fig|6666666.229936.peg.1 CDS CP008984.1 1 1362 1 + 1362 Chromosomal replication initiator protein DnaA Cell Division Subsystem including YidCD;
DNA replication cluster 1
fig|6666666.229936.peg.2 CDS CP008984.1 1370 2473 2 + 1104 DNA polymerase III beta subunit (EC 2.7.7.7) Cell Division Subsystem including YidCD;
DNA replication cluster 1
fig|6666666.229936.peg.3 CDS CP008984.1 2477 3553 2 + 1077 DNA recombination and repair protein RecF Cell Division Subsystem including YidCD;
DNA repair, bacterial RecFOR pathway;
DNA replication cluster 1
fig|6666666.229936.peg.4 CDS CP008984.1 4355 3600 -2 - 756 Ubiquinone/menaquinone biosynthesis methyltransferase UbiE (EC 2.1.1.-) Menaquinone and Phylloquinone Biosynthesis;
Ubiquinone Biosynthesis
fig|6666666.229936.peg.5 CDS CP008984.1 4543 5118 1 + 576 Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1) Oxidative stress;
Protection from Reactive Oxygen Species
fig|6666666.229936.peg.6 CDS CP008984.1 5186 5317 2 + 132 hypothetical protein - none -
fig|6666666.229936.peg.7 CDS CP008984.1 5385 5558 3 + 174 hypothetical protein - none -
fig|6666666.229936.peg.8 CDS CP008984.1 5732 5857 2 + 126 Mobile element protein - none -
fig|6666666.229936.peg.9 CDS CP008984.1 5851 6360 1 + 510 Mobile element protein - none -
fig|6666666.229936.peg.10 CDS CP008984.1 6821 6570 -2 - 252 Transcriptional regulator, XRE family - none -
fig|6666666.229936.peg.11 CDS CP008984.1 6972 8396 3 + 1425 NAD-dependent malic enzyme (EC 1.1.1.38) Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229936.peg.12 CDS CP008984.1 8499 10334 3 + 1836 hypothetical protein - none -
fig|6666666.229936.peg.13 CDS CP008984.1 10572 10709 3 + 138 hypothetical protein - none -
fig|6666666.229936.peg.14 CDS CP008984.1 10690 11820 1 + 1131 hypothetical protein - none -
fig|6666666.229936.peg.15 CDS CP008984.1 11839 12885 1 + 1047 putative phage protein - none -
fig|6666666.229936.peg.16 CDS CP008984.1 12939 14549 3 + 1611 putative phage protein - none -
fig|6666666.229936.peg.17 CDS CP008984.1 14812 17679 1 + 2868 DNA helicase IV CBSS-83333.1.peg.946;
DNA repair, bacterial UvrD and related helicases
fig|6666666.229936.peg.18 CDS CP008984.1 17709 18947 3 + 1239 hypothetical protein - none -
fig|6666666.229936.peg.19 CDS CP008984.1 19151 19363 2 + 213 Transcriptional regulator, MerR family Cobalt-zinc-cadmium resistance
fig|6666666.229936.peg.20 CDS CP008984.1 19375 20049 1 + 675 hypothetical protein - none -
fig|6666666.229936.peg.21 CDS CP008984.1 20602 20129 -1 - 474 hypothetical protein - none -
fig|6666666.229936.peg.22 CDS CP008984.1 23353 20732 -1 - 2622 FIG00647261: hypothetical protein - none -
fig|6666666.229936.peg.23 CDS CP008984.1 25003 23363 -1 - 1641 Type III restriction-modification system methylation subunit (EC 2.1.1.72) Restriction-Modification System
fig|6666666.229936.peg.24 CDS CP008984.1 25228 25016 -1 - 213 hypothetical protein - none -
fig|6666666.229936.peg.25 CDS CP008984.1 25681 25418 -1 - 264 FIGfam110555 CBSS-203122.12.peg.188
fig|6666666.229936.peg.26 CDS CP008984.1 26553 25780 -3 - 774 Mll9366 protein CBSS-203122.12.peg.188
fig|6666666.229936.peg.27 CDS CP008984.1 27404 26511 -2 - 894 TniB NTP-binding protein CBSS-203122.12.peg.188
fig|6666666.229936.peg.28 CDS CP008984.1 27694 27404 -1 - 291 TniA putative transposase CBSS-203122.12.peg.188
fig|6666666.229936.peg.29 CDS CP008984.1 29318 27696 -2 - 1623 TniA putative transposase CBSS-203122.12.peg.188
fig|6666666.229936.peg.30 CDS CP008984.1 29844 29311 -3 - 534 FIGfam050825 CBSS-203122.12.peg.188
fig|6666666.229936.peg.31 CDS CP008984.1 30456 30049 -3 - 408 hypothetical protein - none -
fig|6666666.229936.peg.32 CDS CP008984.1 31502 30453 -2 - 1050 Cytochrome c-type heme lyase subunit nrfF, nitrite reductase complex assembly - none -
fig|6666666.229936.peg.33 CDS CP008984.1 32029 31499 -1 - 531 Putative thiol:disulfide oxidoreductase, nitrite reductase complex assembly - none -
fig|6666666.229936.peg.34 CDS CP008984.1 33932 32022 -2 - 1911 Cytochrome c-type heme lyase subunit nrfE, nitrite reductase complex assembly - none -
fig|6666666.229936.peg.35 CDS CP008984.1 33954 34322 3 + 369 hypothetical protein - none -
fig|6666666.229936.peg.36 CDS CP008984.1 35484 34519 -3 - 966 NrfD protein - none -
fig|6666666.229936.peg.37 CDS CP008984.1 36104 35481 -2 - 624 NrfC protein - none -
fig|6666666.229936.peg.38 CDS CP008984.1 36820 36155 -1 - 666 Cytochrome c-type protein NrfB precursor - none -
fig|6666666.229936.peg.39 CDS CP008984.1 38417 36894 -2 - 1524 Cytochrome c552 precursor (EC 1.7.2.2) Soluble cytochromes and functionally related electron carriers
fig|6666666.229936.peg.40 CDS CP008984.1 39284 38994 -2 - 291 hypothetical protein - none -
fig|6666666.229936.peg.41 CDS CP008984.1 39775 39302 -1 - 474 Parvulin-like peptidyl-prolyl isomerase - none -
fig|6666666.229936.peg.42 CDS CP008984.1 39925 39803 -1 - 123 hypothetical protein - none -
fig|6666666.229936.peg.43 CDS CP008984.1 40983 40060 -3 - 924 Cytochrome c heme lyase subunit CcmH Biogenesis of c-type cytochromes;
Copper homeostasis
fig|6666666.229936.peg.44 CDS CP008984.1 41435 40983 -2 - 453 Cytochrome c heme lyase subunit CcmL Biogenesis of c-type cytochromes
fig|6666666.229936.peg.45 CDS CP008984.1 42079 41534 -1 - 546 Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase Biogenesis of c-type cytochromes;
Periplasmic disulfide interchange
fig|6666666.229936.peg.46 CDS CP008984.1 44066 42108 -2 - 1959 Cytochrome c heme lyase subunit CcmF Biogenesis of c-type cytochromes;
Copper homeostasis
fig|6666666.229936.peg.47 CDS CP008984.1 44584 44066 -1 - 519 Cytochrome c-type biogenesis protein CcmE, heme chaperone Biogenesis of c-type cytochromes
fig|6666666.229936.peg.48 CDS CP008984.1 44787 44581 -3 - 207 Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE Biogenesis of c-type cytochromes
fig|6666666.229936.peg.49 CDS CP008984.1 45542 44805 -2 - 738 Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE Biogenesis of c-type cytochromes
fig|6666666.229936.peg.50 CDS CP008984.1 46218 45553 -3 - 666 ABC transporter involved in cytochrome c biogenesis, CcmB subunit Biogenesis of c-type cytochromes
fig|6666666.229936.peg.51 CDS CP008984.1 46858 46223 -1 - 636 ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA Biogenesis of c-type cytochromes
fig|6666666.229936.peg.52 CDS CP008984.1 48223 47030 -1 - 1194 Bicyclomycin resistance protein - none -
fig|6666666.229936.peg.53 CDS CP008984.1 48929 48228 -2 - 702 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses
fig|6666666.229936.peg.54 CDS CP008984.1 48971 49153 2 + 183 hypothetical protein - none -
fig|6666666.229936.peg.55 CDS CP008984.1 49146 51410 3 + 2265 NADP-dependent malic enzyme (EC 1.1.1.40) Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229936.peg.56 CDS CP008984.1 51554 52198 2 + 645 Manganese superoxide dismutase (EC 1.15.1.1) Oxidative stress;
Protection from Reactive Oxygen Species
fig|6666666.229936.peg.57 CDS CP008984.1 52609 53400 1 + 792 putative lipoprotein - none -
fig|6666666.229936.peg.58 CDS CP008984.1 54431 53604 -2 - 828 YpfJ protein, zinc metalloprotease superfamily Broadly distributed proteins not in subsystems
fig|6666666.229936.peg.59 CDS CP008984.1 54571 55014 1 + 444 FIG00904084: hypothetical protein - none -
fig|6666666.229936.peg.60 CDS CP008984.1 55700 55104 -2 - 597 Acyl-phosphate:glycerol-3-phosphate O-acyltransferase PlsY Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229936.peg.61 CDS CP008984.1 55797 56150 3 + 354 Dihydroneopterin aldolase (EC 4.1.2.25) Folate Biosynthesis;
Folate biosynthesis cluster
fig|6666666.229936.peg.62 CDS CP008984.1 56171 57601 2 + 1431 Transglycosylase, Slt family - none -
fig|6666666.229936.peg.63 CDS CP008984.1 57612 57758 3 + 147 hypothetical protein - none -
fig|6666666.229936.peg.64 CDS CP008984.1 58340 57801 -2 - 540 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation Biogenesis of c-type cytochromes;
Periplasmic disulfide interchange
fig|6666666.229936.peg.65 CDS CP008984.1 59908 58364 -1 - 1545 Na+/H+ antiporter NhaB - none -
fig|6666666.229936.peg.66 CDS CP008984.1 60103 60834 1 + 732 Transcriptional regulator for fatty acid degradation FadR, GntR family - none -
fig|6666666.229936.peg.67 CDS CP008984.1 62169 60955 -3 - 1215 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229936.peg.68 CDS CP008984.1 62286 63590 3 + 1305 Menaquinone-specific isochorismate synthase (EC 5.4.4.2) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229936.peg.69 CDS CP008984.1 63581 65287 2 + 1707 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase (EC 2.2.1.9) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229936.peg.70 CDS CP008984.1 65340 66089 3 + 750 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase (EC 4.2.99.20) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229936.peg.71 CDS CP008984.1 66185 66454 2 + 270 SSU ribosomal protein S15p (S13e) - none -
fig|6666666.229936.peg.72 CDS CP008984.1 66662 67816 2 + 1155 S-adenosylmethionine synthetase (EC 2.5.1.6) Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229936.peg.73 CDS CP008984.1 67885 68385 1 + 501 Protein sprT - none -
fig|6666666.229936.peg.74 CDS CP008984.1 68542 69783 1 + 1242 Serine transporter Glycine and Serine Utilization;
Pyruvate Alanine Serine Interconversions
fig|6666666.229936.peg.75 CDS CP008984.1 69876 71240 3 + 1365 L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17) Glycine and Serine Utilization;
Glycine and Serine Utilization;
Pyruvate Alanine Serine Interconversions;
Pyruvate Alanine Serine Interconversions
fig|6666666.229936.peg.76 CDS CP008984.1 72470 71421 -2 - 1050 L-asparaginase (EC 3.5.1.1) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229936.peg.77 CDS CP008984.1 72765 73904 3 + 1140 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) CBSS-498211.3.peg.1415;
Conserved gene cluster associated with Met-tRNA formyltransferase;
RNA methylation
fig|6666666.229936.peg.78 CDS CP008984.1 73926 74477 3 + 552 Type IV pilus biogenesis protein PilF CBSS-498211.3.peg.1415
fig|6666666.229936.peg.79 CDS CP008984.1 74621 75676 2 + 1056 FIG021952: putative membrane protein CBSS-498211.3.peg.1415
fig|6666666.229936.peg.80 CDS CP008984.1 75688 76791 1 + 1104 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (EC 1.17.7.1) CBSS-498211.3.peg.1415;
CBSS-83331.1.peg.3039;
Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.229936.peg.81 CDS CP008984.1 76813 78090 1 + 1278 Histidyl-tRNA synthetase (EC 6.1.1.21) CBSS-498211.3.peg.1415;
tRNA aminoacylation, His
fig|6666666.229936.peg.82 CDS CP008984.1 78101 78715 2 + 615 Mlr7403 protein CBSS-290633.1.peg.1906;
CBSS-498211.3.peg.1415
fig|6666666.229936.peg.83 CDS CP008984.1 78768 79220 3 + 453 Putative protein-S-isoprenylcysteine methyltransferase - none -
fig|6666666.229936.peg.84 CDS CP008984.1 79930 79226 -1 - 705 Chromosomal replication initiator protein DnaA Cell Division Subsystem including YidCD;
DNA replication cluster 1
fig|6666666.229936.peg.85 CDS CP008984.1 79916 80053 2 + 138 hypothetical protein - none -
fig|6666666.229936.peg.86 CDS CP008984.1 81303 80050 -3 - 1254 Uracil permease De Novo Pyrimidine Synthesis
fig|6666666.229936.peg.87 CDS CP008984.1 82053 81427 -3 - 627 Uracil phosphoribosyltransferase (EC 2.4.2.9) De Novo Pyrimidine Synthesis;
pyrimidine conversions
fig|6666666.229936.peg.88 CDS CP008984.1 84035 82188 -2 - 1848 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase
fig|6666666.229936.peg.89 CDS CP008984.1 86441 84168 -2 - 2274 Glutathione biosynthesis bifunctional protein gshF (EC 6.3.2.2)(EC 6.3.2.3) Glutathione: Biosynthesis and gamma-glutamyl cycle
fig|6666666.229936.peg.90 CDS CP008984.1 86673 88274 3 + 1602 Dca - none -
fig|6666666.229936.peg.91 CDS CP008984.1 88531 89097 1 + 567 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent;
cAMP signaling in bacteria
fig|6666666.229936.peg.92 CDS CP008984.1 89107 90348 1 + 1242 ATP-dependent Clp protease ATP-binding subunit ClpX Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229936.peg.93 CDS CP008984.1 90734 90411 -2 - 324 FIG074102: hypothetical protein - none -
fig|6666666.229936.peg.94 CDS CP008984.1 90891 90727 -3 - 165 Phage-related protein - none -
fig|6666666.229936.peg.95 CDS CP008984.1 92039 91194 -2 - 846 membrane protein, putative - none -
fig|6666666.229936.peg.96 CDS CP008984.1 94271 92112 -2 - 2160 Copper-translocating P-type ATPase (EC 3.6.3.4) Copper Transport System;
Copper homeostasis
fig|6666666.229936.peg.97 CDS CP008984.1 94570 94358 -1 - 213 Copper chaperone Copper homeostasis
fig|6666666.229936.peg.98 CDS CP008984.1 94665 95051 3 + 387 Cu(I)-responsive transcriptional regulator Copper homeostasis
fig|6666666.229936.peg.99 CDS CP008984.1 95363 95079 -2 - 285 COG1720: Uncharacterized conserved protein tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229936.peg.100 CDS CP008984.1 95476 96396 1 + 921 1,4-dihydroxy-2-naphthoate polyprenyltransferase (EC 2.5.1.74) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229936.peg.101 CDS CP008984.1 96447 96947 3 + 501 Ribonuclease E inhibitor RraA RNA processing and degradation, bacterial
fig|6666666.229936.peg.102 CDS CP008984.1 97136 98518 2 + 1383 Arsenic efflux pump protein Arsenic resistance
fig|6666666.229936.peg.103 CDS CP008984.1 99121 98588 -1 - 534 FIG138315: Putative alpha helix protein Putative TldE-TldD proteolytic complex
fig|6666666.229936.peg.104 CDS CP008984.1 99241 100602 1 + 1362 TldE protein, part of TldE/TldD proteolytic complex Putative TldE-TldD proteolytic complex
fig|6666666.229936.peg.105 CDS CP008984.1 100840 101379 1 + 540 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) Cell division-ribosomal stress proteins cluster;
Folate biosynthesis cluster;
Purine conversions
fig|6666666.229936.peg.106 CDS CP008984.1 102588 101449 -3 - 1140 Glycerate kinase (EC 2.7.1.31) D-galactarate, D-glucarate and D-glycerate catabolism;
D-galactarate, D-glucarate and D-glycerate catabolism - gjo;
Glycerate metabolism;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Glycine and Serine Utilization;
Serine-glyoxylate cycle
fig|6666666.229936.peg.107 CDS CP008984.1 103859 102585 -2 - 1275 D-glycerate transporter (predicted) D-galactarate, D-glucarate and D-glycerate catabolism;
D-galactarate, D-glucarate and D-glycerate catabolism - gjo;
Glycerate metabolism
fig|6666666.229936.peg.108 CDS CP008984.1 105094 103991 -1 - 1104 Sugar diacid utilization regulator SdaR D-galactarate, D-glucarate and D-glycerate catabolism;
D-galactarate, D-glucarate and D-glycerate catabolism - gjo
fig|6666666.229936.peg.109 CDS CP008984.1 105407 105186 -2 - 222 Mobile element protein - none -
fig|6666666.229936.peg.110 CDS CP008984.1 105399 106010 3 + 612 UDP-glucose dehydrogenase (EC 1.1.1.22) - none -
fig|6666666.229936.peg.111 CDS CP008984.1 107891 106095 -2 - 1797 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) - none -
fig|6666666.229936.peg.112 CDS CP008984.1 108920 108018 -2 - 903 Lipoprotein nlpI precursor - none -
fig|6666666.229936.peg.113 CDS CP008984.1 111236 109005 -2 - 2232 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) Bacterial RNA-metabolizing Zn-dependent hydrolases;
Polyadenylation bacterial
fig|6666666.229936.peg.114 CDS CP008984.1 111428 111898 2 + 471 Putative sugar isomerase involved in processing of exogenous sialic acid Sialic Acid Metabolism
fig|6666666.229936.peg.115 CDS CP008984.1 112012 111887 -1 - 126 hypothetical protein - none -
fig|6666666.229936.peg.116 CDS CP008984.1 113025 112372 -3 - 654 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD Recycling of Peptidoglycan Amino Acids
fig|6666666.229936.peg.117 CDS CP008984.1 113048 113500 2 + 453 Type IV pilin PilA Type IV pilus
fig|6666666.229936.peg.118 CDS CP008984.1 113527 114087 1 + 561 Type IV fimbrial assembly, ATPase PilB Type IV pilus
fig|6666666.229936.peg.119 CDS CP008984.1 114068 114934 2 + 867 Type IV fimbrial assembly, ATPase PilB Type IV pilus
fig|6666666.229936.peg.120 CDS CP008984.1 114927 116150 3 + 1224 Type II secretory pathway, component PulF / Type IV fimbrial assembly protein PilC Type IV pilus
fig|6666666.229936.peg.121 CDS CP008984.1 116150 116836 2 + 687 Leader peptidase (Prepilin peptidase) (EC 3.4.23.43) / N-methyltransferase (EC 2.1.1.-) Type IV pilus;
Type IV pilus
fig|6666666.229936.peg.122 CDS CP008984.1 116886 117509 3 + 624 Dephospho-CoA kinase (EC 2.7.1.24) Coenzyme A Biosynthesis
fig|6666666.229936.peg.123 CDS CP008984.1 117499 117711 1 + 213 FIG003276: zinc-binding protein - none -
fig|6666666.229936.peg.124 CDS CP008984.1 117711 117983 3 + 273 FIG00904058: hypothetical protein - none -
fig|6666666.229936.peg.125 CDS CP008984.1 118380 119753 3 + 1374 Sodium/glycine symporter GlyP - none -
fig|6666666.229936.peg.126 CDS CP008984.1 119981 120304 2 + 324 Ribosome hibernation protein YfiA Ribosome activity modulation
fig|6666666.229936.peg.127 CDS CP008984.1 120759 121007 3 + 249 unknown - none -
fig|6666666.229936.peg.128 CDS CP008984.1 121922 121623 -2 - 300 DNA-binding protein Fis DNA structural proteins, bacterial
fig|6666666.229936.peg.129 CDS CP008984.1 122464 121916 -1 - 549 tRNA dihydrouridine synthase B (EC 1.-.-.-) tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229936.peg.130 CDS CP008984.1 122965 122468 -1 - 498 tRNA dihydrouridine synthase B (EC 1.-.-.-) tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229936.peg.131 CDS CP008984.1 124094 123210 -2 - 885 Ribosomal protein L11 methyltransferase (EC 2.1.1.-) Heat shock dnaK gene cluster extended;
Ribosome biogenesis bacterial
fig|6666666.229936.peg.132 CDS CP008984.1 124649 124107 -2 - 543 Protein involved in cell division - none -
fig|6666666.229936.peg.133 CDS CP008984.1 126104 124668 -2 - 1437 Pantothenate:Na+ symporter (TC 2.A.21.1.1) CBSS-221988.1.peg.1679;
Coenzyme A Biosynthesis
fig|6666666.229936.peg.134 CDS CP008984.1 126373 126101 -1 - 273 FIG003021: Membrane protein CBSS-221988.1.peg.1679
fig|6666666.229936.peg.135 CDS CP008984.1 127785 126397 -3 - 1389 FOG: TPR repeat - none -
fig|6666666.229936.peg.136 CDS CP008984.1 130295 128949 -2 - 1347 Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14) CBSS-221988.1.peg.1679;
Fatty Acid Biosynthesis FASII
fig|6666666.229936.peg.137 CDS CP008984.1 130805 130338 -2 - 468 Biotin carboxyl carrier protein of acetyl-CoA carboxylase CBSS-221988.1.peg.1679;
Fatty Acid Biosynthesis FASII
fig|6666666.229936.peg.138 CDS CP008984.1 130822 130974 1 + 153 hypothetical protein - none -
fig|6666666.229936.peg.139 CDS CP008984.1 131405 130929 -2 - 477 3-dehydroquinate dehydratase II (EC 4.2.1.10) CBSS-221988.1.peg.1679;
Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate);
Quinate degradation
fig|6666666.229936.peg.140 CDS CP008984.1 132505 131504 -1 - 1002 O-succinylbenzoate synthase (EC 4.2.1.113) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo;
Muconate lactonizing enzyme family
fig|6666666.229936.peg.141 CDS CP008984.1 132815 132486 -2 - 330 Nucleotidyltransferase (EC 2.7.7.-) - none -
fig|6666666.229936.peg.142 CDS CP008984.1 133216 132797 -1 - 420 Nucleotidyltransferase substrate binding protein, HI0074 - none -
fig|6666666.229936.peg.143 CDS CP008984.1 134113 133256 -1 - 858 Naphthoate synthase (EC 4.1.3.36) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229936.peg.144 CDS CP008984.1 134992 134225 -1 - 768 Triosephosphate isomerase (EC 5.3.1.1) CBSS-331978.3.peg.2915;
Glycolysis and Gluconeogenesis
fig|6666666.229936.peg.145 CDS CP008984.1 135165 135608 3 + 444 Histone acetyltransferase HPA2 and related acetyltransferases CBSS-216591.1.peg.168
fig|6666666.229936.peg.146 CDS CP008984.1 137049 135682 -3 - 1368 Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22) Heme and Siroheme Biosynthesis
fig|6666666.229936.peg.147 CDS CP008984.1 137502 137068 -3 - 435 Periplasmic/membrane protein associated with DUF414 - none -
fig|6666666.229936.peg.148 CDS CP008984.1 138075 137515 -3 - 561 Protein of unknown function DUF414 - none -
fig|6666666.229936.peg.149 CDS CP008984.1 138703 138176 -1 - 528 tRNA-specific adenosine-34 deaminase (EC 3.5.4.-) tRNA modification Bacteria;
tRNA processing;
tRNAmodification position 34
fig|6666666.229936.peg.150 CDS CP008984.1 139880 139029 -2 - 852 Thymidylate synthase (EC 2.1.1.45) Folate Biosynthesis;
pyrimidine conversions
fig|6666666.229936.peg.151 CDS CP008984.1 140674 139877 -1 - 798 Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-) Lipoprotein Biosynthesis
fig|6666666.229936.peg.152 CDS CP008984.1 141480 140683 -3 - 798 Protein of unknown function DUF81 - none -
fig|6666666.229936.peg.153 CDS CP008984.1 142082 141483 -2 - 600 Adenosine (5@1)-pentaphospho-(5@1@1)-adenosine pyrophosphohydrolase (EC 3.6.1.-) CBSS-224911.1.peg.435;
CBSS-364106.7.peg.3204;
Nudix proteins (nucleoside triphosphate hydrolases);
Phosphoglycerate mutase protein family
fig|6666666.229936.peg.154 CDS CP008984.1 142302 142595 3 + 294 Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229936.peg.155 CDS CP008984.1 142732 144240 1 + 1509 Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229936.peg.156 CDS CP008984.1 144237 145133 3 + 897 Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229936.peg.157 CDS CP008984.1 145223 146095 2 + 873 Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229936.peg.158 CDS CP008984.1 146095 146226 1 + 132 hypothetical protein - none -
fig|6666666.229936.peg.159 CDS CP008984.1 146178 147110 3 + 933 Ribokinase (EC 2.7.1.15) D-ribose utilization;
Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.229936.peg.160 CDS CP008984.1 147417 147208 -3 - 210 Cold shock protein CspG Cold shock, CspA family of proteins
fig|6666666.229936.peg.161 CDS CP008984.1 149309 147864 -2 - 1446 Glutamyl-tRNA synthetase (EC 6.1.1.17) Heme and Siroheme Biosynthesis;
tRNA aminoacylation, Glu and Gln
fig|6666666.229936.peg.162 CDS CP008984.1 149997 150785 3 + 789 Mannosyltransferase OCH1 and related enzymes - none -
fig|6666666.229936.peg.163 CDS CP008984.1 150898 152274 1 + 1377 Argininosuccinate lyase (EC 4.3.2.1) - none -
fig|6666666.229936.peg.164 CDS CP008984.1 152576 153925 2 + 1350 NADP-specific glutamate dehydrogenase (EC 1.4.1.4) Arginine and Ornithine Degradation;
Glutamate dehydrogenases;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Proline Synthesis
fig|6666666.229936.peg.165 CDS CP008984.1 154414 155868 1 + 1455 Catalase (EC 1.11.1.6) Oxidative stress;
Protection from Reactive Oxygen Species
fig|6666666.229936.peg.166 CDS CP008984.1 156699 156541 -3 - 159 hypothetical protein - none -
fig|6666666.229936.peg.167 CDS CP008984.1 156669 156803 3 + 135 hypothetical protein - none -
fig|6666666.229936.peg.168 CDS CP008984.1 160473 156997 -3 - 3477 DNA polymerase III alpha subunit (EC 2.7.7.7) - none -
fig|6666666.229936.peg.169 CDS CP008984.1 160438 160617 1 + 180 hypothetical protein - none -
fig|6666666.229936.peg.170 CDS CP008984.1 160672 162459 1 + 1788 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) Biotin biosynthesis;
Biotin synthesis cluster
fig|6666666.229936.peg.171 CDS CP008984.1 162476 162592 2 + 117 hypothetical protein - none -
fig|6666666.229936.peg.172 CDS CP008984.1 163337 168700 2 + 5364 Autotransporter adhesin - none -
fig|6666666.229936.peg.173 CDS CP008984.1 168954 171080 3 + 2127 Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) Ribonucleotide reduction
fig|6666666.229936.peg.174 CDS CP008984.1 171261 171380 3 + 120 hypothetical protein - none -
fig|6666666.229936.peg.175 CDS CP008984.1 171648 171523 -3 - 126 hypothetical protein - none -
fig|6666666.229936.peg.176 CDS CP008984.1 171682 172149 1 + 468 Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) Ribonucleotide reduction
fig|6666666.229936.peg.177 CDS CP008984.1 172964 172176 -2 - 789 Putative deoxyribonuclease YjjV Deoxyribose and Deoxynucleoside Catabolism;
YcfH
fig|6666666.229936.peg.178 CDS CP008984.1 173248 172967 -1 - 282 hypothetical protein - none -
fig|6666666.229936.peg.179 CDS CP008984.1 173396 173241 -2 - 156 hypothetical protein - none -
fig|6666666.229936.peg.180 CDS CP008984.1 174002 173490 -2 - 513 Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase;
Queuosine-Archaeosine Biosynthesis
fig|6666666.229936.peg.181 CDS CP008984.1 174072 175481 3 + 1410 Cysteinyl-tRNA synthetase (EC 6.1.1.16) tRNA aminoacylation, Cys
fig|6666666.229936.peg.182 CDS CP008984.1 176591 175629 -2 - 963 Lipoate synthase Lipoic acid metabolism;
Lipoic acid synthesis cluster
fig|6666666.229936.peg.183 CDS CP008984.1 177294 176656 -3 - 639 Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase Lipoic acid metabolism;
Lipoic acid synthesis cluster
fig|6666666.229936.peg.184 CDS CP008984.1 177639 177340 -3 - 300 Proposed lipoate regulatory protein YbeD Lipoic acid metabolism;
Lipoic acid synthesis cluster
fig|6666666.229936.peg.185 CDS CP008984.1 178902 177712 -3 - 1191 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) Metallocarboxypeptidases (EC 3.4.17.-);
Murein Hydrolases;
Peptidoglycan Biosynthesis
fig|6666666.229936.peg.186 CDS CP008984.1 179790 178933 -3 - 858 Rare lipoprotein A precursor Peptidoglycan Biosynthesis
fig|6666666.229936.peg.187 CDS CP008984.1 180960 179839 -3 - 1122 Rod shape-determining protein RodA Bacterial Cytoskeleton;
Peptidoglycan Biosynthesis
fig|6666666.229936.peg.188 CDS CP008984.1 182908 180947 -1 - 1962 Penicillin-binding protein 2 (PBP-2) 16S rRNA modification within P site of ribosome;
CBSS-83331.1.peg.3039;
Peptidoglycan Biosynthesis
fig|6666666.229936.peg.189 CDS CP008984.1 183457 182921 -1 - 537 LSU m3Psi1915 methyltransferase RlmH RNA methylation;
Ribosome biogenesis bacterial;
tRNA modification Bacteria
fig|6666666.229936.peg.190 CDS CP008984.1 183756 183448 -3 - 309 Ribosomal silencing factor RsfA (former Iojap) - none -
fig|6666666.229936.peg.191 CDS CP008984.1 185079 183823 -3 - 1257 ATP-dependent RNA helicase RhlB - none -
fig|6666666.229936.peg.192 CDS CP008984.1 185404 186642 1 + 1239 Transcription termination factor Rho Transcription factors bacterial
fig|6666666.229936.peg.193 CDS CP008984.1 188002 186767 -1 - 1236 Major facilitator superfamily (MFS) transport protein - none -
fig|6666666.229936.peg.194 CDS CP008984.1 188089 188202 1 + 114 hypothetical protein - none -
fig|6666666.229936.peg.195 CDS CP008984.1 188467 188237 -1 - 231 Acyl carrier protein Fatty Acid Biosynthesis FASII;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229936.peg.196 CDS CP008984.1 189469 188741 -1 - 729 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) Fatty Acid Biosynthesis FASII
fig|6666666.229936.peg.197 CDS CP008984.1 190432 189494 -1 - 939 Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39) Fatty Acid Biosynthesis FASII
fig|6666666.229936.peg.198 CDS CP008984.1 191489 190539 -2 - 951 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) Fatty Acid Biosynthesis FASII
fig|6666666.229936.peg.199 CDS CP008984.1 192555 191536 -3 - 1020 Phosphate:acyl-ACP acyltransferase PlsX Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229936.peg.200 CDS CP008984.1 192752 192582 -2 - 171 LSU ribosomal protein L32p - none -
fig|6666666.229936.peg.201 CDS CP008984.1 193293 192769 -3 - 525 COG1399 protein, clustered with ribosomal protein L32p - none -
fig|6666666.229936.peg.202 CDS CP008984.1 194006 193365 -2 - 642 Dethiobiotin synthetase (EC 6.3.3.3) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229936.peg.203 CDS CP008984.1 194746 194006 -1 - 741 Biotin synthesis protein BioC Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229936.peg.204 CDS CP008984.1 195414 194764 -3 - 651 Biotin synthesis protein BioG Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229936.peg.205 CDS CP008984.1 196570 195395 -1 - 1176 8-amino-7-oxononanoate synthase (EC 2.3.1.47) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229936.peg.206 CDS CP008984.1 197852 196563 -2 - 1290 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229936.peg.207 CDS CP008984.1 198075 198944 3 + 870 Phosphatidylserine decarboxylase (EC 4.1.1.65) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229936.peg.208 CDS CP008984.1 198970 199602 1 + 633 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase
fig|6666666.229936.peg.209 CDS CP008984.1 200067 199666 -3 - 402 Glutamate 5-kinase (EC 2.7.2.11) Proline Synthesis
fig|6666666.229936.peg.210 CDS CP008984.1 200309 200097 -2 - 213 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA Proline Synthesis;
Proline Synthesis
fig|6666666.229936.peg.211 CDS CP008984.1 200469 200290 -3 - 180 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA Proline Synthesis;
Proline Synthesis
fig|6666666.229936.peg.212 CDS CP008984.1 200620 201405 1 + 786 FIG023911: putative membrane protein CBSS-316275.9.peg.382
fig|6666666.229936.peg.213 CDS CP008984.1 201407 201871 2 + 465 FIG001826: putative inner membrane protein CBSS-316275.9.peg.382
fig|6666666.229936.peg.214 CDS CP008984.1 201911 202396 2 + 486 Dihydrofolate reductase (EC 1.5.1.3) 5-FCL-like protein;
Folate Biosynthesis
fig|6666666.229936.peg.215 CDS CP008984.1 203826 202516 -3 - 1311 Magnesium and cobalt efflux protein CorC CBSS-56780.10.peg.1536;
Copper homeostasis: copper tolerance;
Glycyl-tRNA synthetase containing cluster;
Magnesium transport;
tRNA-methylthiotransferase containing cluster
fig|6666666.229936.peg.216 CDS CP008984.1 203780 203920 2 + 141 hypothetical protein - none -
fig|6666666.229936.peg.217 CDS CP008984.1 204441 203917 -3 - 525 FIG00696143: hypothetical protein - none -
fig|6666666.229936.peg.218 CDS CP008984.1 205255 204473 -1 - 783 Putative deoxyribonuclease YcfH YcfH
fig|6666666.229936.peg.219 CDS CP008984.1 206242 205259 -1 - 984 DNA polymerase III delta prime subunit (EC 2.7.7.7) - none -
fig|6666666.229936.peg.220 CDS CP008984.1 206871 206239 -3 - 633 Thymidylate kinase (EC 2.7.4.9) pyrimidine conversions
fig|6666666.229936.peg.221 CDS CP008984.1 207916 206873 -1 - 1044 FIG004453: protein YceG like CBSS-323097.3.peg.2594;
Cluster containing Alanyl-tRNA synthetase;
tRNA modification Bacteria
fig|6666666.229936.peg.222 CDS CP008984.1 208393 208055 -1 - 339 Nitrogen regulatory protein P-II Ammonia assimilation
fig|6666666.229936.peg.223 CDS CP008984.1 209227 208469 -1 - 759 Transcriptional regulators of sugar metabolism - none -
fig|6666666.229936.peg.224 CDS CP008984.1 209504 210325 2 + 822 D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) Polyhydroxybutyrate metabolism
fig|6666666.229936.peg.225 CDS CP008984.1 210328 211572 1 + 1245 Predicted pyridoxine biosynthesis protein (probably from glycolaldehide) - none -
fig|6666666.229936.peg.226 CDS CP008984.1 211569 212201 3 + 633 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases - none -
fig|6666666.229936.peg.227 CDS CP008984.1 212204 212980 2 + 777 Hydroxypyruvate isomerase (EC 5.3.1.22) Glycerate metabolism
fig|6666666.229936.peg.228 CDS CP008984.1 213134 213712 2 + 579 Lysophospholipase (EC 3.1.1.5) Triacylglycerol metabolism
fig|6666666.229936.peg.229 CDS CP008984.1 213673 214380 1 + 708 Lysophospholipase (EC 3.1.1.5) Triacylglycerol metabolism
fig|6666666.229936.peg.230 CDS CP008984.1 214576 215394 1 + 819 HMP-PP hydrolase (pyridoxal phosphatase) Cof, detected in genetic screen for thiamin metabolic genes (PMID:15292217) - none -
fig|6666666.229936.peg.231 CDS CP008984.1 218200 215600 -1 - 2601 DNA mismatch repair protein MutS DNA repair, bacterial MutL-MutS system;
DNA repair system including RecA, MutS and a hypothetical protein
fig|6666666.229936.peg.232 CDS CP008984.1 219331 218285 -1 - 1047 hypothetical protein - none -
fig|6666666.229936.peg.233 CDS CP008984.1 220273 219515 -1 - 759 rRNA small subunit methyltransferase J - none -
fig|6666666.229936.peg.234 CDS CP008984.1 221372 220275 -2 - 1098 tRNA (uracil(54)-C5)-methyltransferase (EC 2.1.1.35) RNA methylation;
tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229936.peg.235 CDS CP008984.1 221771 221442 -2 - 330 Protein yifE - none -
fig|6666666.229936.peg.236 CDS CP008984.1 222448 221831 -1 - 618 Periplasmic thiol:disulfide interchange protein DsbA Biogenesis of c-type cytochromes;
Periplasmic disulfide interchange
fig|6666666.229936.peg.237 CDS CP008984.1 222733 222467 -1 - 267 Protein yihD - none -
fig|6666666.229936.peg.238 CDS CP008984.1 222817 223401 1 + 585 Molybdopterin-guanine dinucleotide biosynthesis protein MobA Molybdenum cofactor biosynthesis;
ar-431-EC Molybdopterin-guanine dinucleotide biosynthesis
fig|6666666.229936.peg.239 CDS CP008984.1 223500 224030 3 + 531 ATPases involved in chromosome partitioning - none -
fig|6666666.229936.peg.240 CDS CP008984.1 224142 225671 3 + 1530 Fructose-specific phosphocarrier protein HPr (EC 2.7.1.69) / PTS system, fructose-specific IIA component (EC 2.7.1.69) Fructose utilization;
Fructose utilization
fig|6666666.229936.peg.241 CDS CP008984.1 225674 226615 2 + 942 1-phosphofructokinase (EC 2.7.1.56) Fructose utilization
fig|6666666.229936.peg.242 CDS CP008984.1 226620 228284 3 + 1665 PTS system, fructose-specific IIB component (EC 2.7.1.69) / PTS system, fructose-specific IIC component (EC 2.7.1.69) Fructose utilization;
Fructose utilization
fig|6666666.229936.peg.243 CDS CP008984.1 228913 228392 -1 - 522 LysR family regulatory protein CidR Murein hydrolase regulation and cell death
fig|6666666.229936.peg.244 CDS CP008984.1 228928 229479 1 + 552 NAD(P)H oxidoreductase YRKL (EC 1.6.99.-) @ Putative NADPH-quinone reductase (modulator of drug activity B) @ Flavodoxin 2 Flavodoxin;
Flavodoxin
fig|6666666.229936.peg.245 CDS CP008984.1 229519 229857 1 + 339 hypothetical protein - none -
fig|6666666.229936.peg.246 CDS CP008984.1 230003 230707 2 + 705 hypothetical protein - none -
fig|6666666.229936.peg.247 CDS CP008984.1 231149 231559 2 + 411 Preprotein translocase subunit SecE (TC 3.A.5.1.1) LSU ribosomal proteins cluster
fig|6666666.229936.peg.248 CDS CP008984.1 231561 232112 3 + 552 Transcription antitermination protein NusG LSU ribosomal proteins cluster;
Transcription factors bacterial
fig|6666666.229936.peg.249 CDS CP008984.1 232268 232696 2 + 429 LSU ribosomal protein L11p (L12e) LSU ribosomal proteins cluster
fig|6666666.229936.peg.250 CDS CP008984.1 232701 233390 3 + 690 LSU ribosomal protein L1p (L10Ae) LSU ribosomal proteins cluster
fig|6666666.229936.peg.251 CDS CP008984.1 233405 233581 2 + 177 hypothetical protein - none -
fig|6666666.229936.peg.252 CDS CP008984.1 233752 234243 1 + 492 LSU ribosomal protein L10p (P0) LSU ribosomal proteins cluster
fig|6666666.229936.peg.253 CDS CP008984.1 234295 234666 1 + 372 LSU ribosomal protein L7/L12 (P1/P2) LSU ribosomal proteins cluster
fig|6666666.229936.peg.254 CDS CP008984.1 234937 238965 1 + 4029 DNA-directed RNA polymerase beta subunit (EC 2.7.7.6) Mycobacterium virulence operon involved in DNA transcription;
RNA polymerase bacterial
fig|6666666.229936.peg.255 CDS CP008984.1 239068 243336 1 + 4269 DNA-directed RNA polymerase beta@1 subunit (EC 2.7.7.6) Mycobacterium virulence operon involved in DNA transcription;
RNA polymerase bacterial
fig|6666666.229936.peg.256 CDS CP008984.1 244357 244100 -1 - 258 SSU ribosomal protein S17p (S11e) - none -
fig|6666666.229936.peg.257 CDS CP008984.1 244548 244357 -3 - 192 LSU ribosomal protein L29p (L35e) - none -
fig|6666666.229936.peg.258 CDS CP008984.1 244958 244548 -2 - 411 LSU ribosomal protein L16p (L10e) - none -
fig|6666666.229936.peg.259 CDS CP008984.1 245679 244972 -3 - 708 SSU ribosomal protein S3p (S3e) - none -
fig|6666666.229936.peg.260 CDS CP008984.1 246028 245696 -1 - 333 LSU ribosomal protein L22p (L17e) - none -
fig|6666666.229936.peg.261 CDS CP008984.1 246248 246039 -2 - 210 SSU ribosomal protein S19p (S15e) - none -
fig|6666666.229936.peg.262 CDS CP008984.1 247161 246340 -3 - 822 LSU ribosomal protein L2p (L8e) - none -
fig|6666666.229936.peg.263 CDS CP008984.1 247484 247182 -2 - 303 LSU ribosomal protein L23p (L23Ae) - none -
fig|6666666.229936.peg.264 CDS CP008984.1 248083 247481 -1 - 603 LSU ribosomal protein L4p (L1e) - none -
fig|6666666.229936.peg.265 CDS CP008984.1 248725 248099 -1 - 627 LSU ribosomal protein L3p (L3e) - none -
fig|6666666.229936.peg.266 CDS CP008984.1 249053 248742 -2 - 312 SSU ribosomal protein S10p (S20e) - none -
fig|6666666.229936.peg.267 CDS CP008984.1 250199 249303 -2 - 897 Transcriptional regulators, LysR family - none -
fig|6666666.229936.peg.268 CDS CP008984.1 250473 251126 3 + 654 Acetyl-CoA:acetoacetyl-CoA transferase, alpha subunit (EC 2.8.3.8) - none -
fig|6666666.229936.peg.269 CDS CP008984.1 251138 251803 2 + 666 Acetyl-CoA:acetoacetyl-CoA transferase, beta subunit (EC 2.8.3.8) - none -
fig|6666666.229936.peg.270 CDS CP008984.1 251806 253149 1 + 1344 Short chain fatty acids transporter Polyhydroxybutyrate metabolism
fig|6666666.229936.peg.271 CDS CP008984.1 253167 254348 3 + 1182 Acetyl-CoA acetyltransferase (EC 2.3.1.9) Butanol Biosynthesis;
Isoprenoid Biosynthesis;
Polyhydroxybutyrate metabolism;
Serine-glyoxylate cycle
fig|6666666.229936.peg.272 CDS CP008984.1 254913 254446 -3 - 468 Transcriptional regulator, AsnC family - none -
fig|6666666.229936.peg.273 CDS CP008984.1 256533 255004 -3 - 1530 Arginine/ornithine antiporter ArcD Arginine Deiminase Pathway;
Arginine and Ornithine Degradation;
Polyamine Metabolism
fig|6666666.229936.peg.274 CDS CP008984.1 257582 256650 -2 - 933 Carbamate kinase (EC 2.7.2.2) Arginine Deiminase Pathway;
Arginine and Ornithine Degradation;
Polyamine Metabolism
fig|6666666.229936.peg.275 CDS CP008984.1 258596 257592 -2 - 1005 Ornithine carbamoyltransferase (EC 2.1.3.3) Arginine Deiminase Pathway;
Arginine and Ornithine Degradation
fig|6666666.229936.peg.276 CDS CP008984.1 258839 260230 2 + 1392 Chloride channel protein - none -
fig|6666666.229936.peg.277 CDS CP008984.1 260233 261216 1 + 984 tRNA dihydrouridine synthase A - none -
fig|6666666.229936.peg.278 CDS CP008984.1 262264 261272 -1 - 993 Aspartate--ammonia ligase (EC 6.3.1.1) CBSS-262728.1.peg.1737;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229936.peg.279 CDS CP008984.1 262430 262882 2 + 453 Regulatory protein AsnC CBSS-262728.1.peg.1737
fig|6666666.229936.peg.280 CDS CP008984.1 262916 263674 2 + 759 Uridine phosphorylase (EC 2.4.2.3) pyrimidine conversions
fig|6666666.229936.peg.281 CDS CP008984.1 264872 263811 -2 - 1062 Putative permease PerM (= YfgO) - none -
fig|6666666.229936.peg.282 CDS CP008984.1 264946 265296 1 + 351 Arsenate reductase (EC 1.20.4.1) Anaerobic respiratory reductases;
Arsenic resistance;
Transcription repair cluster
fig|6666666.229936.peg.283 CDS CP008984.1 265762 265400 -1 - 363 FIG00696564: hypothetical protein - none -
fig|6666666.229936.peg.284 CDS CP008984.1 265997 265713 -2 - 285 hypothetical protein - none -
fig|6666666.229936.peg.285 CDS CP008984.1 266206 267537 1 + 1332 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase Methylthiotransferases;
Ribosomal protein S12p Asp methylthiotransferase
fig|6666666.229936.peg.286 CDS CP008984.1 267662 268066 2 + 405 Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48) LMPTP YfkJ cluster;
Protein deglycation
fig|6666666.229936.peg.287 CDS CP008984.1 268193 268411 2 + 219 hypothetical protein - none -
fig|6666666.229936.peg.288 CDS CP008984.1 269079 268483 -3 - 597 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) G3E family of P-loop GTPases (metallocenter biosynthesis);
Peptidyl-prolyl cis-trans isomerase;
Potassium homeostasis
fig|6666666.229936.peg.289 CDS CP008984.1 269893 269174 -1 - 720 probable periplasmic protein NMA1059 - none -
fig|6666666.229936.peg.290 CDS CP008984.1 270378 269944 -3 - 435 Ribonuclease E inhibitor RraB RNA processing and degradation, bacterial
fig|6666666.229936.peg.291 CDS CP008984.1 270868 270473 -1 - 396 Large-conductance mechanosensitive channel Potassium homeostasis
fig|6666666.229936.peg.292 CDS CP008984.1 272354 270978 -2 - 1377 Trk system potassium uptake protein TrkA Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Hyperosmotic potassium uptake;
Potassium homeostasis;
Potassium homeostasis
fig|6666666.229936.peg.293 CDS CP008984.1 273733 272378 -1 - 1356 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) - none -
fig|6666666.229936.peg.294 CDS CP008984.1 274689 273733 -3 - 957 Methionyl-tRNA formyltransferase (EC 2.1.2.9) Conserved gene cluster associated with Met-tRNA formyltransferase;
Translation initiation factors bacterial
fig|6666666.229936.peg.295 CDS CP008984.1 275267 274755 -2 - 513 Peptide deformylase (EC 3.5.1.88) Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Translation termination factors bacterial
fig|6666666.229936.peg.296 CDS CP008984.1 281578 281021 -1 - 558 D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase (EC 3.1.1.-) Capsular heptose biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.229936.peg.297 CDS CP008984.1 281775 282812 3 + 1038 Methionine ABC transporter ATP-binding protein Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229936.peg.298 CDS CP008984.1 282802 283479 1 + 678 Methionine ABC transporter permease protein Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229936.peg.299 CDS CP008984.1 283514 284356 2 + 843 Methionine ABC transporter substrate-binding protein Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229936.peg.300 CDS CP008984.1 284462 284959 2 + 498 Phospholipid-binding protein - none -
fig|6666666.229936.peg.301 CDS CP008984.1 285078 285554 3 + 477 tRNA (cytidine(34)-2@1-O)-methyltransferase (EC 2.1.1.207) Biotin synthesis cluster;
RNA methylation
fig|6666666.229936.peg.302 CDS CP008984.1 286525 285650 -1 - 876 Membrane protein LAPB - none -
fig|6666666.229936.peg.303 CDS CP008984.1 286648 286535 -1 - 114 hypothetical protein - none -
fig|6666666.229936.peg.304 CDS CP008984.1 286658 287272 2 + 615 GTP-binding protein EngB Universal GTPases
fig|6666666.229936.peg.305 CDS CP008984.1 287387 288253 2 + 867 MG(2+) CHELATASE FAMILY PROTEIN CBSS-203122.12.peg.188
fig|6666666.229936.peg.306 CDS CP008984.1 288355 290004 1 + 1650 hypothetical protein - none -
fig|6666666.229936.peg.307 CDS CP008984.1 290091 289978 -3 - 114 hypothetical protein - none -
fig|6666666.229936.peg.308 CDS CP008984.1 291043 291939 1 + 897 Ribokinase (EC 2.7.1.15) D-ribose utilization;
Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.229936.peg.309 CDS CP008984.1 294003 293176 -3 - 828 Thermostable 8-oxoguanine DNA glycosylase - none -
fig|6666666.229936.peg.310 CDS CP008984.1 294678 294019 -3 - 660 Methyltransferase - none -
fig|6666666.229936.peg.311 CDS CP008984.1 295053 294934 -3 - 120 hypothetical protein - none -
fig|6666666.229936.peg.312 CDS CP008984.1 295094 295762 2 + 669 VgrG protein - none -
fig|6666666.229936.peg.313 CDS CP008984.1 295738 296217 1 + 480 VgrG protein - none -
fig|6666666.229936.peg.314 CDS CP008984.1 296252 297118 2 + 867 VgrG-3 protein - none -
fig|6666666.229936.peg.315 CDS CP008984.1 297474 299651 3 + 2178 FIG00850495: hypothetical protein - none -
fig|6666666.229936.peg.316 CDS CP008984.1 299672 300928 2 + 1257 Rhs-family protein - none -
fig|6666666.229936.peg.317 CDS CP008984.1 300932 301447 2 + 516 hypothetical protein - none -
fig|6666666.229936.peg.318 CDS CP008984.1 302025 302168 3 + 144 hypothetical protein - none -
fig|6666666.229936.peg.319 CDS CP008984.1 303086 302274 -2 - 813 Bll0873 protein - none -
fig|6666666.229936.peg.320 CDS CP008984.1 303678 303121 -3 - 558 Chromosome (plasmid) partitioning protein ParB Bacterial Cytoskeleton;
Cell Division Subsystem including YidCD;
RNA modification and chromosome partitioning cluster
fig|6666666.229936.peg.321 CDS CP008984.1 305491 303911 -1 - 1581 Recombinase - none -
fig|6666666.229936.peg.322 CDS CP008984.1 307734 306319 -3 - 1416 FIGfam110555 CBSS-203122.12.peg.188
fig|6666666.229936.peg.323 CDS CP008984.1 308849 307731 -2 - 1119 Mll9366 protein CBSS-203122.12.peg.188
fig|6666666.229936.peg.324 CDS CP008984.1 309700 308807 -1 - 894 TniB NTP-binding protein CBSS-203122.12.peg.188
fig|6666666.229936.peg.325 CDS CP008984.1 311619 309700 -3 - 1920 TniA putative transposase CBSS-203122.12.peg.188
fig|6666666.229936.peg.326 CDS CP008984.1 312274 311612 -1 - 663 FIGfam050825 CBSS-203122.12.peg.188
fig|6666666.229936.peg.327 CDS CP008984.1 312483 313115 3 + 633 MG(2+) CHELATASE FAMILY PROTEIN / ComM-related protein CBSS-203122.12.peg.188;
CBSS-203122.12.peg.188
fig|6666666.229936.peg.328 CDS CP008984.1 313954 313127 -1 - 828 Putative periplasmic protein YibQ, distant homology with nucleoside diphosphatase and polysaccharide deacetylase CBSS-224911.1.peg.435;
Phosphoglycerate mutase protein family
fig|6666666.229936.peg.329 CDS CP008984.1 315168 313951 -3 - 1218 Periplasmic septal ring factor with murein hydrolase activity EnvC/YibP CBSS-224911.1.peg.435;
Glutaredoxins;
Phosphoglycerate mutase protein family
fig|6666666.229936.peg.330 CDS CP008984.1 317077 315419 -1 - 1659 Phosphoglucosamine mutase (EC 5.4.2.10) Sialic Acid Metabolism;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229936.peg.331 CDS CP008984.1 317383 318066 1 + 684 Phosphoglycerate mutase (EC 5.4.2.1) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis;
Phosphoglycerate mutase protein family
fig|6666666.229936.peg.332 CDS CP008984.1 318645 318151 -3 - 495 Protein yfbU - none -
fig|6666666.229936.peg.333 CDS CP008984.1 319439 318663 -2 - 777 Nucleoside ABC transporter, periplasmic nucleoside-binding protein - none -
fig|6666666.229936.peg.334 CDS CP008984.1 321088 319505 -1 - 1584 Nickel ABC transporter, periplasmic nickel-binding protein NikA (TC 3.A.1.5.3) Transport of Nickel and Cobalt
fig|6666666.229936.peg.335 CDS CP008984.1 322485 321154 -3 - 1332 ATP-dependent hsl protease ATP-binding subunit HslU Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229936.peg.336 CDS CP008984.1 323033 322506 -2 - 528 ATP-dependent protease HslV (EC 3.4.25.-) Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229936.peg.337 CDS CP008984.1 323248 323955 1 + 708 NMN phosphatase (EC 3.1.3.5); Class B acid phosphatase precursor (EC 3.1.3.2) NAD and NADP cofactor biosynthesis global
fig|6666666.229936.peg.338 CDS CP008984.1 324654 324337 -3 - 318 hypothetical protein - none -
fig|6666666.229936.peg.339 CDS CP008984.1 326177 324933 -2 - 1245 Tryptophan-specific transport protein - none -
fig|6666666.229936.peg.340 CDS CP008984.1 326339 326866 2 + 528 Inorganic pyrophosphatase (EC 3.6.1.1) Phosphate metabolism
fig|6666666.229936.peg.341 CDS CP008984.1 326942 327715 2 + 774 Zn-dependent protease with chaperone function - none -
fig|6666666.229936.peg.342 CDS CP008984.1 328395 329039 3 + 645 3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster;
riboflavin to FAD
fig|6666666.229936.peg.343 CDS CP008984.1 330130 329126 -1 - 1005 Tryptophanyl-tRNA synthetase (EC 6.1.1.2) tRNA aminoacylation, Trp
fig|6666666.229936.peg.344 CDS CP008984.1 331666 330305 -1 - 1362 Signal recognition particle receptor protein FtsY (=alpha subunit) (TC 3.A.5.1.1) Bacterial Cell Division;
Bacterial signal recognition particle (SRP);
Universal GTPases
fig|6666666.229936.peg.345 CDS CP008984.1 331754 332338 2 + 585 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) CBSS-266117.6.peg.1260;
CBSS-269801.1.peg.1715;
RNA methylation
fig|6666666.229936.peg.346 CDS CP008984.1 332625 333590 3 + 966 PTS system, mannose-specific IIA component (EC 2.7.1.69) / PTS system, mannose-specific IIB component (EC 2.7.1.69) Mannose Metabolism;
Mannose Metabolism;
Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229936.peg.347 CDS CP008984.1 333608 334405 2 + 798 PTS system, mannose-specific IIC component - none -
fig|6666666.229936.peg.348 CDS CP008984.1 334419 335255 3 + 837 PTS system, mannose-specific IID component (EC 2.7.1.69) Mannose Metabolism;
Sialic Acid Metabolism
fig|6666666.229936.peg.349 CDS CP008984.1 335365 336540 1 + 1176 Cof protein - none -
fig|6666666.229936.peg.350 CDS CP008984.1 336832 338082 1 + 1251 Na+ dependent nucleoside transporter NupC Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.229936.peg.351 CDS CP008984.1 338208 338927 3 + 720 Purine nucleoside phosphorylase (EC 2.4.2.1) Adenosyl nucleosidases;
Deoxyribose and Deoxynucleoside Catabolism;
Purine conversions;
pyrimidine conversions
fig|6666666.229936.peg.352 CDS CP008984.1 338975 339088 2 + 114 hypothetical protein - none -
fig|6666666.229936.peg.353 CDS CP008984.1 339230 341617 2 + 2388 Biofilm PGA outer membrane secretin PgaA Biofilm Adhesin Biosynthesis
fig|6666666.229936.peg.354 CDS CP008984.1 341633 343549 2 + 1917 Biofilm PGA synthesis deacetylase PgaB (EC 3.-) Biofilm Adhesin Biosynthesis
fig|6666666.229936.peg.355 CDS CP008984.1 343558 344793 1 + 1236 Biofilm PGA synthesis N-glycosyltransferase PgaC (EC 2.4.-.-) Biofilm Adhesin Biosynthesis
fig|6666666.229936.peg.356 CDS CP008984.1 344796 345089 3 + 294 AagD - none -
fig|6666666.229936.peg.357 CDS CP008984.1 345192 345052 -3 - 141 hypothetical protein - none -
fig|6666666.229936.peg.358 CDS CP008984.1 346532 345207 -2 - 1326 Hexose phosphate uptake regulatory protein UhpC - none -
fig|6666666.229936.peg.359 CDS CP008984.1 346703 347335 2 + 633 Pyridoxamine 5@1-phosphate oxidase (EC 1.4.3.5) Pyridoxin (Vitamin B6) Biosynthesis
fig|6666666.229936.peg.360 CDS CP008984.1 348067 347423 -1 - 645 hypothetical protein - none -
fig|6666666.229936.peg.361 CDS CP008984.1 349980 348580 -3 - 1401 USG protein - none -
fig|6666666.229936.peg.362 CDS CP008984.1 351340 350039 -1 - 1302 Predicted ATPase (AAA+ superfamily) - none -
fig|6666666.229936.peg.363 CDS CP008984.1 353142 351811 -3 - 1332 ATP-dependent RNA helicase SrmB - none -
fig|6666666.229936.peg.364 CDS CP008984.1 353129 353257 2 + 129 hypothetical protein - none -
fig|6666666.229936.peg.365 CDS CP008984.1 353241 353939 3 + 699 tRNA (adenine37-N(6))-methyltransferase TrmN6 (EC 2.1.1.223) RNA methylation
fig|6666666.229936.peg.366 CDS CP008984.1 354703 354014 -1 - 690 Ribosyl nicotinamide transporter, PnuC-like NAD and NADP cofactor biosynthesis global
fig|6666666.229936.peg.367 CDS CP008984.1 355084 355743 1 + 660 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses;
Ribosome biogenesis bacterial;
tRNA modification Bacteria
fig|6666666.229936.peg.368 CDS CP008984.1 355892 355740 -2 - 153 hypothetical protein - none -
fig|6666666.229936.peg.369 CDS CP008984.1 356568 356062 -3 - 507 S-ribosylhomocysteine lyase (EC 4.4.1.21) / Autoinducer-2 production protein LuxS Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon);
Methionine Biosynthesis;
Methionine Degradation
fig|6666666.229936.peg.370 CDS CP008984.1 357267 356782 -3 - 486 Putative membrane protein - none -
fig|6666666.229936.peg.371 CDS CP008984.1 357875 357270 -2 - 606 Galactoside O-acetyltransferase (EC 2.3.1.18) Lactose utilization
fig|6666666.229936.peg.372 CDS CP008984.1 358477 357875 -1 - 603 Putative phosphatase YqaB 2-phosphoglycolate salvage
fig|6666666.229936.peg.373 CDS CP008984.1 358606 358986 1 + 381 FIG00782409: hypothetical protein - none -
fig|6666666.229936.peg.374 CDS CP008984.1 361517 359502 -2 - 2016 ATP-dependent DNA helicase Rep DNA repair, bacterial UvrD and related helicases
fig|6666666.229936.peg.375 CDS CP008984.1 361757 361527 -2 - 231 FIG00696102: hypothetical protein - none -
fig|6666666.229936.peg.376 CDS CP008984.1 362424 361861 -3 - 564 Outer membrane protein 18/16 - none -
fig|6666666.229936.peg.377 CDS CP008984.1 362641 365442 1 + 2802 DNA polymerase I (EC 2.7.7.7) DNA Repair Base Excision
fig|6666666.229936.peg.378 CDS CP008984.1 365457 365579 3 + 123 hypothetical protein - none -
fig|6666666.229936.peg.379 CDS CP008984.1 365829 366230 3 + 402 hypothetical protein - none -
fig|6666666.229936.peg.380 CDS CP008984.1 368095 366281 -1 - 1815 5@1-nucleotidase (EC 3.1.3.5); NAD pyrophosphatase, periplasmic (EC 3.6.1.22) Purine conversions;
pyrimidine conversions
fig|6666666.229936.peg.381 CDS CP008984.1 368898 368122 -3 - 777 Protein HI0205 precursor - none -
fig|6666666.229936.peg.382 CDS CP008984.1 369155 369036 -2 - 120 hypothetical protein - none -
fig|6666666.229936.peg.383 CDS CP008984.1 369177 370103 3 + 927 ADP-L-glycero-D-manno-heptose-6-epimerase (EC 5.1.3.20) LOS core oligosaccharide biosynthesis
fig|6666666.229936.peg.384 CDS CP008984.1 370273 371400 1 + 1128 Fic family protein - none -
fig|6666666.229936.peg.385 CDS CP008984.1 371420 372463 2 + 1044 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) LOS core oligosaccharide biosynthesis
fig|6666666.229936.peg.386 CDS CP008984.1 372581 374476 2 + 1896 Glutathionylspermidine synthase (EC 6.3.1.8) / Glutathionylspermidine amidohydrolase (EC 3.5.1.78) Glutathionylspermidine and Trypanothione;
Glutathionylspermidine and Trypanothione
fig|6666666.229936.peg.387 CDS CP008984.1 375197 374562 -2 - 636 Cytochrome c-type protein NapC - none -
fig|6666666.229936.peg.388 CDS CP008984.1 375660 375211 -3 - 450 Nitrate reductase cytochrome c550-type subunit - none -
fig|6666666.229936.peg.389 CDS CP008984.1 376579 375698 -1 - 882 Polyferredoxin NapH (periplasmic nitrate reductase) - none -
fig|6666666.229936.peg.390 CDS CP008984.1 377418 376579 -3 - 840 Ferredoxin-type protein NapG (periplasmic nitrate reductase) - none -
fig|6666666.229936.peg.391 CDS CP008984.1 379952 377466 -2 - 2487 Periplasmic nitrate reductase precursor (EC 1.7.99.4) - none -
fig|6666666.229936.peg.392 CDS CP008984.1 380270 379986 -2 - 285 Periplasmic nitrate reductase component NapD - none -
fig|6666666.229936.peg.393 CDS CP008984.1 380500 380336 -1 - 165 hypothetical protein - none -
fig|6666666.229936.peg.394 CDS CP008984.1 380546 382249 2 + 1704 Nitrate/nitrite sensor protein (EC 2.7.3.-) - none -
fig|6666666.229936.peg.395 CDS CP008984.1 382264 383289 1 + 1026 UDP-N-acetylenolpyruvoylglucosamine reductase (EC 1.1.1.158) Peptidoglycan Biosynthesis;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229936.peg.396 CDS CP008984.1 383305 383619 1 + 315 Uncharacterized protein conserved in bacteria - none -
fig|6666666.229936.peg.397 CDS CP008984.1 383804 384652 2 + 849 RNA polymerase sigma factor RpoH Heat shock dnaK gene cluster extended;
Transcription initiation, bacterial sigma factors
fig|6666666.229936.peg.398 CDS CP008984.1 385246 384719 -1 - 528 DNA transformation protein TfoX CBSS-83333.1.peg.946;
Orphan regulatory proteins
fig|6666666.229936.peg.399 CDS CP008984.1 387826 386642 -1 - 1185 Translation elongation factor Tu Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Translation elongation factors bacterial;
Universal GTPases
fig|6666666.229936.peg.400 CDS CP008984.1 389992 387890 -1 - 2103 Translation elongation factor G Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Translation elongation factor G family;
Translation elongation factors bacterial;
Universal GTPases
fig|6666666.229936.peg.401 CDS CP008984.1 390577 390107 -1 - 471 SSU ribosomal protein S7p (S5e) Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins)
fig|6666666.229936.peg.402 CDS CP008984.1 390867 390730 -3 - 138 SSU ribosomal protein S12p (S23e) Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Ribosomal protein S12p Asp methylthiotransferase
fig|6666666.229936.peg.403 CDS CP008984.1 391162 391046 -1 - 117 SSU ribosomal protein S12p (S23e) Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Ribosomal protein S12p Asp methylthiotransferase
fig|6666666.229936.peg.404 CDS CP008984.1 391625 391326 -2 - 300 Ketol-acid reductoisomerase (EC 1.1.1.86) Coenzyme A Biosynthesis
fig|6666666.229936.peg.405 CDS CP008984.1 392257 392442 1 + 186 HTH-type transcriptional regulator IlvY Alanine biosynthesis;
LysR-family proteins in Escherichia coli;
LysR-family proteins in Salmonella enterica Typhimurium
fig|6666666.229936.peg.406 CDS CP008984.1 392475 393356 3 + 882 Protein rarD - none -
fig|6666666.229936.peg.407 CDS CP008984.1 394151 393351 -2 - 801 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) Chorismate Synthesis;
Cluster containing Alanyl-tRNA synthetase;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229936.peg.408 CDS CP008984.1 394706 394155 -2 - 552 TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA - none -
fig|6666666.229936.peg.409 CDS CP008984.1 395259 394711 -3 - 549 Similar to C-terminal Zn-finger domain of DNA topoisomerase I Conserved gene cluster associated with Met-tRNA formyltransferase;
DNA topoisomerases, Type I, ATP-independent
fig|6666666.229936.peg.410 CDS CP008984.1 395262 397016 3 + 1755 DNA recombination protein RmuC DNA repair, bacterial
fig|6666666.229936.peg.411 CDS CP008984.1 397141 397689 1 + 549 FIG00903983: hypothetical protein - none -
fig|6666666.229936.peg.412 CDS CP008984.1 397701 398027 3 + 327 Thiosulfate sulfurtransferase GlpE (EC 2.8.1.1) Single-Rhodanese-domain proteins
fig|6666666.229936.peg.413 CDS CP008984.1 398353 398039 -1 - 315 Uncharacterized protein PM1437 - none -
fig|6666666.229936.peg.414 CDS CP008984.1 398396 399271 2 + 876 GlpG protein (membrane protein of glp regulon) - none -
fig|6666666.229936.peg.415 CDS CP008984.1 399333 400088 3 + 756 Glycerol-3-phosphate regulon repressor GlpR - none -
fig|6666666.229936.peg.416 CDS CP008984.1 400432 403158 1 + 2727 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229936.peg.417 CDS CP008984.1 405564 403747 -3 - 1818 ABC transporter ATP-binding protein - none -
fig|6666666.229936.peg.418 CDS CP008984.1 405688 407346 1 + 1659 Mediator of hyperadherence YidE - none -
fig|6666666.229936.peg.419 CDS CP008984.1 407445 407314 -3 - 132 hypothetical protein - none -
fig|6666666.229936.peg.420 CDS CP008984.1 407503 408216 1 + 714 Uridine monophosphate kinase (EC 2.7.4.22) CBSS-312309.3.peg.1965;
Ribosome recycling related cluster
fig|6666666.229936.peg.421 CDS CP008984.1 408284 408427 2 + 144 hypothetical protein - none -
fig|6666666.229936.peg.422 CDS CP008984.1 408441 408998 3 + 558 Ribosome recycling factor Ribosome recycling related cluster;
Translation termination factors bacterial
fig|6666666.229936.peg.423 CDS CP008984.1 409027 410310 1 + 1284 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.267) CBSS-83331.1.peg.3039;
Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.229936.peg.424 CDS CP008984.1 410332 411051 1 + 720 Undecaprenyl diphosphate synthase (EC 2.5.1.31) CBSS-83331.1.peg.3039;
Isoprenoid Biosynthesis;
Isoprenoinds for Quinones;
Polyprenyl Diphosphate Biosynthesis
fig|6666666.229936.peg.425 CDS CP008984.1 411066 411935 3 + 870 Phosphatidate cytidylyltransferase (EC 2.7.7.41) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229936.peg.426 CDS CP008984.1 411944 413278 2 + 1335 Membrane-associated zinc metalloprotease - none -
fig|6666666.229936.peg.427 CDS CP008984.1 413297 415708 2 + 2412 Outer membrane protein assembly factor YaeT precursor Lipopolysaccharide assembly;
Llipid A biosynthesis cluster
fig|6666666.229936.peg.428 CDS CP008984.1 415811 416386 2 + 576 Outer membrane chaperone Skp (OmpH) precursor @ Outer membrane protein H precursor Lipopolysaccharide assembly;
Llipid A biosynthesis cluster;
Periplasmic Stress Response
fig|6666666.229936.peg.429 CDS CP008984.1 416386 417408 1 + 1023 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC 2.3.1.191) - none -
fig|6666666.229936.peg.430 CDS CP008984.1 417545 417955 2 + 411 3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabZ form (EC 4.2.1.59) Fatty Acid Biosynthesis FASII;
Llipid A biosynthesis cluster
fig|6666666.229936.peg.431 CDS CP008984.1 417976 418764 1 + 789 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase (EC 2.3.1.129) KDO2-Lipid A biosynthesis;
Llipid A biosynthesis cluster
fig|6666666.229936.peg.432 CDS CP008984.1 418849 420033 1 + 1185 Lipid-A-disaccharide synthase (EC 2.4.1.182) KDO2-Lipid A biosynthesis;
Llipid A biosynthesis cluster
fig|6666666.229936.peg.433 CDS CP008984.1 420026 420625 2 + 600 Ribonuclease HII (EC 3.1.26.4) Conserved gene cluster associated with Met-tRNA formyltransferase;
Ribonuclease H
fig|6666666.229936.peg.434 CDS CP008984.1 420665 422101 2 + 1437 Transporter - none -
fig|6666666.229936.peg.435 CDS CP008984.1 422101 423030 1 + 930 Phosphatidate cytidylyltransferase (EC 2.7.7.41) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229936.peg.436 CDS CP008984.1 423120 423701 3 + 582 Molybdopterin biosynthesis molybdochelatase MogA Molybdenum cofactor biosynthesis
fig|6666666.229936.peg.437 CDS CP008984.1 430902 430699 -3 - 204 Osmotically inducible lipoprotein B precursor Osmotic stress cluster
fig|6666666.229936.peg.438 CDS CP008984.1 431921 430989 -2 - 933 Biotin operon repressor / Biotin-protein ligase (EC 6.3.4.15) Biotin biosynthesis;
Biotin biosynthesis;
Biotin synthesis cluster;
Biotin synthesis cluster
fig|6666666.229936.peg.439 CDS CP008984.1 432063 433529 3 + 1467 Inosine-5@1-monophosphate dehydrogenase (EC 1.1.1.205) Purine conversions;
Purine salvage cluster
fig|6666666.229936.peg.440 CDS CP008984.1 433824 433988 3 + 165 hypothetical protein - none -
fig|6666666.229936.peg.441 CDS CP008984.1 434710 434261 -1 - 450 ImpA - none -
fig|6666666.229936.peg.442 CDS CP008984.1 435254 435889 2 + 636 DNA polymerase IV (EC 2.7.7.7) DNA repair, bacterial
fig|6666666.229936.peg.443 CDS CP008984.1 436059 436886 3 + 828 Dihydropteroate synthase (EC 2.5.1.15) Folate Biosynthesis;
Folate biosynthesis cluster
fig|6666666.229936.peg.444 CDS CP008984.1 436915 438252 1 + 1338 Phosphoglucosamine mutase (EC 5.4.2.10) Sialic Acid Metabolism;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229936.peg.445 CDS CP008984.1 438265 438732 1 + 468 Phosphohistidine phosphatase SixA - none -
fig|6666666.229936.peg.446 CDS CP008984.1 438956 439501 2 + 546 FIG00696317: hypothetical protein - none -
fig|6666666.229936.peg.447 CDS CP008984.1 440185 439523 -1 - 663 Septum site-determining protein MinC Bacterial Cell Division;
Bacterial Cytoskeleton;
Septum site-determining cluster Min
fig|6666666.229936.peg.448 CDS CP008984.1 440269 440520 1 + 252 Protein YcgL CBSS-243277.1.peg.4359
fig|6666666.229936.peg.449 CDS CP008984.1 441426 440917 -3 - 510 probable lipoprotein NlpC - none -
fig|6666666.229936.peg.450 CDS CP008984.1 442460 441606 -2 - 855 2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase (EC 2.5.1.55) A Gammaproteobacteria Cluster Relating to Translation;
KDO2-Lipid A biosynthesis
fig|6666666.229936.peg.451 CDS CP008984.1 443369 442470 -2 - 900 Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2 A Gammaproteobacteria Cluster Relating to Translation;
CBSS-216600.3.peg.802;
Translation termination factors bacterial;
YrdC-YciO-Sua5 protein family
fig|6666666.229936.peg.452 CDS CP008984.1 444491 443409 -2 - 1083 Peptide chain release factor 1 A Gammaproteobacteria Cluster Relating to Translation;
CBSS-216600.3.peg.802;
Translation termination factors bacterial;
YrdC-YciO-Sua5 protein family
fig|6666666.229936.peg.453 CDS CP008984.1 445086 444631 -3 - 456 Outer membrane lipoprotein - none -
fig|6666666.229936.peg.454 CDS CP008984.1 445715 445128 -2 - 588 Protein yecM - none -
fig|6666666.229936.peg.455 CDS CP008984.1 445812 447545 3 + 1734 Arginyl-tRNA synthetase (EC 6.1.1.19) tRNA aminoacylation, Arg
fig|6666666.229936.peg.456 CDS CP008984.1 449338 447905 -1 - 1434 Putative GTP-binding protein YdgA - none -
fig|6666666.229936.peg.457 CDS CP008984.1 449624 451525 2 + 1902 Chaperone protein DnaK GroEL GroES;
Heat shock dnaK gene cluster extended;
Protein chaperones
fig|6666666.229936.peg.458 CDS CP008984.1 451959 453086 3 + 1128 Chaperone protein DnaJ GroEL GroES;
Heat shock dnaK gene cluster extended;
Protein chaperones
fig|6666666.229936.peg.459 CDS CP008984.1 453391 453164 -1 - 228 Programmed cell death toxin ChpB - none -
fig|6666666.229936.peg.460 CDS CP008984.1 454587 453535 -3 - 1053 Outer membrane protein P2 precursor (OMP P2) - none -
fig|6666666.229936.peg.461 CDS CP008984.1 455991 454801 -3 - 1191 Cystathionine beta-lyase (EC 4.4.1.8) Methionine Biosynthesis
fig|6666666.229936.peg.462 CDS CP008984.1 456246 456803 3 + 558 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229936.peg.463 CDS CP008984.1 457325 457603 2 + 279 Chromosome partitioning ATPase in PFGI-1-like cluster, ParA-like - none -
fig|6666666.229936.peg.464 CDS CP008984.1 458630 458070 -2 - 561 Cytolethal distending toxin subunit C Cytolethal distending toxin of Campylobacter jejuni;
Cytolethal distending toxins
fig|6666666.229936.peg.465 CDS CP008984.1 459492 458641 -3 - 852 Cytolethal distending toxin subunit B Cytolethal distending toxin of Campylobacter jejuni;
Cytolethal distending toxins
fig|6666666.229936.peg.466 CDS CP008984.1 460175 459507 -2 - 669 Cytolethal distending toxin subunit A Cytolethal distending toxin of Campylobacter jejuni;
Cytolethal distending toxins
fig|6666666.229936.peg.467 CDS CP008984.1 460660 460394 -1 - 267 Virulence plasmid protein - none -
fig|6666666.229936.peg.468 CDS CP008984.1 461088 460744 -3 - 345 Programmed cell death toxin MazF - none -
fig|6666666.229936.peg.469 CDS CP008984.1 461345 461091 -2 - 255 hypothetical protein - none -
fig|6666666.229936.peg.470 CDS CP008984.1 462634 461936 -1 - 699 NAD-dependent protein deacetylase of SIR2 family Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229936.peg.471 CDS CP008984.1 463297 462650 -1 - 648 Glutaredoxin 2 Glutaredoxins;
Glutathione: Redox cycle
fig|6666666.229936.peg.472 CDS CP008984.1 464889 463414 -3 - 1476 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) Bacterial Cell Division;
CBSS-354.1.peg.2917;
RNA processing and degradation, bacterial
fig|6666666.229936.peg.473 CDS CP008984.1 465028 466548 1 + 1521 Proline/sodium symporter PutP (TC 2.A.21.2.1) @ Propionate/sodium symporter - none -
fig|6666666.229936.peg.474 CDS CP008984.1 466562 467527 2 + 966 tRNA (5-methoxyuridine) 34 synthase tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229936.peg.475 CDS CP008984.1 467615 468913 2 + 1299 Adenylosuccinate synthetase (EC 6.3.4.4) Purine conversions
fig|6666666.229936.peg.476 CDS CP008984.1 469268 468978 -2 - 291 hypothetical protein - none -
fig|6666666.229936.peg.477 CDS CP008984.1 470274 469291 -3 - 984 DnaJ-class molecular chaperone CbpA Protein chaperones
fig|6666666.229936.peg.478 CDS CP008984.1 470562 472094 3 + 1533 GTP-binding protein EngA CBSS-290633.1.peg.1906;
CBSS-498211.3.peg.1415;
Universal GTPases
fig|6666666.229936.peg.479 CDS CP008984.1 473360 472164 -2 - 1197 Sugar efflux transporter SotB - none -
fig|6666666.229936.peg.480 CDS CP008984.1 474564 473362 -3 - 1203 FIG00696476: hypothetical protein - none -
fig|6666666.229936.peg.481 CDS CP008984.1 475149 474565 -3 - 585 Deoxycytidine triphosphate deaminase (EC 3.5.4.13) pyrimidine conversions
fig|6666666.229936.peg.482 CDS CP008984.1 475809 475159 -3 - 651 Uridine kinase (EC 2.7.1.48) [C1] pyrimidine conversions
fig|6666666.229936.peg.483 CDS CP008984.1 476118 477158 3 + 1041 Ferric iron ABC transporter, iron-binding protein Iron acquisition in Streptococcus
fig|6666666.229936.peg.484 CDS CP008984.1 477611 478363 2 + 753 Ferric iron ABC transporter, iron-binding protein Iron acquisition in Streptococcus
fig|6666666.229936.peg.485 CDS CP008984.1 478391 480448 2 + 2058 Ferric iron ABC transporter, permease protein Iron acquisition in Streptococcus
fig|6666666.229936.peg.486 CDS CP008984.1 480464 481510 2 + 1047 Fe(3+) ions import ATP-binding protein fbpC (EC 3.6.3.30) - none -
fig|6666666.229936.peg.487 CDS CP008984.1 481789 483900 1 + 2112 unknown - none -
fig|6666666.229936.peg.488 CDS CP008984.1 484753 483953 -1 - 801 Inositol-1-monophosphatase (EC 3.1.3.25) - none -
fig|6666666.229936.peg.489 CDS CP008984.1 484904 485644 2 + 741 tRNA:Cm32/Um32 methyltransferase RNA methylation;
tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229936.peg.490 CDS CP008984.1 485706 486179 3 + 474 Iron-sulfur cluster regulator IscR Alanine biosynthesis;
Rrf2 family transcriptional regulators
fig|6666666.229936.peg.491 CDS CP008984.1 486233 487447 2 + 1215 Cysteine desulfurase (EC 2.8.1.7), IscS subfamily Alanine biosynthesis;
Thiamin biosynthesis;
mnm5U34 biosynthesis bacteria;
tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229936.peg.492 CDS CP008984.1 487507 487890 1 + 384 Iron-sulfur cluster assembly scaffold protein IscU Alanine biosynthesis;
tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229936.peg.493 CDS CP008984.1 488022 488345 3 + 324 Iron binding protein IscA for iron-sulfur cluster assembly Alanine biosynthesis;
tRNA modification Bacteria
fig|6666666.229936.peg.494 CDS CP008984.1 488357 488878 2 + 522 Chaperone protein HscB Protein chaperones;
tRNA modification Bacteria
fig|6666666.229936.peg.495 CDS CP008984.1 488899 490749 1 + 1851 Chaperone protein HscA Alanine biosynthesis;
Protein chaperones;
tRNA modification Bacteria
fig|6666666.229936.peg.496 CDS CP008984.1 490761 491102 3 + 342 Ferredoxin, 2Fe-2S Alanine biosynthesis;
Soluble cytochromes and functionally related electron carriers;
tRNA modification Bacteria
fig|6666666.229936.peg.497 CDS CP008984.1 491102 491296 2 + 195 Believed to be involved in assembly of Fe-S clusters tRNA modification Bacteria
fig|6666666.229936.peg.498 CDS CP008984.1 493490 491430 -2 - 2061 Methionyl-tRNA synthetase (EC 6.1.1.10) Scaffold proteins for [4Fe-4S] cluster assembly (MRP family);
tRNA aminoacylation, Met
fig|6666666.229936.peg.499 CDS CP008984.1 493663 494775 1 + 1113 Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like Scaffold proteins for [4Fe-4S] cluster assembly (MRP family)
fig|6666666.229936.peg.500 CDS CP008984.1 494872 494753 -1 - 120 hypothetical protein - none -
fig|6666666.229936.peg.501 CDS CP008984.1 496010 494865 -2 - 1146 Beta-hexosaminidase (EC 3.2.1.52) Chitin and N-acetylglucosamine utilization
fig|6666666.229936.peg.502 CDS CP008984.1 496571 496146 -2 - 426 Nucleoside diphosphate kinase (EC 2.7.4.6) CBSS-498211.3.peg.1415;
Purine conversions;
pyrimidine conversions
fig|6666666.229936.peg.503 CDS CP008984.1 497890 496583 -1 - 1308 Peptidase B (EC 3.4.11.23) Aminopeptidases (EC 3.4.11.-)
fig|6666666.229936.peg.504 CDS CP008984.1 498110 498328 2 + 219 Translation initiation factor 1 Translation initiation factors bacterial
fig|6666666.229936.peg.505 CDS CP008984.1 499935 498391 -3 - 1545 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE Copper homeostasis: copper tolerance;
Lipoprotein Biosynthesis;
tRNA-methylthiotransferase containing cluster;
tRNA-methylthiotransferase containing cluster
fig|6666666.229936.peg.506 CDS CP008984.1 501225 500329 -3 - 897 Magnesium and cobalt efflux protein CorC CBSS-56780.10.peg.1536;
Copper homeostasis: copper tolerance;
Glycyl-tRNA synthetase containing cluster;
Magnesium transport;
tRNA-methylthiotransferase containing cluster
fig|6666666.229936.peg.507 CDS CP008984.1 501305 501433 2 + 129 hypothetical protein - none -
fig|6666666.229936.peg.508 CDS CP008984.1 501471 502478 3 + 1008 [Citrate [pro-3S]-lyase] ligase (EC 6.2.1.22) Citrate Metabolism, Transport, and Regulation
fig|6666666.229936.peg.509 CDS CP008984.1 502518 502805 3 + 288 Citrate lyase gamma chain, acyl carrier protein (EC 4.1.3.6) Citrate Metabolism, Transport, and Regulation;
TCA Cycle
fig|6666666.229936.peg.510 CDS CP008984.1 502802 503677 2 + 876 Citrate lyase beta chain (EC 4.1.3.6) Citrate Metabolism, Transport, and Regulation
fig|6666666.229936.peg.511 CDS CP008984.1 503692 505194 1 + 1503 Citrate lyase alpha chain (EC 4.1.3.6) Citrate Metabolism, Transport, and Regulation
fig|6666666.229936.peg.512 CDS CP008984.1 505388 506800 2 + 1413 2-(5@1@1-triphosphoribosyl)-3@1-dephosphocoenzyme-A synthase (EC 2.7.8.25) Citrate Metabolism, Transport, and Regulation
fig|6666666.229936.peg.513 CDS CP008984.1 506787 508220 3 + 1434 2-oxoglutarate/malate translocator - none -
fig|6666666.229936.peg.514 CDS CP008984.1 508499 509998 2 + 1500 Putative ATP /GTP binding protein - none -
fig|6666666.229936.peg.515 CDS CP008984.1 511294 510263 -1 - 1032 Aldose 1-epimerase (EC 5.1.3.3) Lactose and Galactose Uptake and Utilization;
Maltose and Maltodextrin Utilization
fig|6666666.229936.peg.516 CDS CP008984.1 512442 511288 -3 - 1155 Galactokinase (EC 2.7.1.6) Lactose and Galactose Uptake and Utilization
fig|6666666.229936.peg.517 CDS CP008984.1 513552 512509 -3 - 1044 Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10) Lactose and Galactose Uptake and Utilization
fig|6666666.229936.peg.518 CDS CP008984.1 513804 514817 3 + 1014 Galactose operon repressor, GalR-LacI family of transcriptional regulators Lactose and Galactose Uptake and Utilization
fig|6666666.229936.peg.519 CDS CP008984.1 515032 516024 1 + 993 Galactose/methyl galactoside ABC transport system, D-galactose-binding periplasmic protein MglB (TC 3.A.1.2.3) Bacterial Chemotaxis;
Lactose and Galactose Uptake and Utilization
fig|6666666.229936.peg.520 CDS CP008984.1 516099 516446 3 + 348 Galactose/methyl galactoside ABC transport system, ATP-binding protein MglA (EC 3.6.3.17) Lactose and Galactose Uptake and Utilization
fig|6666666.229936.peg.521 CDS CP008984.1 516477 517637 3 + 1161 Galactose/methyl galactoside ABC transport system, ATP-binding protein MglA (EC 3.6.3.17) Lactose and Galactose Uptake and Utilization
fig|6666666.229936.peg.522 CDS CP008984.1 517656 518666 3 + 1011 Galactose/methyl galactoside ABC transport system, permease protein MglC (TC 3.A.1.2.3) Lactose and Galactose Uptake and Utilization
fig|6666666.229936.peg.523 CDS CP008984.1 520587 518740 -3 - 1848 Aerobic respiration control sensor protein arcB (EC 2.7.3.-) - none -
fig|6666666.229936.peg.524 CDS CP008984.1 520613 520747 2 + 135 hypothetical protein - none -
fig|6666666.229936.peg.525 CDS CP008984.1 521948 520728 -2 - 1221 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41) Fatty Acid Biosynthesis FASII
fig|6666666.229936.peg.526 CDS CP008984.1 522118 524136 1 + 2019 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) CBSS-354.1.peg.876;
RNA methylation;
Riboflavin, FMN and FAD metabolism in plants;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229936.peg.527 CDS CP008984.1 524326 527397 1 + 3072 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229936.peg.528 CDS CP008984.1 528086 527508 -2 - 579 Heat shock protein GrpE GroEL GroES;
Heat shock dnaK gene cluster extended;
Protein chaperones
fig|6666666.229936.peg.529 CDS CP008984.1 528054 528182 3 + 129 hypothetical protein - none -
fig|6666666.229936.peg.530 CDS CP008984.1 528227 529144 2 + 918 NAD kinase (EC 2.7.1.23) NAD and NADP cofactor biosynthesis global
fig|6666666.229936.peg.531 CDS CP008984.1 529218 530894 3 + 1677 DNA repair protein RecN DNA repair, bacterial
fig|6666666.229936.peg.532 CDS CP008984.1 531559 530912 -1 - 648 Outer membrane protein W precursor - none -
fig|6666666.229936.peg.533 CDS CP008984.1 531645 531797 3 + 153 hypothetical protein - none -
fig|6666666.229936.peg.534 CDS CP008984.1 531831 532589 3 + 759 Membrane protein involved in the export of O-antigen and teichoic acid - none -
fig|6666666.229936.peg.535 CDS CP008984.1 532595 533146 2 + 552 Intracellular septation protein IspA CBSS-211586.9.peg.2729;
Intracellular septation in Enterobacteria
fig|6666666.229936.peg.536 CDS CP008984.1 533150 533620 2 + 471 Acyl-CoA thioesterase YciA, involved in membrane biogenesis CBSS-211586.9.peg.2729;
Intracellular septation in Enterobacteria
fig|6666666.229936.peg.537 CDS CP008984.1 533623 533919 1 + 297 YciL protein Broadly distributed proteins not in subsystems;
CBSS-211586.9.peg.2729
fig|6666666.229936.peg.538 CDS CP008984.1 534446 536662 2 + 2217 Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) Murein Hydrolases
fig|6666666.229936.peg.539 CDS CP008984.1 536695 537003 1 + 309 Transcriptional repressor protein TrpR Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate);
Tryptophan synthesis
fig|6666666.229936.peg.540 CDS CP008984.1 536981 537754 2 + 774 Monofunctional biosynthetic peptidoglycan transglycosylase (EC 2.4.2.-) Peptidoglycan Biosynthesis
fig|6666666.229936.peg.541 CDS CP008984.1 538265 538011 -2 - 255 hypothetical protein - none -
fig|6666666.229936.peg.542 CDS CP008984.1 539069 538848 -2 - 222 hypothetical protein - none -
fig|6666666.229936.peg.543 CDS CP008984.1 539341 539150 -1 - 192 hypothetical protein - none -
fig|6666666.229936.peg.544 CDS CP008984.1 539486 539346 -2 - 141 hypothetical protein - none -
fig|6666666.229936.peg.545 CDS CP008984.1 540438 540100 -3 - 339 Preprotein translocase subunit SecG (TC 3.A.5.1.1) CBSS-331978.3.peg.2915;
Murein hydrolase regulation and cell death
fig|6666666.229936.peg.546 CDS CP008984.1 542548 540611 -1 - 1938 DNA topoisomerase III (EC 5.99.1.2) DNA processing cluster;
DNA topoisomerases, Type I, ATP-independent
fig|6666666.229936.peg.547 CDS CP008984.1 543182 542580 -2 - 603 Recombination protein RecR DNA processing cluster;
DNA repair, bacterial RecFOR pathway
fig|6666666.229936.peg.548 CDS CP008984.1 543710 543267 -2 - 444 FIG000557: hypothetical protein co-occurring with RecR DNA processing cluster
fig|6666666.229936.peg.549 CDS CP008984.1 543781 544851 1 + 1071 Phosphoesterase (EC 3.1.-.-) - none -
fig|6666666.229936.peg.550 CDS CP008984.1 544921 545814 1 + 894 Iron(III) dicitrate transport system, periplasmic iron-binding protein FecB (TC 3.A.1.14.1) - none -
fig|6666666.229936.peg.551 CDS CP008984.1 545814 546803 3 + 990 Iron(III) dicitrate transport system permease protein FecC (TC 3.A.1.14.1) - none -
fig|6666666.229936.peg.552 CDS CP008984.1 546803 547786 2 + 984 Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1) - none -
fig|6666666.229936.peg.553 CDS CP008984.1 547786 548553 1 + 768 Iron(III) dicitrate transport ATP-binding protein FecE (TC 3.A.1.14.1) - none -
fig|6666666.229936.peg.554 CDS CP008984.1 549590 548619 -2 - 972 Translation elongation factor P Lys34:lysine transferase Translation elongation factor P lysylation
fig|6666666.229936.peg.555 CDS CP008984.1 549654 549842 3 + 189 hypothetical protein - none -
fig|6666666.229936.peg.556 CDS CP008984.1 549898 551706 1 + 1809 Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) Serine-glyoxylate cycle;
Succinate dehydrogenase;
TCA Cycle
fig|6666666.229936.peg.557 CDS CP008984.1 551711 552481 2 + 771 Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) 5-FCL-like protein;
Serine-glyoxylate cycle;
Succinate dehydrogenase;
TCA Cycle
fig|6666666.229936.peg.558 CDS CP008984.1 552493 552885 1 + 393 Fumarate reductase subunit C Succinate dehydrogenase
fig|6666666.229936.peg.559 CDS CP008984.1 552895 553239 1 + 345 Fumarate reductase subunit D Succinate dehydrogenase
fig|6666666.229936.peg.560 CDS CP008984.1 555483 553336 -3 - 2148 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) RNA methylation
fig|6666666.229936.peg.561 CDS CP008984.1 555754 556782 1 + 1029 Alcohol dehydrogenase (EC 1.1.1.1) 5-FCL-like protein;
Butanol Biosynthesis;
Fermentations: Mixed acid;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229936.peg.562 CDS CP008984.1 558075 556861 -3 - 1215 ATPase component BioM of energizing module of biotin ECF transporter Biotin biosynthesis;
Biotin synthesis cluster;
ECF class transporters
fig|6666666.229936.peg.563 CDS CP008984.1 558898 558200 -1 - 699 Queuosine Biosynthesis QueC ATPase Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229936.peg.564 CDS CP008984.1 559069 558932 -1 - 138 Queuosine Biosynthesis QueC ATPase Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229936.peg.565 CDS CP008984.1 559253 559717 2 + 465 FIG00710847: hypothetical protein - none -
fig|6666666.229936.peg.566 CDS CP008984.1 559690 560514 1 + 825 FIG00711691: hypothetical protein - none -
fig|6666666.229936.peg.567 CDS CP008984.1 560925 560746 -3 - 180 hypothetical protein - none -
fig|6666666.229936.peg.568 CDS CP008984.1 561849 561025 -3 - 825 3@1,5@1-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17) cAMP signaling in bacteria
fig|6666666.229936.peg.569 CDS CP008984.1 562523 561900 -2 - 624 ADP-ribose pyrophosphatase (EC 3.6.1.13) CBSS-216591.1.peg.168;
NAD and NADP cofactor biosynthesis global;
Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229936.peg.570 CDS CP008984.1 563449 562769 -1 - 681 FIG009095: D,D-carboxypeptidase family protein CBSS-584.1.peg.1352
fig|6666666.229936.peg.571 CDS CP008984.1 564584 563451 -2 - 1134 N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18) A Glutathione-dependent Thiol Reductase Associated with a Step in Lysine Biosynthesis;
CBSS-584.1.peg.1352;
Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229936.peg.572 CDS CP008984.1 565065 564721 -3 - 345 FIG138056: a glutathione-dependent thiol reductase A Glutathione-dependent Thiol Reductase Associated with a Step in Lysine Biosynthesis;
CBSS-584.1.peg.1352
fig|6666666.229936.peg.573 CDS CP008984.1 567011 565131 -2 - 1881 Chaperone protein HtpG Protein chaperones
fig|6666666.229936.peg.574 CDS CP008984.1 568305 567145 -3 - 1161 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) Chorismate Synthesis;
Chorismate Synthesis;
Phenylalanine and Tyrosine Branches from Chorismate;
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229936.peg.575 CDS CP008984.1 569420 568503 -2 - 918 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC 3.5.1.108) KDO2-Lipid A biosynthesis
fig|6666666.229936.peg.576 CDS CP008984.1 570741 569458 -3 - 1284 Cell division protein FtsZ (EC 3.4.24.-) Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ;
cell division core of larger cluster
fig|6666666.229936.peg.577 CDS CP008984.1 572105 570825 -2 - 1281 Cell division protein FtsA Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ;
cell division core of larger cluster
fig|6666666.229936.peg.578 CDS CP008984.1 572897 572130 -2 - 768 Cell division protein FtsQ Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ;
cell division core of larger cluster
fig|6666666.229936.peg.579 CDS CP008984.1 573823 572894 -1 - 930 D-alanine--D-alanine ligase (EC 6.3.2.4) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo;
cell division cluster containing FtsQ
fig|6666666.229936.peg.580 CDS CP008984.1 575266 573836 -1 - 1431 UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo;
cell division cluster containing FtsQ
fig|6666666.229936.peg.581 CDS CP008984.1 576401 575337 -2 - 1065 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) Peptidoglycan Biosynthesis;
cell division core of larger cluster
fig|6666666.229936.peg.582 CDS CP008984.1 576788 576441 -2 - 348 Cell division protein FtsW Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ
fig|6666666.229936.peg.583 CDS CP008984.1 577632 576772 -3 - 861 Cell division protein FtsW Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ
fig|6666666.229936.peg.584 CDS CP008984.1 578951 577647 -2 - 1305 UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC 6.3.2.9) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo
fig|6666666.229936.peg.585 CDS CP008984.1 579100 578978 -1 - 123 Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC 2.7.8.13) Peptidoglycan Biosynthesis
fig|6666666.229936.peg.586 CDS CP008984.1 579623 579117 -2 - 507 Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC 2.7.8.13) Peptidoglycan Biosynthesis
fig|6666666.229936.peg.587 CDS CP008984.1 580063 579680 -1 - 384 Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC 2.7.8.13) Peptidoglycan Biosynthesis
fig|6666666.229936.peg.588 CDS CP008984.1 581385 580057 -3 - 1329 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase (EC 6.3.2.10) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo
fig|6666666.229936.peg.589 CDS CP008984.1 582910 581444 -1 - 1467 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo
fig|6666666.229936.peg.590 CDS CP008984.1 584751 582928 -3 - 1824 Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129) 16S rRNA modification within P site of ribosome;
Bacterial Cell Division;
Bacterial Cytoskeleton;
CBSS-83331.1.peg.3039;
Peptidoglycan Biosynthesis
fig|6666666.229936.peg.591 CDS CP008984.1 585086 584769 -2 - 318 Cell division protein FtsL 16S rRNA modification within P site of ribosome;
Bacterial Cell Division;
Bacterial Cytoskeleton;
Stationary phase repair cluster
fig|6666666.229936.peg.592 CDS CP008984.1 585280 585086 -1 - 195 rRNA small subunit methyltransferase H 16S rRNA modification within P site of ribosome;
Bacterial Cell Division
fig|6666666.229936.peg.593 CDS CP008984.1 586053 585307 -3 - 747 rRNA small subunit methyltransferase H 16S rRNA modification within P site of ribosome;
Bacterial Cell Division
fig|6666666.229936.peg.594 CDS CP008984.1 586621 586163 -1 - 459 Cell division protein MraZ 16S rRNA modification within P site of ribosome;
Bacterial Cell Division;
Bacterial Cytoskeleton
fig|6666666.229936.peg.595 CDS CP008984.1 588481 586883 -1 - 1599 Carbon starvation protein A Carbon Starvation
fig|6666666.229936.peg.596 CDS CP008984.1 589705 589022 -1 - 684 Arginine ABC transporter, permease protein ArtM Arginine and Ornithine Degradation
fig|6666666.229936.peg.597 CDS CP008984.1 590370 589708 -3 - 663 Arginine ABC transporter, permease protein ArtQ Arginine and Ornithine Degradation
fig|6666666.229936.peg.598 CDS CP008984.1 591094 590375 -1 - 720 Arginine ABC transporter, periplasmic arginine-binding protein ArtI Arginine and Ornithine Degradation
fig|6666666.229936.peg.599 CDS CP008984.1 591849 591115 -3 - 735 Arginine ABC transporter, ATP-binding protein ArtP Arginine and Ornithine Degradation
fig|6666666.229936.peg.600 CDS CP008984.1 592574 591990 -2 - 585 Phosphoheptose isomerase 1 (EC 5.3.1.-) Capsular heptose biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.229936.peg.601 CDS CP008984.1 596196 592663 -3 - 3534 Transcription-repair coupling factor Cell division-ribosomal stress proteins cluster;
Transcription factors bacterial;
Transcription repair cluster
fig|6666666.229936.peg.602 CDS CP008984.1 596761 596588 -1 - 174 hypothetical protein - none -
fig|6666666.229936.peg.603 CDS CP008984.1 597008 596799 -2 - 210 Predicted P-loop ATPase fused to an acetyltransferase COG1444 tRNA modification Archaea;
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229936.peg.604 CDS CP008984.1 598725 597025 -3 - 1701 Predicted P-loop ATPase fused to an acetyltransferase COG1444 tRNA modification Archaea;
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229936.peg.605 CDS CP008984.1 599433 598729 -3 - 705 unknown - none -
fig|6666666.229936.peg.606 CDS CP008984.1 600064 599600 -1 - 465 Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly CBSS-56780.10.peg.1536;
Glycyl-tRNA synthetase containing cluster;
tRNA-methylthiotransferase containing cluster
fig|6666666.229936.peg.607 CDS CP008984.1 600821 601051 2 + 231 Flp pilus assembly protein, pilin Flp Widespread colonization island
fig|6666666.229936.peg.608 CDS CP008984.1 601642 601818 1 + 177 Type IV prepilin peptidase TadV/CpaA Widespread colonization island
fig|6666666.229936.peg.609 CDS CP008984.1 601870 602694 1 + 825 Flp pilus assembly protein RcpC/CpaB Widespread colonization island
fig|6666666.229936.peg.610 CDS CP008984.1 602696 604078 2 + 1383 Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly Widespread colonization island
fig|6666666.229936.peg.611 CDS CP008984.1 604075 604578 1 + 504 Flp pilus assembly protein RcpB Widespread colonization island
fig|6666666.229936.peg.612 CDS CP008984.1 604594 605718 1 + 1125 Type II/IV secretion system ATPase TadZ/CpaE, associated with Flp pilus assembly Widespread colonization island
fig|6666666.229936.peg.613 CDS CP008984.1 605732 607012 2 + 1281 Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily Widespread colonization island
fig|6666666.229936.peg.614 CDS CP008984.1 607012 607899 1 + 888 Flp pilus assembly protein TadB Widespread colonization island
fig|6666666.229936.peg.615 CDS CP008984.1 607896 608762 3 + 867 Type II/IV secretion system protein TadC, associated with Flp pilus assembly Widespread colonization island
fig|6666666.229936.peg.616 CDS CP008984.1 608752 609513 1 + 762 Flp pilus assembly protein TadD, contains TPR repeat Widespread colonization island
fig|6666666.229936.peg.617 CDS CP008984.1 610168 610746 1 + 579 Flp pilus assembly surface protein TadF, ATP/GTP-binding motif Widespread colonization island
fig|6666666.229936.peg.618 CDS CP008984.1 610763 612334 2 + 1572 Protein TadG, associated with Flp pilus assembly Widespread colonization island
fig|6666666.229936.peg.619 CDS CP008984.1 613708 612878 -1 - 831 Mobile element protein - none -
fig|6666666.229936.peg.620 CDS CP008984.1 616034 614532 -2 - 1503 Sodium-dependent transporter - none -
fig|6666666.229936.peg.621 CDS CP008984.1 616315 616187 -1 - 129 hypothetical protein - none -
fig|6666666.229936.peg.622 CDS CP008984.1 616451 616726 2 + 276 tRNA pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses;
tRNA modification Archaea;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229936.peg.623 CDS CP008984.1 616728 616862 3 + 135 hypothetical protein - none -
fig|6666666.229936.peg.624 CDS CP008984.1 616867 617178 1 + 312 Membrane protein, MgtC/SapB family - none -
fig|6666666.229936.peg.625 CDS CP008984.1 617834 617217 -2 - 618 hypothetical protein - none -
fig|6666666.229936.peg.626 CDS CP008984.1 618119 617847 -2 - 273 hypothetical protein - none -
fig|6666666.229936.peg.627 CDS CP008984.1 619346 618165 -2 - 1182 Selenocysteine-specific translation elongation factor Selenocysteine metabolism
fig|6666666.229936.peg.628 CDS CP008984.1 620024 619353 -2 - 672 Selenocysteine-specific translation elongation factor Selenocysteine metabolism
fig|6666666.229936.peg.629 CDS CP008984.1 621415 620021 -1 - 1395 L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1) Selenocysteine metabolism
fig|6666666.229936.peg.630 CDS CP008984.1 621534 621418 -3 - 117 hypothetical protein - none -
fig|6666666.229936.peg.631 CDS CP008984.1 621559 623274 1 + 1716 Prolyl-tRNA synthetase (EC 6.1.1.15), bacterial type tRNA aminoacylation, Pro
fig|6666666.229936.peg.632 CDS CP008984.1 623372 623235 -2 - 138 hypothetical protein - none -
fig|6666666.229936.peg.633 CDS CP008984.1 623341 623505 1 + 165 Ethidium bromide-methyl viologen resistance protein EmrE - none -
fig|6666666.229936.peg.634 CDS CP008984.1 623587 623841 1 + 255 YgfY COG2938 - none -
fig|6666666.229936.peg.635 CDS CP008984.1 623974 624549 1 + 576 RNA polymerase sigma factor RpoE Transcription initiation, bacterial sigma factors
fig|6666666.229936.peg.636 CDS CP008984.1 624588 625172 3 + 585 Sigma factor RpoE negative regulatory protein RseA Periplasmic Stress Response;
Transcription initiation, bacterial sigma factors
fig|6666666.229936.peg.637 CDS CP008984.1 625254 626210 3 + 957 Sigma factor RpoE negative regulatory protein RseB precursor Periplasmic Stress Response;
Transcription initiation, bacterial sigma factors
fig|6666666.229936.peg.638 CDS CP008984.1 626220 626657 3 + 438 Sigma factor RpoE regulatory protein RseC Transcription initiation, bacterial sigma factors
fig|6666666.229936.peg.639 CDS CP008984.1 626738 627250 2 + 513 Molybdopterin-guanine dinucleotide biosynthesis protein MobB Molybdenum cofactor biosynthesis;
ar-431-EC Molybdopterin-guanine dinucleotide biosynthesis
fig|6666666.229936.peg.640 CDS CP008984.1 627345 628100 3 + 756 Short chain dehydrogenase - none -
fig|6666666.229936.peg.641 CDS CP008984.1 629640 628180 -3 - 1461 Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3) Dipeptidases (EC 3.4.13.-);
Recycling of Peptidoglycan Amino Acids
fig|6666666.229936.peg.642 CDS CP008984.1 629756 630220 2 + 465 Xanthine-guanine phosphoribosyltransferase (EC 2.4.2.22) Purine conversions
fig|6666666.229936.peg.643 CDS CP008984.1 632653 630311 -1 - 2343 Outer membrane protein Imp, required for envelope biogenesis / Organic solvent tolerance protein precursor Lipopolysaccharide assembly
fig|6666666.229936.peg.644 CDS CP008984.1 633279 632719 -3 - 561 DNA-3-methyladenine glycosylase (EC 3.2.2.20) CBSS-326442.4.peg.1852;
DNA Repair Base Excision
fig|6666666.229936.peg.645 CDS CP008984.1 633481 634086 1 + 606 probable integral membrane protein Cj0014c - none -
fig|6666666.229936.peg.646 CDS CP008984.1 635388 634138 -3 - 1251 Diaminopimelate decarboxylase (EC 4.1.1.20) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229936.peg.647 CDS CP008984.1 635525 635406 -2 - 120 hypothetical protein - none -
fig|6666666.229936.peg.648 CDS CP008984.1 635648 635962 2 + 315 Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly Biogenesis of cytochrome c oxidases
fig|6666666.229936.peg.649 CDS CP008984.1 635959 637848 1 + 1890 ATP-dependent DNA helicase RecQ DNA repair, bacterial RecFOR pathway
fig|6666666.229936.peg.650 CDS CP008984.1 637945 640365 1 + 2421 DNA gyrase subunit B (EC 5.99.1.3) Cell Division Subsystem including YidCD;
DNA gyrase subunits;
DNA replication cluster 1;
DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.229936.peg.651 CDS CP008984.1 641334 640420 -3 - 915 Pantothenate kinase (EC 2.7.1.33) Coenzyme A Biosynthesis
fig|6666666.229936.peg.652 CDS CP008984.1 642068 643252 2 + 1185 Translation elongation factor Tu Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Translation elongation factors bacterial;
Universal GTPases
fig|6666666.229936.peg.653 CDS CP008984.1 644263 643322 -1 - 942 Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229936.peg.654 CDS CP008984.1 644426 645913 2 + 1488 Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229936.peg.655 CDS CP008984.1 645929 646957 2 + 1029 Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) D-ribose utilization
fig|6666666.229936.peg.656 CDS CP008984.1 646963 648429 1 + 1467 L-xylulose/3-keto-L-gulonate kinase (EC 2.7.1.-) L-ascorbate utilization (and related gene clusters)
fig|6666666.229936.peg.657 CDS CP008984.1 650792 648477 -2 - 2316 Transcription accessory protein (S1 RNA-binding domain) CBSS-243265.1.peg.198;
Cell division-ribosomal stress proteins cluster;
Transcription factors bacterial
fig|6666666.229936.peg.658 CDS CP008984.1 651896 651009 -2 - 888 RuBisCO operon transcriptional regulator CO2 uptake, carboxysome
fig|6666666.229936.peg.659 CDS CP008984.1 652006 653475 1 + 1470 Sodium-dependent transporter - none -
fig|6666666.229936.peg.660 CDS CP008984.1 653487 654086 3 + 600 Phosphoglycerate mutase (EC 5.4.2.1) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis;
Phosphoglycerate mutase protein family
fig|6666666.229936.peg.661 CDS CP008984.1 654610 654476 -1 - 135 Transcription accessory protein (S1 RNA-binding domain) CBSS-243265.1.peg.198;
Cell division-ribosomal stress proteins cluster;
Transcription factors bacterial
fig|6666666.229936.peg.662 CDS CP008984.1 654821 655303 2 + 483 Transcription elongation factor GreB CBSS-243265.1.peg.198;
Transcription factors bacterial
fig|6666666.229936.peg.663 CDS CP008984.1 655577 655386 -2 - 192 hypothetical protein - none -
fig|6666666.229936.peg.664 CDS CP008984.1 656179 655592 -1 - 588 DNA-directed RNA polymerase specialized sigma subunit, sigma24-like - none -
fig|6666666.229936.peg.665 CDS CP008984.1 656646 656365 -3 - 282 hypothetical protein - none -
fig|6666666.229936.peg.666 CDS CP008984.1 656908 657645 1 + 738 Putative preQ0 transporter Queuosine-Archaeosine Biosynthesis
fig|6666666.229936.peg.667 CDS CP008984.1 658963 657686 -1 - 1278 Uncharacterized protein EC-HemY, likely associated with heme metabolism based on gene clustering with hemC, hemD in Proteobacteria (unrelated to HemY-type PPO in GramPositives) - none -
fig|6666666.229936.peg.668 CDS CP008984.1 660361 658976 -1 - 1386 Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) Heme and Siroheme Biosynthesis
fig|6666666.229936.peg.669 CDS CP008984.1 661138 660392 -1 - 747 Uroporphyrinogen-III synthase (EC 4.2.1.75) Heme and Siroheme Biosynthesis
fig|6666666.229936.peg.670 CDS CP008984.1 662077 661151 -1 - 927 Porphobilinogen deaminase (EC 2.5.1.61) Heme and Siroheme Biosynthesis
fig|6666666.229936.peg.671 CDS CP008984.1 662233 664734 1 + 2502 Adenylate cyclase (EC 4.6.1.1) cAMP signaling in bacteria
fig|6666666.229936.peg.672 CDS CP008984.1 664744 665373 1 + 630 Nitrate/nitrite response regulator protein - none -
fig|6666666.229936.peg.673 CDS CP008984.1 665440 667299 1 + 1860 Uncharacterized protein YtfM precursor Cluster Ytf and putative sugar transporter;
Putative sugar ABC transporter (ytf cluster)
fig|6666666.229936.peg.674 CDS CP008984.1 667327 671205 1 + 3879 Uncharacterized protein YtfN Cluster Ytf and putative sugar transporter;
Putative sugar ABC transporter (ytf cluster)
fig|6666666.229936.peg.675 CDS CP008984.1 671208 672755 3 + 1548 Exopolyphosphatase (EC 3.6.1.11) Phosphate metabolism;
Polyphosphate
fig|6666666.229936.peg.676 CDS CP008984.1 674436 672820 -3 - 1617 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) CBSS-584.1.peg.3382;
Pyruvate metabolism I: anaplerotic reactions, PEP;
Serine-glyoxylate cycle
fig|6666666.229936.peg.677 CDS CP008984.1 674694 675338 3 + 645 converved hypothetical protein - none -
fig|6666666.229936.peg.678 CDS CP008984.1 675387 676277 3 + 891 NADH pyrophosphatase (EC 3.6.1.22) DNA uptake cluster;
Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229936.peg.679 CDS CP008984.1 676274 677338 2 + 1065 Uroporphyrinogen III decarboxylase (EC 4.1.1.37) Heme and Siroheme Biosynthesis
fig|6666666.229936.peg.680 CDS CP008984.1 677356 677946 1 + 591 FIG01200173: hypothetical protein - none -
fig|6666666.229936.peg.681 CDS CP008984.1 678113 678385 2 + 273 DNA-binding protein HU-alpha DNA structural proteins, bacterial;
DNA uptake cluster
fig|6666666.229936.peg.682 CDS CP008984.1 678511 679308 1 + 798 Transcriptional regulator of glmS gene, DeoR family - none -
fig|6666666.229936.peg.683 CDS CP008984.1 679363 681198 1 + 1836 Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) Sialic Acid Metabolism;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229936.peg.684 CDS CP008984.1 682415 681351 -2 - 1065 FIG01220323: hypothetical protein - none -
fig|6666666.229936.peg.685 CDS CP008984.1 682515 683405 3 + 891 Transcriptional regulator, LysR family - none -
fig|6666666.229936.peg.686 CDS CP008984.1 684653 683544 -2 - 1110 Putative exported protein precursor - none -
fig|6666666.229936.peg.687 CDS CP008984.1 685122 684790 -3 - 333 Carboxylesterase type B - none -
fig|6666666.229936.peg.688 CDS CP008984.1 686445 685390 -3 - 1056 Carboxylesterase type B - none -
fig|6666666.229936.peg.689 CDS CP008984.1 687650 686664 -2 - 987 Aldo-keto reductase - none -
fig|6666666.229936.peg.690 CDS CP008984.1 688559 687714 -2 - 846 oxidoreductase of aldo/keto reductase family, subgroup 1 - none -
fig|6666666.229936.peg.691 CDS CP008984.1 688918 689811 1 + 894 Transcriptional regulator, LysR family - none -
fig|6666666.229936.peg.692 CDS CP008984.1 690653 689889 -2 - 765 putative tetracenomycin polyketide synthesis O-methyltransferase - none -
fig|6666666.229936.peg.693 CDS CP008984.1 692541 691042 -3 - 1500 ATPase component BioM of energizing module of biotin ECF transporter Biotin biosynthesis;
Biotin synthesis cluster;
ECF class transporters
fig|6666666.229936.peg.694 CDS CP008984.1 692667 693335 3 + 669 Uncharacterized protein conserved in bacteria - none -
fig|6666666.229936.peg.695 CDS CP008984.1 693338 693811 2 + 474 UPF0225 protein YchJ Broadly distributed proteins not in subsystems
fig|6666666.229936.peg.696 CDS CP008984.1 693808 694638 1 + 831 Ribonuclease BN (EC 3.1.-.-) - none -
fig|6666666.229936.peg.697 CDS CP008984.1 694635 695069 3 + 435 D-tyrosyl-tRNA(Tyr) deacylase (EC 3.6.1.n1) - none -
fig|6666666.229936.peg.698 CDS CP008984.1 695235 696443 3 + 1209 Sodium/glutamate symport protein - none -
fig|6666666.229936.peg.699 CDS CP008984.1 697887 696499 -3 - 1389 Copper sensory histidine kinase CpxA Orphan regulatory proteins
fig|6666666.229936.peg.700 CDS CP008984.1 698627 697932 -2 - 696 Copper-sensing two-component system response regulator CpxR Orphan regulatory proteins
fig|6666666.229936.peg.701 CDS CP008984.1 699082 698669 -1 - 414 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex Lipopolysaccharide assembly
fig|6666666.229936.peg.702 CDS CP008984.1 700173 699148 -3 - 1026 Nucleoid-associated protein NdpA CBSS-211586.1.peg.1979
fig|6666666.229936.peg.703 CDS CP008984.1 700300 700524 1 + 225 FIG002927: hypothetical protein CBSS-211586.1.peg.1979
fig|6666666.229936.peg.704 CDS CP008984.1 700529 702268 2 + 1740 FIG001881: hydrolase of alkaline phosphatase superfamily CBSS-211586.1.peg.1979
fig|6666666.229936.peg.705 CDS CP008984.1 702527 703516 2 + 990 Cytosine deaminase (EC 3.5.4.1) CBSS-326442.4.peg.1852;
Creatine and Creatinine Degradation;
pyrimidine conversions
fig|6666666.229936.peg.706 CDS CP008984.1 704516 703614 -2 - 903 Nucleoside triphosphate pyrophosphohydrolase MazG (EC 3.6.1.8) Nucleoside triphosphate pyrophosphohydrolase MazG
fig|6666666.229936.peg.707 CDS CP008984.1 704589 705014 3 + 426 Universal stress protein A Universal stress protein family
fig|6666666.229936.peg.708 CDS CP008984.1 705214 707838 1 + 2625 Alanyl-tRNA synthetase (EC 6.1.1.7) Cluster containing Alanyl-tRNA synthetase;
tRNA aminoacylation, Ala
fig|6666666.229936.peg.709 CDS CP008984.1 707961 708143 3 + 183 Carbon storage regulator Carbon Starvation;
Carbon storage regulator
fig|6666666.229936.peg.710 CDS CP008984.1 708175 709539 1 + 1365 Phosphomannomutase (EC 5.4.2.8) Mannose Metabolism
fig|6666666.229936.peg.711 CDS CP008984.1 709615 710502 1 + 888 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) - none -
fig|6666666.229936.peg.712 CDS CP008984.1 710657 710974 2 + 318 Methionine repressor MetJ Methionine Biosynthesis
fig|6666666.229936.peg.713 CDS CP008984.1 711062 710931 -2 - 132 hypothetical protein - none -
fig|6666666.229936.peg.714 CDS CP008984.1 711160 711795 1 + 636 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) Cluster containing Glutathione synthetase;
Heat shock dnaK gene cluster extended;
RNA methylation
fig|6666666.229936.peg.715 CDS CP008984.1 711812 712369 2 + 558 UPF0301 protein YqgE Cluster containing Glutathione synthetase
fig|6666666.229936.peg.716 CDS CP008984.1 712369 712788 1 + 420 Putative Holliday junction resolvase YggF Cluster containing Alanyl-tRNA synthetase;
Cluster containing Glutathione synthetase
fig|6666666.229936.peg.717 CDS CP008984.1 714194 712884 -2 - 1311 Enolase (EC 4.2.1.11) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis;
Serine-glyoxylate cycle
fig|6666666.229936.peg.718 CDS CP008984.1 714379 714263 -1 - 117 hypothetical protein - none -
fig|6666666.229936.peg.719 CDS CP008984.1 715983 714832 -3 - 1152 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) CBSS-354.1.peg.876;
RNA methylation;
Riboflavin, FMN and FAD metabolism in plants;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229936.peg.720 CDS CP008984.1 716501 716244 -2 - 258 Probable exported or periplasmic protein in ApbE locus Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229936.peg.721 CDS CP008984.1 717668 716580 -2 - 1089 Thiamin biosynthesis lipoprotein ApbE - none -
fig|6666666.229936.peg.722 CDS CP008984.1 717814 717665 -1 - 150 hypothetical protein - none -
fig|6666666.229936.peg.723 CDS CP008984.1 719054 717819 -2 - 1236 Na(+)-translocating NADH-quinone reductase subunit F (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229936.peg.724 CDS CP008984.1 719662 719066 -1 - 597 Na(+)-translocating NADH-quinone reductase subunit E (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229936.peg.725 CDS CP008984.1 720295 719666 -1 - 630 Na(+)-translocating NADH-quinone reductase subunit D (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229936.peg.726 CDS CP008984.1 721080 720295 -3 - 786 Na(+)-translocating NADH-quinone reductase subunit C (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229936.peg.727 CDS CP008984.1 722308 721073 -1 - 1236 Na(+)-translocating NADH-quinone reductase subunit B (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229936.peg.728 CDS CP008984.1 723651 722311 -3 - 1341 Na(+)-translocating NADH-quinone reductase subunit A (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229936.peg.729 CDS CP008984.1 723733 723870 1 + 138 hypothetical protein - none -
fig|6666666.229936.peg.730 CDS CP008984.1 723997 723881 -1 - 117 hypothetical protein - none -
fig|6666666.229936.peg.731 CDS CP008984.1 724318 724007 -1 - 312 Cell division protein BolA Bacterial Cell Division;
CBSS-339671.5.peg.589
fig|6666666.229936.peg.732 CDS CP008984.1 724422 725015 3 + 594 Hypothetical lipoprotein YajG precursor CBSS-339671.5.peg.589
fig|6666666.229936.peg.733 CDS CP008984.1 725121 724996 -3 - 126 hypothetical protein - none -
fig|6666666.229936.peg.734 CDS CP008984.1 726595 725516 -1 - 1080 Membrane-bound lytic murein transglycosylase C precursor (EC 3.2.1.-) Murein Hydrolases
fig|6666666.229936.peg.735 CDS CP008984.1 726876 726598 -3 - 279 FIG001341: Probable Fe(2+)-trafficking protein YggX Heat shock dnaK gene cluster extended
fig|6666666.229936.peg.736 CDS CP008984.1 728044 726854 -1 - 1191 A/G-specific adenine glycosylase (EC 3.2.2.-) DNA repair, bacterial
fig|6666666.229936.peg.737 CDS CP008984.1 728210 728977 2 + 768 tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33) CBSS-83333.1.peg.2911;
RNA methylation;
tRNA modification Bacteria
fig|6666666.229936.peg.738 CDS CP008984.1 729008 729349 2 + 342 FIG002060: uncharacterized protein YggL CBSS-83333.1.peg.2911
fig|6666666.229936.peg.739 CDS CP008984.1 729568 730566 1 + 999 Ferric iron ABC transporter, iron-binding protein Iron acquisition in Streptococcus
fig|6666666.229936.peg.740 CDS CP008984.1 730647 732167 3 + 1521 Ferric iron ABC transporter, permease protein Iron acquisition in Streptococcus
fig|6666666.229936.peg.741 CDS CP008984.1 732183 733241 3 + 1059 Ferric iron ABC transporter, ATP-binding protein Iron acquisition in Streptococcus
fig|6666666.229936.peg.742 CDS CP008984.1 733567 733262 -1 - 306 tRNA-dihydrouridine synthase C (EC 1.-.-.-) Murein hydrolase regulation and cell death;
tRNA modification Bacteria
fig|6666666.229936.peg.743 CDS CP008984.1 734001 733567 -3 - 435 tRNA-dihydrouridine synthase C (EC 1.-.-.-) Murein hydrolase regulation and cell death;
tRNA modification Bacteria
fig|6666666.229936.peg.744 CDS CP008984.1 734229 734005 -3 - 225 tRNA-dihydrouridine synthase C (EC 1.-.-.-) Murein hydrolase regulation and cell death;
tRNA modification Bacteria
fig|6666666.229936.peg.745 CDS CP008984.1 735108 734233 -3 - 876 DnaJ-like protein DjlA - none -
fig|6666666.229936.peg.746 CDS CP008984.1 735834 735190 -3 - 645 Orotate phosphoribosyltransferase (EC 2.4.2.10) De Novo Pyrimidine Synthesis
fig|6666666.229936.peg.747 CDS CP008984.1 736560 735844 -3 - 717 Ribonuclease PH (EC 2.7.7.56) Heat shock dnaK gene cluster extended;
tRNA processing
fig|6666666.229936.peg.748 CDS CP008984.1 736678 737541 1 + 864 Protein YicC CBSS-323097.3.peg.2594
fig|6666666.229936.peg.749 CDS CP008984.1 737569 738456 1 + 888 Folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress - none -
fig|6666666.229936.peg.750 CDS CP008984.1 738575 738964 2 + 390 Patatin-like phospholipase - none -
fig|6666666.229936.peg.751 CDS CP008984.1 739039 739761 1 + 723 SSU ribosomal protein S2p (SAe) CBSS-312309.3.peg.1965;
Ribosome recycling related cluster
fig|6666666.229936.peg.752 CDS CP008984.1 739916 740764 2 + 849 Translation elongation factor Ts CBSS-312309.3.peg.1965;
Ribosome recycling related cluster;
Translation elongation factors bacterial
fig|6666666.229936.peg.753 CDS CP008984.1 741061 741747 1 + 687 DNA recombination and repair protein RecO CBSS-176299.4.peg.1292;
DNA repair, bacterial RecFOR pathway;
Glycyl-tRNA synthetase containing cluster
fig|6666666.229936.peg.754 CDS CP008984.1 741749 743065 2 + 1317 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) RNA methylation
fig|6666666.229936.peg.755 CDS CP008984.1 743075 745306 2 + 2232 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I CBSS-176299.4.peg.1292;
Stringent Response, (p)ppGpp metabolism
fig|6666666.229936.peg.756 CDS CP008984.1 745331 745687 2 + 357 Diacylglycerol kinase (EC 2.7.1.107) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Riboflavin synthesis cluster
fig|6666666.229936.peg.757 CDS CP008984.1 745760 745891 2 + 132 hypothetical protein - none -
fig|6666666.229936.peg.758 CDS CP008984.1 745959 746132 3 + 174 hypothetical protein - none -
fig|6666666.229936.peg.759 CDS CP008984.1 746306 746431 2 + 126 Mobile element protein - none -
fig|6666666.229936.peg.760 CDS CP008984.1 746425 746934 1 + 510 Mobile element protein - none -
fig|6666666.229936.peg.761 CDS CP008984.1 747514 747011 -1 - 504 Mercuric resistance operon regulatory protein - none -
fig|6666666.229936.peg.762 CDS CP008984.1 747853 747542 -1 - 312 Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives DNA replication cluster 1
fig|6666666.229936.peg.763 CDS CP008984.1 747945 748262 3 + 318 unknown - none -
fig|6666666.229936.peg.764 CDS CP008984.1 748272 751034 3 + 2763 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) - none -
fig|6666666.229936.peg.765 CDS CP008984.1 751111 751515 1 + 405 Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-) Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229936.peg.766 CDS CP008984.1 753041 752007 -2 - 1035 DNA polymerase III delta subunit (EC 2.7.7.7) CBSS-208964.1.peg.3988
fig|6666666.229936.peg.767 CDS CP008984.1 753544 753041 -1 - 504 LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B) CBSS-208964.1.peg.3988;
KDO2-Lipid A biosynthesis;
Lipopolysaccharide assembly
fig|6666666.229936.peg.768 CDS CP008984.1 753533 753661 2 + 129 hypothetical protein - none -
fig|6666666.229936.peg.769 CDS CP008984.1 756274 753686 -1 - 2589 Leucyl-tRNA synthetase (EC 6.1.1.4) CBSS-208964.1.peg.3988;
tRNA aminoacylation, Leu
fig|6666666.229936.peg.770 CDS CP008984.1 756422 756252 -2 - 171 hypothetical protein - none -
fig|6666666.229936.peg.771 CDS CP008984.1 756510 756394 -3 - 117 hypothetical protein - none -
fig|6666666.229936.peg.772 CDS CP008984.1 757022 756465 -2 - 558 FIG00696423: hypothetical protein - none -
fig|6666666.229936.peg.773 CDS CP008984.1 757343 757050 -2 - 294 nucleotidyltransferase - none -
fig|6666666.229936.peg.774 CDS CP008984.1 757746 757327 -3 - 420 nucleotidyltransferase substrate binding protein, HI0074 family - none -
fig|6666666.229936.peg.775 CDS CP008984.1 758664 757837 -3 - 828 Bis(5@1-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) - none -
fig|6666666.229936.peg.776 CDS CP008984.1 759543 758680 -3 - 864 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase (EC 2.1.1.182) RNA methylation;
Ribosome biogenesis bacterial
fig|6666666.229936.peg.777 CDS CP008984.1 760553 759621 -2 - 933 Survival protein SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA) (EC 5.2.1.8) Lipopolysaccharide assembly;
Peptidyl-prolyl cis-trans isomerase;
Periplasmic Stress Response
fig|6666666.229936.peg.778 CDS CP008984.1 761154 760618 -3 - 537 Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR De Novo Pyrimidine Synthesis;
De Novo Pyrimidine Synthesis;
pyrimidine conversions
fig|6666666.229936.peg.779 CDS CP008984.1 761703 761293 -3 - 411 Copper metallochaperone, bacterial analog of Cox17 protein Biogenesis of cytochrome c oxidases
fig|6666666.229936.peg.780 CDS CP008984.1 761816 762427 2 + 612 FIG002903: a protein of unknown function perhaps involved in purine metabolism CBSS-354.1.peg.876
fig|6666666.229936.peg.781 CDS CP008984.1 762451 763818 1 + 1368 Adenylosuccinate lyase (EC 4.3.2.2) CBSS-354.1.peg.876;
Purine conversions
fig|6666666.229936.peg.782 CDS CP008984.1 763787 764047 2 + 261 hypothetical protein - none -
fig|6666666.229936.peg.783 CDS CP008984.1 764040 764789 3 + 750 Sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140) - none -
fig|6666666.229936.peg.784 CDS CP008984.1 765034 764903 -1 - 132 Transcriptional regulator, MerR family Cobalt-zinc-cadmium resistance
fig|6666666.229936.peg.785 CDS CP008984.1 765310 765038 -1 - 273 Transcriptional regulator, MerR family Cobalt-zinc-cadmium resistance
fig|6666666.229936.peg.786 CDS CP008984.1 765448 766572 1 + 1125 S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) Glutathione-dependent pathway of formaldehyde detoxification
fig|6666666.229936.peg.787 CDS CP008984.1 766587 767417 3 + 831 S-formylglutathione hydrolase (EC 3.1.2.12) Glutathione-dependent pathway of formaldehyde detoxification
fig|6666666.229936.peg.788 CDS CP008984.1 767770 767904 1 + 135 hypothetical protein - none -
fig|6666666.229936.peg.789 CDS CP008984.1 769436 768057 -2 - 1380 Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1) Bacterial signal recognition particle (SRP);
Universal GTPases
fig|6666666.229936.peg.790 CDS CP008984.1 769590 770384 3 + 795 FIG001154: CcsA-related protein - none -
fig|6666666.229936.peg.791 CDS CP008984.1 770459 771721 2 + 1263 Magnesium and cobalt efflux protein CorC CBSS-56780.10.peg.1536;
Copper homeostasis: copper tolerance;
Glycyl-tRNA synthetase containing cluster;
Magnesium transport;
tRNA-methylthiotransferase containing cluster
fig|6666666.229936.peg.792 CDS CP008984.1 771896 772366 2 + 471 Ferric siderophore transport system, biopolymer transport protein ExbB Ton and Tol transport systems
fig|6666666.229936.peg.793 CDS CP008984.1 772370 772816 2 + 447 Biopolymer transport protein ExbD/TolR Ton and Tol transport systems
fig|6666666.229936.peg.794 CDS CP008984.1 772826 773584 2 + 759 Ferric siderophore transport system, periplasmic binding protein TonB Hemin transport system;
Ton and Tol transport systems
fig|6666666.229936.peg.795 CDS CP008984.1 774833 775087 2 + 255 hypothetical protein - none -
fig|6666666.229936.peg.796 CDS CP008984.1 775267 775398 1 + 132 hypothetical protein - none -
fig|6666666.229936.peg.797 CDS CP008984.1 775416 775595 3 + 180 hypothetical protein - none -
fig|6666666.229936.peg.798 CDS CP008984.1 775576 775971 1 + 396 cell filamentation-like protein - none -
fig|6666666.229936.peg.799 CDS CP008984.1 776254 776105 -1 - 150 hypothetical protein - none -
fig|6666666.229936.peg.800 CDS CP008984.1 777290 777105 -2 - 186 hypothetical protein - none -
fig|6666666.229936.peg.801 CDS CP008984.1 777669 777520 -3 - 150 hypothetical protein - none -
fig|6666666.229936.peg.802 CDS CP008984.1 778427 778567 2 + 141 hypothetical protein - none -
fig|6666666.229936.peg.803 CDS CP008984.1 778702 781122 1 + 2421 Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-) Anaerobic respiratory reductases
fig|6666666.229936.peg.804 CDS CP008984.1 781133 781750 2 + 618 Anaerobic dimethyl sulfoxide reductase chain B (EC 1.8.5.3) - none -
fig|6666666.229936.peg.805 CDS CP008984.1 781752 782564 3 + 813 Anaerobic dimethyl sulfoxide reductase chain C (EC 1.8.5.3) - none -
fig|6666666.229936.peg.806 CDS CP008984.1 782638 783252 1 + 615 Putative oxidoreductase component of anaerobic dehydrogenases; Functional role page for Chaperone protein TorD - none -
fig|6666666.229936.peg.807 CDS CP008984.1 783266 783427 2 + 162 Ferredoxin-type protein NapF (periplasmic nitrate reductase) - none -
fig|6666666.229936.peg.808 CDS CP008984.1 783450 783632 3 + 183 hypothetical protein - none -
fig|6666666.229936.peg.809 CDS CP008984.1 783619 784524 1 + 906 Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14) Glycyl-tRNA synthetase;
Glycyl-tRNA synthetase containing cluster;
tRNA aminoacylation, Gly
fig|6666666.229936.peg.810 CDS CP008984.1 784574 784834 2 + 261 Glutaredoxin-related protein Glutaredoxins
fig|6666666.229936.peg.811 CDS CP008984.1 785002 785292 1 + 291 ISSo9, nucleotidyltransferase domain protein - none -
fig|6666666.229936.peg.812 CDS CP008984.1 785383 786087 1 + 705 hypothetical protein - none -
fig|6666666.229936.peg.813 CDS CP008984.1 786169 788250 1 + 2082 Glycyl-tRNA synthetase beta chain (EC 6.1.1.14) Glycyl-tRNA synthetase;
Glycyl-tRNA synthetase containing cluster;
tRNA aminoacylation, Gly
fig|6666666.229936.peg.814 CDS CP008984.1 789484 788462 -1 - 1023 Porphobilinogen synthase (EC 4.2.1.24) Heme and Siroheme Biosynthesis
fig|6666666.229936.peg.815 CDS CP008984.1 790267 789503 -1 - 765 Twin-arginine translocation protein TatC Cluster-based Subsystem Grouping Hypotheticals - perhaps Proteosome Related;
Twin-arginine translocation system
fig|6666666.229936.peg.816 CDS CP008984.1 790967 790305 -2 - 663 Twin-arginine translocation protein TatB Twin-arginine translocation system
fig|6666666.229936.peg.817 CDS CP008984.1 791195 790971 -2 - 225 Twin-arginine translocation protein TatA Cluster-based Subsystem Grouping Hypotheticals - perhaps Proteosome Related;
Twin-arginine translocation system
fig|6666666.229936.peg.818 CDS CP008984.1 792470 791598 -2 - 873 33 kDa chaperonin (Heat shock protein 33) (HSP33) CBSS-584.1.peg.3382
fig|6666666.229936.peg.819 CDS CP008984.1 792954 792538 -3 - 417 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) CBSS-584.1.peg.3382;
Cell division-ribosomal stress proteins cluster;
DNA replication cluster 1;
Heat shock dnaK gene cluster extended
fig|6666666.229936.peg.820 CDS CP008984.1 793626 792967 -3 - 660 FIG001957: putative hydrolase CBSS-584.1.peg.3382
fig|6666666.229936.peg.821 CDS CP008984.1 793707 794255 3 + 549 ADP compounds hydrolase NudE (EC 3.6.1.-) Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229936.peg.822 CDS CP008984.1 795141 794260 -3 - 882 Transcriptional regulator, AraC family - none -
fig|6666666.229936.peg.823 CDS CP008984.1 795837 795211 -3 - 627 membrane protein ykgB - none -
fig|6666666.229936.peg.824 CDS CP008984.1 796206 798212 3 + 2007 oligopeptide transporter - none -
fig|6666666.229936.peg.825 CDS CP008984.1 798274 798702 1 + 429 hypothetical protein - none -
fig|6666666.229936.peg.826 CDS CP008984.1 798740 799549 2 + 810 3@1(2@1),5@1-bisphosphate nucleotidase (EC 3.1.3.7) - none -
fig|6666666.229936.peg.827 CDS CP008984.1 799631 801115 2 + 1485 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) Entner-Doudoroff Pathway;
Pentose phosphate pathway
fig|6666666.229936.peg.828 CDS CP008984.1 801368 802066 2 + 699 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type Entner-Doudoroff Pathway;
Pentose phosphate pathway
fig|6666666.229936.peg.829 CDS CP008984.1 802393 802821 1 + 429 FIG00848466: hypothetical protein - none -
fig|6666666.229936.peg.830 CDS CP008984.1 802936 803628 1 + 693 Aspartate racemase (EC 5.1.1.13) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229936.peg.831 CDS CP008984.1 803641 803895 1 + 255 Glutaredoxin-related protein Glutaredoxins
fig|6666666.229936.peg.832 CDS CP008984.1 803975 804433 2 + 459 Uncharacterized virulence-associated protein D - none -
fig|6666666.229936.peg.833 CDS CP008984.1 804968 804822 -2 - 147 hypothetical protein - none -
fig|6666666.229936.peg.834 CDS CP008984.1 804989 806443 2 + 1455 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) D-gluconate and ketogluconates metabolism;
Pentose phosphate pathway
fig|6666666.229936.peg.835 CDS CP008984.1 808098 806854 -3 - 1245 FIG138576: 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229936.peg.836 CDS CP008984.1 808846 808118 -1 - 729 3-oxoacyl-[ACP] reductase (EC 1.1.1.100) Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229936.peg.837 CDS CP008984.1 809339 808896 -2 - 444 3-hydroxydecanoyl-[ACP] dehydratase (EC 4.2.1.60) Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229936.peg.838 CDS CP008984.1 810555 809332 -3 - 1224 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) FabV like Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229936.peg.839 CDS CP008984.1 811043 810564 -2 - 480 FIG085779: Lipoprotein Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229936.peg.840 CDS CP008984.1 813446 811173 -2 - 2274 FIG021862: membrane protein, exporter Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229936.peg.841 CDS CP008984.1 814037 813453 -2 - 585 FIG027190: Putative transmembrane protein Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229936.peg.842 CDS CP008984.1 814480 814034 -1 - 447 FIG002571: 4-hydroxybenzoyl-CoA thioesterase domain protein Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229936.peg.843 CDS CP008984.1 815403 814477 -3 - 927 Lysophospholipid acyltransferase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229936.peg.844 CDS CP008984.1 816122 815400 -2 - 723 FIG143263: Glycosyl transferase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229936.peg.845 CDS CP008984.1 817483 816122 -1 - 1362 FIGfam138462: Acyl-CoA synthetase, AMP-(fatty) acid ligase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229936.peg.846 CDS CP008984.1 818025 817480 -3 - 546 FIG017861: hypothetical protein Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229936.peg.847 CDS CP008984.1 819717 818050 -3 - 1668 FIGfam138462: Acyl-CoA synthetase, AMP-(fatty) acid ligase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229936.peg.848 CDS CP008984.1 819968 819717 -2 - 252 Acyl carrier protein (ACP2) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229936.peg.849 CDS CP008984.1 820234 819971 -1 - 264 Acyl carrier protein (ACP1) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229936.peg.850 CDS CP008984.1 821000 820212 -2 - 789 FIG018329: 1-acyl-sn-glycerol-3-phosphate acyltransferase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229936.peg.851 CDS CP008984.1 821728 820985 -1 - 744 3-oxoacyl-[ACP] synthase Phospholipid and Fatty acid biosynthesis related cluster
fig|6666666.229936.peg.852 CDS CP008984.1 822081 821758 -3 - 324 hypothetical protein - none -
fig|6666666.229936.peg.853 CDS CP008984.1 822109 822534 1 + 426 Excinuclease ATPase subunit - none -
fig|6666666.229936.peg.854 CDS CP008984.1 823348 822635 -1 - 714 Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5@1-phosphoribitylamino)uracil phosphatase Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants
fig|6666666.229936.peg.855 CDS CP008984.1 824252 823362 -2 - 891 Tyrosine recombinase XerC - none -
fig|6666666.229936.peg.856 CDS CP008984.1 825086 824262 -2 - 825 Diaminopimelate epimerase (EC 5.1.1.7) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229936.peg.857 CDS CP008984.1 825344 825165 -2 - 180 hypothetical protein - none -
fig|6666666.229936.peg.858 CDS CP008984.1 826372 825344 -1 - 1029 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) - none -
fig|6666666.229936.peg.859 CDS CP008984.1 826555 827055 1 + 501 hypothetical protein - none -
fig|6666666.229936.peg.860 CDS CP008984.1 827028 827147 3 + 120 hypothetical protein - none -
fig|6666666.229936.peg.861 CDS CP008984.1 829727 827157 -2 - 2571 ClpB protein Protein chaperones;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229936.peg.862 CDS CP008984.1 829992 830573 3 + 582 Late competence protein ComEA, DNA receptor - none -
fig|6666666.229936.peg.863 CDS CP008984.1 831758 830646 -2 - 1113 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch;
Threonine and Homoserine Biosynthesis
fig|6666666.229936.peg.864 CDS CP008984.1 832754 831942 -2 - 813 HMP-PP hydrolase (pyridoxal phosphatase) Cof, detected in genetic screen for thiamin metabolic genes (PMID:15292217) - none -
fig|6666666.229936.peg.865 CDS CP008984.1 832900 833586 1 + 687 Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy Biotin biosynthesis Experimental;
Biotin synthesis cluster;
CBSS-216591.1.peg.168
fig|6666666.229936.peg.866 CDS CP008984.1 833703 834287 3 + 585 NfuA Fe-S protein maturation Biotin biosynthesis Experimental;
DNA uptake cluster
fig|6666666.229936.peg.867 CDS CP008984.1 834635 834474 -2 - 162 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) / Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) Riboflavin synthesis cluster
fig|6666666.229936.peg.868 CDS CP008984.1 836199 834784 -3 - 1416 Branched-chain amino acid transport system carrier protein - none -
fig|6666666.229936.peg.869 CDS CP008984.1 836313 837947 3 + 1635 CTP synthase (EC 6.3.4.2) CTP synthase (EC 6.3.4.2) cluster;
pyrimidine conversions
fig|6666666.229936.peg.870 CDS CP008984.1 839347 839658 1 + 312 LSU ribosomal protein L24p (L26e) - none -
fig|6666666.229936.peg.871 CDS CP008984.1 839787 840215 3 + 429 LSU ribosomal protein L5p (L11e) - none -
fig|6666666.229936.peg.872 CDS CP008984.1 840570 840962 3 + 393 SSU ribosomal protein S8p (S15Ae) - none -
fig|6666666.229936.peg.873 CDS CP008984.1 840978 841511 3 + 534 LSU ribosomal protein L6p (L9e) - none -
fig|6666666.229936.peg.874 CDS CP008984.1 841573 841878 1 + 306 LSU ribosomal protein L18p (L5e) - none -
fig|6666666.229936.peg.875 CDS CP008984.1 841894 842394 1 + 501 SSU ribosomal protein S5p (S2e) - none -
fig|6666666.229936.peg.876 CDS CP008984.1 842584 843018 1 + 435 LSU ribosomal protein L15p (L27Ae) - none -
fig|6666666.229936.peg.877 CDS CP008984.1 843022 844347 1 + 1326 Preprotein translocase secY subunit (TC 3.A.5.1.1) - none -
fig|6666666.229936.peg.878 CDS CP008984.1 844373 844486 2 + 114 LSU ribosomal protein L36p - none -
fig|6666666.229936.peg.879 CDS CP008984.1 844628 844984 2 + 357 SSU ribosomal protein S13p (S18e) - none -
fig|6666666.229936.peg.880 CDS CP008984.1 845000 845389 2 + 390 SSU ribosomal protein S11p (S14e) - none -
fig|6666666.229936.peg.881 CDS CP008984.1 845431 846039 1 + 609 SSU ribosomal protein S4p (S9e) - none -
fig|6666666.229936.peg.882 CDS CP008984.1 846068 847057 2 + 990 DNA-directed RNA polymerase alpha subunit (EC 2.7.7.6) RNA polymerase bacterial
fig|6666666.229936.peg.883 CDS CP008984.1 847099 847488 1 + 390 LSU ribosomal protein L17p - none -
fig|6666666.229936.peg.884 CDS CP008984.1 849726 848497 -3 - 1230 Tyrosine-specific transport protein - none -
fig|6666666.229936.peg.885 CDS CP008984.1 850539 849856 -3 - 684 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases - none -
fig|6666666.229936.peg.886 CDS CP008984.1 851826 850555 -3 - 1272 Nicotinamide-nucleotide adenylyltransferase, NadR family (EC 2.7.7.1) / Ribosylnicotinamide kinase (EC 2.7.1.22) NAD and NADP cofactor biosynthesis global;
NAD and NADP cofactor biosynthesis global
fig|6666666.229936.peg.887 CDS CP008984.1 852391 852146 -1 - 246 tRNA 5-methylaminomethyl-2-thiouridine synthase TusA mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.229936.peg.888 CDS CP008984.1 852479 852751 2 + 273 FIG000605: protein co-occurring with transport systems (COG1739) Transport system clustering with HemG
fig|6666666.229936.peg.889 CDS CP008984.1 853017 854480 3 + 1464 Potassium uptake protein TrkH Hyperosmotic potassium uptake;
Potassium homeostasis;
Potassium homeostasis;
Transport system clustering with HemG
fig|6666666.229936.peg.890 CDS CP008984.1 854480 854992 2 + 513 Protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-) Heme and Siroheme Biosynthesis;
Transport system clustering with HemG
fig|6666666.229936.peg.891 CDS CP008984.1 860907 861134 3 + 228 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229936.peg.892 CDS CP008984.1 861212 861457 2 + 246 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229936.peg.893 CDS CP008984.1 862241 862101 -2 - 141 hypothetical protein - none -
fig|6666666.229936.peg.894 CDS CP008984.1 862636 863265 1 + 630 Mobile element protein - none -
fig|6666666.229936.peg.895 CDS CP008984.1 863361 863945 3 + 585 Hydrolase, haloacid dehalogenase-like family - none -
fig|6666666.229936.peg.896 CDS CP008984.1 864487 864636 1 + 150 Integral membrane protein - none -
fig|6666666.229936.peg.897 CDS CP008984.1 864683 864880 2 + 198 hypothetical protein - none -
fig|6666666.229936.peg.898 CDS CP008984.1 865889 864852 -2 - 1038 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) LOS core oligosaccharide biosynthesis
fig|6666666.229936.peg.899 CDS CP008984.1 867489 866071 -3 - 1419 Aspartate ammonia-lyase (EC 4.3.1.1) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229936.peg.900 CDS CP008984.1 867719 868201 2 + 483 FxsA protein - none -
fig|6666666.229936.peg.901 CDS CP008984.1 868288 868578 1 + 291 Heat shock protein 60 family co-chaperone GroES GroEL GroES
fig|6666666.229936.peg.902 CDS CP008984.1 868699 870342 1 + 1644 Heat shock protein 60 family chaperone GroEL GroEL GroES
fig|6666666.229936.peg.903 CDS CP008984.1 871288 870431 -1 - 858 Methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5) / Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9) 5-FCL-like protein;
One-carbon metabolism by tetrahydropterines;
One-carbon metabolism by tetrahydropterines;
Serine-glyoxylate cycle;
Serine-glyoxylate cycle
fig|6666666.229936.peg.904 CDS CP008984.1 872214 871705 -3 - 510 Mobile element protein - none -
fig|6666666.229936.peg.905 CDS CP008984.1 872333 872208 -2 - 126 Mobile element protein - none -
fig|6666666.229936.peg.906 CDS CP008984.1 872680 872507 -1 - 174 hypothetical protein - none -
fig|6666666.229936.peg.907 CDS CP008984.1 872879 872748 -2 - 132 hypothetical protein - none -
fig|6666666.229936.peg.908 CDS CP008984.1 875782 872951 -1 - 2832 Excinuclease ABC subunit A DNA repair, UvrABC system
fig|6666666.229936.peg.909 CDS CP008984.1 875952 876431 3 + 480 Single-stranded DNA-binding protein DNA repair, bacterial;
DNA repair, bacterial RecFOR pathway
fig|6666666.229936.peg.910 CDS CP008984.1 877391 876537 -2 - 855 Methyl-directed repair DNA adenine methylase (EC 2.1.1.72) DNA repair, bacterial
fig|6666666.229936.peg.911 CDS CP008984.1 878482 877394 -1 - 1089 3-dehydroquinate synthase (EC 4.2.3.4) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate);
Type IV pilus
fig|6666666.229936.peg.912 CDS CP008984.1 879033 878506 -3 - 528 Shikimate kinase I (EC 2.7.1.71) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229936.peg.913 CDS CP008984.1 880657 879248 -1 - 1410 Type IV pilus biogenesis protein PilQ; Competence protein E DNA uptake cluster;
Type IV pilus
fig|6666666.229936.peg.914 CDS CP008984.1 881069 880677 -2 - 393 Type IV pilus biogenesis protein PilQ; Competence protein D DNA uptake cluster;
Type IV pilus
fig|6666666.229936.peg.915 CDS CP008984.1 881593 881069 -1 - 525 Competence protein C; Chromosome segregation ATPases DNA uptake cluster
fig|6666666.229936.peg.916 CDS CP008984.1 882108 881590 -3 - 519 Type IV pilus biogenesis protein PilN; Competence protein B DNA uptake cluster;
Type IV pilus
fig|6666666.229936.peg.917 CDS CP008984.1 882928 882119 -1 - 810 Type IV pilus biogenesis protein PilM; Competence protein A DNA uptake cluster;
Type IV pilus
fig|6666666.229936.peg.918 CDS CP008984.1 883062 885629 3 + 2568 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) DNA uptake cluster;
Peptidoglycan Biosynthesis;
Type IV pilus
fig|6666666.229936.peg.919 CDS CP008984.1 885761 885642 -2 - 120 hypothetical protein - none -
fig|6666666.229936.peg.920 CDS CP008984.1 885723 886568 3 + 846 Protein involved in catabolism of external DNA DNA processing cluster;
DNA uptake cluster
fig|6666666.229936.peg.921 CDS CP008984.1 886663 888033 1 + 1371 Glutathione reductase (EC 1.8.1.7) Glutathione: Redox cycle
fig|6666666.229936.peg.922 CDS CP008984.1 888810 888166 -3 - 645 Cyclic AMP receptor protein cAMP signaling in bacteria
fig|6666666.229936.peg.923 CDS CP008984.1 889066 888848 -1 - 219 FIG00696234: hypothetical protein - none -
fig|6666666.229936.peg.924 CDS CP008984.1 889689 889090 -3 - 600 Transcriptional regulator SlmA, TetR family - none -
fig|6666666.229936.peg.925 CDS CP008984.1 890144 889689 -2 - 456 Deoxyuridine 5@1-triphosphate nucleotidohydrolase (EC 3.6.1.23) Housecleaning nucleoside triphosphate pyrophosphatases;
Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229936.peg.926 CDS CP008984.1 891412 890213 -1 - 1200 Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) / Phosphopantothenoylcysteine synthetase (EC 6.3.2.5) Coenzyme A Biosynthesis;
Coenzyme A Biosynthesis
fig|6666666.229936.peg.927 CDS CP008984.1 891387 891539 3 + 153 hypothetical protein - none -
fig|6666666.229936.peg.928 CDS CP008984.1 891590 891787 2 + 198 DNA repair protein RadC DNA repair, bacterial
fig|6666666.229936.peg.929 CDS CP008984.1 892457 892203 -2 - 255 hypothetical protein - none -
fig|6666666.229936.peg.930 CDS CP008984.1 893035 893448 1 + 414 transcriptional regulatory protein - none -
fig|6666666.229936.peg.931 CDS CP008984.1 893583 893467 -3 - 117 hypothetical protein - none -
fig|6666666.229936.peg.932 CDS CP008984.1 893698 894162 1 + 465 DNA repair protein RadC DNA repair, bacterial
fig|6666666.229936.peg.933 CDS CP008984.1 894434 894607 2 + 174 LSU ribosomal protein L28p - none -
fig|6666666.229936.peg.934 CDS CP008984.1 894619 894789 1 + 171 LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-independent - none -
fig|6666666.229936.peg.935 CDS CP008984.1 894829 895686 1 + 858 Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) DNA Repair Base Excision
fig|6666666.229936.peg.936 CDS CP008984.1 896672 895689 -2 - 984 COG0859: ADP-heptose:LPS heptosyltransferase - none -
fig|6666666.229936.peg.937 CDS CP008984.1 897773 896751 -2 - 1023 COG0859: ADP-heptose:LPS heptosyltransferase - none -
fig|6666666.229936.peg.938 CDS CP008984.1 898466 897774 -2 - 693 Beta-1,4-galactosyltransferase LOS core oligosaccharide biosynthesis
fig|6666666.229936.peg.939 CDS CP008984.1 898741 898529 -1 - 213 LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-dependent - none -
fig|6666666.229936.peg.940 CDS CP008984.1 898999 899847 1 + 849 Lipooligosaccharide biosynthesis protein lex-1 (EC 2.-.-.-) - none -
fig|6666666.229936.peg.941 CDS CP008984.1 899856 900860 3 + 1005 putative capsular polysaccharide synthesis protein - none -
fig|6666666.229936.peg.942 CDS CP008984.1 901730 900867 -2 - 864 Involved in lipopolysaccharide biosynthesis - none -
fig|6666666.229936.peg.943 CDS CP008984.1 902117 904156 2 + 2040 Helicase PriA essential for oriC/DnaA-independent DNA replication Conserved gene cluster associated with Met-tRNA formyltransferase
fig|6666666.229936.peg.944 CDS CP008984.1 904266 905078 3 + 813 Cell division protein - none -
fig|6666666.229936.peg.945 CDS CP008984.1 905278 905844 1 + 567 Probable Co/Zn/Cd efflux system membrane fusion protein Cobalt-zinc-cadmium resistance
fig|6666666.229936.peg.946 CDS CP008984.1 905870 907066 2 + 1197 Probable Co/Zn/Cd efflux system membrane fusion protein Cobalt-zinc-cadmium resistance
fig|6666666.229936.peg.947 CDS CP008984.1 907080 910178 3 + 3099 RND multidrug efflux transporter; Acriflavin resistance protein Multidrug Resistance Efflux Pumps
fig|6666666.229936.peg.948 CDS CP008984.1 910278 910147 -3 - 132 hypothetical protein - none -
fig|6666666.229936.peg.949 CDS CP008984.1 910332 911132 3 + 801 Orf2 - none -
fig|6666666.229936.peg.950 CDS CP008984.1 911785 912732 1 + 948 Magnesium and cobalt transport protein CorA Magnesium transport
fig|6666666.229936.peg.951 CDS CP008984.1 912748 913308 1 + 561 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) CBSS-630.2.peg.3360
fig|6666666.229936.peg.952 CDS CP008984.1 913333 913626 1 + 294 COG1872 - none -
fig|6666666.229936.peg.953 CDS CP008984.1 913743 914402 3 + 660 Oxygen-insensitive NAD(P)H nitroreductase (EC 1.-.-.-) / Dihydropteridine reductase (EC 1.5.1.34) - none -
fig|6666666.229936.peg.954 CDS CP008984.1 914467 916440 1 + 1974 Phosphoglycerol transferase I (EC 2.7.8.20) Synthesis of osmoregulated periplasmic glucans
fig|6666666.229936.peg.955 CDS CP008984.1 917347 916610 -1 - 738 COG1496: Uncharacterized conserved protein - none -
fig|6666666.229936.peg.956 CDS CP008984.1 918323 917349 -2 - 975 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) RNA pseudouridine syntheses;
Ribosome biogenesis bacterial
fig|6666666.229936.peg.957 CDS CP008984.1 918430 919218 1 + 789 Probable component of the lipoprotein assembly complex (forms a complex with YaeT, YfgL, and NlpB) Lipopolysaccharide assembly
fig|6666666.229936.peg.958 CDS CP008984.1 919829 919254 -2 - 576 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) 5-FCL-like protein;
Folate Biosynthesis;
One-carbon metabolism by tetrahydropterines;
Serine-glyoxylate cycle
fig|6666666.229936.peg.959 CDS CP008984.1 920449 920123 -1 - 327 Z-ring-associated protein ZapA Bacterial Cytoskeleton
fig|6666666.229936.peg.960 CDS CP008984.1 920608 921156 1 + 549 FIG001590: Putative conserved exported protein precursor CBSS-87626.3.peg.3639
fig|6666666.229936.peg.961 CDS CP008984.1 921171 922472 3 + 1302 Xaa-Pro aminopeptidase (EC 3.4.11.9) Aminopeptidases (EC 3.4.11.-);
CBSS-87626.3.peg.3639
fig|6666666.229936.peg.962 CDS CP008984.1 922781 922626 -2 - 156 hypothetical protein - none -
fig|6666666.229936.peg.963 CDS CP008984.1 922967 923215 2 + 249 SSU ribosomal protein S16p - none -
fig|6666666.229936.peg.964 CDS CP008984.1 923241 923768 3 + 528 16S rRNA processing protein RimM Ribosome biogenesis bacterial
fig|6666666.229936.peg.965 CDS CP008984.1 923834 924583 2 + 750 tRNA (Guanine37-N1) -methyltransferase (EC 2.1.1.31) RNA methylation;
Ribosome biogenesis bacterial;
tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229936.peg.966 CDS CP008984.1 924609 924959 3 + 351 LSU ribosomal protein L19p - none -
fig|6666666.229936.peg.967 CDS CP008984.1 925557 925069 -3 - 489 Rod shape-determining protein MreD Bacterial Cell Division;
Bacterial Cytoskeleton;
CBSS-354.1.peg.2917
fig|6666666.229936.peg.968 CDS CP008984.1 926630 925557 -2 - 1074 Rod shape-determining protein MreC Bacterial Cell Division;
Bacterial Cytoskeleton;
CBSS-354.1.peg.2917
fig|6666666.229936.peg.969 CDS CP008984.1 927755 926700 -2 - 1056 Rod shape-determining protein MreB Bacterial Cell Division;
Bacterial Cytoskeleton
fig|6666666.229936.peg.970 CDS CP008984.1 928005 930410 3 + 2406 3@1-to-5@1 exoribonuclease RNase R RNA processing and degradation, bacterial
fig|6666666.229936.peg.971 CDS CP008984.1 930407 931144 2 + 738 23S rRNA (guanosine-2@1-O-) -methyltransferase rlmB (EC 2.1.1.-) RNA methylation
fig|6666666.229936.peg.972 CDS CP008984.1 931477 932919 1 + 1443 Glycerol-3-phosphate transporter - none -
fig|6666666.229936.peg.973 CDS CP008984.1 933153 934235 3 + 1083 Glycerophosphoryl diester phosphodiesterase, periplasmic (EC 3.1.4.46) - none -
fig|6666666.229936.peg.974 CDS CP008984.1 935410 934292 -1 - 1119 Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake CBSS-272943.3.peg.1367;
Conserved gene cluster associated with Met-tRNA formyltransferase;
YrdC-YciO-Sua5 protein family
fig|6666666.229936.peg.975 CDS CP008984.1 936079 935630 -1 - 450 LSU ribosomal protein L9p Primosomal replication protein N clusters with ribosomal proteins
fig|6666666.229936.peg.976 CDS CP008984.1 936325 936095 -1 - 231 SSU ribosomal protein S18p @ SSU ribosomal protein S18p, zinc-independent Primosomal replication protein N clusters with ribosomal proteins
fig|6666666.229936.peg.977 CDS CP008984.1 936664 936338 -1 - 327 Primosomal replication protein N Primosomal replication protein N clusters with ribosomal proteins
fig|6666666.229936.peg.978 CDS CP008984.1 937028 936651 -2 - 378 SSU ribosomal protein S6p Primosomal replication protein N clusters with ribosomal proteins
fig|6666666.229936.peg.979 CDS CP008984.1 937803 937180 -3 - 624 SOS-response repressor and protease LexA (EC 3.4.21.88) DNA repair, bacterial
fig|6666666.229936.peg.980 CDS CP008984.1 938011 940449 1 + 2439 Glycerol-3-phosphate acyltransferase (EC 2.3.1.15) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229936.peg.981 CDS CP008984.1 942334 940490 -1 - 1845 Lipid A export ATP-binding/permease protein MsbA - none -
fig|6666666.229936.peg.982 CDS CP008984.1 943339 942422 -1 - 918 transcriptional regulator MtrA - none -
fig|6666666.229936.peg.983 CDS CP008984.1 943443 943784 3 + 342 Possible carboxymuconolactone decarboxylase family protein (EC 4.1.1.44) - none -
fig|6666666.229936.peg.984 CDS CP008984.1 944924 943881 -2 - 1044 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) LOS core oligosaccharide biosynthesis
fig|6666666.229936.peg.985 CDS CP008984.1 944977 945738 1 + 762 3-deoxy-D-manno-octulosonic acid kinase (EC 2.7.1.-) - none -
fig|6666666.229936.peg.986 CDS CP008984.1 946285 945800 -1 - 486 Phosphopantetheine adenylyltransferase (EC 2.7.7.3) CBSS-266117.6.peg.1260;
CBSS-269801.1.peg.1715;
Coenzyme A Biosynthesis
fig|6666666.229936.peg.987 CDS CP008984.1 947569 946286 -1 - 1284 3-deoxy-D-manno-octulosonic-acid transferase (EC 2.-.-.-) KDO2-Lipid A biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.229936.peg.988 CDS CP008984.1 947668 948429 1 + 762 Lipopolysaccharide biosynthesis glycosyltransferase - none -
fig|6666666.229936.peg.989 CDS CP008984.1 948702 948881 3 + 180 hypothetical protein - none -
fig|6666666.229936.peg.990 CDS CP008984.1 950295 949126 -3 - 1170 Lipoprotein NlpD Stationary phase repair cluster
fig|6666666.229936.peg.991 CDS CP008984.1 950503 950312 -1 - 192 Cobalamin biosynthesis protein CobN and related Mg-chelatases - none -
fig|6666666.229936.peg.992 CDS CP008984.1 951093 950518 -3 - 576 FIG139438: lipoprotein B Stationary phase repair cluster
fig|6666666.229936.peg.993 CDS CP008984.1 951861 951121 -3 - 741 5-nucleotidase SurE (EC 3.1.3.5) @ Exopolyphosphatase (EC 3.6.1.11) Housecleaning nucleoside triphosphate pyrophosphatases;
Phosphate metabolism;
Polyphosphate;
Stationary phase repair cluster
fig|6666666.229936.peg.994 CDS CP008984.1 952904 951894 -2 - 1011 tRNA pseudouridine 13 synthase (EC 4.2.1.-) Stationary phase repair cluster;
tRNA modification Archaea;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229936.peg.995 CDS CP008984.1 953380 952901 -1 - 480 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis;
Stationary phase repair cluster
fig|6666666.229936.peg.996 CDS CP008984.1 954072 953377 -3 - 696 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC 2.7.7.60) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis;
Stationary phase repair cluster
fig|6666666.229936.peg.997 CDS CP008984.1 954350 954072 -2 - 279 Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage Bacterial Cell Division;
Bacterial Cytoskeleton;
Cell division-ribosomal stress proteins cluster;
Stationary phase repair cluster
fig|6666666.229936.peg.998 CDS CP008984.1 954502 955176 1 + 675 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) Conserved gene cluster associated with Met-tRNA formyltransferase;
Pentose phosphate pathway;
Riboflavin synthesis cluster
fig|6666666.229936.peg.999 CDS CP008984.1 955179 955853 3 + 675 Phosphoglycolate phosphatase (EC 3.1.3.18) 2-phosphoglycolate salvage;
Glycolate, glyoxylate interconversions
fig|6666666.229936.peg.1000 CDS CP008984.1 956133 956783 3 + 651 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) Bacterial Cell Division
fig|6666666.229936.peg.1001 CDS CP008984.1 956792 957727 2 + 936 Cell division protein FtsX Bacterial Cell Division
fig|6666666.229936.peg.1002 CDS CP008984.1 958277 957861 -2 - 417 Threonine dehydratase biosynthetic (EC 4.3.1.19) - none -
fig|6666666.229936.peg.1003 CDS CP008984.1 958735 958328 -1 - 408 Threonine dehydratase biosynthetic (EC 4.3.1.19) - none -
fig|6666666.229936.peg.1004 CDS CP008984.1 959645 958809 -2 - 837 Acetolactate synthase large subunit (EC 2.2.1.6) - none -
fig|6666666.229936.peg.1005 CDS CP008984.1 959980 960798 1 + 819 Cof protein, HD superfamily hydrolase Housecleaning nucleoside triphosphate pyrophosphatases
fig|6666666.229936.peg.1006 CDS CP008984.1 961759 960836 -1 - 924 Lysophospholipase L2 (EC 3.1.1.5) Triacylglycerol metabolism
fig|6666666.229936.peg.1007 CDS CP008984.1 962894 961752 -2 - 1143 O-antigen ligase LOS core oligosaccharide biosynthesis
fig|6666666.229936.peg.1008 CDS CP008984.1 962928 963089 3 + 162 hypothetical protein - none -
fig|6666666.229936.peg.1009 CDS CP008984.1 964181 963102 -2 - 1080 Fructose-bisphosphate aldolase class II (EC 4.1.2.13) Glycolysis and Gluconeogenesis
fig|6666666.229936.peg.1010 CDS CP008984.1 965409 964246 -3 - 1164 Phosphoglycerate kinase (EC 2.7.2.3) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis
fig|6666666.229936.peg.1011 CDS CP008984.1 966217 965522 -1 - 696 Probable ribonuclease HI0526 precursor - none -
fig|6666666.229936.peg.1012 CDS CP008984.1 966324 966545 3 + 222 4Fe-4S ferredoxin, iron-sulfur binding - none -
fig|6666666.229936.peg.1013 CDS CP008984.1 967687 966611 -1 - 1077 hypothetical tRNA/rRNA methyltransferase yfiF [EC:2.1.1.-] RNA methylation;
tRNA modification Bacteria
fig|6666666.229936.peg.1014 CDS CP008984.1 967873 969240 1 + 1368 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229936.peg.1015 CDS CP008984.1 969909 969280 -3 - 630 Mobile element protein - none -
fig|6666666.229936.peg.1016 CDS CP008984.1 970151 970020 -2 - 132 hypothetical protein - none -
fig|6666666.229936.peg.1017 CDS CP008984.1 970332 970460 3 + 129 hypothetical protein - none -
fig|6666666.229936.peg.1018 CDS CP008984.1 971596 970691 -1 - 906 FIG00904000: hypothetical protein - none -
fig|6666666.229936.peg.1019 CDS CP008984.1 973529 972057 -2 - 1473 Xylulose kinase (EC 2.7.1.17) Xylose utilization
fig|6666666.229936.peg.1020 CDS CP008984.1 974898 973579 -3 - 1320 Xylose isomerase (EC 5.3.1.5) Xylose utilization
fig|6666666.229936.peg.1021 CDS CP008984.1 975156 976154 3 + 999 Xylose ABC transporter, periplasmic xylose-binding protein XylF Xylose utilization
fig|6666666.229936.peg.1022 CDS CP008984.1 976214 977725 2 + 1512 D-xylose transport ATP-binding protein XylG Xylose utilization
fig|6666666.229936.peg.1023 CDS CP008984.1 977729 978856 2 + 1128 Xylose ABC transporter, permease protein XylH Xylose utilization
fig|6666666.229936.peg.1024 CDS CP008984.1 978945 980141 3 + 1197 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229936.peg.1025 CDS CP008984.1 980194 981540 1 + 1347 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229936.peg.1026 CDS CP008984.1 981666 981544 -3 - 123 hypothetical protein - none -
fig|6666666.229936.peg.1027 CDS CP008984.1 981655 982827 1 + 1173 Xylose activator XylR (AraC family) Xylose utilization
fig|6666666.229936.peg.1028 CDS CP008984.1 984311 982854 -2 - 1458 Permeases of the major facilitator superfamily - none -
fig|6666666.229936.peg.1029 CDS CP008984.1 984448 984332 -1 - 117 hypothetical protein - none -
fig|6666666.229936.peg.1030 CDS CP008984.1 984597 985595 3 + 999 PTS system, mannose-specific IIA component (EC 2.7.1.69) / PTS system, mannose-specific IIB component (EC 2.7.1.69) Mannose Metabolism;
Mannose Metabolism;
Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229936.peg.1031 CDS CP008984.1 985607 986410 2 + 804 PTS system, mannose-specific IIC component - none -
fig|6666666.229936.peg.1032 CDS CP008984.1 986426 987262 2 + 837 PTS system, mannose-specific IID component - none -
fig|6666666.229936.peg.1033 CDS CP008984.1 989047 987443 -1 - 1605 Type I restriction-modification system, DNA-methyltransferase subunit M (EC 2.1.1.72) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229936.peg.1034 CDS CP008984.1 989807 989148 -2 - 660 Type I restriction-modification system, specificity subunit S (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229936.peg.1035 CDS CP008984.1 990277 989837 -1 - 441 Type I restriction-modification system, specificity subunit S (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229936.peg.1036 CDS CP008984.1 991475 990486 -2 - 990 Putative DNA-binding protein in cluster with Type I restriction-modification system Restriction-Modification System
fig|6666666.229936.peg.1037 CDS CP008984.1 992306 991524 -2 - 783 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229936.peg.1038 CDS CP008984.1 994524 992371 -3 - 2154 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229936.peg.1039 CDS CP008984.1 994825 994673 -1 - 153 hypothetical protein - none -
fig|6666666.229936.peg.1040 CDS CP008984.1 994830 995876 3 + 1047 ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1) Polyamine Metabolism
fig|6666666.229936.peg.1041 CDS CP008984.1 996365 995937 -2 - 429 ATP synthase epsilon chain (EC 3.6.3.14) - none -
fig|6666666.229936.peg.1042 CDS CP008984.1 997780 996407 -1 - 1374 ATP synthase beta chain (EC 3.6.3.14) - none -
fig|6666666.229936.peg.1043 CDS CP008984.1 998666 997797 -2 - 870 ATP synthase gamma chain (EC 3.6.3.14) - none -
fig|6666666.229936.peg.1044 CDS CP008984.1 1000223 998682 -2 - 1542 ATP synthase alpha chain (EC 3.6.3.14) - none -
fig|6666666.229936.peg.1045 CDS CP008984.1 1000784 1000236 -2 - 549 ATP synthase delta chain (EC 3.6.3.14) - none -
fig|6666666.229936.peg.1046 CDS CP008984.1 1001268 1000798 -3 - 471 ATP synthase F0 sector subunit b - none -
fig|6666666.229936.peg.1047 CDS CP008984.1 1001572 1001318 -1 - 255 ATP synthase F0 sector subunit c (EC 3.6.3.14) - none -
fig|6666666.229936.peg.1048 CDS CP008984.1 1002414 1001626 -3 - 789 ATP synthase F0 sector subunit a - none -
fig|6666666.229936.peg.1049 CDS CP008984.1 1002816 1002439 -3 - 378 FIG048548: ATP synthase protein I2 - none -
fig|6666666.229936.peg.1050 CDS CP008984.1 1003611 1002928 -3 - 684 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB Cell Division Subsystem including YidCD;
RNA methylation;
RNA modification and chromosome partitioning cluster
fig|6666666.229936.peg.1051 CDS CP008984.1 1003966 1003604 -1 - 363 Redox-sensing transcriptional regulator QorR NADPH:quinone oxidoreductase 2
fig|6666666.229936.peg.1052 CDS CP008984.1 1004217 1004975 3 + 759 NADPH:quinone oxidoreductase 2 NADPH:quinone oxidoreductase 2
fig|6666666.229936.peg.1053 CDS CP008984.1 1007136 1005247 -3 - 1890 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA Cell Division Subsystem including YidCD;
RNA modification and chromosome partitioning cluster;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229936.peg.1054 CDS CP008984.1 1008022 1007579 -1 - 444 Flavoprotein MioC Flavodoxin
fig|6666666.229936.peg.1055 CDS CP008984.1 1008297 1008079 -3 - 219 FIG074102: hypothetical protein - none -
fig|6666666.229936.peg.1056 CDS CP008984.1 1008482 1009495 2 + 1014 Fructose-1,6-bisphosphatase, GlpX type (EC 3.1.3.11) Glycolysis and Gluconeogenesis
fig|6666666.229936.peg.1057 CDS CP008984.1 1010933 1010136 -2 - 798 Serine acetyltransferase (EC 2.3.1.30) Cysteine Biosynthesis;
Methionine Biosynthesis
fig|6666666.229936.peg.1058 CDS CP008984.1 1011949 1010936 -1 - 1014 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) Glutaredoxin 3 containing cluster;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229936.peg.1059 CDS CP008984.1 1012539 1012027 -3 - 513 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) Glutaredoxin 3 containing cluster
fig|6666666.229936.peg.1060 CDS CP008984.1 1012977 1012555 -3 - 423 FIG136845: Rhodanese-related sulfurtransferase Glutaredoxin 3 containing cluster
fig|6666666.229936.peg.1061 CDS CP008984.1 1013323 1014645 1 + 1323 Anaerobic C4-dicarboxylate membrane transporter DcuA - none -
fig|6666666.229936.peg.1062 CDS CP008984.1 1014814 1016562 1 + 1749 Transport ATP-binding protein CydD Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229936.peg.1063 CDS CP008984.1 1016579 1018213 2 + 1635 ABC transporter ATP-binding protein - none -
fig|6666666.229936.peg.1064 CDS CP008984.1 1018945 1018325 -1 - 621 Unsaturated fatty acid biosythesis repressor FabR, TetR family - none -
fig|6666666.229936.peg.1065 CDS CP008984.1 1019856 1018957 -3 - 900 Hydrogen peroxide-inducible genes activator LysR-family proteins in Escherichia coli;
LysR-family proteins in Salmonella enterica Typhimurium;
Oxidative stress;
Thioredoxin-disulfide reductase
fig|6666666.229936.peg.1066 CDS CP008984.1 1020015 1020743 3 + 729 Peroxiredoxin family protein/glutaredoxin - none -
fig|6666666.229936.peg.1067 CDS CP008984.1 1021019 1020804 -2 - 216 Protein SlyX - none -
fig|6666666.229936.peg.1068 CDS CP008984.1 1021114 1021839 1 + 726 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase;
Potassium homeostasis
fig|6666666.229936.peg.1069 CDS CP008984.1 1021919 1022587 2 + 669 YheO-like PAS domain - none -
fig|6666666.229936.peg.1070 CDS CP008984.1 1022591 1022968 2 + 378 tRNA 5-methylaminomethyl-2-thiouridine synthase TusD CBSS-326442.4.peg.1852;
Sulfite reduction-associated complex DsrMKJOP and co-clustering genes;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.229936.peg.1071 CDS CP008984.1 1022965 1023327 1 + 363 tRNA 5-methylaminomethyl-2-thiouridine synthase TusC CBSS-326442.4.peg.1852;
Sulfite reduction-associated complex DsrMKJOP and co-clustering genes;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.229936.peg.1072 CDS CP008984.1 1023330 1023617 3 + 288 tRNA 5-methylaminomethyl-2-thiouridine synthase TusB Sulfite reduction-associated complex DsrMKJOP and co-clustering genes;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.229936.peg.1073 CDS CP008984.1 1024389 1023622 -3 - 768 ABC-type polar amino acid transport system, ATPase component CBSS-326442.4.peg.1852
fig|6666666.229936.peg.1074 CDS CP008984.1 1025082 1024399 -3 - 684 ABC-type amino acid transport system, permease component - none -
fig|6666666.229936.peg.1075 CDS CP008984.1 1025884 1025105 -1 - 780 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain - none -
fig|6666666.229936.peg.1076 CDS CP008984.1 1027305 1026010 -3 - 1296 Glycine/D-amino acid oxidases (deaminating) - none -
fig|6666666.229936.peg.1077 CDS CP008984.1 1028794 1027430 -1 - 1365 lipoprotein, putative - none -
fig|6666666.229936.peg.1078 CDS CP008984.1 1029353 1029499 2 + 147 hypothetical protein - none -
fig|6666666.229936.peg.1079 CDS CP008984.1 1031653 1030739 -1 - 915 N-acetylmuramic acid 6-phosphate etherase - none -
fig|6666666.229936.peg.1080 CDS CP008984.1 1032780 1031650 -3 - 1131 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) Recycling of Peptidoglycan Amino Sugars
fig|6666666.229936.peg.1081 CDS CP008984.1 1032866 1034236 2 + 1371 N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23) / Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157) Peptidoglycan Biosynthesis;
Peptidoglycan Biosynthesis;
Sialic Acid Metabolism;
Sialic Acid Metabolism;
Transcription repair cluster;
Transcription repair cluster;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229936.peg.1082 CDS CP008984.1 1035479 1034388 -2 - 1092 Putative exported protein precursor - none -
fig|6666666.229936.peg.1083 CDS CP008984.1 1036366 1035617 -1 - 750 Deoxyribose operon repressor, DeoR family Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.229936.peg.1084 CDS CP008984.1 1037065 1036394 -1 - 672 Deoxyribose-phosphate aldolase (EC 4.1.2.4) Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.229936.peg.1085 CDS CP008984.1 1037926 1037567 -1 - 360 Mobile element protein - none -
fig|6666666.229936.peg.1086 CDS CP008984.1 1038338 1038159 -2 - 180 Integrase - none -
fig|6666666.229936.peg.1087 CDS CP008984.1 1039346 1039116 -2 - 231 hypothetical protein - none -
fig|6666666.229936.peg.1088 CDS CP008984.1 1042078 1039343 -1 - 2736 Putative uncharacterized protein ydbH - none -
fig|6666666.229936.peg.1089 CDS CP008984.1 1042801 1042184 -1 - 618 Multiple antibiotic resistance protein marC - none -
fig|6666666.229936.peg.1090 CDS CP008984.1 1042882 1044333 1 + 1452 Glutathione-regulated potassium-efflux system ATP-binding protein Potassium homeostasis
fig|6666666.229936.peg.1091 CDS CP008984.1 1044305 1044769 2 + 465 Glutathione-regulated potassium-efflux system ATP-binding protein Potassium homeostasis
fig|6666666.229936.peg.1092 CDS CP008984.1 1044917 1045975 2 + 1059 RecA protein DNA repair, bacterial;
DNA repair, bacterial RecFOR pathway;
DNA repair system including RecA, MutS and a hypothetical protein;
RecA and RecX
fig|6666666.229936.peg.1093 CDS CP008984.1 1046057 1046515 2 + 459 Regulatory protein RecX DNA repair system including RecA, MutS and a hypothetical protein;
RecA and RecX
fig|6666666.229936.peg.1094 CDS CP008984.1 1046592 1046981 3 + 390 Endoribonuclease L-PSP - none -
fig|6666666.229936.peg.1095 CDS CP008984.1 1049050 1047053 -1 - 1998 Transketolase (EC 2.2.1.1) Pentose phosphate pathway
fig|6666666.229936.peg.1096 CDS CP008984.1 1050136 1049183 -1 - 954 Transaldolase (EC 2.2.1.2) Fructose utilization;
Pentose phosphate pathway
fig|6666666.229936.peg.1097 CDS CP008984.1 1056939 1056121 -3 - 819 Peptide transport system ATP-binding protein SapF - none -
fig|6666666.229936.peg.1098 CDS CP008984.1 1057995 1056943 -3 - 1053 Peptide transport system ATP-binding protein SapD - none -
fig|6666666.229936.peg.1099 CDS CP008984.1 1058890 1058003 -1 - 888 Peptide transport system permease protein SapC - none -
fig|6666666.229936.peg.1100 CDS CP008984.1 1059845 1058880 -2 - 966 Peptide transport system permease protein SapB - none -
fig|6666666.229936.peg.1101 CDS CP008984.1 1061476 1059845 -1 - 1632 Peptide transport periplasmic protein sapA (TC 3.A.1.5.5) - none -
fig|6666666.229936.peg.1102 CDS CP008984.1 1061742 1063157 3 + 1416 Conserved protein YcjX with nucleoside triphosphate hydrolase domain A conserved operon linked to TyrR and possibly involved in virulence
fig|6666666.229936.peg.1103 CDS CP008984.1 1063171 1064250 1 + 1080 Membrane protein YcjF A conserved operon linked to TyrR and possibly involved in virulence
fig|6666666.229936.peg.1104 CDS CP008984.1 1064334 1065293 3 + 960 Transcriptional repressor protein TyrR Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate);
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229936.peg.1105 CDS CP008984.1 1065424 1065290 -1 - 135 hypothetical protein - none -
fig|6666666.229936.peg.1106 CDS CP008984.1 1065658 1065509 -1 - 150 GTP-binding protein HflX Hfl operon;
Universal GTPases
fig|6666666.229936.peg.1107 CDS CP008984.1 1065969 1065673 -3 - 297 RNA-binding protein Hfq Hfl operon;
Polyadenylation bacterial
fig|6666666.229936.peg.1108 CDS CP008984.1 1067033 1066089 -2 - 945 tRNA dimethylallyltransferase (EC 2.5.1.75) tRNA modification Bacteria;
tRNA processing
fig|6666666.229936.peg.1109 CDS CP008984.1 1068898 1067048 -1 - 1851 DNA mismatch repair protein MutL DNA repair, bacterial MutL-MutS system
fig|6666666.229936.peg.1110 CDS CP008984.1 1070385 1068898 -3 - 1488 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) Murein Hydrolases;
Recycling of Peptidoglycan Amino Acids
fig|6666666.229936.peg.1111 CDS CP008984.1 1070876 1070382 -2 - 495 TsaE protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA Scaffold proteins for [4Fe-4S] cluster assembly (MRP family);
YjeE;
YrdC-YciO-Sua5 protein family
fig|6666666.229936.peg.1112 CDS CP008984.1 1070851 1070979 1 + 129 hypothetical protein - none -
fig|6666666.229936.peg.1113 CDS CP008984.1 1072825 1071032 -1 - 1794 Mlr4739 protein - none -
fig|6666666.229936.peg.1114 CDS CP008984.1 1074133 1073213 -1 - 921 RfbJ protein - none -
fig|6666666.229936.peg.1115 CDS CP008984.1 1075649 1074141 -2 - 1509 conserved domain protein - none -
fig|6666666.229936.peg.1116 CDS CP008984.1 1076253 1075636 -3 - 618 Glycerate kinase (EC 2.7.1.31) D-galactarate, D-glucarate and D-glycerate catabolism;
D-galactarate, D-glucarate and D-glycerate catabolism - gjo;
Glycerate metabolism;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Glycine and Serine Utilization;
Serine-glyoxylate cycle
fig|6666666.229936.peg.1117 CDS CP008984.1 1077796 1076282 -1 - 1515 Dca - none -
fig|6666666.229936.peg.1118 CDS CP008984.1 1078863 1078315 -3 - 549 3@1-to-5@1 oligoribonuclease (orn) RNA processing and degradation, bacterial
fig|6666666.229936.peg.1119 CDS CP008984.1 1078934 1079974 2 + 1041 Ribosome small subunit-stimulated GTPase EngC Universal GTPases
fig|6666666.229936.peg.1120 CDS CP008984.1 1080195 1080452 3 + 258 Phosphotransferase system, phosphocarrier protein HPr Fructose utilization
fig|6666666.229936.peg.1121 CDS CP008984.1 1080566 1082293 2 + 1728 Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) Fructose utilization
fig|6666666.229936.peg.1122 CDS CP008984.1 1082354 1082854 2 + 501 PTS system, glucose-specific IIA component - none -
fig|6666666.229936.peg.1123 CDS CP008984.1 1085019 1082980 -3 - 2040 Oligopeptidase A (EC 3.4.24.70) Protein degradation
fig|6666666.229936.peg.1124 CDS CP008984.1 1085161 1085526 1 + 366 FIG039061: hypothetical protein related to heme utilization - none -
fig|6666666.229936.peg.1125 CDS CP008984.1 1085582 1087120 2 + 1539 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229936.peg.1126 CDS CP008984.1 1087982 1087395 -2 - 588 Aminodeoxychorismate lyase (EC 4.1.3.38) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Folate Biosynthesis;
Tryptophan synthesis
fig|6666666.229936.peg.1127 CDS CP008984.1 1088959 1087985 -1 - 975 Para-aminobenzoate synthase, aminase component (EC 2.6.1.85) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Folate Biosynthesis;
Tryptophan synthesis
fig|6666666.229936.peg.1128 CDS CP008984.1 1089061 1089627 1 + 567 Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Folate Biosynthesis;
Tryptophan synthesis
fig|6666666.229936.peg.1129 CDS CP008984.1 1089783 1090727 3 + 945 Hydroxypyruvate reductase (EC 1.1.1.81) Glycerate metabolism;
Glycolate, glyoxylate interconversions
fig|6666666.229936.peg.1130 CDS CP008984.1 1091270 1092454 2 + 1185 Lipoprotein releasing system transmembrane protein LolC Lipopolysaccharide assembly;
Lipoprotein sorting system
fig|6666666.229936.peg.1131 CDS CP008984.1 1092469 1093155 1 + 687 Lipoprotein releasing system ATP-binding protein LolD Lipopolysaccharide assembly;
Lipoprotein sorting system
fig|6666666.229936.peg.1132 CDS CP008984.1 1093155 1094405 3 + 1251 Lipoprotein releasing system transmembrane protein LolE Lipopolysaccharide assembly;
Lipoprotein sorting system
fig|6666666.229936.peg.1133 CDS CP008984.1 1094506 1095585 1 + 1080 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha (EC 2.5.1.54) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229936.peg.1134 CDS CP008984.1 1095716 1095594 -2 - 123 hypothetical protein - none -
fig|6666666.229936.peg.1135 CDS CP008984.1 1095731 1097137 2 + 1407 Replicative DNA helicase (EC 3.6.1.-) - none -
fig|6666666.229936.peg.1136 CDS CP008984.1 1097161 1098243 1 + 1083 Alanine racemase (EC 5.1.1.1) ## biosynthetic Alanine biosynthesis;
Pyruvate Alanine Serine Interconversions
fig|6666666.229936.peg.1137 CDS CP008984.1 1098259 1099908 1 + 1650 Glucose-6-phosphate isomerase (EC 5.3.1.9) Glycolysis and Gluconeogenesis
fig|6666666.229936.peg.1138 CDS CP008984.1 1100048 1100521 2 + 474 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster
fig|6666666.229936.peg.1139 CDS CP008984.1 1100528 1100953 2 + 426 Transcription termination protein NusB Riboflavin synthesis cluster;
Transcription factors bacterial
fig|6666666.229936.peg.1140 CDS CP008984.1 1100972 1101955 2 + 984 Thiamine-monophosphate kinase (EC 2.7.4.16) 5-FCL-like protein;
Riboflavin synthesis cluster;
Thiamin biosynthesis
fig|6666666.229936.peg.1141 CDS CP008984.1 1101965 1102456 2 + 492 Phosphatidylglycerophosphatase A (EC 3.1.3.27) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Riboflavin synthesis cluster
fig|6666666.229936.peg.1142 CDS CP008984.1 1102465 1103088 1 + 624 L-lysine permease - none -
fig|6666666.229936.peg.1143 CDS CP008984.1 1103110 1103922 1 + 813 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229936.peg.1144 CDS CP008984.1 1104337 1104089 -1 - 249 Ferredoxin Soluble cytochromes and functionally related electron carriers
fig|6666666.229936.peg.1145 CDS CP008984.1 1104674 1104405 -2 - 270 hypothetical protein - none -
fig|6666666.229936.peg.1146 CDS CP008984.1 1105826 1104696 -2 - 1131 Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) Ribonucleotide reduction
fig|6666666.229936.peg.1147 CDS CP008984.1 1106684 1106028 -2 - 657 hypothetical protein - none -
fig|6666666.229936.peg.1148 CDS CP008984.1 1109008 1106738 -1 - 2271 Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) Ribonucleotide reduction
fig|6666666.229936.peg.1149 CDS CP008984.1 1109345 1109217 -2 - 129 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229936.peg.1150 CDS CP008984.1 1110783 1109311 -3 - 1473 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.229936.peg.1151 CDS CP008984.1 1110921 1111043 3 + 123 hypothetical protein - none -
fig|6666666.229936.peg.1152 CDS CP008984.1 1111054 1112082 1 + 1029 Ferric iron ABC transporter, iron-binding protein Iron acquisition in Streptococcus
fig|6666666.229936.peg.1153 CDS CP008984.1 1112134 1114167 1 + 2034 Ferric iron ABC transporter, permease protein Iron acquisition in Streptococcus
fig|6666666.229936.peg.1154 CDS CP008984.1 1114151 1115191 2 + 1041 Sulfate and thiosulfate import ATP-binding protein CysA (EC 3.6.3.25) Cysteine Biosynthesis;
Uptake of selenate and selenite
fig|6666666.229936.peg.1155 CDS CP008984.1 1117302 1115251 -3 - 2052 Periplasmic alpha-amylase (EC 3.2.1.1) Maltose and Maltodextrin Utilization
fig|6666666.229936.peg.1156 CDS CP008984.1 1118287 1117397 -1 - 891 Maltose/maltodextrin ABC transporter, permease protein MalG Maltose and Maltodextrin Utilization
fig|6666666.229936.peg.1157 CDS CP008984.1 1119853 1118309 -1 - 1545 Maltose/maltodextrin ABC transporter, permease protein MalF Maltose and Maltodextrin Utilization
fig|6666666.229936.peg.1158 CDS CP008984.1 1120008 1119877 -3 - 132 hypothetical protein - none -
fig|6666666.229936.peg.1159 CDS CP008984.1 1121167 1119977 -1 - 1191 Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein MalE Alpha-Amylase locus in Streptocococcus;
Bacterial Chemotaxis;
Maltose and Maltodextrin Utilization
fig|6666666.229936.peg.1160 CDS CP008984.1 1121624 1122742 2 + 1119 Maltose/maltodextrin transport ATP-binding protein MalK (EC 3.6.3.19) Maltose and Maltodextrin Utilization
fig|6666666.229936.peg.1161 CDS CP008984.1 1122819 1124102 3 + 1284 Maltoporin (maltose/maltodextrin high-affinity receptor, phage lambda receptor protein) Maltose and Maltodextrin Utilization
fig|6666666.229936.peg.1162 CDS CP008984.1 1124188 1125087 1 + 900 Maltose operon periplasmic protein MalM Maltose and Maltodextrin Utilization
fig|6666666.229936.peg.1163 CDS CP008984.1 1125158 1125289 2 + 132 hypothetical protein - none -
fig|6666666.229936.peg.1164 CDS CP008984.1 1126196 1125465 -2 - 732 Molybdopterin biosynthesis protein MoeB Molybdenum cofactor biosynthesis
fig|6666666.229936.peg.1165 CDS CP008984.1 1127426 1126212 -2 - 1215 Molybdopterin biosynthesis protein MoeA Molybdenum cofactor biosynthesis
fig|6666666.229936.peg.1166 CDS CP008984.1 1127555 1128211 2 + 657 GTP cyclohydrolase I (EC 3.5.4.16) type 1 Folate Biosynthesis;
Folate biosynthesis cluster;
Molybdenum cofactor biosynthesis;
Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229936.peg.1167 CDS CP008984.1 1129754 1128312 -2 - 1443 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) Metallocarboxypeptidases (EC 3.4.17.-);
Murein Hydrolases;
Peptidoglycan Biosynthesis
fig|6666666.229936.peg.1168 CDS CP008984.1 1129914 1130390 3 + 477 Transcription elongation factor GreA Transcription factors bacterial
fig|6666666.229936.peg.1169 CDS CP008984.1 1130765 1130463 -2 - 303 FIG004454: RNA binding protein - none -
fig|6666666.229936.peg.1170 CDS CP008984.1 1130933 1131232 2 + 300 Phage-related protein - none -
fig|6666666.229936.peg.1171 CDS CP008984.1 1131229 1131525 1 + 297 FIG045511: hypothetical antitoxin (to FIG022160: hypothetical toxin) - none -
fig|6666666.229936.peg.1172 CDS CP008984.1 1132172 1131558 -2 - 615 Riboflavin synthase eubacterial/eukaryotic (EC 2.5.1.9) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster;
riboflavin to FAD
fig|6666666.229936.peg.1173 CDS CP008984.1 1132199 1133596 2 + 1398 Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps Multidrug Resistance Efflux Pumps;
Riboflavin, FMN and FAD metabolism in plants
fig|6666666.229936.peg.1174 CDS CP008984.1 1134379 1133900 -1 - 480 Cys-tRNA(Pro) deacylase YbaK tRNA aminoacylation, Pro
fig|6666666.229936.peg.1175 CDS CP008984.1 1134440 1135243 2 + 804 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch;
Threonine and Homoserine Biosynthesis
fig|6666666.229936.peg.1176 CDS CP008984.1 1135228 1135677 1 + 450 Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229936.peg.1177 CDS CP008984.1 1135646 1136449 2 + 804 Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229936.peg.1178 CDS CP008984.1 1136452 1137066 1 + 615 ABC transporter ATP-binding protein - none -
fig|6666666.229936.peg.1179 CDS CP008984.1 1137063 1137923 3 + 861 Molybdenum transport system protein ModD Molybdenum cofactor biosynthesis
fig|6666666.229936.peg.1180 CDS CP008984.1 1137997 1138143 1 + 147 hypothetical protein - none -
fig|6666666.229936.peg.1181 CDS CP008984.1 1138220 1139668 2 + 1449 TldD protein, part of TldE/TldD proteolytic complex CBSS-354.1.peg.2917;
Putative TldE-TldD proteolytic complex
fig|6666666.229936.peg.1182 CDS CP008984.1 1139719 1145490 1 + 5772 FIG00904191: hypothetical protein - none -
fig|6666666.229936.peg.1183 CDS CP008984.1 1145623 1146672 1 + 1050 Putative membrane protein YeiH - none -
fig|6666666.229936.peg.1184 CDS CP008984.1 1146792 1149149 3 + 2358 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) DNA uptake cluster;
Peptidoglycan Biosynthesis;
Type IV pilus
fig|6666666.229936.peg.1185 CDS CP008984.1 1149933 1149259 -3 - 675 3-keto-L-gulonate 6-phosphate decarboxylase L-ascorbate utilization (and related gene clusters)
fig|6666666.229936.peg.1186 CDS CP008984.1 1150471 1150010 -1 - 462 Ascorbate-specific PTS system, EIIA component (EC 2.7.1.-) L-ascorbate utilization (and related gene clusters)
fig|6666666.229936.peg.1187 CDS CP008984.1 1152298 1150526 -1 - 1773 Ascorbate-specific PTS system, EIIC component L-ascorbate utilization (and related gene clusters)
fig|6666666.229936.peg.1188 CDS CP008984.1 1152646 1153737 1 + 1092 Probable L-ascorbate-6-phosphate lactonase UlaG (EC 3.1.1.-) (L-ascorbate utilization protein G) L-ascorbate utilization (and related gene clusters)
fig|6666666.229936.peg.1189 CDS CP008984.1 1153829 1154578 2 + 750 Ascorbate utilization transcriptional regulator UlaR, HTH-type L-ascorbate utilization (and related gene clusters)
fig|6666666.229936.peg.1190 CDS CP008984.1 1154619 1155479 3 + 861 L-xylulose 5-phosphate 3-epimerase (EC 5.1.3.-) L-ascorbate utilization (and related gene clusters)
fig|6666666.229936.peg.1191 CDS CP008984.1 1155473 1156168 2 + 696 L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) L-ascorbate utilization (and related gene clusters)
fig|6666666.229936.peg.1192 CDS CP008984.1 1157465 1156251 -2 - 1215 Tyrosine-specific transport protein - none -
fig|6666666.229936.peg.1193 CDS CP008984.1 1157727 1157954 3 + 228 Beta-galactosidase (EC 3.2.1.23) Galactosylceramide and Sulfatide metabolism;
Lactose and Galactose Uptake and Utilization;
Lactose utilization
fig|6666666.229936.peg.1194 CDS CP008984.1 1158481 1158218 -1 - 264 Glutaredoxin 1 Glutaredoxins;
Glutathione: Redox cycle
fig|6666666.229936.peg.1195 CDS CP008984.1 1158608 1159342 2 + 735 Oxygen-insensitive NADPH nitroreductase (EC 1.-.-.-) - none -
fig|6666666.229936.peg.1196 CDS CP008984.1 1159361 1160266 2 + 906 Ribosomal protein S6 glutaminyl transferase Ribosome biogenesis bacterial
fig|6666666.229936.peg.1197 CDS CP008984.1 1161167 1160562 -2 - 606 FIG026291: Hypothetical periplasmic protein - none -
fig|6666666.229936.peg.1198 CDS CP008984.1 1162665 1161271 -3 - 1395 Fumarate hydratase class II (EC 4.2.1.2) TCA Cycle
fig|6666666.229936.peg.1199 CDS CP008984.1 1162875 1163324 3 + 450 DNA polymerase III chi subunit (EC 2.7.7.7) CBSS-208964.1.peg.3826
fig|6666666.229936.peg.1200 CDS CP008984.1 1163363 1163491 2 + 129 RNA-binding domain protein - none -
fig|6666666.229936.peg.1201 CDS CP008984.1 1163519 1163647 2 + 129 RNA-binding domain protein - none -
fig|6666666.229936.peg.1202 CDS CP008984.1 1164366 1167230 3 + 2865 Valyl-tRNA synthetase (EC 6.1.1.9) CBSS-208964.1.peg.3826;
tRNA aminoacylation, Val
fig|6666666.229936.peg.1203 CDS CP008984.1 1167297 1168190 3 + 894 hypothetical protein - none -
fig|6666666.229936.peg.1204 CDS CP008984.1 1168309 1168187 -1 - 123 HipA protein Persister Cells
fig|6666666.229936.peg.1205 CDS CP008984.1 1168425 1168309 -3 - 117 HipA protein Persister Cells
fig|6666666.229936.peg.1206 CDS CP008984.1 1168757 1168419 -2 - 339 HipA protein Persister Cells
fig|6666666.229936.peg.1207 CDS CP008984.1 1169088 1168807 -3 - 282 HipB protein Persister Cells
fig|6666666.229936.peg.1208 CDS CP008984.1 1170746 1169232 -2 - 1515 Inner membrane component of tripartite multidrug resistance system Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria
fig|6666666.229936.peg.1209 CDS CP008984.1 1171919 1170759 -2 - 1161 Membrane fusion component of tripartite multidrug resistance system Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria
fig|6666666.229936.peg.1210 CDS CP008984.1 1172128 1172610 1 + 483 Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1) Oxidative stress;
Oxidative stress;
Oxidative stress
fig|6666666.229936.peg.1211 CDS CP008984.1 1174708 1172729 -1 - 1980 Exoribonuclease II (EC 3.1.13.1) RNA processing and degradation, bacterial
fig|6666666.229936.peg.1212 CDS CP008984.1 1175569 1174781 -1 - 789 Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9) Fatty Acid Biosynthesis FASII
fig|6666666.229936.peg.1213 CDS CP008984.1 1176517 1175660 -1 - 858 FIG137478: Hypothetical protein YbgI - none -
fig|6666666.229936.peg.1214 CDS CP008984.1 1177314 1176640 -3 - 675 Queuosine Biosynthesis QueE Radical SAM Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229936.peg.1215 CDS CP008984.1 1177700 1177275 -2 - 426 6-carboxytetrahydropterin synthase (EC 4.1.2.50) @ Queuosine biosynthesis QueD, PTPS-I Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229936.peg.1216 CDS CP008984.1 1179398 1177890 -2 - 1509 Lysyl-tRNA synthetase (class II) (EC 6.1.1.6) tRNA aminoacylation, Lys
fig|6666666.229936.peg.1217 CDS CP008984.1 1180357 1179455 -1 - 903 Peptide chain release factor 2; programmed frameshift-containing Programmed frameshift;
Programmed frameshift;
Translation termination factors bacterial
fig|6666666.229936.peg.1218 CDS CP008984.1 1180637 1180476 -2 - 162 hypothetical protein - none -
fig|6666666.229936.peg.1219 CDS CP008984.1 1180721 1181404 2 + 684 Thiol:disulfide interchange protein DsbC Periplasmic disulfide interchange
fig|6666666.229936.peg.1220 CDS CP008984.1 1181417 1183138 2 + 1722 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) DNA Repair Base Excision;
DNA repair, bacterial RecFOR pathway
fig|6666666.229936.peg.1221 CDS CP008984.1 1183171 1183818 1 + 648 Thiol-disulfide isomerase and thioredoxins - none -
fig|6666666.229936.peg.1222 CDS CP008984.1 1183835 1184527 2 + 693 5@1-methylthioadenosine nucleosidase (EC 3.2.2.16) / S-adenosylhomocysteine nucleosidase (EC 3.2.2.9) Adenosyl nucleosidases;
Adenosyl nucleosidases;
Methionine Biosynthesis;
Methionine Degradation;
Polyamine Metabolism
fig|6666666.229936.peg.1223 CDS CP008984.1 1184706 1185401 3 + 696 Additional periplasmic component NikK of nickel ECF transporter Transport of Nickel and Cobalt
fig|6666666.229936.peg.1224 CDS CP008984.1 1185408 1185911 3 + 504 Additional component NikL of nickel ECF transporter Transport of Nickel and Cobalt
fig|6666666.229936.peg.1225 CDS CP008984.1 1185911 1186564 2 + 654 Substrate-specific component NikM of nickel ECF transporter ECF class transporters;
Transport of Nickel and Cobalt
fig|6666666.229936.peg.1226 CDS CP008984.1 1186561 1187256 1 + 696 Transmembrane component NikQ of energizing module of nickel ECF transporter ECF class transporters;
Transport of Nickel and Cobalt
fig|6666666.229936.peg.1227 CDS CP008984.1 1187222 1187845 2 + 624 ATPase component NikO of energizing module of nickel ECF transporter ECF class transporters;
Transport of Nickel and Cobalt
fig|6666666.229936.peg.1228 CDS CP008984.1 1187924 1188733 2 + 810 [NiFe] hydrogenase nickel incorporation-associated protein HypB G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229936.peg.1229 CDS CP008984.1 1188760 1189872 1 + 1113 [NiFe] hydrogenase metallocenter assembly protein HypD G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229936.peg.1230 CDS CP008984.1 1189872 1190423 3 + 552 [NiFe] hydrogenase metallocenter assembly protein HypE G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229936.peg.1231 CDS CP008984.1 1192006 1192644 1 + 639 transposase - none -
fig|6666666.229936.peg.1232 CDS CP008984.1 1194947 1194132 -2 - 816 Shikimate 5-dehydrogenase I gamma (EC 1.1.1.25) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229936.peg.1233 CDS CP008984.1 1195981 1195097 -1 - 885 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) 5-FCL-like protein;
Methionine Biosynthesis;
One-carbon metabolism by tetrahydropterines;
Serine-glyoxylate cycle
fig|6666666.229936.peg.1234 CDS CP008984.1 1197223 1196156 -1 - 1068 FIG000906: Predicted Permease CBSS-208964.1.peg.3826
fig|6666666.229936.peg.1235 CDS CP008984.1 1198346 1197228 -2 - 1119 FIG000988: Predicted permease CBSS-208964.1.peg.3826
fig|6666666.229936.peg.1236 CDS CP008984.1 1198483 1199973 1 + 1491 Cytosol aminopeptidase PepA (EC 3.4.11.1) Aminopeptidases (EC 3.4.11.-);
CBSS-208964.1.peg.3826;
Dehydrogenase complexes
fig|6666666.229936.peg.1237 CDS CP008984.1 1201179 1200118 -3 - 1062 Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229936.peg.1238 CDS CP008984.1 1201894 1201166 -1 - 729 Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229936.peg.1239 CDS CP008984.1 1202737 1201973 -1 - 765 Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1) Molybdenum cofactor biosynthesis
fig|6666666.229936.peg.1240 CDS CP008984.1 1202964 1203743 3 + 780 DNA-binding domain of ModE / Molybdate-binding domain of ModE Molybdenum cofactor biosynthesis;
Molybdenum cofactor biosynthesis
fig|6666666.229936.peg.1241 CDS CP008984.1 1203964 1205307 1 + 1344 Arsenic efflux pump protein Arsenic resistance
fig|6666666.229936.peg.1242 CDS CP008984.1 1205970 1205374 -3 - 597 Nucleotidase YfbR, HD superfamily Housecleaning nucleoside triphosphate pyrophosphatases
fig|6666666.229936.peg.1243 CDS CP008984.1 1207007 1205979 -2 - 1029 Outer membrane stress sensor protease DegS Periplasmic Stress Response;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229936.peg.1244 CDS CP008984.1 1208140 1207016 -1 - 1125 Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster;
Riboflavin synthesis cluster
fig|6666666.229936.peg.1245 CDS CP008984.1 1208592 1208140 -3 - 453 Ribonucleotide reductase transcriptional regulator NrdR Ribonucleotide reduction
fig|6666666.229936.peg.1246 CDS CP008984.1 1209770 1208709 -2 - 1062 LSU rRNA 2@1-O-methyl-C2498 methyltransferase RlmM RNA methylation
fig|6666666.229936.peg.1247 CDS CP008984.1 1210695 1209790 -3 - 906 Glycine cleavage system transcriptional activator GcvA LysR-family proteins in Escherichia coli;
Orphan regulatory proteins
fig|6666666.229936.peg.1248 CDS CP008984.1 1211157 1212176 3 + 1020 Branched-chain amino acid aminotransferase (EC 2.6.1.42) Alanine biosynthesis;
Pyruvate Alanine Serine Interconversions
fig|6666666.229936.peg.1249 CDS CP008984.1 1212544 1213284 1 + 741 FIG00698611: hypothetical protein - none -
fig|6666666.229936.peg.1250 CDS CP008984.1 1214375 1213440 -2 - 936 Malate dehydrogenase (EC 1.1.1.37) Serine-glyoxylate cycle;
TCA Cycle
fig|6666666.229936.peg.1251 CDS CP008984.1 1214631 1215098 3 + 468 Arginine pathway regulatory protein ArgR, repressor of arg regulon Arginine Deiminase Pathway;
Arginine and Ornithine Degradation
fig|6666666.229936.peg.1252 CDS CP008984.1 1215122 1216009 2 + 888 Cell division inhibitor CBSS-83333.1.peg.946;
Persister Cells
fig|6666666.229936.peg.1253 CDS CP008984.1 1216200 1216781 3 + 582 Electron transport complex protein RnfA Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229936.peg.1254 CDS CP008984.1 1216781 1217371 2 + 591 Electron transport complex protein RnfB Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229936.peg.1255 CDS CP008984.1 1217372 1219324 2 + 1953 Electron transport complex protein RnfC Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229936.peg.1256 CDS CP008984.1 1219335 1220414 3 + 1080 Electron transport complex protein RnfD Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229936.peg.1257 CDS CP008984.1 1220421 1221041 3 + 621 Electron transport complex protein RnfG Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229936.peg.1258 CDS CP008984.1 1221034 1221819 1 + 786 Electron transport complex protein RnfE Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229936.peg.1259 CDS CP008984.1 1221966 1222601 3 + 636 Endonuclease III (EC 4.2.99.18) DNA Repair Base Excision
fig|6666666.229936.peg.1260 CDS CP008984.1 1222626 1223993 3 + 1368 sodium-dependent transporter - none -
fig|6666666.229936.peg.1261 CDS CP008984.1 1225173 1224388 -3 - 786 Zinc ABC transporter, inner membrane permease protein ZnuB - none -
fig|6666666.229936.peg.1262 CDS CP008984.1 1225958 1225185 -2 - 774 Zinc ABC transporter, ATP-binding protein ZnuC - none -
fig|6666666.229936.peg.1263 CDS CP008984.1 1226147 1227679 2 + 1533 Cell wall endopeptidase, family M23/M37 Glutaredoxins
fig|6666666.229936.peg.1264 CDS CP008984.1 1228545 1227787 -3 - 759 Iron(III) dicitrate transport ATP-binding protein FecE (TC 3.A.1.14.1) - none -
fig|6666666.229936.peg.1265 CDS CP008984.1 1229480 1228557 -2 - 924 Ferric vibriobactin, enterobactin transport system, permease protein VctG (TC 3.A.1.14.6) - none -
fig|6666666.229936.peg.1266 CDS CP008984.1 1230453 1229488 -3 - 966 Ferric anguibactin transport system permease protein fatD - none -
fig|6666666.229936.peg.1267 CDS CP008984.1 1231412 1230513 -2 - 900 Iron compound ABC uptake transporter substrate-binding protein PiuA - none -
fig|6666666.229936.peg.1268 CDS CP008984.1 1231667 1231485 -2 - 183 hypothetical protein - none -
fig|6666666.229936.peg.1269 CDS CP008984.1 1231641 1233617 3 + 1977 2@1,3@1-cyclic-nucleotide 2@1-phosphodiesterase (EC 3.1.4.16) Purine conversions;
pyrimidine conversions
fig|6666666.229936.peg.1270 CDS CP008984.1 1234608 1233691 -3 - 918 formate dehydrogenase formation protein FdhE Formate hydrogenase
fig|6666666.229936.peg.1271 CDS CP008984.1 1234856 1234722 -2 - 135 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229936.peg.1272 CDS CP008984.1 1234981 1235397 1 + 417 Protein ygiW precursor - none -
fig|6666666.229936.peg.1273 CDS CP008984.1 1235535 1236404 3 + 870 Two-component system response regulator QseB Orphan regulatory proteins
fig|6666666.229936.peg.1274 CDS CP008984.1 1236481 1236951 1 + 471 hypothetical protein - none -
fig|6666666.229936.peg.1275 CDS CP008984.1 1236955 1237299 1 + 345 phage-related putative DNA-binding protein - none -
fig|6666666.229936.peg.1276 CDS CP008984.1 1237755 1237871 3 + 117 FIG00697497: hypothetical protein - none -
fig|6666666.229936.peg.1277 CDS CP008984.1 1238356 1238475 1 + 120 Two-component system response regulator QseB Orphan regulatory proteins
fig|6666666.229936.peg.1278 CDS CP008984.1 1238462 1239838 2 + 1377 Sensory histidine kinase QseC Orphan regulatory proteins
fig|6666666.229936.peg.1279 CDS CP008984.1 1241692 1239923 -1 - 1770 Gamma-glutamyltranspeptidase (EC 2.3.2.2) Glutathione: Biosynthesis and gamma-glutamyl cycle
fig|6666666.229936.peg.1280 CDS CP008984.1 1242170 1241925 -2 - 246 FIG00696862: hypothetical protein - none -
fig|6666666.229936.peg.1281 CDS CP008984.1 1243697 1242360 -2 - 1338 Argininosuccinate synthase (EC 6.3.4.5) - none -
fig|6666666.229936.peg.1282 CDS CP008984.1 1244619 1243792 -3 - 828 Nucleoside-diphosphate-sugar epimerases - none -
fig|6666666.229936.peg.1283 CDS CP008984.1 1244976 1246559 3 + 1584 Peptide chain release factor 3 Translation termination factors bacterial
fig|6666666.229936.peg.1284 CDS CP008984.1 1246747 1247097 1 + 351 YPPCP.09C homologue - none -
fig|6666666.229936.peg.1285 CDS CP008984.1 1247094 1247393 3 + 300 Putative transcriptional regulator - none -
fig|6666666.229936.peg.1286 CDS CP008984.1 1250362 1247429 -1 - 2934 Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42) Ammonia assimilation;
CBSS-316057.3.peg.3521
fig|6666666.229936.peg.1287 CDS CP008984.1 1250784 1251545 3 + 762 CRISPR-associated protein Cas3@1@1 CRISPRs
fig|6666666.229936.peg.1288 CDS CP008984.1 1251891 1252115 3 + 225 Phosphomethylpyrimidine kinase (EC 2.7.4.7) 5-FCL-like protein;
Thiamin biosynthesis
fig|6666666.229936.peg.1289 CDS CP008984.1 1252313 1253317 2 + 1005 Thiamin ABC transporter, substrate-binding component Thiamin biosynthesis
fig|6666666.229936.peg.1290 CDS CP008984.1 1253326 1254954 1 + 1629 Thiamin ABC transporter, transmembrane component Thiamin biosynthesis
fig|6666666.229936.peg.1291 CDS CP008984.1 1254938 1255585 2 + 648 Thiamin ABC transporter, ATPase component / Thiamine transport ATP-binding protein thiQ Thiamin biosynthesis
fig|6666666.229936.peg.1292 CDS CP008984.1 1255630 1256634 1 + 1005 Biotin synthase (EC 2.8.1.6) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229936.peg.1293 CDS CP008984.1 1258114 1256732 -1 - 1383 Outer membrane stress sensor protease DegQ, serine protease Periplasmic Stress Response;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229936.peg.1294 CDS CP008984.1 1258177 1258347 1 + 171 hypothetical protein - none -
fig|6666666.229936.peg.1295 CDS CP008984.1 1258715 1258305 -2 - 411 probable membrane protein YPO3565 - none -
fig|6666666.229936.peg.1296 CDS CP008984.1 1260649 1258886 -1 - 1764 FIG00696060: hypothetical protein - none -
fig|6666666.229936.peg.1297 CDS CP008984.1 1261945 1260740 -1 - 1206 Mannose-6-phosphate isomerase (EC 5.3.1.8) Mannose Metabolism
fig|6666666.229936.peg.1298 CDS CP008984.1 1262121 1262459 3 + 339 FIG00904093: hypothetical protein - none -
fig|6666666.229936.peg.1299 CDS CP008984.1 1262647 1263288 1 + 642 PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69) Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism;
Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229936.peg.1300 CDS CP008984.1 1263382 1264140 1 + 759 PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69) Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism;
Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229936.peg.1301 CDS CP008984.1 1264896 1264198 -3 - 699 FIG005121: SAM-dependent methyltransferase (EC 2.1.1.-) CBSS-228410.1.peg.134;
CBSS-342610.3.peg.1536;
Glutathione: Non-redox reactions
fig|6666666.229936.peg.1302 CDS CP008984.1 1264917 1265618 3 + 702 Hydroxyacylglutathione hydrolase (EC 3.1.2.6) CBSS-228410.1.peg.134;
CBSS-342610.3.peg.1536;
Glutathione: Non-redox reactions;
Methylglyoxal Metabolism
fig|6666666.229936.peg.1303 CDS CP008984.1 1265803 1267107 1 + 1305 Glutamyl-tRNA reductase (EC 1.2.1.70) A Gammaproteobacteria Cluster Relating to Translation;
Heme and Siroheme Biosynthesis
fig|6666666.229936.peg.1304 CDS CP008984.1 1267169 1268392 2 + 1224 N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family Chitin and N-acetylglucosamine utilization
fig|6666666.229936.peg.1305 CDS CP008984.1 1269773 1269129 -2 - 645 Adenylate kinase (EC 2.7.4.3) Purine conversions
fig|6666666.229936.peg.1306 CDS CP008984.1 1271195 1269906 -2 - 1290 AmpG permease Recycling of Peptidoglycan Amino Acids
fig|6666666.229936.peg.1307 CDS CP008984.1 1271543 1271202 -2 - 342 [NiFe] hydrogenase nickel incorporation protein HybF NiFe hydrogenase maturation
fig|6666666.229936.peg.1308 CDS CP008984.1 1272565 1271549 -1 - 1017 UDP-glucose 4-epimerase (EC 5.1.3.2) Lactose and Galactose Uptake and Utilization;
Rhamnose containing glycans
fig|6666666.229936.peg.1309 CDS CP008984.1 1272759 1273145 3 + 387 Integral membrane protein - none -
fig|6666666.229936.peg.1310 CDS CP008984.1 1273270 1274601 1 + 1332 Guanine-hypoxanthine permease Purine Utilization
fig|6666666.229936.peg.1311 CDS CP008984.1 1275975 1274629 -3 - 1347 tRNA(Ile)-lysidine synthetase (EC 6.3.4.19) Cell division-ribosomal stress proteins cluster;
Folate biosynthesis cluster;
tRNA modification Bacteria;
tRNA processing;
tRNAmodification position 34
fig|6666666.229936.peg.1312 CDS CP008984.1 1276864 1276007 -1 - 858 Pyridoxal kinase (EC 2.7.1.35) Pyridoxin (Vitamin B6) Biosynthesis
fig|6666666.229936.peg.1313 CDS CP008984.1 1277880 1276927 -3 - 954 Acetyl-coenzyme A carboxyl transferase alpha chain (EC 6.4.1.2) Fatty Acid Biosynthesis FASII
fig|6666666.229936.peg.1314 CDS CP008984.1 1279662 1280612 3 + 951 hypothetical protein - none -
fig|6666666.229936.peg.1315 CDS CP008984.1 1281293 1281114 -2 - 180 hypothetical protein - none -
fig|6666666.229936.peg.1316 CDS CP008984.1 1281397 1281534 1 + 138 hypothetical protein - none -
fig|6666666.229936.peg.1317 CDS CP008984.1 1282325 1282597 2 + 273 putative antirepressor protein Ant - none -
fig|6666666.229936.peg.1318 CDS CP008984.1 1282685 1282885 2 + 201 Phage protein - none -
fig|6666666.229936.peg.1319 CDS CP008984.1 1283628 1283086 -3 - 543 Phage Rha protein - none -
fig|6666666.229936.peg.1320 CDS CP008984.1 1284227 1284072 -2 - 156 hypothetical protein - none -
fig|6666666.229936.peg.1321 CDS CP008984.1 1284540 1285064 3 + 525 Phage protein - none -
fig|6666666.229936.peg.1322 CDS CP008984.1 1286303 1285395 -2 - 909 hypothetical protein - none -
fig|6666666.229936.peg.1323 CDS CP008984.1 1287059 1286394 -2 - 666 putative prophage repressor CI - none -
fig|6666666.229936.peg.1324 CDS CP008984.1 1287573 1287761 3 + 189 hypothetical protein - none -
fig|6666666.229936.peg.1325 CDS CP008984.1 1288004 1288117 2 + 114 hypothetical protein - none -
fig|6666666.229936.peg.1326 CDS CP008984.1 1288251 1288123 -3 - 129 hypothetical protein - none -
fig|6666666.229936.peg.1327 CDS CP008984.1 1290183 1288624 -3 - 1560 GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2) Purine conversions
fig|6666666.229936.peg.1328 CDS CP008984.1 1290481 1290215 -1 - 267 YafQ toxin protein Toxin-antitoxin replicon stabilization systems
fig|6666666.229936.peg.1329 CDS CP008984.1 1290765 1290493 -3 - 273 DNA-damage-inducible protein J DNA repair, bacterial;
Toxin-antitoxin replicon stabilization systems
fig|6666666.229936.peg.1330 CDS CP008984.1 1290990 1290805 -3 - 186 hypothetical protein - none -
fig|6666666.229936.peg.1331 CDS CP008984.1 1292372 1291020 -2 - 1353 C4-dicarboxylate transporter DcuC (TC 2.A.61.1.1) Citrate Metabolism, Transport, and Regulation
fig|6666666.229936.peg.1332 CDS CP008984.1 1292811 1293266 3 + 456 FIG000325: clustered with transcription termination protein NusA NusA-TFII Cluster;
Transcription factors bacterial
fig|6666666.229936.peg.1333 CDS CP008984.1 1293290 1294786 2 + 1497 Transcription termination protein NusA NusA-TFII Cluster;
Transcription factors bacterial
fig|6666666.229936.peg.1334 CDS CP008984.1 1294802 1297294 2 + 2493 Translation initiation factor 2 CBSS-138119.3.peg.2719;
NusA-TFII Cluster;
Translation initiation factors bacterial;
Universal GTPases
fig|6666666.229936.peg.1335 CDS CP008984.1 1297579 1299951 1 + 2373 Type III restriction-modification system methylation subunit (EC 2.1.1.72) Restriction-Modification System
fig|6666666.229936.peg.1336 CDS CP008984.1 1300053 1302005 3 + 1953 FIG00698532: hypothetical protein - none -
fig|6666666.229936.peg.1337 CDS CP008984.1 1302002 1304716 2 + 2715 helicase domain protein - none -
fig|6666666.229936.peg.1338 CDS CP008984.1 1304803 1305189 1 + 387 Ribosome-binding factor A CBSS-138119.3.peg.2719;
NusA-TFII Cluster;
Translation initiation factors bacterial
fig|6666666.229936.peg.1339 CDS CP008984.1 1305189 1306106 3 + 918 tRNA pseudouridine synthase B (EC 4.2.1.70) CBSS-138119.3.peg.2719;
RNA pseudouridine syntheses;
Riboflavin, FMN and FAD metabolism in plants;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229936.peg.1340 CDS CP008984.1 1306300 1306148 -1 - 153 hypothetical protein - none -
fig|6666666.229936.peg.1341 CDS CP008984.1 1307004 1306393 -3 - 612 hypothetical protein - none -
fig|6666666.229936.peg.1342 CDS CP008984.1 1308318 1307131 -3 - 1188 Tyrosyl-tRNA synthetase (EC 6.1.1.1) tRNA aminoacylation, Tyr
fig|6666666.229936.peg.1343 CDS CP008984.1 1309291 1308566 -1 - 726 Sugar/maltose fermentation stimulation protein homolog Fermentations: Mixed acid
fig|6666666.229936.peg.1344 CDS CP008984.1 1309584 1311119 3 + 1536 NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2) Phosphate metabolism
fig|6666666.229936.peg.1345 CDS CP008984.1 1311130 1312554 1 + 1425 NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) Phosphate metabolism
fig|6666666.229936.peg.1346 CDS CP008984.1 1312571 1312723 2 + 153 hypothetical protein - none -
fig|6666666.229936.peg.1347 CDS CP008984.1 1313099 1312938 -2 - 162 hypothetical protein - none -
fig|6666666.229936.peg.1348 CDS CP008984.1 1313567 1314415 2 + 849 filamentation induced by cAMP protein Fic-like protein - none -
fig|6666666.229936.peg.1349 CDS CP008984.1 1314927 1316036 3 + 1110 Selenide,water dikinase (EC 2.7.9.3) Selenocysteine metabolism;
tRNA modification Bacteria
fig|6666666.229936.peg.1350 CDS CP008984.1 1316391 1317344 3 + 954 Putative ABC transporter of substrate X, ATP-binding subunit ABC transporter of unknown substrate X
fig|6666666.229936.peg.1351 CDS CP008984.1 1317341 1318210 2 + 870 Putative ABC transporter of substrate X, permease subunit I ABC transporter of unknown substrate X
fig|6666666.229936.peg.1352 CDS CP008984.1 1318207 1319058 1 + 852 Putative ABC transporter of substrate X, permease subunit II ABC transporter of unknown substrate X
fig|6666666.229936.peg.1353 CDS CP008984.1 1319078 1320169 2 + 1092 Possible ABC transporter, periplasmic substrate X binding protein precursor ABC transporter of unknown substrate X
fig|6666666.229936.peg.1354 CDS CP008984.1 1320360 1320220 -3 - 141 Autoinducer 2 (AI-2) ABC transport system, periplasmic AI-2 binding protein LsrB Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229936.peg.1355 CDS CP008984.1 1322385 1320556 -3 - 1830 Excinuclease ABC subunit C DNA repair, UvrABC system
fig|6666666.229936.peg.1356 CDS CP008984.1 1323297 1322524 -3 - 774 3-deoxy-manno-octulosonate cytidylyltransferase (EC 2.7.7.38) KDO2-Lipid A biosynthesis;
KDO2-Lipid A biosynthesis cluster 2
fig|6666666.229936.peg.1357 CDS CP008984.1 1323478 1323299 -1 - 180 FIG002473: Protein YcaR in KDO2-Lipid A biosynthesis cluster Broadly distributed proteins not in subsystems;
KDO2-Lipid A biosynthesis cluster 2
fig|6666666.229936.peg.1358 CDS CP008984.1 1324474 1323500 -1 - 975 Tetraacyldisaccharide 4@1-kinase (EC 2.7.1.130) KDO2-Lipid A biosynthesis;
KDO2-Lipid A biosynthesis cluster 2
fig|6666666.229936.peg.1359 CDS CP008984.1 1326241 1324493 -1 - 1749 Lipid A export ATP-binding/permease protein MsbA (EC 3.6.3.25) KDO2-Lipid A biosynthesis;
KDO2-Lipid A biosynthesis cluster 2
fig|6666666.229936.peg.1360 CDS CP008984.1 1328522 1326288 -2 - 2235 DNA internalization-related competence protein ComEC/Rec2 KDO2-Lipid A biosynthesis;
KDO2-Lipid A biosynthesis cluster 2
fig|6666666.229936.peg.1361 CDS CP008984.1 1329015 1329452 3 + 438 C4-type zinc finger protein, DksA/TraR family - none -
fig|6666666.229936.peg.1362 CDS CP008984.1 1329569 1331035 2 + 1467 Poly(A) polymerase (EC 2.7.7.19) Polyadenylation bacterial
fig|6666666.229936.peg.1363 CDS CP008984.1 1331028 1331528 3 + 501 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) Folate Biosynthesis;
Folate biosynthesis cluster
fig|6666666.229936.peg.1364 CDS CP008984.1 1331745 1331599 -3 - 147 hypothetical protein - none -
fig|6666666.229936.peg.1365 CDS CP008984.1 1331960 1331826 -2 - 135 hypothetical protein - none -
fig|6666666.229936.peg.1366 CDS CP008984.1 1334442 1332307 -3 - 2136 Phosphate acetyltransferase (EC 2.3.1.8) Fermentations: Lactate;
Fermentations: Mixed acid;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229936.peg.1367 CDS CP008984.1 1335714 1334512 -3 - 1203 Acetate kinase (EC 2.7.2.1) Fermentations: Lactate;
Fermentations: Mixed acid;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229936.peg.1368 CDS CP008984.1 1335982 1336425 1 + 444 FIG00638298: membrane protein YfbV - none -
fig|6666666.229936.peg.1369 CDS CP008984.1 1336604 1337146 2 + 543 Colicin V production protein - none -
fig|6666666.229936.peg.1370 CDS CP008984.1 1337268 1337143 -3 - 126 hypothetical protein - none -
fig|6666666.229936.peg.1371 CDS CP008984.1 1339365 1337290 -3 - 2076 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) Glycogen metabolism;
Glycogen metabolism cluster;
Maltose and Maltodextrin Utilization;
Maltose utilization cluster
fig|6666666.229936.peg.1372 CDS CP008984.1 1341865 1339475 -1 - 2391 Maltodextrin phosphorylase (EC 2.4.1.1) Glycogen metabolism;
Maltose and Maltodextrin Utilization;
Maltose utilization cluster
fig|6666666.229936.peg.1373 CDS CP008984.1 1342038 1344752 3 + 2715 Transcriptional activator of maltose regulon, MalT Maltose and Maltodextrin Utilization;
Maltose utilization cluster
fig|6666666.229936.peg.1374 CDS CP008984.1 1345780 1344905 -1 - 876 Tellurite resistance protein TehB Tellurite resistance: Chromosomal determinants
fig|6666666.229936.peg.1375 CDS CP008984.1 1346158 1348815 1 + 2658 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) 5-FCL-like protein;
Dehydrogenase complexes;
Methionine Degradation;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229936.peg.1376 CDS CP008984.1 1348844 1350514 2 + 1671 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) 5-FCL-like protein;
Dehydrogenase complexes;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229936.peg.1377 CDS CP008984.1 1350551 1352032 2 + 1482 Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4) 5-FCL-like protein;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate;
TCA Cycle;
TCA Cycle
fig|6666666.229936.peg.1378 CDS CP008984.1 1353014 1352460 -2 - 555 FIG002003: Protein YdjA - none -
fig|6666666.229936.peg.1379 CDS CP008984.1 1353138 1355018 3 + 1881 Signal peptide peptidase SppA (EC 3.4.21.-) - none -
fig|6666666.229936.peg.1380 CDS CP008984.1 1355059 1355265 1 + 207 Chorismate mutase I (EC 5.4.99.5) / Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) Chorismate Synthesis;
Chorismate Synthesis;
Phenylalanine and Tyrosine Branches from Chorismate;
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229936.peg.1381 CDS CP008984.1 1355244 1355408 3 + 165 Chorismate mutase I (EC 5.4.99.5) / Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) Chorismate Synthesis;
Chorismate Synthesis;
Phenylalanine and Tyrosine Branches from Chorismate;
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229936.peg.1382 CDS CP008984.1 1355363 1356181 2 + 819 Chorismate mutase I (EC 5.4.99.5) / Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) Chorismate Synthesis;
Chorismate Synthesis;
Phenylalanine and Tyrosine Branches from Chorismate;
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229936.peg.1383 CDS CP008984.1 1356255 1356878 3 + 624 Hypothetical YciO protein, TsaC/YrdC paralog YrdC-YciO-Sua5 protein family
fig|6666666.229936.peg.1384 CDS CP008984.1 1356933 1357901 3 + 969 Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70) RNA pseudouridine syntheses
fig|6666666.229936.peg.1385 CDS CP008984.1 1357932 1358903 3 + 972 Cys regulon transcriptional activator CysB Cysteine Biosynthesis;
LysR-family proteins in Escherichia coli
fig|6666666.229936.peg.1386 CDS CP008984.1 1358988 1359815 3 + 828 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229936.peg.1387 CDS CP008984.1 1360250 1359930 -2 - 321 putative cytoplasmic protein - none -
fig|6666666.229936.peg.1388 CDS CP008984.1 1360418 1360284 -2 - 135 hypothetical protein - none -
fig|6666666.229936.peg.1389 CDS CP008984.1 1361719 1360721 -1 - 999 Purine nucleotide synthesis repressor Purine nucleotide synthesis regulator
fig|6666666.229936.peg.1390 CDS CP008984.1 1363128 1362025 -3 - 1104 Homoserine O-acetyltransferase (EC 2.3.1.31) Methionine Biosynthesis
fig|6666666.229936.peg.1391 CDS CP008984.1 1363321 1364034 1 + 714 SanA protein - none -
fig|6666666.229936.peg.1392 CDS CP008984.1 1365004 1364018 -1 - 987 Fructose repressor FruR, LacI family Fructose utilization
fig|6666666.229936.peg.1393 CDS CP008984.1 1365839 1366096 2 + 258 FIG00699498: hypothetical protein - none -
fig|6666666.229936.peg.1394 CDS CP008984.1 1366251 1366132 -3 - 120 FIG00697497: hypothetical protein - none -
fig|6666666.229936.peg.1395 CDS CP008984.1 1367750 1367268 -2 - 483 Thiol:disulfide oxidoreductase associated with MetSO reductase Peptide methionine sulfoxide reductase
fig|6666666.229936.peg.1396 CDS CP008984.1 1368406 1367765 -1 - 642 Cytochrome c-type biogenesis protein CcdA homolog, associated with MetSO reductase Peptide methionine sulfoxide reductase
fig|6666666.229936.peg.1397 CDS CP008984.1 1369480 1368410 -1 - 1071 Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11) / Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) Cluster Ytf and putative sugar transporter;
Peptide methionine sulfoxide reductase;
Peptide methionine sulfoxide reductase;
Putative sugar ABC transporter (ytf cluster)
fig|6666666.229936.peg.1398 CDS CP008984.1 1369696 1370388 1 + 693 Carbonic anhydrase (EC 4.2.1.1) - none -
fig|6666666.229936.peg.1399 CDS CP008984.1 1371081 1370494 -3 - 588 21 kDa hemolysin precursor CBSS-160492.1.peg.550
fig|6666666.229936.peg.1400 CDS CP008984.1 1371730 1371146 -1 - 585 Phosphoheptose isomerase (EC 5.3.1.-) CBSS-160492.1.peg.550;
Capsular heptose biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.229936.peg.1401 CDS CP008984.1 1372111 1371743 -1 - 369 Predicted endonuclease distantly related to archaeal Holliday junction resolvase CBSS-160492.1.peg.550
fig|6666666.229936.peg.1402 CDS CP008984.1 1373830 1372112 -1 - 1719 LppC putative lipoprotein CBSS-160492.1.peg.550
fig|6666666.229936.peg.1403 CDS CP008984.1 1373907 1374755 3 + 849 rRNA small subunit methyltransferase I 16S rRNA modification within P site of ribosome;
CBSS-160492.1.peg.550;
Heat shock dnaK gene cluster extended
fig|6666666.229936.peg.1404 CDS CP008984.1 1375025 1376614 2 + 1590 Glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Respiratory dehydrogenases 1
fig|6666666.229936.peg.1405 CDS CP008984.1 1376791 1378128 1 + 1338 NADH dehydrogenase (EC 1.6.99.3) Respiratory dehydrogenases 1;
Riboflavin synthesis cluster
fig|6666666.229936.peg.1406 CDS CP008984.1 1378821 1378231 -3 - 591 FMN-dependent NADH-azoreductase - none -
fig|6666666.229936.peg.1407 CDS CP008984.1 1379014 1380072 1 + 1059 Possible protease sohB (EC 3.4.21.-) - none -
fig|6666666.229936.peg.1408 CDS CP008984.1 1380262 1381086 1 + 825 Outer membrane protein A precursor Osmoregulation
fig|6666666.229936.peg.1409 CDS CP008984.1 1382020 1381145 -1 - 876 Ribulosamine/erythrulosamine 3-kinase potentially involved in protein deglycation Protein deglycation
fig|6666666.229936.peg.1410 CDS CP008984.1 1382261 1384192 2 + 1932 Threonyl-tRNA synthetase (EC 6.1.1.3) tRNA aminoacylation, Thr
fig|6666666.229936.peg.1411 CDS CP008984.1 1384428 1385168 3 + 741 Type III restriction-modification system methylation subunit (EC 2.1.1.72) Restriction-Modification System
fig|6666666.229936.peg.1412 CDS CP008984.1 1385170 1385307 1 + 138 hypothetical protein - none -
fig|6666666.229936.peg.1413 CDS CP008984.1 1386064 1385285 -1 - 780 Ferredoxin--NADP(+) reductase (EC 1.18.1.2) Biogenesis of cytochrome c oxidases
fig|6666666.229936.peg.1414 CDS CP008984.1 1386439 1386918 1 + 480 Translation initiation factor 3 Translation initiation factors bacterial
fig|6666666.229936.peg.1415 CDS CP008984.1 1387062 1386919 -3 - 144 hypothetical protein - none -
fig|6666666.229936.peg.1416 CDS CP008984.1 1387393 1387746 1 + 354 LSU ribosomal protein L20p - none -
fig|6666666.229936.peg.1417 CDS CP008984.1 1389250 1389131 -1 - 120 hypothetical protein - none -
fig|6666666.229936.peg.1418 CDS CP008984.1 1389341 1390291 2 + 951 Tagatose 1,6-bisphosphate aldolase (EC 4.1.2.40) - none -
fig|6666666.229936.peg.1419 CDS CP008984.1 1390309 1391601 1 + 1293 Tagatose-6-phosphate kinase GatZ (EC 2.7.1.144) D-Tagatose and Galactitol Utilization
fig|6666666.229936.peg.1420 CDS CP008984.1 1391579 1392028 2 + 450 PTS system, galactitol-specific IIA component (EC 2.7.1.69) D-Tagatose and Galactitol Utilization
fig|6666666.229936.peg.1421 CDS CP008984.1 1392047 1392331 2 + 285 PTS system, galactitol-specific IIB component (EC 2.7.1.69) D-Tagatose and Galactitol Utilization
fig|6666666.229936.peg.1422 CDS CP008984.1 1392337 1393701 1 + 1365 PTS system, galactitol-specific IIC component (EC 2.7.1.69) D-Tagatose and Galactitol Utilization
fig|6666666.229936.peg.1423 CDS CP008984.1 1393724 1394767 2 + 1044 Galactitol-1-phosphate 5-dehydrogenase (EC 1.1.1.251) D-Tagatose and Galactitol Utilization
fig|6666666.229936.peg.1424 CDS CP008984.1 1394835 1395593 3 + 759 Galactitol utilization operon repressor D-Tagatose and Galactitol Utilization
fig|6666666.229936.peg.1425 CDS CP008984.1 1397563 1395713 -1 - 1851 1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis;
Pyridoxin (Vitamin B6) Biosynthesis;
Thiamin biosynthesis
fig|6666666.229936.peg.1426 CDS CP008984.1 1398538 1397648 -1 - 891 Octaprenyl diphosphate synthase (EC 2.5.1.90) / Dimethylallyltransferase (EC 2.5.1.1) / (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10) / Geranylgeranyl diphosphate synthase (EC 2.5.1.29) Isoprenoid Biosynthesis;
Isoprenoid Biosynthesis;
Isoprenoid Biosynthesis: Interconversions;
Isoprenoinds for Quinones;
Isoprenoinds for Quinones;
Isoprenoinds for Quinones;
Isoprenoinds for Quinones;
Polyprenyl Diphosphate Biosynthesis;
Polyprenyl Diphosphate Biosynthesis;
Polyprenyl Diphosphate Biosynthesis
fig|6666666.229936.peg.1427 CDS CP008984.1 1398794 1398549 -2 - 246 Exodeoxyribonuclease VII small subunit (EC 3.1.11.6) DNA repair, bacterial;
Purine salvage cluster
fig|6666666.229936.peg.1428 CDS CP008984.1 1399019 1399915 2 + 897 Acetyl-coenzyme A carboxyl transferase beta chain (EC 6.4.1.2) Fatty Acid Biosynthesis FASII
fig|6666666.229936.peg.1429 CDS CP008984.1 1399938 1401284 3 + 1347 Dihydrofolate synthase (EC 6.3.2.12) @ Folylpolyglutamate synthase (EC 6.3.2.17) Folate Biosynthesis;
Folate Biosynthesis
fig|6666666.229936.peg.1430 CDS CP008984.1 1401982 1401341 -1 - 642 Hypothetical, related to broad specificity phosphatases COG0406 CBSS-196164.1.peg.461
fig|6666666.229936.peg.1431 CDS CP008984.1 1403501 1402044 -2 - 1458 Cardiolipin synthetase (EC 2.7.8.-) Cardiolipin synthesis;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229936.peg.1432 CDS CP008984.1 1404423 1403515 -3 - 909 Putative surface protein - none -
fig|6666666.229936.peg.1433 CDS CP008984.1 1404542 1405231 2 + 690 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses;
Ribosome biogenesis bacterial;
tRNA modification Bacteria
fig|6666666.229936.peg.1434 CDS CP008984.1 1405276 1406139 1 + 864 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229936.peg.1435 CDS CP008984.1 1406222 1406545 2 + 324 Alkylphosphonate utilization operon protein PhnA - none -
fig|6666666.229936.peg.1436 CDS CP008984.1 1407141 1406596 -3 - 546 hypothetical protein - none -
fig|6666666.229936.peg.1437 CDS CP008984.1 1408850 1409119 2 + 270 hypothetical protein - none -
fig|6666666.229936.peg.1438 CDS CP008984.1 1409747 1409995 2 + 249 Esterase/lipase - none -
fig|6666666.229936.peg.1439 CDS CP008984.1 1409992 1411110 1 + 1119 Esterase/lipase - none -
fig|6666666.229936.peg.1440 CDS CP008984.1 1412756 1411383 -2 - 1374 RND efflux system, outer membrane lipoprotein CmeC Multidrug Resistance Efflux Pumps
fig|6666666.229936.peg.1441 CDS CP008984.1 1414767 1412833 -3 - 1935 Macrolide export ATP-binding/permease protein MacB (EC 3.6.3.-) Multidrug Resistance Efflux Pumps
fig|6666666.229936.peg.1442 CDS CP008984.1 1415971 1414787 -1 - 1185 Macrolide-specific efflux protein MacA Multidrug Resistance Efflux Pumps
fig|6666666.229936.peg.1443 CDS CP008984.1 1416172 1417863 1 + 1692 Glutaminyl-tRNA synthetase (EC 6.1.1.18) tRNA aminoacylation, Glu and Gln
fig|6666666.229936.peg.1444 CDS CP008984.1 1417897 1418346 1 + 450 YcgN (Fragment) CBSS-243277.1.peg.4359
fig|6666666.229936.peg.1445 CDS CP008984.1 1418471 1419031 2 + 561 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) Glycogen metabolism;
Glycogen metabolism cluster;
Maltose and Maltodextrin Utilization;
Maltose utilization cluster
fig|6666666.229936.peg.1446 CDS CP008984.1 1419028 1421223 1 + 2196 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) Glycogen metabolism;
Glycogen metabolism cluster
fig|6666666.229936.peg.1447 CDS CP008984.1 1421220 1423229 3 + 2010 Glycogen debranching enzyme (EC 3.2.1.-) Glycogen metabolism;
Glycogen metabolism cluster
fig|6666666.229936.peg.1448 CDS CP008984.1 1423256 1424566 2 + 1311 Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27) Glycogen metabolism;
Glycogen metabolism cluster
fig|6666666.229936.peg.1449 CDS CP008984.1 1424768 1426207 2 + 1440 Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21) Glycogen metabolism;
Glycogen metabolism cluster
fig|6666666.229936.peg.1450 CDS CP008984.1 1426331 1428796 2 + 2466 Glycogen phosphorylase (EC 2.4.1.1) Glycogen metabolism;
Glycogen metabolism cluster;
Maltose and Maltodextrin Utilization
fig|6666666.229936.peg.1451 CDS CP008984.1 1428961 1428821 -1 - 141 hypothetical protein - none -
fig|6666666.229936.peg.1452 CDS CP008984.1 1429520 1428915 -2 - 606 DedA protein DedA family of inner membrane proteins;
Uptake of selenate and selenite
fig|6666666.229936.peg.1453 CDS CP008984.1 1429734 1430021 3 + 288 LSU ribosomal protein L25p Transcription repair cluster
fig|6666666.229936.peg.1454 CDS CP008984.1 1430169 1430777 3 + 609 lipoprotein HlpB - none -
fig|6666666.229936.peg.1455 CDS CP008984.1 1430925 1431806 3 + 882 Murein-DD-endopeptidase (EC 3.4.99.-) Peptidoglycan Biosynthesis
fig|6666666.229936.peg.1456 CDS CP008984.1 1431984 1433312 3 + 1329 Chromosome partition protein MukF DNA structural proteins, bacterial;
MukBEF Chromosome Condensation
fig|6666666.229936.peg.1457 CDS CP008984.1 1433340 1433477 3 + 138 hypothetical protein - none -
fig|6666666.229936.peg.1458 CDS CP008984.1 1433492 1436953 2 + 3462 Putative 2-acylglycerophosphoethanolamine acyltransferase / acyl-acyl carrier protein synthetase (EC 6.2.1.20) - none -
fig|6666666.229936.peg.1459 CDS CP008984.1 1436974 1437714 1 + 741 Chromosome partition protein MukE DNA structural proteins, bacterial;
MukBEF Chromosome Condensation
fig|6666666.229936.peg.1460 CDS CP008984.1 1437714 1442204 3 + 4491 Chromosome partition protein MukB DNA structural proteins, bacterial;
MukBEF Chromosome Condensation
fig|6666666.229936.peg.1461 CDS CP008984.1 1442280 1443134 3 + 855 Integral membrane protein - none -
fig|6666666.229936.peg.1462 CDS CP008984.1 1443163 1444590 1 + 1428 Exodeoxyribonuclease I (EC 3.1.11.1) DNA Repair Base Excision
fig|6666666.229936.peg.1463 CDS CP008984.1 1444639 1444770 1 + 132 hypothetical protein - none -
fig|6666666.229936.peg.1464 CDS CP008984.1 1444838 1445011 2 + 174 hypothetical protein - none -
fig|6666666.229936.peg.1465 CDS CP008984.1 1445185 1445310 1 + 126 Mobile element protein - none -
fig|6666666.229936.peg.1466 CDS CP008984.1 1445304 1445813 3 + 510 Mobile element protein - none -
fig|6666666.229936.peg.1467 CDS CP008984.1 1446478 1446600 1 + 123 hypothetical protein - none -
fig|6666666.229936.peg.1468 CDS CP008984.1 1447278 1447763 3 + 486 Ferritin-like protein 2 - none -
fig|6666666.229936.peg.1469 CDS CP008984.1 1447779 1448276 3 + 498 Ferritin-like protein 2 - none -
fig|6666666.229936.peg.1470 CDS CP008984.1 1448507 1448310 -2 - 198 hypothetical protein - none -
fig|6666666.229936.peg.1471 CDS CP008984.1 1448616 1449389 3 + 774 Fumarate and nitrate reduction regulatory protein Oxidative stress
fig|6666666.229936.peg.1472 CDS CP008984.1 1449508 1450440 1 + 933 Universal stress protein E Universal stress protein family
fig|6666666.229936.peg.1473 CDS CP008984.1 1450567 1451403 1 + 837 ABC-type Co2+ transport system, periplasmic component - none -
fig|6666666.229936.peg.1474 CDS CP008984.1 1454094 1451488 -3 - 2607 DNA topoisomerase I (EC 5.99.1.2) CBSS-272943.3.peg.1367;
Conserved gene cluster associated with Met-tRNA formyltransferase;
DNA topoisomerases, Type I, ATP-independent
fig|6666666.229936.peg.1475 CDS CP008984.1 1455168 1454332 -3 - 837 COG0613, Predicted metal-dependent phosphoesterases (PHP family) YrdC-YciO-Sua5 protein family;
tRNA modification Bacteria
fig|6666666.229936.peg.1476 CDS CP008984.1 1456201 1455182 -1 - 1020 Dihydroorotate dehydrogenase (EC 1.3.3.1) De Novo Pyrimidine Synthesis
fig|6666666.229936.peg.1477 CDS CP008984.1 1458883 1456274 -1 - 2610 Membrane alanine aminopeptidase N (EC 3.4.11.2) Aminopeptidases (EC 3.4.11.-)
fig|6666666.229936.peg.1478 CDS CP008984.1 1459305 1460495 3 + 1191 Aspartate aminotransferase (EC 2.6.1.1) CBSS-216591.1.peg.168;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229936.peg.1479 CDS CP008984.1 1461109 1460546 -1 - 564 Transcriptional regulator, TetR family - none -
fig|6666666.229936.peg.1480 CDS CP008984.1 1461257 1462237 2 + 981 HlyD family secretion protein - none -
fig|6666666.229936.peg.1481 CDS CP008984.1 1462240 1464984 1 + 2745 ABC-type multidrug transport system, permease component - none -
fig|6666666.229936.peg.1482 CDS CP008984.1 1464986 1466113 2 + 1128 ABC-type multidrug transport system, permease component - none -
fig|6666666.229936.peg.1483 CDS CP008984.1 1466133 1467551 3 + 1419 Outer membrane component of tripartite multidrug resistance system Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria
fig|6666666.229936.peg.1484 CDS CP008984.1 1467529 1467660 1 + 132 hypothetical protein - none -
fig|6666666.229936.peg.1485 CDS CP008984.1 1467679 1468698 1 + 1020 Vitamin B12 ABC transporter, permease component BtuC - none -
fig|6666666.229936.peg.1486 CDS CP008984.1 1468698 1469492 3 + 795 Glutathione synthetase (EC 6.3.2.3) Cluster containing Glutathione synthetase;
Glutathione: Biosynthesis and gamma-glutamyl cycle;
Heat shock dnaK gene cluster extended
fig|6666666.229936.peg.1487 CDS CP008984.1 1470654 1470007 -3 - 648 Repressor protein CI - none -
fig|6666666.229936.peg.1488 CDS CP008984.1 1471778 1470945 -2 - 834 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins Ton and Tol transport systems
fig|6666666.229936.peg.1489 CDS CP008984.1 1472622 1471873 -3 - 750 ABC transporter ATP-binding protein - none -
fig|6666666.229936.peg.1490 CDS CP008984.1 1473632 1472619 -2 - 1014 Vitamin B12 ABC transporter, permease component BtuC - none -
fig|6666666.229936.peg.1491 CDS CP008984.1 1474633 1473632 -1 - 1002 ABC transporter, solute-binding protein - none -
fig|6666666.229936.peg.1492 CDS CP008984.1 1474844 1475341 2 + 498 FIG00697418: hypothetical protein - none -
fig|6666666.229936.peg.1493 CDS CP008984.1 1475343 1477355 3 + 2013 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins Ton and Tol transport systems
fig|6666666.229936.peg.1494 CDS CP008984.1 1477861 1477445 -1 - 417 putative membrane protein - none -
fig|6666666.229936.peg.1495 CDS CP008984.1 1478002 1478967 1 + 966 tRNA(Cytosine32)-2-thiocytidine synthetase CBSS-326442.4.peg.1852;
tRNA modification Archaea;
tRNA modification Bacteria
fig|6666666.229936.peg.1496 CDS CP008984.1 1479430 1479062 -1 - 369 Probable lipoprotein nlpC precursor - none -
fig|6666666.229936.peg.1497 CDS CP008984.1 1479898 1479602 -1 - 297 Integration host factor alpha subunit DNA structural proteins, bacterial
fig|6666666.229936.peg.1498 CDS CP008984.1 1482292 1479902 -1 - 2391 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) tRNA aminoacylation, Phe
fig|6666666.229936.peg.1499 CDS CP008984.1 1483301 1482312 -2 - 990 Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20) tRNA aminoacylation, Phe
fig|6666666.229936.peg.1500 CDS CP008984.1 1484516 1483641 -2 - 876 Probable protease htpX homolog - none -
fig|6666666.229936.peg.1501 CDS CP008984.1 1485199 1486134 1 + 936 Arabinose 5-phosphate isomerase (EC 5.3.1.13) KDO2-Lipid A biosynthesis
fig|6666666.229936.peg.1502 CDS CP008984.1 1486134 1486688 3 + 555 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC 3.1.3.45) KDO2-Lipid A biosynthesis
fig|6666666.229936.peg.1503 CDS CP008984.1 1486856 1488403 2 + 1548 Anthranilate synthase, aminase component (EC 4.1.3.27) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229936.peg.1504 CDS CP008984.1 1488414 1489004 3 + 591 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229936.peg.1505 CDS CP008984.1 1489078 1489470 1 + 393 putative - none -
fig|6666666.229936.peg.1506 CDS CP008984.1 1489482 1490483 3 + 1002 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) Auxin biosynthesis;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229936.peg.1507 CDS CP008984.1 1490578 1490856 1 + 279 HigB toxin protein Toxin-antitoxin replicon stabilization systems
fig|6666666.229936.peg.1508 CDS CP008984.1 1490866 1491144 1 + 279 HigA protein (antitoxin to HigB) Toxin-antitoxin replicon stabilization systems
fig|6666666.229936.peg.1509 CDS CP008984.1 1491153 1492583 3 + 1431 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24) Auxin biosynthesis;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis;
Tryptophan synthesis
fig|6666666.229936.peg.1510 CDS CP008984.1 1492722 1492889 3 + 168 hypothetical protein - none -
fig|6666666.229936.peg.1511 CDS CP008984.1 1493038 1493319 1 + 282 [NiFe] hydrogenase metallocenter assembly protein HybG G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229936.peg.1512 CDS CP008984.1 1494339 1494605 3 + 267 Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3) Na+ translocating decarboxylases and related biotin-dependent enzymes;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229936.peg.1513 CDS CP008984.1 1494621 1496417 3 + 1797 Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3) Na+ translocating decarboxylases and related biotin-dependent enzymes;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229936.peg.1514 CDS CP008984.1 1496428 1497732 1 + 1305 Oxaloacetate decarboxylase beta chain (EC 4.1.1.3) Na+ translocating decarboxylases and related biotin-dependent enzymes;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229936.peg.1515 CDS CP008984.1 1500577 1498136 -1 - 2442 Outer membrane receptor for lactoferrin or transferrin, TonB-dependent protein A - none -
fig|6666666.229936.peg.1516 CDS CP008984.1 1501295 1501083 -2 - 213 hypothetical protein - none -
fig|6666666.229936.peg.1517 CDS CP008984.1 1501322 1502020 2 + 699 3-hydroxypropionate dehydrogenase (EC 1.1.1.298) - none -
fig|6666666.229936.peg.1518 CDS CP008984.1 1502030 1503223 2 + 1194 Tryptophan synthase beta chain (EC 4.2.1.20) Auxin biosynthesis;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229936.peg.1519 CDS CP008984.1 1503226 1504032 1 + 807 Tryptophan synthase alpha chain (EC 4.2.1.20) Auxin biosynthesis;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.229936.peg.1520 CDS CP008984.1 1504307 1505992 2 + 1686 Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) Ribonucleotide reduction
fig|6666666.229936.peg.1521 CDS CP008984.1 1506125 1507114 2 + 990 Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) Ribonucleotide reduction
fig|6666666.229936.peg.1522 CDS CP008984.1 1507400 1508806 2 + 1407 Pyruvate kinase (EC 2.7.1.40) Entner-Doudoroff Pathway;
Glycerate metabolism;
Glycolysis and Gluconeogenesis;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229936.peg.1523 CDS CP008984.1 1509212 1508910 -2 - 303 Autoinducer 2 (AI-2) modifying protein LsrG Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229936.peg.1524 CDS CP008984.1 1510123 1509245 -1 - 879 Autoinducer 2 (AI-2) aldolase LsrF (EC 4.2.1.-) Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229936.peg.1525 CDS CP008984.1 1511244 1510147 -3 - 1098 Autoinducer 2 (AI-2) ABC transport system, periplasmic AI-2 binding protein LsrB Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229936.peg.1526 CDS CP008984.1 1512273 1511269 -3 - 1005 Autoinducer 2 (AI-2) ABC transport system, membrane channel protein LsrD Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229936.peg.1527 CDS CP008984.1 1513318 1512287 -1 - 1032 Autoinducer 2 (AI-2) ABC transport system, membrane channel protein LsrC Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229936.peg.1528 CDS CP008984.1 1514629 1513328 -1 - 1302 Autoinducer 2 (AI-2) ABC transport system, fused AI2 transporter subunits and ATP-binding component Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229936.peg.1529 CDS CP008984.1 1514843 1514616 -2 - 228 Autoinducer 2 (AI-2) ABC transport system, fused AI2 transporter subunits and ATP-binding component Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229936.peg.1530 CDS CP008984.1 1515087 1516052 3 + 966 LsrR, transcriptional repressor of lsr operon Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229936.peg.1531 CDS CP008984.1 1516102 1517676 1 + 1575 Autoinducer 2 (AI-2) kinase LsrK (EC 2.7.1.-) Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
fig|6666666.229936.peg.1532 CDS CP008984.1 1518493 1517765 -1 - 729 Dethiobiotin synthetase (EC 6.3.3.3) Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin synthesis cluster
fig|6666666.229936.peg.1533 CDS CP008984.1 1519799 1518570 -2 - 1230 Mlc, transcriptional repressor of MalT (the transcriptional activator of maltose regulon) and manXYZ operon Maltose and Maltodextrin Utilization
fig|6666666.229936.peg.1534 CDS CP008984.1 1519995 1521398 3 + 1404 Asparaginyl-tRNA synthetase (EC 6.1.1.22) tRNA aminoacylation, Asp and Asn;
tRNA modification Archaea
fig|6666666.229936.peg.1535 CDS CP008984.1 1522022 1521561 -2 - 462 Stringent starvation protein B Carbon Starvation
fig|6666666.229936.peg.1536 CDS CP008984.1 1522675 1522034 -1 - 642 Stringent starvation protein A Carbon Starvation
fig|6666666.229936.peg.1537 CDS CP008984.1 1523330 1522875 -2 - 456 Molybdenum cofactor biosynthesis protein MoaE Molybdenum cofactor biosynthesis;
ar-104-EC Molybdenum cofactor biosynthesis moaABCDE
fig|6666666.229936.peg.1538 CDS CP008984.1 1523579 1523331 -2 - 249 Molybdenum cofactor biosynthesis protein MoaD Molybdenum cofactor biosynthesis;
ar-104-EC Molybdenum cofactor biosynthesis moaABCDE
fig|6666666.229936.peg.1539 CDS CP008984.1 1524100 1523579 -1 - 522 Molybdenum cofactor biosynthesis protein MoaC Molybdenum cofactor biosynthesis;
ar-104-EC Molybdenum cofactor biosynthesis moaABCDE
fig|6666666.229936.peg.1540 CDS CP008984.1 1525126 1524113 -1 - 1014 Molybdenum cofactor biosynthesis protein MoaA Molybdenum cofactor biosynthesis;
ar-104-EC Molybdenum cofactor biosynthesis moaABCDE
fig|6666666.229936.peg.1541 CDS CP008984.1 1525484 1526452 2 + 969 FIG002813: LPPG:FO 2-phospho-L-lactate transferase like, CofD-like - none -
fig|6666666.229936.peg.1542 CDS CP008984.1 1527191 1526517 -2 - 675 Putative DNA-binding protein in cluster with Type I restriction-modification system Restriction-Modification System
fig|6666666.229936.peg.1543 CDS CP008984.1 1527691 1528395 1 + 705 Alpha-aspartyl dipeptidase Peptidase E (EC 3.4.13.21) Dipeptidases (EC 3.4.13.-)
fig|6666666.229936.peg.1544 CDS CP008984.1 1529936 1528479 -2 - 1458 tRNA S(4)U 4-thiouridine synthase (former ThiI) / Rhodanese-like domain required for thiamine synthesis Thiamin biosynthesis;
Thiamin biosynthesis;
tRNA modification Archaea;
tRNA modification Archaea;
tRNA modification Bacteria;
tRNA modification Bacteria
fig|6666666.229936.peg.1545 CDS CP008984.1 1530242 1531342 2 + 1101 Cytochrome c-type protein TorY - none -
fig|6666666.229936.peg.1546 CDS CP008984.1 1531403 1533883 2 + 2481 Trimethylamine-N-oxide reductase (EC 1.6.6.9) - none -
fig|6666666.229936.peg.1547 CDS CP008984.1 1534733 1533954 -2 - 780 Protein of unknown function DUF419 - none -
fig|6666666.229936.peg.1548 CDS CP008984.1 1534963 1536420 1 + 1458 2-oxoglutarate/malate translocator - none -
fig|6666666.229936.peg.1549 CDS CP008984.1 1536635 1536889 2 + 255 RelB/StbD replicon stabilization protein (antitoxin to RelE/StbE) Toxin-antitoxin replicon stabilization systems
fig|6666666.229936.peg.1550 CDS CP008984.1 1536886 1537038 1 + 153 StbE replicon stabilization toxin - none -
fig|6666666.229936.peg.1551 CDS CP008984.1 1537022 1537168 2 + 147 RelE/StbE replicon stabilization toxin Toxin-antitoxin replicon stabilization systems
fig|6666666.229936.peg.1552 CDS CP008984.1 1537966 1537181 -1 - 786 tRNA pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses;
tRNA modification Archaea;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229936.peg.1553 CDS CP008984.1 1538518 1538126 -1 - 393 SSU ribosomal protein S9p (S16e) - none -
fig|6666666.229936.peg.1554 CDS CP008984.1 1538963 1538535 -2 - 429 LSU ribosomal protein L13p (L13Ae) - none -
fig|6666666.229936.peg.1555 CDS CP008984.1 1539801 1539205 -3 - 597 hypothetical protein - none -
fig|6666666.229936.peg.1556 CDS CP008984.1 1541793 1539814 -3 - 1980 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) DNA repair, bacterial RecBCD pathway
fig|6666666.229936.peg.1557 CDS CP008984.1 1545458 1541793 -2 - 3666 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) DNA repair, bacterial RecBCD pathway
fig|6666666.229936.peg.1558 CDS CP008984.1 1545885 1545529 -3 - 357 DsrE-related protein - none -
fig|6666666.229936.peg.1559 CDS CP008984.1 1546840 1546310 -1 - 531 3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabA form (EC 4.2.1.59) Fatty Acid Biosynthesis FASII
fig|6666666.229936.peg.1560 CDS CP008984.1 1548767 1546983 -2 - 1785 ATP-dependent protease La (EC 3.4.21.53) Type II Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229936.peg.1561 CDS CP008984.1 1548914 1549360 2 + 447 Macrodomain Ter protein YcbG - none -
fig|6666666.229936.peg.1562 CDS CP008984.1 1549635 1549426 -3 - 210 Cold shock protein CspD Cold shock, CspA family of proteins
fig|6666666.229936.peg.1563 CDS CP008984.1 1549990 1549826 -1 - 165 hypothetical protein - none -
fig|6666666.229936.peg.1564 CDS CP008984.1 1550757 1550044 -3 - 714 tRNA pseudouridine synthase C (EC 4.2.1.70) RNA pseudouridine syntheses;
tRNA modification Bacteria
fig|6666666.229936.peg.1565 CDS CP008984.1 1551095 1550754 -2 - 342 Hypothetical protein YqcC (clustered with tRNA pseudouridine synthase C) - none -
fig|6666666.229936.peg.1566 CDS CP008984.1 1551175 1551957 1 + 783 Zn-ribbon-containing, possibly nucleic-acid-binding protein - none -
fig|6666666.229936.peg.1567 CDS CP008984.1 1551966 1552805 3 + 840 NADPH dependent preQ0 reductase (EC 1.7.1.13) - none -
fig|6666666.229936.peg.1568 CDS CP008984.1 1553434 1552853 -1 - 582 Phosphoglycerate transport system transcriptional regulatory protein PgtA Phosphoglycerate transport system
fig|6666666.229936.peg.1569 CDS CP008984.1 1553888 1553469 -2 - 420 Phosphoglycerate transport system transcriptional regulatory protein PgtA Phosphoglycerate transport system
fig|6666666.229936.peg.1570 CDS CP008984.1 1554097 1553894 -1 - 204 Phosphoglycerate transport system transcriptional regulatory protein PgtA Phosphoglycerate transport system
fig|6666666.229936.peg.1571 CDS CP008984.1 1556072 1554090 -2 - 1983 Phosphoglycerate transport system sensor protein PgtB (EC 2.7.3.-) Phosphoglycerate transport system
fig|6666666.229936.peg.1572 CDS CP008984.1 1557055 1556069 -1 - 987 Phosphoglycerate transport regulatory protein PgtC Phosphoglycerate transport system
fig|6666666.229936.peg.1573 CDS CP008984.1 1557682 1558563 1 + 882 Ferric iron ABC transporter, ATP-binding protein Iron acquisition in Streptococcus
fig|6666666.229936.peg.1574 CDS CP008984.1 1559227 1558691 -1 - 537 Putative transporting ATPase - none -
fig|6666666.229936.peg.1575 CDS CP008984.1 1561276 1559324 -1 - 1953 Cell division protein FtsH (EC 3.4.24.-) Bacterial Cell Division;
Cell division-ribosomal stress proteins cluster;
Folate biosynthesis cluster
fig|6666666.229936.peg.1576 CDS CP008984.1 1562012 1561383 -2 - 630 Cell division protein FtsJ / Ribosomal RNA large subunit methyltransferase E (EC 2.1.1.-) ## LSU rRNA Um2552 Bacterial Cell Division;
RNA methylation
fig|6666666.229936.peg.1577 CDS CP008984.1 1562971 1562147 -1 - 825 Formyltetrahydrofolate deformylase (EC 3.5.1.10) 5-FCL-like protein;
One-carbon metabolism by tetrahydropterines
fig|6666666.229936.peg.1578 CDS CP008984.1 1563406 1563008 -1 - 399 DNA-binding protein H-NS - none -
fig|6666666.229936.peg.1579 CDS CP008984.1 1563847 1565379 1 + 1533 Na+/H+ antiporter - none -
fig|6666666.229936.peg.1580 CDS CP008984.1 1572261 1571434 -3 - 828 Glutamate racemase (EC 5.1.1.3) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Peptidoglycan Biosynthesis
fig|6666666.229936.peg.1581 CDS CP008984.1 1572789 1572292 -3 - 498 Chorismate--pyruvate lyase (EC 4.1.3.40) Ubiquinone Biosynthesis
fig|6666666.229936.peg.1582 CDS CP008984.1 1574863 1572782 -1 - 2082 ATP-dependent DNA helicase RecG (EC 3.6.1.-) - none -
fig|6666666.229936.peg.1583 CDS CP008984.1 1576987 1574864 -1 - 2124 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II / Guanosine-3@1,5@1-bis(diphosphate) 3@1-pyrophosphohydrolase (EC 3.1.7.2) CBSS-176299.4.peg.1292;
CBSS-176299.4.peg.1292;
Stringent Response, (p)ppGpp metabolism;
Stringent Response, (p)ppGpp metabolism
fig|6666666.229936.peg.1584 CDS CP008984.1 1577299 1577033 -1 - 267 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) CBSS-176299.4.peg.1292;
RNA polymerase bacterial
fig|6666666.229936.peg.1585 CDS CP008984.1 1577995 1577357 -1 - 639 Guanylate kinase (EC 2.7.4.8) CBSS-323097.3.peg.2594;
Purine conversions
fig|6666666.229936.peg.1586 CDS CP008984.1 1578008 1578157 2 + 150 hypothetical protein - none -
fig|6666666.229936.peg.1587 CDS CP008984.1 1578237 1579241 3 + 1005 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis;
Pyridoxin (Vitamin B6) Biosynthesis
fig|6666666.229936.peg.1588 CDS CP008984.1 1579751 1579335 -2 - 417 conserved hypothetical protein; possible membrane protein - none -
fig|6666666.229936.peg.1589 CDS CP008984.1 1579764 1580252 3 + 489 Putative oligoketide cyclase/lipid transport protein, similarity with yeast ubiquinone-binding protein YOL008W - none -
fig|6666666.229936.peg.1590 CDS CP008984.1 1580245 1580538 1 + 294 UPF0125 protein yfjF - none -
fig|6666666.229936.peg.1591 CDS CP008984.1 1580571 1581764 3 + 1194 FIG074102: hypothetical protein - none -
fig|6666666.229936.peg.1592 CDS CP008984.1 1581771 1583105 3 + 1335 Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) DNA repair, bacterial;
Purine salvage cluster
fig|6666666.229936.peg.1593 CDS CP008984.1 1583965 1583111 -1 - 855 FIG000506: Predicted P-loop-containing kinase - none -
fig|6666666.229936.peg.1594 CDS CP008984.1 1584514 1583993 -1 - 522 PTS IIA-like nitrogen-regulatory protein PtsN - none -
fig|6666666.229936.peg.1595 CDS CP008984.1 1585243 1584518 -1 - 726 Lipopolysaccharide ABC transporter, ATP-binding protein LptB KDO2-Lipid A biosynthesis;
Lipopolysaccharide assembly
fig|6666666.229936.peg.1596 CDS CP008984.1 1585767 1585249 -3 - 519 LptA, protein essential for LPS transport across the periplasm KDO2-Lipid A biosynthesis;
Lipopolysaccharide assembly
fig|6666666.229936.peg.1597 CDS CP008984.1 1586323 1585748 -1 - 576 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters Lipopolysaccharide assembly
fig|6666666.229936.peg.1598 CDS CP008984.1 1586607 1587404 3 + 798 Uncharacterized ABC transporter, ATP-binding protein YrbF CBSS-12149.1.peg.3301;
Lipopolysaccharide assembly
fig|6666666.229936.peg.1599 CDS CP008984.1 1587398 1588183 2 + 786 Uncharacterized ABC transporter, permease component YrbE CBSS-12149.1.peg.3301;
Lipopolysaccharide assembly
fig|6666666.229936.peg.1600 CDS CP008984.1 1588206 1588715 3 + 510 Uncharacterized ABC transporter, periplasmic component YrbD CBSS-12149.1.peg.3301;
Lipopolysaccharide assembly
fig|6666666.229936.peg.1601 CDS CP008984.1 1588744 1589385 1 + 642 Uncharacterized ABC transporter, auxiliary component YrbC CBSS-12149.1.peg.3301;
Lipopolysaccharide assembly
fig|6666666.229936.peg.1602 CDS CP008984.1 1589479 1589748 1 + 270 Uncharacterized protein YrbB CBSS-12149.1.peg.3301
fig|6666666.229936.peg.1603 CDS CP008984.1 1589748 1590005 3 + 258 YrbA protein Broadly distributed proteins not in subsystems;
CBSS-12149.1.peg.3301
fig|6666666.229936.peg.1604 CDS CP008984.1 1590022 1591293 1 + 1272 UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7) CBSS-12149.1.peg.3301;
Peptidoglycan Biosynthesis;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.229936.peg.1605 CDS CP008984.1 1592044 1592991 1 + 948 Putative secretion ATPase - none -
fig|6666666.229936.peg.1606 CDS CP008984.1 1594402 1593377 -1 - 1026 glycosyl transferase, group 2 family protein - none -
fig|6666666.229936.peg.1607 CDS CP008984.1 1595194 1594904 -1 - 291 FIG00696346: hypothetical protein - none -
fig|6666666.229936.peg.1608 CDS CP008984.1 1595397 1596827 3 + 1431 Long-chain fatty acid transport protein - none -
fig|6666666.229936.peg.1609 CDS CP008984.1 1596904 1597443 1 + 540 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) DNA repair, bacterial
fig|6666666.229936.peg.1610 CDS CP008984.1 1597440 1598108 3 + 669 DNA mismatch repair endonuclease MutH DNA repair, bacterial
fig|6666666.229936.peg.1611 CDS CP008984.1 1598173 1598898 1 + 726 Integral membrane protein TerC - none -
fig|6666666.229936.peg.1612 CDS CP008984.1 1598991 1599122 3 + 132 hypothetical protein - none -
fig|6666666.229936.peg.1613 CDS CP008984.1 1599190 1599354 1 + 165 hypothetical protein - none -
fig|6666666.229936.peg.1614 CDS CP008984.1 1599536 1599661 2 + 126 Mobile element protein - none -
fig|6666666.229936.peg.1615 CDS CP008984.1 1599655 1600164 1 + 510 Mobile element protein - none -
fig|6666666.229936.peg.1616 CDS CP008984.1 1601669 1600260 -2 - 1410 Glutamine synthetase type I (EC 6.3.1.2) Ammonia assimilation;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Glutamine synthetases;
Peptidoglycan Biosynthesis
fig|6666666.229936.peg.1617 CDS CP008984.1 1602056 1603909 2 + 1854 GTP-binding protein TypA/BipA Universal GTPases
fig|6666666.229936.peg.1618 CDS CP008984.1 1604135 1606795 2 + 2661 TolA protein Ton and Tol transport systems
fig|6666666.229936.peg.1619 CDS CP008984.1 1607323 1606859 -1 - 465 Thiol peroxidase, Bcp-type (EC 1.11.1.15) CBSS-316057.3.peg.3521;
Thioredoxin-disulfide reductase
fig|6666666.229936.peg.1620 CDS CP008984.1 1607481 1608374 3 + 894 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229936.peg.1621 CDS CP008984.1 1608488 1609192 2 + 705 Outer membrane protein NlpB, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and YfgL); Lipoprotein-34 precursor Lipopolysaccharide assembly
fig|6666666.229936.peg.1622 CDS CP008984.1 1609323 1609481 3 + 159 Outer membrane protein NlpB, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and YfgL); Lipoprotein-34 precursor Lipopolysaccharide assembly
fig|6666666.229936.peg.1623 CDS CP008984.1 1609616 1611127 2 + 1512 L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1) / Osmotic adaptation Choline and Betaine Uptake and Betaine Biosynthesis
fig|6666666.229936.peg.1624 CDS CP008984.1 1611442 1612278 1 + 837 L-proline glycine betaine ABC transport system permease protein ProV (TC 3.A.1.12.1) Choline and Betaine Uptake and Betaine Biosynthesis
fig|6666666.229936.peg.1625 CDS CP008984.1 1613018 1612323 -2 - 696 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC A Hypothetical Protein Related to Proline Metabolism;
CBSS-630.2.peg.3360
fig|6666666.229936.peg.1626 CDS CP008984.1 1614399 1613011 -3 - 1389 Nicotinamide phosphoribosyltransferase (EC 2.4.2.12) NAD and NADP cofactor biosynthesis global
fig|6666666.229936.peg.1627 CDS CP008984.1 1614538 1614669 1 + 132 hypothetical protein - none -
fig|6666666.229936.peg.1628 CDS CP008984.1 1614758 1617205 2 + 2448 Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) CBSS-216591.1.peg.168;
Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch;
Methionine Biosynthesis;
Threonine and Homoserine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229936.peg.1629 CDS CP008984.1 1617218 1618162 2 + 945 Homoserine kinase (EC 2.7.1.39) CBSS-269482.1.peg.1294;
Methionine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229936.peg.1630 CDS CP008984.1 1618190 1618630 2 + 441 hypothetical protein - none -
fig|6666666.229936.peg.1631 CDS CP008984.1 1618686 1619960 3 + 1275 Threonine synthase (EC 4.2.3.1) Threonine and Homoserine Biosynthesis
fig|6666666.229936.peg.1632 CDS CP008984.1 1619995 1620738 1 + 744 4@1-phosphopantetheinyl transferase (EC 2.7.8.-) Fatty Acid Biosynthesis FASII
fig|6666666.229936.peg.1633 CDS CP008984.1 1620834 1622087 3 + 1254 HflK protein Hfl operon;
Scaffold proteins for [4Fe-4S] cluster assembly (MRP family)
fig|6666666.229936.peg.1634 CDS CP008984.1 1622087 1622974 2 + 888 HflC protein Hfl operon;
Scaffold proteins for [4Fe-4S] cluster assembly (MRP family)
fig|6666666.229936.peg.1635 CDS CP008984.1 1623262 1623107 -1 - 156 hypothetical protein - none -
fig|6666666.229936.peg.1636 CDS CP008984.1 1623264 1623593 3 + 330 DNA uptake protein and related DNA-binding proteins - none -
fig|6666666.229936.peg.1637 CDS CP008984.1 1623619 1624299 1 + 681 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) Heat shock dnaK gene cluster extended;
Housecleaning nucleoside triphosphate pyrophosphatases
fig|6666666.229936.peg.1638 CDS CP008984.1 1624338 1624661 3 + 324 PlcB, ORFX, ORFP, ORFB, ORFA, ldh gene - none -
fig|6666666.229936.peg.1639 CDS CP008984.1 1624661 1625830 2 + 1170 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB CBSS-630.2.peg.3360;
Heat shock dnaK gene cluster extended;
Heme and Siroheme Biosynthesis;
Queuosine-Archaeosine Biosynthesis
fig|6666666.229936.peg.1640 CDS CP008984.1 1625929 1626585 1 + 657 Ribose 5-phosphate isomerase A (EC 5.3.1.6) D-ribose utilization;
Pentose phosphate pathway
fig|6666666.229936.peg.1641 CDS CP008984.1 1626604 1627836 1 + 1233 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) Glycine and Serine Utilization;
Pyridoxin (Vitamin B6) Biosynthesis;
Serine Biosynthesis
fig|6666666.229936.peg.1642 CDS CP008984.1 1627845 1627964 3 + 120 hypothetical protein - none -
fig|6666666.229936.peg.1643 CDS CP008984.1 1628146 1629144 1 + 999 iron chelatin ABC transporter periplasmic-binding protein - none -
fig|6666666.229936.peg.1644 CDS CP008984.1 1629919 1629278 -1 - 642 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) D-Galacturonate and D-Glucuronate Utilization;
Entner-Doudoroff Pathway
fig|6666666.229936.peg.1645 CDS CP008984.1 1631331 1629928 -3 - 1404 Uronate isomerase (EC 5.3.1.12) D-Galacturonate and D-Glucuronate Utilization
fig|6666666.229936.peg.1646 CDS CP008984.1 1632186 1631341 -3 - 846 D-mannonate oxidoreductase (EC 1.1.1.57) D-Galacturonate and D-Glucuronate Utilization
fig|6666666.229936.peg.1647 CDS CP008984.1 1633142 1632198 -2 - 945 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) D-Galacturonate and D-Glucuronate Utilization;
D-gluconate and ketogluconates metabolism;
Entner-Doudoroff Pathway
fig|6666666.229936.peg.1648 CDS CP008984.1 1634189 1633197 -2 - 993 TRAP-type C4-dicarboxylate transport system, periplasmic component TRAP Transporter collection
fig|6666666.229936.peg.1649 CDS CP008984.1 1634902 1636203 1 + 1302 TRAP-type C4-dicarboxylate transport system, large permease component TRAP Transporter collection
fig|6666666.229936.peg.1650 CDS CP008984.1 1636227 1638602 3 + 2376 Alpha-glucosidase (EC 3.2.1.20) D-Galacturonate and D-Glucuronate Utilization;
Maltose and Maltodextrin Utilization
fig|6666666.229936.peg.1651 CDS CP008984.1 1638617 1639372 2 + 756 Hexuronate utilization operon transcriptional repressor ExuR D-Galacturonate and D-Glucuronate Utilization
fig|6666666.229936.peg.1652 CDS CP008984.1 1639392 1640576 3 + 1185 Mannonate dehydratase (EC 4.2.1.8) D-Galacturonate and D-Glucuronate Utilization
fig|6666666.229936.peg.1653 CDS CP008984.1 1640614 1641171 1 + 558 hypothetical protein - none -
fig|6666666.229936.peg.1654 CDS CP008984.1 1641700 1642491 1 + 792 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229936.peg.1655 CDS CP008984.1 1644271 1642517 -1 - 1755 Putative sulfate permease - none -
fig|6666666.229936.peg.1656 CDS CP008984.1 1644702 1647119 3 + 2418 ATP-dependent protease La (EC 3.4.21.53) Type I Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229936.peg.1657 CDS CP008984.1 1649031 1647181 -3 - 1851 RNA polymerase sigma factor RpoD CBSS-349161.4.peg.2417;
Macromolecular synthesis operon;
Transcription initiation, bacterial sigma factors
fig|6666666.229936.peg.1658 CDS CP008984.1 1650864 1649107 -3 - 1758 DNA primase (EC 2.7.7.-) CBSS-349161.4.peg.2417;
Macromolecular synthesis operon
fig|6666666.229936.peg.1659 CDS CP008984.1 1651201 1650986 -1 - 216 SSU ribosomal protein S21p Macromolecular synthesis operon
fig|6666666.229936.peg.1660 CDS CP008984.1 1651236 1651403 3 + 168 hypothetical protein - none -
fig|6666666.229936.peg.1661 CDS CP008984.1 1651426 1652454 1 + 1029 TsaD/Kae1/Qri7 protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Macromolecular synthesis operon;
YgjD and YeaZ;
YrdC-YciO-Sua5 protein family
fig|6666666.229936.peg.1662 CDS CP008984.1 1652519 1652752 2 + 234 unknown - none -
fig|6666666.229936.peg.1663 CDS CP008984.1 1652755 1653333 1 + 579 Thymidine kinase (EC 2.7.1.21) pyrimidine conversions
fig|6666666.229936.peg.1664 CDS CP008984.1 1655413 1653401 -1 - 2013 DNA ligase (EC 6.5.1.2) DNA Repair Base Excision
fig|6666666.229936.peg.1665 CDS CP008984.1 1656552 1655515 -3 - 1038 Cell division protein ZipA Bacterial Cytoskeleton
fig|6666666.229936.peg.1666 CDS CP008984.1 1656692 1657516 2 + 825 Sulfate transporter, CysZ-type Cysteine Biosynthesis
fig|6666666.229936.peg.1667 CDS CP008984.1 1657617 1658564 3 + 948 Cysteine synthase (EC 2.5.1.47) Cysteine Biosynthesis;
Methionine Biosynthesis
fig|6666666.229936.peg.1668 CDS CP008984.1 1658642 1658529 -2 - 114 hypothetical protein - none -
fig|6666666.229936.peg.1669 CDS CP008984.1 1658930 1658784 -2 - 147 hypothetical protein - none -
fig|6666666.229936.peg.1670 CDS CP008984.1 1659587 1659006 -2 - 582 Hypothetical protein VC0266 (sugar utilization related?) VC0266
fig|6666666.229936.peg.1671 CDS CP008984.1 1660987 1659896 -1 - 1092 GTP-binding and nucleic acid-binding protein YchF Universal GTPases
fig|6666666.229936.peg.1672 CDS CP008984.1 1661859 1661176 -3 - 684 Peptidyl-tRNA hydrolase (EC 3.1.1.29) Cell division-ribosomal stress proteins cluster;
Sporulation-associated proteins with broader functions;
Transcription repair cluster;
Translation termination factors bacterial
fig|6666666.229936.peg.1673 CDS CP008984.1 1662153 1662680 3 + 528 Mobile element protein - none -
fig|6666666.229936.peg.1674 CDS CP008984.1 1670260 1669187 -1 - 1074 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) - none -
fig|6666666.229936.peg.1675 CDS CP008984.1 1670389 1671672 1 + 1284 Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8) CBSS-196164.1.peg.461;
Heme and Siroheme Biosynthesis
fig|6666666.229936.peg.1676 CDS CP008984.1 1674339 1671748 -3 - 2592 [Protein-PII] uridylyltransferase (EC 2.7.7.59) Ammonia assimilation;
CBSS-312309.3.peg.1965
fig|6666666.229936.peg.1677 CDS CP008984.1 1675205 1674405 -2 - 801 Methionine aminopeptidase (EC 3.4.11.18) CBSS-312309.3.peg.1965;
Translation termination factors bacterial
fig|6666666.229936.peg.1678 CDS CP008984.1 1675339 1675680 1 + 342 probable iron binding protein from the HesB_IscA_SufA family - none -
fig|6666666.229936.peg.1679 CDS CP008984.1 1675682 1675897 2 + 216 hypothetical protein - none -
fig|6666666.229936.peg.1680 CDS CP008984.1 1675943 1678336 2 + 2394 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) DNA uptake cluster;
Peptidoglycan Biosynthesis;
Type IV pilus
fig|6666666.229936.peg.1681 CDS CP008984.1 1678635 1680542 3 + 1908 High-affinity Fe2+/Pb2+ permease precursor Iron transport system including ABC transporter
fig|6666666.229936.peg.1682 CDS CP008984.1 1680585 1681106 3 + 522 Periplasmic protein p19 involved in high-affinity Fe2+ transport Iron transport system including ABC transporter
fig|6666666.229936.peg.1683 CDS CP008984.1 1681245 1682675 3 + 1431 Fe2+ ABC transporter, substrate binding protein Iron transport system including ABC transporter
fig|6666666.229936.peg.1684 CDS CP008984.1 1682678 1684003 2 + 1326 Cell division protein FtsX Bacterial Cell Division
fig|6666666.229936.peg.1685 CDS CP008984.1 1684014 1685129 3 + 1116 Fe2+ ABC transporter, permease protein 2 Iron transport system including ABC transporter
fig|6666666.229936.peg.1686 CDS CP008984.1 1685131 1685802 1 + 672 Fe2+ ABC transporter, ATP-binding subunit Iron transport system including ABC transporter
fig|6666666.229936.peg.1687 CDS CP008984.1 1685792 1686283 2 + 492 Possible periplasmic thiredoxin Iron transport system including ABC transporter
fig|6666666.229936.peg.1688 CDS CP008984.1 1686290 1686601 2 + 312 Cytochrome C553 (soluble cytochrome f) Iron transport system including ABC transporter;
Soluble cytochromes and functionally related electron carriers
fig|6666666.229936.peg.1689 CDS CP008984.1 1686690 1686812 3 + 123 hypothetical protein - none -
fig|6666666.229936.peg.1690 CDS CP008984.1 1686929 1687594 2 + 666 Phosphoglycolate phosphatase (EC 3.1.3.18) 2-phosphoglycolate salvage;
Glycolate, glyoxylate interconversions
fig|6666666.229936.peg.1691 CDS CP008984.1 1687758 1687600 -3 - 159 hypothetical protein - none -
fig|6666666.229936.peg.1692 CDS CP008984.1 1688934 1687786 -3 - 1149 Mobile element protein - none -
fig|6666666.229936.peg.1693 CDS CP008984.1 1690342 1689341 -1 - 1002 Related to membrane proteins - none -
fig|6666666.229936.peg.1694 CDS CP008984.1 1694441 1690392 -2 - 4050 HrpA-like helicases - none -
fig|6666666.229936.peg.1695 CDS CP008984.1 1694827 1694438 -1 - 390 COG2363 - none -
fig|6666666.229936.peg.1696 CDS CP008984.1 1695430 1694828 -1 - 603 putative membrane protein - none -
fig|6666666.229936.peg.1697 CDS CP008984.1 1695734 1695405 -2 - 330 Glutaredoxin-related protein Glutaredoxins
fig|6666666.229936.peg.1698 CDS CP008984.1 1697116 1696076 -1 - 1041 Outer membrane protein A precursor Osmoregulation
fig|6666666.229936.peg.1699 CDS CP008984.1 1697601 1700654 3 + 3054 Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD Glycolate, glyoxylate interconversions
fig|6666666.229936.peg.1700 CDS CP008984.1 1700664 1701086 3 + 423 FIG017415: ydiI hotdog fold superfamily - none -
fig|6666666.229936.peg.1701 CDS CP008984.1 1701079 1702143 1 + 1065 Ferrochelatase, protoheme ferro-lyase (EC 4.99.1.1) Heme and Siroheme Biosynthesis
fig|6666666.229936.peg.1702 CDS CP008984.1 1702184 1702684 2 + 501 Thiol peroxidase, Tpx-type (EC 1.11.1.15) Thioredoxin-disulfide reductase
fig|6666666.229936.peg.1703 CDS CP008984.1 1704034 1702889 -1 - 1146 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism
fig|6666666.229936.peg.1704 CDS CP008984.1 1704893 1704090 -2 - 804 Glucosamine-6-phosphate deaminase (EC 3.5.99.6) Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism
fig|6666666.229936.peg.1705 CDS CP008984.1 1705926 1705048 -3 - 879 N-acetylneuraminate lyase (EC 4.1.3.3) Sialic Acid Metabolism
fig|6666666.229936.peg.1706 CDS CP008984.1 1706805 1705936 -3 - 870 Sialic acid utilization regulator, RpiR family Sialic Acid Metabolism
fig|6666666.229936.peg.1707 CDS CP008984.1 1707702 1706815 -3 - 888 N-acetylmannosamine kinase (EC 2.7.1.60) Sialic Acid Metabolism
fig|6666666.229936.peg.1708 CDS CP008984.1 1708417 1707716 -1 - 702 N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9) Sialic Acid Metabolism
fig|6666666.229936.peg.1709 CDS CP008984.1 1708659 1709645 3 + 987 TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein Sialic Acid Metabolism
fig|6666666.229936.peg.1710 CDS CP008984.1 1709709 1711559 3 + 1851 TRAP-type transport system, large permease component, predicted N-acetylneuraminate transporter / TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229936.peg.1711 CDS CP008984.1 1711698 1712828 3 + 1131 Sialic acid-induced transmembrane protein YjhT(NanM), possible mutarotase Sialic Acid Metabolism
fig|6666666.229936.peg.1712 CDS CP008984.1 1713077 1714543 2 + 1467 PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69) Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism;
Sialic Acid Metabolism;
Sialic Acid Metabolism
fig|6666666.229936.peg.1713 CDS CP008984.1 1716289 1715219 -1 - 1071 Outer membrane protein A precursor Osmoregulation
fig|6666666.229936.peg.1714 CDS CP008984.1 1718558 1716519 -2 - 2040 Excinuclease ABC subunit B DNA repair, UvrABC system
fig|6666666.229936.peg.1715 CDS CP008984.1 1720201 1719170 -1 - 1032 putative membrane protein - none -
fig|6666666.229936.peg.1716 CDS CP008984.1 1720881 1720216 -3 - 666 putative exported protein - none -
fig|6666666.229936.peg.1717 CDS CP008984.1 1721284 1722930 1 + 1647 ABC transporter ATP-binding protein - none -
fig|6666666.229936.peg.1718 CDS CP008984.1 1723921 1723034 -1 - 888 putative adhesin/invasin - none -
fig|6666666.229936.peg.1719 CDS CP008984.1 1724424 1726322 3 + 1899 Topoisomerase IV subunit B (EC 5.99.1.-) DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.229936.peg.1720 CDS CP008984.1 1726730 1726906 2 + 177 hypothetical protein - none -
fig|6666666.229936.peg.1721 CDS CP008984.1 1726914 1729169 3 + 2256 Topoisomerase IV subunit A (EC 5.99.1.-) DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.229936.peg.1722 CDS CP008984.1 1729453 1730064 1 + 612 Glutathione S-transferase (EC 2.5.1.18) Glutathione: Non-redox reactions
fig|6666666.229936.peg.1723 CDS CP008984.1 1730825 1730115 -2 - 711 hypothetical protein - none -
fig|6666666.229936.peg.1724 CDS CP008984.1 1731547 1730831 -1 - 717 FIG00904286: hypothetical protein - none -
fig|6666666.229936.peg.1725 CDS CP008984.1 1731649 1732002 1 + 354 Bona fide RidA/YjgF/TdcF/RutC subgroup - none -
fig|6666666.229936.peg.1726 CDS CP008984.1 1732814 1732044 -2 - 771 hypothetical protein - none -
fig|6666666.229936.peg.1727 CDS CP008984.1 1733595 1732909 -3 - 687 hypothetical protein - none -
fig|6666666.229936.peg.1728 CDS CP008984.1 1734551 1733598 -2 - 954 Glycosyltransferase - none -
fig|6666666.229936.peg.1729 CDS CP008984.1 1735585 1734695 -1 - 891 hypothetical protein - none -
fig|6666666.229936.peg.1730 CDS CP008984.1 1737633 1735588 -3 - 2046 DNA polymerase III subunits gamma and tau (EC 2.7.7.7) DNA processing cluster
fig|6666666.229936.peg.1731 CDS CP008984.1 1738277 1737666 -2 - 612 Adenine phosphoribosyltransferase (EC 2.4.2.7) Purine conversions;
cAMP signaling in bacteria
fig|6666666.229936.peg.1732 CDS CP008984.1 1739255 1738299 -2 - 957 Lipid A biosynthesis (KDO) 2-(lauroyl)-lipid IVA acyltransferase (EC 2.3.1.-) KDO2-Lipid A biosynthesis
fig|6666666.229936.peg.1733 CDS CP008984.1 1740138 1739371 -3 - 768 Putative membrane protein YfcA - none -
fig|6666666.229936.peg.1734 CDS CP008984.1 1741014 1740142 -3 - 873 Murein endopeptidase - none -
fig|6666666.229936.peg.1735 CDS CP008984.1 1742109 1741036 -3 - 1074 Chorismate synthase (EC 4.2.3.5) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229936.peg.1736 CDS CP008984.1 1745454 1742131 -3 - 3324 Potassium efflux system KefA protein / Small-conductance mechanosensitive channel Potassium homeostasis
fig|6666666.229936.peg.1737 CDS CP008984.1 1746878 1745463 -2 - 1416 O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229936.peg.1738 CDS CP008984.1 1747501 1746884 -1 - 618 SeqA protein, negative modulator of initiation of replication - none -
fig|6666666.229936.peg.1739 CDS CP008984.1 1747588 1748388 1 + 801 Esterase ybfF (EC 3.1.-.-) - none -
fig|6666666.229936.peg.1740 CDS CP008984.1 1748808 1749332 3 + 525 Flavodoxin 1 Flavodoxin
fig|6666666.229936.peg.1741 CDS CP008984.1 1749351 1749791 3 + 441 Ferric uptake regulation protein FUR Bacterial RNA-metabolizing Zn-dependent hydrolases;
Oxidative stress
fig|6666666.229936.peg.1742 CDS CP008984.1 1749959 1752622 2 + 2664 DNA gyrase subunit A (EC 5.99.1.3) Cell Division Subsystem including YidCD;
DNA gyrase subunits;
DNA replication cluster 1;
DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.229936.peg.1743 CDS CP008984.1 1752690 1753040 3 + 351 FIG00782386: hypothetical protein - none -
fig|6666666.229936.peg.1744 CDS CP008984.1 1753376 1753074 -2 - 303 Translation initiation factor SUI1-related protein Translation initiation factors bacterial
fig|6666666.229936.peg.1745 CDS CP008984.1 1754089 1753397 -1 - 693 Orotidine 5@1-phosphate decarboxylase (EC 4.1.1.23) De Novo Pyrimidine Synthesis;
Riboflavin synthesis cluster
fig|6666666.229936.peg.1746 CDS CP008984.1 1755309 1754119 -3 - 1191 Heat shock (predicted periplasmic) protein YciM, precursor Osmotic stress cluster
fig|6666666.229936.peg.1747 CDS CP008984.1 1755605 1755309 -2 - 297 Inner membrane protein yciS - none -
fig|6666666.229936.peg.1748 CDS CP008984.1 1755991 1755704 -1 - 288 Integration host factor beta subunit DNA structural proteins, bacterial
fig|6666666.229936.peg.1749 CDS CP008984.1 1757699 1756053 -2 - 1647 SSU ribosomal protein S1p Cell division-ribosomal stress proteins cluster
fig|6666666.229936.peg.1750 CDS CP008984.1 1758474 1757797 -3 - 678 Cytidylate kinase (EC 2.7.4.25) pyrimidine conversions
fig|6666666.229936.peg.1751 CDS CP008984.1 1759360 1758467 -1 - 894 Membrane protein LAPB - none -
fig|6666666.229936.peg.1752 CDS CP008984.1 1759653 1760144 3 + 492 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229936.peg.1753 CDS CP008984.1 1760153 1762018 2 + 1866 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229936.peg.1754 CDS CP008984.1 1762096 1764870 1 + 2775 Probable zinc protease pqqL (EC 3.4.99.-) - none -
fig|6666666.229936.peg.1755 CDS CP008984.1 1765268 1764936 -2 - 333 Branched-chain amino acid transport protein azlD - none -
fig|6666666.229936.peg.1756 CDS CP008984.1 1765997 1765269 -2 - 729 Branched-chain amino acid transport protein AzlC - none -
fig|6666666.229936.peg.1757 CDS CP008984.1 1766934 1766002 -3 - 933 Transcriptional activator MetR LysR-family proteins in Escherichia coli;
LysR-family proteins in Salmonella enterica Typhimurium;
Methionine Biosynthesis
fig|6666666.229936.peg.1758 CDS CP008984.1 1767234 1769507 3 + 2274 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) Methionine Biosynthesis
fig|6666666.229936.peg.1759 CDS CP008984.1 1772649 1769938 -3 - 2712 Type III restriction-modification enzyme helicase subunit - none -
fig|6666666.229936.peg.1760 CDS CP008984.1 1773439 1772783 -1 - 657 Type III restriction-modification system methylation subunit (EC 2.1.1.72) Restriction-Modification System
fig|6666666.229936.peg.1761 CDS CP008984.1 1773830 1773399 -2 - 432 Type III restriction-modification system methylation subunit (EC 2.1.1.72) Restriction-Modification System
fig|6666666.229936.peg.1762 CDS CP008984.1 1774226 1774047 -2 - 180 CRISPR-associated helicase Cas3 CRISPRs
fig|6666666.229936.peg.1763 CDS CP008984.1 1774780 1775442 1 + 663 Putative TEGT family carrier/transport protein CBSS-326442.4.peg.1852
fig|6666666.229936.peg.1764 CDS CP008984.1 1775528 1775857 2 + 330 tRNA 2-thiouridine synthesizing protein E (EC 2.8.1.-) CBSS-326442.4.peg.1852;
Lipoic acid synthesis cluster;
Sulfite reduction-associated complex DsrMKJOP and co-clustering genes
fig|6666666.229936.peg.1765 CDS CP008984.1 1775955 1776836 3 + 882 Manganese ABC transporter, periplasmic-binding protein SitA - none -
fig|6666666.229936.peg.1766 CDS CP008984.1 1776836 1777726 2 + 891 Manganese ABC transporter, ATP-binding protein SitB - none -
fig|6666666.229936.peg.1767 CDS CP008984.1 1777726 1778583 1 + 858 Manganese ABC transporter, inner membrane permease protein SitC - none -
fig|6666666.229936.peg.1768 CDS CP008984.1 1778580 1779428 3 + 849 Manganese ABC transporter, inner membrane permease protein SitD - none -
fig|6666666.229936.peg.1769 CDS CP008984.1 1779675 1779403 -3 - 273 Acylphosphate phosphohydrolase (EC 3.6.1.7), putative Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229936.peg.1770 CDS CP008984.1 1779820 1780494 1 + 675 UPF0319 protein YccT precursor CBSS-83333.1.peg.946
fig|6666666.229936.peg.1771 CDS CP008984.1 1780557 1780946 3 + 390 Methylglyoxal synthase (EC 4.2.3.3) CBSS-83333.1.peg.946;
Methylglyoxal Metabolism
fig|6666666.229936.peg.1772 CDS CP008984.1 1781007 1781480 3 + 474 Inner membrane protein YccF CBSS-83333.1.peg.946
fig|6666666.229936.peg.1773 CDS CP008984.1 1781489 1783630 2 + 2142 Putative efflux (PET) family inner membrane protein YccS CBSS-83333.1.peg.946
fig|6666666.229936.peg.1774 CDS CP008984.1 1784133 1783627 -3 - 507 FIG001674: hypothetical protein - none -
fig|6666666.229936.peg.1775 CDS CP008984.1 1784196 1785146 3 + 951 Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p YrdC-YciO-Sua5 protein family
fig|6666666.229936.peg.1776 CDS CP008984.1 1786257 1785313 -3 - 945 Transketolase, C-terminal section (EC 2.2.1.1) Pentose phosphate pathway
fig|6666666.229936.peg.1777 CDS CP008984.1 1787071 1786247 -1 - 825 Transketolase, N-terminal section (EC 2.2.1.1) Pentose phosphate pathway
fig|6666666.229936.peg.1778 CDS CP008984.1 1788289 1787081 -1 - 1209 FIG00732228: membrane protein - none -
fig|6666666.229936.peg.1779 CDS CP008984.1 1788435 1788298 -3 - 138 FIG00732228: membrane protein - none -
fig|6666666.229936.peg.1780 CDS CP008984.1 1788721 1788452 -1 - 270 Putative sugar phosphotransferase component II B - none -
fig|6666666.229936.peg.1781 CDS CP008984.1 1790221 1789223 -1 - 999 FIG00781545: hypothetical protein - none -
fig|6666666.229936.peg.1782 CDS CP008984.1 1792425 1790482 -3 - 1944 ABC transporter ATP-binding protein - none -
fig|6666666.229936.peg.1783 CDS CP008984.1 1793819 1792467 -2 - 1353 Putative dNTP triphosphohydrolase, associated with nucleotidase YfbR Purine conversions;
dNTP triphosphohydrolase protein family
fig|6666666.229936.peg.1784 CDS CP008984.1 1794513 1793821 -3 - 693 LrgA-associated membrane protein LrgB Murein hydrolase regulation and cell death
fig|6666666.229936.peg.1785 CDS CP008984.1 1794872 1794513 -2 - 360 Antiholin-like protein LrgA Murein hydrolase regulation and cell death
fig|6666666.229936.peg.1786 CDS CP008984.1 1795342 1795842 1 + 501 Micrococcal nuclease (thermonuclease) homologs - none -
fig|6666666.229936.peg.1787 CDS CP008984.1 1795848 1797044 3 + 1197 Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA Alanine biosynthesis;
mnm5U34 biosynthesis bacteria;
tRNA modification Archaea
fig|6666666.229936.peg.1788 CDS CP008984.1 1797041 1797421 2 + 381 Cysteine desulfurase CsdA-CsdE, sulfur acceptor protein CsdE - none -
fig|6666666.229936.peg.1789 CDS CP008984.1 1798895 1797465 -2 - 1431 ADP-heptose synthase (EC 2.7.-.-) / D-glycero-beta-D-manno-heptose 7-phosphate kinase LOS core oligosaccharide biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.229936.peg.1790 CDS CP008984.1 1799009 1799944 2 + 936 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) KDO2-Lipid A biosynthesis
fig|6666666.229936.peg.1791 CDS CP008984.1 1800565 1800002 -1 - 564 Putative oxidoreductase component of anaerobic dehydrogenases; Functional role page for Chaperone protein TorD - none -
fig|6666666.229936.peg.1792 CDS CP008984.1 1801176 1800565 -3 - 612 NAD(P)H oxidoreductase YRKL (EC 1.6.99.-) @ Putative NADPH-quinone reductase (modulator of drug activity B) @ Flavodoxin 2 Flavodoxin;
Flavodoxin
fig|6666666.229936.peg.1793 CDS CP008984.1 1801631 1801185 -2 - 447 Putative activity regulator of membrane protease YbbK - none -
fig|6666666.229936.peg.1794 CDS CP008984.1 1802581 1801655 -1 - 927 Putative stomatin/prohibitin-family membrane protease subunit YbbK - none -
fig|6666666.229936.peg.1795 CDS CP008984.1 1803924 1803103 -3 - 822 probable glucanotransferase (endo alpha-1,4 polygalactosaminidase related protein) - none -
fig|6666666.229936.peg.1796 CDS CP008984.1 1805726 1807108 2 + 1383 Cytochrome c551 peroxidase (EC 1.11.1.5) Protection from Reactive Oxygen Species
fig|6666666.229936.peg.1797 CDS CP008984.1 1808353 1807196 -1 - 1158 Ribonuclease D (EC 3.1.26.3) tRNA processing
fig|6666666.229936.peg.1798 CDS CP008984.1 1810112 1808436 -2 - 1677 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) Biotin biosynthesis;
Biotin synthesis cluster
fig|6666666.229936.peg.1799 CDS CP008984.1 1810712 1810155 -2 - 558 Starvation lipoprotein Slp paralog Carbon Starvation
fig|6666666.229936.peg.1800 CDS CP008984.1 1811466 1810744 -3 - 723 TsaB protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Ribosome biogenesis bacterial;
YgjD and YeaZ;
YjeE;
YrdC-YciO-Sua5 protein family
fig|6666666.229936.peg.1801 CDS CP008984.1 1813406 1811469 -2 - 1938 DinG family ATP-dependent helicase YoaA DNA repair, bacterial DinG and relatives
fig|6666666.229936.peg.1802 CDS CP008984.1 1813482 1814300 3 + 819 Aldose 1-epimerase - none -
fig|6666666.229936.peg.1803 CDS CP008984.1 1814710 1815567 1 + 858 FIG000875: Thioredoxin domain-containing protein EC-YbbN - none -
fig|6666666.229936.peg.1804 CDS CP008984.1 1815627 1816580 3 + 954 Thioredoxin reductase (EC 1.8.1.9) Thioredoxin-disulfide reductase;
pyrimidine conversions
fig|6666666.229936.peg.1805 CDS CP008984.1 1816686 1818449 3 + 1764 Transport ATP-binding protein CydD Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229936.peg.1806 CDS CP008984.1 1818449 1820182 2 + 1734 Transport ATP-binding protein CydC Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229936.peg.1807 CDS CP008984.1 1820446 1821312 1 + 867 Acyl-CoA thioesterase II (EC 3.1.2.-) Acyl-CoA thioesterase II
fig|6666666.229936.peg.1808 CDS CP008984.1 1821589 1821461 -1 - 129 hypothetical protein - none -
fig|6666666.229936.peg.1809 CDS CP008984.1 1822371 1821586 -3 - 786 serine/threonine protein kinase - none -
fig|6666666.229936.peg.1810 CDS CP008984.1 1823027 1822392 -2 - 636 unknown - none -
fig|6666666.229936.peg.1811 CDS CP008984.1 1823115 1823699 3 + 585 Putative lipoprotein yceB precursor - none -
fig|6666666.229936.peg.1812 CDS CP008984.1 1824670 1823756 -1 - 915 ROK family Glucokinase with ambiguous substrate specificity - none -
fig|6666666.229936.peg.1813 CDS CP008984.1 1825389 1824721 -3 - 669 Phosphatidylglycerophosphatase B (EC 3.1.3.27) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Osmotic stress cluster
fig|6666666.229936.peg.1814 CDS CP008984.1 1825538 1826191 2 + 654 GTP cyclohydrolase II (EC 3.5.4.25) Molybdenum cofactor biosynthesis;
Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster
fig|6666666.229936.peg.1815 CDS CP008984.1 1826470 1827210 1 + 741 FIG00698611: hypothetical protein - none -
fig|6666666.229936.peg.1816 CDS CP008984.1 1827875 1827372 -2 - 504 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229936.peg.1817 CDS CP008984.1 1828378 1827836 -1 - 543 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229936.peg.1818 CDS CP008984.1 1829197 1828403 -1 - 795 DNA for glycosyltransferase, lytic transglycosylase, dTDP-4-rhamnose reductase Rhamnose containing glycans
fig|6666666.229936.peg.1819 CDS CP008984.1 1830000 1829197 -3 - 804 Exodeoxyribonuclease III (EC 3.1.11.2) DNA repair, bacterial
fig|6666666.229936.peg.1820 CDS CP008984.1 1830269 1830144 -2 - 126 hypothetical protein - none -
fig|6666666.229936.peg.1821 CDS CP008984.1 1831959 1830541 -3 - 1419 Undecaprenyl-phosphate galactosephosphotransferase (EC 2.7.8.6) - none -
fig|6666666.229936.peg.1822 CDS CP008984.1 1832878 1831922 -1 - 957 O antigen biosynthesis rhamnosyltransferase rfbN (EC 2.4.1.-) - none -
fig|6666666.229936.peg.1823 CDS CP008984.1 1833757 1832888 -1 - 870 Alpha-L-Rha alpha-1,3-L-rhamnosyltransferase (EC 2.4.1.-) Rhamnose containing glycans
fig|6666666.229936.peg.1824 CDS CP008984.1 1834834 1834130 -1 - 705 Glycosyltransferase involved in cell wall biogenesis (EC 2.4.-.-) - none -
fig|6666666.229936.peg.1825 CDS CP008984.1 1836554 1835214 -2 - 1341 membrane protein, related to Actinobacillus protein (1944168) - none -
fig|6666666.229936.peg.1826 CDS CP008984.1 1837233 1836541 -3 - 693 NDP-hexose 4-ketoreductase UrdR - none -
fig|6666666.229936.peg.1827 CDS CP008984.1 1838461 1837205 -1 - 1257 DNA for glycosyltransferase, lytic transglycosylase, dTDP-4-rhamnose reductase Rhamnose containing glycans
fig|6666666.229936.peg.1828 CDS CP008984.1 1839432 1838461 -3 - 972 O antigen biosynthesis rhamnosyltransferase rfbN (EC 2.4.1.-) - none -
fig|6666666.229936.peg.1829 CDS CP008984.1 1840055 1839429 -2 - 627 Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40) Rhamnose containing glycans
fig|6666666.229936.peg.1830 CDS CP008984.1 1840960 1840169 -1 - 792 O-antigen export system permease protein RfbD - none -
fig|6666666.229936.peg.1831 CDS CP008984.1 1841533 1840994 -1 - 540 dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) Capsular heptose biosynthesis;
Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229936.peg.1832 CDS CP008984.1 1842414 1841536 -3 - 879 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229936.peg.1833 CDS CP008984.1 1843191 1842415 -3 - 777 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229936.peg.1834 CDS CP008984.1 1844432 1843365 -2 - 1068 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229936.peg.1835 CDS CP008984.1 1845632 1844502 -2 - 1131 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) Murein Hydrolases;
Peptidoglycan Biosynthesis
fig|6666666.229936.peg.1836 CDS CP008984.1 1846443 1845634 -3 - 810 Glucosyl-3-phosphoglycerate synthase (EC 2.4.1.266) - none -
fig|6666666.229936.peg.1837 CDS CP008984.1 1847393 1846512 -2 - 882 Glycosyltransferase - none -
fig|6666666.229936.peg.1838 CDS CP008984.1 1848586 1847393 -1 - 1194 DNA for glycosyltransferase, lytic transglycosylase, dTDP-4-rhamnose reductase Rhamnose containing glycans
fig|6666666.229936.peg.1839 CDS CP008984.1 1849371 1848595 -3 - 777 Lipopolysaccharide core biosynthesis glycosyltransferase WadA - none -
fig|6666666.229936.peg.1840 CDS CP008984.1 1849502 1851025 2 + 1524 putative flippase - none -
fig|6666666.229936.peg.1841 CDS CP008984.1 1851022 1851978 1 + 957 Polysaccharide polymerization protein - none -
fig|6666666.229936.peg.1842 CDS CP008984.1 1852087 1852338 1 + 252 YefM protein (antitoxin to YoeB) Toxin-antitoxin replicon stabilization systems
fig|6666666.229936.peg.1843 CDS CP008984.1 1852335 1852589 3 + 255 YoeB toxin protein Toxin-antitoxin replicon stabilization systems
fig|6666666.229936.peg.1844 CDS CP008984.1 1852602 1853345 3 + 744 Probable transmembrane protein - none -
fig|6666666.229936.peg.1845 CDS CP008984.1 1853522 1854349 2 + 828 DNA ligase (ATP) (EC 6.5.1.1) DNA ligases
fig|6666666.229936.peg.1846 CDS CP008984.1 1856656 1854482 -1 - 2175 ATP-dependent DNA helicase UvrD/PcrA DNA repair, bacterial UvrD and related helicases
fig|6666666.229936.peg.1847 CDS CP008984.1 1858179 1856830 -3 - 1350 Low-affinity gluconate/H+ symporter GntU D-gluconate and ketogluconates metabolism
fig|6666666.229936.peg.1848 CDS CP008984.1 1858397 1858915 2 + 519 Gluconokinase (EC 2.7.1.12) D-gluconate and ketogluconates metabolism;
Entner-Doudoroff Pathway
fig|6666666.229936.peg.1849 CDS CP008984.1 1859034 1858912 -3 - 123 hypothetical protein - none -
fig|6666666.229936.peg.1850 CDS CP008984.1 1859983 1858985 -1 - 999 Gluconate utilization system Gnt-I transcriptional repressor D-gluconate and ketogluconates metabolism
fig|6666666.229936.peg.1851 CDS CP008984.1 1860844 1860032 -1 - 813 Formate dehydrogenase chain D (EC 1.2.1.2) Formate hydrogenase
fig|6666666.229936.peg.1852 CDS CP008984.1 1861065 1864175 3 + 3111 Formate dehydrogenase N alpha subunit (EC 1.2.1.2) @ selenocysteine-containing Formate dehydrogenase;
Formate hydrogenase
fig|6666666.229936.peg.1855 CDS CP008984.1 1864273 1865103 1 + 831 Formate dehydrogenase O beta subunit (EC 1.2.1.2) Formate dehydrogenase;
Formate hydrogenase
fig|6666666.229936.peg.1856 CDS CP008984.1 1865096 1865809 2 + 714 Formate dehydrogenase -O, gamma subunit (EC 1.2.1.2) Anaerobic respiratory reductases;
Formate hydrogenase
fig|6666666.229936.peg.1857 CDS CP008984.1 1868661 1866376 -3 - 2286 [NiFe] hydrogenase metallocenter assembly protein HypF G3E family of P-loop GTPases (metallocenter biosynthesis);
NiFe hydrogenase maturation
fig|6666666.229936.peg.1858 CDS CP008984.1 1868958 1869557 3 + 600 Hydrogenase-4 component A - none -
fig|6666666.229936.peg.1859 CDS CP008984.1 1869590 1871611 2 + 2022 Hydrogenase-4 component B (EC 1.-.-.-) / Formate hydrogenlyase subunit 3 Formate hydrogenase;
Formate hydrogenase
fig|6666666.229936.peg.1860 CDS CP008984.1 1871622 1872584 3 + 963 Hydrogenase-4 component C - none -
fig|6666666.229936.peg.1861 CDS CP008984.1 1872597 1874042 3 + 1446 Hydrogenase-4 component D - none -
fig|6666666.229936.peg.1862 CDS CP008984.1 1874053 1874691 1 + 639 Hydrogenase-4 component E (EC 1.-.-.-) Formate hydrogenase
fig|6666666.229936.peg.1863 CDS CP008984.1 1874696 1876234 2 + 1539 Hydrogenase-4 component F - none -
fig|6666666.229936.peg.1864 CDS CP008984.1 1876253 1877983 2 + 1731 Formate hydrogenlyase subunit 5 Formate hydrogenase
fig|6666666.229936.peg.1865 CDS CP008984.1 1877997 1878593 3 + 597 Formate hydrogenlyase complex 3 iron-sulfur protein; Formate hydrogenlyase subunit 6; Ni,Fe-hydrogenase III medium subunit Formate hydrogenase
fig|6666666.229936.peg.1866 CDS CP008984.1 1878641 1879417 2 + 777 Formate hydrogenlyase subunit 7 Formate hydrogenase
fig|6666666.229936.peg.1867 CDS CP008984.1 1879552 1879956 1 + 405 Formate hydrogenlyase transcriptional activator Formate hydrogenase
fig|6666666.229936.peg.1868 CDS CP008984.1 1879985 1880407 2 + 423 Hydrogenase 3 maturation protease (EC 3.4.-.-) - none -
fig|6666666.229936.peg.1869 CDS CP008984.1 1880936 1883158 2 + 2223 Formate dehydrogenase H (EC 1.2.1.2) @ selenocysteine-containing Formate dehydrogenase
fig|6666666.229936.peg.1872 CDS CP008984.1 1884201 1883329 -3 - 873 Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) Serine-glyoxylate cycle;
TCA Cycle
fig|6666666.229936.peg.1873 CDS CP008984.1 1885381 1884212 -1 - 1170 Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) Serine-glyoxylate cycle;
TCA Cycle
fig|6666666.229936.peg.1874 CDS CP008984.1 1885578 1885438 -3 - 141 hypothetical protein - none -
fig|6666666.229936.peg.1875 CDS CP008984.1 1886791 1885568 -1 - 1224 Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61) Dehydrogenase complexes;
TCA Cycle
fig|6666666.229936.peg.1876 CDS CP008984.1 1889724 1886917 -3 - 2808 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) Dehydrogenase complexes;
TCA Cycle
fig|6666666.229936.peg.1877 CDS CP008984.1 1889809 1889931 1 + 123 hypothetical protein - none -
fig|6666666.229936.peg.1878 CDS CP008984.1 1890638 1890000 -2 - 639 Hypothetical metal-binding enzyme, YcbL homolog CBSS-228400.4.peg.1623
fig|6666666.229936.peg.1879 CDS CP008984.1 1891276 1890716 -1 - 561 FIG001587: exported protein CBSS-228400.4.peg.1623
fig|6666666.229936.peg.1880 CDS CP008984.1 1892849 1891341 -2 - 1509 L,D-transpeptidase YcbB CBSS-228400.4.peg.1623
fig|6666666.229936.peg.1881 CDS CP008984.1 1894984 1892927 -1 - 2058 Tail-specific protease precursor (EC 3.4.21.102) - none -
fig|6666666.229936.peg.1882 CDS CP008984.1 1895666 1895058 -2 - 609 ProQ: influences osmotic activation of compatible solute ProP - none -
fig|6666666.229936.peg.1883 CDS CP008984.1 1895959 1897167 1 + 1209 Paraquat-inducible protein A Oxidative stress
fig|6666666.229936.peg.1884 CDS CP008984.1 1897130 1899787 2 + 2658 Paraquat-inducible protein B Oxidative stress
fig|6666666.229936.peg.1885 CDS CP008984.1 1901107 1899863 -1 - 1245 Tripeptide aminopeptidase (EC 3.4.11.4) - none -
fig|6666666.229936.peg.1886 CDS CP008984.1 1901371 1902489 1 + 1119 Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) Polyamine Metabolism
fig|6666666.229936.peg.1887 CDS CP008984.1 1902473 1903333 2 + 861 Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) Polyamine Metabolism
fig|6666666.229936.peg.1888 CDS CP008984.1 1903333 1904106 1 + 774 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) Polyamine Metabolism
fig|6666666.229936.peg.1889 CDS CP008984.1 1904237 1905334 2 + 1098 ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1) Polyamine Metabolism
fig|6666666.229936.peg.1890 CDS CP008984.1 1905456 1906352 3 + 897 Cytidine deaminase (EC 3.5.4.5) Murein hydrolase regulation and cell death;
pyrimidine conversions;
tRNA modification Bacteria
fig|6666666.229936.peg.1891 CDS CP008984.1 1906450 1906337 -1 - 114 hypothetical protein - none -
fig|6666666.229936.peg.1892 CDS CP008984.1 1907747 1906431 -2 - 1317 Seryl-tRNA synthetase (EC 6.1.1.11) CBSS-326442.4.peg.1852;
Glycine and Serine Utilization;
tRNA aminoacylation, Ser
fig|6666666.229936.peg.1893 CDS CP008984.1 1908055 1909722 1 + 1668 C4-dicarboxylate transporter DcuB - none -
fig|6666666.229936.peg.1894 CDS CP008984.1 1911559 1910219 -1 - 1341 FIG065221: Holliday junction DNA helicase CBSS-83333.1.peg.876
fig|6666666.229936.peg.1895 CDS CP008984.1 1912189 1911572 -1 - 618 Outer membrane lipoprotein carrier protein LolA CBSS-83333.1.peg.876;
Lipopolysaccharide assembly;
Lipoprotein sorting system
fig|6666666.229936.peg.1896 CDS CP008984.1 1915026 1912282 -3 - 2745 Cell division protein FtsK Bacterial Cell Division;
Bacterial Cytoskeleton;
Bacterial RNA-metabolizing Zn-dependent hydrolases;
CBSS-83333.1.peg.876
fig|6666666.229936.peg.1897 CDS CP008984.1 1915509 1915030 -3 - 480 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229936.peg.1898 CDS CP008984.1 1917421 1916048 -1 - 1374 DNA repair protein RadA DNA repair, bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229936.peg.1899 CDS CP008984.1 1918578 1917424 -3 - 1155 Adenylate cyclase (EC 4.6.1.1) cAMP signaling in bacteria
fig|6666666.229936.peg.1900 CDS CP008984.1 1918743 1919423 3 + 681 Phosphate transport regulator (distant homolog of PhoU) Phosphate metabolism
fig|6666666.229936.peg.1901 CDS CP008984.1 1919449 1920714 1 + 1266 Probable low-affinity inorganic phosphate transporter Phosphate metabolism
fig|6666666.229936.peg.1902 CDS CP008984.1 1920783 1921394 3 + 612 SH3 domain protein - none -
fig|6666666.229936.peg.1903 CDS CP008984.1 1921394 1922698 2 + 1305 tRNA nucleotidyltransferase (EC 2.7.7.21) (EC 2.7.7.25) Polyadenylation bacterial;
tRNA nucleotidyltransferase
fig|6666666.229936.peg.1904 CDS CP008984.1 1922733 1923356 3 + 624 Outer membrane lipoprotein LolB precursor - none -
fig|6666666.229936.peg.1905 CDS CP008984.1 1923356 1924267 2 + 912 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148) A Gammaproteobacteria Cluster Relating to Translation;
Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.229936.peg.1906 CDS CP008984.1 1924308 1925258 3 + 951 Ribose-phosphate pyrophosphokinase (EC 2.7.6.1) A Gammaproteobacteria Cluster Relating to Translation;
Pentose phosphate pathway;
Transcription repair cluster
fig|6666666.229936.peg.1907 CDS CP008984.1 1925435 1925581 2 + 147 hypothetical protein - none -
fig|6666666.229936.peg.1908 CDS CP008984.1 1925890 1927035 1 + 1146 L-lactate dehydrogenase (EC 1.1.2.3) Lactate utilization;
Respiratory dehydrogenases 1
fig|6666666.229936.peg.1909 CDS CP008984.1 1927278 1928867 3 + 1590 L-lactate permease Lactate utilization
fig|6666666.229936.peg.1910 CDS CP008984.1 1929354 1929022 -3 - 333 UPF0265 protein YeeX Broadly distributed proteins not in subsystems
fig|6666666.229936.peg.1911 CDS CP008984.1 1929379 1929495 1 + 117 hypothetical protein - none -
fig|6666666.229936.peg.1912 CDS CP008984.1 1929554 1930636 2 + 1083 Phosphoserine aminotransferase (EC 2.6.1.52) Glycine and Serine Utilization;
Pyridoxin (Vitamin B6) Biosynthesis;
Serine Biosynthesis
fig|6666666.229936.peg.1913 CDS CP008984.1 1930663 1931808 1 + 1146 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) @ Histidinol-phosphate aminotransferase (EC 2.6.1.9) Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229936.peg.1914 CDS CP008984.1 1931819 1933150 2 + 1332 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229936.peg.1915 CDS CP008984.1 1933705 1933238 -1 - 468 Ribonuclease HI (EC 3.1.26.4) CBSS-228410.1.peg.134;
CBSS-342610.3.peg.1536;
Ribonuclease H
fig|6666666.229936.peg.1916 CDS CP008984.1 1933773 1934534 3 + 762 DNA polymerase III epsilon subunit (EC 2.7.7.7) CBSS-228410.1.peg.134;
CBSS-342610.3.peg.1536
fig|6666666.229936.peg.1917 CDS CP008984.1 1934986 1935240 1 + 255 RelB/StbD replicon stabilization protein (antitoxin to RelE/StbE) Toxin-antitoxin replicon stabilization systems
fig|6666666.229936.peg.1918 CDS CP008984.1 1935230 1935520 2 + 291 RelE/StbE replicon stabilization toxin Toxin-antitoxin replicon stabilization systems
fig|6666666.229936.peg.1919 CDS CP008984.1 1935918 1935577 -3 - 342 conserved hypothetical protein - none -
fig|6666666.229936.peg.1920 CDS CP008984.1 1936260 1936712 3 + 453 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) Ammonia assimilation;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229936.peg.1921 CDS CP008984.1 1936883 1938271 2 + 1389 Putative protease - none -
fig|6666666.229936.peg.1922 CDS CP008984.1 1938568 1939659 1 + 1092 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) CBSS-211586.1.peg.2832;
Queuosine-Archaeosine Biosynthesis;
Scaffold proteins for [4Fe-4S] cluster assembly (MRP family);
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229936.peg.1923 CDS CP008984.1 1940839 1939703 -1 - 1137 Periplasmic aromatic amino acid aminotransferase beta precursor (EC 2.6.1.57) Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229936.peg.1924 CDS CP008984.1 1941312 1942463 3 + 1152 tRNA-guanine transglycosylase (EC 2.4.2.29) CBSS-211586.1.peg.2832;
Queuosine-Archaeosine Biosynthesis;
Scaffold proteins for [4Fe-4S] cluster assembly (MRP family);
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229936.peg.1925 CDS CP008984.1 1942598 1942738 2 + 141 hypothetical protein - none -
fig|6666666.229936.peg.1926 CDS CP008984.1 1942755 1943054 3 + 300 Preprotein translocase subunit YajC (TC 3.A.5.1.1) CBSS-211586.1.peg.2832
fig|6666666.229936.peg.1927 CDS CP008984.1 1943118 1944935 3 + 1818 Protein-export membrane protein SecD (TC 3.A.5.1.1) CBSS-211586.1.peg.2832
fig|6666666.229936.peg.1928 CDS CP008984.1 1944952 1945917 1 + 966 Protein-export membrane protein SecF (TC 3.A.5.1.1) CBSS-211586.1.peg.2832
fig|6666666.229936.peg.1929 CDS CP008984.1 1946137 1948764 1 + 2628 Iron siderophore receptor protein - none -
fig|6666666.229936.peg.1930 CDS CP008984.1 1948951 1948835 -1 - 117 hypothetical protein - none -
fig|6666666.229936.peg.1931 CDS CP008984.1 1949114 1951735 2 + 2622 Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) 5-FCL-like protein;
Butanol Biosynthesis;
Butanol Biosynthesis;
Fermentations: Lactate;
Fermentations: Mixed acid;
Fermentations: Mixed acid;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229936.peg.1932 CDS CP008984.1 1952771 1951818 -2 - 954 Inositol transport system permease protein Inositol catabolism
fig|6666666.229936.peg.1933 CDS CP008984.1 1954327 1952822 -1 - 1506 Inositol transport system ATP-binding protein Inositol catabolism
fig|6666666.229936.peg.1934 CDS CP008984.1 1955328 1954396 -3 - 933 Inositol transport system sugar-binding protein Inositol catabolism
fig|6666666.229936.peg.1935 CDS CP008984.1 1956350 1955412 -2 - 939 Inositol transport system sugar-binding protein Inositol catabolism
fig|6666666.229936.peg.1936 CDS CP008984.1 1957790 1956651 -2 - 1140 Myo-inositol 2-dehydrogenase 2 (EC 1.1.1.18) Inositol catabolism
fig|6666666.229936.peg.1937 CDS CP008984.1 1959389 1957881 -2 - 1509 Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27) Inositol catabolism
fig|6666666.229936.peg.1938 CDS CP008984.1 1960970 1959627 -2 - 1344 putative hexose phosphate transport protein - none -
fig|6666666.229936.peg.1939 CDS CP008984.1 1961791 1960988 -1 - 804 Inositol-1-monophosphatase (EC 3.1.3.25) - none -
fig|6666666.229936.peg.1940 CDS CP008984.1 1962055 1962885 1 + 831 5-deoxy-glucuronate isomerase (EC 5.3.1.-) Inositol catabolism
fig|6666666.229936.peg.1941 CDS CP008984.1 1962971 1962840 -2 - 132 hypothetical protein - none -
fig|6666666.229936.peg.1942 CDS CP008984.1 1963014 1963853 3 + 840 Predicted transcriptional regulator of the myo-inositol catabolic operon Inositol catabolism
fig|6666666.229936.peg.1943 CDS CP008984.1 1965800 1963893 -2 - 1908 5-keto-2-deoxygluconokinase (EC 2.7.1.92) / uncharacterized domain Inositol catabolism;
Inositol catabolism
fig|6666666.229936.peg.1944 CDS CP008984.1 1966048 1965920 -1 - 129 hypothetical protein - none -
fig|6666666.229936.peg.1945 CDS CP008984.1 1966112 1968058 2 + 1947 Epi-inositol hydrolase (EC 3.7.1.-) Inositol catabolism
fig|6666666.229936.peg.1946 CDS CP008984.1 1968113 1969009 2 + 897 Inosose dehydratase (EC 4.2.1.44) Inositol catabolism
fig|6666666.229936.peg.1947 CDS CP008984.1 1969012 1970022 1 + 1011 Myo-inositol 2-dehydrogenase 1 (EC 1.1.1.18) Inositol catabolism
fig|6666666.229936.peg.1948 CDS CP008984.1 1971725 1970292 -2 - 1434 RTX toxin transporter, determinant D # Leukotoxin secretion protein D - none -
fig|6666666.229936.peg.1949 CDS CP008984.1 1973863 1971740 -1 - 2124 RTX toxin transporter - none -
fig|6666666.229936.peg.1950 CDS CP008984.1 1977099 1973932 -3 - 3168 bifunctional hemolysin-adenylate cyclase precursor cAMP signaling in bacteria
fig|6666666.229936.peg.1951 CDS CP008984.1 1977618 1977112 -3 - 507 RTX toxin activating lysine-acyltransferase (EC 2.3.1.-) - none -
fig|6666666.229936.peg.1952 CDS CP008984.1 1979457 1978195 -3 - 1263 Serine hydroxymethyltransferase (EC 2.1.2.1) 5-FCL-like protein;
Glycine Biosynthesis;
Glycine and Serine Utilization;
Serine-glyoxylate cycle;
Serine Biosynthesis;
YrdC-YciO-Sua5 protein family
fig|6666666.229936.peg.1953 CDS CP008984.1 1980134 1979592 -2 - 543 hypothetical protein - none -
fig|6666666.229936.peg.1954 CDS CP008984.1 1980510 1980358 -3 - 153 hypothetical protein - none -
fig|6666666.229936.peg.1955 CDS CP008984.1 1980662 1980513 -2 - 150 hypothetical protein - none -
fig|6666666.229936.peg.1956 CDS CP008984.1 1981753 1980749 -1 - 1005 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) RNA methylation
fig|6666666.229936.peg.1957 CDS CP008984.1 1981809 1982258 3 + 450 DNA polymerase III psi subunit (EC 2.7.7.7) - none -
fig|6666666.229936.peg.1958 CDS CP008984.1 1982268 1982711 3 + 444 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Ribosome biogenesis bacterial;
YrdC-YciO-Sua5 protein family
fig|6666666.229936.peg.1959 CDS CP008984.1 1986129 1982713 -3 - 3417 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) DNA repair, bacterial RecBCD pathway
fig|6666666.229936.peg.1960 CDS CP008984.1 1986332 1986141 -2 - 192 FIG00696353: hypothetical protein - none -
fig|6666666.229936.peg.1961 CDS CP008984.1 1987017 1986346 -3 - 672 Type II secretory pathway, component PulJ - none -
fig|6666666.229936.peg.1962 CDS CP008984.1 1987648 1987031 -1 - 618 Type II secretory pathway, pseudopilin PulG - none -
fig|6666666.229936.peg.1963 CDS CP008984.1 1988724 1988257 -3 - 468 18K peptidoglycan-associated outer membrane lipoprotein; Peptidoglycan-associated lipoprotein precursor; Outer membrane protein P6; OmpA/MotB precursor Ton and Tol transport systems
fig|6666666.229936.peg.1964 CDS CP008984.1 1990019 1988739 -2 - 1281 tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins Ton and Tol transport systems
fig|6666666.229936.peg.1965 CDS CP008984.1 1991262 1990054 -3 - 1209 TolA protein Ton and Tol transport systems
fig|6666666.229936.peg.1966 CDS CP008984.1 1991701 1991279 -1 - 423 Tol biopolymer transport system, TolR protein Ton and Tol transport systems
fig|6666666.229936.peg.1967 CDS CP008984.1 1992476 1991787 -2 - 690 MotA/TolQ/ExbB proton channel family protein Ton and Tol transport systems
fig|6666666.229936.peg.1968 CDS CP008984.1 1992910 1992506 -1 - 405 4-hydroxybenzoyl-CoA thioesterase family active site Ton and Tol transport systems
fig|6666666.229936.peg.1969 CDS CP008984.1 1992975 1993094 3 + 120 hypothetical protein - none -
fig|6666666.229936.peg.1970 CDS CP008984.1 1994555 1993419 -2 - 1137 Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229936.peg.1971 CDS CP008984.1 1996030 1994570 -1 - 1461 Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229936.peg.1972 CDS CP008984.1 1996587 1996898 3 + 312 Chromosome segregation ATPases - none -
fig|6666666.229936.peg.1973 CDS CP008984.1 1997971 1996952 -1 - 1020 Holliday junction DNA helicase RuvB RuvABC plus a hypothetical
fig|6666666.229936.peg.1974 CDS CP008984.1 1998594 1997980 -3 - 615 Holliday junction DNA helicase RuvA RuvABC plus a hypothetical
fig|6666666.229936.peg.1975 CDS CP008984.1 1999230 1998658 -3 - 573 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) RuvABC plus a hypothetical
fig|6666666.229936.peg.1976 CDS CP008984.1 1999696 1999286 -1 - 411 excinuclease ABC subunit A - none -
fig|6666666.229936.peg.1977 CDS CP008984.1 2000448 1999708 -3 - 741 FIG000859: hypothetical protein YebC Riboflavin, FMN and FAD metabolism in plants;
RuvABC plus a hypothetical
fig|6666666.229936.peg.1978 CDS CP008984.1 2000853 2000482 -3 - 372 Dihydroneopterin triphosphate pyrophosphohydrolase type 2 (nudB) Folate Biosynthesis
fig|6666666.229936.peg.1979 CDS CP008984.1 2002302 2001034 -3 - 1269 Mn2+ and Fe2+ transporters of the NRAMP family - none -
fig|6666666.229936.peg.1980 CDS CP008984.1 2002520 2002660 2 + 141 hypothetical protein - none -
fig|6666666.229936.peg.1981 CDS CP008984.1 2004472 2002694 -1 - 1779 Aspartyl-tRNA synthetase (EC 6.1.1.12) tRNA aminoacylation, Asp and Asn
fig|6666666.229936.peg.1982 CDS CP008984.1 2004680 2005207 2 + 528 membrane protein, putative - none -
fig|6666666.229936.peg.1983 CDS CP008984.1 2005279 2006004 1 + 726 tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229936.peg.1984 CDS CP008984.1 2008651 2006084 -1 - 2568 FIG00362583: hypothetical protein - none -
fig|6666666.229936.peg.1985 CDS CP008984.1 2010125 2008794 -2 - 1332 Glycerol-3-phosphate transporter - none -
fig|6666666.229936.peg.1986 CDS CP008984.1 2010526 2012478 1 + 1953 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229936.peg.1987 CDS CP008984.1 2012637 2013044 3 + 408 Lactoylglutathione lyase (EC 4.4.1.5) Glutathione: Non-redox reactions;
Methylglyoxal Metabolism
fig|6666666.229936.peg.1988 CDS CP008984.1 2013131 2013784 2 + 654 Ribonuclease T (EC 3.1.13.-) tRNA processing
fig|6666666.229936.peg.1989 CDS CP008984.1 2014136 2015488 2 + 1353 Histidine permease YuiF - none -
fig|6666666.229936.peg.1990 CDS CP008984.1 2015552 2016118 2 + 567 Primosomal replication protein N@1@1 - none -
fig|6666666.229936.peg.1991 CDS CP008984.1 2017599 2016175 -3 - 1425 tRNA-i(6)A37 methylthiotransferase Methylthiotransferases;
tRNA-methylthiotransferase containing cluster;
tRNA modification Archaea;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229936.peg.1992 CDS CP008984.1 2017707 2017835 3 + 129 hypothetical protein - none -
fig|6666666.229936.peg.1993 CDS CP008984.1 2017943 2018086 2 + 144 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-) CBSS-87626.3.peg.3639;
Ubiquinone Biosynthesis
fig|6666666.229936.peg.1994 CDS CP008984.1 2019531 2018800 -3 - 732 FIG053235: Diacylglucosamine hydrolase like Llipid A biosynthesis cluster
fig|6666666.229936.peg.1995 CDS CP008984.1 2020522 2019533 -1 - 990 Octaprenyl diphosphate synthase (EC 2.5.1.90) Isoprenoinds for Quinones;
Polyprenyl Diphosphate Biosynthesis
fig|6666666.229936.peg.1996 CDS CP008984.1 2020770 2021081 3 + 312 LSU ribosomal protein L21p CBSS-176279.3.peg.868
fig|6666666.229936.peg.1997 CDS CP008984.1 2021102 2021359 2 + 258 LSU ribosomal protein L27p CBSS-176279.3.peg.868
fig|6666666.229936.peg.1998 CDS CP008984.1 2021431 2022363 1 + 933 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229936.peg.1999 CDS CP008984.1 2022441 2023358 3 + 918 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229936.peg.2000 CDS CP008984.1 2023395 2024570 3 + 1176 GTP-binding protein Obg CBSS-176279.3.peg.868;
Universal GTPases
fig|6666666.229936.peg.2001 CDS CP008984.1 2024686 2024567 -1 - 120 tmRNA-binding protein SmpB Heat shock dnaK gene cluster extended;
Translation termination factors bacterial
fig|6666666.229936.peg.2002 CDS CP008984.1 2025120 2024638 -3 - 483 tmRNA-binding protein SmpB Heat shock dnaK gene cluster extended;
Translation termination factors bacterial
fig|6666666.229936.peg.2003 CDS CP008984.1 2025465 2025328 -3 - 138 hypothetical protein - none -
fig|6666666.229936.peg.2004 CDS CP008984.1 2025488 2027113 2 + 1626 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229936.peg.2005 CDS CP008984.1 2027214 2028134 3 + 921 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229936.peg.2006 CDS CP008984.1 2028144 2029082 3 + 939 Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229936.peg.2007 CDS CP008984.1 2029092 2030075 3 + 984 Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229936.peg.2008 CDS CP008984.1 2030072 2031070 2 + 999 Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.229936.peg.2009 CDS CP008984.1 2031884 2031177 -2 - 708 Aerobic respiration control protein arcA - none -
fig|6666666.229936.peg.2010 CDS CP008984.1 2032286 2032146 -2 - 141 LSU ribosomal protein L36p - none -
fig|6666666.229936.peg.2011 CDS CP008984.1 2032562 2032296 -2 - 267 LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-independent - none -
fig|6666666.229936.peg.2012 CDS CP008984.1 2033343 2032774 -3 - 570 Lysine decarboxylase family - none -
fig|6666666.229936.peg.2013 CDS CP008984.1 2033486 2035276 2 + 1791 Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8) Biogenesis of c-type cytochromes;
Periplasmic disulfide interchange
fig|6666666.229936.peg.2014 CDS CP008984.1 2035378 2035265 -1 - 114 hypothetical protein - none -
fig|6666666.229936.peg.2015 CDS CP008984.1 2035356 2035745 3 + 390 INTEGRAL MEMBRANE PROTEIN (Rhomboid family) - none -
fig|6666666.229936.peg.2016 CDS CP008984.1 2039025 2036143 -3 - 2883 Ribonuclease E (EC 3.1.26.12) RNA processing and degradation, bacterial;
Ribosome biogenesis bacterial
fig|6666666.229936.peg.2017 CDS CP008984.1 2039441 2039301 -2 - 141 hypothetical protein - none -
fig|6666666.229936.peg.2018 CDS CP008984.1 2039500 2040459 1 + 960 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) RNA pseudouridine syntheses;
Ribosome biogenesis bacterial
fig|6666666.229936.peg.2019 CDS CP008984.1 2040873 2040658 -3 - 216 Thioredoxin - none -
fig|6666666.229936.peg.2020 CDS CP008984.1 2042076 2041081 -3 - 996 D-lactate dehydrogenase (EC 1.1.1.28) Fermentations: Lactate;
Fermentations: Mixed acid
fig|6666666.229936.peg.2021 CDS CP008984.1 2043230 2042100 -2 - 1131 Cystathionine gamma-synthase (EC 2.5.1.48) Methionine Biosynthesis
fig|6666666.229936.peg.2022 CDS CP008984.1 2044721 2045236 2 + 516 ATPase provides energy for both assembly of type IV secretion complex and secretion of T-DNA complex (VirB4) - none -
fig|6666666.229936.peg.2023 CDS CP008984.1 2045406 2045684 3 + 279 hypothetical protein - none -
fig|6666666.229936.peg.2024 CDS CP008984.1 2047379 2046234 -2 - 1146 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) Proline Synthesis
fig|6666666.229936.peg.2025 CDS CP008984.1 2048161 2047502 -1 - 660 putative membrane protein - none -
fig|6666666.229936.peg.2026 CDS CP008984.1 2048358 2048242 -3 - 117 hypothetical protein - none -
fig|6666666.229936.peg.2027 CDS CP008984.1 2048373 2049179 3 + 807 Permeases of the drug/metabolite transporter (DMT) superfamily - none -
fig|6666666.229936.peg.2028 CDS CP008984.1 2050450 2049443 -1 - 1008 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) Cluster Ytf and putative sugar transporter;
Glycolysis and Gluconeogenesis;
Putative sugar ABC transporter (ytf cluster)
fig|6666666.229936.peg.2029 CDS CP008984.1 2050608 2051981 3 + 1374 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (EC 6.3.2.-) Peptidoglycan biosynthesis--gjo;
Recycling of Peptidoglycan Amino Acids
fig|6666666.229936.peg.2030 CDS CP008984.1 2052361 2053479 1 + 1119 Membrane-bound lytic murein transglycosylase A precursor (EC 3.2.1.-) Murein Hydrolases
fig|6666666.229936.peg.2031 CDS CP008984.1 2053479 2054249 3 + 771 HesA/MoeB/ThiF family protein related to EC-YgdL - none -
fig|6666666.229936.peg.2032 CDS CP008984.1 2054349 2055368 3 + 1020 Zinc ABC transporter, periplasmic-binding protein ZnuA - none -
fig|6666666.229936.peg.2033 CDS CP008984.1 2055496 2056308 1 + 813 Outer membrane lipoprotein e (P4) / NMN 5@1-nucleotidase, extracellular (EC 3.1.3.5) NAD and NADP cofactor biosynthesis global
fig|6666666.229936.peg.2034 CDS CP008984.1 2056879 2056388 -1 - 492 FIG001943: hypothetical protein YajQ Broadly distributed proteins not in subsystems
fig|6666666.229936.peg.2035 CDS CP008984.1 2057834 2056890 -2 - 945 Phosphoserine phosphatase (EC 3.1.3.3) Glycine and Serine Utilization;
Serine Biosynthesis;
Serine Biosynthesis
fig|6666666.229936.peg.2036 CDS CP008984.1 2057910 2058587 3 + 678 Lipoate-protein ligase A Lipoic acid metabolism
fig|6666666.229936.peg.2037 CDS CP008984.1 2058663 2058544 -3 - 120 hypothetical protein - none -
fig|6666666.229936.peg.2038 CDS CP008984.1 2058960 2058697 -3 - 264 SSU ribosomal protein S20p - none -
fig|6666666.229936.peg.2039 CDS CP008984.1 2059228 2060805 1 + 1578 Proposed peptidoglycan lipid II flippase MurJ Peptidoglycan lipid II flippase
fig|6666666.229936.peg.2040 CDS CP008984.1 2060883 2061809 3 + 927 Riboflavin kinase (EC 2.7.1.26) / FMN adenylyltransferase (EC 2.7.7.2) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin, FMN and FAD metabolism in plants;
riboflavin to FAD;
riboflavin to FAD
fig|6666666.229936.peg.2041 CDS CP008984.1 2062023 2062187 3 + 165 FIG01055344: hypothetical protein - none -
fig|6666666.229936.peg.2042 CDS CP008984.1 2062225 2065047 1 + 2823 Isoleucyl-tRNA synthetase (EC 6.1.1.5) tRNA aminoacylation, Ile
fig|6666666.229936.peg.2043 CDS CP008984.1 2065127 2065621 2 + 495 Lipoprotein signal peptidase (EC 3.4.23.36) Lipoprotein Biosynthesis;
Signal peptidase
fig|6666666.229936.peg.2044 CDS CP008984.1 2065621 2066565 1 + 945 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.229936.peg.2045 CDS CP008984.1 2068328 2067030 -2 - 1299 Cell division trigger factor (EC 5.2.1.8) Bacterial Cell Division
fig|6666666.229936.peg.2046 CDS CP008984.1 2069385 2068492 -3 - 894 Tyrosine recombinase XerD - none -
fig|6666666.229936.peg.2047 CDS CP008984.1 2070548 2069388 -2 - 1161 Probable 3-phenylpropionic acid transporter - none -
fig|6666666.229936.peg.2048 CDS CP008984.1 2070787 2070548 -1 - 240 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) A Hypothetical Protein Related to Proline Metabolism;
CBSS-630.2.peg.3360;
Proline Synthesis
fig|6666666.229936.peg.2049 CDS CP008984.1 2071251 2070793 -3 - 459 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) A Hypothetical Protein Related to Proline Metabolism;
CBSS-630.2.peg.3360;
Proline Synthesis
fig|6666666.229936.peg.2050 CDS CP008984.1 2071314 2072219 3 + 906 DNA recombination-dependent growth factor C DNA repair, bacterial
fig|6666666.229936.peg.2051 CDS CP008984.1 2072684 2072310 -2 - 375 opacity associated protein B - none -
fig|6666666.229936.peg.2052 CDS CP008984.1 2074059 2072746 -3 - 1314 Cell envelope opacity-associated protein A - none -
fig|6666666.229936.peg.2053 CDS CP008984.1 2075262 2074231 -3 - 1032 Lysyl-lysine 2,3-aminomutase Translation elongation factor P lysylation
fig|6666666.229936.peg.2054 CDS CP008984.1 2075327 2075848 2 + 522 Translation elongation factor P Translation elongation factor P lysylation;
Translation elongation factors bacterial
fig|6666666.229936.peg.2055 CDS CP008984.1 2076178 2077554 1 + 1377 Tryptophanase (EC 4.1.99.1) - none -
fig|6666666.229936.peg.2056 CDS CP008984.1 2077716 2078930 3 + 1215 Tyrosine-specific transport protein - none -
fig|6666666.229936.peg.2057 CDS CP008984.1 2079673 2078996 -1 - 678 YheO-like PAS domain - none -
fig|6666666.229936.peg.2058 CDS CP008984.1 2080242 2079736 -3 - 507 Arabinose efflux permease - none -
fig|6666666.229936.peg.2059 CDS CP008984.1 2080966 2080235 -1 - 732 UDP-2,3-diacylglucosamine diphosphatase (EC 3.6.1.54) KDO2-Lipid A biosynthesis;
Llipid A biosynthesis cluster
fig|6666666.229936.peg.2060 CDS CP008984.1 2081077 2081820 1 + 744 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229936.peg.2061 CDS CP008984.1 2081828 2083240 2 + 1413 Putative cell division protein precursor - none -
fig|6666666.229936.peg.2062 CDS CP008984.1 2084174 2083311 -2 - 864 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.229936.peg.2063 CDS CP008984.1 2085056 2084316 -2 - 741 Pyruvate formate-lyase activating enzyme (EC 1.97.1.4) Fermentations: Mixed acid
fig|6666666.229936.peg.2064 CDS CP008984.1 2087513 2085201 -2 - 2313 Pyruvate formate-lyase (EC 2.3.1.54) Butanol Biosynthesis;
Fermentations: Mixed acid
fig|6666666.229936.peg.2065 CDS CP008984.1 2088433 2087612 -1 - 822 Formate efflux transporter (TC 2.A.44 family) Fermentations: Mixed acid
fig|6666666.229936.peg.2066 CDS CP008984.1 2088776 2089126 2 + 351 Bis(5@1-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17) pyrimidine conversions
fig|6666666.229936.peg.2067 CDS CP008984.1 2089127 2089480 2 + 354 Predicted periplasmic lipoprotein - none -
fig|6666666.229936.peg.2068 CDS CP008984.1 2089482 2090528 3 + 1047 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) Murein Hydrolases;
Recycling of Peptidoglycan Amino Sugars
fig|6666666.229936.peg.2069 CDS CP008984.1 2090530 2091672 1 + 1143 23S rRNA (Uracil-5-) -methyltransferase rumB (EC 2.1.1.-) RNA methylation
fig|6666666.229936.peg.2070 CDS CP008984.1 2092737 2091772 -3 - 966 6-phosphofructokinase (EC 2.7.1.11) D-Tagatose and Galactitol Utilization;
Glycolysis and Gluconeogenesis
fig|6666666.229936.peg.2071 CDS CP008984.1 2093359 2092799 -1 - 561 Cobalt-zinc-cadmium resistance protein Cobalt-zinc-cadmium resistance
fig|6666666.229936.peg.2072 CDS CP008984.1 2093721 2093383 -3 - 339 Cobalt-zinc-cadmium resistance protein Cobalt-zinc-cadmium resistance
fig|6666666.229936.peg.2073 CDS CP008984.1 2094287 2093721 -2 - 567 FIG00696199: hypothetical protein - none -
fig|6666666.229936.peg.2074 CDS CP008984.1 2095068 2094289 -3 - 780 UPF0246 protein YaaA - none -
fig|6666666.229936.peg.2075 CDS CP008984.1 2095758 2095090 -3 - 669 Uracil-DNA glycosylase, family 1 DNA Repair Base Excision;
Uracil-DNA glycosylase
fig|6666666.229936.peg.2076 CDS CP008984.1 2096044 2096427 1 + 384 Pyruvate formate-lyase (EC 2.3.1.54) Butanol Biosynthesis;
Fermentations: Mixed acid
fig|6666666.229936.peg.2077 CDS CP008984.1 2096591 2098387 2 + 1797 Translation elongation factor LepA Heat shock dnaK gene cluster extended;
Translation elongation factors bacterial;
Universal GTPases
fig|6666666.229936.peg.2078 CDS CP008984.1 2098398 2099420 3 + 1023 Signal peptidase I (EC 3.4.21.89) CBSS-176299.4.peg.1292;
Signal peptidase
fig|6666666.229936.peg.2079 CDS CP008984.1 2099427 2100107 3 + 681 Ribonuclease III (EC 3.1.26.3) CBSS-176299.4.peg.1292;
RNA processing and degradation, bacterial
fig|6666666.229936.peg.2080 CDS CP008984.1 2100104 2101012 2 + 909 GTP-binding protein Era Bacterial Cell Division;
CBSS-176299.4.peg.1292;
Glycyl-tRNA synthetase containing cluster;
Universal GTPases;
tRNA modification Archaea
fig|6666666.229936.peg.2081 CDS CP008984.1 2102471 2101116 -2 - 1356 GTPase and tRNA-U34 5-formylation enzyme TrmE Cell Division Subsystem including YidCD;
RNA modification and chromosome partitioning cluster;
RNA modification cluster;
Universal GTPases;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria;
tRNAmodification position 34
fig|6666666.229936.peg.2082 CDS CP008984.1 2104188 2102599 -3 - 1590 Inner membrane protein translocase component YidC, long form CTP synthase (EC 6.3.4.2) cluster;
Cell Division Subsystem including YidCD;
RNA modification cluster
fig|6666666.229936.peg.2083 CDS CP008984.1 2104493 2104230 -2 - 264 Protein YidD Cell Division Subsystem including YidCD;
RNA modification cluster
fig|6666666.229936.peg.2084 CDS CP008984.1 2104783 2104448 -1 - 336 Ribonuclease P protein component (EC 3.1.26.5) Cell Division Subsystem including YidCD;
RNA modification cluster;
tRNA processing
fig|6666666.229936.peg.2085 CDS CP008984.1 2104963 2104829 -1 - 135 LSU ribosomal protein L34p Cell Division Subsystem including YidCD;
RNA modification cluster
fig|6666666.229936.rna.1 RNA CP008984.1 147785 147713 -2 - 73 tRNA-Ala-GGC tRNAs
fig|6666666.229936.rna.2 RNA CP008984.1 149595 149667 3 + 73 tRNA-Val-TAC - none -
fig|6666666.229936.rna.3 RNA CP008984.1 149709 149781 3 + 73 tRNA-Val-TAC - none -
fig|6666666.229936.rna.4 RNA CP008984.1 149812 149884 1 + 73 tRNA-Val-TAC - none -
fig|6666666.229936.rna.5 RNA CP008984.1 275495 275377 -2 - 119 5S RNA - none -
fig|6666666.229936.rna.6 RNA CP008984.1 278814 275757 -3 - 3058 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA - none -
fig|6666666.229936.rna.7 RNA CP008984.1 279096 279024 -3 - 73 tRNA-Glu-TTC - none -
fig|6666666.229936.rna.8 RNA CP008984.1 280731 279197 -3 - 1535 Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA - none -
fig|6666666.229936.rna.9 RNA CP008984.1 359134 359061 -1 - 74 tRNA-Arg-ACG tRNAs
fig|6666666.229936.rna.10 RNA CP008984.1 359265 359192 -3 - 74 tRNA-Arg-ACG tRNAs
fig|6666666.229936.rna.11 RNA CP008984.1 359376 359286 -3 - 91 tRNA-Ser-GCT - none -
fig|6666666.229936.rna.12 RNA CP008984.1 424892 424774 -2 - 119 5S RNA - none -
fig|6666666.229936.rna.13 RNA CP008984.1 428196 425153 -3 - 3044 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA - none -
fig|6666666.229936.rna.14 RNA CP008984.1 428551 428479 -1 - 73 tRNA-Ala-TGC - none -
fig|6666666.229936.rna.15 RNA CP008984.1 428677 428604 -1 - 74 tRNA-Ile-GAT - none -
fig|6666666.229936.rna.16 RNA CP008984.1 430293 428762 -3 - 1532 Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA - none -
fig|6666666.229936.rna.17 RNA CP008984.1 456964 457036 1 + 73 tRNA-Gly-GCC tRNAs
fig|6666666.229936.rna.18 RNA CP008984.1 457041 457124 3 + 84 tRNA-Leu-TAA - none -
fig|6666666.229936.rna.19 RNA CP008984.1 457180 457252 1 + 73 tRNA-Lys-TTT - none -
fig|6666666.229936.rna.20 RNA CP008984.1 510163 510080 -1 - 84 tRNA-Leu-CAG tRNAs
fig|6666666.229936.rna.21 RNA CP008984.1 540084 540002 -3 - 83 tRNA-Leu-GAG tRNAs
fig|6666666.229936.rna.22 RNA CP008984.1 612604 612677 1 + 74 tRNA-Met-CAT - none -
fig|6666666.229936.rna.23 RNA CP008984.1 641590 641662 1 + 73 tRNA-Thr-TGT - none -
fig|6666666.229936.rna.24 RNA CP008984.1 641696 641777 2 + 82 tRNA-Tyr-GTA - none -
fig|6666666.229936.rna.25 RNA CP008984.1 641821 641892 1 + 72 tRNA-Gly-TCC - none -
fig|6666666.229936.rna.26 RNA CP008984.1 641899 641971 1 + 73 tRNA-Thr-GGT - none -
fig|6666666.229936.rna.27 RNA CP008984.1 725230 725158 -1 - 73 tRNA-Asn-GTT - none -
fig|6666666.229936.rna.28 RNA CP008984.1 725310 725238 -3 - 73 tRNA-Phe-GAA tRNAs
fig|6666666.229936.rna.29 RNA CP008984.1 855335 856870 2 + 1536 Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA - none -
fig|6666666.229936.rna.30 RNA CP008984.1 856971 857043 3 + 73 tRNA-Glu-TTC - none -
fig|6666666.229936.rna.31 RNA CP008984.1 857253 860298 3 + 3046 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA - none -
fig|6666666.229936.rna.32 RNA CP008984.1 860559 860677 3 + 119 5S RNA - none -
fig|6666666.229936.rna.33 RNA CP008984.1 871445 871518 2 + 74 tRNA-Pro-TGG - none -
fig|6666666.229936.rna.34 RNA CP008984.1 871555 871628 1 + 74 tRNA-Arg-TCT - none -
fig|6666666.229936.rna.35 RNA CP008984.1 971982 971892 -3 - 91 tRNA-SeC(p)-TCA - none -
fig|6666666.229936.rna.36 RNA CP008984.1 1050666 1052200 3 + 1535 Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA - none -
fig|6666666.229936.rna.37 RNA CP008984.1 1052301 1052373 3 + 73 tRNA-Glu-TTC - none -
fig|6666666.229936.rna.38 RNA CP008984.1 1052583 1055629 3 + 3047 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA - none -
fig|6666666.229936.rna.39 RNA CP008984.1 1055890 1056008 1 + 119 5S RNA - none -
fig|6666666.229936.rna.40 RNA CP008984.1 1078216 1078144 -1 - 73 tRNA-Gly-GCC tRNAs
fig|6666666.229936.rna.41 RNA CP008984.1 1268629 1268702 1 + 74 tRNA-Met-CAT - none -
fig|6666666.229936.rna.42 RNA CP008984.1 1268711 1268792 2 + 82 tRNA-Leu-TAG - none -
fig|6666666.229936.rna.43 RNA CP008984.1 1268825 1268896 2 + 72 tRNA-Gln-TTG - none -
fig|6666666.229936.rna.44 RNA CP008984.1 1268937 1269008 3 + 72 tRNA-Gln-TTG - none -
fig|6666666.229936.rna.45 RNA CP008984.1 1292579 1292652 2 + 74 tRNA-Met-CAT - none -
fig|6666666.229936.rna.46 RNA CP008984.1 1546126 1546053 -1 - 74 tRNA-Val-GAC tRNAs
fig|6666666.229936.rna.47 RNA CP008984.1 1565732 1565614 -2 - 119 5S RNA - none -
fig|6666666.229936.rna.48 RNA CP008984.1 1569041 1565993 -2 - 3049 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA - none -
fig|6666666.229936.rna.49 RNA CP008984.1 1569396 1569324 -3 - 73 tRNA-Ala-TGC - none -
fig|6666666.229936.rna.50 RNA CP008984.1 1569522 1569449 -3 - 74 tRNA-Ile-GAT - none -
fig|6666666.229936.rna.51 RNA CP008984.1 1571141 1569607 -2 - 1535 Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA - none -
fig|6666666.229936.rna.52 RNA CP008984.1 1644426 1644512 3 + 87 tRNA-Ser-GGA tRNAs
fig|6666666.229936.rna.53 RNA CP008984.1 1662757 1662685 -1 - 73 tRNA-Trp-CCA tRNAs
fig|6666666.229936.rna.54 RNA CP008984.1 1662868 1662795 -1 - 74 tRNA-Asp-GTC - none -
fig|6666666.229936.rna.55 RNA CP008984.1 1663159 1663041 -1 - 119 5S RNA - none -
fig|6666666.229936.rna.56 RNA CP008984.1 1666464 1663420 -3 - 3045 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA - none -
fig|6666666.229936.rna.57 RNA CP008984.1 1666819 1666747 -1 - 73 tRNA-Ala-TGC - none -
fig|6666666.229936.rna.58 RNA CP008984.1 1666946 1666873 -2 - 74 tRNA-Ile-GAT - none -
fig|6666666.229936.rna.59 RNA CP008984.1 1668567 1667033 -3 - 1535 Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA - none -
fig|6666666.229936.rna.60 RNA CP008984.1 1668835 1668762 -1 - 74 tRNA-Pro-TGG - none -
fig|6666666.229936.rna.61 RNA CP008984.1 1668913 1668841 -1 - 73 tRNA-His-GTG - none -
fig|6666666.229936.rna.62 RNA CP008984.1 1669021 1668948 -1 - 74 tRNA-Arg-CCG tRNAs
fig|6666666.229936.rna.63 RNA CP008984.1 1718962 1719034 1 + 73 tRNA-Asn-GTT - none -
fig|6666666.229936.rna.64 RNA CP008984.1 1795165 1795247 1 + 83 tRNA-Leu-CAA tRNAs
fig|6666666.229936.rna.65 RNA CP008984.1 1934628 1934701 3 + 74 tRNA-Asp-GTC - none -
fig|6666666.229936.rna.66 RNA CP008984.1 1934727 1934800 3 + 74 tRNA-Asp-GTC - none -
fig|6666666.229936.rna.67 RNA CP008984.1 1987837 1987764 -1 - 74 tRNA-Lys-CTT - none -
fig|6666666.229936.rna.68 RNA CP008984.1 1987938 1987866 -3 - 73 tRNA-Lys-TTT - none -
fig|6666666.229936.rna.69 RNA CP008984.1 1988040 1987968 -3 - 73 tRNA-Lys-TTT - none -
fig|6666666.229936.rna.70 RNA CP008984.1 2036091 2036005 -3 - 87 tRNA-Ser-TGA - none -
fig|6666666.229936.rna.71 RNA CP008984.1 2043447 2043519 3 + 73 tRNA-Gly-GCC tRNAs
fig|6666666.229936.rna.72 RNA CP008984.1 2043531 2043601 3 + 71 tRNA-Cys-GCA tRNAs
fig|6666666.229936.rna.73 RNA CP008984.1 2052120 2052047 -3 - 74 tRNA-Met-CAT - none -