559727 -1 - 342 [NiFe] hydrogenase nickel incorporation protein HybF NiFe hydrogenase maturation
fig|6666666.229934.peg.556 CDS CP012958.1 561090 560074 -3 - 1017 UDP-glucose 4-epimerase (EC 5.1.3.2) Lactose and Galactose Uptake and Utilization;
Rhamnose containing glycans
fig|6666666.229934.peg.557 CDS CP012958.1 561284 561670 2 + 387 Integral membrane protein - none -
fig|6666666.229934.peg.558 CDS CP012958.1 561670 561822 1 + 153 hypothetical protein - none -
fig|6666666.229934.peg.559 CDS CP012958.1 561795 563126 3 + 1332 Guanine-hypoxanthine permease Purine Utilization
fig|6666666.229934.peg.560 CDS CP012958.1 564500 563154 -2 - 1347 tRNA(Ile)-lysidine synthetase (EC 6.3.4.19) Cell division-ribosomal stress proteins cluster;
Folate biosynthesis cluster;
tRNA modification Bacteria;
tRNA processing;
tRNAmodification position 34
fig|6666666.229934.peg.561 CDS CP012958.1 565389 564532 -3 - 858 Pyridoxal kinase (EC 2.7.1.35) Pyridoxin (Vitamin B6) Biosynthesis
fig|6666666.229934.peg.562 CDS CP012958.1 566405 565452 -2 - 954 Acetyl-coenzyme A carboxyl transferase alpha chain (EC 6.4.1.2) Fatty Acid Biosynthesis FASII
fig|6666666.229934.peg.563 CDS CP012958.1 568187 569137 2 + 951 hypothetical protein - none -
fig|6666666.229934.peg.564 CDS CP012958.1 569818 569642 -1 - 177 hypothetical protein - none -
fig|6666666.229934.peg.565 CDS CP012958.1 569962 569837 -1 - 126 hypothetical protein - none -
fig|6666666.229934.peg.566 CDS CP012958.1 570216 570019 -3 - 198 Phage protein - none -
fig|6666666.229934.peg.567 CDS CP012958.1 570958 570302 -1 - 657 Phage Rha protein - none -
fig|6666666.229934.peg.568 CDS CP012958.1 571626 571402 -3 - 225 hypothetical protein - none -
fig|6666666.229934.peg.569 CDS CP012958.1 572047 571691 -1 - 357 hypothetical protein - none -
fig|6666666.229934.peg.570 CDS CP012958.1 572962 573405 1 + 444 Orf33 - none -
fig|6666666.229934.peg.571 CDS CP012958.1 573674 573970 2 + 297 Phage protein - none -
fig|6666666.229934.peg.572 CDS CP012958.1 574078 574233 1 + 156 Phage protein - none -
fig|6666666.229934.peg.573 CDS CP012958.1 574424 574783 2 + 360 phage-related protein - none -
fig|6666666.229934.peg.574 CDS CP012958.1 575228 574809 -2 - 420 hypothetical protein - none -
fig|6666666.229934.peg.575 CDS CP012958.1 575462 575280 -2 - 183 hypothetical protein - none -
fig|6666666.229934.peg.576 CDS CP012958.1 575717 575848 2 + 132 hypothetical protein - none -
fig|6666666.229934.peg.577 CDS CP012958.1 575963 577129 2 + 1167 Phage tail fibers Phage tail fiber proteins
fig|6666666.229934.peg.578 CDS CP012958.1 577129 577740 1 + 612 Phage tail fibers Phage tail fiber proteins
fig|6666666.229934.peg.579 CDS CP012958.1 578726 577893 -2 - 834 Integrase - none -
fig|6666666.229934.peg.580 CDS CP012958.1 580476 578917 -3 - 1560 GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2) Purine conversions
fig|6666666.229934.peg.581 CDS CP012958.1 580774 580508 -1 - 267 YafQ toxin protein Toxin-antitoxin replicon stabilization systems
fig|6666666.229934.peg.582 CDS CP012958.1 581058 580786 -3 - 273 DNA-damage-inducible protein J DNA repair, bacterial;
Toxin-antitoxin replicon stabilization systems
fig|6666666.229934.peg.583 CDS CP012958.1 581283 581098 -3 - 186 hypothetical protein - none -
fig|6666666.229934.peg.584 CDS CP012958.1 582665 581313 -2 - 1353 C4-dicarboxylate transporter DcuC (TC 2.A.61.1.1) Citrate Metabolism, Transport, and Regulation
fig|6666666.229934.peg.585 CDS CP012958.1 583103 583558 2 + 456 FIG000325: clustered with transcription termination protein NusA NusA-TFII Cluster;
Transcription factors bacterial
fig|6666666.229934.peg.586 CDS CP012958.1 583582 585078 1 + 1497 Transcription termination protein NusA NusA-TFII Cluster;
Transcription factors bacterial
fig|6666666.229934.peg.587 CDS CP012958.1 585094 587586 1 + 2493 Translation initiation factor 2 CBSS-138119.3.peg.2719;
NusA-TFII Cluster;
Translation initiation factors bacterial;
Universal GTPases
fig|6666666.229934.peg.588 CDS CP012958.1 587705 590488 2 + 2784 Type III restriction-modification system methylation subunit (EC 2.1.1.72) Restriction-Modification System
fig|6666666.229934.peg.589 CDS CP012958.1 590819 591763 2 + 945 helicase domain protein - none -
fig|6666666.229934.peg.590 CDS CP012958.1 591850 592236 1 + 387 Ribosome-binding factor A CBSS-138119.3.peg.2719;
NusA-TFII Cluster;
Translation initiation factors bacterial
fig|6666666.229934.peg.591 CDS CP012958.1 592236 593153 3 + 918 tRNA pseudouridine synthase B (EC 4.2.1.70) CBSS-138119.3.peg.2719;
RNA pseudouridine syntheses;
Riboflavin, FMN and FAD metabolism in plants;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229934.peg.592 CDS CP012958.1 593341 593195 -1 - 147 hypothetical protein - none -
fig|6666666.229934.peg.593 CDS CP012958.1 594051 593440 -3 - 612 hypothetical protein - none -
fig|6666666.229934.peg.594 CDS CP012958.1 595365 594178 -3 - 1188 Tyrosyl-tRNA synthetase (EC 6.1.1.1) tRNA aminoacylation, Tyr
fig|6666666.229934.peg.595 CDS CP012958.1 596338 595613 -1 - 726 Sugar/maltose fermentation stimulation protein homolog Fermentations: Mixed acid
fig|6666666.229934.peg.596 CDS CP012958.1 596631 598166 3 + 1536 NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2) Phosphate metabolism
fig|6666666.229934.peg.597 CDS CP012958.1 598177 599601 1 + 1425 NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) Phosphate metabolism
fig|6666666.229934.peg.598 CDS CP012958.1 599618 599770 2 + 153 hypothetical protein - none -
fig|6666666.229934.peg.599 CDS CP012958.1 600146 599985 -2 - 162 hypothetical protein - none -
fig|6666666.229934.peg.600 CDS CP012958.1 600614 601462 2 + 849 filamentation induced by cAMP protein Fic-like protein - none -
fig|6666666.229934.peg.601 CDS CP012958.1 601974 603083 3 + 1110 Selenide,water dikinase (EC 2.7.9.3) Selenocysteine metabolism;
tRNA modification Bacteria
fig|6666666.229934.peg.602 CDS CP012958.1 603438 604391 3 + 954 Putative ABC transporter of substrate X, ATP-binding subunit ABC transporter of unknown substrate X
fig|6666666.229934.peg.603 CDS CP012958.1 604388 605257 2 + 870 Putative ABC transporter of substrate X, permease subunit I ABC transporter of unknown substrate X
fig|6666666.229934.peg.604 CDS CP012958.1 605254 606105 1 + 852 Putative ABC transporter of substrate X, permease subunit II ABC transporter of unknown substrate X
fig|6666666.229934.peg.605 CDS CP012958.1 606125 607216 2 + 1092 Possible ABC transporter, periplasmic substrate X binding protein precursor ABC transporter of unknown substrate X
fig|6666666.229934.peg.606 CDS CP012958.1 607407 607267 -3 - 141 Autoinducer 2 (AI-2) ABC transport system, periplasmic AI-2 binding protein LsrB Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229934.peg.607 CDS CP012958.1 609432 607603 -3 - 1830 Excinuclease ABC subunit C DNA repair, UvrABC system
fig|6666666.229934.peg.608 CDS CP012958.1 610344 609571 -3 - 774 3-deoxy-manno-octulosonate cytidylyltransferase (EC 2.7.7.38) KDO2-Lipid A biosynthesis;
KDO2-Lipid A biosynthesis cluster 2
fig|6666666.229934.peg.609 CDS CP012958.1 610525 610346 -1 - 180 FIG002473: Protein YcaR in KDO2-Lipid A biosynthesis cluster Broadly distributed proteins not in subsystems;
KDO2-Lipid A biosynthesis cluster 2
fig|6666666.229934.peg.610 CDS CP012958.1 611521 610547 -1 - 975 Tetraacyldisaccharide 4@1-kinase (EC 2.7.1.130) KDO2-Lipid A biosynthesis;
KDO2-Lipid A biosynthesis cluster 2
fig|6666666.229934.peg.611 CDS CP012958.1 613288 611540 -1 - 1749 Lipid A export ATP-binding/permease protein MsbA (EC 3.6.3.25) KDO2-Lipid A biosynthesis;
KDO2-Lipid A biosynthesis cluster 2
fig|6666666.229934.peg.612 CDS CP012958.1 615563 613335 -2 - 2229 DNA internalization-related competence protein ComEC/Rec2 KDO2-Lipid A biosynthesis;
KDO2-Lipid A biosynthesis cluster 2
fig|6666666.229934.peg.613 CDS CP012958.1 616056 616493 3 + 438 C4-type zinc finger protein, DksA/TraR family - none -
fig|6666666.229934.peg.614 CDS CP012958.1 616610 618076 2 + 1467 Poly(A) polymerase (EC 2.7.7.19) Polyadenylation bacterial
fig|6666666.229934.peg.615 CDS CP012958.1 618069 618569 3 + 501 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) Folate Biosynthesis;
Folate biosynthesis cluster
fig|6666666.229934.peg.616 CDS CP012958.1 618786 618640 -3 - 147 hypothetical protein - none -
fig|6666666.229934.peg.617 CDS CP012958.1 619001 618867 -2 - 135 hypothetical protein - none -
fig|6666666.229934.peg.618 CDS CP012958.1 621483 619348 -3 - 2136 Phosphate acetyltransferase (EC 2.3.1.8) Fermentations: Lactate;
Fermentations: Mixed acid;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229934.peg.619 CDS CP012958.1 622755 621553 -3 - 1203 Acetate kinase (EC 2.7.2.1) Fermentations: Lactate;
Fermentations: Mixed acid;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229934.peg.620 CDS CP012958.1 623023 623466 1 + 444 FIG00638298: membrane protein YfbV - none -
fig|6666666.229934.peg.621 CDS CP012958.1 623645 624187 2 + 543 Colicin V production protein - none -
fig|6666666.229934.peg.622 CDS CP012958.1 624309 624184 -3 - 126 hypothetical protein - none -
fig|6666666.229934.peg.623 CDS CP012958.1 626406 624331 -3 - 2076 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) Glycogen metabolism;
Glycogen metabolism cluster;
Maltose and Maltodextrin Utilization;
Maltose utilization cluster
fig|6666666.229934.peg.624 CDS CP012958.1 628906 626516 -1 - 2391 Maltodextrin phosphorylase (EC 2.4.1.1) Glycogen metabolism;
Maltose and Maltodextrin Utilization;
Maltose utilization cluster
fig|6666666.229934.peg.625 CDS CP012958.1 629079 631793 3 + 2715 Transcriptional activator of maltose regulon, MalT Maltose and Maltodextrin Utilization;
Maltose utilization cluster
fig|6666666.229934.peg.626 CDS CP012958.1 632821 631946 -1 - 876 Tellurite resistance protein TehB Tellurite resistance: Chromosomal determinants
fig|6666666.229934.peg.627 CDS CP012958.1 633199 635856 1 + 2658 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) 5-FCL-like protein;
Dehydrogenase complexes;
Methionine Degradation;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229934.peg.628 CDS CP012958.1 635885 637555 2 + 1671 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) 5-FCL-like protein;
Dehydrogenase complexes;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229934.peg.629 CDS CP012958.1 637592 639073 2 + 1482 Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4) 5-FCL-like protein;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate;
TCA Cycle;
TCA Cycle
fig|6666666.229934.peg.630 CDS CP012958.1 640055 639501 -2 - 555 FIG002003: Protein YdjA - none -
fig|6666666.229934.peg.631 CDS CP012958.1 640179 642059 3 + 1881 Signal peptide peptidase SppA (EC 3.4.21.-) - none -
fig|6666666.229934.peg.632 CDS CP012958.1 642100 642306 1 + 207 Chorismate mutase I (EC 5.4.99.5) / Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) Chorismate Synthesis;
Chorismate Synthesis;
Phenylalanine and Tyrosine Branches from Chorismate;
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229934.peg.633 CDS CP012958.1 642285 642449 3 + 165 Chorismate mutase I (EC 5.4.99.5) / Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) Chorismate Synthesis;
Chorismate Synthesis;
Phenylalanine and Tyrosine Branches from Chorismate;
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229934.peg.634 CDS CP012958.1 642404 643222 2 + 819 Chorismate mutase I (EC 5.4.99.5) / Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) Chorismate Synthesis;
Chorismate Synthesis;
Phenylalanine and Tyrosine Branches from Chorismate;
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229934.peg.635 CDS CP012958.1 643296 643919 3 + 624 Hypothetical YciO protein, TsaC/YrdC paralog YrdC-YciO-Sua5 protein family
fig|6666666.229934.peg.636 CDS CP012958.1 643974 644942 3 + 969 Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70) RNA pseudouridine syntheses
fig|6666666.229934.peg.637 CDS CP012958.1 644973 645935 3 + 963 Cys regulon transcriptional activator CysB Cysteine Biosynthesis;
LysR-family proteins in Escherichia coli
fig|6666666.229934.peg.638 CDS CP012958.1 646029 646856 3 + 828 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229934.peg.639 CDS CP012958.1 647291 646971 -2 - 321 putative cytoplasmic protein - none -
fig|6666666.229934.peg.640 CDS CP012958.1 647459 647325 -2 - 135 hypothetical protein - none -
fig|6666666.229934.peg.641 CDS CP012958.1 648760 647762 -1 - 999 Purine nucleotide synthesis repressor Purine nucleotide synthesis regulator
fig|6666666.229934.peg.642 CDS CP012958.1 650169 649066 -3 - 1104 Homoserine O-acetyltransferase (EC 2.3.1.31) Methionine Biosynthesis
fig|6666666.229934.peg.643 CDS CP012958.1 650362 651075 1 + 714 SanA protein - none -
fig|6666666.229934.peg.644 CDS CP012958.1 652045 651059 -1 - 987 Fructose repressor FruR, LacI family Fructose utilization
fig|6666666.229934.peg.645 CDS CP012958.1 652880 653137 2 + 258 FIG00699498: hypothetical protein - none -
fig|6666666.229934.peg.646 CDS CP012958.1 653292 653173 -3 - 120 FIG00697497: hypothetical protein - none -
fig|6666666.229934.peg.647 CDS CP012958.1 654791 654309 -2 - 483 Thiol:disulfide oxidoreductase associated with MetSO reductase Peptide methionine sulfoxide reductase
fig|6666666.229934.peg.648 CDS CP012958.1 655447 654806 -1 - 642 Cytochrome c-type biogenesis protein CcdA homolog, associated with MetSO reductase Peptide methionine sulfoxide reductase
fig|6666666.229934.peg.649 CDS CP012958.1 656521 655451 -1 - 1071 Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11) / Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) Cluster Ytf and putative sugar transporter;
Peptide methionine sulfoxide reductase;
Peptide methionine sulfoxide reductase;
Putative sugar ABC transporter (ytf cluster)
fig|6666666.229934.peg.650 CDS CP012958.1 656737 657429 1 + 693 Carbonic anhydrase (EC 4.2.1.1) - none -
fig|6666666.229934.peg.651 CDS CP012958.1 658122 657535 -3 - 588 21 kDa hemolysin precursor CBSS-160492.1.peg.550
fig|6666666.229934.peg.652 CDS CP012958.1 658771 658187 -1 - 585 Phosphoheptose isomerase (EC 5.3.1.-) CBSS-160492.1.peg.550;
Capsular heptose biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.229934.peg.653 CDS CP012958.1 659152 658784 -1 - 369 Predicted endonuclease distantly related to archaeal Holliday junction resolvase CBSS-160492.1.peg.550
fig|6666666.229934.peg.654 CDS CP012958.1 660871 659153 -1 - 1719 LppC putative lipoprotein CBSS-160492.1.peg.550
fig|6666666.229934.peg.655 CDS CP012958.1 660948 661796 3 + 849 rRNA small subunit methyltransferase I 16S rRNA modification within P site of ribosome;
CBSS-160492.1.peg.550;
Heat shock dnaK gene cluster extended
fig|6666666.229934.peg.656 CDS CP012958.1 662066 663655 2 + 1590 Glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Respiratory dehydrogenases 1
fig|6666666.229934.peg.657 CDS CP012958.1 663832 665169 1 + 1338 NADH dehydrogenase (EC 1.6.99.3) Respiratory dehydrogenases 1;
Riboflavin synthesis cluster
fig|6666666.229934.peg.658 CDS CP012958.1 665862 665272 -3 - 591 FMN-dependent NADH-azoreductase - none -
fig|6666666.229934.peg.659 CDS CP012958.1 666055 667113 1 + 1059 Possible protease sohB (EC 3.4.21.-) - none -
fig|6666666.229934.peg.660 CDS CP012958.1 667303 668127 1 + 825 Outer membrane protein A precursor Osmoregulation
fig|6666666.229934.peg.661 CDS CP012958.1 669061 668186 -1 - 876 Ribulosamine/erythrulosamine 3-kinase potentially involved in protein deglycation Protein deglycation
fig|6666666.229934.peg.662 CDS CP012958.1 669302 671233 2 + 1932 Threonyl-tRNA synthetase (EC 6.1.1.3) tRNA aminoacylation, Thr
fig|6666666.229934.peg.663 CDS CP012958.1 671479 671832 1 + 354 Type III restriction-modification system methylation subunit (EC 2.1.1.72) Restriction-Modification System
fig|6666666.229934.peg.664 CDS CP012958.1 671810 673045 2 + 1236 Type III restriction-modification system restriction subunit (EC 3.1.21.5) - none -
fig|6666666.229934.peg.665 CDS CP012958.1 673047 673184 3 + 138 hypothetical protein - none -
fig|6666666.229934.peg.666 CDS CP012958.1 673941 673162 -3 - 780 Ferredoxin--NADP(+) reductase (EC 1.18.1.2) Biogenesis of cytochrome c oxidases
fig|6666666.229934.peg.667 CDS CP012958.1 674316 674795 3 + 480 Translation initiation factor 3 Mycobacterium virulence operon involved in protein synthesis (LSU ribosomal proteins);
Translation initiation factors bacterial
fig|6666666.229934.peg.668 CDS CP012958.1 674939 674796 -2 - 144 hypothetical protein - none -
fig|6666666.229934.peg.669 CDS CP012958.1 675019 675216 1 + 198 LSU ribosomal protein L35p Mycobacterium virulence operon involved in protein synthesis (LSU ribosomal proteins);
Ribosome LSU bacterial
fig|6666666.229934.peg.670 CDS CP012958.1 675270 675623 3 + 354 LSU ribosomal protein L20p Mycobacterium virulence operon involved in protein synthesis (LSU ribosomal proteins);
Ribosome LSU bacterial
fig|6666666.229934.peg.671 CDS CP012958.1 675785 675672 -2 - 114 hypothetical protein - none -
fig|6666666.229934.peg.672 CDS CP012958.1 677223 677104 -3 - 120 hypothetical protein - none -
fig|6666666.229934.peg.673 CDS CP012958.1 677314 678264 1 + 951 Tagatose 1,6-bisphosphate aldolase (EC 4.1.2.40) - none -
fig|6666666.229934.peg.674 CDS CP012958.1 678282 679574 3 + 1293 Tagatose-6-phosphate kinase GatZ (EC 2.7.1.144) D-Tagatose and Galactitol Utilization
fig|6666666.229934.peg.675 CDS CP012958.1 679552 680001 1 + 450 PTS system, galactitol-specific IIA component (EC 2.7.1.69) D-Tagatose and Galactitol Utilization
fig|6666666.229934.peg.676 CDS CP012958.1 680020 680304 1 + 285 PTS system, galactitol-specific IIB component (EC 2.7.1.69) D-Tagatose and Galactitol Utilization
fig|6666666.229934.peg.677 CDS CP012958.1 680310 681674 3 + 1365 PTS system, galactitol-specific IIC component (EC 2.7.1.69) D-Tagatose and Galactitol Utilization
fig|6666666.229934.peg.678 CDS CP012958.1 681697 681858 1 + 162 Galactitol-1-phosphate 5-dehydrogenase (EC 1.1.1.251) D-Tagatose and Galactitol Utilization
fig|6666666.229934.peg.679 CDS CP012958.1 681882 682730 3 + 849 Galactitol-1-phosphate 5-dehydrogenase (EC 1.1.1.251) D-Tagatose and Galactitol Utilization
fig|6666666.229934.peg.680 CDS CP012958.1 682798 683556 1 + 759 Galactitol utilization operon repressor D-Tagatose and Galactitol Utilization
fig|6666666.229934.peg.681 CDS CP012958.1 685526 683676 -2 - 1851 1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis;
Pyridoxin (Vitamin B6) Biosynthesis;
Thiamin biosynthesis
fig|6666666.229934.peg.682 CDS CP012958.1 686501 685611 -2 - 891 Octaprenyl diphosphate synthase (EC 2.5.1.90) / Dimethylallyltransferase (EC 2.5.1.1) / (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10) / Geranylgeranyl diphosphate synthase (EC 2.5.1.29) Isoprenoid Biosynthesis;
Isoprenoid Biosynthesis;
Isoprenoid Biosynthesis: Interconversions;
Isoprenoinds for Quinones;
Isoprenoinds for Quinones;
Isoprenoinds for Quinones;
Isoprenoinds for Quinones;
Polyprenyl Diphosphate Biosynthesis;
Polyprenyl Diphosphate Biosynthesis;
Polyprenyl Diphosphate Biosynthesis
fig|6666666.229934.peg.683 CDS CP012958.1 686757 686512 -3 - 246 Exodeoxyribonuclease VII small subunit (EC 3.1.11.6) DNA repair, bacterial;
Purine salvage cluster
fig|6666666.229934.peg.684 CDS CP012958.1 686982 687878 3 + 897 Acetyl-coenzyme A carboxyl transferase beta chain (EC 6.4.1.2) Fatty Acid Biosynthesis FASII
fig|6666666.229934.peg.685 CDS CP012958.1 687901 689247 1 + 1347 Dihydrofolate synthase (EC 6.3.2.12) @ Folylpolyglutamate synthase (EC 6.3.2.17) Folate Biosynthesis;
Folate Biosynthesis
fig|6666666.229934.peg.686 CDS CP012958.1 689945 689304 -2 - 642 Hypothetical, related to broad specificity phosphatases COG0406 CBSS-196164.1.peg.461
fig|6666666.229934.peg.687 CDS CP012958.1 691464 690007 -3 - 1458 Cardiolipin synthetase (EC 2.7.8.-) Cardiolipin synthesis;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229934.peg.688 CDS CP012958.1 692386 691478 -1 - 909 Putative surface protein - none -
fig|6666666.229934.peg.689 CDS CP012958.1 692517 693194 3 + 678 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses;
Ribosome biogenesis bacterial;
tRNA modification Bacteria
fig|6666666.229934.peg.690 CDS CP012958.1 693239 694102 2 + 864 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229934.peg.691 CDS CP012958.1 694185 694508 3 + 324 Alkylphosphonate utilization operon protein PhnA - none -
fig|6666666.229934.peg.692 CDS CP012958.1 696256 694559 -1 - 1698 hypothetical protein - none -
fig|6666666.229934.peg.693 CDS CP012958.1 696823 697092 1 + 270 hypothetical protein - none -
fig|6666666.229934.peg.694 CDS CP012958.1 697721 697984 2 + 264 Esterase/lipase - none -
fig|6666666.229934.peg.695 CDS CP012958.1 697981 699057 1 + 1077 Esterase/lipase - none -
fig|6666666.229934.peg.696 CDS CP012958.1 700746 699373 -3 - 1374 RND efflux system, outer membrane lipoprotein CmeC Multidrug Resistance Efflux Pumps
fig|6666666.229934.peg.697 CDS CP012958.1 702757 700823 -1 - 1935 Macrolide export ATP-binding/permease protein MacB (EC 3.6.3.-) Multidrug Resistance Efflux Pumps
fig|6666666.229934.peg.698 CDS CP012958.1 703961 702777 -2 - 1185 Macrolide-specific efflux protein MacA Multidrug Resistance Efflux Pumps
fig|6666666.229934.peg.699 CDS CP012958.1 704162 705853 2 + 1692 Glutaminyl-tRNA synthetase (EC 6.1.1.18) tRNA aminoacylation, Glu and Gln
fig|6666666.229934.peg.700 CDS CP012958.1 705925 706359 1 + 435 YcgN (Fragment) CBSS-243277.1.peg.4359
fig|6666666.229934.peg.701 CDS CP012958.1 706459 707019 1 + 561 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) Glycogen metabolism;
Glycogen metabolism cluster;
Maltose and Maltodextrin Utilization;
Maltose utilization cluster
fig|6666666.229934.peg.702 CDS CP012958.1 707016 709211 3 + 2196 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) Glycogen metabolism;
Glycogen metabolism cluster
fig|6666666.229934.peg.703 CDS CP012958.1 709208 711217 2 + 2010 Glycogen debranching enzyme (EC 3.2.1.-) Glycogen metabolism;
Glycogen metabolism cluster
fig|6666666.229934.peg.704 CDS CP012958.1 711244 712554 1 + 1311 Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27) Glycogen metabolism;
Glycogen metabolism cluster
fig|6666666.229934.peg.705 CDS CP012958.1 712756 714195 1 + 1440 Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21) Glycogen metabolism;
Glycogen metabolism cluster
fig|6666666.229934.peg.706 CDS CP012958.1 714319 716784 1 + 2466 Glycogen phosphorylase (EC 2.4.1.1) Glycogen metabolism;
Glycogen metabolism cluster;
Maltose and Maltodextrin Utilization
fig|6666666.229934.peg.707 CDS CP012958.1 716949 716809 -3 - 141 hypothetical protein - none -
fig|6666666.229934.peg.708 CDS CP012958.1 717508 716903 -1 - 606 DedA protein DedA family of inner membrane proteins;
Uptake of selenate and selenite
fig|6666666.229934.peg.709 CDS CP012958.1 717722 718009 2 + 288 LSU ribosomal protein L25p Ribosome LSU bacterial;
Transcription repair cluster
fig|6666666.229934.peg.710 CDS CP012958.1 718157 718765 2 + 609 lipoprotein HlpB - none -
fig|6666666.229934.peg.711 CDS CP012958.1 718913 719794 2 + 882 Murein-DD-endopeptidase (EC 3.4.99.-) Peptidoglycan Biosynthesis
fig|6666666.229934.peg.712 CDS CP012958.1 719972 721300 2 + 1329 Chromosome partition protein MukF DNA structural proteins, bacterial;
MukBEF Chromosome Condensation
fig|6666666.229934.peg.713 CDS CP012958.1 721328 721465 2 + 138 hypothetical protein - none -
fig|6666666.229934.peg.714 CDS CP012958.1 721480 724941 1 + 3462 Putative 2-acylglycerophosphoethanolamine acyltransferase / acyl-acyl carrier protein synthetase (EC 6.2.1.20) - none -
fig|6666666.229934.peg.715 CDS CP012958.1 724962 725702 3 + 741 Chromosome partition protein MukE DNA structural proteins, bacterial;
MukBEF Chromosome Condensation
fig|6666666.229934.peg.716 CDS CP012958.1 725702 730192 2 + 4491 Chromosome partition protein MukB DNA structural proteins, bacterial;
MukBEF Chromosome Condensation
fig|6666666.229934.peg.717 CDS CP012958.1 730268 731122 2 + 855 Integral membrane protein - none -
fig|6666666.229934.peg.718 CDS CP012958.1 731151 732578 3 + 1428 Exodeoxyribonuclease I (EC 3.1.11.1) DNA Repair Base Excision
fig|6666666.229934.peg.719 CDS CP012958.1 732826 732999 1 + 174 hypothetical protein - none -
fig|6666666.229934.peg.720 CDS CP012958.1 732996 733802 3 + 807 Mobile element protein - none -
fig|6666666.229934.peg.721 CDS CP012958.1 734122 734739 1 + 618 FIG00698503: hypothetical protein - none -
fig|6666666.229934.peg.722 CDS CP012958.1 734867 735157 2 + 291 FIG00698722: hypothetical protein - none -
fig|6666666.229934.peg.723 CDS CP012958.1 735978 736463 3 + 486 Ferritin-like protein 2 - none -
fig|6666666.229934.peg.724 CDS CP012958.1 736479 736976 3 + 498 Ferritin-like protein 2 - none -
fig|6666666.229934.peg.725 CDS CP012958.1 737208 737038 -3 - 171 hypothetical protein - none -
fig|6666666.229934.peg.726 CDS CP012958.1 737317 738090 1 + 774 Fumarate and nitrate reduction regulatory protein Oxidative stress
fig|6666666.229934.peg.727 CDS CP012958.1 738209 739141 2 + 933 Universal stress protein E Universal stress protein family
fig|6666666.229934.peg.728 CDS CP012958.1 739268 740104 2 + 837 ABC-type Co2+ transport system, periplasmic component - none -
fig|6666666.229934.peg.729 CDS CP012958.1 742795 740189 -1 - 2607 DNA topoisomerase I (EC 5.99.1.2) CBSS-272943.3.peg.1367;
Conserved gene cluster associated with Met-tRNA formyltransferase;
DNA topoisomerases, Type I, ATP-independent
fig|6666666.229934.peg.730 CDS CP012958.1 743869 743033 -1 - 837 COG0613, Predicted metal-dependent phosphoesterases (PHP family) YrdC-YciO-Sua5 protein family;
tRNA modification Bacteria
fig|6666666.229934.peg.731 CDS CP012958.1 744902 743883 -2 - 1020 Dihydroorotate dehydrogenase (EC 1.3.3.1) De Novo Pyrimidine Synthesis
fig|6666666.229934.peg.732 CDS CP012958.1 747584 744975 -2 - 2610 Membrane alanine aminopeptidase N (EC 3.4.11.2) Aminopeptidases (EC 3.4.11.-)
fig|6666666.229934.peg.733 CDS CP012958.1 748006 749196 1 + 1191 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229934.peg.734 CDS CP012958.1 749810 749247 -2 - 564 Transcriptional regulator, TetR family - none -
fig|6666666.229934.peg.735 CDS CP012958.1 749958 750938 3 + 981 HlyD family secretion protein - none -
fig|6666666.229934.peg.736 CDS CP012958.1 750941 753685 2 + 2745 ABC-type multidrug transport system, permease component - none -
fig|6666666.229934.peg.737 CDS CP012958.1 753687 754814 3 + 1128 ABC-type multidrug transport system, permease component - none -
fig|6666666.229934.peg.738 CDS CP012958.1 754834 756252 1 + 1419 Outer membrane component of tripartite multidrug resistance system Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria
fig|6666666.229934.peg.739 CDS CP012958.1 756230 756361 2 + 132 hypothetical protein - none -
fig|6666666.229934.peg.740 CDS CP012958.1 756380 757399 2 + 1020 Vitamin B12 ABC transporter, permease component BtuC - none -
fig|6666666.229934.peg.741 CDS CP012958.1 757399 758193 1 + 795 Glutathione synthetase (EC 6.3.2.3) Cluster containing Glutathione synthetase;
Glutathione: Biosynthesis and gamma-glutamyl cycle;
Heat shock dnaK gene cluster extended
fig|6666666.229934.peg.742 CDS CP012958.1 759220 758543 -1 - 678 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins Ton and Tol transport systems
fig|6666666.229934.peg.743 CDS CP012958.1 760064 759315 -2 - 750 ABC transporter ATP-binding protein - none -
fig|6666666.229934.peg.744 CDS CP012958.1 761074 760061 -1 - 1014 Vitamin B12 ABC transporter, permease component BtuC - none -
fig|6666666.229934.peg.745 CDS CP012958.1 762075 761074 -3 - 1002 ABC transporter, solute-binding protein - none -
fig|6666666.229934.peg.746 CDS CP012958.1 762232 762783 1 + 552 FIG00697418: hypothetical protein - none -
fig|6666666.229934.peg.747 CDS CP012958.1 762785 764797 2 + 2013 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins Ton and Tol transport systems
fig|6666666.229934.peg.748 CDS CP012958.1 765303 764887 -3 - 417 putative membrane protein - none -
fig|6666666.229934.peg.749 CDS CP012958.1 765444 766409 3 + 966 tRNA(Cytosine32)-2-thiocytidine synthetase CBSS-326442.4.peg.1852;
tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229934.peg.750 CDS CP012958.1 766992 766504 -3 - 489 Probable lipoprotein nlpC precursor - none -
fig|6666666.229934.peg.751 CDS CP012958.1 767340 767044 -3 - 297 Integration host factor alpha subunit DNA structural proteins, bacterial
fig|6666666.229934.peg.752 CDS CP012958.1 769734 767344 -3 - 2391 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) tRNA aminoacylation, Phe
fig|6666666.229934.peg.753 CDS CP012958.1 770743 769754 -1 - 990 Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20) tRNA aminoacylation, Phe
fig|6666666.229934.peg.754 CDS CP012958.1 771958 771083 -1 - 876 Probable protease htpX homolog - none -
fig|6666666.229934.peg.755 CDS CP012958.1 772641 773576 3 + 936 Arabinose 5-phosphate isomerase (EC 5.3.1.13) KDO2-Lipid A biosynthesis
fig|6666666.229934.peg.756 CDS CP012958.1 773576 774130 2 + 555 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC 3.1.3.45) KDO2-Lipid A biosynthesis
fig|6666666.229934.peg.757 CDS CP012958.1 774298 775845 1 + 1548 Anthranilate synthase, aminase component (EC 4.1.3.27) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229934.peg.758 CDS CP012958.1 775856 776446 2 + 591 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229934.peg.759 CDS CP012958.1 776520 776912 3 + 393 putative - none -
fig|6666666.229934.peg.760 CDS CP012958.1 776924 777925 2 + 1002 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) Auxin biosynthesis;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229934.peg.761 CDS CP012958.1 778020 778298 3 + 279 HigB toxin protein Toxin-antitoxin replicon stabilization systems
fig|6666666.229934.peg.762 CDS CP012958.1 778308 778586 3 + 279 HigA protein (antitoxin to HigB) Toxin-antitoxin replicon stabilization systems
fig|6666666.229934.peg.763 CDS CP012958.1 778595 780025 2 + 1431 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24) Auxin biosynthesis;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis;
Tryptophan synthesis
fig|6666666.229934.peg.764 CDS CP012958.1 780164 780331 2 + 168 hypothetical protein - none -
fig|6666666.229934.peg.765 CDS CP012958.1 780480 780755 3 + 276 [NiFe] hydrogenase metallocenter assembly protein HybG G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229934.peg.766 CDS CP012958.1 781779 782045 3 + 267 Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3) Na+ translocating decarboxylases and related biotin-dependent enzymes;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229934.peg.767 CDS CP012958.1 782061 783857 3 + 1797 Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3) Na+ translocating decarboxylases and related biotin-dependent enzymes;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229934.peg.768 CDS CP012958.1 783868 785172 1 + 1305 Oxaloacetate decarboxylase beta chain (EC 4.1.1.3) Na+ translocating decarboxylases and related biotin-dependent enzymes;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229934.peg.769 CDS CP012958.1 788020 785576 -1 - 2445 Outer membrane receptor for lactoferrin or transferrin, TonB-dependent protein A - none -
fig|6666666.229934.peg.770 CDS CP012958.1 788739 788527 -3 - 213 hypothetical protein - none -
fig|6666666.229934.peg.771 CDS CP012958.1 788740 789477 1 + 738 3-hydroxypropionate dehydrogenase (EC 1.1.1.298) - none -
fig|6666666.229934.peg.772 CDS CP012958.1 789487 790680 1 + 1194 Tryptophan synthase beta chain (EC 4.2.1.20) Auxin biosynthesis;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229934.peg.773 CDS CP012958.1 790683 791489 3 + 807 Tryptophan synthase alpha chain (EC 4.2.1.20) Auxin biosynthesis;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229934.peg.774 CDS CP012958.1 791764 793449 1 + 1686 Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) Ribonucleotide reduction
fig|6666666.229934.peg.775 CDS CP012958.1 793582 794571 1 + 990 Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) Ribonucleotide reduction
fig|6666666.229934.peg.776 CDS CP012958.1 794857 796263 1 + 1407 Pyruvate kinase (EC 2.7.1.40) Entner-Doudoroff Pathway;
Glycerate metabolism;
Glycolysis and Gluconeogenesis;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229934.peg.777 CDS CP012958.1 796669 796367 -1 - 303 Autoinducer 2 (AI-2) modifying protein LsrG Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229934.peg.778 CDS CP012958.1 797580 796702 -3 - 879 Autoinducer 2 (AI-2) aldolase LsrF (EC 4.2.1.-) Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229934.peg.779 CDS CP012958.1 798701 797604 -2 - 1098 Autoinducer 2 (AI-2) ABC transport system, periplasmic AI-2 binding protein LsrB Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229934.peg.780 CDS CP012958.1 799730 798810 -2 - 921 Autoinducer 2 (AI-2) ABC transport system, membrane channel protein LsrD Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229934.peg.781 CDS CP012958.1 799860 799744 -3 - 117 Autoinducer 2 (AI-2) ABC transport system, membrane channel protein LsrC Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229934.peg.782 CDS CP012958.1 800057 799836 -2 - 222 Autoinducer 2 (AI-2) ABC transport system, fused AI2 transporter subunits and ATP-binding component Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229934.peg.783 CDS CP012958.1 800271 800044 -3 - 228 Autoinducer 2 (AI-2) ABC transport system, fused AI2 transporter subunits and ATP-binding component Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229934.peg.784 CDS CP012958.1 800515 801480 1 + 966 LsrR, transcriptional repressor of lsr operon Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229934.peg.785 CDS CP012958.1 801530 803104 2 + 1575 Autoinducer 2 (AI-2) kinase LsrK (EC 2.7.1.-) Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229934.peg.786 CDS CP012958.1 803921 803193 -2 - 729 Dethiobiotin synthetase (EC 6.3.3.3) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229934.peg.787 CDS CP012958.1 805227 803998 -3 - 1230 Mlc, transcriptional repressor of MalT (the transcriptional activator of maltose regulon) and manXYZ operon Maltose and Maltodextrin Utilization
fig|6666666.229934.peg.788 CDS CP012958.1 805423 806826 1 + 1404 Asparaginyl-tRNA synthetase (EC 6.1.1.22) tRNA aminoacylation, Asp and Asn;
tRNA modification Archaea
fig|6666666.229934.peg.789 CDS CP012958.1 807450 806989 -3 - 462 Stringent starvation protein B Carbon Starvation
fig|6666666.229934.peg.790 CDS CP012958.1 808103 807462 -2 - 642 Stringent starvation protein A Carbon Starvation
fig|6666666.229934.peg.791 CDS CP012958.1 808758 808303 -3 - 456 Molybdenum cofactor biosynthesis protein MoaE Molybdenum cofactor biosynthesis;
ar-104-EC Molybdenum cofactor biosynthesis moaABCDE
fig|6666666.229934.peg.792 CDS CP012958.1 809007 808759 -3 - 249 Molybdenum cofactor biosynthesis protein MoaD Molybdenum cofactor biosynthesis;
ar-104-EC Molybdenum cofactor biosynthesis moaABCDE
fig|6666666.229934.peg.793 CDS CP012958.1 809528 809007 -2 - 522 Molybdenum cofactor biosynthesis protein MoaC Molybdenum cofactor biosynthesis;
ar-104-EC Molybdenum cofactor biosynthesis moaABCDE
fig|6666666.229934.peg.794 CDS CP012958.1 810554 809541 -2 - 1014 Molybdenum cofactor biosynthesis protein MoaA Molybdenum cofactor biosynthesis;
ar-104-EC Molybdenum cofactor biosynthesis moaABCDE
fig|6666666.229934.peg.795 CDS CP012958.1 810912 811880 3 + 969 FIG002813: LPPG:FO 2-phospho-L-lactate transferase like, CofD-like - none -
fig|6666666.229934.peg.796 CDS CP012958.1 812619 811945 -3 - 675 Putative DNA-binding protein in cluster with Type I restriction-modification system Restriction-Modification System
fig|6666666.229934.peg.797 CDS CP012958.1 813119 813823 2 + 705 Alpha-aspartyl dipeptidase Peptidase E (EC 3.4.13.21) Dipeptidases (EC 3.4.13.-)
fig|6666666.229934.peg.798 CDS CP012958.1 815364 813907 -3 - 1458 tRNA S(4)U 4-thiouridine synthase (former ThiI) / Rhodanese-like domain required for thiamine synthesis Thiamin biosynthesis;
Thiamin biosynthesis;
tRNA modification Archaea;
tRNA modification Archaea;
tRNA modification Bacteria;
tRNA modification Bacteria
fig|6666666.229934.peg.799 CDS CP012958.1 815670 816770 3 + 1101 Cytochrome c-type protein TorY - none -
fig|6666666.229934.peg.800 CDS CP012958.1 816831 819311 3 + 2481 Trimethylamine-N-oxide reductase (EC 1.6.6.9) - none -
fig|6666666.229934.peg.801 CDS CP012958.1 820161 819382 -3 - 780 Protein of unknown function DUF419 - none -
fig|6666666.229934.peg.802 CDS CP012958.1 820391 821848 2 + 1458 2-oxoglutarate/malate translocator - none -
fig|6666666.229934.peg.803 CDS CP012958.1 822063 822317 3 + 255 RelB/StbD replicon stabilization protein (antitoxin to RelE/StbE) Toxin-antitoxin replicon stabilization systems
fig|6666666.229934.peg.804 CDS CP012958.1 822314 822466 2 + 153 StbE replicon stabilization toxin - none -
fig|6666666.229934.peg.805 CDS CP012958.1 822450 822596 3 + 147 RelE/StbE replicon stabilization toxin Toxin-antitoxin replicon stabilization systems
fig|6666666.229934.peg.806 CDS CP012958.1 823394 822609 -2 - 786 tRNA pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses;
tRNA modification Archaea;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229934.peg.807 CDS CP012958.1 823947 823555 -3 - 393 SSU ribosomal protein S9p (S16e) - none -
fig|6666666.229934.peg.808 CDS CP012958.1 824392 823964 -1 - 429 LSU ribosomal protein L13p (L13Ae) Ribosome LSU bacterial
fig|6666666.229934.peg.809 CDS CP012958.1 825230 824634 -2 - 597 hypothetical protein - none -
fig|6666666.229934.peg.810 CDS CP012958.1 827222 825243 -2 - 1980 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) DNA repair, bacterial RecBCD pathway
fig|6666666.229934.peg.811 CDS CP012958.1 830890 827222 -1 - 3669 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) DNA repair, bacterial RecBCD pathway
fig|6666666.229934.peg.812 CDS CP012958.1 831317 830961 -2 - 357 DsrE-related protein - none -
fig|6666666.229934.peg.813 CDS CP012958.1 832272 831742 -3 - 531 3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabA form (EC 4.2.1.59) Fatty Acid Biosynthesis FASII
fig|6666666.229934.peg.814 CDS CP012958.1 834199 832415 -1 - 1785 ATP-dependent protease La (EC 3.4.21.53) Type II Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229934.peg.815 CDS CP012958.1 834346 834792 1 + 447 Macrodomain Ter protein YcbG - none -
fig|6666666.229934.peg.816 CDS CP012958.1 835067 834858 -2 - 210 Cold shock protein CspD Cold shock, CspA family of proteins
fig|6666666.229934.peg.817 CDS CP012958.1 835422 835258 -3 - 165 hypothetical protein - none -
fig|6666666.229934.peg.818 CDS CP012958.1 836189 835476 -2 - 714 tRNA pseudouridine synthase C (EC 4.2.1.70) RNA pseudouridine syntheses;
tRNA modification Bacteria
fig|6666666.229934.peg.819 CDS CP012958.1 836500 836186 -1 - 315 Hypothetical protein YqcC (clustered with tRNA pseudouridine synthase C) - none -
fig|6666666.229934.peg.820 CDS CP012958.1 836607 837389 3 + 783 Zn-ribbon-containing, possibly nucleic-acid-binding protein - none -
fig|6666666.229934.peg.821 CDS CP012958.1 837398 838237 2 + 840 NADPH dependent preQ0 reductase (EC 1.7.1.13) - none -
fig|6666666.229934.peg.822 CDS CP012958.1 839325 838285 -3 - 1041 Phosphoglycerate transport system transcriptional regulatory protein PgtA Phosphoglycerate transport system
fig|6666666.229934.peg.823 CDS CP012958.1 839534 839331 -2 - 204 Phosphoglycerate transport system transcriptional regulatory protein PgtA Phosphoglycerate transport system
fig|6666666.229934.peg.824 CDS CP012958.1 841509 839527 -3 - 1983 Phosphoglycerate transport system sensor protein PgtB (EC 2.7.3.-) Phosphoglycerate transport system
fig|6666666.229934.peg.825 CDS CP012958.1 842492 841506 -2 - 987 Phosphoglycerate transport regulatory protein PgtC Phosphoglycerate transport system
fig|6666666.229934.peg.826 CDS CP012958.1 843097 843600 1 + 504 ABC-type Fe3+ transport system, periplasmic component - none -
fig|6666666.229934.peg.827 CDS CP012958.1 844387 843947 -1 - 441 Putative transporting ATPase - none -
fig|6666666.229934.peg.828 CDS CP012958.1 846436 844484 -1 - 1953 Cell division protein FtsH (EC 3.4.24.-) Bacterial Cell Division;
Cell division-ribosomal stress proteins cluster;
Folate biosynthesis cluster
fig|6666666.229934.peg.829 CDS CP012958.1 847172 846543 -2 - 630 Cell division protein FtsJ / Ribosomal RNA large subunit methyltransferase E (EC 2.1.1.-) ## LSU rRNA Um2552 Bacterial Cell Division;
RNA methylation
fig|6666666.229934.peg.830 CDS CP012958.1 848176 847307 -1 - 870 Formyltetrahydrofolate deformylase (EC 3.5.1.10) 5-FCL-like protein;
One-carbon metabolism by tetrahydropterines
fig|6666666.229934.peg.831 CDS CP012958.1 848626 848228 -1 - 399 DNA-binding protein H-NS - none -
fig|6666666.229934.peg.832 CDS CP012958.1 849067 850599 1 + 1533 Na+/H+ antiporter - none -
fig|6666666.229934.peg.834 CDS CP012958.1 857433 856606 -3 - 828 Glutamate racemase (EC 5.1.1.3) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Peptidoglycan Biosynthesis
fig|6666666.229934.peg.835 CDS CP012958.1 857961 857464 -3 - 498 Chorismate--pyruvate lyase (EC 4.1.3.40) Ubiquinone Biosynthesis
fig|6666666.229934.peg.836 CDS CP012958.1 860035 857954 -1 - 2082 ATP-dependent DNA helicase RecG (EC 3.6.1.-) - none -
fig|6666666.229934.peg.837 CDS CP012958.1 862159 860036 -1 - 2124 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II / Guanosine-3@1,5@1-bis(diphosphate) 3@1-pyrophosphohydrolase (EC 3.1.7.2) CBSS-176299.4.peg.1292;
CBSS-176299.4.peg.1292;
Stringent Response, (p)ppGpp metabolism;
Stringent Response, (p)ppGpp metabolism
fig|6666666.229934.peg.838 CDS CP012958.1 862471 862205 -1 - 267 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) CBSS-176299.4.peg.1292;
RNA polymerase bacterial
fig|6666666.229934.peg.839 CDS CP012958.1 863239 862529 -1 - 711 Guanylate kinase (EC 2.7.4.8) CBSS-323097.3.peg.2594;
Purine conversions
fig|6666666.229934.peg.840 CDS CP012958.1 863409 864413 3 + 1005 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis;
Pyridoxin (Vitamin B6) Biosynthesis
fig|6666666.229934.peg.841 CDS CP012958.1 864923 864507 -2 - 417 conserved hypothetical protein; possible membrane protein - none -
fig|6666666.229934.peg.842 CDS CP012958.1 865044 865424 3 + 381 Putative oligoketide cyclase/lipid transport protein, similarity with yeast ubiquinone-binding protein YOL008W - none -
fig|6666666.229934.peg.843 CDS CP012958.1 865417 865710 1 + 294 UPF0125 protein yfjF - none -
fig|6666666.229934.peg.844 CDS CP012958.1 865743 866936 3 + 1194 FIG074102: hypothetical protein - none -
fig|6666666.229934.peg.845 CDS CP012958.1 866943 868277 3 + 1335 Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) DNA repair, bacterial;
Purine salvage cluster
fig|6666666.229934.peg.846 CDS CP012958.1 869137 868283 -1 - 855 FIG000506: Predicted P-loop-containing kinase - none -
fig|6666666.229934.peg.847 CDS CP012958.1 869686 869165 -1 - 522 PTS IIA-like nitrogen-regulatory protein PtsN - none -
fig|6666666.229934.peg.848 CDS CP012958.1 870415 869690 -1 - 726 Lipopolysaccharide ABC transporter, ATP-binding protein LptB KDO2-Lipid A biosynthesis;
Lipopolysaccharide assembly
fig|6666666.229934.peg.849 CDS CP012958.1 870939 870421 -3 - 519 LptA, protein essential for LPS transport across the periplasm KDO2-Lipid A biosynthesis;
Lipopolysaccharide assembly
fig|6666666.229934.peg.850 CDS CP012958.1 871495 870920 -1 - 576 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters Lipopolysaccharide assembly
fig|6666666.229934.peg.851 CDS CP012958.1 871779 872576 3 + 798 Uncharacterized ABC transporter, ATP-binding protein YrbF CBSS-12149.1.peg.3301;
Lipopolysaccharide assembly
fig|6666666.229934.peg.852 CDS CP012958.1 872570 873355 2 + 786 Uncharacterized ABC transporter, permease component YrbE CBSS-12149.1.peg.3301;
Lipopolysaccharide assembly
fig|6666666.229934.peg.853 CDS CP012958.1 873378 873887 3 + 510 Uncharacterized ABC transporter, periplasmic component YrbD CBSS-12149.1.peg.3301;
Lipopolysaccharide assembly
fig|6666666.229934.peg.854 CDS CP012958.1 873916 874557 1 + 642 Uncharacterized ABC transporter, auxiliary component YrbC CBSS-12149.1.peg.3301;
Lipopolysaccharide assembly
fig|6666666.229934.peg.855 CDS CP012958.1 874651 874920 1 + 270 Uncharacterized protein YrbB CBSS-12149.1.peg.3301
fig|6666666.229934.peg.856 CDS CP012958.1 874920 875177 3 + 258 YrbA protein Broadly distributed proteins not in subsystems;
CBSS-12149.1.peg.3301
fig|6666666.229934.peg.857 CDS CP012958.1 875194 876465 1 + 1272 UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7) CBSS-12149.1.peg.3301;
Peptidoglycan Biosynthesis;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229934.peg.858 CDS CP012958.1 877216 878163 1 + 948 Putative secretion ATPase - none -
fig|6666666.229934.peg.859 CDS CP012958.1 879573 878509 -3 - 1065 glycosyl transferase, family 2 - none -
fig|6666666.229934.peg.860 CDS CP012958.1 880365 880075 -3 - 291 FIG00696346: hypothetical protein - none -
fig|6666666.229934.peg.861 CDS CP012958.1 880568 881998 2 + 1431 Long-chain fatty acid transport protein - none -
fig|6666666.229934.peg.862 CDS CP012958.1 882075 882614 3 + 540 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) DNA repair, bacterial
fig|6666666.229934.peg.863 CDS CP012958.1 882611 883279 2 + 669 DNA mismatch repair endonuclease MutH DNA repair, bacterial
fig|6666666.229934.peg.864 CDS CP012958.1 883344 884069 3 + 726 Integral membrane protein TerC - none -
fig|6666666.229934.peg.865 CDS CP012958.1 884361 884534 3 + 174 hypothetical protein - none -
fig|6666666.229934.peg.866 CDS CP012958.1 884531 885337 2 + 807 Mobile element protein - none -
fig|6666666.229934.peg.867 CDS CP012958.1 886842 885433 -3 - 1410 Glutamine synthetase type I (EC 6.3.1.2) Ammonia assimilation;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Glutamine synthetases;
Peptidoglycan Biosynthesis
fig|6666666.229934.peg.868 CDS CP012958.1 887229 889082 3 + 1854 GTP-binding protein TypA/BipA Universal GTPases
fig|6666666.229934.peg.869 CDS CP012958.1 889192 889079 -1 - 114 hypothetical protein - none -
fig|6666666.229934.peg.870 CDS CP012958.1 889308 892103 3 + 2796 TolA protein Ton and Tol transport systems
fig|6666666.229934.peg.871 CDS CP012958.1 892631 892167 -2 - 465 Thiol peroxidase, Bcp-type (EC 1.11.1.15) CBSS-316057.3.peg.3521;
Thioredoxin-disulfide reductase
fig|6666666.229934.peg.872 CDS CP012958.1 892789 893682 1 + 894 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229934.peg.873 CDS CP012958.1 893796 894500 3 + 705 Outer membrane protein NlpB, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and YfgL); Lipoprotein-34 precursor Lipopolysaccharide assembly
fig|6666666.229934.peg.874 CDS CP012958.1 894631 894789 1 + 159 Outer membrane protein NlpB, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and YfgL); Lipoprotein-34 precursor Lipopolysaccharide assembly
fig|6666666.229934.peg.875 CDS CP012958.1 894924 896435 3 + 1512 L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1) / Osmotic adaptation Choline and Betaine Uptake and Betaine Biosynthesis
fig|6666666.229934.peg.876 CDS CP012958.1 896750 897586 2 + 837 L-proline glycine betaine ABC transport system permease protein ProV (TC 3.A.1.12.1) Choline and Betaine Uptake and Betaine Biosynthesis
fig|6666666.229934.peg.877 CDS CP012958.1 898334 897639 -2 - 696 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC A Hypothetical Protein Related to Proline Metabolism;
CBSS-630.2.peg.3360
fig|6666666.229934.peg.878 CDS CP012958.1 899763 898327 -3 - 1437 Nicotinamide phosphoribosyltransferase (EC 2.4.2.12) NAD and NADP cofactor biosynthesis global
fig|6666666.229934.peg.879 CDS CP012958.1 899854 899985 1 + 132 hypothetical protein - none -
fig|6666666.229934.peg.880 CDS CP012958.1 900074 902521 2 + 2448 Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) CBSS-216591.1.peg.168;
Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch;
Methionine Biosynthesis;
Threonine and Homoserine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229934.peg.881 CDS CP012958.1 902534 903478 2 + 945 Homoserine kinase (EC 2.7.1.39) CBSS-269482.1.peg.1294;
Methionine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229934.peg.882 CDS CP012958.1 903506 903946 2 + 441 hypothetical protein - none -
fig|6666666.229934.peg.883 CDS CP012958.1 904002 905276 3 + 1275 Threonine synthase (EC 4.2.3.1) Threonine and Homoserine Biosynthesis
fig|6666666.229934.peg.884 CDS CP012958.1 905311 906054 1 + 744 4@1-phosphopantetheinyl transferase (EC 2.7.8.-) Fatty Acid Biosynthesis FASII
fig|6666666.229934.peg.885 CDS CP012958.1 906150 907403 3 + 1254 HflK protein Hfl operon;
Scaffold proteins for [4Fe-4S] cluster assembly (MRP family)
fig|6666666.229934.peg.886 CDS CP012958.1 907403 908290 2 + 888 HflC protein Hfl operon;
Scaffold proteins for [4Fe-4S] cluster assembly (MRP family)
fig|6666666.229934.peg.887 CDS CP012958.1 908578 908423 -1 - 156 hypothetical protein - none -
fig|6666666.229934.peg.888 CDS CP012958.1 908580 908909 3 + 330 DNA uptake protein and related DNA-binding proteins - none -
fig|6666666.229934.peg.889 CDS CP012958.1 908935 909615 1 + 681 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) Heat shock dnaK gene cluster extended;
Housecleaning nucleoside triphosphate pyrophosphatases
fig|6666666.229934.peg.890 CDS CP012958.1 909654 909977 3 + 324 PlcB, ORFX, ORFP, ORFB, ORFA, ldh gene - none -
fig|6666666.229934.peg.891 CDS CP012958.1 909977 911146 2 + 1170 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB CBSS-630.2.peg.3360;
Heat shock dnaK gene cluster extended;
Heme and Siroheme Biosynthesis;
Queuosine-Archaeosine Biosynthesis
fig|6666666.229934.peg.892 CDS CP012958.1 911245 911901 1 + 657 Ribose 5-phosphate isomerase A (EC 5.3.1.6) D-ribose utilization;
Pentose phosphate pathway
fig|6666666.229934.peg.893 CDS CP012958.1 911920 913152 1 + 1233 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) Glycine and Serine Utilization;
Pyridoxin (Vitamin B6) Biosynthesis;
Serine Biosynthesis
fig|6666666.229934.peg.894 CDS CP012958.1 913161 913280 3 + 120 hypothetical protein - none -
fig|6666666.229934.peg.895 CDS CP012958.1 913462 914508 1 + 1047 iron chelatin ABC transporter periplasmic-binding protein - none -
fig|6666666.229934.peg.896 CDS CP012958.1 915235 914594 -1 - 642 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) D-Galacturonate and D-Glucuronate Utilization;
Entner-Doudoroff Pathway
fig|6666666.229934.peg.897 CDS CP012958.1 916632 915244 -3 - 1389 Uronate isomerase (EC 5.3.1.12) D-Galacturonate and D-Glucuronate Utilization
fig|6666666.229934.peg.898 CDS CP012958.1 917487 916642 -3 - 846 D-mannonate oxidoreductase (EC 1.1.1.57) D-Galacturonate and D-Glucuronate Utilization
fig|6666666.229934.peg.899 CDS CP012958.1 918443 917499 -2 - 945 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) D-Galacturonate and D-Glucuronate Utilization;
D-gluconate and ketogluconates metabolism;
Entner-Doudoroff Pathway
fig|6666666.229934.peg.900 CDS CP012958.1 919490 918498 -2 - 993 TRAP-type C4-dicarboxylate transport system, periplasmic component TRAP Transporter collection
fig|6666666.229934.peg.901 CDS CP012958.1 920203 921504 1 + 1302 TRAP-type C4-dicarboxylate transport system, large permease component TRAP Transporter collection
fig|6666666.229934.peg.902 CDS CP012958.1 921528 923903 3 + 2376 Alpha-glucosidase (EC 3.2.1.20) D-Galacturonate and D-Glucuronate Utilization;
Maltose and Maltodextrin Utilization
fig|6666666.229934.peg.903 CDS CP012958.1 923918 924673 2 + 756 Hexuronate utilization operon transcriptional repressor ExuR D-Galacturonate and D-Glucuronate Utilization
fig|6666666.229934.peg.904 CDS CP012958.1 924693 925877 3 + 1185 Mannonate dehydratase (EC 4.2.1.8) D-Galacturonate and D-Glucuronate Utilization
fig|6666666.229934.peg.905 CDS CP012958.1 925915 926472 1 + 558 hypothetical protein - none -
fig|6666666.229934.peg.906 CDS CP012958.1 927001 927792 1 + 792 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229934.peg.907 CDS CP012958.1 929572 927818 -1 - 1755 Putative sulfate permease - none -
fig|6666666.229934.peg.908 CDS CP012958.1 930003 932420 3 + 2418 ATP-dependent protease La (EC 3.4.21.53) Type I Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229934.peg.909 CDS CP012958.1 934332 932482 -3 - 1851 RNA polymerase sigma factor RpoD CBSS-349161.4.peg.2417;
Macromolecular synthesis operon;
Transcription initiation, bacterial sigma factors
fig|6666666.229934.peg.910 CDS CP012958.1 936165 934408 -3 - 1758 DNA primase (EC 2.7.7.-) CBSS-349161.4.peg.2417;
Macromolecular synthesis operon
fig|6666666.229934.peg.911 CDS CP012958.1 936502 936287 -1 - 216 SSU ribosomal protein S21p Macromolecular synthesis operon
fig|6666666.229934.peg.912 CDS CP012958.1 936537 936704 3 + 168 hypothetical protein - none -
fig|6666666.229934.peg.913 CDS CP012958.1 936727 937755 1 + 1029 TsaD/Kae1/Qri7 protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Macromolecular synthesis operon;
YgjD and YeaZ;
YrdC-YciO-Sua5 protein family
fig|6666666.229934.peg.914 CDS CP012958.1 937820 938053 2 + 234 unknown - none -
fig|6666666.229934.peg.915 CDS CP012958.1 938056 938634 1 + 579 Thymidine kinase (EC 2.7.1.21) pyrimidine conversions
fig|6666666.229934.peg.916 CDS CP012958.1 940714 938702 -1 - 2013 DNA ligase (EC 6.5.1.2) DNA Repair Base Excision
fig|6666666.229934.peg.917 CDS CP012958.1 941853 940816 -3 - 1038 Cell division protein ZipA Bacterial Cytoskeleton
fig|6666666.229934.peg.918 CDS CP012958.1 941993 942817 2 + 825 Sulfate transporter, CysZ-type Cysteine Biosynthesis
fig|6666666.229934.peg.919 CDS CP012958.1 942918 943865 3 + 948 Cysteine synthase (EC 2.5.1.47) Cysteine Biosynthesis;
Methionine Biosynthesis
fig|6666666.229934.peg.920 CDS CP012958.1 943943 943830 -2 - 114 hypothetical protein - none -
fig|6666666.229934.peg.921 CDS CP012958.1 944231 944085 -2 - 147 hypothetical protein - none -
fig|6666666.229934.peg.922 CDS CP012958.1 944888 944307 -2 - 582 Hypothetical protein VC0266 (sugar utilization related?) VC0266
fig|6666666.229934.peg.923 CDS CP012958.1 946288 945197 -1 - 1092 GTP-binding and nucleic acid-binding protein YchF Universal GTPases
fig|6666666.229934.peg.924 CDS CP012958.1 947160 946477 -3 - 684 Peptidyl-tRNA hydrolase (EC 3.1.1.29) Cell division-ribosomal stress proteins cluster;
Sporulation-associated proteins with broader functions;
Transcription repair cluster;
Translation termination factors bacterial
fig|6666666.229934.peg.925 CDS CP012958.1 947526 948068 3 + 543 Mobile element protein - none -
fig|6666666.229934.peg.927 CDS CP012958.1 955744 954671 -1 - 1074 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) - none -
fig|6666666.229934.peg.928 CDS CP012958.1 955873 957156 1 + 1284 Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8) CBSS-196164.1.peg.461;
Heme and Siroheme Biosynthesis
fig|6666666.229934.peg.929 CDS CP012958.1 959823 957232 -3 - 2592 [Protein-PII] uridylyltransferase (EC 2.7.7.59) Ammonia assimilation;
CBSS-312309.3.peg.1965
fig|6666666.229934.peg.930 CDS CP012958.1 960689 959889 -2 - 801 Methionine aminopeptidase (EC 3.4.11.18) CBSS-312309.3.peg.1965;
Translation termination factors bacterial
fig|6666666.229934.peg.931 CDS CP012958.1 960823 961164 1 + 342 probable iron binding protein from the HesB_IscA_SufA family - none -
fig|6666666.229934.peg.932 CDS CP012958.1 961166 961381 2 + 216 hypothetical protein - none -
fig|6666666.229934.peg.933 CDS CP012958.1 961427 963820 2 + 2394 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) DNA uptake cluster;
Peptidoglycan Biosynthesis;
Type IV pilus
fig|6666666.229934.peg.934 CDS CP012958.1 964119 966026 3 + 1908 High-affinity Fe2+/Pb2+ permease precursor Iron transport system including ABC transporter
fig|6666666.229934.peg.935 CDS CP012958.1 966069 966590 3 + 522 Periplasmic protein p19 involved in high-affinity Fe2+ transport Iron transport system including ABC transporter
fig|6666666.229934.peg.936 CDS CP012958.1 966729 968159 3 + 1431 Fe2+ ABC transporter, substrate binding protein Iron transport system including ABC transporter
fig|6666666.229934.peg.937 CDS CP012958.1 968162 969487 2 + 1326 Cell division protein FtsX Bacterial Cell Division
fig|6666666.229934.peg.938 CDS CP012958.1 969498 970613 3 + 1116 Fe2+ ABC transporter, permease protein 2 Iron transport system including ABC transporter
fig|6666666.229934.peg.939 CDS CP012958.1 970615 971286 1 + 672 Fe2+ ABC transporter, ATP-binding subunit Iron transport system including ABC transporter
fig|6666666.229934.peg.940 CDS CP012958.1 971276 971767 2 + 492 Possible periplasmic thiredoxin Iron transport system including ABC transporter
fig|6666666.229934.peg.941 CDS CP012958.1 971774 972085 2 + 312 Cytochrome C553 (soluble cytochrome f) Iron transport system including ABC transporter;
Soluble cytochromes and functionally related electron carriers
fig|6666666.229934.peg.942 CDS CP012958.1 972174 972296 3 + 123 hypothetical protein - none -
fig|6666666.229934.peg.943 CDS CP012958.1 972413 973078 2 + 666 Phosphoglycolate phosphatase (EC 3.1.3.18) 2-phosphoglycolate salvage;
Glycolate, glyoxylate interconversions
fig|6666666.229934.peg.944 CDS CP012958.1 973242 973084 -3 - 159 hypothetical protein - none -
fig|6666666.229934.peg.945 CDS CP012958.1 974418 973270 -3 - 1149 Mobile element protein - none -
fig|6666666.229934.peg.946 CDS CP012958.1 975826 974825 -1 - 1002 Related to membrane proteins - none -
fig|6666666.229934.peg.947 CDS CP012958.1 979925 975876 -2 - 4050 HrpA-like helicases - none -
fig|6666666.229934.peg.948 CDS CP012958.1 980311 979922 -1 - 390 COG2363 - none -
fig|6666666.229934.peg.949 CDS CP012958.1 980914 980312 -1 - 603 putative membrane protein - none -
fig|6666666.229934.peg.950 CDS CP012958.1 981218 980889 -2 - 330 Glutaredoxin-related protein Glutaredoxins
fig|6666666.229934.peg.951 CDS CP012958.1 982600 981560 -1 - 1041 Outer membrane protein A precursor Osmoregulation
fig|6666666.229934.peg.952 CDS CP012958.1 983085 986138 3 + 3054 Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD Glycolate, glyoxylate interconversions
fig|6666666.229934.peg.953 CDS CP012958.1 986148 986570 3 + 423 FIG017415: ydiI hotdog fold superfamily - none -
fig|6666666.229934.peg.954 CDS CP012958.1 986563 987627 1 + 1065 Ferrochelatase, protoheme ferro-lyase (EC 4.99.1.1) Heme and Siroheme Biosynthesis
fig|6666666.229934.peg.955 CDS CP012958.1 987668 988168 2 + 501 Thiol peroxidase, Tpx-type (EC 1.11.1.15) Thioredoxin-disulfide reductase
fig|6666666.229934.peg.956 CDS CP012958.1 989518 988373 -1 - 1146 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism
fig|6666666.229934.peg.957 CDS CP012958.1 990377 989574 -2 - 804 Glucosamine-6-phosphate deaminase (EC 3.5.99.6) Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism
fig|6666666.229934.peg.958 CDS CP012958.1 991410 990532 -3 - 879 N-acetylneuraminate lyase (EC 4.1.3.3) Sialic Acid Metabolism
fig|6666666.229934.peg.959 CDS CP012958.1 992289 991420 -3 - 870 Sialic acid utilization regulator, RpiR family Sialic Acid Metabolism
fig|6666666.229934.peg.960 CDS CP012958.1 993186 992299 -3 - 888 N-acetylmannosamine kinase (EC 2.7.1.60) Sialic Acid Metabolism
fig|6666666.229934.peg.961 CDS CP012958.1 993901 993200 -1 - 702 N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9) Sialic Acid Metabolism
fig|6666666.229934.peg.962 CDS CP012958.1 994143 995129 3 + 987 TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein Sialic Acid Metabolism
fig|6666666.229934.peg.963 CDS CP012958.1 995193 997043 3 + 1851 TRAP-type transport system, large permease component, predicted N-acetylneuraminate transporter / TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229934.peg.964 CDS CP012958.1 997182 998312 3 + 1131 Sialic acid-induced transmembrane protein YjhT(NanM), possible mutarotase Sialic Acid Metabolism
fig|6666666.229934.peg.965 CDS CP012958.1 998561 1000027 2 + 1467 PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69) Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism;
Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229934.peg.966 CDS CP012958.1 1001773 1000703 -1 - 1071 Outer membrane protein A precursor Osmoregulation
fig|6666666.229934.peg.967 CDS CP012958.1 1004042 1002000 -2 - 2043 Excinuclease ABC subunit B DNA repair, UvrABC system
fig|6666666.229934.peg.968 CDS CP012958.1 1005685 1004654 -1 - 1032 putative membrane protein - none -
fig|6666666.229934.peg.969 CDS CP012958.1 1006365 1005700 -3 - 666 putative exported protein - none -
fig|6666666.229934.peg.970 CDS CP012958.1 1006768 1008414 1 + 1647 ABC transporter ATP-binding protein - none -
fig|6666666.229934.peg.971 CDS CP012958.1 1009405 1008518 -1 - 888 putative adhesin/invasin - none -
fig|6666666.229934.peg.972 CDS CP012958.1 1009908 1011806 3 + 1899 Topoisomerase IV subunit B (EC 5.99.1.-) DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.229934.peg.973 CDS CP012958.1 1012214 1012390 2 + 177 hypothetical protein - none -
fig|6666666.229934.peg.974 CDS CP012958.1 1012398 1014653 3 + 2256 Topoisomerase IV subunit A (EC 5.99.1.-) DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.229934.peg.975 CDS CP012958.1 1014937 1015548 1 + 612 Glutathione S-transferase (EC 2.5.1.18) Glutathione: Non-redox reactions
fig|6666666.229934.peg.976 CDS CP012958.1 1016309 1015599 -2 - 711 hypothetical protein - none -
fig|6666666.229934.peg.977 CDS CP012958.1 1016992 1016315 -1 - 678 FIG00904286: hypothetical protein - none -
fig|6666666.229934.peg.978 CDS CP012958.1 1017133 1017486 1 + 354 Bona fide RidA/YjgF/TdcF/RutC subgroup - none -
fig|6666666.229934.peg.979 CDS CP012958.1 1019072 1017528 -2 - 1545 hypothetical protein - none -
fig|6666666.229934.peg.980 CDS CP012958.1 1020028 1019075 -1 - 954 Glycosyltransferase - none -
fig|6666666.229934.peg.981 CDS CP012958.1 1021062 1020172 -3 - 891 hypothetical protein - none -
fig|6666666.229934.peg.982 CDS CP012958.1 1023110 1021065 -2 - 2046 DNA polymerase III subunits gamma and tau (EC 2.7.7.7) DNA processing cluster
fig|6666666.229934.peg.983 CDS CP012958.1 1023754 1023143 -1 - 612 Adenine phosphoribosyltransferase (EC 2.4.2.7) Purine conversions;
cAMP signaling in bacteria
fig|6666666.229934.peg.984 CDS CP012958.1 1024732 1023776 -1 - 957 Lipid A biosynthesis (KDO) 2-(lauroyl)-lipid IVA acyltransferase (EC 2.3.1.-) KDO2-Lipid A biosynthesis
fig|6666666.229934.peg.985 CDS CP012958.1 1025615 1024848 -2 - 768 Putative membrane protein YfcA - none -
fig|6666666.229934.peg.986 CDS CP012958.1 1026491 1025619 -2 - 873 Murein endopeptidase - none -
fig|6666666.229934.peg.987 CDS CP012958.1 1027586 1026513 -2 - 1074 Chorismate synthase (EC 4.2.3.5) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229934.peg.988 CDS CP012958.1 1030931 1027608 -2 - 3324 Potassium efflux system KefA protein / Small-conductance mechanosensitive channel Potassium homeostasis
fig|6666666.229934.peg.989 CDS CP012958.1 1032355 1030940 -1 - 1416 O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229934.peg.990 CDS CP012958.1 1032978 1032361 -3 - 618 SeqA protein, negative modulator of initiation of replication - none -
fig|6666666.229934.peg.991 CDS CP012958.1 1033065 1033865 3 + 801 Esterase ybfF (EC 3.1.-.-) - none -
fig|6666666.229934.peg.992 CDS CP012958.1 1034285 1034809 2 + 525 Flavodoxin 1 Flavodoxin
fig|6666666.229934.peg.993 CDS CP012958.1 1034828 1035268 2 + 441 Ferric uptake regulation protein FUR Bacterial RNA-metabolizing Zn-dependent hydrolases;
Oxidative stress
fig|6666666.229934.peg.994 CDS CP012958.1 1035436 1038099 1 + 2664 DNA gyrase subunit A (EC 5.99.1.3) Cell Division Subsystem including YidCD;
DNA gyrase subunits;
DNA replication cluster 1;
DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.229934.peg.995 CDS CP012958.1 1038167 1038517 2 + 351 FIG00782386: hypothetical protein - none -
fig|6666666.229934.peg.996 CDS CP012958.1 1038868 1038551 -1 - 318 Translation initiation factor SUI1-related protein Translation initiation factors bacterial
fig|6666666.229934.peg.997 CDS CP012958.1 1039566 1038874 -3 - 693 Orotidine 5@1-phosphate decarboxylase (EC 4.1.1.23) De Novo Pyrimidine Synthesis;
Riboflavin synthesis cluster
fig|6666666.229934.peg.998 CDS CP012958.1 1040786 1039596 -2 - 1191 Heat shock (predicted periplasmic) protein YciM, precursor Osmotic stress cluster
fig|6666666.229934.peg.999 CDS CP012958.1 1041082 1040786 -1 - 297 Inner membrane protein yciS - none -
fig|6666666.229934.peg.1000 CDS CP012958.1 1041468 1041181 -3 - 288 Integration host factor beta subunit DNA structural proteins, bacterial
fig|6666666.229934.peg.1001 CDS CP012958.1 1043176 1041530 -1 - 1647 SSU ribosomal protein S1p Cell division-ribosomal stress proteins cluster
fig|6666666.229934.peg.1002 CDS CP012958.1 1043951 1043274 -2 - 678 Cytidylate kinase (EC 2.7.4.25) pyrimidine conversions
fig|6666666.229934.peg.1003 CDS CP012958.1 1044837 1043944 -3 - 894 Membrane protein LAPB - none -
fig|6666666.229934.peg.1004 CDS CP012958.1 1045130 1046704 2 + 1575 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229934.peg.1005 CDS CP012958.1 1046748 1046882 3 + 135 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229934.peg.1006 CDS CP012958.1 1046960 1049734 2 + 2775 Probable zinc protease pqqL (EC 3.4.99.-) - none -
fig|6666666.229934.peg.1007 CDS CP012958.1 1050133 1049801 -1 - 333 Branched-chain amino acid transport protein azlD - none -
fig|6666666.229934.peg.1008 CDS CP012958.1 1050862 1050134 -1 - 729 Branched-chain amino acid transport protein AzlC - none -
fig|6666666.229934.peg.1009 CDS CP012958.1 1051799 1050867 -2 - 933 Transcriptional activator MetR LysR-family proteins in Escherichia coli;
LysR-family proteins in Salmonella enterica Typhimurium;
Methionine Biosynthesis
fig|6666666.229934.peg.1010 CDS CP012958.1 1052099 1054372 2 + 2274 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) Methionine Biosynthesis
fig|6666666.229934.peg.1011 CDS CP012958.1 1055334 1054702 -3 - 633 Superfamily II DNA/RNA helicases, SNF2 family - none -
fig|6666666.229934.peg.1012 CDS CP012958.1 1056057 1055353 -3 - 705 helicase (Snf2/Rad54 family) - none -
fig|6666666.229934.peg.1013 CDS CP012958.1 1057456 1056227 -1 - 1230 helicase (Snf2/Rad54 family) - none -
fig|6666666.229934.peg.1014 CDS CP012958.1 1057852 1057673 -1 - 180 CRISPR-associated helicase Cas3 CRISPRs
fig|6666666.229934.peg.1015 CDS CP012958.1 1058249 1058395 2 + 147 hypothetical protein - none -
fig|6666666.229934.peg.1016 CDS CP012958.1 1058406 1059068 3 + 663 Putative TEGT family carrier/transport protein CBSS-326442.4.peg.1852
fig|6666666.229934.peg.1017 CDS CP012958.1 1059154 1059483 1 + 330 tRNA 2-thiouridine synthesizing protein E (EC 2.8.1.-) CBSS-326442.4.peg.1852;
Lipoic acid synthesis cluster;
Sulfite reduction-associated complex DsrMKJOP and co-clustering genes
fig|6666666.229934.peg.1018 CDS CP012958.1 1059582 1060463 3 + 882 Manganese ABC transporter, periplasmic-binding protein SitA - none -
fig|6666666.229934.peg.1019 CDS CP012958.1 1060463 1061353 2 + 891 Manganese ABC transporter, ATP-binding protein SitB - none -
fig|6666666.229934.peg.1020 CDS CP012958.1 1061353 1062210 1 + 858 Manganese ABC transporter, inner membrane permease protein SitC - none -
fig|6666666.229934.peg.1021 CDS CP012958.1 1062207 1063055 3 + 849 Manganese ABC transporter, inner membrane permease protein SitD - none -
fig|6666666.229934.peg.1022 CDS CP012958.1 1063302 1063030 -3 - 273 Acylphosphate phosphohydrolase (EC 3.6.1.7), putative Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229934.peg.1023 CDS CP012958.1 1063447 1064121 1 + 675 UPF0319 protein YccT precursor CBSS-83333.1.peg.946
fig|6666666.229934.peg.1024 CDS CP012958.1 1064184 1064573 3 + 390 Methylglyoxal synthase (EC 4.2.3.3) CBSS-83333.1.peg.946;
Methylglyoxal Metabolism
fig|6666666.229934.peg.1025 CDS CP012958.1 1064634 1065107 3 + 474 Inner membrane protein YccF CBSS-83333.1.peg.946
fig|6666666.229934.peg.1026 CDS CP012958.1 1065116 1067257 2 + 2142 Putative efflux (PET) family inner membrane protein YccS CBSS-83333.1.peg.946
fig|6666666.229934.peg.1027 CDS CP012958.1 1067760 1067254 -3 - 507 FIG001674: hypothetical protein - none -
fig|6666666.229934.peg.1028 CDS CP012958.1 1067823 1068773 3 + 951 Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p YrdC-YciO-Sua5 protein family
fig|6666666.229934.peg.1029 CDS CP012958.1 1069884 1068940 -3 - 945 Transketolase, C-terminal section (EC 2.2.1.1) Pentose phosphate pathway
fig|6666666.229934.peg.1030 CDS CP012958.1 1070698 1069874 -1 - 825 Transketolase, N-terminal section (EC 2.2.1.1) Pentose phosphate pathway
fig|6666666.229934.peg.1031 CDS CP012958.1 1071916 1070708 -1 - 1209 FIG00732228: membrane protein - none -
fig|6666666.229934.peg.1032 CDS CP012958.1 1072062 1071925 -3 - 138 FIG00732228: membrane protein - none -
fig|6666666.229934.peg.1033 CDS CP012958.1 1072348 1072079 -1 - 270 Putative sugar phosphotransferase component II B - none -
fig|6666666.229934.peg.1034 CDS CP012958.1 1073848 1072850 -1 - 999 FIG00781545: hypothetical protein - none -
fig|6666666.229934.peg.1035 CDS CP012958.1 1076052 1074109 -3 - 1944 ABC transporter ATP-binding protein - none -
fig|6666666.229934.peg.1036 CDS CP012958.1 1077446 1076094 -2 - 1353 Putative dNTP triphosphohydrolase, associated with nucleotidase YfbR Purine conversions;
dNTP triphosphohydrolase protein family
fig|6666666.229934.peg.1037 CDS CP012958.1 1078140 1077448 -3 - 693 LrgA-associated membrane protein LrgB Murein hydrolase regulation and cell death
fig|6666666.229934.peg.1038 CDS CP012958.1 1078499 1078140 -2 - 360 Antiholin-like protein LrgA Murein hydrolase regulation and cell death
fig|6666666.229934.peg.1039 CDS CP012958.1 1078969 1079469 1 + 501 Micrococcal nuclease (thermonuclease) homologs - none -
fig|6666666.229934.peg.1040 CDS CP012958.1 1079475 1080671 3 + 1197 Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA Alanine biosynthesis;
mnm5U34 biosynthesis bacteria;
tRNA modification Archaea
fig|6666666.229934.peg.1041 CDS CP012958.1 1080668 1081048 2 + 381 Cysteine desulfurase CsdA-CsdE, sulfur acceptor protein CsdE - none -
fig|6666666.229934.peg.1042 CDS CP012958.1 1082522 1081092 -2 - 1431 ADP-heptose synthase (EC 2.7.-.-) / D-glycero-beta-D-manno-heptose 7-phosphate kinase LOS core oligosaccharide biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.229934.peg.1043 CDS CP012958.1 1082636 1083571 2 + 936 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) KDO2-Lipid A biosynthesis
fig|6666666.229934.peg.1044 CDS CP012958.1 1084192 1083629 -1 - 564 Putative oxidoreductase component of anaerobic dehydrogenases; Functional role page for Chaperone protein TorD - none -
fig|6666666.229934.peg.1045 CDS CP012958.1 1084803 1084192 -3 - 612 NAD(P)H oxidoreductase YRKL (EC 1.6.99.-) @ Putative NADPH-quinone reductase (modulator of drug activity B) @ Flavodoxin 2 Flavodoxin;
Flavodoxin
fig|6666666.229934.peg.1046 CDS CP012958.1 1085258 1084812 -2 - 447 Putative activity regulator of membrane protease YbbK - none -
fig|6666666.229934.peg.1047 CDS CP012958.1 1086208 1085282 -1 - 927 Putative stomatin/prohibitin-family membrane protease subunit YbbK - none -
fig|6666666.229934.peg.1048 CDS CP012958.1 1087551 1086730 -3 - 822 probable glucanotransferase (endo alpha-1,4 polygalactosaminidase related protein) - none -
fig|6666666.229934.peg.1049 CDS CP012958.1 1089353 1090735 2 + 1383 Cytochrome c551 peroxidase (EC 1.11.1.5) Protection from Reactive Oxygen Species
fig|6666666.229934.peg.1050 CDS CP012958.1 1091980 1090823 -1 - 1158 Ribonuclease D (EC 3.1.26.3) tRNA processing
fig|6666666.229934.peg.1051 CDS CP012958.1 1093739 1092063 -2 - 1677 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) Biotin biosynthesis;
Biotin synthesis cluster
fig|6666666.229934.peg.1052 CDS CP012958.1 1094339 1093782 -2 - 558 Starvation lipoprotein Slp paralog Carbon Starvation
fig|6666666.229934.peg.1053 CDS CP012958.1 1095093 1094371 -3 - 723 TsaB protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Ribosome biogenesis bacterial;
YgjD and YeaZ;
YjeE;
YrdC-YciO-Sua5 protein family
fig|6666666.229934.peg.1054 CDS CP012958.1 1097033 1095096 -2 - 1938 DinG family ATP-dependent helicase YoaA DNA repair, bacterial DinG and relatives
fig|6666666.229934.peg.1055 CDS CP012958.1 1097109 1097927 3 + 819 Aldose 1-epimerase - none -
fig|6666666.229934.peg.1056 CDS CP012958.1 1098337 1099194 1 + 858 FIG000875: Thioredoxin domain-containing protein EC-YbbN - none -
fig|6666666.229934.peg.1057 CDS CP012958.1 1099254 1100207 3 + 954 Thioredoxin reductase (EC 1.8.1.9) Thioredoxin-disulfide reductase;
pyrimidine conversions
fig|6666666.229934.peg.1058 CDS CP012958.1 1100313 1102076 3 + 1764 Transport ATP-binding protein CydD Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229934.peg.1059 CDS CP012958.1 1102076 1103809 2 + 1734 Transport ATP-binding protein CydC Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229934.peg.1060 CDS CP012958.1 1104073 1104939 1 + 867 Acyl-CoA thioesterase II (EC 3.1.2.-) Acyl-CoA thioesterase II
fig|6666666.229934.peg.1061 CDS CP012958.1 1105231 1105103 -1 - 129 hypothetical protein - none -
fig|6666666.229934.peg.1062 CDS CP012958.1 1106013 1105228 -3 - 786 serine/threonine protein kinase - none -
fig|6666666.229934.peg.1063 CDS CP012958.1 1106594 1106034 -2 - 561 unknown - none -
fig|6666666.229934.peg.1064 CDS CP012958.1 1106757 1107341 3 + 585 Putative lipoprotein yceB precursor - none -
fig|6666666.229934.peg.1065 CDS CP012958.1 1108312 1107398 -1 - 915 ROK family Glucokinase with ambiguous substrate specificity - none -
fig|6666666.229934.peg.1066 CDS CP012958.1 1109031 1108363 -3 - 669 Phosphatidylglycerophosphatase B (EC 3.1.3.27) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Osmotic stress cluster
fig|6666666.229934.peg.1067 CDS CP012958.1 1109180 1109833 2 + 654 GTP cyclohydrolase II (EC 3.5.4.25) Molybdenum cofactor biosynthesis;
Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster
fig|6666666.229934.peg.1068 CDS CP012958.1 1110112 1110852 1 + 741 FIG00698611: hypothetical protein - none -
fig|6666666.229934.peg.1069 CDS CP012958.1 1111616 1111014 -2 - 603 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229934.peg.1070 CDS CP012958.1 1112020 1111478 -1 - 543 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229934.peg.1071 CDS CP012958.1 1112839 1112045 -1 - 795 DNA for glycosyltransferase, lytic transglycosylase, dTDP-4-rhamnose reductase Rhamnose containing glycans
fig|6666666.229934.peg.1072 CDS CP012958.1 1113642 1112839 -3 - 804 Exodeoxyribonuclease III (EC 3.1.11.2) DNA repair, bacterial
fig|6666666.229934.peg.1073 CDS CP012958.1 1113911 1113786 -2 - 126 hypothetical protein - none -
fig|6666666.229934.peg.1074 CDS CP012958.1 1115601 1114183 -3 - 1419 Undecaprenyl-phosphate galactosephosphotransferase (EC 2.7.8.6) - none -
fig|6666666.229934.peg.1075 CDS CP012958.1 1116520 1115564 -1 - 957 O antigen biosynthesis rhamnosyltransferase rfbN (EC 2.4.1.-) - none -
fig|6666666.229934.peg.1076 CDS CP012958.1 1117399 1116530 -1 - 870 Alpha-L-Rha alpha-1,3-L-rhamnosyltransferase (EC 2.4.1.-) Rhamnose containing glycans
fig|6666666.229934.peg.1077 CDS CP012958.1 1118476 1117772 -1 - 705 Glycosyltransferase involved in cell wall biogenesis (EC 2.4.-.-) - none -
fig|6666666.229934.peg.1078 CDS CP012958.1 1120196 1118856 -2 - 1341 membrane protein, related to Actinobacillus protein (1944168) - none -
fig|6666666.229934.peg.1079 CDS CP012958.1 1120875 1120183 -3 - 693 NDP-hexose 4-ketoreductase UrdR - none -
fig|6666666.229934.peg.1080 CDS CP012958.1 1122103 1120847 -1 - 1257 DNA for glycosyltransferase, lytic transglycosylase, dTDP-4-rhamnose reductase Rhamnose containing glycans
fig|6666666.229934.peg.1081 CDS CP012958.1 1123074 1122103 -3 - 972 O antigen biosynthesis rhamnosyltransferase rfbN (EC 2.4.1.-) - none -
fig|6666666.229934.peg.1082 CDS CP012958.1 1123697 1123071 -2 - 627 Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40) Rhamnose containing glycans
fig|6666666.229934.peg.1083 CDS CP012958.1 1124602 1123811 -1 - 792 O-antigen export system permease protein RfbD - none -
fig|6666666.229934.peg.1084 CDS CP012958.1 1125175 1124636 -1 - 540 dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) Capsular heptose biosynthesis;
Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229934.peg.1085 CDS CP012958.1 1126056 1125178 -3 - 879 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229934.peg.1086 CDS CP012958.1 1126833 1126057 -3 - 777 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229934.peg.1087 CDS CP012958.1 1128074 1127007 -2 - 1068 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229934.peg.1088 CDS CP012958.1 1129274 1128144 -2 - 1131 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) Murein Hydrolases;
Peptidoglycan Biosynthesis
fig|6666666.229934.peg.1089 CDS CP012958.1 1130085 1129276 -3 - 810 Glucosyl-3-phosphoglycerate synthase (EC 2.4.1.266) - none -
fig|6666666.229934.peg.1090 CDS CP012958.1 1131035 1130154 -2 - 882 Glycosyltransferase - none -
fig|6666666.229934.peg.1091 CDS CP012958.1 1132228 1131035 -1 - 1194 DNA for glycosyltransferase, lytic transglycosylase, dTDP-4-rhamnose reductase Rhamnose containing glycans
fig|6666666.229934.peg.1092 CDS CP012958.1 1133013 1132237 -3 - 777 Lipopolysaccharide core biosynthesis glycosyltransferase WadA - none -
fig|6666666.229934.peg.1093 CDS CP012958.1 1133144 1134667 2 + 1524 putative flippase - none -
fig|6666666.229934.peg.1094 CDS CP012958.1 1134664 1135620 1 + 957 Polysaccharide polymerization protein - none -
fig|6666666.229934.peg.1095 CDS CP012958.1 1135729 1135980 1 + 252 YefM protein (antitoxin to YoeB) Toxin-antitoxin replicon stabilization systems
fig|6666666.229934.peg.1096 CDS CP012958.1 1135977 1136231 3 + 255 YoeB toxin protein Toxin-antitoxin replicon stabilization systems
fig|6666666.229934.peg.1097 CDS CP012958.1 1136244 1136987 3 + 744 Probable transmembrane protein - none -
fig|6666666.229934.peg.1098 CDS CP012958.1 1136960 1137121 2 + 162 hypothetical protein - none -
fig|6666666.229934.peg.1099 CDS CP012958.1 1137164 1137991 2 + 828 DNA ligase (ATP) (EC 6.5.1.1) DNA ligases
fig|6666666.229934.peg.1100 CDS CP012958.1 1140298 1138124 -1 - 2175 ATP-dependent DNA helicase UvrD/PcrA DNA repair, bacterial UvrD and related helicases
fig|6666666.229934.peg.1101 CDS CP012958.1 1141821 1140472 -3 - 1350 Low-affinity gluconate/H+ symporter GntU D-gluconate and ketogluconates metabolism
fig|6666666.229934.peg.1102 CDS CP012958.1 1142039 1142557 2 + 519 Gluconokinase (EC 2.7.1.12) D-gluconate and ketogluconates metabolism;
Entner-Doudoroff Pathway
fig|6666666.229934.peg.1103 CDS CP012958.1 1142676 1142554 -3 - 123 hypothetical protein - none -
fig|6666666.229934.peg.1104 CDS CP012958.1 1143625 1142627 -1 - 999 Gluconate utilization system Gnt-I transcriptional repressor D-gluconate and ketogluconates metabolism
fig|6666666.229934.peg.1105 CDS CP012958.1 1144498 1143674 -1 - 825 Formate dehydrogenase chain D (EC 1.2.1.2) Formate hydrogenase
fig|6666666.229934.peg.1106 CDS CP012958.1 1144719 1147829 3 + 3111 Formate dehydrogenase N alpha subunit (EC 1.2.1.2) @ selenocysteine-containing Formate dehydrogenase;
Formate hydrogenase
fig|6666666.229934.peg.1107 CDS CP012958.1 1147927 1148757 1 + 831 Formate dehydrogenase O beta subunit (EC 1.2.1.2) Formate dehydrogenase;
Formate hydrogenase
fig|6666666.229934.peg.1108 CDS CP012958.1 1148750 1149463 2 + 714 Formate dehydrogenase -O, gamma subunit (EC 1.2.1.2) Anaerobic respiratory reductases;
Formate hydrogenase
fig|6666666.229934.peg.1109 CDS CP012958.1 1152315 1150030 -3 - 2286 [NiFe] hydrogenase metallocenter assembly protein HypF G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229934.peg.1110 CDS CP012958.1 1152611 1153210 2 + 600 Hydrogenase-4 component A - none -
fig|6666666.229934.peg.1111 CDS CP012958.1 1153243 1155264 1 + 2022 Hydrogenase-4 component B (EC 1.-.-.-) / Formate hydrogenlyase subunit 3 Formate hydrogenase;
Formate hydrogenase
fig|6666666.229934.peg.1112 CDS CP012958.1 1155275 1156237 2 + 963 Hydrogenase-4 component C - none -
fig|6666666.229934.peg.1113 CDS CP012958.1 1156250 1157695 2 + 1446 Hydrogenase-4 component D - none -
fig|6666666.229934.peg.1114 CDS CP012958.1 1157706 1158344 3 + 639 Hydrogenase-4 component E (EC 1.-.-.-) Formate hydrogenase
fig|6666666.229934.peg.1115 CDS CP012958.1 1158349 1159887 1 + 1539 Hydrogenase-4 component F - none -
fig|6666666.229934.peg.1116 CDS CP012958.1 1159906 1161636 1 + 1731 Formate hydrogenlyase subunit 5 Formate hydrogenase
fig|6666666.229934.peg.1117 CDS CP012958.1 1161650 1162246 2 + 597 Formate hydrogenlyase complex 3 iron-sulfur protein; Formate hydrogenlyase subunit 6; Ni,Fe-hydrogenase III medium subunit Formate hydrogenase
fig|6666666.229934.peg.1118 CDS CP012958.1 1162294 1163070 1 + 777 Formate hydrogenlyase subunit 7 Formate hydrogenase
fig|6666666.229934.peg.1119 CDS CP012958.1 1163205 1163609 3 + 405 Formate hydrogenlyase transcriptional activator Formate hydrogenase
fig|6666666.229934.peg.1120 CDS CP012958.1 1163599 1164060 1 + 462 Hydrogenase 3 maturation protease (EC 3.4.-.-) - none -
fig|6666666.229934.peg.1121 CDS CP012958.1 1164590 1166812 2 + 2223 Formate dehydrogenase H (EC 1.2.1.2) @ selenocysteine-containing Formate dehydrogenase
fig|6666666.229934.peg.1124 CDS CP012958.1 1167855 1166983 -3 - 873 Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) Serine-glyoxylate cycle;
TCA Cycle
fig|6666666.229934.peg.1125 CDS CP012958.1 1169035 1167866 -1 - 1170 Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) Serine-glyoxylate cycle;
TCA Cycle
fig|6666666.229934.peg.1126 CDS CP012958.1 1169232 1169092 -3 - 141 hypothetical protein - none -
fig|6666666.229934.peg.1127 CDS CP012958.1 1170445 1169222 -1 - 1224 Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61) Dehydrogenase complexes;
TCA Cycle
fig|6666666.229934.peg.1128 CDS CP012958.1 1173378 1170571 -3 - 2808 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) Dehydrogenase complexes;
TCA Cycle
fig|6666666.229934.peg.1129 CDS CP012958.1 1173463 1173585 1 + 123 hypothetical protein - none -
fig|6666666.229934.peg.1130 CDS CP012958.1 1174292 1173654 -2 - 639 Hypothetical metal-binding enzyme, YcbL homolog CBSS-228400.4.peg.1623
fig|6666666.229934.peg.1131 CDS CP012958.1 1174930 1174370 -1 - 561 FIG001587: exported protein CBSS-228400.4.peg.1623
fig|6666666.229934.peg.1132 CDS CP012958.1 1176503 1174995 -2 - 1509 L,D-transpeptidase YcbB CBSS-228400.4.peg.1623
fig|6666666.229934.peg.1133 CDS CP012958.1 1178638 1176581 -1 - 2058 Tail-specific protease precursor (EC 3.4.21.102) - none -
fig|6666666.229934.peg.1134 CDS CP012958.1 1179320 1178712 -2 - 609 ProQ: influences osmotic activation of compatible solute ProP - none -
fig|6666666.229934.peg.1135 CDS CP012958.1 1179538 1180821 1 + 1284 Paraquat-inducible protein A Oxidative stress
fig|6666666.229934.peg.1136 CDS CP012958.1 1180784 1183441 2 + 2658 Paraquat-inducible protein B Oxidative stress
fig|6666666.229934.peg.1137 CDS CP012958.1 1184761 1183517 -1 - 1245 Tripeptide aminopeptidase (EC 3.4.11.4) - none -
fig|6666666.229934.peg.1138 CDS CP012958.1 1185025 1186143 1 + 1119 Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) Polyamine Metabolism
fig|6666666.229934.peg.1139 CDS CP012958.1 1186127 1186987 2 + 861 Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) Polyamine Metabolism
fig|6666666.229934.peg.1140 CDS CP012958.1 1186987 1187760 1 + 774 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) Polyamine Metabolism
fig|6666666.229934.peg.1141 CDS CP012958.1 1187891 1188988 2 + 1098 ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1) Polyamine Metabolism
fig|6666666.229934.peg.1142 CDS CP012958.1 1189110 1190006 3 + 897 Cytidine deaminase (EC 3.5.4.5) Murein hydrolase regulation and cell death;
pyrimidine conversions;
tRNA modification Bacteria
fig|6666666.229934.peg.1143 CDS CP012958.1 1190104 1189991 -1 - 114 hypothetical protein - none -
fig|6666666.229934.peg.1144 CDS CP012958.1 1191401 1190085 -2 - 1317 Seryl-tRNA synthetase (EC 6.1.1.11) CBSS-326442.4.peg.1852;
Glycine and Serine Utilization;
tRNA aminoacylation, Ser
fig|6666666.229934.peg.1145 CDS CP012958.1 1191709 1193376 1 + 1668 C4-dicarboxylate transporter DcuB - none -
fig|6666666.229934.peg.1146 CDS CP012958.1 1195213 1193873 -1 - 1341 FIG065221: Holliday junction DNA helicase CBSS-83333.1.peg.876
fig|6666666.229934.peg.1147 CDS CP012958.1 1195843 1195226 -1 - 618 Outer membrane lipoprotein carrier protein LolA CBSS-83333.1.peg.876;
Lipopolysaccharide assembly;
Lipoprotein sorting system
fig|6666666.229934.peg.1148 CDS CP012958.1 1198680 1195936 -3 - 2745 Cell division protein FtsK Bacterial Cell Division;
Bacterial Cytoskeleton;
Bacterial RNA-metabolizing Zn-dependent hydrolases;
CBSS-83333.1.peg.876
fig|6666666.229934.peg.1149 CDS CP012958.1 1199163 1198684 -3 - 480 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229934.peg.1150 CDS CP012958.1 1201075 1199702 -1 - 1374 DNA repair protein RadA DNA repair, bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229934.peg.1151 CDS CP012958.1 1202232 1201078 -3 - 1155 Adenylate cyclase (EC 4.6.1.1) cAMP signaling in bacteria
fig|6666666.229934.peg.1152 CDS CP012958.1 1202397 1203077 3 + 681 Phosphate transport regulator (distant homolog of PhoU) Phosphate metabolism
fig|6666666.229934.peg.1153 CDS CP012958.1 1203103 1204368 1 + 1266 Probable low-affinity inorganic phosphate transporter Phosphate metabolism
fig|6666666.229934.peg.1154 CDS CP012958.1 1204437 1205048 3 + 612 SH3 domain protein - none -
fig|6666666.229934.peg.1155 CDS CP012958.1 1205048 1206352 2 + 1305 tRNA nucleotidyltransferase (EC 2.7.7.21) (EC 2.7.7.25) Polyadenylation bacterial;
tRNA nucleotidyltransferase
fig|6666666.229934.peg.1156 CDS CP012958.1 1206387 1207010 3 + 624 Outer membrane lipoprotein LolB precursor - none -
fig|6666666.229934.peg.1157 CDS CP012958.1 1207010 1207921 2 + 912 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148) A Gammaproteobacteria Cluster Relating to Translation;
Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.229934.peg.1158 CDS CP012958.1 1207962 1208912 3 + 951 Ribose-phosphate pyrophosphokinase (EC 2.7.6.1) A Gammaproteobacteria Cluster Relating to Translation;
Pentose phosphate pathway;
Transcription repair cluster
fig|6666666.229934.peg.1159 CDS CP012958.1 1209089 1209235 2 + 147 hypothetical protein - none -
fig|6666666.229934.peg.1160 CDS CP012958.1 1209544 1210689 1 + 1146 L-lactate dehydrogenase (EC 1.1.2.3) Lactate utilization;
Respiratory dehydrogenases 1
fig|6666666.229934.peg.1161 CDS CP012958.1 1210932 1212521 3 + 1590 L-lactate permease Lactate utilization
fig|6666666.229934.peg.1162 CDS CP012958.1 1213008 1212676 -3 - 333 UPF0265 protein YeeX Broadly distributed proteins not in subsystems
fig|6666666.229934.peg.1163 CDS CP012958.1 1213033 1213149 1 + 117 hypothetical protein - none -
fig|6666666.229934.peg.1164 CDS CP012958.1 1213208 1214290 2 + 1083 Phosphoserine aminotransferase (EC 2.6.1.52) Glycine and Serine Utilization;
Pyridoxin (Vitamin B6) Biosynthesis;
Serine Biosynthesis
fig|6666666.229934.peg.1165 CDS CP012958.1 1214317 1215636 1 + 1320 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) @ Histidinol-phosphate aminotransferase (EC 2.6.1.9) Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229934.peg.1166 CDS CP012958.1 1215637 1215831 1 + 195 hypothetical protein - none -
fig|6666666.229934.peg.1167 CDS CP012958.1 1216813 1215917 -1 - 897 Cobalt-zinc-cadmium resistance protein CzcD Cobalt-zinc-cadmium resistance
fig|6666666.229934.peg.1168 CDS CP012958.1 1217652 1217885 3 + 234 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) @ Histidinol-phosphate aminotransferase (EC 2.6.1.9) Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229934.peg.1169 CDS CP012958.1 1217896 1219227 1 + 1332 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229934.peg.1170 CDS CP012958.1 1219782 1219315 -3 - 468 Ribonuclease HI (EC 3.1.26.4) CBSS-228410.1.peg.134;
CBSS-342610.3.peg.1536;
Ribonuclease H
fig|6666666.229934.peg.1171 CDS CP012958.1 1219850 1220611 2 + 762 DNA polymerase III epsilon subunit (EC 2.7.7.7) CBSS-228410.1.peg.134;
CBSS-342610.3.peg.1536
fig|6666666.229934.peg.1172 CDS CP012958.1 1221063 1221317 3 + 255 RelB/StbD replicon stabilization protein (antitoxin to RelE/StbE) Toxin-antitoxin replicon stabilization systems
fig|6666666.229934.peg.1173 CDS CP012958.1 1221307 1221597 1 + 291 RelE/StbE replicon stabilization toxin Toxin-antitoxin replicon stabilization systems
fig|6666666.229934.peg.1174 CDS CP012958.1 1221995 1221654 -2 - 342 conserved hypothetical protein - none -
fig|6666666.229934.peg.1175 CDS CP012958.1 1222423 1222788 1 + 366 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) Ammonia assimilation;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229934.peg.1176 CDS CP012958.1 1222959 1224347 3 + 1389 Putative protease - none -
fig|6666666.229934.peg.1177 CDS CP012958.1 1224644 1225735 2 + 1092 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) CBSS-211586.1.peg.2832;
Queuosine-Archaeosine Biosynthesis;
Scaffold proteins for [4Fe-4S] cluster assembly (MRP family);
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229934.peg.1178 CDS CP012958.1 1226915 1225779 -2 - 1137 Periplasmic aromatic amino acid aminotransferase beta precursor (EC 2.6.1.57) Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229934.peg.1179 CDS CP012958.1 1227388 1228539 1 + 1152 tRNA-guanine transglycosylase (EC 2.4.2.29) CBSS-211586.1.peg.2832;
Queuosine-Archaeosine Biosynthesis;
Scaffold proteins for [4Fe-4S] cluster assembly (MRP family);
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229934.peg.1180 CDS CP012958.1 1228674 1228814 3 + 141 hypothetical protein - none -
fig|6666666.229934.peg.1181 CDS CP012958.1 1228831 1229130 1 + 300 Preprotein translocase subunit YajC (TC 3.A.5.1.1) CBSS-211586.1.peg.2832
fig|6666666.229934.peg.1182 CDS CP012958.1 1229194 1231011 1 + 1818 Protein-export membrane protein SecD (TC 3.A.5.1.1) CBSS-211586.1.peg.2832
fig|6666666.229934.peg.1183 CDS CP012958.1 1231028 1231993 2 + 966 Protein-export membrane protein SecF (TC 3.A.5.1.1) CBSS-211586.1.peg.2832
fig|6666666.229934.peg.1184 CDS CP012958.1 1232213 1234840 2 + 2628 Iron siderophore receptor protein - none -
fig|6666666.229934.peg.1185 CDS CP012958.1 1235087 1234911 -2 - 177 hypothetical protein - none -
fig|6666666.229934.peg.1186 CDS CP012958.1 1235190 1237811 3 + 2622 Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) 5-FCL-like protein;
Butanol Biosynthesis;
Butanol Biosynthesis;
Fermentations: Lactate;
Fermentations: Mixed acid;
Fermentations: Mixed acid;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229934.peg.1187 CDS CP012958.1 1238847 1237894 -3 - 954 Inositol transport system permease protein Inositol catabolism
fig|6666666.229934.peg.1188 CDS CP012958.1 1240403 1238898 -2 - 1506 Inositol transport system ATP-binding protein Inositol catabolism
fig|6666666.229934.peg.1189 CDS CP012958.1 1241404 1240472 -1 - 933 Inositol transport system sugar-binding protein Inositol catabolism
fig|6666666.229934.peg.1190 CDS CP012958.1 1242426 1241488 -3 - 939 Inositol transport system sugar-binding protein Inositol catabolism
fig|6666666.229934.peg.1191 CDS CP012958.1 1243866 1242727 -3 - 1140 Myo-inositol 2-dehydrogenase 2 (EC 1.1.1.18) Inositol catabolism
fig|6666666.229934.peg.1192 CDS CP012958.1 1245465 1243957 -3 - 1509 Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27) Inositol catabolism
fig|6666666.229934.peg.1193 CDS CP012958.1 1247046 1245703 -3 - 1344 putative hexose phosphate transport protein - none -
fig|6666666.229934.peg.1194 CDS CP012958.1 1247867 1247064 -2 - 804 Inositol-1-monophosphatase (EC 3.1.3.25) - none -
fig|6666666.229934.peg.1195 CDS CP012958.1 1248131 1248961 2 + 831 5-deoxy-glucuronate isomerase (EC 5.3.1.-) Inositol catabolism
fig|6666666.229934.peg.1196 CDS CP012958.1 1249047 1248916 -3 - 132 hypothetical protein - none -
fig|6666666.229934.peg.1197 CDS CP012958.1 1249090 1249929 1 + 840 Predicted transcriptional regulator of the myo-inositol catabolic operon Inositol catabolism
fig|6666666.229934.peg.1198 CDS CP012958.1 1251876 1249969 -3 - 1908 5-keto-2-deoxygluconokinase (EC 2.7.1.92) / uncharacterized domain Inositol catabolism;
Inositol catabolism
fig|6666666.229934.peg.1199 CDS CP012958.1 1252124 1251996 -2 - 129 hypothetical protein - none -
fig|6666666.229934.peg.1200 CDS CP012958.1 1252188 1254134 3 + 1947 Epi-inositol hydrolase (EC 3.7.1.-) Inositol catabolism
fig|6666666.229934.peg.1201 CDS CP012958.1 1254190 1255086 1 + 897 Inosose dehydratase (EC 4.2.1.44) Inositol catabolism
fig|6666666.229934.peg.1202 CDS CP012958.1 1255089 1256099 3 + 1011 Myo-inositol 2-dehydrogenase 1 (EC 1.1.1.18) Inositol catabolism
fig|6666666.229934.peg.1203 CDS CP012958.1 1256716 1256204 -1 - 513 Mannitol operon repressor Mannitol Utilization
fig|6666666.229934.peg.1204 CDS CP012958.1 1257939 1256791 -3 - 1149 Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17) Mannitol Utilization
fig|6666666.229934.peg.1205 CDS CP012958.1 1259897 1258017 -2 - 1881 PTS system, mannitol-specific IIC component (EC 2.7.1.69) / PTS system, mannitol-specific IIB component (EC 2.7.1.69) / PTS system, mannitol-specific IIA component (EC 2.7.1.69) Mannitol Utilization;
Mannitol Utilization;
Mannitol Utilization
fig|6666666.229934.peg.1206 CDS CP012958.1 1261740 1260307 -3 - 1434 RTX toxin transporter, determinant D # Leukotoxin secretion protein D - none -
fig|6666666.229934.peg.1207 CDS CP012958.1 1263878 1261755 -2 - 2124 Methionine ABC transporter ATP-binding protein Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229934.peg.1208 CDS CP012958.1 1267114 1263947 -1 - 3168 bifunctional hemolysin-adenylate cyclase precursor cAMP signaling in bacteria
fig|6666666.229934.peg.1209 CDS CP012958.1 1267633 1267127 -1 - 507 RTX toxin activating lysine-acyltransferase (EC 2.3.1.-) - none -
fig|6666666.229934.peg.1210 CDS CP012958.1 1270000 1268738 -1 - 1263 Serine hydroxymethyltransferase (EC 2.1.2.1) 5-FCL-like protein;
Glycine Biosynthesis;
Glycine and Serine Utilization;
Serine-glyoxylate cycle;
Serine Biosynthesis;
YrdC-YciO-Sua5 protein family
fig|6666666.229934.peg.1211 CDS CP012958.1 1270677 1270135 -3 - 543 hypothetical protein - none -
fig|6666666.229934.peg.1212 CDS CP012958.1 1271206 1271057 -1 - 150 hypothetical protein - none -
fig|6666666.229934.peg.1213 CDS CP012958.1 1272297 1271293 -3 - 1005 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) RNA methylation
fig|6666666.229934.peg.1214 CDS CP012958.1 1272353 1272802 2 + 450 DNA polymerase III psi subunit (EC 2.7.7.7) - none -
fig|6666666.229934.peg.1215 CDS CP012958.1 1272812 1273255 2 + 444 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Ribosome biogenesis bacterial;
YrdC-YciO-Sua5 protein family
fig|6666666.229934.peg.1216 CDS CP012958.1 1276673 1273257 -2 - 3417 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) DNA repair, bacterial RecBCD pathway
fig|6666666.229934.peg.1217 CDS CP012958.1 1276987 1276685 -1 - 303 FIG00696353: hypothetical protein - none -
fig|6666666.229934.peg.1218 CDS CP012958.1 1277081 1276962 -2 - 120 FIG00696574: hypothetical protein - none -
fig|6666666.229934.peg.1219 CDS CP012958.1 1277461 1277159 -1 - 303 Type II secretory pathway, pseudopilin PulG - none -
fig|6666666.229934.peg.1220 CDS CP012958.1 1278538 1278071 -1 - 468 18K peptidoglycan-associated outer membrane lipoprotein; Peptidoglycan-associated lipoprotein precursor; Outer membrane protein P6; OmpA/MotB precursor Ton and Tol transport systems
fig|6666666.229934.peg.1221 CDS CP012958.1 1279833 1278553 -3 - 1281 tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins Ton and Tol transport systems
fig|6666666.229934.peg.1222 CDS CP012958.1 1281076 1279868 -1 - 1209 TolA protein Ton and Tol transport systems
fig|6666666.229934.peg.1223 CDS CP012958.1 1281515 1281093 -2 - 423 Tol biopolymer transport system, TolR protein Ton and Tol transport systems
fig|6666666.229934.peg.1224 CDS CP012958.1 1282290 1281601 -3 - 690 MotA/TolQ/ExbB proton channel family protein Ton and Tol transport systems
fig|6666666.229934.peg.1225 CDS CP012958.1 1282724 1282320 -2 - 405 4-hydroxybenzoyl-CoA thioesterase family active site Ton and Tol transport systems
fig|6666666.229934.peg.1226 CDS CP012958.1 1282789 1282908 1 + 120 hypothetical protein - none -
fig|6666666.229934.peg.1227 CDS CP012958.1 1284369 1283233 -3 - 1137 Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229934.peg.1228 CDS CP012958.1 1285853 1284384 -2 - 1470 Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229934.peg.1229 CDS CP012958.1 1286401 1286712 1 + 312 Chromosome segregation ATPases - none -
fig|6666666.229934.peg.1230 CDS CP012958.1 1287785 1286766 -2 - 1020 Holliday junction DNA helicase RuvB RuvABC plus a hypothetical
fig|6666666.229934.peg.1231 CDS CP012958.1 1288408 1287794 -1 - 615 Holliday junction DNA helicase RuvA RuvABC plus a hypothetical
fig|6666666.229934.peg.1232 CDS CP012958.1 1289044 1288472 -1 - 573 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) RuvABC plus a hypothetical
fig|6666666.229934.peg.1233 CDS CP012958.1 1289510 1289100 -2 - 411 excinuclease ABC subunit A - none -
fig|6666666.229934.peg.1234 CDS CP012958.1 1290262 1289522 -1 - 741 FIG000859: hypothetical protein YebC Riboflavin, FMN and FAD metabolism in plants;
RuvABC plus a hypothetical
fig|6666666.229934.peg.1235 CDS CP012958.1 1290667 1290296 -1 - 372 Dihydroneopterin triphosphate pyrophosphohydrolase type 2 (nudB) Folate Biosynthesis
fig|6666666.229934.peg.1236 CDS CP012958.1 1292116 1290848 -1 - 1269 Mn2+ and Fe2+ transporters of the NRAMP family - none -
fig|6666666.229934.peg.1237 CDS CP012958.1 1292334 1292474 3 + 141 hypothetical protein - none -
fig|6666666.229934.peg.1238 CDS CP012958.1 1294286 1292508 -2 - 1779 Aspartyl-tRNA synthetase (EC 6.1.1.12) tRNA aminoacylation, Asp and Asn
fig|6666666.229934.peg.1239 CDS CP012958.1 1294494 1295021 3 + 528 membrane protein, putative - none -
fig|6666666.229934.peg.1240 CDS CP012958.1 1295093 1295818 2 + 726 tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229934.peg.1241 CDS CP012958.1 1298465 1295898 -2 - 2568 FIG00362583: hypothetical protein - none -
fig|6666666.229934.peg.1242 CDS CP012958.1 1299939 1298608 -3 - 1332 Glycerol-3-phosphate transporter - none -
fig|6666666.229934.peg.1243 CDS CP012958.1 1300340 1302292 2 + 1953 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229934.peg.1244 CDS CP012958.1 1302451 1302858 1 + 408 Lactoylglutathione lyase (EC 4.4.1.5) Glutathione: Non-redox reactions;
Methylglyoxal Metabolism
fig|6666666.229934.peg.1245 CDS CP012958.1 1302945 1303598 3 + 654 Ribonuclease T (EC 3.1.13.-) tRNA processing
fig|6666666.229934.peg.1246 CDS CP012958.1 1303950 1305302 3 + 1353 Histidine permease YuiF - none -
fig|6666666.229934.peg.1247 CDS CP012958.1 1305366 1305932 3 + 567 Primosomal replication protein N@1@1 - none -
fig|6666666.229934.peg.1248 CDS CP012958.1 1307413 1305989 -1 - 1425 tRNA-i(6)A37 methylthiotransferase Methylthiotransferases;
tRNA-methylthiotransferase containing cluster;
tRNA modification Archaea;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229934.peg.1249 CDS CP012958.1 1307521 1307649 1 + 129 hypothetical protein - none -
fig|6666666.229934.peg.1250 CDS CP012958.1 1307757 1307900 3 + 144 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-) CBSS-87626.3.peg.3639;
Ubiquinone Biosynthesis
fig|6666666.229934.peg.1251 CDS CP012958.1 1309345 1308614 -1 - 732 FIG053235: Diacylglucosamine hydrolase like Llipid A biosynthesis cluster
fig|6666666.229934.peg.1252 CDS CP012958.1 1310336 1309347 -2 - 990 Octaprenyl diphosphate synthase (EC 2.5.1.90) Isoprenoinds for Quinones;
Polyprenyl Diphosphate Biosynthesis
fig|6666666.229934.peg.1253 CDS CP012958.1 1310584 1310895 1 + 312 LSU ribosomal protein L21p CBSS-176279.3.peg.868;
Ribosome LSU bacterial
fig|6666666.229934.peg.1254 CDS CP012958.1 1310916 1311173 3 + 258 LSU ribosomal protein L27p CBSS-176279.3.peg.868;
Ribosome LSU bacterial
fig|6666666.229934.peg.1255 CDS CP012958.1 1311245 1312177 2 + 933 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229934.peg.1256 CDS CP012958.1 1312255 1313172 1 + 918 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229934.peg.1257 CDS CP012958.1 1313209 1314390 1 + 1182 GTP-binding protein Obg CBSS-176279.3.peg.868;
Universal GTPases
fig|6666666.229934.peg.1258 CDS CP012958.1 1314506 1314387 -2 - 120 tmRNA-binding protein SmpB Heat shock dnaK gene cluster extended;
Translation termination factors bacterial
fig|6666666.229934.peg.1259 CDS CP012958.1 1314940 1314458 -1 - 483 tmRNA-binding protein SmpB Heat shock dnaK gene cluster extended;
Translation termination factors bacterial
fig|6666666.229934.peg.1260 CDS CP012958.1 1315285 1315148 -1 - 138 hypothetical protein - none -
fig|6666666.229934.peg.1261 CDS CP012958.1 1315308 1316933 3 + 1626 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229934.peg.1262 CDS CP012958.1 1317034 1317954 1 + 921 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229934.peg.1263 CDS CP012958.1 1317964 1318902 1 + 939 Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229934.peg.1264 CDS CP012958.1 1318912 1319895 1 + 984 Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229934.peg.1265 CDS CP012958.1 1319892 1320890 3 + 999 Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229934.peg.1266 CDS CP012958.1 1321590 1320997 -3 - 594 Aerobic respiration control protein arcA - none -
fig|6666666.229934.peg.1267 CDS CP012958.1 1322106 1321966 -3 - 141 LSU ribosomal protein L36p Ribosome LSU bacterial
fig|6666666.229934.peg.1268 CDS CP012958.1 1322382 1322116 -3 - 267 LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-independent Ribosome LSU bacterial;
Ribosome LSU bacterial
fig|6666666.229934.peg.1269 CDS CP012958.1 1323163 1322594 -1 - 570 Lysine decarboxylase family - none -
fig|6666666.229934.peg.1270 CDS CP012958.1 1323306 1325096 3 + 1791 Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8) Biogenesis of c-type cytochromes;
Periplasmic disulfide interchange
fig|6666666.229934.peg.1271 CDS CP012958.1 1325198 1325085 -2 - 114 hypothetical protein - none -
fig|6666666.229934.peg.1272 CDS CP012958.1 1325176 1325565 1 + 390 INTEGRAL MEMBRANE PROTEIN (Rhomboid family) - none -
fig|6666666.229934.peg.1273 CDS CP012958.1 1328854 1325963 -1 - 2892 Ribonuclease E (EC 3.1.26.12) RNA processing and degradation, bacterial;
Ribosome biogenesis bacterial
fig|6666666.229934.peg.1274 CDS CP012958.1 1329088 1329210 1 + 123 hypothetical protein - none -
fig|6666666.229934.peg.1275 CDS CP012958.1 1329320 1330279 2 + 960 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) RNA pseudouridine syntheses;
Ribosome biogenesis bacterial
fig|6666666.229934.peg.1276 CDS CP012958.1 1330693 1330478 -1 - 216 Thioredoxin - none -
fig|6666666.229934.peg.1277 CDS CP012958.1 1331896 1330901 -1 - 996 D-lactate dehydrogenase (EC 1.1.1.28) Fermentations: Lactate;
Fermentations: Mixed acid
fig|6666666.229934.peg.1278 CDS CP012958.1 1333050 1331920 -3 - 1131 Cystathionine gamma-synthase (EC 2.5.1.48) Methionine Biosynthesis
fig|6666666.229934.peg.1279 CDS CP012958.1 1334030 1334848 2 + 819 Peptidoglycan hydrolase VirB1, involved in T-DNA transfer - none -
fig|6666666.229934.peg.1280 CDS CP012958.1 1334845 1335735 1 + 891 Forms the bulk of type IV secretion complex that spans outer membrane and periplasm (VirB9) - none -
fig|6666666.229934.peg.1281 CDS CP012958.1 1335746 1336315 2 + 570 hypothetical protein - none -
fig|6666666.229934.peg.1282 CDS CP012958.1 1337060 1336401 -2 - 660 putative membrane protein - none -
fig|6666666.229934.peg.1283 CDS CP012958.1 1337257 1337141 -1 - 117 hypothetical protein - none -
fig|6666666.229934.peg.1284 CDS CP012958.1 1337272 1338078 1 + 807 Permeases of the drug/metabolite transporter (DMT) superfamily - none -
fig|6666666.229934.peg.1285 CDS CP012958.1 1339349 1338342 -2 - 1008 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) Cluster Ytf and putative sugar transporter;
Glycolysis and Gluconeogenesis;
Putative sugar ABC transporter (ytf cluster)
fig|6666666.229934.peg.1286 CDS CP012958.1 1339507 1340880 1 + 1374 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (EC 6.3.2.-) Peptidoglycan biosynthesis--gjo;
Recycling of Peptidoglycan Amino Acids
fig|6666666.229934.peg.1287 CDS CP012958.1 1341260 1342378 2 + 1119 Membrane-bound lytic murein transglycosylase A precursor (EC 3.2.1.-) Murein Hydrolases
fig|6666666.229934.peg.1288 CDS CP012958.1 1342378 1343148 1 + 771 HesA/MoeB/ThiF family protein related to EC-YgdL - none -
fig|6666666.229934.peg.1289 CDS CP012958.1 1343248 1344267 1 + 1020 Zinc ABC transporter, periplasmic-binding protein ZnuA - none -
fig|6666666.229934.peg.1290 CDS CP012958.1 1344395 1345207 2 + 813 Outer membrane lipoprotein e (P4) / NMN 5@1-nucleotidase, extracellular (EC 3.1.3.5) NAD and NADP cofactor biosynthesis global
fig|6666666.229934.peg.1291 CDS CP012958.1 1345778 1345287 -2 - 492 FIG001943: hypothetical protein YajQ Broadly distributed proteins not in subsystems
fig|6666666.229934.peg.1292 CDS CP012958.1 1346733 1345789 -3 - 945 Phosphoserine phosphatase (EC 3.1.3.3) Glycine and Serine Utilization;
Serine Biosynthesis;
Serine Biosynthesis
fig|6666666.229934.peg.1293 CDS CP012958.1 1346809 1347486 1 + 678 Lipoate-protein ligase A Lipoic acid metabolism
fig|6666666.229934.peg.1294 CDS CP012958.1 1347562 1347443 -1 - 120 hypothetical protein - none -
fig|6666666.229934.peg.1295 CDS CP012958.1 1347859 1347596 -1 - 264 SSU ribosomal protein S20p - none -
fig|6666666.229934.peg.1296 CDS CP012958.1 1348127 1349704 2 + 1578 Proposed peptidoglycan lipid II flippase MurJ Peptidoglycan lipid II flippase
fig|6666666.229934.peg.1297 CDS CP012958.1 1349782 1350708 1 + 927 Riboflavin kinase (EC 2.7.1.26) / FMN adenylyltransferase (EC 2.7.7.2) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin, FMN and FAD metabolism in plants;
riboflavin to FAD;
riboflavin to FAD
fig|6666666.229934.peg.1298 CDS CP012958.1 1350922 1351086 1 + 165 FIG01055344: hypothetical protein - none -
fig|6666666.229934.peg.1299 CDS CP012958.1 1351124 1353946 2 + 2823 Isoleucyl-tRNA synthetase (EC 6.1.1.5) tRNA aminoacylation, Ile
fig|6666666.229934.peg.1300 CDS CP012958.1 1354026 1354520 3 + 495 Lipoprotein signal peptidase (EC 3.4.23.36) Lipoprotein Biosynthesis;
Signal peptidase
fig|6666666.229934.peg.1301 CDS CP012958.1 1354520 1355464 2 + 945 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.229934.peg.1302 CDS CP012958.1 1357227 1355929 -3 - 1299 Cell division trigger factor (EC 5.2.1.8) Bacterial Cell Division
fig|6666666.229934.peg.1303 CDS CP012958.1 1358284 1357391 -1 - 894 Tyrosine recombinase XerD - none -
fig|6666666.229934.peg.1304 CDS CP012958.1 1359447 1358287 -3 - 1161 Probable 3-phenylpropionic acid transporter - none -
fig|6666666.229934.peg.1305 CDS CP012958.1 1359686 1359447 -2 - 240 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) A Hypothetical Protein Related to Proline Metabolism;
CBSS-630.2.peg.3360;
Proline Synthesis
fig|6666666.229934.peg.1306 CDS CP012958.1 1360150 1359692 -1 - 459 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) A Hypothetical Protein Related to Proline Metabolism;
CBSS-630.2.peg.3360;
Proline Synthesis
fig|6666666.229934.peg.1307 CDS CP012958.1 1360213 1361118 1 + 906 DNA recombination-dependent growth factor C DNA repair, bacterial
fig|6666666.229934.peg.1308 CDS CP012958.1 1361583 1361209 -3 - 375 opacity associated protein - none -
fig|6666666.229934.peg.1309 CDS CP012958.1 1362958 1361645 -1 - 1314 Cell envelope opacity-associated protein A - none -
fig|6666666.229934.peg.1310 CDS CP012958.1 1364161 1363130 -1 - 1032 Lysyl-lysine 2,3-aminomutase Translation elongation factor P lysylation
fig|6666666.229934.peg.1311 CDS CP012958.1 1364226 1364747 3 + 522 Translation elongation factor P Translation elongation factor P lysylation;
Translation elongation factors bacterial
fig|6666666.229934.peg.1312 CDS CP012958.1 1365077 1366453 2 + 1377 Tryptophanase (EC 4.1.99.1) - none -
fig|6666666.229934.peg.1313 CDS CP012958.1 1366799 1367818 2 + 1020 Tyrosine-specific transport protein - none -
fig|6666666.229934.peg.1314 CDS CP012958.1 1368561 1367884 -3 - 678 YheO-like PAS domain - none -
fig|6666666.229934.peg.1315 CDS CP012958.1 1369130 1368624 -2 - 507 Arabinose efflux permease - none -
fig|6666666.229934.peg.1316 CDS CP012958.1 1369854 1369123 -3 - 732 UDP-2,3-diacylglucosamine diphosphatase (EC 3.6.1.54) KDO2-Lipid A biosynthesis;
Llipid A biosynthesis cluster
fig|6666666.229934.peg.1317 CDS CP012958.1 1369965 1370708 3 + 744 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229934.peg.1318 CDS CP012958.1 1370716 1372128 1 + 1413 Putative cell division protein precursor - none -
fig|6666666.229934.peg.1319 CDS CP012958.1 1373062 1372199 -1 - 864 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229934.peg.1320 CDS CP012958.1 1373944 1373204 -1 - 741 Pyruvate formate-lyase activating enzyme (EC 1.97.1.4) Fermentations: Mixed acid
fig|6666666.229934.peg.1321 CDS CP012958.1 1376401 1374089 -1 - 2313 Pyruvate formate-lyase (EC 2.3.1.54) Butanol Biosynthesis;
Fermentations: Mixed acid
fig|6666666.229934.peg.1322 CDS CP012958.1 1377351 1376500 -3 - 852 Formate efflux transporter (TC 2.A.44 family) Fermentations: Mixed acid
fig|6666666.229934.peg.1323 CDS CP012958.1 1377664 1378014 1 + 351 Bis(5@1-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17) pyrimidine conversions
fig|6666666.229934.peg.1324 CDS CP012958.1 1378015 1378368 1 + 354 Predicted periplasmic lipoprotein - none -
fig|6666666.229934.peg.1325 CDS CP012958.1 1378370 1379416 2 + 1047 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) Murein Hydrolases;
Recycling of Peptidoglycan Amino Sugars
fig|6666666.229934.peg.1326 CDS CP012958.1 1379418 1380560 3 + 1143 23S rRNA (Uracil-5-) -methyltransferase rumB (EC 2.1.1.-) RNA methylation
fig|6666666.229934.peg.1327 CDS CP012958.1 1381625 1380660 -2 - 966 6-phosphofructokinase (EC 2.7.1.11) D-Tagatose and Galactitol Utilization;
Glycolysis and Gluconeogenesis
fig|6666666.229934.peg.1328 CDS CP012958.1 1382247 1381687 -3 - 561 Cobalt-zinc-cadmium resistance protein Cobalt-zinc-cadmium resistance
fig|6666666.229934.peg.1329 CDS CP012958.1 1382609 1382271 -2 - 339 Cobalt-zinc-cadmium resistance protein Cobalt-zinc-cadmium resistance
fig|6666666.229934.peg.1330 CDS CP012958.1 1383175 1382609 -1 - 567 FIG00696199: hypothetical protein - none -
fig|6666666.229934.peg.1331 CDS CP012958.1 1383956 1383177 -2 - 780 UPF0246 protein YaaA - none -
fig|6666666.229934.peg.1332 CDS CP012958.1 1384214 1383978 -2 - 237 Uracil-DNA glycosylase, family 1 DNA Repair Base Excision;
Uracil-DNA glycosylase
fig|6666666.229934.peg.1333 CDS CP012958.1 1384650 1384216 -3 - 435 Uracil-DNA glycosylase, family 1 DNA Repair Base Excision;
Uracil-DNA glycosylase
fig|6666666.229934.peg.1334 CDS CP012958.1 1384936 1385319 1 + 384 Pyruvate formate-lyase (EC 2.3.1.54) Butanol Biosynthesis;
Fermentations: Mixed acid
fig|6666666.229934.peg.1335 CDS CP012958.1 1385483 1387279 2 + 1797 Translation elongation factor LepA Heat shock dnaK gene cluster extended;
Translation elongation factors bacterial;
Universal GTPases
fig|6666666.229934.peg.1336 CDS CP012958.1 1387290 1388312 3 + 1023 Signal peptidase I (EC 3.4.21.89) CBSS-176299.4.peg.1292;
Signal peptidase
fig|6666666.229934.peg.1337 CDS CP012958.1 1388319 1388999 3 + 681 Ribonuclease III (EC 3.1.26.3) CBSS-176299.4.peg.1292;
RNA processing and degradation, bacterial
fig|6666666.229934.peg.1338 CDS CP012958.1 1388996 1389904 2 + 909 GTP-binding protein Era Bacterial Cell Division;
CBSS-176299.4.peg.1292;
Glycyl-tRNA synthetase containing cluster;
Universal GTPases;
tRNA modification Archaea
fig|6666666.229934.peg.1339 CDS CP012958.1 1391363 1390008 -2 - 1356 GTPase and tRNA-U34 5-formylation enzyme TrmE Cell Division Subsystem including YidCD;
RNA modification and chromosome partitioning cluster;
RNA modification cluster;
Universal GTPases;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229934.peg.1340 CDS CP012958.1 1393080 1391491 -3 - 1590 Inner membrane protein translocase component YidC, long form CTP synthase (EC 6.3.4.2) cluster;
Cell Division Subsystem including YidCD;
RNA modification cluster
fig|6666666.229934.peg.1341 CDS CP012958.1 1393385 1393122 -2 - 264 Protein YidD Cell Division Subsystem including YidCD;
RNA modification cluster
fig|6666666.229934.peg.1342 CDS CP012958.1 1393675 1393340 -1 - 336 Ribonuclease P protein component (EC 3.1.26.5) Cell Division Subsystem including YidCD;
RNA modification cluster;
tRNA processing
fig|6666666.229934.peg.1343 CDS CP012958.1 1393855 1393721 -1 - 135 LSU ribosomal protein L34p Cell Division Subsystem including YidCD;
RNA modification cluster;
Ribosome LSU bacterial
fig|6666666.229934.peg.1344 CDS CP012958.1 1394273 1395634 2 + 1362 Chromosomal replication initiator protein DnaA Cell Division Subsystem including YidCD;
DNA replication cluster 1
fig|6666666.229934.peg.1345 CDS CP012958.1 1395642 1396745 3 + 1104 DNA polymerase III beta subunit (EC 2.7.7.7) Cell Division Subsystem including YidCD;
DNA replication cluster 1
fig|6666666.229934.peg.1346 CDS CP012958.1 1396749 1397825 3 + 1077 DNA recombination and repair protein RecF Cell Division Subsystem including YidCD;
DNA repair, bacterial RecFOR pathway;
DNA replication cluster 1
fig|6666666.229934.peg.1347 CDS CP012958.1 1398627 1397872 -3 - 756 Ubiquinone/menaquinone biosynthesis methyltransferase UbiE (EC 2.1.1.-) Menaquinone and Phylloquinone Biosynthesis;
Ubiquinone Biosynthesis
fig|6666666.229934.peg.1348 CDS CP012958.1 1398815 1399390 2 + 576 Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1) Oxidative stress;
Protection from Reactive Oxygen Species
fig|6666666.229934.peg.1349 CDS CP012958.1 1399458 1399589 3 + 132 hypothetical protein - none -
fig|6666666.229934.peg.1350 CDS CP012958.1 1399657 1399830 1 + 174 hypothetical protein - none -
fig|6666666.229934.peg.1351 CDS CP012958.1 1399827 1400633 3 + 807 Mobile element protein - none -
fig|6666666.229934.peg.1352 CDS CP012958.1 1401094 1400843 -1 - 252 Transcriptional regulator, XRE family - none -
fig|6666666.229934.peg.1353 CDS CP012958.1 1401245 1402882 2 + 1638 NAD-dependent malic enzyme (EC 1.1.1.38) Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229934.peg.1354 CDS CP012958.1 1404301 1403102 -1 - 1200 NAD(FAD)-utilizing dehydrogenases - none -
fig|6666666.229934.peg.1355 CDS CP012958.1 1405347 1404298 -3 - 1050 Cytochrome c-type heme lyase subunit nrfF, nitrite reductase complex assembly - none -
fig|6666666.229934.peg.1356 CDS CP012958.1 1405874 1405344 -2 - 531 Putative thiol:disulfide oxidoreductase, nitrite reductase complex assembly - none -
fig|6666666.229934.peg.1357 CDS CP012958.1 1407777 1405867 -3 - 1911 Cytochrome c-type heme lyase subunit nrfE, nitrite reductase complex assembly - none -
fig|6666666.229934.peg.1358 CDS CP012958.1 1407799 1408167 1 + 369 hypothetical protein - none -
fig|6666666.229934.peg.1359 CDS CP012958.1 1409329 1408364 -1 - 966 NrfD protein - none -
fig|6666666.229934.peg.1360 CDS CP012958.1 1409949 1409326 -3 - 624 NrfC protein - none -
fig|6666666.229934.peg.1361 CDS CP012958.1 1410665 1410000 -2 - 666 Cytochrome c-type protein NrfB precursor - none -
fig|6666666.229934.peg.1362 CDS CP012958.1 1412262 1410739 -3 - 1524 Cytochrome c552 precursor (EC 1.7.2.2) Soluble cytochromes and functionally related electron carriers
fig|6666666.229934.peg.1363 CDS CP012958.1 1413129 1412839 -3 - 291 hypothetical protein - none -
fig|6666666.229934.peg.1364 CDS CP012958.1 1413620 1413147 -2 - 474 Parvulin-like peptidyl-prolyl isomerase - none -
fig|6666666.229934.peg.1365 CDS CP012958.1 1413770 1413648 -2 - 123 hypothetical protein - none -
fig|6666666.229934.peg.1366 CDS CP012958.1 1414828 1413905 -1 - 924 Cytochrome c heme lyase subunit CcmH Biogenesis of c-type cytochromes;
Copper homeostasis
fig|6666666.229934.peg.1367 CDS CP012958.1 1415280 1414828 -3 - 453 Cytochrome c heme lyase subunit CcmL Biogenesis of c-type cytochromes
fig|6666666.229934.peg.1368 CDS CP012958.1 1415924 1415379 -2 - 546 Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase Biogenesis of c-type cytochromes;
Periplasmic disulfide interchange
fig|6666666.229934.peg.1369 CDS CP012958.1 1417911 1415953 -3 - 1959 Cytochrome c heme lyase subunit CcmF Biogenesis of c-type cytochromes;
Copper homeostasis
fig|6666666.229934.peg.1370 CDS CP012958.1 1418429 1417911 -2 - 519 Cytochrome c-type biogenesis protein CcmE, heme chaperone Biogenesis of c-type cytochromes
fig|6666666.229934.peg.1371 CDS CP012958.1 1418632 1418426 -1 - 207 Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE Biogenesis of c-type cytochromes
fig|6666666.229934.peg.1372 CDS CP012958.1 1419387 1418650 -3 - 738 Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE Biogenesis of c-type cytochromes
fig|6666666.229934.peg.1373 CDS CP012958.1 1420063 1419398 -1 - 666 ABC transporter involved in cytochrome c biogenesis, CcmB subunit Biogenesis of c-type cytochromes
fig|6666666.229934.peg.1374 CDS CP012958.1 1420703 1420068 -2 - 636 ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA Biogenesis of c-type cytochromes
fig|6666666.229934.peg.1375 CDS CP012958.1 1421019 1420852 -3 - 168 hypothetical protein - none -
fig|6666666.229934.peg.1376 CDS CP012958.1 1422067 1420970 -1 - 1098 Bicyclomycin resistance protein - none -
fig|6666666.229934.peg.1377 CDS CP012958.1 1422773 1422072 -2 - 702 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses
fig|6666666.229934.peg.1378 CDS CP012958.1 1422815 1422997 2 + 183 hypothetical protein - none -
fig|6666666.229934.peg.1379 CDS CP012958.1 1422990 1425254 3 + 2265 NADP-dependent malic enzyme (EC 1.1.1.40) Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229934.peg.1380 CDS CP012958.1 1425398 1426042 2 + 645 Manganese superoxide dismutase (EC 1.15.1.1) Oxidative stress;
Protection from Reactive Oxygen Species
fig|6666666.229934.peg.1381 CDS CP012958.1 1426453 1427244 1 + 792 putative lipoprotein - none -
fig|6666666.229934.peg.1382 CDS CP012958.1 1428275 1427448 -2 - 828 YpfJ protein, zinc metalloprotease superfamily Broadly distributed proteins not in subsystems
fig|6666666.229934.peg.1383 CDS CP012958.1 1428415 1428858 1 + 444 FIG00904084: hypothetical protein - none -
fig|6666666.229934.peg.1384 CDS CP012958.1 1429544 1428948 -2 - 597 Acyl-phosphate:glycerol-3-phosphate O-acyltransferase PlsY Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229934.peg.1385 CDS CP012958.1 1429641 1429994 3 + 354 Dihydroneopterin aldolase (EC 4.1.2.25) Folate Biosynthesis;
Folate biosynthesis cluster
fig|6666666.229934.peg.1386 CDS CP012958.1 1430015 1431445 2 + 1431 Transglycosylase, Slt family - none -
fig|6666666.229934.peg.1387 CDS CP012958.1 1431456 1431602 3 + 147 hypothetical protein - none -
fig|6666666.229934.peg.1388 CDS CP012958.1 1432184 1431645 -2 - 540 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation Biogenesis of c-type cytochromes;
Periplasmic disulfide interchange
fig|6666666.229934.peg.1389 CDS CP012958.1 1433752 1432208 -1 - 1545 Na+/H+ antiporter NhaB - none -
fig|6666666.229934.peg.1390 CDS CP012958.1 1433947 1434678 1 + 732 Transcriptional regulator for fatty acid degradation FadR, GntR family - none -
fig|6666666.229934.peg.1391 CDS CP012958.1 1436013 1434799 -3 - 1215 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229934.peg.1392 CDS CP012958.1 1436130 1437434 3 + 1305 Menaquinone-specific isochorismate synthase (EC 5.4.4.2) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229934.peg.1393 CDS CP012958.1 1437425 1439131 2 + 1707 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase (EC 2.2.1.9) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229934.peg.1394 CDS CP012958.1 1439184 1439933 3 + 750 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase (EC 4.2.99.20) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229934.peg.1395 CDS CP012958.1 1440029 1440298 2 + 270 SSU ribosomal protein S15p (S13e) - none -
fig|6666666.229934.peg.1396 CDS CP012958.1 1440506 1441660 2 + 1155 S-adenosylmethionine synthetase (EC 2.5.1.6) Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229934.peg.1397 CDS CP012958.1 1441729 1442229 1 + 501 Protein sprT - none -
fig|6666666.229934.peg.1398 CDS CP012958.1 1442386 1443627 1 + 1242 Serine transporter Glycine and Serine Utilization;
Pyruvate Alanine Serine Interconversions
fig|6666666.229934.peg.1399 CDS CP012958.1 1443720 1445084 3 + 1365 L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17) Glycine and Serine Utilization;
Glycine and Serine Utilization;
Pyruvate Alanine Serine Interconversions;
Pyruvate Alanine Serine Interconversions
fig|6666666.229934.peg.1400 CDS CP012958.1 1446314 1445265 -2 - 1050 L-asparaginase (EC 3.5.1.1) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229934.peg.1401 CDS CP012958.1 1446609 1447748 3 + 1140 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) CBSS-498211.3.peg.1415;
Conserved gene cluster associated with Met-tRNA formyltransferase;
RNA methylation
fig|6666666.229934.peg.1402 CDS CP012958.1 1447770 1448321 3 + 552 Type IV pilus biogenesis protein PilF CBSS-498211.3.peg.1415
fig|6666666.229934.peg.1403 CDS CP012958.1 1448465 1449520 2 + 1056 FIG021952: putative membrane protein CBSS-498211.3.peg.1415
fig|6666666.229934.peg.1404 CDS CP012958.1 1449532 1450635 1 + 1104 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (EC 1.17.7.1) CBSS-498211.3.peg.1415;
CBSS-83331.1.peg.3039;
Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.229934.peg.1405 CDS CP012958.1 1450657 1451934 1 + 1278 Histidyl-tRNA synthetase (EC 6.1.1.21) CBSS-498211.3.peg.1415;
tRNA aminoacylation, His
fig|6666666.229934.peg.1406 CDS CP012958.1 1451945 1452559 2 + 615 Mlr7403 protein CBSS-290633.1.peg.1906;
CBSS-498211.3.peg.1415
fig|6666666.229934.peg.1407 CDS CP012958.1 1452612 1453064 3 + 453 Putative protein-S-isoprenylcysteine methyltransferase - none -
fig|6666666.229934.peg.1408 CDS CP012958.1 1453774 1453070 -1 - 705 Chromosomal replication initiator protein DnaA Cell Division Subsystem including YidCD;
DNA replication cluster 1
fig|6666666.229934.peg.1409 CDS CP012958.1 1453760 1453897 2 + 138 hypothetical protein - none -
fig|6666666.229934.peg.1410 CDS CP012958.1 1455147 1453894 -3 - 1254 Uracil permease De Novo Pyrimidine Synthesis
fig|6666666.229934.peg.1411 CDS CP012958.1 1455897 1455271 -3 - 627 Uracil phosphoribosyltransferase (EC 2.4.2.9) De Novo Pyrimidine Synthesis;
pyrimidine conversions
fig|6666666.229934.peg.1412 CDS CP012958.1 1457879 1456032 -2 - 1848 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase
fig|6666666.229934.peg.1413 CDS CP012958.1 1460285 1458012 -2 - 2274 Glutathione biosynthesis bifunctional protein gshF (EC 6.3.2.2)(EC 6.3.2.3) Glutathione: Biosynthesis and gamma-glutamyl cycle
fig|6666666.229934.peg.1414 CDS CP012958.1 1460413 1460282 -1 - 132 hypothetical protein - none -
fig|6666666.229934.peg.1415 CDS CP012958.1 1460517 1462118 3 + 1602 Dca - none -
fig|6666666.229934.peg.1416 CDS CP012958.1 1462375 1462941 1 + 567 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent;
cAMP signaling in bacteria
fig|6666666.229934.peg.1417 CDS CP012958.1 1462951 1464192 1 + 1242 ATP-dependent Clp protease ATP-binding subunit ClpX Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229934.peg.1418 CDS CP012958.1 1464578 1464255 -2 - 324 FIG074102: hypothetical protein - none -
fig|6666666.229934.peg.1419 CDS CP012958.1 1464735 1464571 -3 - 165 Phage-related protein - none -
fig|6666666.229934.peg.1420 CDS CP012958.1 1465883 1465038 -2 - 846 membrane protein, putative - none -
fig|6666666.229934.peg.1421 CDS CP012958.1 1468115 1465956 -2 - 2160 Copper-translocating P-type ATPase (EC 3.6.3.4) Copper Transport System;
Copper homeostasis
fig|6666666.229934.peg.1422 CDS CP012958.1 1468414 1468202 -1 - 213 Copper chaperone Copper homeostasis
fig|6666666.229934.peg.1423 CDS CP012958.1 1468509 1468895 3 + 387 Cu(I)-responsive transcriptional regulator Copper homeostasis
fig|6666666.229934.peg.1424 CDS CP012958.1 1469173 1469844 1 + 672 Type I restriction-modification system, DNA-methyltransferase subunit M (EC 2.1.1.72) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229934.peg.1425 CDS CP012958.1 1469959 1470927 1 + 969 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229934.peg.1426 CDS CP012958.1 1470953 1471777 2 + 825 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229934.peg.1427 CDS CP012958.1 1471779 1472735 3 + 957 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229934.peg.1428 CDS CP012958.1 1473899 1473063 -2 - 837 COG1720: Uncharacterized conserved protein tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229934.peg.1429 CDS CP012958.1 1474012 1474932 1 + 921 1,4-dihydroxy-2-naphthoate polyprenyltransferase (EC 2.5.1.74) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229934.peg.1430 CDS CP012958.1 1474983 1475483 3 + 501 Ribonuclease E inhibitor RraA RNA processing and degradation, bacterial
fig|6666666.229934.peg.1431 CDS CP012958.1 1475672 1477054 2 + 1383 Arsenic efflux pump protein Arsenic resistance
fig|6666666.229934.peg.1432 CDS CP012958.1 1477657 1477124 -1 - 534 FIG138315: Putative alpha helix protein Putative TldE-TldD proteolytic complex
fig|6666666.229934.peg.1433 CDS CP012958.1 1477778 1479139 2 + 1362 TldE protein, part of TldE/TldD proteolytic complex Putative TldE-TldD proteolytic complex
fig|6666666.229934.peg.1434 CDS CP012958.1 1479378 1479917 3 + 540 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) Cell division-ribosomal stress proteins cluster;
Folate biosynthesis cluster;
Purine conversions
fig|6666666.229934.peg.1435 CDS CP012958.1 1481126 1479987 -2 - 1140 Glycerate kinase (EC 2.7.1.31) D-galactarate, D-glucarate and D-glycerate catabolism;
D-galactarate, D-glucarate and D-glycerate catabolism - gjo;
Glycerate metabolism;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Glycine and Serine Utilization;
Serine-glyoxylate cycle
fig|6666666.229934.peg.1436 CDS CP012958.1 1482397 1481123 -1 - 1275 D-glycerate transporter (predicted) D-galactarate, D-glucarate and D-glycerate catabolism;
D-galactarate, D-glucarate and D-glycerate catabolism - gjo;
Glycerate metabolism
fig|6666666.229934.peg.1437 CDS CP012958.1 1483632 1482529 -3 - 1104 Sugar diacid utilization regulator SdaR D-galactarate, D-glucarate and D-glycerate catabolism;
D-galactarate, D-glucarate and D-glycerate catabolism - gjo
fig|6666666.229934.peg.1438 CDS CP012958.1 1483937 1484548 2 + 612 UDP-glucose dehydrogenase (EC 1.1.1.22) - none -
fig|6666666.229934.peg.1439 CDS CP012958.1 1486420 1484633 -1 - 1788 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) - none -
fig|6666666.229934.peg.1440 CDS CP012958.1 1487449 1486547 -1 - 903 Lipoprotein nlpI precursor - none -
fig|6666666.229934.peg.1441 CDS CP012958.1 1489765 1487534 -1 - 2232 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) Bacterial RNA-metabolizing Zn-dependent hydrolases;
Polyadenylation bacterial
fig|6666666.229934.peg.1442 CDS CP012958.1 1489957 1490427 1 + 471 Putative sugar isomerase involved in processing of exogenous sialic acid Sialic Acid Metabolism
fig|6666666.229934.peg.1443 CDS CP012958.1 1490541 1490416 -3 - 126 hypothetical protein - none -
fig|6666666.229934.peg.1444 CDS CP012958.1 1491554 1490901 -2 - 654 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD Recycling of Peptidoglycan Amino Acids
fig|6666666.229934.peg.1445 CDS CP012958.1 1491577 1492029 1 + 453 Type IV pilin PilA Type IV pilus
fig|6666666.229934.peg.1446 CDS CP012958.1 1492056 1492616 3 + 561 Type IV fimbrial assembly, ATPase PilB Type IV pilus
fig|6666666.229934.peg.1447 CDS CP012958.1 1492597 1493463 1 + 867 Type IV fimbrial assembly, ATPase PilB Type IV pilus
fig|6666666.229934.peg.1448 CDS CP012958.1 1493456 1494679 2 + 1224 Type II secretory pathway, component PulF / Type IV fimbrial assembly protein PilC Type IV pilus
fig|6666666.229934.peg.1449 CDS CP012958.1 1494676 1495365 1 + 690 Leader peptidase (Prepilin peptidase) (EC 3.4.23.43) / N-methyltransferase (EC 2.1.1.-) Type IV pilus;
Type IV pilus
fig|6666666.229934.peg.1450 CDS CP012958.1 1495415 1496038 2 + 624 Dephospho-CoA kinase (EC 2.7.1.24) Coenzyme A Biosynthesis
fig|6666666.229934.peg.1451 CDS CP012958.1 1496028 1496240 3 + 213 FIG003276: zinc-binding protein - none -
fig|6666666.229934.peg.1452 CDS CP012958.1 1496240 1496512 2 + 273 FIG00904058: hypothetical protein - none -
fig|6666666.229934.peg.1453 CDS CP012958.1 1496909 1498282 2 + 1374 Sodium/glycine symporter GlyP - none -
fig|6666666.229934.peg.1454 CDS CP012958.1 1498510 1498833 1 + 324 Ribosome hibernation protein YfiA Ribosome activity modulation
fig|6666666.229934.peg.1455 CDS CP012958.1 1499288 1499536 2 + 249 unknown - none -
fig|6666666.229934.peg.1456 CDS CP012958.1 1500451 1500152 -1 - 300 DNA-binding protein Fis DNA structural proteins, bacterial
fig|6666666.229934.peg.1457 CDS CP012958.1 1501494 1500445 -3 - 1050 tRNA dihydrouridine synthase B (EC 1.-.-.-) tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229934.peg.1458 CDS CP012958.1 1502623 1501739 -1 - 885 Ribosomal protein L11 methyltransferase (EC 2.1.1.-) Heat shock dnaK gene cluster extended;
Ribosome biogenesis bacterial
fig|6666666.229934.peg.1459 CDS CP012958.1 1503178 1502636 -1 - 543 Protein involved in cell division - none -
fig|6666666.229934.peg.1460 CDS CP012958.1 1504633 1503197 -1 - 1437 Pantothenate:Na+ symporter (TC 2.A.21.1.1) CBSS-221988.1.peg.1679;
Coenzyme A Biosynthesis
fig|6666666.229934.peg.1461 CDS CP012958.1 1504902 1504630 -3 - 273 FIG003021: Membrane protein CBSS-221988.1.peg.1679
fig|6666666.229934.peg.1462 CDS CP012958.1 1506314 1504926 -2 - 1389 FOG: TPR repeat - none -
fig|6666666.229934.peg.1463 CDS CP012958.1 1507197 1506433 -3 - 765 Periplasmic protein TonB, links inner and outer membranes - none -
fig|6666666.229934.peg.1464 CDS CP012958.1 1507386 1507252 -3 - 135 hypothetical protein - none -
fig|6666666.229934.peg.1465 CDS CP012958.1 1508841 1507495 -3 - 1347 Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14) CBSS-221988.1.peg.1679;
Fatty Acid Biosynthesis FASII
fig|6666666.229934.peg.1466 CDS CP012958.1 1509351 1508884 -3 - 468 Biotin carboxyl carrier protein of acetyl-CoA carboxylase CBSS-221988.1.peg.1679;
Fatty Acid Biosynthesis FASII
fig|6666666.229934.peg.1467 CDS CP012958.1 1509368 1509520 2 + 153 hypothetical protein - none -
fig|6666666.229934.peg.1468 CDS CP012958.1 1509951 1509475 -3 - 477 3-dehydroquinate dehydratase II (EC 4.2.1.10) CBSS-221988.1.peg.1679;
Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate);
Quinate degradation
fig|6666666.229934.peg.1469 CDS CP012958.1 1511051 1510050 -2 - 1002 O-succinylbenzoate synthase (EC 4.2.1.113) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo;
Muconate lactonizing enzyme family
fig|6666666.229934.peg.1470 CDS CP012958.1 1511361 1511032 -3 - 330 Nucleotidyltransferase (EC 2.7.7.-) - none -
fig|6666666.229934.peg.1471 CDS CP012958.1 1511762 1511343 -2 - 420 Nucleotidyltransferase substrate binding protein, HI0074 - none -
fig|6666666.229934.peg.1472 CDS CP012958.1 1512659 1511802 -2 - 858 Naphthoate synthase (EC 4.1.3.36) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229934.peg.1473 CDS CP012958.1 1513538 1512771 -2 - 768 Triosephosphate isomerase (EC 5.3.1.1) CBSS-331978.3.peg.2915;
Glycolysis and Gluconeogenesis
fig|6666666.229934.peg.1474 CDS CP012958.1 1513711 1514154 1 + 444 Histone acetyltransferase HPA2 and related acetyltransferases CBSS-216591.1.peg.168
fig|6666666.229934.peg.1475 CDS CP012958.1 1515595 1514228 -1 - 1368 Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22) Heme and Siroheme Biosynthesis
fig|6666666.229934.peg.1476 CDS CP012958.1 1516048 1515614 -1 - 435 Periplasmic/membrane protein associated with DUF414 - none -
fig|6666666.229934.peg.1477 CDS CP012958.1 1516621 1516061 -1 - 561 Protein of unknown function DUF414 - none -
fig|6666666.229934.peg.1478 CDS CP012958.1 1517249 1516722 -2 - 528 tRNA-specific adenosine-34 deaminase (EC 3.5.4.-) tRNA modification Bacteria;
tRNA processing;
tRNAmodification position 34
fig|6666666.229934.peg.1479 CDS CP012958.1 1518426 1517575 -3 - 852 Thymidylate synthase (EC 2.1.1.45) Folate Biosynthesis;
pyrimidine conversions
fig|6666666.229934.peg.1480 CDS CP012958.1 1519220 1518423 -2 - 798 Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-) Lipoprotein Biosynthesis
fig|6666666.229934.peg.1481 CDS CP012958.1 1520026 1519229 -1 - 798 Protein of unknown function DUF81 - none -
fig|6666666.229934.peg.1482 CDS CP012958.1 1520628 1520029 -3 - 600 Adenosine (5@1)-pentaphospho-(5@1@1)-adenosine pyrophosphohydrolase (EC 3.6.1.-) CBSS-224911.1.peg.435;
CBSS-364106.7.peg.3204;
Nudix proteins (nucleoside triphosphate hydrolases);
Phosphoglycerate mutase protein family
fig|6666666.229934.peg.1483 CDS CP012958.1 1520848 1521267 1 + 420 Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229934.peg.1484 CDS CP012958.1 1521278 1522786 2 + 1509 Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229934.peg.1485 CDS CP012958.1 1522783 1523679 1 + 897 Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229934.peg.1486 CDS CP012958.1 1523769 1524641 3 + 873 Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229934.peg.1487 CDS CP012958.1 1524724 1525656 1 + 933 Ribokinase (EC 2.7.1.15) D-ribose utilization;
Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.229934.peg.1488 CDS CP012958.1 1525963 1525754 -1 - 210 Cold shock protein CspG Cold shock, CspA family of proteins
fig|6666666.229934.peg.1489 CDS CP012958.1 1527855 1526410 -3 - 1446 Glutamyl-tRNA synthetase (EC 6.1.1.17) Heme and Siroheme Biosynthesis;
tRNA aminoacylation, Glu and Gln
fig|6666666.229934.peg.1490 CDS CP012958.1 1528543 1529331 1 + 789 Mannosyltransferase OCH1 and related enzymes - none -
fig|6666666.229934.peg.1491 CDS CP012958.1 1529444 1530820 2 + 1377 Argininosuccinate lyase (EC 4.3.2.1) - none -
fig|6666666.229934.peg.1492 CDS CP012958.1 1531122 1532471 3 + 1350 NADP-specific glutamate dehydrogenase (EC 1.4.1.4) Arginine and Ornithine Degradation;
Glutamate dehydrogenases;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Proline Synthesis
fig|6666666.229934.peg.1493 CDS CP012958.1 1532960 1534414 2 + 1455 Catalase (EC 1.11.1.6) Oxidative stress;
Protection from Reactive Oxygen Species
fig|6666666.229934.peg.1494 CDS CP012958.1 1535245 1535087 -1 - 159 hypothetical protein - none -
fig|6666666.229934.peg.1495 CDS CP012958.1 1535215 1535349 1 + 135 Integrase - none -
fig|6666666.229934.peg.1496 CDS CP012958.1 1539019 1535543 -1 - 3477 DNA polymerase III alpha subunit (EC 2.7.7.7) - none -
fig|6666666.229934.peg.1497 CDS CP012958.1 1538984 1539163 2 + 180 hypothetical protein - none -
fig|6666666.229934.peg.1498 CDS CP012958.1 1539218 1541005 2 + 1788 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) Biotin biosynthesis;
Biotin synthesis cluster
fig|6666666.229934.peg.1499 CDS CP012958.1 1541022 1541138 3 + 117 hypothetical protein - none -
fig|6666666.229934.peg.1500 CDS CP012958.1 1541884 1547247 1 + 5364 Autotransporter adhesin - none -
fig|6666666.229934.peg.1501 CDS CP012958.1 1547501 1549627 2 + 2127 Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) Ribonucleotide reduction
fig|6666666.229934.peg.1502 CDS CP012958.1 1549808 1549927 2 + 120 hypothetical protein - none -
fig|6666666.229934.peg.1503 CDS CP012958.1 1550195 1550070 -2 - 126 hypothetical protein - none -
fig|6666666.229934.peg.1504 CDS CP012958.1 1550229 1550696 3 + 468 Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) Ribonucleotide reduction
fig|6666666.229934.peg.1505 CDS CP012958.1 1551511 1550723 -1 - 789 Putative deoxyribonuclease YjjV Deoxyribose and Deoxynucleoside Catabolism;
YcfH
fig|6666666.229934.peg.1506 CDS CP012958.1 1551795 1551514 -3 - 282 hypothetical protein - none -
fig|6666666.229934.peg.1507 CDS CP012958.1 1551943 1551788 -1 - 156 hypothetical protein - none -
fig|6666666.229934.peg.1508 CDS CP012958.1 1552549 1552037 -1 - 513 Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase;
Queuosine-Archaeosine Biosynthesis
fig|6666666.229934.peg.1509 CDS CP012958.1 1552619 1554028 2 + 1410 Cysteinyl-tRNA synthetase (EC 6.1.1.16) tRNA aminoacylation, Cys
fig|6666666.229934.peg.1510 CDS CP012958.1 1555138 1554176 -1 - 963 Lipoate synthase Lipoic acid metabolism;
Lipoic acid synthesis cluster
fig|6666666.229934.peg.1511 CDS CP012958.1 1555841 1555203 -2 - 639 Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase Lipoic acid metabolism;
Lipoic acid synthesis cluster
fig|6666666.229934.peg.1512 CDS CP012958.1 1556186 1555887 -2 - 300 Proposed lipoate regulatory protein YbeD Lipoic acid metabolism;
Lipoic acid synthesis cluster
fig|6666666.229934.peg.1513 CDS CP012958.1 1557449 1556259 -2 - 1191 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) Metallocarboxypeptidases (EC 3.4.17.-);
Murein Hydrolases;
Peptidoglycan Biosynthesis
fig|6666666.229934.peg.1514 CDS CP012958.1 1558337 1557480 -2 - 858 Rare lipoprotein A precursor Peptidoglycan Biosynthesis
fig|6666666.229934.peg.1515 CDS CP012958.1 1559507 1558386 -2 - 1122 Rod shape-determining protein RodA Bacterial Cytoskeleton;
Peptidoglycan Biosynthesis
fig|6666666.229934.peg.1516 CDS CP012958.1 1561455 1559494 -3 - 1962 Penicillin-binding protein 2 (PBP-2) 16S rRNA modification within P site of ribosome;
CBSS-83331.1.peg.3039;
Peptidoglycan Biosynthesis
fig|6666666.229934.peg.1517 CDS CP012958.1 1562004 1561468 -3 - 537 LSU m3Psi1915 methyltransferase RlmH RNA methylation;
Ribosome biogenesis bacterial;
tRNA modification Bacteria
fig|6666666.229934.peg.1518 CDS CP012958.1 1562303 1561995 -2 - 309 Iojap protein - none -
fig|6666666.229934.peg.1519 CDS CP012958.1 1563626 1562370 -2 - 1257 ATP-dependent RNA helicase RhlB - none -
fig|6666666.229934.peg.1520 CDS CP012958.1 1563952 1565190 1 + 1239 Transcription termination factor Rho Transcription factors bacterial
fig|6666666.229934.peg.1521 CDS CP012958.1 1566550 1565315 -1 - 1236 Major facilitator superfamily (MFS) transport protein - none -
fig|6666666.229934.peg.1522 CDS CP012958.1 1566637 1566750 1 + 114 hypothetical protein - none -
fig|6666666.229934.peg.1523 CDS CP012958.1 1567015 1566785 -1 - 231 Acyl carrier protein Fatty Acid Biosynthesis FASII;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229934.peg.1524 CDS CP012958.1 1568017 1567289 -1 - 729 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) Fatty Acid Biosynthesis FASII
fig|6666666.229934.peg.1525 CDS CP012958.1 1568980 1568042 -1 - 939 Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39) Fatty Acid Biosynthesis FASII
fig|6666666.229934.peg.1526 CDS CP012958.1 1570037 1569087 -2 - 951 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) Fatty Acid Biosynthesis FASII
fig|6666666.229934.peg.1527 CDS CP012958.1 1571103 1570084 -3 - 1020 Phosphate:acyl-ACP acyltransferase PlsX Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229934.peg.1528 CDS CP012958.1 1571300 1571130 -2 - 171 LSU ribosomal protein L32p Ribosome LSU bacterial
fig|6666666.229934.peg.1529 CDS CP012958.1 1571841 1571317 -3 - 525 COG1399 protein, clustered with ribosomal protein L32p - none -
fig|6666666.229934.peg.1530 CDS CP012958.1 1572554 1571913 -2 - 642 Dethiobiotin synthetase (EC 6.3.3.3) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229934.peg.1531 CDS CP012958.1 1573294 1572554 -1 - 741 Biotin synthesis protein BioC Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229934.peg.1532 CDS CP012958.1 1573962 1573312 -3 - 651 Biotin synthesis protein BioG Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229934.peg.1533 CDS CP012958.1 1575118 1573943 -1 - 1176 8-amino-7-oxononanoate synthase (EC 2.3.1.47) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229934.peg.1534 CDS CP012958.1 1576400 1575111 -2 - 1290 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229934.peg.1535 CDS CP012958.1 1576623 1577492 3 + 870 Phosphatidylserine decarboxylase (EC 4.1.1.65) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229934.peg.1536 CDS CP012958.1 1577518 1578150 1 + 633 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase
fig|6666666.229934.peg.1537 CDS CP012958.1 1578615 1578214 -3 - 402 Glutamate 5-kinase (EC 2.7.2.11) Proline Synthesis
fig|6666666.229934.peg.1538 CDS CP012958.1 1578857 1578645 -2 - 213 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA Proline Synthesis;
Proline Synthesis
fig|6666666.229934.peg.1539 CDS CP012958.1 1579017 1578838 -3 - 180 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA Proline Synthesis;
Proline Synthesis
fig|6666666.229934.peg.1540 CDS CP012958.1 1579168 1579953 1 + 786 FIG023911: putative membrane protein CBSS-316275.9.peg.382
fig|6666666.229934.peg.1541 CDS CP012958.1 1579955 1580419 2 + 465 FIG001826: putative inner membrane protein CBSS-316275.9.peg.382
fig|6666666.229934.peg.1542 CDS CP012958.1 1580459 1580944 2 + 486 Dihydrofolate reductase (EC 1.5.1.3) 5-FCL-like protein;
Folate Biosynthesis
fig|6666666.229934.peg.1543 CDS CP012958.1 1582374 1581064 -3 - 1311 Magnesium and cobalt efflux protein CorC CBSS-56780.10.peg.1536;
Copper homeostasis: copper tolerance;
Glycyl-tRNA synthetase containing cluster;
Magnesium transport;
tRNA-methylthiotransferase containing cluster
fig|6666666.229934.peg.1544 CDS CP012958.1 1582328 1582468 2 + 141 hypothetical protein - none -
fig|6666666.229934.peg.1545 CDS CP012958.1 1582989 1582465 -3 - 525 FIG00696143: hypothetical protein - none -
fig|6666666.229934.peg.1546 CDS CP012958.1 1583803 1583021 -1 - 783 Putative deoxyribonuclease YcfH YcfH
fig|6666666.229934.peg.1547 CDS CP012958.1 1584790 1583807 -1 - 984 DNA polymerase III delta prime subunit (EC 2.7.7.7) - none -
fig|6666666.229934.peg.1548 CDS CP012958.1 1585419 1584787 -3 - 633 Thymidylate kinase (EC 2.7.4.9) pyrimidine conversions
fig|6666666.229934.peg.1549 CDS CP012958.1 1586464 1585421 -1 - 1044 FIG004453: protein YceG like CBSS-323097.3.peg.2594;
Cluster containing Alanyl-tRNA synthetase;
tRNA modification Bacteria
fig|6666666.229934.peg.1550 CDS CP012958.1 1586941 1586603 -1 - 339 Nitrogen regulatory protein P-II Ammonia assimilation
fig|6666666.229934.peg.1551 CDS CP012958.1 1587775 1587017 -1 - 759 Transcriptional regulators of sugar metabolism - none -
fig|6666666.229934.peg.1552 CDS CP012958.1 1588052 1588873 2 + 822 D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) Polyhydroxybutyrate metabolism
fig|6666666.229934.peg.1553 CDS CP012958.1 1588876 1590120 1 + 1245 Predicted pyridoxine biosynthesis protein (probably from glycolaldehide) - none -
fig|6666666.229934.peg.1554 CDS CP012958.1 1590117 1590749 3 + 633 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases - none -
fig|6666666.229934.peg.1555 CDS CP012958.1 1591016 1591528 2 + 513 Hydroxypyruvate isomerase (EC 5.3.1.22) Glycerate metabolism
fig|6666666.229934.peg.1556 CDS CP012958.1 1591617 1592969 3 + 1353 Low-affinity gluconate/H+ symporter GntU D-gluconate and ketogluconates metabolism
fig|6666666.229934.peg.1557 CDS CP012958.1 1592994 1594334 3 + 1341 FIG00782214: hypothetical protein - none -
fig|6666666.229934.peg.1558 CDS CP012958.1 1594685 1595809 2 + 1125 Lysophospholipase (EC 3.1.1.5) Triacylglycerol metabolism
fig|6666666.229934.peg.1559 CDS CP012958.1 1595770 1596477 1 + 708 Lysophospholipase (EC 3.1.1.5) Triacylglycerol metabolism
fig|6666666.229934.peg.1560 CDS CP012958.1 1596673 1597491 1 + 819 HMP-PP hydrolase (pyridoxal phosphatase) Cof, detected in genetic screen for thiamin metabolic genes (PMID:15292217) - none -
fig|6666666.229934.peg.1561 CDS CP012958.1 1600297 1597697 -1 - 2601 DNA mismatch repair protein MutS DNA repair, bacterial MutL-MutS system;
DNA repair system including RecA, MutS and a hypothetical protein
fig|6666666.229934.peg.1562 CDS CP012958.1 1601428 1600382 -1 - 1047 hypothetical protein - none -
fig|6666666.229934.peg.1563 CDS CP012958.1 1602370 1601612 -1 - 759 rRNA small subunit methyltransferase J - none -
fig|6666666.229934.peg.1564 CDS CP012958.1 1603469 1602372 -2 - 1098 tRNA (uracil(54)-C5)-methyltransferase (EC 2.1.1.35) RNA methylation;
tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229934.peg.1565 CDS CP012958.1 1603868 1603539 -2 - 330 Protein yifE - none -
fig|6666666.229934.peg.1566 CDS CP012958.1 1604545 1603928 -1 - 618 Periplasmic thiol:disulfide interchange protein DsbA Biogenesis of c-type cytochromes;
Periplasmic disulfide interchange
fig|6666666.229934.peg.1567 CDS CP012958.1 1604830 1604564 -1 - 267 Protein yihD - none -
fig|6666666.229934.peg.1568 CDS CP012958.1 1604914 1605498 1 + 585 Molybdopterin-guanine dinucleotide biosynthesis protein MobA Molybdenum cofactor biosynthesis;
ar-431-EC Molybdopterin-guanine dinucleotide biosynthesis
fig|6666666.229934.peg.1569 CDS CP012958.1 1605597 1606127 3 + 531 ATPases involved in chromosome partitioning - none -
fig|6666666.229934.peg.1570 CDS CP012958.1 1606239 1607768 3 + 1530 Fructose-specific phosphocarrier protein HPr (EC 2.7.1.69) / PTS system, fructose-specific IIA component (EC 2.7.1.69) Fructose utilization;
Fructose utilization
fig|6666666.229934.peg.1571 CDS CP012958.1 1607771 1608712 2 + 942 1-phosphofructokinase (EC 2.7.1.56) Fructose utilization
fig|6666666.229934.peg.1572 CDS CP012958.1 1608717 1610381 3 + 1665 PTS system, fructose-specific IIB component (EC 2.7.1.69) / PTS system, fructose-specific IIC component (EC 2.7.1.69) Fructose utilization;
Fructose utilization
fig|6666666.229934.peg.1573 CDS CP012958.1 1610403 1610681 3 + 279 hypothetical protein - none -
fig|6666666.229934.peg.1574 CDS CP012958.1 1610716 1610847 1 + 132 hypothetical protein - none -
fig|6666666.229934.peg.1575 CDS CP012958.1 1611398 1610877 -2 - 522 LysR family regulatory protein CidR Murein hydrolase regulation and cell death
fig|6666666.229934.peg.1576 CDS CP012958.1 1611413 1611964 2 + 552 NAD(P)H oxidoreductase YRKL (EC 1.6.99.-) @ Putative NADPH-quinone reductase (modulator of drug activity B) @ Flavodoxin 2 Flavodoxin;
Flavodoxin
fig|6666666.229934.peg.1577 CDS CP012958.1 1612004 1612342 2 + 339 hypothetical protein - none -
fig|6666666.229934.peg.1578 CDS CP012958.1 1612488 1613192 3 + 705 hypothetical protein - none -
fig|6666666.229934.peg.1579 CDS CP012958.1 1613634 1614044 3 + 411 Preprotein translocase subunit SecE (TC 3.A.5.1.1) LSU ribosomal proteins cluster
fig|6666666.229934.peg.1580 CDS CP012958.1 1614046 1614597 1 + 552 Transcription antitermination protein NusG LSU ribosomal proteins cluster;
Transcription factors bacterial
fig|6666666.229934.peg.1581 CDS CP012958.1 1614753 1615181 3 + 429 LSU ribosomal protein L11p (L12e) LSU ribosomal proteins cluster;
Ribosome LSU bacterial
fig|6666666.229934.peg.1582 CDS CP012958.1 1615186 1615875 1 + 690 LSU ribosomal protein L1p (L10Ae) LSU ribosomal proteins cluster;
Ribosome LSU bacterial
fig|6666666.229934.peg.1583 CDS CP012958.1 1615890 1616066 3 + 177 hypothetical protein - none -
fig|6666666.229934.peg.1584 CDS CP012958.1 1616237 1616728 2 + 492 LSU ribosomal protein L10p (P0) LSU ribosomal proteins cluster;
Ribosome LSU bacterial
fig|6666666.229934.peg.1585 CDS CP012958.1 1616780 1617151 2 + 372 LSU ribosomal protein L7/L12 (P1/P2) LSU ribosomal proteins cluster;
Ribosome LSU bacterial
fig|6666666.229934.peg.1586 CDS CP012958.1 1617422 1621450 2 + 4029 DNA-directed RNA polymerase beta subunit (EC 2.7.7.6) Mycobacterium virulence operon involved in DNA transcription;
RNA polymerase bacterial
fig|6666666.229934.peg.1587 CDS CP012958.1 1621553 1625821 2 + 4269 DNA-directed RNA polymerase beta@1 subunit (EC 2.7.7.6) Mycobacterium virulence operon involved in DNA transcription;
RNA polymerase bacterial
fig|6666666.229934.peg.1588 CDS CP012958.1 1626854 1626597 -2 - 258 SSU ribosomal protein S17p (S11e) - none -
fig|6666666.229934.peg.1589 CDS CP012958.1 1627045 1626854 -1 - 192 LSU ribosomal protein L29p (L35e) Ribosome LSU bacterial
fig|6666666.229934.peg.1590 CDS CP012958.1 1627455 1627045 -3 - 411 LSU ribosomal protein L16p (L10e) Ribosome LSU bacterial
fig|6666666.229934.peg.1591 CDS CP012958.1 1628176 1627469 -1 - 708 SSU ribosomal protein S3p (S3e) - none -
fig|6666666.229934.peg.1592 CDS CP012958.1 1628525 1628193 -2 - 333 LSU ribosomal protein L22p (L17e) Ribosome LSU bacterial
fig|6666666.229934.peg.1593 CDS CP012958.1 1628682 1628536 -3 - 147 SSU ribosomal protein S19p (S15e) - none -
fig|6666666.229934.peg.1594 CDS CP012958.1 1629658 1628837 -1 - 822 LSU ribosomal protein L2p (L8e) Ribosome LSU bacterial
fig|6666666.229934.peg.1595 CDS CP012958.1 1629981 1629679 -3 - 303 LSU ribosomal protein L23p (L23Ae) Ribosome LSU bacterial
fig|6666666.229934.peg.1596 CDS CP012958.1 1630580 1629978 -2 - 603 LSU ribosomal protein L4p (L1e) Ribosome LSU bacterial
fig|6666666.229934.peg.1597 CDS CP012958.1 1631222 1630596 -2 - 627 LSU ribosomal protein L3p (L3e) Ribosome LSU bacterial
fig|6666666.229934.peg.1598 CDS CP012958.1 1631550 1631239 -3 - 312 SSU ribosomal protein S10p (S20e) - none -
fig|6666666.229934.peg.1599 CDS CP012958.1 1632696 1631800 -3 - 897 Transcriptional regulators, LysR family - none -
fig|6666666.229934.peg.1600 CDS CP012958.1 1632970 1633452 1 + 483 Acetyl-CoA:acetoacetyl-CoA transferase, alpha subunit (EC 2.8.3.8) - none -
fig|6666666.229934.peg.1601 CDS CP012958.1 1633427 1633624 2 + 198 Acetyl-CoA:acetoacetyl-CoA transferase, alpha subunit (EC 2.8.3.8) - none -
fig|6666666.229934.peg.1602 CDS CP012958.1 1633636 1634301 1 + 666 Acetyl-CoA:acetoacetyl-CoA transferase, beta subunit (EC 2.8.3.8) - none -
fig|6666666.229934.peg.1603 CDS CP012958.1 1634304 1635647 3 + 1344 Short chain fatty acids transporter Polyhydroxybutyrate metabolism
fig|6666666.229934.peg.1604 CDS CP012958.1 1635665 1636588 2 + 924 Acetyl-CoA acetyltransferase (EC 2.3.1.9) Butanol Biosynthesis;
Isoprenoid Biosynthesis;
Polyhydroxybutyrate metabolism;
Serine-glyoxylate cycle
fig|6666666.229934.peg.1605 CDS CP012958.1 1636569 1636835 3 + 267 Acetyl-CoA acetyltransferase (EC 2.3.1.9) Butanol Biosynthesis;
Isoprenoid Biosynthesis;
Polyhydroxybutyrate metabolism;
Serine-glyoxylate cycle
fig|6666666.229934.peg.1606 CDS CP012958.1 1637400 1636933 -3 - 468 Transcriptional regulator, AsnC family - none -
fig|6666666.229934.peg.1607 CDS CP012958.1 1639020 1637491 -3 - 1530 Arginine/ornithine antiporter ArcD Arginine Deiminase Pathway;
Arginine and Ornithine Degradation;
Polyamine Metabolism
fig|6666666.229934.peg.1608 CDS CP012958.1 1640069 1639137 -2 - 933 Carbamate kinase (EC 2.7.2.2) Arginine Deiminase Pathway;
Arginine and Ornithine Degradation;
Polyamine Metabolism
fig|6666666.229934.peg.1609 CDS CP012958.1 1641083 1640079 -2 - 1005 Ornithine carbamoyltransferase (EC 2.1.3.3) Arginine Deiminase Pathway;
Arginine and Ornithine Degradation
fig|6666666.229934.peg.1610 CDS CP012958.1 1641326 1642717 2 + 1392 Chloride channel protein - none -
fig|6666666.229934.peg.1611 CDS CP012958.1 1642720 1643703 1 + 984 tRNA dihydrouridine synthase A - none -
fig|6666666.229934.peg.1612 CDS CP012958.1 1644751 1643759 -1 - 993 Aspartate--ammonia ligase (EC 6.3.1.1) CBSS-262728.1.peg.1737;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229934.peg.1613 CDS CP012958.1 1644917 1645369 2 + 453 Regulatory protein AsnC CBSS-262728.1.peg.1737
fig|6666666.229934.peg.1614 CDS CP012958.1 1645403 1646161 2 + 759 Uridine phosphorylase (EC 2.4.2.3) pyrimidine conversions
fig|6666666.229934.peg.1615 CDS CP012958.1 1647359 1646298 -2 - 1062 Putative permease PerM (= YfgO) - none -
fig|6666666.229934.peg.1616 CDS CP012958.1 1647433 1647783 1 + 351 Arsenate reductase (EC 1.20.4.1) Anaerobic respiratory reductases;
Arsenic resistance;
Transcription repair cluster
fig|6666666.229934.peg.1617 CDS CP012958.1 1648249 1647887 -1 - 363 FIG00696564: hypothetical protein - none -
fig|6666666.229934.peg.1618 CDS CP012958.1 1648484 1648200 -2 - 285 hypothetical protein - none -
fig|6666666.229934.peg.1619 CDS CP012958.1 1648693 1650024 1 + 1332 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase Methylthiotransferases;
Ribosomal protein S12p Asp methylthiotransferase
fig|6666666.229934.peg.1620 CDS CP012958.1 1650149 1650553 2 + 405 Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48) LMPTP YfkJ cluster;
Protein deglycation
fig|6666666.229934.peg.1621 CDS CP012958.1 1650680 1650898 2 + 219 hypothetical protein - none -
fig|6666666.229934.peg.1622 CDS CP012958.1 1651566 1650970 -3 - 597 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) G3E family of P-loop GTPases (metallocenter biosynthesis);
Peptidyl-prolyl cis-trans isomerase;
Potassium homeostasis
fig|6666666.229934.peg.1623 CDS CP012958.1 1652380 1651661 -1 - 720 probable periplasmic protein NMA1059 - none -
fig|6666666.229934.peg.1624 CDS CP012958.1 1652865 1652431 -3 - 435 Ribonuclease E inhibitor RraB RNA processing and degradation, bacterial
fig|6666666.229934.peg.1625 CDS CP012958.1 1653355 1652960 -1 - 396 Large-conductance mechanosensitive channel Potassium homeostasis
fig|6666666.229934.peg.1626 CDS CP012958.1 1654841 1653465 -2 - 1377 Trk system potassium uptake protein TrkA Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Hyperosmotic potassium uptake;
Potassium homeostasis;
Potassium homeostasis
fig|6666666.229934.peg.1627 CDS CP012958.1 1656220 1654865 -1 - 1356 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) - none -
fig|6666666.229934.peg.1628 CDS CP012958.1 1657176 1656220 -3 - 957 Methionyl-tRNA formyltransferase (EC 2.1.2.9) Conserved gene cluster associated with Met-tRNA formyltransferase;
Translation initiation factors bacterial
fig|6666666.229934.peg.1629 CDS CP012958.1 1657754 1657242 -2 - 513 Peptide deformylase (EC 3.5.1.88) Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Translation termination factors bacterial
fig|6666666.229934.peg.1631 CDS CP012958.1 1664237 1663725 -2 - 513 Protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-) Heme and Siroheme Biosynthesis;
Transport system clustering with HemG
fig|6666666.229934.peg.1632 CDS CP012958.1 1665700 1664237 -1 - 1464 Potassium uptake protein TrkH Hyperosmotic potassium uptake;
Potassium homeostasis;
Potassium homeostasis;
Transport system clustering with HemG
fig|6666666.229934.peg.1633 CDS CP012958.1 1666238 1665966 -2 - 273 FIG000605: protein co-occurring with transport systems (COG1739) Transport system clustering with HemG
fig|6666666.229934.peg.1634 CDS CP012958.1 1666326 1666571 3 + 246 tRNA 5-methylaminomethyl-2-thiouridine synthase TusA mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.229934.peg.1635 CDS CP012958.1 1666891 1668162 1 + 1272 Nicotinamide-nucleotide adenylyltransferase, NadR family (EC 2.7.7.1) / Ribosylnicotinamide kinase (EC 2.7.1.22) NAD and NADP cofactor biosynthesis global;
NAD and NADP cofactor biosynthesis global
fig|6666666.229934.peg.1636 CDS CP012958.1 1668178 1668861 1 + 684 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases - none -
fig|6666666.229934.peg.1637 CDS CP012958.1 1668991 1670220 1 + 1230 Tyrosine-specific transport protein - none -
fig|6666666.229934.peg.1638 CDS CP012958.1 1671631 1671242 -1 - 390 LSU ribosomal protein L17p Ribosome LSU bacterial
fig|6666666.229934.peg.1639 CDS CP012958.1 1672662 1671673 -3 - 990 DNA-directed RNA polymerase alpha subunit (EC 2.7.7.6) RNA polymerase bacterial
fig|6666666.229934.peg.1640 CDS CP012958.1 1673299 1672691 -1 - 609 SSU ribosomal protein S4p (S9e) - none -
fig|6666666.229934.peg.1641 CDS CP012958.1 1673730 1673341 -3 - 390 SSU ribosomal protein S11p (S14e) - none -
fig|6666666.229934.peg.1642 CDS CP012958.1 1674102 1673746 -3 - 357 SSU ribosomal protein S13p (S18e) - none -
fig|6666666.229934.peg.1643 CDS CP012958.1 1674357 1674244 -3 - 114 LSU ribosomal protein L36p Ribosome LSU bacterial
fig|6666666.229934.peg.1644 CDS CP012958.1 1675708 1674383 -1 - 1326 Preprotein translocase secY subunit (TC 3.A.5.1.1) - none -
fig|6666666.229934.peg.1645 CDS CP012958.1 1676146 1675712 -1 - 435 LSU ribosomal protein L15p (L27Ae) Ribosome LSU bacterial
fig|6666666.229934.peg.1646 CDS CP012958.1 1676836 1676336 -1 - 501 SSU ribosomal protein S5p (S2e) - none -
fig|6666666.229934.peg.1647 CDS CP012958.1 1677157 1676852 -1 - 306 LSU ribosomal protein L18p (L5e) Ribosome LSU bacterial
fig|6666666.229934.peg.1648 CDS CP012958.1 1677752 1677219 -2 - 534 LSU ribosomal protein L6p (L9e) Ribosome LSU bacterial
fig|6666666.229934.peg.1649 CDS CP012958.1 1678160 1677768 -2 - 393 SSU ribosomal protein S8p (S15Ae) - none -
fig|6666666.229934.peg.1650 CDS CP012958.1 1678943 1678515 -2 - 429 LSU ribosomal protein L5p (L11e) Ribosome LSU bacterial
fig|6666666.229934.peg.1651 CDS CP012958.1 1679383 1679072 -1 - 312 LSU ribosomal protein L24p (L26e) Ribosome LSU bacterial
fig|6666666.229934.peg.1652 CDS CP012958.1 1682426 1680792 -2 - 1635 CTP synthase (EC 6.3.4.2) CTP synthase (EC 6.3.4.2) cluster;
pyrimidine conversions
fig|6666666.229934.peg.1653 CDS CP012958.1 1682540 1683955 2 + 1416 Branched-chain amino acid transport system carrier protein - none -
fig|6666666.229934.peg.1654 CDS CP012958.1 1684134 1684265 3 + 132 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) / Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) Riboflavin synthesis cluster
fig|6666666.229934.peg.1655 CDS CP012958.1 1685036 1684452 -2 - 585 NfuA Fe-S protein maturation Biotin biosynthesis Experimental;
DNA uptake cluster
fig|6666666.229934.peg.1656 CDS CP012958.1 1685839 1685153 -1 - 687 Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy Biotin biosynthesis Experimental;
Biotin synthesis cluster;
CBSS-216591.1.peg.168
fig|6666666.229934.peg.1657 CDS CP012958.1 1685985 1686797 3 + 813 HMP-PP hydrolase (pyridoxal phosphatase) Cof, detected in genetic screen for thiamin metabolic genes (PMID:15292217) - none -
fig|6666666.229934.peg.1658 CDS CP012958.1 1686981 1688093 3 + 1113 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch;
Threonine and Homoserine Biosynthesis
fig|6666666.229934.peg.1659 CDS CP012958.1 1688747 1688166 -2 - 582 Late competence protein ComEA, DNA receptor - none -
fig|6666666.229934.peg.1660 CDS CP012958.1 1689012 1691582 3 + 2571 ClpB protein Protein chaperones;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229934.peg.1661 CDS CP012958.1 1691711 1691592 -2 - 120 hypothetical protein - none -
fig|6666666.229934.peg.1662 CDS CP012958.1 1692184 1691684 -1 - 501 hypothetical protein - none -
fig|6666666.229934.peg.1663 CDS CP012958.1 1692367 1693395 1 + 1029 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) - none -
fig|6666666.229934.peg.1664 CDS CP012958.1 1693395 1693574 3 + 180 hypothetical protein - none -
fig|6666666.229934.peg.1665 CDS CP012958.1 1693653 1694477 3 + 825 Diaminopimelate epimerase (EC 5.1.1.7) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229934.peg.1666 CDS CP012958.1 1694487 1695377 3 + 891 Tyrosine recombinase XerC - none -
fig|6666666.229934.peg.1667 CDS CP012958.1 1695391 1696104 1 + 714 Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5@1-phosphoribitylamino)uracil phosphatase Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants
fig|6666666.229934.peg.1668 CDS CP012958.1 1696630 1696205 -1 - 426 Excinuclease ATPase subunit - none -
fig|6666666.229934.peg.1669 CDS CP012958.1 1696658 1696981 2 + 324 hypothetical protein - none -
fig|6666666.229934.peg.1670 CDS CP012958.1 1697011 1697754 1 + 744 3-oxoacyl-[ACP] synthase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229934.peg.1671 CDS CP012958.1 1697739 1698527 3 + 789 FIG018329: 1-acyl-sn-glycerol-3-phosphate acyltransferase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229934.peg.1672 CDS CP012958.1 1698505 1698768 1 + 264 Acyl carrier protein (ACP1) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229934.peg.1673 CDS CP012958.1 1698771 1699022 3 + 252 Acyl carrier protein (ACP2) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229934.peg.1674 CDS CP012958.1 1699022 1700689 2 + 1668 FIGfam138462: Acyl-CoA synthetase, AMP-(fatty) acid ligase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229934.peg.1675 CDS CP012958.1 1700714 1701259 2 + 546 FIG017861: hypothetical protein Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229934.peg.1676 CDS CP012958.1 1701256 1702617 1 + 1362 FIGfam138462: Acyl-CoA synthetase, AMP-(fatty) acid ligase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229934.peg.1677 CDS CP012958.1 1702617 1703339 3 + 723 FIG143263: Glycosyl transferase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229934.peg.1678 CDS CP012958.1 1703336 1704262 2 + 927 Lysophospholipid acyltransferase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229934.peg.1679 CDS CP012958.1 1704259 1704705 1 + 447 FIG002571: 4-hydroxybenzoyl-CoA thioesterase domain protein Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229934.peg.1680 CDS CP012958.1 1704702 1705286 3 + 585 FIG027190: Putative transmembrane protein Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229934.peg.1681 CDS CP012958.1 1705293 1707566 3 + 2274 FIG021862: membrane protein, exporter Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229934.peg.1682 CDS CP012958.1 1707696 1708175 3 + 480 FIG085779: Lipoprotein Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229934.peg.1683 CDS CP012958.1 1708184 1709407 2 + 1224 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) FabV like Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229934.peg.1684 CDS CP012958.1 1709400 1709843 3 + 444 3-hydroxydecanoyl-[ACP] dehydratase (EC 4.2.1.60) Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229934.peg.1685 CDS CP012958.1 1709893 1710621 1 + 729 3-oxoacyl-[ACP] reductase (EC 1.1.1.100) Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229934.peg.1686 CDS CP012958.1 1710641 1711885 2 + 1245 FIG138576: 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229934.peg.1687 CDS CP012958.1 1713750 1712296 -3 - 1455 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) D-gluconate and ketogluconates metabolism;
Pentose phosphate pathway
fig|6666666.229934.peg.1688 CDS CP012958.1 1713771 1713917 3 + 147 hypothetical protein - none -
fig|6666666.229934.peg.1689 CDS CP012958.1 1714764 1714306 -3 - 459 Uncharacterized virulence-associated protein D - none -
fig|6666666.229934.peg.1690 CDS CP012958.1 1715098 1714844 -1 - 255 Glutaredoxin-related protein Glutaredoxins
fig|6666666.229934.peg.1691 CDS CP012958.1 1715803 1715111 -1 - 693 Aspartate racemase (EC 5.1.1.13) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229934.peg.1692 CDS CP012958.1 1716346 1715918 -1 - 429 FIG00848466: hypothetical protein - none -
fig|6666666.229934.peg.1693 CDS CP012958.1 1717371 1716673 -3 - 699 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type Entner-Doudoroff Pathway;
Pentose phosphate pathway
fig|6666666.229934.peg.1694 CDS CP012958.1 1719108 1717624 -3 - 1485 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) Entner-Doudoroff Pathway;
Pentose phosphate pathway
fig|6666666.229934.peg.1695 CDS CP012958.1 1719999 1719190 -3 - 810 3@1(2@1),5@1-bisphosphate nucleotidase (EC 3.1.3.7) - none -
fig|6666666.229934.peg.1696 CDS CP012958.1 1720465 1720037 -1 - 429 hypothetical protein - none -
fig|6666666.229934.peg.1697 CDS CP012958.1 1722533 1720527 -2 - 2007 oligopeptide transporter - none -
fig|6666666.229934.peg.1698 CDS CP012958.1 1722902 1723528 2 + 627 membrane protein ykgB - none -
fig|6666666.229934.peg.1699 CDS CP012958.1 1723598 1724479 2 + 882 Transcriptional regulator, AraC family - none -
fig|6666666.229934.peg.1700 CDS CP012958.1 1725074 1724484 -2 - 591 ADP compounds hydrolase NudE (EC 3.6.1.-) Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229934.peg.1701 CDS CP012958.1 1725113 1725772 2 + 660 FIG001957: putative hydrolase CBSS-584.1.peg.3382
fig|6666666.229934.peg.1702 CDS CP012958.1 1725785 1726201 2 + 417 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) CBSS-584.1.peg.3382;
Cell division-ribosomal stress proteins cluster;
DNA replication cluster 1;
Heat shock dnaK gene cluster extended
fig|6666666.229934.peg.1703 CDS CP012958.1 1726269 1727141 3 + 873 33 kDa chaperonin (Heat shock protein 33) (HSP33) CBSS-584.1.peg.3382
fig|6666666.229934.peg.1704 CDS CP012958.1 1727544 1727768 3 + 225 Twin-arginine translocation protein TatA Cluster-based Subsystem Grouping Hypotheticals - perhaps Proteosome Related;
Twin-arginine translocation system
fig|6666666.229934.peg.1705 CDS CP012958.1 1727772 1728434 3 + 663 Twin-arginine translocation protein TatB Twin-arginine translocation system
fig|6666666.229934.peg.1706 CDS CP012958.1 1728472 1729236 1 + 765 Twin-arginine translocation protein TatC Cluster-based Subsystem Grouping Hypotheticals - perhaps Proteosome Related;
Twin-arginine translocation system
fig|6666666.229934.peg.1707 CDS CP012958.1 1729255 1730277 1 + 1023 Porphobilinogen synthase (EC 4.2.1.24) Heme and Siroheme Biosynthesis
fig|6666666.229934.peg.1708 CDS CP012958.1 1732570 1730489 -1 - 2082 Glycyl-tRNA synthetase beta chain (EC 6.1.1.14) Glycyl-tRNA synthetase;
Glycyl-tRNA synthetase containing cluster;
tRNA aminoacylation, Gly
fig|6666666.229934.peg.1709 CDS CP012958.1 1733356 1732652 -1 - 705 hypothetical protein - none -
fig|6666666.229934.peg.1710 CDS CP012958.1 1733737 1733447 -1 - 291 ISSo9, nucleotidyltransferase domain protein - none -
fig|6666666.229934.peg.1711 CDS CP012958.1 1734165 1733905 -3 - 261 Glutaredoxin-related protein Glutaredoxins
fig|6666666.229934.peg.1712 CDS CP012958.1 1735120 1734215 -1 - 906 Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14) Glycyl-tRNA synthetase;
Glycyl-tRNA synthetase containing cluster;
tRNA aminoacylation, Gly
fig|6666666.229934.peg.1713 CDS CP012958.1 1735473 1735312 -3 - 162 Ferredoxin-type protein NapF (periplasmic nitrate reductase) - none -
fig|6666666.229934.peg.1714 CDS CP012958.1 1736092 1735487 -1 - 606 Putative oxidoreductase component of anaerobic dehydrogenases; Functional role page for Chaperone protein TorD - none -
fig|6666666.229934.peg.1715 CDS CP012958.1 1736979 1736140 -3 - 840 Anaerobic dimethyl sulfoxide reductase chain C (EC 1.8.5.3) - none -
fig|6666666.229934.peg.1716 CDS CP012958.1 1737598 1736981 -1 - 618 Anaerobic dimethyl sulfoxide reductase chain B (EC 1.8.5.3) - none -
fig|6666666.229934.peg.1717 CDS CP012958.1 1740029 1737609 -2 - 2421 Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-) Anaerobic respiratory reductases
fig|6666666.229934.peg.1718 CDS CP012958.1 1740304 1740164 -1 - 141 hypothetical protein - none -
fig|6666666.229934.peg.1719 CDS CP012958.1 1741526 1741089 -2 - 438 cell filamentation-like protein - none -
fig|6666666.229934.peg.1720 CDS CP012958.1 1742274 1742089 -3 - 186 hypothetical protein - none -
fig|6666666.229934.peg.1721 CDS CP012958.1 1742653 1742504 -1 - 150 hypothetical protein - none -
fig|6666666.229934.peg.1722 CDS CP012958.1 1743440 1742628 -2 - 813 cell filamentation-like protein - none -
fig|6666666.229934.peg.1723 CDS CP012958.1 1743600 1743421 -3 - 180 hypothetical protein - none -
fig|6666666.229934.peg.1724 CDS CP012958.1 1743749 1743618 -2 - 132 hypothetical protein - none -
fig|6666666.229934.peg.1725 CDS CP012958.1 1744183 1743929 -1 - 255 hypothetical protein - none -
fig|6666666.229934.peg.1726 CDS CP012958.1 1746198 1745440 -3 - 759 Ferric siderophore transport system, periplasmic binding protein TonB Hemin transport system;
Ton and Tol transport systems
fig|6666666.229934.peg.1727 CDS CP012958.1 1746654 1746208 -3 - 447 Biopolymer transport protein ExbD/TolR Ton and Tol transport systems
fig|6666666.229934.peg.1728 CDS CP012958.1 1747128 1746658 -3 - 471 Ferric siderophore transport system, biopolymer transport protein ExbB Ton and Tol transport systems
fig|6666666.229934.peg.1729 CDS CP012958.1 1748565 1747303 -3 - 1263 Magnesium and cobalt efflux protein CorC CBSS-56780.10.peg.1536;
Copper homeostasis: copper tolerance;
Glycyl-tRNA synthetase containing cluster;
Magnesium transport;
tRNA-methylthiotransferase containing cluster
fig|6666666.229934.peg.1730 CDS CP012958.1 1749437 1748640 -2 - 798 FIG001154: CcsA-related protein - none -
fig|6666666.229934.peg.1731 CDS CP012958.1 1749591 1750970 3 + 1380 Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1) Bacterial signal recognition particle (SRP);
Universal GTPases
fig|6666666.229934.peg.1732 CDS CP012958.1 1751257 1751123 -1 - 135 hypothetical protein - none -
fig|6666666.229934.peg.1733 CDS CP012958.1 1752440 1751610 -2 - 831 S-formylglutathione hydrolase (EC 3.1.2.12) Glutathione-dependent pathway of formaldehyde detoxification
fig|6666666.229934.peg.1734 CDS CP012958.1 1753579 1752455 -1 - 1125 S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) Glutathione-dependent pathway of formaldehyde detoxification
fig|6666666.229934.peg.1735 CDS CP012958.1 1753717 1753989 1 + 273 Transcriptional regulator, MerR family Cobalt-zinc-cadmium resistance
fig|6666666.229934.peg.1736 CDS CP012958.1 1753993 1754124 1 + 132 Transcriptional regulator, MerR family Cobalt-zinc-cadmium resistance
fig|6666666.229934.peg.1737 CDS CP012958.1 1754987 1754238 -2 - 750 Sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140) - none -
fig|6666666.229934.peg.1738 CDS CP012958.1 1755093 1754980 -3 - 114 hypothetical protein - none -
fig|6666666.229934.peg.1739 CDS CP012958.1 1756576 1755209 -1 - 1368 Adenylosuccinate lyase (EC 4.3.2.2) CBSS-354.1.peg.876;
Purine conversions
fig|6666666.229934.peg.1740 CDS CP012958.1 1757211 1756600 -3 - 612 FIG002903: a protein of unknown function perhaps involved in purine metabolism CBSS-354.1.peg.876
fig|6666666.229934.peg.1741 CDS CP012958.1 1757324 1757734 2 + 411 Copper metallochaperone, bacterial analog of Cox17 protein Biogenesis of cytochrome c oxidases
fig|6666666.229934.peg.1742 CDS CP012958.1 1757873 1758409 2 + 537 Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR De Novo Pyrimidine Synthesis;
De Novo Pyrimidine Synthesis;
pyrimidine conversions
fig|6666666.229934.peg.1743 CDS CP012958.1 1758474 1759406 3 + 933 Survival protein SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA) (EC 5.2.1.8) Lipopolysaccharide assembly;
Peptidyl-prolyl cis-trans isomerase;
Periplasmic Stress Response
fig|6666666.229934.peg.1744 CDS CP012958.1 1759484 1760347 2 + 864 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase (EC 2.1.1.182) RNA methylation;
Ribosome biogenesis bacterial
fig|6666666.229934.peg.1745 CDS CP012958.1 1760363 1761190 2 + 828 Bis(5@1-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) - none -
fig|6666666.229934.peg.1746 CDS CP012958.1 1761281 1761700 2 + 420 nucleotidyltransferase substrate binding protein, HI0074 family - none -
fig|6666666.229934.peg.1747 CDS CP012958.1 1761684 1761977 3 + 294 nucleotidyltransferase - none -
fig|6666666.229934.peg.1748 CDS CP012958.1 1762005 1762562 3 + 558 FIG00696423: hypothetical protein - none -
fig|6666666.229934.peg.1749 CDS CP012958.1 1762517 1762633 2 + 117 hypothetical protein - none -
fig|6666666.229934.peg.1750 CDS CP012958.1 1762605 1762775 3 + 171 hypothetical protein - none -
fig|6666666.229934.peg.1751 CDS CP012958.1 1762753 1765341 1 + 2589 Leucyl-tRNA synthetase (EC 6.1.1.4) CBSS-208964.1.peg.3988;
tRNA aminoacylation, Leu
fig|6666666.229934.peg.1752 CDS CP012958.1 1765494 1765366 -3 - 129 hypothetical protein - none -
fig|6666666.229934.peg.1753 CDS CP012958.1 1765483 1765986 1 + 504 LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B) CBSS-208964.1.peg.3988;
KDO2-Lipid A biosynthesis;
Lipopolysaccharide assembly
fig|6666666.229934.peg.1754 CDS CP012958.1 1765986 1767020 3 + 1035 DNA polymerase III delta subunit (EC 2.7.7.7) CBSS-208964.1.peg.3988
fig|6666666.229934.peg.1755 CDS CP012958.1 1767916 1767512 -1 - 405 Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-) Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229934.peg.1756 CDS CP012958.1 1770755 1767993 -2 - 2763 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) - none -
fig|6666666.229934.peg.1757 CDS CP012958.1 1771082 1770765 -2 - 318 hypothetical protein - none -
fig|6666666.229934.peg.1758 CDS CP012958.1 1771174 1771485 1 + 312 Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives DNA replication cluster 1
fig|6666666.229934.peg.1759 CDS CP012958.1 1771513 1772016 1 + 504 Mercuric resistance operon regulatory protein - none -
fig|6666666.229934.peg.1760 CDS CP012958.1 1772899 1772093 -1 - 807 Mobile element protein - none -
fig|6666666.229934.peg.1761 CDS CP012958.1 1773069 1772896 -3 - 174 hypothetical protein - none -
fig|6666666.229934.peg.1762 CDS CP012958.1 1773268 1773137 -1 - 132 hypothetical protein - none -
fig|6666666.229934.peg.1763 CDS CP012958.1 1776171 1773340 -3 - 2832 Excinuclease ABC subunit A DNA repair, UvrABC system
fig|6666666.229934.peg.1764 CDS CP012958.1 1776341 1776820 2 + 480 Single-stranded DNA-binding protein DNA repair, bacterial;
DNA repair, bacterial RecFOR pathway
fig|6666666.229934.peg.1765 CDS CP012958.1 1776969 1778243 3 + 1275 putative site specific recombinase - none -
fig|6666666.229934.peg.1766 CDS CP012958.1 1778233 1779753 1 + 1521 putative enzyme; Integration, recombination (Phage or Prophage Related) - none -
fig|6666666.229934.peg.1767 CDS CP012958.1 1779756 1781795 3 + 2040 FIG00638563: hypothetical protein - none -
fig|6666666.229934.peg.1768 CDS CP012958.1 1781797 1782207 1 + 411 Transposase and inactivated derivatives - none -
fig|6666666.229934.peg.1769 CDS CP012958.1 1782325 1782462 1 + 138 hypothetical protein - none -
fig|6666666.229934.peg.1770 CDS CP012958.1 1784226 1784999 3 + 774 hypothetical protein - none -
fig|6666666.229934.peg.1771 CDS CP012958.1 1785441 1785043 -3 - 399 Predicted transcriptional regulators - none -
fig|6666666.229934.peg.1772 CDS CP012958.1 1789761 1788712 -3 - 1050 FIG00638478: hypothetical protein - none -
fig|6666666.229934.peg.1773 CDS CP012958.1 1790775 1789771 -3 - 1005 hypothetical protein - none -
fig|6666666.229934.peg.1774 CDS CP012958.1 1792359 1791505 -3 - 855 Methyl-directed repair DNA adenine methylase (EC 2.1.1.72) DNA repair, bacterial
fig|6666666.229934.peg.1775 CDS CP012958.1 1793450 1792362 -2 - 1089 3-dehydroquinate synthase (EC 4.2.3.4) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate);
Type IV pilus
fig|6666666.229934.peg.1776 CDS CP012958.1 1794001 1793474 -1 - 528 Shikimate kinase I (EC 2.7.1.71) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229934.peg.1777 CDS CP012958.1 1795624 1794215 -1 - 1410 Type IV pilus biogenesis protein PilQ; Competence protein E DNA uptake cluster;
Type IV pilus
fig|6666666.229934.peg.1778 CDS CP012958.1 1796036 1795644 -2 - 393 Type IV pilus biogenesis protein PilQ; Competence protein D DNA uptake cluster;
Type IV pilus
fig|6666666.229934.peg.1779 CDS CP012958.1 1796560 1796036 -1 - 525 Competence protein C; Chromosome segregation ATPases DNA uptake cluster
fig|6666666.229934.peg.1780 CDS CP012958.1 1797075 1796557 -3 - 519 Type IV pilus biogenesis protein PilN; Competence protein B DNA uptake cluster;
Type IV pilus
fig|6666666.229934.peg.1781 CDS CP012958.1 1797895 1797086 -1 - 810 Type IV pilus biogenesis protein PilM; Competence protein A DNA uptake cluster;
Type IV pilus
fig|6666666.229934.peg.1782 CDS CP012958.1 1798029 1800596 3 + 2568 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) DNA uptake cluster;
Peptidoglycan Biosynthesis;
Type IV pilus
fig|6666666.229934.peg.1783 CDS CP012958.1 1800691 1801536 1 + 846 Protein involved in catabolism of external DNA DNA processing cluster;
DNA uptake cluster
fig|6666666.229934.peg.1784 CDS CP012958.1 1801631 1803001 2 + 1371 Glutathione reductase (EC 1.8.1.7) Glutathione: Redox cycle
fig|6666666.229934.peg.1785 CDS CP012958.1 1803778 1803134 -1 - 645 Cyclic AMP receptor protein cAMP signaling in bacteria
fig|6666666.229934.peg.1786 CDS CP012958.1 1804034 1803816 -2 - 219 FIG00696234: hypothetical protein - none -
fig|6666666.229934.peg.1787 CDS CP012958.1 1804657 1804058 -1 - 600 Transcriptional regulator SlmA, TetR family - none -
fig|6666666.229934.peg.1788 CDS CP012958.1 1805112 1804657 -3 - 456 Deoxyuridine 5@1-triphosphate nucleotidohydrolase (EC 3.6.1.23) Housecleaning nucleoside triphosphate pyrophosphatases;
Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229934.peg.1789 CDS CP012958.1 1806380 1805181 -2 - 1200 Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) / Phosphopantothenoylcysteine synthetase (EC 6.3.2.5) Coenzyme A Biosynthesis;
Coenzyme A Biosynthesis
fig|6666666.229934.peg.1790 CDS CP012958.1 1806355 1806507 1 + 153 hypothetical protein - none -
fig|6666666.229934.peg.1791 CDS CP012958.1 1806558 1807217 3 + 660 DNA repair protein RadC DNA repair, bacterial
fig|6666666.229934.peg.1792 CDS CP012958.1 1807489 1807662 1 + 174 LSU ribosomal protein L28p Ribosome LSU bacterial
fig|6666666.229934.peg.1793 CDS CP012958.1 1807674 1807844 3 + 171 LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-independent Ribosome LSU bacterial;
Ribosome LSU bacterial
fig|6666666.229934.peg.1794 CDS CP012958.1 1807884 1808741 3 + 858 Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) DNA Repair Base Excision
fig|6666666.229934.peg.1795 CDS CP012958.1 1809796 1808744 -1 - 1053 COG0859: ADP-heptose:LPS heptosyltransferase - none -
fig|6666666.229934.peg.1796 CDS CP012958.1 1810828 1809806 -1 - 1023 COG0859: ADP-heptose:LPS heptosyltransferase - none -
fig|6666666.229934.peg.1797 CDS CP012958.1 1811521 1810829 -1 - 693 Beta-1,4-galactosyltransferase LOS core oligosaccharide biosynthesis
fig|6666666.229934.peg.1798 CDS CP012958.1 1811796 1811584 -3 - 213 LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-dependent Ribosome LSU bacterial;
Ribosome LSU bacterial
fig|6666666.229934.peg.1799 CDS CP012958.1 1812054 1812902 3 + 849 Lipooligosaccharide biosynthesis protein lex-1 (EC 2.-.-.-) - none -
fig|6666666.229934.peg.1800 CDS CP012958.1 1812911 1813915 2 + 1005 putative capsular polysaccharide synthesis protein - none -
fig|6666666.229934.peg.1801 CDS CP012958.1 1814785 1813922 -1 - 864 Involved in lipopolysaccharide biosynthesis - none -
fig|6666666.229934.peg.1802 CDS CP012958.1 1815172 1817211 1 + 2040 Helicase PriA essential for oriC/DnaA-independent DNA replication Conserved gene cluster associated with Met-tRNA formyltransferase
fig|6666666.229934.peg.1803 CDS CP012958.1 1817321 1818133 2 + 813 Cell division protein - none -
fig|6666666.229934.peg.1804 CDS CP012958.1 1818333 1818899 3 + 567 Probable Co/Zn/Cd efflux system membrane fusion protein Cobalt-zinc-cadmium resistance
fig|6666666.229934.peg.1805 CDS CP012958.1 1818925 1820121 1 + 1197 Probable Co/Zn/Cd efflux system membrane fusion protein Cobalt-zinc-cadmium resistance
fig|6666666.229934.peg.1806 CDS CP012958.1 1820135 1823233 2 + 3099 RND multidrug efflux transporter; Acriflavin resistance protein Multidrug Resistance Efflux Pumps
fig|6666666.229934.peg.1807 CDS CP012958.1 1823494 1824189 1 + 696 Orf2 - none -
fig|6666666.229934.peg.1808 CDS CP012958.1 1824842 1825789 2 + 948 Magnesium and cobalt transport protein CorA Magnesium transport
fig|6666666.229934.peg.1809 CDS CP012958.1 1825805 1826365 2 + 561 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) CBSS-630.2.peg.3360
fig|6666666.229934.peg.1810 CDS CP012958.1 1826390 1826683 2 + 294 COG1872 - none -
fig|6666666.229934.peg.1811 CDS CP012958.1 1826800 1827459 1 + 660 Oxygen-insensitive NAD(P)H nitroreductase (EC 1.-.-.-) / Dihydropteridine reductase (EC 1.5.1.34) - none -
fig|6666666.229934.peg.1812 CDS CP012958.1 1827524 1829497 2 + 1974 Phosphoglycerol transferase I (EC 2.7.8.20) Synthesis of osmoregulated periplasmic glucans
fig|6666666.229934.peg.1813 CDS CP012958.1 1830404 1829667 -2 - 738 COG1496: Uncharacterized conserved protein - none -
fig|6666666.229934.peg.1814 CDS CP012958.1 1831380 1830406 -3 - 975 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) RNA pseudouridine syntheses;
Ribosome biogenesis bacterial
fig|6666666.229934.peg.1815 CDS CP012958.1 1831487 1832275 2 + 789 Probable component of the lipoprotein assembly complex (forms a complex with YaeT, YfgL, and NlpB) Lipopolysaccharide assembly
fig|6666666.229934.peg.1816 CDS CP012958.1 1832886 1832311 -3 - 576 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) 5-FCL-like protein;
Folate Biosynthesis;
One-carbon metabolism by tetrahydropterines;
Serine-glyoxylate cycle
fig|6666666.229934.peg.1817 CDS CP012958.1 1833506 1833180 -2 - 327 Z-ring-associated protein ZapA Bacterial Cytoskeleton
fig|6666666.229934.peg.1818 CDS CP012958.1 1833665 1834213 2 + 549 FIG001590: Putative conserved exported protein precursor CBSS-87626.3.peg.3639
fig|6666666.229934.peg.1819 CDS CP012958.1 1834243 1835529 1 + 1287 Xaa-Pro aminopeptidase (EC 3.4.11.9) Aminopeptidases (EC 3.4.11.-);
CBSS-87626.3.peg.3639
fig|6666666.229934.peg.1820 CDS CP012958.1 1835839 1835684 -1 - 156 hypothetical protein - none -
fig|6666666.229934.peg.1821 CDS CP012958.1 1836025 1836273 1 + 249 SSU ribosomal protein S16p - none -
fig|6666666.229934.peg.1822 CDS CP012958.1 1836299 1836826 2 + 528 16S rRNA processing protein RimM Ribosome biogenesis bacterial
fig|6666666.229934.peg.1823 CDS CP012958.1 1836892 1837641 1 + 750 tRNA (Guanine37-N1) -methyltransferase (EC 2.1.1.31) RNA methylation;
Ribosome biogenesis bacterial;
tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229934.peg.1824 CDS CP012958.1 1837667 1838017 2 + 351 LSU ribosomal protein L19p Ribosome LSU bacterial
fig|6666666.229934.peg.1825 CDS CP012958.1 1838615 1838127 -2 - 489 Rod shape-determining protein MreD Bacterial Cell Division;
Bacterial Cytoskeleton;
CBSS-354.1.peg.2917
fig|6666666.229934.peg.1826 CDS CP012958.1 1839688 1838615 -1 - 1074 Rod shape-determining protein MreC Bacterial Cell Division;
Bacterial Cytoskeleton;
CBSS-354.1.peg.2917
fig|6666666.229934.peg.1827 CDS CP012958.1 1840813 1839758 -1 - 1056 Rod shape-determining protein MreB Bacterial Cell Division;
Bacterial Cytoskeleton
fig|6666666.229934.peg.1828 CDS CP012958.1 1841063 1843468 2 + 2406 3@1-to-5@1 exoribonuclease RNase R RNA processing and degradation, bacterial
fig|6666666.229934.peg.1829 CDS CP012958.1 1843465 1844202 1 + 738 23S rRNA (guanosine-2@1-O-) -methyltransferase rlmB (EC 2.1.1.-) RNA methylation
fig|6666666.229934.peg.1830 CDS CP012958.1 1844345 1844515 2 + 171 hypothetical protein - none -
fig|6666666.229934.peg.1831 CDS CP012958.1 1844535 1845977 3 + 1443 Glycerol-3-phosphate transporter - none -
fig|6666666.229934.peg.1832 CDS CP012958.1 1846211 1847293 2 + 1083 Glycerophosphoryl diester phosphodiesterase, periplasmic (EC 3.1.4.46) - none -
fig|6666666.229934.peg.1833 CDS CP012958.1 1848468 1847350 -3 - 1119 Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake CBSS-272943.3.peg.1367;
Conserved gene cluster associated with Met-tRNA formyltransferase;
YrdC-YciO-Sua5 protein family
fig|6666666.229934.peg.1834 CDS CP012958.1 1849137 1848688 -3 - 450 LSU ribosomal protein L9p Primosomal replication protein N clusters with ribosomal proteins;
Ribosome LSU bacterial
fig|6666666.229934.peg.1835 CDS CP012958.1 1849383 1849153 -3 - 231 SSU ribosomal protein S18p @ SSU ribosomal protein S18p, zinc-independent Primosomal replication protein N clusters with ribosomal proteins
fig|6666666.229934.peg.1836 CDS CP012958.1 1849722 1849396 -3 - 327 Primosomal replication protein N Primosomal replication protein N clusters with ribosomal proteins
fig|6666666.229934.peg.1837 CDS CP012958.1 1850086 1849709 -1 - 378 SSU ribosomal protein S6p Primosomal replication protein N clusters with ribosomal proteins
fig|6666666.229934.peg.1838 CDS CP012958.1 1850861 1850238 -2 - 624 SOS-response repressor and protease LexA (EC 3.4.21.88) DNA repair, bacterial
fig|6666666.229934.peg.1839 CDS CP012958.1 1851069 1853507 3 + 2439 Glycerol-3-phosphate acyltransferase (EC 2.3.1.15) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229934.peg.1840 CDS CP012958.1 1855392 1853548 -3 - 1845 Lipid A export ATP-binding/permease protein MsbA - none -
fig|6666666.229934.peg.1841 CDS CP012958.1 1856397 1855480 -3 - 918 transcriptional regulator MtrA - none -
fig|6666666.229934.peg.1842 CDS CP012958.1 1856501 1856842 2 + 342 Possible carboxymuconolactone decarboxylase family protein (EC 4.1.1.44) - none -
fig|6666666.229934.peg.1843 CDS CP012958.1 1857982 1856939 -1 - 1044 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) LOS core oligosaccharide biosynthesis
fig|6666666.229934.peg.1844 CDS CP012958.1 1858071 1858796 3 + 726 3-deoxy-D-manno-octulosonic acid kinase (EC 2.7.1.-) - none -
fig|6666666.229934.peg.1845 CDS CP012958.1 1859343 1858858 -3 - 486 Phosphopantetheine adenylyltransferase (EC 2.7.7.3) CBSS-266117.6.peg.1260;
CBSS-269801.1.peg.1715;
Coenzyme A Biosynthesis
fig|6666666.229934.peg.1846 CDS CP012958.1 1860627 1859344 -3 - 1284 3-deoxy-D-manno-octulosonic-acid transferase (EC 2.-.-.-) KDO2-Lipid A biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.229934.peg.1847 CDS CP012958.1 1860726 1861487 3 + 762 Lipopolysaccharide biosynthesis glycosyltransferase - none -
fig|6666666.229934.peg.1848 CDS CP012958.1 1861760 1861939 2 + 180 hypothetical protein - none -
fig|6666666.229934.peg.1849 CDS CP012958.1 1863353 1862184 -2 - 1170 Lipoprotein NlpD Stationary phase repair cluster
fig|6666666.229934.peg.1850 CDS CP012958.1 1863561 1863370 -3 - 192 Cobalamin biosynthesis protein CobN and related Mg-chelatases - none -
fig|6666666.229934.peg.1851 CDS CP012958.1 1864151 1863576 -2 - 576 FIG139438: lipoprotein B Stationary phase repair cluster
fig|6666666.229934.peg.1852 CDS CP012958.1 1864919 1864179 -2 - 741 5-nucleotidase SurE (EC 3.1.3.5) @ Exopolyphosphatase (EC 3.6.1.11) Housecleaning nucleoside triphosphate pyrophosphatases;
Phosphate metabolism;
Polyphosphate;
Stationary phase repair cluster
fig|6666666.229934.peg.1853 CDS CP012958.1 1865962 1864952 -1 - 1011 tRNA pseudouridine 13 synthase (EC 4.2.1.-) Stationary phase repair cluster;
tRNA modification Archaea;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229934.peg.1854 CDS CP012958.1 1866438 1865959 -3 - 480 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis;
Stationary phase repair cluster
fig|6666666.229934.peg.1855 CDS CP012958.1 1867130 1866435 -2 - 696 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC 2.7.7.60) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis;
Stationary phase repair cluster
fig|6666666.229934.peg.1856 CDS CP012958.1 1867408 1867130 -1 - 279 Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage Bacterial Cell Division;
Bacterial Cytoskeleton;
Cell division-ribosomal stress proteins cluster;
Stationary phase repair cluster
fig|6666666.229934.peg.1857 CDS CP012958.1 1867560 1868234 3 + 675 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) Conserved gene cluster associated with Met-tRNA formyltransferase;
Pentose phosphate pathway;
Riboflavin synthesis cluster
fig|6666666.229934.peg.1858 CDS CP012958.1 1868237 1868911 2 + 675 Phosphoglycolate phosphatase (EC 3.1.3.18) 2-phosphoglycolate salvage;
Glycolate, glyoxylate interconversions
fig|6666666.229934.peg.1859 CDS CP012958.1 1869191 1869841 2 + 651 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) Bacterial Cell Division
fig|6666666.229934.peg.1860 CDS CP012958.1 1869850 1870785 1 + 936 Cell division protein FtsX Bacterial Cell Division
fig|6666666.229934.peg.1861 CDS CP012958.1 1871335 1870919 -1 - 417 Threonine dehydratase biosynthetic (EC 4.3.1.19) - none -
fig|6666666.229934.peg.1862 CDS CP012958.1 1871793 1871386 -3 - 408 Threonine dehydratase biosynthetic (EC 4.3.1.19) - none -
fig|6666666.229934.peg.1863 CDS CP012958.1 1872703 1871867 -1 - 837 Acetolactate synthase large subunit (EC 2.2.1.6) - none -
fig|6666666.229934.peg.1864 CDS CP012958.1 1873038 1873856 3 + 819 Cof protein, HD superfamily hydrolase Housecleaning nucleoside triphosphate pyrophosphatases
fig|6666666.229934.peg.1865 CDS CP012958.1 1874817 1873894 -3 - 924 Lysophospholipase L2 (EC 3.1.1.5) Triacylglycerol metabolism
fig|6666666.229934.peg.1866 CDS CP012958.1 1875952 1874810 -1 - 1143 O-antigen ligase LOS core oligosaccharide biosynthesis
fig|6666666.229934.peg.1867 CDS CP012958.1 1875986 1876147 2 + 162 hypothetical protein - none -
fig|6666666.229934.peg.1868 CDS CP012958.1 1877239 1876160 -1 - 1080 Fructose-bisphosphate aldolase class II (EC 4.1.2.13) Glycolysis and Gluconeogenesis
fig|6666666.229934.peg.1869 CDS CP012958.1 1878467 1877304 -2 - 1164 Phosphoglycerate kinase (EC 2.7.2.3) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis
fig|6666666.229934.peg.1870 CDS CP012958.1 1879275 1878580 -3 - 696 Probable ribonuclease HI0526 precursor - none -
fig|6666666.229934.peg.1871 CDS CP012958.1 1879382 1879603 2 + 222 4Fe-4S ferredoxin, iron-sulfur binding - none -
fig|6666666.229934.peg.1872 CDS CP012958.1 1880745 1879669 -3 - 1077 hypothetical tRNA/rRNA methyltransferase yfiF [EC:2.1.1.-] RNA methylation;
tRNA modification Bacteria
fig|6666666.229934.peg.1873 CDS CP012958.1 1880931 1882298 3 + 1368 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229934.peg.1874 CDS CP012958.1 1883144 1882338 -2 - 807 Mobile element protein - none -
fig|6666666.229934.peg.1875 CDS CP012958.1 1883314 1883141 -1 - 174 hypothetical protein - none -
fig|6666666.229934.peg.1876 CDS CP012958.1 1883513 1883382 -2 - 132 hypothetical protein - none -
fig|6666666.229934.peg.1877 CDS CP012958.1 1885428 1883956 -3 - 1473 Xylulose kinase (EC 2.7.1.17) Xylose utilization
fig|6666666.229934.peg.1878 CDS CP012958.1 1886797 1885478 -1 - 1320 Xylose isomerase (EC 5.3.1.5) Xylose utilization
fig|6666666.229934.peg.1879 CDS CP012958.1 1887055 1888053 1 + 999 Xylose ABC transporter, periplasmic xylose-binding protein XylF Xylose utilization
fig|6666666.229934.peg.1880 CDS CP012958.1 1888113 1889624 3 + 1512 D-xylose transport ATP-binding protein XylG Xylose utilization
fig|6666666.229934.peg.1881 CDS CP012958.1 1889628 1890755 3 + 1128 Xylose ABC transporter, permease protein XylH Xylose utilization
fig|6666666.229934.peg.1882 CDS CP012958.1 1890844 1892040 1 + 1197 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229934.peg.1883 CDS CP012958.1 1892093 1893439 2 + 1347 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229934.peg.1884 CDS CP012958.1 1893565 1893443 -1 - 123 hypothetical protein - none -
fig|6666666.229934.peg.1885 CDS CP012958.1 1893554 1894726 2 + 1173 Xylose activator XylR (AraC family) Xylose utilization
fig|6666666.229934.peg.1886 CDS CP012958.1 1896210 1894753 -3 - 1458 Permeases of the major facilitator superfamily - none -
fig|6666666.229934.peg.1887 CDS CP012958.1 1896347 1896231 -2 - 117 hypothetical protein - none -
fig|6666666.229934.peg.1888 CDS CP012958.1 1896496 1897494 1 + 999 PTS system, mannose-specific IIA component (EC 2.7.1.69) / PTS system, mannose-specific IIB component (EC 2.7.1.69) Mannose Metabolism;
Mannose Metabolism;
Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229934.peg.1889 CDS CP012958.1 1897506 1898309 3 + 804 PTS system, mannose-specific IIC component - none -
fig|6666666.229934.peg.1890 CDS CP012958.1 1898325 1899161 3 + 837 PTS system, mannose-specific IID component - none -
fig|6666666.229934.peg.1891 CDS CP012958.1 1900946 1899342 -2 - 1605 Type I restriction-modification system, DNA-methyltransferase subunit M (EC 2.1.1.72) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229934.peg.1892 CDS CP012958.1 1902177 1901047 -3 - 1131 Type I restriction-modification system, specificity subunit S (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229934.peg.1893 CDS CP012958.1 1902661 1902386 -1 - 276 Putative DNA-binding protein in cluster with Type I restriction-modification system Restriction-Modification System
fig|6666666.229934.peg.1894 CDS CP012958.1 1903492 1902710 -1 - 783 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229934.peg.1895 CDS CP012958.1 1905686 1903557 -2 - 2130 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229934.peg.1896 CDS CP012958.1 1905987 1905835 -3 - 153 hypothetical protein - none -
fig|6666666.229934.peg.1897 CDS CP012958.1 1905992 1907038 2 + 1047 ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1) Polyamine Metabolism
fig|6666666.229934.peg.1898 CDS CP012958.1 1907527 1907099 -1 - 429 ATP synthase epsilon chain (EC 3.6.3.14) - none -
fig|6666666.229934.peg.1899 CDS CP012958.1 1908942 1907569 -3 - 1374 ATP synthase beta chain (EC 3.6.3.14) - none -
fig|6666666.229934.peg.1900 CDS CP012958.1 1909828 1908959 -1 - 870 ATP synthase gamma chain (EC 3.6.3.14) - none -
fig|6666666.229934.peg.1901 CDS CP012958.1 1911385 1909844 -1 - 1542 ATP synthase alpha chain (EC 3.6.3.14) - none -
fig|6666666.229934.peg.1902 CDS CP012958.1 1911946 1911398 -1 - 549 ATP synthase delta chain (EC 3.6.3.14) - none -
fig|6666666.229934.peg.1903 CDS CP012958.1 1912430 1911960 -2 - 471 ATP synthase F0 sector subunit b - none -
fig|6666666.229934.peg.1904 CDS CP012958.1 1912734 1912480 -3 - 255 ATP synthase F0 sector subunit c (EC 3.6.3.14) - none -
fig|6666666.229934.peg.1905 CDS CP012958.1 1913576 1912788 -2 - 789 ATP synthase F0 sector subunit a - none -
fig|6666666.229934.peg.1906 CDS CP012958.1 1913978 1913601 -2 - 378 FIG048548: ATP synthase protein I2 - none -
fig|6666666.229934.peg.1907 CDS CP012958.1 1914773 1914090 -2 - 684 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB Cell Division Subsystem including YidCD;
RNA methylation;
RNA modification and chromosome partitioning cluster
fig|6666666.229934.peg.1908 CDS CP012958.1 1915128 1914766 -3 - 363 Redox-sensing transcriptional regulator QorR NADPH:quinone oxidoreductase 2
fig|6666666.229934.peg.1909 CDS CP012958.1 1915379 1916137 2 + 759 NADPH:quinone oxidoreductase 2 NADPH:quinone oxidoreductase 2
fig|6666666.229934.peg.1910 CDS CP012958.1 1918298 1916409 -2 - 1890 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA Cell Division Subsystem including YidCD;
RNA modification and chromosome partitioning cluster;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229934.peg.1911 CDS CP012958.1 1919184 1918741 -3 - 444 Flavoprotein MioC Flavodoxin
fig|6666666.229934.peg.1912 CDS CP012958.1 1919459 1919241 -2 - 219 FIG074102: hypothetical protein - none -
fig|6666666.229934.peg.1913 CDS CP012958.1 1919655 1920668 3 + 1014 Fructose-1,6-bisphosphatase, GlpX type (EC 3.1.3.11) Glycolysis and Gluconeogenesis
fig|6666666.229934.peg.1914 CDS CP012958.1 1922106 1921309 -3 - 798 Serine acetyltransferase (EC 2.3.1.30) Cysteine Biosynthesis;
Methionine Biosynthesis
fig|6666666.229934.peg.1915 CDS CP012958.1 1923122 1922109 -2 - 1014 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) Glutaredoxin 3 containing cluster;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229934.peg.1916 CDS CP012958.1 1923712 1923200 -1 - 513 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) Glutaredoxin 3 containing cluster
fig|6666666.229934.peg.1917 CDS CP012958.1 1924150 1923728 -1 - 423 FIG136845: Rhodanese-related sulfurtransferase Glutaredoxin 3 containing cluster
fig|6666666.229934.peg.1918 CDS CP012958.1 1924496 1925818 2 + 1323 Anaerobic C4-dicarboxylate membrane transporter DcuA - none -
fig|6666666.229934.peg.1919 CDS CP012958.1 1925986 1927734 1 + 1749 Transport ATP-binding protein CydD Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229934.peg.1920 CDS CP012958.1 1927751 1929385 2 + 1635 ABC transporter ATP-binding protein - none -
fig|6666666.229934.peg.1921 CDS CP012958.1 1930117 1929497 -1 - 621 Unsaturated fatty acid biosythesis repressor FabR, TetR family - none -
fig|6666666.229934.peg.1922 CDS CP012958.1 1931028 1930129 -3 - 900 Hydrogen peroxide-inducible genes activator LysR-family proteins in Escherichia coli;
LysR-family proteins in Salmonella enterica Typhimurium;
Oxidative stress;
Thioredoxin-disulfide reductase
fig|6666666.229934.peg.1923 CDS CP012958.1 1931187 1931915 3 + 729 Peroxiredoxin family protein/glutaredoxin - none -
fig|6666666.229934.peg.1924 CDS CP012958.1 1932190 1931975 -1 - 216 Protein SlyX - none -
fig|6666666.229934.peg.1925 CDS CP012958.1 1932285 1933010 3 + 726 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase;
Potassium homeostasis
fig|6666666.229934.peg.1926 CDS CP012958.1 1933090 1933758 1 + 669 YheO-like PAS domain - none -
fig|6666666.229934.peg.1927 CDS CP012958.1 1933762 1934139 1 + 378 tRNA 5-methylaminomethyl-2-thiouridine synthase TusD CBSS-326442.4.peg.1852;
Sulfite reduction-associated complex DsrMKJOP and co-clustering genes;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.229934.peg.1928 CDS CP012958.1 1934136 1934498 3 + 363 tRNA 5-methylaminomethyl-2-thiouridine synthase TusC CBSS-326442.4.peg.1852;
Sulfite reduction-associated complex DsrMKJOP and co-clustering genes;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.229934.peg.1929 CDS CP012958.1 1934501 1934788 2 + 288 tRNA 5-methylaminomethyl-2-thiouridine synthase TusB Sulfite reduction-associated complex DsrMKJOP and co-clustering genes;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.229934.peg.1930 CDS CP012958.1 1935560 1934793 -2 - 768 ABC-type polar amino acid transport system, ATPase component CBSS-326442.4.peg.1852
fig|6666666.229934.peg.1931 CDS CP012958.1 1936253 1935570 -2 - 684 ABC-type amino acid transport system, permease component - none -
fig|6666666.229934.peg.1932 CDS CP012958.1 1937055 1936276 -3 - 780 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain - none -
fig|6666666.229934.peg.1933 CDS CP012958.1 1938476 1937181 -2 - 1296 Glycine/D-amino acid oxidases (deaminating) - none -
fig|6666666.229934.peg.1934 CDS CP012958.1 1939965 1938601 -3 - 1365 lipoprotein, putative - none -
fig|6666666.229934.peg.1935 CDS CP012958.1 1942824 1941910 -3 - 915 N-acetylmuramic acid 6-phosphate etherase - none -
fig|6666666.229934.peg.1936 CDS CP012958.1 1943951 1942821 -2 - 1131 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) Recycling of Peptidoglycan Amino Sugars
fig|6666666.229934.peg.1937 CDS CP012958.1 1944037 1945407 1 + 1371 N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23) / Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157) Peptidoglycan Biosynthesis;
Peptidoglycan Biosynthesis;
Sialic Acid Metabolism;
Sialic Acid Metabolism;
Transcription repair cluster;
Transcription repair cluster;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229934.peg.1938 CDS CP012958.1 1945441 1945572 1 + 132 hypothetical protein - none -
fig|6666666.229934.peg.1939 CDS CP012958.1 1946652 1945561 -3 - 1092 Putative exported protein precursor - none -
fig|6666666.229934.peg.1940 CDS CP012958.1 1947539 1946790 -2 - 750 Deoxyribose operon repressor, DeoR family Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.229934.peg.1941 CDS CP012958.1 1948238 1947567 -2 - 672 Deoxyribose-phosphate aldolase (EC 4.1.2.4) Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.229934.peg.1942 CDS CP012958.1 1948899 1948540 -3 - 360 Integrase - none -
fig|6666666.229934.peg.1943 CDS CP012958.1 1949929 1949699 -1 - 231 hypothetical protein - none -
fig|6666666.229934.peg.1944 CDS CP012958.1 1952661 1949926 -3 - 2736 Putative uncharacterized protein ydbH - none -
fig|6666666.229934.peg.1945 CDS CP012958.1 1953384 1952767 -3 - 618 Multiple antibiotic resistance protein marC - none -
fig|6666666.229934.peg.1946 CDS CP012958.1 1953465 1953716 3 + 252 Glutathione-regulated potassium-efflux system ATP-binding protein Potassium homeostasis
fig|6666666.229934.peg.1947 CDS CP012958.1 1954276 1954121 -1 - 156 hypothetical protein - none -
fig|6666666.229934.peg.1948 CDS CP012958.1 1955187 1954951 -3 - 237 FIG00699267: hypothetical protein - none -
fig|6666666.229934.peg.1949 CDS CP012958.1 1955689 1955381 -1 - 309 filamentation induced by cAMP protein Fic-like protein - none -
fig|6666666.229934.peg.1950 CDS CP012958.1 1955981 1955742 -2 - 240 hypothetical protein - none -
fig|6666666.229934.peg.1951 CDS CP012958.1 1956120 1955974 -3 - 147 Chromosome (plasmid) partitioning protein ParA Bacterial Cell Division;
Bacterial Cytoskeleton;
Cell Division Subsystem including YidCD;
RNA modification and chromosome partitioning cluster
fig|6666666.229934.peg.1952 CDS CP012958.1 1956381 1956548 3 + 168 hypothetical protein - none -
fig|6666666.229934.peg.1953 CDS CP012958.1 1956545 1956829 2 + 285 hypothetical protein - none -
fig|6666666.229934.peg.1954 CDS CP012958.1 1958217 1957780 -3 - 438 hypothetical protein - none -
fig|6666666.229934.peg.1955 CDS CP012958.1 1960002 1958263 -3 - 1740 Coupling protein VirD4, ATPase required for T-DNA transfer - none -
fig|6666666.229934.peg.1956 CDS CP012958.1 1961033 1960002 -2 - 1032 ATPase provides energy for both assembly of type IV secretion complex and secretion of T-DNA complex (VirB11) - none -
fig|6666666.229934.peg.1957 CDS CP012958.1 1962155 1961046 -2 - 1110 Inner membrane protein forms channel for type IV secretion of T-DNA complex (VirB10) - none -
fig|6666666.229934.peg.1958 CDS CP012958.1 1963022 1962165 -2 - 858 Outer membrane and periplasm component of type IV secretion of T-DNA complex, has secretin-like domain, VirB9 - none -
fig|6666666.229934.peg.1959 CDS CP012958.1 1963710 1963024 -3 - 687 Inner membrane protein forms channel for type IV secretion of T-DNA complex, VirB8 - none -
fig|6666666.229934.peg.1960 CDS CP012958.1 1963853 1963707 -2 - 147 hypothetical protein - none -
fig|6666666.229934.peg.1961 CDS CP012958.1 1964923 1963922 -1 - 1002 Inner membrane protein of type IV secretion of T-DNA complex, VirB6 - none -
fig|6666666.229934.peg.1962 CDS CP012958.1 1965160 1964933 -1 - 228 hypothetical protein - none -
fig|6666666.229934.peg.1963 CDS CP012958.1 1965905 1965174 -2 - 732 Minor pilin of type IV secretion complex, VirB5 - none -
fig|6666666.229934.peg.1964 CDS CP012958.1 1966998 1965916 -3 - 1083 ATPase provides energy for both assembly of type IV secretion complex and secretion of T-DNA complex (VirB4) - none -
fig|6666666.229934.peg.1965 CDS CP012958.1 1966979 1968247 2 + 1269 Glutathione-regulated potassium-efflux system ATP-binding protein Potassium homeostasis
fig|6666666.229934.peg.1966 CDS CP012958.1 1968219 1968683 3 + 465 Glutathione-regulated potassium-efflux system ATP-binding protein Potassium homeostasis
fig|6666666.229934.peg.1967 CDS CP012958.1 1968831 1969889 3 + 1059 RecA protein DNA repair, bacterial;
DNA repair, bacterial RecFOR pathway;
DNA repair system including RecA, MutS and a hypothetical protein;
RecA and RecX
fig|6666666.229934.peg.1968 CDS CP012958.1 1969971 1970429 3 + 459 Regulatory protein RecX DNA repair system including RecA, MutS and a hypothetical protein;
RecA and RecX
fig|6666666.229934.peg.1969 CDS CP012958.1 1970506 1970895 1 + 390 Endoribonuclease L-PSP - none -
fig|6666666.229934.peg.1970 CDS CP012958.1 1972964 1970967 -2 - 1998 Transketolase (EC 2.2.1.1) Pentose phosphate pathway
fig|6666666.229934.peg.1971 CDS CP012958.1 1974011 1973097 -2 - 915 Transaldolase (EC 2.2.1.2) Fructose utilization;
Pentose phosphate pathway
fig|6666666.229934.peg.1973 CDS CP012958.1 1980076 1980192 1 + 117 hypothetical protein - none -
fig|6666666.229934.peg.1974 CDS CP012958.1 1981336 1980755 -1 - 582 Molybdopterin biosynthesis molybdochelatase MogA Molybdenum cofactor biosynthesis
fig|6666666.229934.peg.1975 CDS CP012958.1 1982355 1981426 -3 - 930 Phosphatidate cytidylyltransferase (EC 2.7.7.41) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229934.peg.1976 CDS CP012958.1 1982987 1982355 -2 - 633 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229934.peg.1977 CDS CP012958.1 1983606 1982998 -3 - 609 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229934.peg.1978 CDS CP012958.1 1985485 1983617 -1 - 1869 Putative transport protein - none -
fig|6666666.229934.peg.1979 CDS CP012958.1 1986124 1985525 -1 - 600 Ribonuclease HII (EC 3.1.26.4) Conserved gene cluster associated with Met-tRNA formyltransferase;
Ribonuclease H
fig|6666666.229934.peg.1980 CDS CP012958.1 1987301 1986117 -2 - 1185 Lipid-A-disaccharide synthase (EC 2.4.1.182) KDO2-Lipid A biosynthesis;
Llipid A biosynthesis cluster
fig|6666666.229934.peg.1981 CDS CP012958.1 1988174 1987386 -2 - 789 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase (EC 2.3.1.129) KDO2-Lipid A biosynthesis;
Llipid A biosynthesis cluster
fig|6666666.229934.peg.1982 CDS CP012958.1 1988605 1988195 -1 - 411 3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabZ form (EC 4.2.1.59) Fatty Acid Biosynthesis FASII;
Llipid A biosynthesis cluster
fig|6666666.229934.peg.1983 CDS CP012958.1 1989764 1988742 -2 - 1023 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC 2.3.1.191) - none -
fig|6666666.229934.peg.1984 CDS CP012958.1 1990339 1989764 -1 - 576 Outer membrane chaperone Skp (OmpH) precursor @ Outer membrane protein H precursor Lipopolysaccharide assembly;
Llipid A biosynthesis cluster;
Periplasmic Stress Response
fig|6666666.229934.peg.1985 CDS CP012958.1 1992853 1990442 -1 - 2412 Outer membrane protein assembly factor YaeT precursor Lipopolysaccharide assembly;
Llipid A biosynthesis cluster
fig|6666666.229934.peg.1986 CDS CP012958.1 1994206 1992872 -1 - 1335 Membrane-associated zinc metalloprotease - none -
fig|6666666.229934.peg.1987 CDS CP012958.1 1995084 1994215 -3 - 870 Phosphatidate cytidylyltransferase (EC 2.7.7.41) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229934.peg.1988 CDS CP012958.1 1995818 1995099 -2 - 720 Undecaprenyl diphosphate synthase (EC 2.5.1.31) CBSS-83331.1.peg.3039;
Isoprenoid Biosynthesis;
Isoprenoinds for Quinones;
Polyprenyl Diphosphate Biosynthesis
fig|6666666.229934.peg.1989 CDS CP012958.1 1997123 1995840 -2 - 1284 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.267) CBSS-83331.1.peg.3039;
Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.229934.peg.1990 CDS CP012958.1 1997709 1997152 -3 - 558 Ribosome recycling factor Ribosome recycling related cluster;
Translation termination factors bacterial
fig|6666666.229934.peg.1991 CDS CP012958.1 1997866 1997723 -1 - 144 hypothetical protein - none -
fig|6666666.229934.peg.1992 CDS CP012958.1 1998647 1997934 -2 - 714 Uridine monophosphate kinase (EC 2.7.4.22) CBSS-312309.3.peg.1965;
Ribosome recycling related cluster
fig|6666666.229934.peg.1993 CDS CP012958.1 1998705 1998836 3 + 132 hypothetical protein - none -
fig|6666666.229934.peg.1994 CDS CP012958.1 2000462 1998804 -2 - 1659 Mediator of hyperadherence YidE - none -
fig|6666666.229934.peg.1995 CDS CP012958.1 2000586 2002403 3 + 1818 ABC transporter ATP-binding protein - none -
fig|6666666.229934.peg.1996 CDS CP012958.1 2005445 2002992 -2 - 2454 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229934.peg.1997 CDS CP012958.1 2005719 2005438 -3 - 282 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229934.peg.1998 CDS CP012958.1 2006818 2006063 -1 - 756 Glycerol-3-phosphate regulon repressor GlpR - none -
fig|6666666.229934.peg.1999 CDS CP012958.1 2007755 2006880 -2 - 876 GlpG protein (membrane protein of glp regulon) - none -
fig|6666666.229934.peg.2000 CDS CP012958.1 2007798 2008112 3 + 315 Uncharacterized protein PM1437 - none -
fig|6666666.229934.peg.2001 CDS CP012958.1 2008450 2008124 -1 - 327 Thiosulfate sulfurtransferase GlpE (EC 2.8.1.1) Single-Rhodanese-domain proteins
fig|6666666.229934.peg.2002 CDS CP012958.1 2009010 2008462 -3 - 549 FIG00903983: hypothetical protein - none -
fig|6666666.229934.peg.2003 CDS CP012958.1 2010895 2009135 -1 - 1761 DNA recombination protein RmuC DNA repair, bacterial
fig|6666666.229934.peg.2004 CDS CP012958.1 2010898 2011446 1 + 549 Similar to C-terminal Zn-finger domain of DNA topoisomerase I Conserved gene cluster associated with Met-tRNA formyltransferase;
DNA topoisomerases, Type I, ATP-independent
fig|6666666.229934.peg.2005 CDS CP012958.1 2011451 2012002 2 + 552 TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA - none -
fig|6666666.229934.peg.2006 CDS CP012958.1 2012006 2012806 2 + 801 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) Chorismate Synthesis;
Cluster containing Alanyl-tRNA synthetase;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229934.peg.2007 CDS CP012958.1 2013682 2012801 -1 - 882 Protein rarD - none -
fig|6666666.229934.peg.2008 CDS CP012958.1 2013900 2013715 -3 - 186 HTH-type transcriptional regulator IlvY Alanine biosynthesis;
LysR-family proteins in Escherichia coli;
LysR-family proteins in Salmonella enterica Typhimurium
fig|6666666.229934.peg.2009 CDS CP012958.1 2014541 2014840 2 + 300 Ketol-acid reductoisomerase (EC 1.1.1.86) Coenzyme A Biosynthesis
fig|6666666.229934.peg.2010 CDS CP012958.1 2015299 2015436 1 + 138 SSU ribosomal protein S12p (S23e) Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Ribosomal protein S12p Asp methylthiotransferase
fig|6666666.229934.peg.2011 CDS CP012958.1 2015589 2016059 3 + 471 SSU ribosomal protein S7p (S5e) Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins)
fig|6666666.229934.peg.2012 CDS CP012958.1 2016174 2018276 3 + 2103 Translation elongation factor G Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Translation elongation factor G family;
Translation elongation factors bacterial;
Universal GTPases
fig|6666666.229934.peg.2013 CDS CP012958.1 2018340 2019524 3 + 1185 Translation elongation factor Tu Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Translation elongation factors bacterial;
Universal GTPases
fig|6666666.229934.peg.2014 CDS CP012958.1 2020920 2021447 3 + 528 DNA transformation protein TfoX CBSS-83333.1.peg.946;
Orphan regulatory proteins
fig|6666666.229934.peg.2015 CDS CP012958.1 2022362 2021514 -2 - 849 RNA polymerase sigma factor RpoH Heat shock dnaK gene cluster extended;
Transcription initiation, bacterial sigma factors
fig|6666666.229934.peg.2016 CDS CP012958.1 2022861 2022547 -3 - 315 Uncharacterized protein conserved in bacteria - none -
fig|6666666.229934.peg.2017 CDS CP012958.1 2023902 2022877 -3 - 1026 UDP-N-acetylenolpyruvoylglucosamine reductase (EC 1.1.1.158) Peptidoglycan Biosynthesis;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229934.peg.2018 CDS CP012958.1 2025620 2023917 -2 - 1704 Nitrate/nitrite sensor protein (EC 2.7.3.-) - none -
fig|6666666.229934.peg.2019 CDS CP012958.1 2025666 2025830 3 + 165 hypothetical protein - none -
fig|6666666.229934.peg.2020 CDS CP012958.1 2025896 2026180 2 + 285 Periplasmic nitrate reductase component NapD - none -
fig|6666666.229934.peg.2021 CDS CP012958.1 2026214 2028700 2 + 2487 Periplasmic nitrate reductase precursor (EC 1.7.99.4) - none -
fig|6666666.229934.peg.2022 CDS CP012958.1 2028748 2029587 1 + 840 Ferredoxin-type protein NapG (periplasmic nitrate reductase) - none -
fig|6666666.229934.peg.2023 CDS CP012958.1 2029587 2030468 3 + 882 Polyferredoxin NapH (periplasmic nitrate reductase) - none -
fig|6666666.229934.peg.2024 CDS CP012958.1 2030506 2030955 1 + 450 Nitrate reductase cytochrome c550-type subunit - none -
fig|6666666.229934.peg.2025 CDS CP012958.1 2030969 2031604 2 + 636 Cytochrome c-type protein NapC - none -
fig|6666666.229934.peg.2026 CDS CP012958.1 2033585 2031690 -2 - 1896 Glutathionylspermidine synthase (EC 6.3.1.8) / Glutathionylspermidine amidohydrolase (EC 3.5.1.78) Glutathionylspermidine and Trypanothione;
Glutathionylspermidine and Trypanothione
fig|6666666.229934.peg.2027 CDS CP012958.1 2034746 2033703 -2 - 1044 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) LOS core oligosaccharide biosynthesis
fig|6666666.229934.peg.2028 CDS CP012958.1 2035893 2034766 -3 - 1128 Fic family protein - none -
fig|6666666.229934.peg.2029 CDS CP012958.1 2036989 2036063 -1 - 927 ADP-L-glycero-D-manno-heptose-6-epimerase (EC 5.1.3.20) LOS core oligosaccharide biosynthesis
fig|6666666.229934.peg.2030 CDS CP012958.1 2037011 2037130 2 + 120 hypothetical protein - none -
fig|6666666.229934.peg.2031 CDS CP012958.1 2037268 2038044 1 + 777 Protein HI0205 precursor - none -
fig|6666666.229934.peg.2032 CDS CP012958.1 2038071 2039885 3 + 1815 5@1-nucleotidase (EC 3.1.3.5); NAD pyrophosphatase, periplasmic (EC 3.6.1.22) Purine conversions;
pyrimidine conversions
fig|6666666.229934.peg.2033 CDS CP012958.1 2040338 2039991 -2 - 348 hypothetical protein - none -
fig|6666666.229934.peg.2034 CDS CP012958.1 2040710 2040588 -2 - 123 hypothetical protein - none -
fig|6666666.229934.peg.2035 CDS CP012958.1 2043526 2040725 -1 - 2802 DNA polymerase I (EC 2.7.7.7) DNA Repair Base Excision
fig|6666666.229934.peg.2036 CDS CP012958.1 2043743 2044306 2 + 564 Outer membrane protein 18/16 - none -
fig|6666666.229934.peg.2037 CDS CP012958.1 2044410 2044640 3 + 231 FIG00696102: hypothetical protein - none -
fig|6666666.229934.peg.2038 CDS CP012958.1 2044650 2046665 3 + 2016 ATP-dependent DNA helicase Rep DNA repair, bacterial UvrD and related helicases
fig|6666666.229934.peg.2039 CDS CP012958.1 2047561 2047181 -1 - 381 FIG00782409: hypothetical protein - none -
fig|6666666.229934.peg.2040 CDS CP012958.1 2047690 2048292 1 + 603 Putative phosphatase YqaB 2-phosphoglycolate salvage
fig|6666666.229934.peg.2041 CDS CP012958.1 2048292 2048897 3 + 606 Galactoside O-acetyltransferase (EC 2.3.1.18) Lactose utilization
fig|6666666.229934.peg.2042 CDS CP012958.1 2048900 2049385 2 + 486 Putative membrane protein - none -
fig|6666666.229934.peg.2043 CDS CP012958.1 2049599 2050105 2 + 507 S-ribosylhomocysteine lyase (EC 4.4.1.21) / Autoinducer-2 production protein LuxS Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon);
Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229934.peg.2044 CDS CP012958.1 2050275 2050427 3 + 153 hypothetical protein - none -
fig|6666666.229934.peg.2045 CDS CP012958.1 2051083 2050424 -1 - 660 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses;
Ribosome biogenesis bacterial;
tRNA modification Bacteria
fig|6666666.229934.peg.2046 CDS CP012958.1 2051464 2052153 1 + 690 Ribosyl nicotinamide transporter, PnuC-like NAD and NADP cofactor biosynthesis global
fig|6666666.229934.peg.2047 CDS CP012958.1 2052926 2052228 -2 - 699 tRNA (adenine37-N(6))-methyltransferase TrmN6 (EC 2.1.1.223) RNA methylation
fig|6666666.229934.peg.2048 CDS CP012958.1 2053038 2052910 -3 - 129 hypothetical protein - none -
fig|6666666.229934.peg.2049 CDS CP012958.1 2053025 2054356 2 + 1332 ATP-dependent RNA helicase SrmB - none -
fig|6666666.229934.peg.2050 CDS CP012958.1 2054827 2056128 1 + 1302 Predicted ATPase (AAA+ superfamily) - none -
fig|6666666.229934.peg.2051 CDS CP012958.1 2056187 2057587 2 + 1401 USG protein - none -
fig|6666666.229934.peg.2052 CDS CP012958.1 2058100 2058744 1 + 645 hypothetical protein - none -
fig|6666666.229934.peg.2053 CDS CP012958.1 2059464 2058832 -3 - 633 Pyridoxamine 5@1-phosphate oxidase (EC 1.4.3.5) Pyridoxin (Vitamin B6) Biosynthesis
fig|6666666.229934.peg.2054 CDS CP012958.1 2059635 2060960 3 + 1326 Hexose phosphate uptake regulatory protein UhpC - none -
fig|6666666.229934.peg.2055 CDS CP012958.1 2060975 2061115 2 + 141 hypothetical protein - none -
fig|6666666.229934.peg.2056 CDS CP012958.1 2061371 2061078 -2 - 294 AagD - none -
fig|6666666.229934.peg.2057 CDS CP012958.1 2062609 2061374 -1 - 1236 Biofilm PGA synthesis N-glycosyltransferase PgaC (EC 2.4.-.-) Biofilm Adhesin Biosynthesis
fig|6666666.229934.peg.2058 CDS CP012958.1 2064534 2062618 -3 - 1917 Biofilm PGA synthesis deacetylase PgaB (EC 3.-) Biofilm Adhesin Biosynthesis
fig|6666666.229934.peg.2059 CDS CP012958.1 2066937 2064550 -3 - 2388 Biofilm PGA outer membrane secretin PgaA Biofilm Adhesin Biosynthesis
fig|6666666.229934.peg.2060 CDS CP012958.1 2067222 2067079 -3 - 144 hypothetical protein - none -
fig|6666666.229934.peg.2061 CDS CP012958.1 2067959 2067240 -2 - 720 Purine nucleoside phosphorylase (EC 2.4.2.1) Adenosyl nucleosidases;
Deoxyribose and Deoxynucleoside Catabolism;
Purine conversions;
pyrimidine conversions
fig|6666666.229934.peg.2062 CDS CP012958.1 2069335 2068085 -1 - 1251 Nucleoside permease NupC - none -
fig|6666666.229934.peg.2063 CDS CP012958.1 2070802 2069627 -1 - 1176 Cof protein - none -
fig|6666666.229934.peg.2064 CDS CP012958.1 2071748 2070912 -2 - 837 PTS system, mannose-specific IID component (EC 2.7.1.69) Mannose Metabolism;
Sialic Acid Metabolism
fig|6666666.229934.peg.2065 CDS CP012958.1 2072559 2071762 -3 - 798 PTS system, mannose-specific IIC component - none -
fig|6666666.229934.peg.2066 CDS CP012958.1 2073542 2072577 -2 - 966 PTS system, mannose-specific IIA component (EC 2.7.1.69) / PTS system, mannose-specific IIB component (EC 2.7.1.69) Mannose Metabolism;
Mannose Metabolism;
Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229934.peg.2067 CDS CP012958.1 2074413 2073829 -3 - 585 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) CBSS-266117.6.peg.1260;
CBSS-269801.1.peg.1715;
RNA methylation
fig|6666666.229934.peg.2068 CDS CP012958.1 2074501 2075862 1 + 1362 Signal recognition particle receptor protein FtsY (=alpha subunit) (TC 3.A.5.1.1) Bacterial Cell Division;
Bacterial signal recognition particle (SRP);
Universal GTPases
fig|6666666.229934.peg.2069 CDS CP012958.1 2076037 2077041 1 + 1005 Tryptophanyl-tRNA synthetase (EC 6.1.1.2) tRNA aminoacylation, Trp
fig|6666666.229934.peg.2070 CDS CP012958.1 2077772 2077128 -2 - 645 3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster;
riboflavin to FAD
fig|6666666.229934.peg.2071 CDS CP012958.1 2079225 2078452 -3 - 774 Zn-dependent protease with chaperone function - none -
fig|6666666.229934.peg.2072 CDS CP012958.1 2079828 2079301 -3 - 528 Inorganic pyrophosphatase (EC 3.6.1.1) Phosphate metabolism
fig|6666666.229934.peg.2073 CDS CP012958.1 2079990 2081234 3 + 1245 Tryptophan-specific transport protein - none -
fig|6666666.229934.peg.2074 CDS CP012958.1 2081513 2081830 2 + 318 hypothetical protein - none -
fig|6666666.229934.peg.2075 CDS CP012958.1 2082919 2082212 -1 - 708 NMN phosphatase (EC 3.1.3.5); Class B acid phosphatase precursor (EC 3.1.3.2) NAD and NADP cofactor biosynthesis global
fig|6666666.229934.peg.2076 CDS CP012958.1 2083134 2083661 3 + 528 ATP-dependent protease HslV (EC 3.4.25.-) Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229934.peg.2077 CDS CP012958.1 2083682 2085013 2 + 1332 ATP-dependent hsl protease ATP-binding subunit HslU Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229934.peg.2078 CDS CP012958.1 2085079 2086662 1 + 1584 Nickel ABC transporter, periplasmic nickel-binding protein NikA (TC 3.A.1.5.3) Transport of Nickel and Cobalt
fig|6666666.229934.peg.2079 CDS CP012958.1 2086728 2087504 3 + 777 Nucleoside ABC transporter, periplasmic nucleoside-binding protein - none -
fig|6666666.229934.peg.2080 CDS CP012958.1 2087522 2088016 2 + 495 Protein yfbU - none -
fig|6666666.229934.peg.2081 CDS CP012958.1 2088784 2088101 -1 - 684 Phosphoglycerate mutase (EC 5.4.2.1) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis;
Phosphoglycerate mutase protein family
fig|6666666.229934.peg.2082 CDS CP012958.1 2089090 2090748 1 + 1659 Phosphoglucosamine mutase (EC 5.4.2.10) Sialic Acid Metabolism;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229934.peg.2083 CDS CP012958.1 2090999 2092216 2 + 1218 Periplasmic septal ring factor with murein hydrolase activity EnvC/YibP CBSS-224911.1.peg.435;
Glutaredoxins;
Phosphoglycerate mutase protein family
fig|6666666.229934.peg.2084 CDS CP012958.1 2092213 2093040 1 + 828 Putative periplasmic protein YibQ, distant homology with nucleoside diphosphatase and polysaccharide deacetylase CBSS-224911.1.peg.435;
Phosphoglycerate mutase protein family
fig|6666666.229934.peg.2085 CDS CP012958.1 2093756 2093052 -2 - 705 MG(2+) CHELATASE FAMILY PROTEIN / ComM-related protein - none -
fig|6666666.229934.peg.2086 CDS CP012958.1 2093892 2094554 3 + 663 FIGfam050825 - none -
fig|6666666.229934.peg.2087 CDS CP012958.1 2094547 2096466 1 + 1920 TniA putative transposase - none -
fig|6666666.229934.peg.2088 CDS CP012958.1 2096466 2097935 3 + 1470 Mll9366 protein - none -
fig|6666666.229934.peg.2089 CDS CP012958.1 2097932 2099347 2 + 1416 FIGfam110555 - none -
fig|6666666.229934.peg.2090 CDS CP012958.1 2100175 2101269 1 + 1095 Recombinase - none -
fig|6666666.229934.peg.2091 CDS CP012958.1 2101337 2101894 2 + 558 Chromosome (plasmid) partitioning protein ParB Bacterial Cytoskeleton;
Cell Division Subsystem including YidCD;
RNA modification and chromosome partitioning cluster
fig|6666666.229934.peg.2092 CDS CP012958.1 2101929 2102741 3 + 813 Bll0873 protein - none -
fig|6666666.229934.peg.2093 CDS CP012958.1 2102985 2102860 -3 - 126 hypothetical protein - none -
fig|6666666.229934.peg.2094 CDS CP012958.1 2104078 2103563 -1 - 516 hypothetical protein - none -
fig|6666666.229934.peg.2095 CDS CP012958.1 2104453 2104082 -1 - 372 hypothetical protein - none -
fig|6666666.229934.peg.2096 CDS CP012958.1 2109530 2104665 -2 - 4866 VgrG protein - none -
fig|6666666.229934.peg.2097 CDS CP012958.1 2109802 2110461 1 + 660 Methyltransferase - none -
fig|6666666.229934.peg.2098 CDS CP012958.1 2110477 2111304 1 + 828 Thermostable 8-oxoguanine DNA glycosylase - none -
fig|6666666.229934.peg.2099 CDS CP012958.1 2113788 2112541 -3 - 1248 Ribokinase (EC 2.7.1.15) D-ribose utilization;
Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.229934.peg.2100 CDS CP012958.1 2116124 2114376 -2 - 1749 hypothetical protein - none -
fig|6666666.229934.peg.2101 CDS CP012958.1 2117029 2116226 -1 - 804 MG(2+) CHELATASE FAMILY PROTEIN - none -
fig|6666666.229934.peg.2102 CDS CP012958.1 2117758 2117144 -1 - 615 GTP-binding protein EngB Universal GTPases
fig|6666666.229934.peg.2103 CDS CP012958.1 2117768 2117881 2 + 114 hypothetical protein - none -
fig|6666666.229934.peg.2104 CDS CP012958.1 2117891 2118766 2 + 876 Membrane protein LAPB - none -
fig|6666666.229934.peg.2105 CDS CP012958.1 2119338 2118862 -3 - 477 tRNA (cytidine(34)-2@1-O)-methyltransferase (EC 2.1.1.207) Biotin synthesis cluster;
RNA methylation
fig|6666666.229934.peg.2106 CDS CP012958.1 2119954 2119457 -1 - 498 Phospholipid-binding protein - none -
fig|6666666.229934.peg.2107 CDS CP012958.1 2120902 2120060 -1 - 843 Methionine ABC transporter substrate-binding protein Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229934.peg.2108 CDS CP012958.1 2121614 2120937 -2 - 678 Methionine ABC transporter permease protein Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229934.peg.2109 CDS CP012958.1 2122641 2121604 -3 - 1038 Methionine ABC transporter ATP-binding protein Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229934.peg.2110 CDS CP012958.1 2122838 2123395 2 + 558 D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase (EC 3.1.1.-) Capsular heptose biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.229934.rna.1 RNA CP012958.1 9941 10014 2 + 74 tRNA-Pro-TGG - none -
fig|6666666.229934.rna.2 RNA CP012958.1 10051 10124 1 + 74 tRNA-Arg-TCT - none -
fig|6666666.229934.rna.3 RNA CP012958.1 31826 31898 2 + 73 tRNA-Phe-GAA tRNAs
fig|6666666.229934.rna.4 RNA CP012958.1 31906 31978 1 + 73 tRNA-Asn-GTT - none -
fig|6666666.229934.rna.5 RNA CP012958.1 115229 115157 -2 - 73 tRNA-Thr-GGT - none -
fig|6666666.229934.rna.6 RNA CP012958.1 115307 115236 -2 - 72 tRNA-Gly-TCC - none -
fig|6666666.229934.rna.7 RNA CP012958.1 115432 115351 -1 - 82 tRNA-Tyr-GTA - none -
fig|6666666.229934.rna.8 RNA CP012958.1 115538 115466 -2 - 73 tRNA-Thr-TGT - none -
fig|6666666.229934.rna.9 RNA CP012958.1 144516 144443 -3 - 74 tRNA-Met-CAT - none -
fig|6666666.229934.rna.10 RNA CP012958.1 217085 217167 2 + 83 tRNA-Leu-GAG tRNAs
fig|6666666.229934.rna.11 RNA CP012958.1 245355 245438 3 + 84 tRNA-Leu-CAG tRNAs
fig|6666666.229934.rna.12 RNA CP012958.1 303188 303116 -2 - 73 tRNA-Lys-TTT - none -
fig|6666666.229934.rna.13 RNA CP012958.1 303327 303244 -3 - 84 tRNA-Leu-TAA - none -
fig|6666666.229934.rna.14 RNA CP012958.1 303404 303332 -2 - 73 tRNA-Gly-GCC tRNAs
fig|6666666.229934.rna.15 RNA CP012958.1 331946 333485 2 + 1540 Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA - none -
fig|6666666.229934.rna.16 RNA CP012958.1 333585 333657 3 + 73 tRNA-Glu-TTC - none -
fig|6666666.229934.rna.17 RNA CP012958.1 333867 336909 3 + 3043 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA - none -
fig|6666666.229934.rna.18 RNA CP012958.1 337170 337288 3 + 119 5S RNA - none -
fig|6666666.229934.rna.19 RNA CP012958.1 359496 359424 -3 - 73 tRNA-Gly-GCC tRNAs
fig|6666666.229934.rna.20 RNA CP012958.1 557154 557227 3 + 74 tRNA-Met-CAT - none -
fig|6666666.229934.rna.21 RNA CP012958.1 557236 557317 1 + 82 tRNA-Leu-TAG - none -
fig|6666666.229934.rna.22 RNA CP012958.1 557350 557421 1 + 72 tRNA-Gln-TTG - none -
fig|6666666.229934.rna.23 RNA CP012958.1 557462 557533 2 + 72 tRNA-Gln-TTG - none -
fig|6666666.229934.rna.24 RNA CP012958.1 582871 582944 1 + 74 tRNA-Met-CAT - none -
fig|6666666.229934.rna.25 RNA CP012958.1 831558 831485 -3 - 74 tRNA-Val-GAC tRNAs
fig|6666666.229934.rna.26 RNA CP012958.1 850913 850795 -2 - 119 5S RNA - none -
fig|6666666.229934.rna.27 RNA CP012958.1 854216 851174 -2 - 3043 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA - none -
fig|6666666.229934.rna.28 RNA CP012958.1 854571 854499 -3 - 73 tRNA-Ala-TGC - none -
fig|6666666.229934.rna.29 RNA CP012958.1 854697 854624 -3 - 74 tRNA-Ile-GAT - none -
fig|6666666.229934.rna.30 RNA CP012958.1 856320 854781 -3 - 1540 Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA - none -
fig|6666666.229934.rna.31 RNA CP012958.1 929727 929813 3 + 87 tRNA-Ser-GGA tRNAs
fig|6666666.229934.rna.32 RNA CP012958.1 948432 948360 -3 - 73 tRNA-Trp-CCA tRNAs
fig|6666666.229934.rna.33 RNA CP012958.1 948543 948470 -3 - 74 tRNA-Asp-GTC - none -
fig|6666666.229934.rna.34 RNA CP012958.1 948834 948716 -3 - 119 5S RNA - none -
fig|6666666.229934.rna.35 RNA CP012958.1 952137 949095 -3 - 3043 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA - none -
fig|6666666.229934.rna.36 RNA CP012958.1 952419 952347 -3 - 73 tRNA-Glu-TTC - none -
fig|6666666.229934.rna.37 RNA CP012958.1 954058 952519 -1 - 1540 Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA - none -
fig|6666666.229934.rna.38 RNA CP012958.1 954319 954246 -1 - 74 tRNA-Pro-TGG - none -
fig|6666666.229934.rna.39 RNA CP012958.1 954397 954325 -1 - 73 tRNA-His-GTG - none -
fig|6666666.229934.rna.40 RNA CP012958.1 954505 954432 -1 - 74 tRNA-Arg-CCG tRNAs
fig|6666666.229934.rna.41 RNA CP012958.1 1004446 1004518 1 + 73 tRNA-Asn-GTT - none -
fig|6666666.229934.rna.42 RNA CP012958.1 1078792 1078874 1 + 83 tRNA-Leu-CAA tRNAs
fig|6666666.229934.rna.43 RNA CP012958.1 1220705 1220778 2 + 74 tRNA-Asp-GTC - none -
fig|6666666.229934.rna.44 RNA CP012958.1 1220804 1220877 2 + 74 tRNA-Asp-GTC - none -
fig|6666666.229934.rna.45 RNA CP012958.1 1277650 1277577 -1 - 74 tRNA-Lys-CTT - none -
fig|6666666.229934.rna.46 RNA CP012958.1 1277751 1277679 -3 - 73 tRNA-Lys-TTT - none -
fig|6666666.229934.rna.47 RNA CP012958.1 1277853 1277781 -3 - 73 tRNA-Lys-TTT - none -
fig|6666666.229934.rna.48 RNA CP012958.1 1325911 1325825 -1 - 87 tRNA-Ser-TGA - none -
fig|6666666.229934.rna.49 RNA CP012958.1 1333266 1333338 3 + 73 tRNA-Gly-GCC tRNAs
fig|6666666.229934.rna.50 RNA CP012958.1 1333350 1333420 3 + 71 tRNA-Cys-GCA tRNAs
fig|6666666.229934.rna.51 RNA CP012958.1 1341019 1340946 -1 - 74 tRNA-Met-CAT - none -
fig|6666666.229934.rna.52 RNA CP012958.1 1526331 1526259 -3 - 73 tRNA-Ala-GGC tRNAs
fig|6666666.229934.rna.53 RNA CP012958.1 1528141 1528213 1 + 73 tRNA-Val-TAC - none -
fig|6666666.229934.rna.54 RNA CP012958.1 1528255 1528327 1 + 73 tRNA-Val-TAC - none -
fig|6666666.229934.rna.55 RNA CP012958.1 1528358 1528430 2 + 73 tRNA-Val-TAC - none -
fig|6666666.229934.rna.56 RNA CP012958.1 1657982 1657864 -2 - 119 5S RNA - none -
fig|6666666.229934.rna.57 RNA CP012958.1 1661285 1658243 -2 - 3043 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA - none -
fig|6666666.229934.rna.58 RNA CP012958.1 1661640 1661568 -3 - 73 tRNA-Ala-TGC - none -
fig|6666666.229934.rna.59 RNA CP012958.1 1661766 1661693 -3 - 74 tRNA-Ile-GAT - none -
fig|6666666.229934.rna.60 RNA CP012958.1 1663389 1661850 -3 - 1540 Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA - none -
fig|6666666.229934.rna.61 RNA CP012958.1 1883881 1883791 -1 - 91 tRNA-SeC(p)-TCA - none -
fig|6666666.229934.rna.62 RNA CP012958.1 1974573 1976112 3 + 1540 Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA - none -
fig|6666666.229934.rna.63 RNA CP012958.1 1976212 1976284 1 + 73 tRNA-Glu-TTC - none -
fig|6666666.229934.rna.64 RNA CP012958.1 1976494 1979536 1 + 3043 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA - none -
fig|6666666.229934.rna.65 RNA CP012958.1 1979797 1979915 1 + 119 5S RNA - none -
fig|6666666.229934.rna.66 RNA CP012958.1 2046791 2046881 2 + 91 tRNA-Ser-GCT - none -
fig|6666666.229934.rna.67 RNA CP012958.1 2046902 2046975 2 + 74 tRNA-Arg-ACG tRNAs
fig|6666666.229934.rna.68 RNA CP012958.1 2047033 2047106 1 + 74 tRNA-Arg-ACG tRNAs
fig|6666666.229934.rna.69 RNA CP012958.1 2123678 2125217 2 + 1540 Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA - none -
fig|6666666.229934.rna.70 RNA CP012958.1 2125317 2125389 3 + 73 tRNA-Glu-TTC - none -
fig|6666666.229934.rna.71 RNA CP012958.1 2125599 2128641 3 + 3043 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA - none -
fig|6666666.229934.rna.72 RNA CP012958.1 2128902 2129020 3 + 119 5S RNA - none -