fig|6666666.229941.peg.1 CDS AP013045.1 40 192 1 + 153 ABC transporter-related permease with MCE domain - none -
fig|6666666.229941.peg.2 CDS AP013045.1 359 225 -2 - 135 hypothetical protein - none -
fig|6666666.229941.peg.3 CDS AP013045.1 613 1959 1 + 1347 Chromosomal replication initiator protein DnaA Cell Division Subsystem including YidCD;
DNA replication cluster 1
fig|6666666.229941.peg.4 CDS AP013045.1 4364 1971 -2 - 2394 putative FtsX-related transmembrane transport protein - none -
fig|6666666.229941.peg.5 CDS AP013045.1 5078 4722 -2 - 357 LSU ribosomal protein L19p Ribosome LSU bacterial
fig|6666666.229941.peg.6 CDS AP013045.1 5338 5204 -1 - 135 hypothetical protein - none -
fig|6666666.229941.peg.7 CDS AP013045.1 5337 8339 3 + 3003 Beta-N-acetylglucosaminidase - none -
fig|6666666.229941.peg.8 CDS AP013045.1 8738 9475 2 + 738 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229941.peg.9 CDS AP013045.1 10965 9496 -3 - 1470 Carotenoid cis-trans isomerase (EC 5.2.-.-) - none -
fig|6666666.229941.peg.10 CDS AP013045.1 12229 11003 -1 - 1227 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41) - none -
fig|6666666.229941.peg.11 CDS AP013045.1 14047 12332 -1 - 1716 putative acetylhydrolase - none -
fig|6666666.229941.peg.12 CDS AP013045.1 15537 14068 -3 - 1470 Internalin-like protein (LPXTG motif) Lmo0331 homolog - none -
fig|6666666.229941.peg.13 CDS AP013045.1 17577 15544 -3 - 2034 Endothelin-converting enzyme 1 precursor (EC 3.4.24.71) - none -
fig|6666666.229941.peg.14 CDS AP013045.1 18470 17835 -2 - 636 hypothetical protein - none -
fig|6666666.229941.peg.15 CDS AP013045.1 18763 19938 1 + 1176 Vitamin B12 ABC transporter, B12-binding component BtuF - none -
fig|6666666.229941.peg.16 CDS AP013045.1 19935 20972 3 + 1038 Vitamin B12 ABC transporter, permease component BtuC - none -
fig|6666666.229941.peg.17 CDS AP013045.1 20969 21982 2 + 1014 Ferric enterobactin transport ATP-binding protein FepC (TC 3.A.1.14.2) - none -
fig|6666666.229941.peg.18 CDS AP013045.1 23328 22063 -3 - 1266 Ketol-acid reductoisomerase (EC 1.1.1.86) Branched-Chain Amino Acid Biosynthesis;
Coenzyme A Biosynthesis
fig|6666666.229941.peg.19 CDS AP013045.1 23554 24000 1 + 447 hypothetical protein - none -
fig|6666666.229941.peg.20 CDS AP013045.1 24028 24816 1 + 789 Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1) De Novo Pyrimidine Synthesis
fig|6666666.229941.peg.21 CDS AP013045.1 24804 25718 3 + 915 Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1) De Novo Pyrimidine Synthesis
fig|6666666.229941.peg.22 CDS AP013045.1 25732 27993 1 + 2262 internalin-related protein - none -
fig|6666666.229941.peg.23 CDS AP013045.1 28057 29331 1 + 1275 Lysophospholipase (EC 3.1.1.5) Triacylglycerol metabolism
fig|6666666.229941.peg.24 CDS AP013045.1 29345 30037 2 + 693 Mg(2+) transport ATPase protein C Magnesium transport
fig|6666666.229941.peg.25 CDS AP013045.1 30440 30943 2 + 504 hypothetical protein - none -
fig|6666666.229941.peg.26 CDS AP013045.1 31258 32016 1 + 759 tRNA pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229941.peg.27 CDS AP013045.1 32016 32915 3 + 900 putative permease - none -
fig|6666666.229941.peg.28 CDS AP013045.1 34234 32912 -1 - 1323 Cobyrinic acid A,C-diamide synthase Cobalamin synthesis
fig|6666666.229941.peg.29 CDS AP013045.1 37268 34746 -2 - 2523 FIG01093606: hypothetical protein - none -
fig|6666666.229941.peg.30 CDS AP013045.1 39120 37318 -3 - 1803 FIG00409833: hypothetical protein - none -
fig|6666666.229941.peg.31 CDS AP013045.1 42345 39151 -3 - 3195 TonB-dependent outer membrane receptor - none -
fig|6666666.229941.peg.32 CDS AP013045.1 43272 42418 -3 - 855 hypothetical protein - none -
fig|6666666.229941.peg.33 CDS AP013045.1 45180 43300 -3 - 1881 hypothetical protein - none -
fig|6666666.229941.peg.34 CDS AP013045.1 48223 45200 -1 - 3024 SusC, outer membrane protein involved in starch binding Cellulosome
fig|6666666.229941.peg.35 CDS AP013045.1 49489 48635 -1 - 855 hypothetical protein - none -
fig|6666666.229941.peg.36 CDS AP013045.1 50038 49880 -1 - 159 hypothetical protein - none -
fig|6666666.229941.peg.37 CDS AP013045.1 49999 53016 1 + 3018 Xanthan lyase - none -
fig|6666666.229941.peg.38 CDS AP013045.1 53040 54506 3 + 1467 Putative glycosyltransferase - none -
fig|6666666.229941.peg.39 CDS AP013045.1 54503 55438 2 + 936 putative glycosyltransferase - possibly involved in cell wall localization and side chain formation of rhamnose-glucose polysaccharide Rhamnose containing glycans
fig|6666666.229941.peg.40 CDS AP013045.1 55447 56763 1 + 1317 Amidase enhancer - none -
fig|6666666.229941.peg.41 CDS AP013045.1 56780 58081 2 + 1302 AmpG permease Recycling of Peptidoglycan Amino Acids
fig|6666666.229941.peg.42 CDS AP013045.1 58089 59327 3 + 1239 alternate gene name: yzbB - none -
fig|6666666.229941.peg.43 CDS AP013045.1 59420 59572 2 + 153 hypothetical protein - none -
fig|6666666.229941.peg.44 CDS AP013045.1 59622 60794 3 + 1173 N-acetylglucosamine related transporter, NagX Chitin and N-acetylglucosamine utilization
fig|6666666.229941.peg.45 CDS AP013045.1 60791 61642 2 + 852 FIG00404118: hypothetical protein - none -
fig|6666666.229941.peg.46 CDS AP013045.1 61639 62472 1 + 834 N-acetylmuramic acid 6-phosphate etherase - none -
fig|6666666.229941.peg.47 CDS AP013045.1 63688 62456 -1 - 1233 Haloacid dehalogenase-like hydrolase - none -
fig|6666666.229941.peg.48 CDS AP013045.1 64362 63721 -3 - 642 hypothetical protein - none -
fig|6666666.229941.peg.49 CDS AP013045.1 64950 66731 3 + 1782 Peptidase, S41 family - none -
fig|6666666.229941.peg.50 CDS AP013045.1 66739 67884 1 + 1146 Lanthionine biosynthesis cyclase LanC Lanthionine Synthetases
fig|6666666.229941.peg.51 CDS AP013045.1 68048 68164 2 + 117 IS1478 transposase - none -
fig|6666666.229941.peg.52 CDS AP013045.1 68704 70056 1 + 1353 IS1478 transposase - none -
fig|6666666.229941.peg.53 CDS AP013045.1 70418 71776 2 + 1359 hypothetical protein - none -
fig|6666666.229941.peg.54 CDS AP013045.1 71773 73275 1 + 1503 Possible regulatory protein - none -
fig|6666666.229941.peg.55 CDS AP013045.1 73286 74524 2 + 1239 hypothetical protein - none -
fig|6666666.229941.peg.56 CDS AP013045.1 74594 75745 2 + 1152 hypothetical protein - none -
fig|6666666.229941.peg.57 CDS AP013045.1 76285 75941 -1 - 345 Mobile element protein - none -
fig|6666666.229941.peg.58 CDS AP013045.1 76298 76441 2 + 144 IS1478 transposase - none -
fig|6666666.229941.peg.59 CDS AP013045.1 77547 79166 3 + 1620 Radical-generating SAM-utilizing protein - none -
fig|6666666.229941.peg.60 CDS AP013045.1 79854 80480 3 + 627 Mobile element protein - none -
fig|6666666.229941.peg.61 CDS AP013045.1 80691 81020 3 + 330 Mobile element protein - none -
fig|6666666.229941.peg.62 CDS AP013045.1 81535 81669 1 + 135 ABC transporter ATP-binding protein - none -
fig|6666666.229941.peg.63 CDS AP013045.1 81720 81854 3 + 135 ABC transporter ATP-binding protein - none -
fig|6666666.229941.peg.64 CDS AP013045.1 82092 82763 3 + 672 FIG00899180: hypothetical protein - none -
fig|6666666.229941.peg.65 CDS AP013045.1 82760 84004 2 + 1245 Glycosyltransferase - none -
fig|6666666.229941.peg.66 CDS AP013045.1 85014 84886 -3 - 129 hypothetical protein - none -
fig|6666666.229941.peg.67 CDS AP013045.1 85210 85034 -1 - 177 hypothetical protein - none -
fig|6666666.229941.peg.68 CDS AP013045.1 88512 85210 -3 - 3303 Phage-related protein - none -
fig|6666666.229941.peg.69 CDS AP013045.1 88785 88612 -3 - 174 hypothetical protein - none -
fig|6666666.229941.peg.70 CDS AP013045.1 90907 89246 -1 - 1662 hypothetical protein - none -
fig|6666666.229941.peg.71 CDS AP013045.1 91767 91003 -3 - 765 hypothetical protein - none -
fig|6666666.229941.peg.72 CDS AP013045.1 95594 91764 -2 - 3831 massive surface protein MspG - none -
fig|6666666.229941.peg.73 CDS AP013045.1 95766 95581 -3 - 186 hypothetical protein - none -
fig|6666666.229941.peg.74 CDS AP013045.1 96245 95799 -2 - 447 hypothetical protein - none -
fig|6666666.229941.peg.75 CDS AP013045.1 96733 96245 -1 - 489 hypothetical protein - none -
fig|6666666.229941.peg.76 CDS AP013045.1 97702 97166 -1 - 537 hypothetical protein - none -
fig|6666666.229941.peg.77 CDS AP013045.1 98211 97714 -3 - 498 Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-) - none -
fig|6666666.229941.peg.78 CDS AP013045.1 98557 98201 -1 - 357 hypothetical protein - none -
fig|6666666.229941.peg.79 CDS AP013045.1 99097 98669 -1 - 429 hypothetical protein - none -
fig|6666666.229941.peg.80 CDS AP013045.1 100250 99249 -2 - 1002 hypothetical protein - none -
fig|6666666.229941.peg.81 CDS AP013045.1 100253 100402 2 + 150 hypothetical protein - none -
fig|6666666.229941.peg.82 CDS AP013045.1 101457 100387 -3 - 1071 hypothetical protein - none -
fig|6666666.229941.peg.83 CDS AP013045.1 101561 101692 2 + 132 hypothetical protein - none -
fig|6666666.229941.peg.84 CDS AP013045.1 101783 102217 2 + 435 hypothetical protein - none -
fig|6666666.229941.peg.85 CDS AP013045.1 102210 102455 3 + 246 hypothetical protein - none -
fig|6666666.229941.peg.86 CDS AP013045.1 102452 104083 2 + 1632 Phage protein - none -
fig|6666666.229941.peg.87 CDS AP013045.1 104153 104578 2 + 426 hypothetical protein - none -
fig|6666666.229941.peg.88 CDS AP013045.1 104686 105978 1 + 1293 hypothetical protein - none -
fig|6666666.229941.peg.89 CDS AP013045.1 106098 107279 3 + 1182 hypothetical protein - none -
fig|6666666.229941.peg.90 CDS AP013045.1 107375 107830 2 + 456 hypothetical protein - none -
fig|6666666.229941.peg.91 CDS AP013045.1 108755 108534 -2 - 222 hypothetical protein - none -
fig|6666666.229941.peg.92 CDS AP013045.1 108945 108742 -3 - 204 hypothetical protein - none -
fig|6666666.229941.peg.93 CDS AP013045.1 109445 108942 -2 - 504 hypothetical protein - none -
fig|6666666.229941.peg.94 CDS AP013045.1 110209 109826 -1 - 384 conserved phage protein - none -
fig|6666666.229941.peg.95 CDS AP013045.1 110442 110227 -3 - 216 hypothetical protein - none -
fig|6666666.229941.peg.96 CDS AP013045.1 111324 110452 -3 - 873 Phage-related protein - none -
fig|6666666.229941.peg.97 CDS AP013045.1 111550 111335 -1 - 216 hypothetical protein - none -
fig|6666666.229941.peg.98 CDS AP013045.1 112686 112039 -3 - 648 hypothetical protein - none -
fig|6666666.229941.peg.99 CDS AP013045.1 112847 112695 -2 - 153 hypothetical protein - none -
fig|6666666.229941.peg.100 CDS AP013045.1 113417 113217 -2 - 201 hypothetical protein - none -
fig|6666666.229941.peg.101 CDS AP013045.1 113788 113594 -1 - 195 hypothetical protein - none -
fig|6666666.229941.peg.102 CDS AP013045.1 114031 113804 -1 - 228 hypothetical protein - none -
fig|6666666.229941.peg.103 CDS AP013045.1 114996 114028 -3 - 969 hypothetical protein - none -
fig|6666666.229941.peg.104 CDS AP013045.1 117169 114998 -1 - 2172 hypothetical protein - none -
fig|6666666.229941.peg.105 CDS AP013045.1 117745 117347 -1 - 399 hypothetical protein - none -
fig|6666666.229941.peg.106 CDS AP013045.1 118049 117771 -2 - 279 hypothetical protein - none -
fig|6666666.229941.peg.107 CDS AP013045.1 118337 118113 -2 - 225 hypothetical protein - none -
fig|6666666.229941.peg.108 CDS AP013045.1 118570 118334 -1 - 237 hypothetical protein - none -
fig|6666666.229941.peg.109 CDS AP013045.1 118951 118760 -1 - 192 hypothetical protein - none -
fig|6666666.229941.peg.110 CDS AP013045.1 119199 119498 3 + 300 hypothetical protein - none -
fig|6666666.229941.peg.111 CDS AP013045.1 120493 120341 -1 - 153 hypothetical protein - none -
fig|6666666.229941.peg.112 CDS AP013045.1 122086 123264 1 + 1179 hypothetical protein - none -
fig|6666666.229941.peg.113 CDS AP013045.1 123338 124117 2 + 780 Transposase - none -
fig|6666666.229941.peg.114 CDS AP013045.1 124916 125497 2 + 582 hypothetical protein - none -
fig|6666666.229941.peg.115 CDS AP013045.1 125579 127075 2 + 1497 Possible regulatory protein - none -
fig|6666666.229941.peg.116 CDS AP013045.1 127033 128301 1 + 1269 hypothetical protein - none -
fig|6666666.229941.peg.117 CDS AP013045.1 128401 128538 1 + 138 hypothetical protein - none -
fig|6666666.229941.peg.118 CDS AP013045.1 128550 129200 3 + 651 ABC transporter ATP-binding protein - none -
fig|6666666.229941.peg.119 CDS AP013045.1 130411 129683 -1 - 729 Mobile element protein - none -
fig|6666666.229941.peg.120 CDS AP013045.1 130516 130644 1 + 129 hypothetical protein - none -
fig|6666666.229941.peg.121 CDS AP013045.1 130760 130927 2 + 168 hypothetical protein - none -
fig|6666666.229941.peg.122 CDS AP013045.1 131228 132448 2 + 1221 hypothetical protein - none -
fig|6666666.229941.peg.123 CDS AP013045.1 132453 133913 3 + 1461 Possible regulatory protein - none -
fig|6666666.229941.peg.124 CDS AP013045.1 133926 135101 3 + 1176 hypothetical protein - none -
fig|6666666.229941.peg.125 CDS AP013045.1 135168 136358 3 + 1191 ABC transporter ATP-binding protein - none -
fig|6666666.229941.peg.126 CDS AP013045.1 136625 137587 2 + 963 lipoprotein, putative - none -
fig|6666666.229941.peg.127 CDS AP013045.1 137634 138743 3 + 1110 lipoprotein, putative - none -
fig|6666666.229941.peg.128 CDS AP013045.1 139020 139583 3 + 564 FIG00899180: hypothetical protein - none -
fig|6666666.229941.peg.129 CDS AP013045.1 139580 140794 2 + 1215 Glycosyltransferase - none -
fig|6666666.229941.peg.130 CDS AP013045.1 140832 141761 3 + 930 hypothetical protein - none -
fig|6666666.229941.peg.131 CDS AP013045.1 141877 142044 1 + 168 hypothetical protein - none -
fig|6666666.229941.peg.132 CDS AP013045.1 142951 143067 1 + 117 hypothetical protein - none -
fig|6666666.229941.peg.133 CDS AP013045.1 144060 144191 3 + 132 hypothetical protein - none -
fig|6666666.229941.peg.134 CDS AP013045.1 144443 145651 2 + 1209 Lanthionine biosynthesis cyclase LanC Lanthionine Synthetases
fig|6666666.229941.peg.135 CDS AP013045.1 145673 147859 2 + 2187 Lanthionine biosynthesis protein LanB Lanthionine Synthetases
fig|6666666.229941.peg.136 CDS AP013045.1 147856 148728 1 + 873 Lanthionine biosynthesis protein LanB Lanthionine Synthetases
fig|6666666.229941.peg.137 CDS AP013045.1 148794 150935 3 + 2142 ABC transporter ATP-binding protein - none -
fig|6666666.229941.peg.138 CDS AP013045.1 150946 152259 1 + 1314 putative hemolysin secretion protein - none -
fig|6666666.229941.peg.139 CDS AP013045.1 152261 152962 2 + 702 hypothetical protein - none -
fig|6666666.229941.peg.140 CDS AP013045.1 152953 153717 1 + 765 hypothetical protein - none -
fig|6666666.229941.peg.141 CDS AP013045.1 153738 154277 3 + 540 hypothetical protein - none -
fig|6666666.229941.peg.142 CDS AP013045.1 154246 154935 1 + 690 hypothetical protein - none -
fig|6666666.229941.peg.143 CDS AP013045.1 154972 155652 1 + 681 putative glycosyltransferase - none -
fig|6666666.229941.peg.144 CDS AP013045.1 157169 155772 -2 - 1398 Asparaginyl-tRNA synthetase (EC 6.1.1.22) tRNA aminoacylation, Asp and Asn
fig|6666666.229941.peg.145 CDS AP013045.1 158490 157192 -3 - 1299 Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70) RNA pseudouridine syntheses
fig|6666666.229941.peg.146 CDS AP013045.1 159919 158576 -1 - 1344 Adenylosuccinate lyase (EC 4.3.2.2) De Novo Purine Biosynthesis;
Purine conversions
fig|6666666.229941.peg.147 CDS AP013045.1 161164 160184 -1 - 981 transcriptional regulatory protein - none -
fig|6666666.229941.peg.148 CDS AP013045.1 162515 161301 -2 - 1215 conserved hypothetical lipoprotein - none -
fig|6666666.229941.peg.149 CDS AP013045.1 164911 162536 -1 - 2376 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins Ton and Tol transport systems
fig|6666666.229941.peg.150 CDS AP013045.1 165112 166857 1 + 1746 Lipid A export ATP-binding/permease protein MsbA - none -
fig|6666666.229941.peg.151 CDS AP013045.1 166861 168558 1 + 1698 Lipid A export ATP-binding/permease protein MsbA - none -
fig|6666666.229941.peg.152 CDS AP013045.1 169133 170437 2 + 1305 Anaerobic C4-dicarboxylate transporter - none -
fig|6666666.229941.peg.153 CDS AP013045.1 170891 170493 -2 - 399 2-dehydropantoate 2-reductase (EC 1.1.1.169) Coenzyme A Biosynthesis
fig|6666666.229941.peg.154 CDS AP013045.1 171467 170904 -2 - 564 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Folate Biosynthesis
fig|6666666.229941.peg.155 CDS AP013045.1 171553 172524 1 + 972 Para-aminobenzoate synthase, aminase component (EC 2.6.1.85) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Folate Biosynthesis
fig|6666666.229941.peg.156 CDS AP013045.1 172552 173184 1 + 633 Aminodeoxychorismate lyase (EC 4.1.3.38) # PabAc Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Folate Biosynthesis
fig|6666666.229941.peg.157 CDS AP013045.1 173498 176209 2 + 2712 Pyruvate formate-lyase (EC 2.3.1.54) Fermentations: Mixed acid
fig|6666666.229941.peg.158 CDS AP013045.1 176256 176519 3 + 264 hypothetical protein - none -
fig|6666666.229941.peg.159 CDS AP013045.1 176637 177875 3 + 1239 FIG00523991: hypothetical protein - none -
fig|6666666.229941.peg.160 CDS AP013045.1 177977 178930 2 + 954 Pyruvate formate-lyase activating enzyme (EC 1.97.1.4) Fermentations: Mixed acid
fig|6666666.229941.peg.161 CDS AP013045.1 179150 180079 2 + 930 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) RNA pseudouridine syntheses;
Ribosome biogenesis bacterial
fig|6666666.229941.peg.162 CDS AP013045.1 180138 180521 3 + 384 Heat shock protein 60 family co-chaperone GroES GroEL GroES
fig|6666666.229941.peg.163 CDS AP013045.1 180537 181349 3 + 813 NADPH-dependent glutamate synthase small chain - none -
fig|6666666.229941.peg.164 CDS AP013045.1 181346 182845 2 + 1500 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) Ammonia assimilation;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229941.peg.165 CDS AP013045.1 182952 183386 3 + 435 Lipoprotein - none -
fig|6666666.229941.peg.166 CDS AP013045.1 183447 183599 3 + 153 hypothetical protein - none -
fig|6666666.229941.peg.167 CDS AP013045.1 183639 184265 3 + 627 COG1051: ADP-ribose pyrophosphatase - none -
fig|6666666.229941.peg.168 CDS AP013045.1 184678 184262 -1 - 417 Large-conductance mechanosensitive channel Potassium homeostasis
fig|6666666.229941.peg.169 CDS AP013045.1 186093 184747 -3 - 1347 Na+/H+ antiporter NhaA type NhaA, NhaD and Sodium-dependent phosphate transporters
fig|6666666.229941.peg.170 CDS AP013045.1 187021 186272 -1 - 750 Two-component system response regulator - none -
fig|6666666.229941.peg.171 CDS AP013045.1 188028 187009 -3 - 1020 putative two-component system sensor protein, no kinase domain - none -
fig|6666666.229941.peg.172 CDS AP013045.1 188203 189174 1 + 972 hypothetical protein - none -
fig|6666666.229941.peg.173 CDS AP013045.1 191853 189481 -3 - 2373 putative FtsX-related transmembrane transport protein - none -
fig|6666666.229941.peg.174 CDS AP013045.1 192225 192037 -3 - 189 hypothetical protein - none -
fig|6666666.229941.peg.175 CDS AP013045.1 194743 192383 -1 - 2361 putative FtsX-related transmembrane transport protein - none -
fig|6666666.229941.peg.176 CDS AP013045.1 195110 194970 -2 - 141 hypothetical protein - none -
fig|6666666.229941.peg.177 CDS AP013045.1 195340 195128 -1 - 213 hypothetical protein - none -
fig|6666666.229941.peg.178 CDS AP013045.1 196079 195405 -2 - 675 ABC transporter ATP-binding protein - none -
fig|6666666.229941.peg.179 CDS AP013045.1 198706 196376 -1 - 2331 FIG00897059: hypothetical protein - none -
fig|6666666.229941.peg.180 CDS AP013045.1 201369 198994 -3 - 2376 FIG00898232: hypothetical protein - none -
fig|6666666.229941.peg.181 CDS AP013045.1 202853 201600 -2 - 1254 ABC transporter permease - none -
fig|6666666.229941.peg.182 CDS AP013045.1 204464 203142 -2 - 1323 Type I secretion system, outer membrane component LapE - none -
fig|6666666.229941.peg.183 CDS AP013045.1 204806 208285 2 + 3480 hypothetical protein - none -
fig|6666666.229941.peg.184 CDS AP013045.1 208282 209640 1 + 1359 Two-component system response regulator - none -
fig|6666666.229941.peg.185 CDS AP013045.1 209646 210959 3 + 1314 Sensor histidine kinase - none -
fig|6666666.229941.peg.186 CDS AP013045.1 211010 211504 2 + 495 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) DNA repair, bacterial
fig|6666666.229941.peg.187 CDS AP013045.1 212026 212283 1 + 258 hypothetical protein - none -
fig|6666666.229941.peg.188 CDS AP013045.1 212521 212922 1 + 402 hypothetical protein - none -
fig|6666666.229941.peg.189 CDS AP013045.1 212951 215341 2 + 2391 putative TonB-dependent receptor - none -
fig|6666666.229941.peg.190 CDS AP013045.1 215383 215994 1 + 612 membrane protein, putative - none -
fig|6666666.229941.peg.191 CDS AP013045.1 215979 216266 3 + 288 Transcriptional regulators, marR/emrR family - none -
fig|6666666.229941.peg.192 CDS AP013045.1 217717 216368 -1 - 1350 Alpha-amylase (EC 3.2.1.1) Maltose and Maltodextrin Utilization
fig|6666666.229941.peg.193 CDS AP013045.1 218972 217704 -2 - 1269 Glycosyltransferase (EC 2.4.1.-) - none -
fig|6666666.229941.peg.194 CDS AP013045.1 220924 218990 -1 - 1935 Putative glycogen debranching enzyme, archaeal type, TIGR01561 Glycogen metabolism
fig|6666666.229941.peg.195 CDS AP013045.1 221131 220958 -1 - 174 hypothetical protein - none -
fig|6666666.229941.peg.196 CDS AP013045.1 223060 221387 -1 - 1674 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases - none -
fig|6666666.229941.peg.197 CDS AP013045.1 223657 223103 -1 - 555 Transcriptional regulator - none -
fig|6666666.229941.peg.198 CDS AP013045.1 223776 223657 -3 - 120 hypothetical protein - none -
fig|6666666.229941.peg.199 CDS AP013045.1 224362 223787 -1 - 576 hypothetical protein - none -
fig|6666666.229941.peg.200 CDS AP013045.1 225043 224459 -1 - 585 Dephospho-CoA kinase (EC 2.7.1.24) Coenzyme A Biosynthesis
fig|6666666.229941.peg.201 CDS AP013045.1 226044 225040 -3 - 1005 hypothetical protein - none -
fig|6666666.229941.peg.202 CDS AP013045.1 226393 226055 -1 - 339 Preprotein translocase subunit YajC (TC 3.A.5.1.1) CBSS-211586.1.peg.2832
fig|6666666.229941.peg.203 CDS AP013045.1 227386 226475 -1 - 912 Transcription termination protein NusB Transcription factors bacterial
fig|6666666.229941.peg.204 CDS AP013045.1 228595 227555 -1 - 1041 L-asparaginase (EC 3.5.1.1) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229941.peg.205 CDS AP013045.1 228946 229704 1 + 759 unknown - none -
fig|6666666.229941.peg.206 CDS AP013045.1 230747 229872 -2 - 876 Beta-glucanase precursor (EC 3.2.1.73) - none -
fig|6666666.229941.peg.207 CDS AP013045.1 232369 230831 -1 - 1539 hypothetical protein - none -
fig|6666666.229941.peg.208 CDS AP013045.1 235533 232378 -3 - 3156 Putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.229941.peg.209 CDS AP013045.1 235784 235590 -2 - 195 TonB family protein / TonB-dependent receptor Ton and Tol transport systems
fig|6666666.229941.peg.210 CDS AP013045.1 236888 235911 -2 - 978 putative anti-sigma factor - none -
fig|6666666.229941.peg.211 CDS AP013045.1 237536 236955 -2 - 582 RNA polymerase ECF-type sigma factor - none -
fig|6666666.229941.peg.212 CDS AP013045.1 238396 237683 -1 - 714 hypothetical protein - none -
fig|6666666.229941.peg.213 CDS AP013045.1 238697 239065 2 + 369 hypothetical protein - none -
fig|6666666.229941.peg.214 CDS AP013045.1 239668 242547 1 + 2880 FIG00897767: hypothetical protein - none -
fig|6666666.229941.peg.215 CDS AP013045.1 242673 243743 3 + 1071 Phosphoserine aminotransferase (EC 2.6.1.52) Glycine and Serine Utilization;
Pyridoxin (Vitamin B6) Biosynthesis;
Serine Biosynthesis
fig|6666666.229941.peg.216 CDS AP013045.1 243771 244145 3 + 375 Conserved protein - none -
fig|6666666.229941.peg.217 CDS AP013045.1 244172 245092 2 + 921 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) Glycine and Serine Utilization;
Pyridoxin (Vitamin B6) Biosynthesis;
Serine Biosynthesis
fig|6666666.229941.peg.218 CDS AP013045.1 245186 246430 2 + 1245 FIG008208: hypothetical protein - none -
fig|6666666.229941.peg.219 CDS AP013045.1 246513 247112 3 + 600 Haloacid dehalogenase-like hydrolase - none -
fig|6666666.229941.peg.220 CDS AP013045.1 247250 247798 2 + 549 sigma factor - none -
fig|6666666.229941.peg.221 CDS AP013045.1 247858 248079 1 + 222 hypothetical protein - none -
fig|6666666.229941.peg.222 CDS AP013045.1 248175 248453 3 + 279 hypothetical protein - none -
fig|6666666.229941.peg.223 CDS AP013045.1 248482 249177 1 + 696 secreted protein - none -
fig|6666666.229941.peg.224 CDS AP013045.1 249144 249701 3 + 558 hypothetical protein - none -
fig|6666666.229941.peg.225 CDS AP013045.1 250278 251393 3 + 1116 FIG00471280: hypothetical protein - none -
fig|6666666.229941.peg.226 CDS AP013045.1 251413 251844 1 + 432 hypothetical protein - none -
fig|6666666.229941.peg.227 CDS AP013045.1 251847 252410 3 + 564 DUF324 domain-containing protein CRISPR-associated cluster
fig|6666666.229941.peg.228 CDS AP013045.1 252407 253897 2 + 1491 FIG00470522: hypothetical protein - none -
fig|6666666.229941.peg.229 CDS AP013045.1 253976 253848 -2 - 129 hypothetical protein - none -
fig|6666666.229941.peg.230 CDS AP013045.1 253894 255327 1 + 1434 DUF324 domain-containing protein CRISPR-associated cluster
fig|6666666.229941.peg.231 CDS AP013045.1 255327 255704 3 + 378 hypothetical protein - none -
fig|6666666.229941.peg.232 CDS AP013045.1 255717 257738 3 + 2022 DUF324 domain-containing protein CRISPR-associated cluster
fig|6666666.229941.peg.233 CDS AP013045.1 257913 258278 3 + 366 hypothetical protein - none -
fig|6666666.229941.peg.234 CDS AP013045.1 258865 258740 -1 - 126 hypothetical protein - none -
fig|6666666.229941.peg.235 CDS AP013045.1 259196 259026 -2 - 171 hypothetical protein - none -
fig|6666666.229941.peg.236 CDS AP013045.1 259359 261458 3 + 2100 DNA ligase (EC 6.5.1.2) DNA Repair Base Excision
fig|6666666.229941.peg.237 CDS AP013045.1 261455 261985 2 + 531 hypothetical protein - none -
fig|6666666.229941.peg.238 CDS AP013045.1 262009 262902 1 + 894 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229941.peg.239 CDS AP013045.1 263805 262996 -3 - 810 Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) - none -
fig|6666666.229941.peg.240 CDS AP013045.1 264839 263829 -2 - 1011 L-rhamnose-proton symporter - none -
fig|6666666.229941.peg.241 CDS AP013045.1 266150 264864 -2 - 1287 L-rhamnose isomerase (EC 5.3.1.14) - none -
fig|6666666.229941.peg.242 CDS AP013045.1 267643 266162 -1 - 1482 Rhamnulokinase (EC 2.7.1.5) - none -
fig|6666666.229941.peg.243 CDS AP013045.1 268264 267701 -1 - 564 RNA polymerase ECF-type sigma factor - none -
fig|6666666.229941.peg.244 CDS AP013045.1 268781 268425 -2 - 357 hypothetical protein - none -
fig|6666666.229941.peg.245 CDS AP013045.1 270316 268832 -1 - 1485 Prolyl-tRNA synthetase (EC 6.1.1.15), archaeal/eukaryal type tRNA aminoacylation, Pro
fig|6666666.229941.peg.246 CDS AP013045.1 271159 270338 -1 - 822 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) Coenzyme A Biosynthesis;
Coenzyme A Biosynthesis cluster
fig|6666666.229941.peg.247 CDS AP013045.1 272636 271362 -2 - 1275 Peptidase, S41 family - none -
fig|6666666.229941.peg.248 CDS AP013045.1 272742 272861 3 + 120 hypothetical protein - none -
fig|6666666.229941.peg.249 CDS AP013045.1 272836 273510 1 + 675 LemA protein CBSS-393011.11.peg.386
fig|6666666.229941.peg.250 CDS AP013045.1 273566 274477 2 + 912 Heat shock protein HtpX (EC 3.4.24.-) CBSS-393011.11.peg.386
fig|6666666.229941.peg.251 CDS AP013045.1 274512 274976 3 + 465 Alanyl-tRNA synthetase domain protein tRNA aminoacylation, Ala
fig|6666666.229941.peg.252 CDS AP013045.1 275142 276404 3 + 1263 Phosphoglycerate kinase (EC 2.7.2.3) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis
fig|6666666.229941.peg.253 CDS AP013045.1 276449 277849 2 + 1401 Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps Multidrug Resistance Efflux Pumps;
Riboflavin, FMN and FAD metabolism in plants
fig|6666666.229941.peg.254 CDS AP013045.1 278468 277866 -2 - 603 Riboflavin synthase eubacterial/eukaryotic (EC 2.5.1.9) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
riboflavin to FAD
fig|6666666.229941.peg.255 CDS AP013045.1 280129 278483 -1 - 1647 Pyrophosphate-dependent fructose 6-phosphate-1-kinase (EC 2.7.1.90) Glycolysis and Gluconeogenesis
fig|6666666.229941.peg.256 CDS AP013045.1 280368 280748 3 + 381 Transcriptional repressor, BlaI/MecI family - none -
fig|6666666.229941.peg.257 CDS AP013045.1 280755 282194 3 + 1440 Regulatory sensor-transducer, BlaR1/MecR1 family / TonB-dependent receptor Ton and Tol transport systems
fig|6666666.229941.peg.258 CDS AP013045.1 282203 282358 2 + 156 hypothetical protein - none -
fig|6666666.229941.peg.259 CDS AP013045.1 282441 282638 3 + 198 hypothetical protein - none -
fig|6666666.229941.peg.260 CDS AP013045.1 284745 289247 3 + 4503 hypothetical protein - none -
fig|6666666.229941.peg.261 CDS AP013045.1 290593 289442 -1 - 1152 Chaperone protein DnaJ GroEL GroES;
Heat shock dnaK gene cluster extended;
Protein chaperones
fig|6666666.229941.peg.262 CDS AP013045.1 291232 290621 -1 - 612 Heat shock protein GrpE GroEL GroES;
Heat shock dnaK gene cluster extended;
Protein chaperones
fig|6666666.229941.peg.263 CDS AP013045.1 291453 292874 3 + 1422 PDZ domain protein - none -
fig|6666666.229941.peg.264 CDS AP013045.1 292898 295378 2 + 2481 Recombination inhibitory protein MutS2 DNA repair, bacterial MutL-MutS system
fig|6666666.229941.peg.265 CDS AP013045.1 296449 295472 -1 - 978 dihydroorotate dehydrogenase - none -
fig|6666666.229941.peg.266 CDS AP013045.1 297200 296535 -2 - 666 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC - none -
fig|6666666.229941.peg.267 CDS AP013045.1 297670 297197 -1 - 474 FIG00896819: hypothetical protein - none -
fig|6666666.229941.peg.268 CDS AP013045.1 298215 297679 -3 - 537 Ribosomal-protein-L7p-serine acetyltransferase Ribosome biogenesis bacterial
fig|6666666.229941.peg.269 CDS AP013045.1 299188 300117 1 + 930 hypothetical protein - none -
fig|6666666.229941.peg.270 CDS AP013045.1 303944 300597 -2 - 3348 Transcription-repair coupling factor Cell division-ribosomal stress proteins cluster;
Transcription factors bacterial
fig|6666666.229941.peg.271 CDS AP013045.1 305734 304028 -1 - 1707 Acyl-CoA dehydrogenase (EC 1.3.8.7) - none -
fig|6666666.229941.peg.272 CDS AP013045.1 306762 305743 -3 - 1020 Electron transfer flavoprotein, alpha subunit - none -
fig|6666666.229941.peg.273 CDS AP013045.1 307911 307030 -3 - 882 Electron transfer flavoprotein, beta subunit - none -
fig|6666666.229941.peg.274 CDS AP013045.1 308168 308040 -2 - 129 hypothetical protein - none -
fig|6666666.229941.peg.275 CDS AP013045.1 309142 308336 -1 - 807 2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase (EC 2.5.1.55) A Gammaproteobacteria Cluster Relating to Translation
fig|6666666.229941.peg.276 CDS AP013045.1 309957 309169 -3 - 789 tRNA dimethylallyltransferase (EC 2.5.1.75) tRNA modification Bacteria;
tRNA processing
fig|6666666.229941.peg.277 CDS AP013045.1 310329 310213 -3 - 117 hypothetical protein - none -
fig|6666666.229941.peg.278 CDS AP013045.1 311680 310670 -1 - 1011 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis;
Pyridoxin (Vitamin B6) Biosynthesis;
Redox-dependent regulation of nucleus processes
fig|6666666.229941.peg.279 CDS AP013045.1 311967 311821 -3 - 147 hypothetical protein - none -
fig|6666666.229941.peg.280 CDS AP013045.1 312314 311931 -2 - 384 hypothetical protein - none -
fig|6666666.229941.peg.281 CDS AP013045.1 312678 312277 -3 - 402 hypothetical protein - none -
fig|6666666.229941.peg.282 CDS AP013045.1 312881 312693 -2 - 189 hypothetical protein - none -
fig|6666666.229941.peg.283 CDS AP013045.1 313888 313034 -1 - 855 Ribosomal protein L11 methyltransferase (EC 2.1.1.-) Heat shock dnaK gene cluster extended;
Ribosome biogenesis bacterial
fig|6666666.229941.peg.284 CDS AP013045.1 314342 314485 2 + 144 hypothetical protein - none -
fig|6666666.229941.peg.285 CDS AP013045.1 315307 314696 -1 - 612 DNA-binding response regulator, LuxR family - none -
fig|6666666.229941.peg.286 CDS AP013045.1 317214 315304 -3 - 1911 periplasmic sensor signal transduction histidine kinase - none -
fig|6666666.229941.peg.287 CDS AP013045.1 318585 317317 -3 - 1269 ATPase - none -
fig|6666666.229941.peg.288 CDS AP013045.1 319866 318592 -3 - 1275 FIG074102: hypothetical protein - none -
fig|6666666.229941.peg.289 CDS AP013045.1 319891 321003 1 + 1113 Putative cell wall-binding domain - none -
fig|6666666.229941.peg.290 CDS AP013045.1 321180 321653 3 + 474 DNA-binding protein, histone-like family - none -
fig|6666666.229941.peg.291 CDS AP013045.1 321854 321735 -2 - 120 hypothetical protein - none -
fig|6666666.229941.peg.292 CDS AP013045.1 321853 322194 1 + 342 hypothetical protein - none -
fig|6666666.229941.peg.293 CDS AP013045.1 322650 322796 3 + 147 hypothetical protein - none -
fig|6666666.229941.peg.294 CDS AP013045.1 322855 323865 1 + 1011 Integral membrane protein - none -
fig|6666666.229941.peg.295 CDS AP013045.1 323871 324737 3 + 867 hypothetical protein - none -
fig|6666666.229941.peg.296 CDS AP013045.1 324795 326024 3 + 1230 surface proteins containing Ig-like domains-like - none -
fig|6666666.229941.peg.297 CDS AP013045.1 326055 326738 3 + 684 hypothetical protein - none -
fig|6666666.229941.peg.298 CDS AP013045.1 326900 327082 2 + 183 hypothetical protein - none -
fig|6666666.229941.peg.299 CDS AP013045.1 327183 327431 3 + 249 tetracycline resistance element mobilization regulatory protein rteC - none -
fig|6666666.229941.peg.300 CDS AP013045.1 328290 327538 -3 - 753 hypothetical protein - none -
fig|6666666.229941.peg.301 CDS AP013045.1 329270 328677 -2 - 594 hypothetical protein - none -
fig|6666666.229941.peg.302 CDS AP013045.1 330404 329292 -2 - 1113 UDP-glucose 4-epimerase (EC 5.1.3.2) Lactose and Galactose Uptake and Utilization;
Rhamnose containing glycans
fig|6666666.229941.peg.303 CDS AP013045.1 330654 330499 -3 - 156 hypothetical protein - none -
fig|6666666.229941.peg.304 CDS AP013045.1 330868 330680 -1 - 189 LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-independent Ribosome LSU bacterial;
Ribosome LSU bacterial
fig|6666666.229941.peg.305 CDS AP013045.1 331132 330893 -1 - 240 LSU ribosomal protein L28p Ribosome LSU bacterial
fig|6666666.229941.peg.306 CDS AP013045.1 331755 331877 3 + 123 hypothetical protein - none -
fig|6666666.229941.peg.307 CDS AP013045.1 332771 331992 -2 - 780 lipase/acylhydrolase family protein - none -
fig|6666666.229941.peg.308 CDS AP013045.1 333328 332831 -1 - 498 FIG042921: similarity to aminoacyl-tRNA editing enzymes YbaK, ProX - none -
fig|6666666.229941.peg.309 CDS AP013045.1 334160 333348 -2 - 813 Purine nucleoside phosphorylase (EC 2.4.2.1) Adenosyl nucleosidases;
Deoxyribose and Deoxynucleoside Catabolism;
Purine conversions
fig|6666666.229941.peg.310 CDS AP013045.1 334882 336534 1 + 1653 FIG00404818: hypothetical protein - none -
fig|6666666.229941.peg.311 CDS AP013045.1 336798 339962 3 + 3165 TonB family protein / TonB-dependent receptor Ton and Tol transport systems
fig|6666666.229941.peg.312 CDS AP013045.1 340022 341497 2 + 1476 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.229941.peg.313 CDS AP013045.1 341636 344662 2 + 3027 Beta-galactosidase (EC 3.2.1.23) Galactosylceramide and Sulfatide metabolism;
Lactose and Galactose Uptake and Utilization;
Lactose utilization
fig|6666666.229941.peg.314 CDS AP013045.1 344700 344951 3 + 252 hypothetical protein - none -
fig|6666666.229941.peg.315 CDS AP013045.1 345038 345604 2 + 567 putative surface protein - none -
fig|6666666.229941.peg.316 CDS AP013045.1 345731 346570 2 + 840 metallo-beta-lactamase family protein - none -
fig|6666666.229941.peg.317 CDS AP013045.1 346953 346573 -3 - 381 COGs COG3339 - none -
fig|6666666.229941.peg.318 CDS AP013045.1 347114 348907 2 + 1794 L-fucose isomerase (EC 5.3.1.25) - none -
fig|6666666.229941.peg.319 CDS AP013045.1 348904 350232 1 + 1329 Fucose permease - none -
fig|6666666.229941.peg.320 CDS AP013045.1 350556 351695 3 + 1140 FMN adenylyltransferase, type 3 archaeal (EC 2.7.7.2) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants
fig|6666666.229941.peg.321 CDS AP013045.1 351700 352590 1 + 891 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229941.peg.322 CDS AP013045.1 352810 353979 1 + 1170 outer membrane protein OmpA - none -
fig|6666666.229941.peg.323 CDS AP013045.1 354079 356526 1 + 2448 Putative cytochrome C-type biogenesis protein Biogenesis of c-type cytochromes
fig|6666666.229941.peg.324 CDS AP013045.1 356516 359056 2 + 2541 ApeH acylamino-acid-releasing enzyme (EC 3.4.19.1) - none -
fig|6666666.229941.peg.325 CDS AP013045.1 359115 359465 3 + 351 hypothetical protein - none -
fig|6666666.229941.peg.326 CDS AP013045.1 359458 361719 1 + 2262 Alpha-1,2-mannosidase Mannose Metabolism
fig|6666666.229941.peg.327 CDS AP013045.1 361745 362617 2 + 873 FIG00898779: hypothetical protein - none -
fig|6666666.229941.peg.328 CDS AP013045.1 363951 362629 -3 - 1323 BexA, membrane protein - none -
fig|6666666.229941.peg.329 CDS AP013045.1 364374 364024 -3 - 351 Aspartate 1-decarboxylase (EC 4.1.1.11) Coenzyme A Biosynthesis;
Coenzyme A Biosynthesis cluster;
Folate biosynthesis cluster
fig|6666666.229941.peg.330 CDS AP013045.1 365196 364396 -3 - 801 Pantoate--beta-alanine ligase (EC 6.3.2.1) Coenzyme A Biosynthesis;
Coenzyme A Biosynthesis cluster;
Folate biosynthesis cluster
fig|6666666.229941.peg.331 CDS AP013045.1 365370 366242 3 + 873 Similar to glycogen synthase (EC 2.4.1.21) - none -
fig|6666666.229941.peg.332 CDS AP013045.1 366244 367662 1 + 1419 hypothetical protein - none -
fig|6666666.229941.peg.333 CDS AP013045.1 368369 368974 2 + 606 hypothetical protein - none -
fig|6666666.229941.peg.334 CDS AP013045.1 369000 369257 3 + 258 hypothetical protein - none -
fig|6666666.229941.peg.335 CDS AP013045.1 369294 371276 3 + 1983 hypothetical protein - none -
fig|6666666.229941.peg.336 CDS AP013045.1 371340 371882 3 + 543 hypothetical protein - none -
fig|6666666.229941.peg.337 CDS AP013045.1 371915 372778 2 + 864 hypothetical protein - none -
fig|6666666.229941.peg.338 CDS AP013045.1 372874 373428 1 + 555 Putative DNA-binding protein in cluster with Type I restriction-modification system - none -
fig|6666666.229941.peg.339 CDS AP013045.1 373459 374379 1 + 921 putative transcriptional regulator - none -
fig|6666666.229941.peg.340 CDS AP013045.1 374588 375793 2 + 1206 FIG00936974: hypothetical protein - none -
fig|6666666.229941.peg.341 CDS AP013045.1 375820 376605 1 + 786 putative polysaccharide deacetylase - none -
fig|6666666.229941.peg.342 CDS AP013045.1 376728 377087 3 + 360 Transcriptional regulator, MecI family - none -
fig|6666666.229941.peg.343 CDS AP013045.1 377094 378959 3 + 1866 Ferric siderophore transport system, periplasmic binding protein TonB Hemin transport system;
Ton and Tol transport systems
fig|6666666.229941.peg.344 CDS AP013045.1 378995 380386 2 + 1392 DNA methylase N-4/N-6 domain protein - none -
fig|6666666.229941.peg.345 CDS AP013045.1 380681 381019 2 + 339 hypothetical protein - none -
fig|6666666.229941.peg.346 CDS AP013045.1 381082 381414 1 + 333 hypothetical protein - none -
fig|6666666.229941.peg.347 CDS AP013045.1 381729 382304 3 + 576 hypothetical protein - none -
fig|6666666.229941.peg.348 CDS AP013045.1 386131 385991 -1 - 141 hypothetical protein - none -
fig|6666666.229941.peg.349 CDS AP013045.1 388127 387963 -2 - 165 hypothetical protein - none -
fig|6666666.229941.peg.350 CDS AP013045.1 388214 388339 2 + 126 hypothetical protein - none -
fig|6666666.229941.peg.351 CDS AP013045.1 388336 389208 1 + 873 Protein YicC CBSS-323097.3.peg.2594
fig|6666666.229941.peg.352 CDS AP013045.1 389208 389774 3 + 567 Guanylate kinase (EC 2.7.4.8) CBSS-323097.3.peg.2594;
Purine conversions
fig|6666666.229941.peg.353 CDS AP013045.1 389814 390419 3 + 606 Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) NAD and NADP cofactor biosynthesis global
fig|6666666.229941.peg.354 CDS AP013045.1 390500 390943 2 + 444 dCMP deaminase (EC 3.5.4.12) - none -
fig|6666666.229941.peg.355 CDS AP013045.1 390994 392583 1 + 1590 Carboxy-terminal processing protease - none -
fig|6666666.229941.peg.356 CDS AP013045.1 392580 393137 3 + 558 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) 5-FCL-like protein;
Folate Biosynthesis;
One-carbon metabolism by tetrahydropterines
fig|6666666.229941.peg.357 CDS AP013045.1 393439 393146 -1 - 294 Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives DNA replication cluster 1
fig|6666666.229941.peg.358 CDS AP013045.1 394539 393436 -3 - 1104 DNA recombination and repair protein RecF CBSS-226186.1.peg.4253;
Cell Division Subsystem including YidCD;
DNA repair, bacterial RecFOR pathway;
DNA replication cluster 1
fig|6666666.229941.peg.359 CDS AP013045.1 394689 395381 3 + 693 FIG170660: TPR domain protein CBSS-226186.1.peg.4253
fig|6666666.229941.peg.360 CDS AP013045.1 395384 395887 2 + 504 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants
fig|6666666.229941.peg.361 CDS AP013045.1 396341 396454 2 + 114 hypothetical protein - none -
fig|6666666.229941.peg.362 CDS AP013045.1 397355 398650 2 + 1296 HIPA PROTEIN - none -
fig|6666666.229941.peg.363 CDS AP013045.1 398871 398665 -3 - 207 IS1478 transposase - none -
fig|6666666.229941.peg.364 CDS AP013045.1 400226 399114 -2 - 1113 FIG00898796: hypothetical protein - none -
fig|6666666.229941.peg.365 CDS AP013045.1 401205 400243 -3 - 963 Peptide chain release factor 2; programmed frameshift-containing Programmed frameshift;
Programmed frameshift;
Translation termination factors bacterial
fig|6666666.229941.peg.366 CDS AP013045.1 403166 401454 -2 - 1713 Sulfate permease - none -
fig|6666666.229941.peg.367 CDS AP013045.1 405204 403387 -3 - 1818 Neuraminidase NanP Galactosylceramide and Sulfatide metabolism
fig|6666666.229941.peg.368 CDS AP013045.1 406796 405282 -2 - 1515 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.229941.peg.369 CDS AP013045.1 410188 406811 -1 - 3378 SusC, outer membrane protein involved in starch binding Cellulosome
fig|6666666.229941.peg.370 CDS AP013045.1 411304 410309 -1 - 996 putative anti-sigma factor - none -
fig|6666666.229941.peg.371 CDS AP013045.1 411966 411379 -3 - 588 RNA polymerase ECF-type sigma factor - none -
fig|6666666.229941.peg.372 CDS AP013045.1 413569 412001 -1 - 1569 L-aspartate oxidase (EC 1.4.3.16) Mycobacterium virulence operon possibly involved in quinolinate biosynthesis;
NAD and NADP cofactor biosynthesis global
fig|6666666.229941.peg.373 CDS AP013045.1 413745 413611 -3 - 135 hypothetical protein - none -
fig|6666666.229941.peg.374 CDS AP013045.1 413764 414420 1 + 657 hypothetical protein - none -
fig|6666666.229941.peg.375 CDS AP013045.1 414411 415187 3 + 777 uroporphyrinogen-III synthase HemD, putative - none -
fig|6666666.229941.peg.376 CDS AP013045.1 415174 415587 1 + 414 Ribonuclease P protein component (EC 3.1.26.5) Cell Division Subsystem including YidCD;
RNA modification cluster;
tRNA processing
fig|6666666.229941.peg.377 CDS AP013045.1 415569 415793 3 + 225 Protein YidD Cell Division Subsystem including YidCD;
RNA modification cluster
fig|6666666.229941.peg.378 CDS AP013045.1 415813 416451 1 + 639 Putative deoxyribonuclease YjjV Deoxyribose and Deoxynucleoside Catabolism;
YcfH
fig|6666666.229941.peg.379 CDS AP013045.1 416597 417925 2 + 1329 hypothetical protein - none -
fig|6666666.229941.peg.380 CDS AP013045.1 417942 418967 3 + 1026 FIG00939856: hypothetical protein - none -
fig|6666666.229941.peg.381 CDS AP013045.1 418988 419245 2 + 258 hypothetical protein - none -
fig|6666666.229941.peg.382 CDS AP013045.1 419710 420288 1 + 579 hypothetical protein - none -
fig|6666666.229941.peg.383 CDS AP013045.1 420361 420483 1 + 123 hypothetical protein - none -
fig|6666666.229941.peg.384 CDS AP013045.1 420689 420844 2 + 156 hypothetical protein - none -
fig|6666666.229941.peg.385 CDS AP013045.1 420986 421954 2 + 969 Cell surface protein - none -
fig|6666666.229941.peg.386 CDS AP013045.1 422374 422529 1 + 156 hypothetical protein - none -
fig|6666666.229941.peg.387 CDS AP013045.1 423382 424848 1 + 1467 Putative phage protein - none -
fig|6666666.229941.peg.388 CDS AP013045.1 425124 426827 3 + 1704 hypothetical protein - none -
fig|6666666.229941.peg.389 CDS AP013045.1 426904 436203 1 + 9300 hypothetical protein - none -
fig|6666666.229941.peg.390 CDS AP013045.1 436639 437355 1 + 717 Endo/excinuclease amino terminal domain protein - none -
fig|6666666.229941.peg.391 CDS AP013045.1 437845 439839 1 + 1995 Large repetitive protein - none -
fig|6666666.229941.peg.392 CDS AP013045.1 440764 440591 -1 - 174 hypothetical protein - none -
fig|6666666.229941.peg.393 CDS AP013045.1 441747 441106 -3 - 642 hypothetical protein - none -
fig|6666666.229941.peg.394 CDS AP013045.1 445117 441956 -1 - 3162 Two-component sensor histidine kinase - none -
fig|6666666.229941.peg.395 CDS AP013045.1 445374 445219 -3 - 156 hypothetical protein - none -
fig|6666666.229941.peg.396 CDS AP013045.1 445382 445972 2 + 591 V-type ATP synthase subunit E (EC 3.6.3.14) V-Type ATP synthase
fig|6666666.229941.peg.397 CDS AP013045.1 445972 446841 1 + 870 V-type ATP synthase subunit C (EC 3.6.3.14) V-Type ATP synthase
fig|6666666.229941.peg.398 CDS AP013045.1 446845 448602 1 + 1758 V-type ATP synthase subunit A (EC 3.6.3.14) V-Type ATP synthase
fig|6666666.229941.peg.399 CDS AP013045.1 448609 449934 1 + 1326 V-type ATP synthase subunit B (EC 3.6.3.14) V-Type ATP synthase
fig|6666666.229941.peg.400 CDS AP013045.1 449966 450586 2 + 621 V-type ATP synthase subunit D (EC 3.6.3.14) V-Type ATP synthase
fig|6666666.229941.peg.401 CDS AP013045.1 450583 452454 1 + 1872 V-type ATP synthase subunit I (EC 3.6.3.14) V-Type ATP synthase
fig|6666666.229941.peg.402 CDS AP013045.1 452549 452968 2 + 420 V-type ATP synthase subunit K (EC 3.6.3.14) V-Type ATP synthase
fig|6666666.229941.peg.403 CDS AP013045.1 453277 454086 1 + 810 Polysaccharide export outer membrane protein - none -
fig|6666666.229941.peg.404 CDS AP013045.1 454095 455696 3 + 1602 Tyrosine-protein kinase Wzc (EC 2.7.10.2) - none -
fig|6666666.229941.peg.405 CDS AP013045.1 455786 456535 2 + 750 Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) - none -
fig|6666666.229941.peg.406 CDS AP013045.1 456532 457938 1 + 1407 Polysaccharide biosynthesis protein CpsM(V) - none -
fig|6666666.229941.peg.407 CDS AP013045.1 457949 458728 2 + 780 Lipopolysaccharide cholinephosphotransferase LicD1 (EC 2.7.8.-) - none -
fig|6666666.229941.peg.408 CDS AP013045.1 458809 459933 1 + 1125 hypothetical protein - none -
fig|6666666.229941.peg.409 CDS AP013045.1 461040 459922 -3 - 1119 Alpha-D-GlcNAc alpha-1,2-L-rhamnosyltransferase (EC 2.4.1.-) Rhamnose containing glycans
fig|6666666.229941.peg.410 CDS AP013045.1 462038 461037 -2 - 1002 Radical SAM domain heme biosynthesis protein - none -
fig|6666666.229941.peg.411 CDS AP013045.1 463173 462088 -3 - 1086 Putative glycosyltransferase protein - none -
fig|6666666.229941.peg.412 CDS AP013045.1 464515 463250 -1 - 1266 Oligosaccharide repeat unit polymerase Wzy - none -
fig|6666666.229941.peg.413 CDS AP013045.1 465780 464527 -3 - 1254 Oligosaccharide repeat unit polymerase Wzy - none -
fig|6666666.229941.peg.414 CDS AP013045.1 465823 465969 1 + 147 hypothetical protein - none -
fig|6666666.229941.peg.415 CDS AP013045.1 465986 467299 2 + 1314 UDP-glucose dehydrogenase (EC 1.1.1.22) - none -
fig|6666666.229941.peg.416 CDS AP013045.1 467315 468046 2 + 732 Cytoplasmic copper homeostasis protein cutC - none -
fig|6666666.229941.peg.417 CDS AP013045.1 468073 468261 1 + 189 hypothetical protein - none -
fig|6666666.229941.peg.418 CDS AP013045.1 469995 468325 -3 - 1671 hypothetical protein - none -
fig|6666666.229941.peg.419 CDS AP013045.1 470025 472253 3 + 2229 Excinuclease ABC subunit B DNA repair, UvrABC system
fig|6666666.229941.peg.420 CDS AP013045.1 472250 473101 2 + 852 probable lipoprotein YPO2292 - none -
fig|6666666.229941.peg.421 CDS AP013045.1 473184 474593 3 + 1410 GTPase and tRNA-U34 5-formylation enzyme TrmE Cell Division Subsystem including YidCD;
RNA modification and chromosome partitioning cluster;
RNA modification cluster;
Universal GTPases;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.229941.peg.422 CDS AP013045.1 475644 474697 -3 - 948 HipA protein Persister Cells
fig|6666666.229941.peg.423 CDS AP013045.1 476139 475954 -3 - 186 transcriptional regulator, putative - none -
fig|6666666.229941.peg.424 CDS AP013045.1 476159 476437 2 + 279 hypothetical protein - none -
fig|6666666.229941.peg.425 CDS AP013045.1 477662 476394 -2 - 1269 HIPA PROTEIN - none -
fig|6666666.229941.peg.426 CDS AP013045.1 477791 477666 -2 - 126 transcriptional regulator, putative - none -
fig|6666666.229941.peg.427 CDS AP013045.1 481074 479701 -3 - 1374 archaeal ATPase, fused to C-terminal DUF234 domain - none -
fig|6666666.229941.peg.428 CDS AP013045.1 481422 481291 -3 - 132 hypothetical protein - none -
fig|6666666.229941.peg.429 CDS AP013045.1 482074 481556 -1 - 519 ErfK/YbiS/YcfS/YnhG family protein - none -
fig|6666666.229941.peg.430 CDS AP013045.1 482382 482708 3 + 327 hypothetical protein - none -
fig|6666666.229941.peg.431 CDS AP013045.1 483482 485644 2 + 2163 Zinc-regulated outer membrane receptor - none -
fig|6666666.229941.peg.432 CDS AP013045.1 485641 486129 1 + 489 FIG00412494: hypothetical protein - none -
fig|6666666.229941.peg.433 CDS AP013045.1 487661 486273 -2 - 1389 Potassium uptake protein TrkH Hyperosmotic potassium uptake;
Potassium homeostasis;
Potassium homeostasis;
Transport system clustering with HemG
fig|6666666.229941.peg.434 CDS AP013045.1 489077 487737 -2 - 1341 Trk system potassium uptake protein TrkA Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Hyperosmotic potassium uptake;
Potassium homeostasis;
Potassium homeostasis
fig|6666666.229941.peg.435 CDS AP013045.1 491002 489074 -1 - 1929 1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis;
Pyridoxin (Vitamin B6) Biosynthesis;
Thiamin biosynthesis
fig|6666666.229941.peg.436 CDS AP013045.1 491244 491101 -3 - 144 hypothetical protein - none -
fig|6666666.229941.peg.437 CDS AP013045.1 491329 492327 1 + 999 Malate dehydrogenase (EC 1.1.1.37) - none -
fig|6666666.229941.peg.438 CDS AP013045.1 492998 492633 -2 - 366 hypothetical protein - none -
fig|6666666.229941.peg.439 CDS AP013045.1 493573 493157 -1 - 417 hypothetical protein - none -
fig|6666666.229941.peg.440 CDS AP013045.1 494654 493662 -2 - 993 Tryptophanyl-tRNA synthetase (EC 6.1.1.2) tRNA aminoacylation, Trp
fig|6666666.229941.peg.441 CDS AP013045.1 495180 494671 -3 - 510 hypothetical protein - none -
fig|6666666.229941.peg.442 CDS AP013045.1 495184 495381 1 + 198 hypothetical protein - none -
fig|6666666.229941.peg.443 CDS AP013045.1 496081 495371 -1 - 711 hypothetical protein - none -
fig|6666666.229941.peg.444 CDS AP013045.1 496702 496094 -1 - 609 GTP-binding protein EngB Universal GTPases
fig|6666666.229941.peg.445 CDS AP013045.1 497463 496807 -3 - 657 Transaldolase (EC 2.2.1.2) Pentose phosphate pathway
fig|6666666.229941.peg.446 CDS AP013045.1 498363 497668 -3 - 696 hypothetical protein - none -
fig|6666666.229941.peg.447 CDS AP013045.1 499009 498407 -1 - 603 Peroxiredoxin - none -
fig|6666666.229941.peg.448 CDS AP013045.1 499360 499184 -1 - 177 hypothetical protein - none -
fig|6666666.229941.peg.449 CDS AP013045.1 499381 499605 1 + 225 hypothetical protein - none -
fig|6666666.229941.peg.450 CDS AP013045.1 500805 499966 -3 - 840 hypothetical protein - none -
fig|6666666.229941.peg.451 CDS AP013045.1 502578 501109 -3 - 1470 hypothetical protein - none -
fig|6666666.229941.peg.452 CDS AP013045.1 502969 502787 -1 - 183 hypothetical protein - none -
fig|6666666.229941.peg.453 CDS AP013045.1 503074 506385 1 + 3312 SusC, outer membrane protein involved in starch binding Cellulosome
fig|6666666.229941.peg.454 CDS AP013045.1 506413 507903 1 + 1491 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.229941.peg.455 CDS AP013045.1 507919 509916 1 + 1998 Acylamino-acid-releasing enzyme (EC 3.4.19.1) Omega peptidases (EC 3.4.19.-)
fig|6666666.229941.peg.456 CDS AP013045.1 510078 511109 3 + 1032 putative anti-sigma factor - none -
fig|6666666.229941.peg.457 CDS AP013045.1 511263 515048 3 + 3786 putative outer membrane protein probably involved in nutrient binding - none -
fig|6666666.229941.peg.458 CDS AP013045.1 515069 516682 2 + 1614 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.229941.peg.459 CDS AP013045.1 516876 520244 3 + 3369 Alpha-L-arabinofuranosidase II precursor (EC 3.2.1.55) - none -
fig|6666666.229941.peg.460 CDS AP013045.1 520278 523157 3 + 2880 glycoside hydrolase family 2, sugar binding - none -
fig|6666666.229941.peg.461 CDS AP013045.1 523178 524659 2 + 1482 Polygalacturonase (EC 3.2.1.15) D-Galacturonate and D-Glucuronate Utilization
fig|6666666.229941.peg.462 CDS AP013045.1 524646 527027 3 + 2382 Alpha-1,2-mannosidase Mannose Metabolism
fig|6666666.229941.peg.463 CDS AP013045.1 527178 527762 3 + 585 COG1399 protein in cluster with ribosomal protein L32p, Bacteroidetes/Chlorobi subfamily - none -
fig|6666666.229941.peg.464 CDS AP013045.1 527850 527969 3 + 120 LSU ribosomal protein L32p Ribosome LSU bacterial
fig|6666666.229941.peg.465 CDS AP013045.1 528054 529061 3 + 1008 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) - none -
fig|6666666.229941.peg.466 CDS AP013045.1 529042 529935 1 + 894 GTP-binding protein Era Bacterial Cell Division;
Glycyl-tRNA synthetase containing cluster;
Universal GTPases
fig|6666666.229941.peg.467 CDS AP013045.1 530013 531326 3 + 1314 GTP-binding protein EngA Universal GTPases
fig|6666666.229941.peg.468 CDS AP013045.1 531463 532755 1 + 1293 Tyrosyl-tRNA synthetase (EC 6.1.1.1) tRNA aminoacylation, Tyr
fig|6666666.229941.peg.469 CDS AP013045.1 533436 532927 -3 - 510 Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) Cobalamin synthesis
fig|6666666.229941.peg.470 CDS AP013045.1 534648 533464 -3 - 1185 Thiol:disulfide interchange protein - none -
fig|6666666.229941.peg.471 CDS AP013045.1 534820 535455 1 + 636 Ribonuclease HI-related protein 3 Ribonuclease H
fig|6666666.229941.peg.472 CDS AP013045.1 536364 535459 -3 - 906 mannosyltransferase - none -
fig|6666666.229941.peg.473 CDS AP013045.1 536558 536680 2 + 123 hypothetical protein - none -
fig|6666666.229941.peg.474 CDS AP013045.1 537230 536763 -2 - 468 hypothetical protein - none -
fig|6666666.229941.peg.475 CDS AP013045.1 538564 537227 -1 - 1338 Argininosuccinate lyase (EC 4.3.2.1) Arginine Biosynthesis -- gjo;
Arginine Biosynthesis extended
fig|6666666.229941.peg.476 CDS AP013045.1 538944 538570 -3 - 375 hypothetical protein - none -
fig|6666666.229941.peg.477 CDS AP013045.1 539661 539023 -3 - 639 Orotate phosphoribosyltransferase (EC 2.4.2.10) De Novo Pyrimidine Synthesis
fig|6666666.229941.peg.478 CDS AP013045.1 540087 545600 3 + 5514 FIG00908368: hypothetical protein - none -
fig|6666666.229941.peg.479 CDS AP013045.1 545597 547912 2 + 2316 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) - none -
fig|6666666.229941.peg.480 CDS AP013045.1 548354 549046 2 + 693 Alpha-(1,3)-fucosyltransferase (EC 2.4.1.65) - none -
fig|6666666.229941.peg.481 CDS AP013045.1 549437 549312 -2 - 126 hypothetical protein - none -
fig|6666666.229941.peg.482 CDS AP013045.1 549395 551242 2 + 1848 Neopullulanase (EC 3.2.1.135) Maltose and Maltodextrin Utilization
fig|6666666.229941.peg.483 CDS AP013045.1 551506 551625 1 + 120 hypothetical protein - none -
fig|6666666.229941.peg.484 CDS AP013045.1 551651 552319 2 + 669 ABC transporter ATP-binding protein YvcR - none -
fig|6666666.229941.peg.485 CDS AP013045.1 552313 553590 1 + 1278 ABC transporter permease protein - none -
fig|6666666.229941.peg.486 CDS AP013045.1 553602 554861 3 + 1260 ABC transporter permease protein - none -
fig|6666666.229941.peg.487 CDS AP013045.1 554883 556001 3 + 1119 Membrane fusion efflux protein - none -
fig|6666666.229941.peg.488 CDS AP013045.1 556051 557379 1 + 1329 putative outer membrane efflux protein - none -
fig|6666666.229941.peg.489 CDS AP013045.1 558369 557770 -3 - 600 hypothetical protein - none -
fig|6666666.229941.peg.490 CDS AP013045.1 558578 558447 -2 - 132 Mobile element protein - none -
fig|6666666.229941.peg.491 CDS AP013045.1 559274 558750 -2 - 525 Mobile element protein - none -
fig|6666666.229941.peg.492 CDS AP013045.1 559442 560977 2 + 1536 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) Entner-Doudoroff Pathway;
Pentose phosphate pathway
fig|6666666.229941.peg.493 CDS AP013045.1 560977 561669 1 + 693 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type Entner-Doudoroff Pathway;
Pentose phosphate pathway
fig|6666666.229941.peg.494 CDS AP013045.1 561720 561848 3 + 129 hypothetical protein - none -
fig|6666666.229941.peg.495 CDS AP013045.1 562119 562667 3 + 549 hypothetical protein - none -
fig|6666666.229941.peg.496 CDS AP013045.1 562748 563533 2 + 786 Acyl-ACP thioesterase - none -
fig|6666666.229941.peg.497 CDS AP013045.1 563564 564376 2 + 813 endonuclease/exonuclease/phosphatase family protein - none -
fig|6666666.229941.peg.498 CDS AP013045.1 564455 565810 2 + 1356 tRNA-i(6)A37 methylthiotransferase Methylthiotransferases;
tRNA-methylthiotransferase containing cluster;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229941.peg.499 CDS AP013045.1 569315 565926 -2 - 3390 Beta-galactosidase (EC 3.2.1.23) Galactosylceramide and Sulfatide metabolism;
Lactose and Galactose Uptake and Utilization;
Lactose utilization
fig|6666666.229941.peg.500 CDS AP013045.1 570089 569340 -2 - 750 FIG00897850: hypothetical protein - none -
fig|6666666.229941.peg.501 CDS AP013045.1 570096 571634 3 + 1539 TldD protein, part of TldE/TldD proteolytic complex CBSS-354.1.peg.2917;
Putative TldE-TldD proteolytic complex
fig|6666666.229941.peg.502 CDS AP013045.1 571636 572955 1 + 1320 TldE protein, part of TldE/TldD proteolytic complex Putative TldE-TldD proteolytic complex
fig|6666666.229941.peg.503 CDS AP013045.1 573169 572942 -1 - 228 hypothetical protein - none -
fig|6666666.229941.peg.504 CDS AP013045.1 573184 573636 1 + 453 probable beta-D-galactosidase Galactosylceramide and Sulfatide metabolism
fig|6666666.229941.peg.505 CDS AP013045.1 573741 574919 3 + 1179 Erythronate-4-phosphate dehydrogenase (EC 1.1.1.290) Pyridoxin (Vitamin B6) Biosynthesis
fig|6666666.229941.peg.506 CDS AP013045.1 574927 576258 1 + 1332 DNA-damage-inducible protein F - none -
fig|6666666.229941.peg.507 CDS AP013045.1 576390 577841 3 + 1452 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) Pentose phosphate pathway
fig|6666666.229941.peg.508 CDS AP013045.1 577860 578669 3 + 810 FIG00898155: hypothetical protein - none -
fig|6666666.229941.peg.509 CDS AP013045.1 582152 578796 -2 - 3357 hypothetical protein - none -
fig|6666666.229941.peg.510 CDS AP013045.1 583870 582926 -1 - 945 putative transporter - none -
fig|6666666.229941.peg.511 CDS AP013045.1 585409 583889 -1 - 1521 GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2) Purine conversions
fig|6666666.229941.peg.512 CDS AP013045.1 585518 586414 2 + 897 hypothetical protein - none -
fig|6666666.229941.peg.513 CDS AP013045.1 586573 587406 1 + 834 sugar phosphate isomerase/epimerase - none -
fig|6666666.229941.peg.514 CDS AP013045.1 587624 589573 2 + 1950 FIG00897375: hypothetical protein - none -
fig|6666666.229941.peg.515 CDS AP013045.1 589592 591226 2 + 1635 FIG00898002: hypothetical protein - none -
fig|6666666.229941.peg.516 CDS AP013045.1 591492 593000 3 + 1509 HtrA protease/chaperone protein Periplasmic Stress Response
fig|6666666.229941.peg.517 CDS AP013045.1 593119 593979 1 + 861 RNA polymerase sigma factor RpoD CBSS-349161.4.peg.2417;
Macromolecular synthesis operon;
Transcription initiation, bacterial sigma factors
fig|6666666.229941.peg.518 CDS AP013045.1 595389 594127 -3 - 1263 DNA internalization-related competence protein ComEC/Rec2 - none -
fig|6666666.229941.peg.519 CDS AP013045.1 596063 595413 -2 - 651 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) Conserved gene cluster associated with Met-tRNA formyltransferase;
Pentose phosphate pathway
fig|6666666.229941.peg.520 CDS AP013045.1 597052 596459 -1 - 594 RNA polymerase sigma-70 factor, ECF subfamily - none -
fig|6666666.229941.peg.521 CDS AP013045.1 598847 597267 -2 - 1581 putative hemin receptor - none -
fig|6666666.229941.peg.522 CDS AP013045.1 600341 598974 -2 - 1368 1,4-beta-cellobiosidase - none -
fig|6666666.229941.peg.523 CDS AP013045.1 600580 600759 1 + 180 hypothetical protein - none -
fig|6666666.229941.peg.524 CDS AP013045.1 601066 601698 1 + 633 hypothetical protein - none -
fig|6666666.229941.peg.525 CDS AP013045.1 601716 602666 3 + 951 hypothetical protein - none -
fig|6666666.229941.peg.526 CDS AP013045.1 602663 604786 2 + 2124 TonB-dependent receptor Ton and Tol transport systems
fig|6666666.229941.peg.527 CDS AP013045.1 604890 605021 3 + 132 hypothetical protein - none -
fig|6666666.229941.peg.528 CDS AP013045.1 605323 605466 1 + 144 hypothetical protein - none -
fig|6666666.229941.peg.529 CDS AP013045.1 605476 606138 1 + 663 Phosphoglycolate phosphatase (EC 3.1.3.18) 2-phosphoglycolate salvage;
Glycolate, glyoxylate interconversions
fig|6666666.229941.peg.530 CDS AP013045.1 606199 607692 1 + 1494 Acetyl-CoA hydrolase (EC 3.1.2.1) - none -
fig|6666666.229941.peg.531 CDS AP013045.1 607748 609781 2 + 2034 Transketolase (EC 2.2.1.1) Pentose phosphate pathway
fig|6666666.229941.peg.532 CDS AP013045.1 609792 610235 3 + 444 Ribose 5-phosphate isomerase B (EC 5.3.1.6) D-ribose utilization;
Pentose phosphate pathway
fig|6666666.229941.peg.533 CDS AP013045.1 611327 610350 -2 - 978 Hemolysin A - none -
fig|6666666.229941.peg.534 CDS AP013045.1 612159 611332 -3 - 828 Hemolysin A - none -
fig|6666666.229941.peg.535 CDS AP013045.1 612425 613339 2 + 915 rRNA small subunit methyltransferase H 16S rRNA modification within P site of ribosome;
Bacterial Cell Division
fig|6666666.229941.peg.536 CDS AP013045.1 613347 613700 3 + 354 Cell division protein FtsL 16S rRNA modification within P site of ribosome;
Bacterial Cell Division;
Bacterial Cytoskeleton;
Stationary phase repair cluster
fig|6666666.229941.peg.537 CDS AP013045.1 613707 615917 3 + 2211 Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129) 16S rRNA modification within P site of ribosome;
Bacterial Cell Division;
Bacterial Cytoskeleton;
CBSS-83331.1.peg.3039
fig|6666666.229941.peg.538 CDS AP013045.1 615930 617393 3 + 1464 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13) Peptidoglycan biosynthesis--gjo
fig|6666666.229941.peg.539 CDS AP013045.1 617401 618666 1 + 1266 Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC 2.7.8.13) - none -
fig|6666666.229941.peg.540 CDS AP013045.1 618669 620006 3 + 1338 UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC 6.3.2.9) Peptidoglycan biosynthesis--gjo
fig|6666666.229941.peg.541 CDS AP013045.1 620020 621327 1 + 1308 Cell division protein FtsW Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ
fig|6666666.229941.peg.542 CDS AP013045.1 621314 622429 2 + 1116 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) cell division core of larger cluster
fig|6666666.229941.peg.543 CDS AP013045.1 622426 623805 1 + 1380 UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8) Peptidoglycan biosynthesis--gjo;
cell division cluster containing FtsQ
fig|6666666.229941.peg.544 CDS AP013045.1 623802 624542 3 + 741 Cell division protein FtsQ Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ;
cell division core of larger cluster
fig|6666666.229941.peg.545 CDS AP013045.1 624536 625858 2 + 1323 Cell division protein FtsA Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ;
cell division core of larger cluster
fig|6666666.229941.peg.546 CDS AP013045.1 625871 627244 2 + 1374 Cell division protein FtsZ (EC 3.4.24.-) Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ;
cell division core of larger cluster
fig|6666666.229941.peg.547 CDS AP013045.1 627278 627727 2 + 450 Transamidase GatB domain protein Macromolecular synthesis operon
fig|6666666.229941.peg.548 CDS AP013045.1 629692 627932 -1 - 1761 FIG00898800: hypothetical protein - none -
fig|6666666.229941.peg.549 CDS AP013045.1 632967 629725 -3 - 3243 SusC, outer membrane protein involved in starch binding Cellulosome
fig|6666666.229941.peg.550 CDS AP013045.1 633073 633222 1 + 150 hypothetical protein - none -
fig|6666666.229941.peg.551 CDS AP013045.1 633282 633914 3 + 633 yadS protein - none -
fig|6666666.229941.peg.552 CDS AP013045.1 634020 633877 -3 - 144 hypothetical protein - none -
fig|6666666.229941.peg.553 CDS AP013045.1 634364 634089 -2 - 276 hypothetical protein - none -
fig|6666666.229941.peg.554 CDS AP013045.1 634755 634606 -3 - 150 hypothetical protein - none -
fig|6666666.229941.peg.555 CDS AP013045.1 638378 635202 -2 - 3177 Acriflavin resistance protein Multidrug Resistance Efflux Pumps
fig|6666666.229941.peg.556 CDS AP013045.1 639548 638412 -2 - 1137 hypothetical protein - none -
fig|6666666.229941.peg.557 CDS AP013045.1 641111 639588 -2 - 1524 outer membrane protein TolC, putative - none -
fig|6666666.229941.peg.558 CDS AP013045.1 644213 641121 -2 - 3093 Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA Cobalt-zinc-cadmium resistance;
Cobalt-zinc-cadmium resistance
fig|6666666.229941.peg.559 CDS AP013045.1 644228 644392 2 + 165 hypothetical protein - none -
fig|6666666.229941.peg.560 CDS AP013045.1 646046 644883 -2 - 1164 hypothetical protein - none -
fig|6666666.229941.peg.561 CDS AP013045.1 647198 646092 -2 - 1107 Probable Co/Zn/Cd efflux system membrane fusion protein Cobalt-zinc-cadmium resistance
fig|6666666.229941.peg.562 CDS AP013045.1 647526 648557 3 + 1032 Holliday junction DNA helicase RuvB RuvABC plus a hypothetical
fig|6666666.229941.peg.563 CDS AP013045.1 648563 650077 2 + 1515 Polysaccharide biosynthesis protein - none -
fig|6666666.229941.peg.564 CDS AP013045.1 650074 651438 1 + 1365 FIG00761799: membrane protein - none -
fig|6666666.229941.peg.565 CDS AP013045.1 651435 653585 3 + 2151 FIG00936757: hypothetical protein - none -
fig|6666666.229941.peg.566 CDS AP013045.1 653602 654594 1 + 993 Glycosyltransferase - none -
fig|6666666.229941.peg.567 CDS AP013045.1 655503 654733 -3 - 771 hypothetical protein - none -
fig|6666666.229941.peg.568 CDS AP013045.1 655585 655971 1 + 387 hypothetical protein - none -
fig|6666666.229941.peg.569 CDS AP013045.1 657447 656260 -3 - 1188 hypothetical protein - none -
fig|6666666.229941.peg.570 CDS AP013045.1 657452 657568 2 + 117 hypothetical protein - none -
fig|6666666.229941.peg.571 CDS AP013045.1 658918 658064 -1 - 855 Signal peptidase I (EC 3.4.21.89) Signal peptidase
fig|6666666.229941.peg.572 CDS AP013045.1 660582 658960 -3 - 1623 FIG00896341: hypothetical protein - none -
fig|6666666.229941.peg.573 CDS AP013045.1 661374 660589 -3 - 786 hypothetical protein - none -
fig|6666666.229941.peg.574 CDS AP013045.1 662328 661534 -3 - 795 hypothetical protein - none -
fig|6666666.229941.peg.575 CDS AP013045.1 663946 663020 -1 - 927 hypothetical protein - none -
fig|6666666.229941.peg.576 CDS AP013045.1 665349 664336 -3 - 1014 hypothetical protein - none -
fig|6666666.229941.peg.577 CDS AP013045.1 668008 666038 -1 - 1971 hypothetical protein - none -
fig|6666666.229941.peg.578 CDS AP013045.1 669304 668291 -1 - 1014 hypothetical protein - none -
fig|6666666.229941.peg.579 CDS AP013045.1 669758 669540 -2 - 219 hypothetical protein - none -
fig|6666666.229941.peg.580 CDS AP013045.1 670823 669930 -2 - 894 Signal peptidase I (EC 3.4.21.89) Signal peptidase
fig|6666666.229941.peg.581 CDS AP013045.1 672449 670827 -2 - 1623 FIG00896341: hypothetical protein - none -
fig|6666666.229941.peg.582 CDS AP013045.1 673376 672456 -2 - 921 hypothetical protein - none -
fig|6666666.229941.peg.583 CDS AP013045.1 673857 673402 -3 - 456 hypothetical protein - none -
fig|6666666.229941.peg.584 CDS AP013045.1 677819 677679 -2 - 141 hypothetical protein - none -
fig|6666666.229941.peg.585 CDS AP013045.1 682021 679709 -1 - 2313 hypothetical protein - none -
fig|6666666.229941.peg.586 CDS AP013045.1 684072 682390 -3 - 1683 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) - none -
fig|6666666.229941.peg.587 CDS AP013045.1 684229 685542 1 + 1314 tRNA-t(6)A37 methylthiotransferase Heat shock dnaK gene cluster extended;
Methylthiotransferases
fig|6666666.229941.peg.588 CDS AP013045.1 685548 686444 3 + 897 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) - none -
fig|6666666.229941.peg.589 CDS AP013045.1 686653 687690 1 + 1038 Glycosyltransferase - none -
fig|6666666.229941.peg.590 CDS AP013045.1 687869 687756 -2 - 114 hypothetical protein - none -
fig|6666666.229941.peg.591 CDS AP013045.1 689635 688499 -1 - 1137 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) Ammonia assimilation;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229941.peg.592 CDS AP013045.1 689977 689648 -1 - 330 Transcriptional regulator, PadR family CBSS-1352.1.peg.856
fig|6666666.229941.peg.593 CDS AP013045.1 690068 690253 2 + 186 hypothetical protein - none -
fig|6666666.229941.peg.594 CDS AP013045.1 690208 691116 1 + 909 Zinc ABC transporter, inner membrane permease protein ZnuB - none -
fig|6666666.229941.peg.595 CDS AP013045.1 691199 691567 2 + 369 Endonuclease (EC 3.1.-.-) - none -
fig|6666666.229941.peg.596 CDS AP013045.1 691586 691939 2 + 354 MmcQ - none -
fig|6666666.229941.peg.597 CDS AP013045.1 691929 692672 3 + 744 Biotin--protein ligase (EC 6.3.4.9, EC 6.3.4.10, EC 6.3.4.11, EC 6.3.4.15) - none -
fig|6666666.229941.peg.598 CDS AP013045.1 692797 695976 1 + 3180 hypothetical protein - none -
fig|6666666.229941.peg.599 CDS AP013045.1 696861 696001 -3 - 861 ATP synthase gamma chain (EC 3.6.3.14) - none -
fig|6666666.229941.peg.600 CDS AP013045.1 698491 696890 -1 - 1602 ATP synthase alpha chain (EC 3.6.3.14) - none -
fig|6666666.229941.peg.601 CDS AP013045.1 699093 698515 -3 - 579 ATP synthase delta chain (EC 3.6.3.14) - none -
fig|6666666.229941.peg.602 CDS AP013045.1 699655 699161 -1 - 495 ATP synthase F0 sector subunit b - none -
fig|6666666.229941.peg.603 CDS AP013045.1 699909 699673 -3 - 237 ATP synthase F0 sector subunit c - none -
fig|6666666.229941.peg.604 CDS AP013045.1 701014 699965 -1 - 1050 ATP synthase F0 sector subunit a - none -
fig|6666666.229941.peg.605 CDS AP013045.1 701477 701037 -2 - 441 hypothetical protein - none -
fig|6666666.229941.peg.606 CDS AP013045.1 701751 701506 -3 - 246 ATP synthase epsilon chain (EC 3.6.3.14) - none -
fig|6666666.229941.peg.607 CDS AP013045.1 703282 701756 -1 - 1527 ATP synthase beta chain (EC 3.6.3.14) - none -
fig|6666666.229941.peg.608 CDS AP013045.1 704848 703550 -1 - 1299 carboxyl-terminal protease-related protein - none -
fig|6666666.229941.peg.609 CDS AP013045.1 705686 704895 -2 - 792 hypothetical protein - none -
fig|6666666.229941.peg.610 CDS AP013045.1 707336 705759 -2 - 1578 Peptide chain release factor 3 Translation termination factors bacterial
fig|6666666.229941.peg.611 CDS AP013045.1 708212 707349 -2 - 864 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229941.peg.612 CDS AP013045.1 708731 708231 -2 - 501 hypothetical protein - none -
fig|6666666.229941.peg.613 CDS AP013045.1 708856 709713 1 + 858 Beta-lactamase-like - none -
fig|6666666.229941.peg.614 CDS AP013045.1 712697 709839 -2 - 2859 ZINC PROTEASE (EC 3.4.99.-) - none -
fig|6666666.229941.peg.615 CDS AP013045.1 712855 712694 -1 - 162 hypothetical protein - none -
fig|6666666.229941.peg.616 CDS AP013045.1 714434 712863 -2 - 1572 Probable poly(beta-D-mannuronate) O-acetylase (EC 2.3.1.-) - none -
fig|6666666.229941.peg.617 CDS AP013045.1 715822 714431 -1 - 1392 putative periplasmic protein - none -
fig|6666666.229941.peg.618 CDS AP013045.1 717215 715797 -2 - 1419 FIG00898563: hypothetical protein - none -
fig|6666666.229941.peg.619 CDS AP013045.1 717514 718983 1 + 1470 FIG00937589: hypothetical protein - none -
fig|6666666.229941.peg.620 CDS AP013045.1 719183 721090 2 + 1908 Chaperone protein DnaK GroEL GroES;
Heat shock dnaK gene cluster extended;
Protein chaperones
fig|6666666.229941.peg.621 CDS AP013045.1 721868 723136 2 + 1269 phage integrase family protein - none -
fig|6666666.229941.peg.622 CDS AP013045.1 723617 723802 2 + 186 Mobilizable transposon, tnpC protein - none -
fig|6666666.229941.peg.623 CDS AP013045.1 724719 723868 -3 - 852 hypothetical protein - none -
fig|6666666.229941.peg.624 CDS AP013045.1 725018 725374 2 + 357 excisionase - none -
fig|6666666.229941.peg.625 CDS AP013045.1 725389 726594 1 + 1206 FIG00939579: hypothetical protein - none -
fig|6666666.229941.peg.626 CDS AP013045.1 726825 727712 3 + 888 DNA primase (EC 2.7.7.-) CBSS-349161.4.peg.2417;
Macromolecular synthesis operon
fig|6666666.229941.peg.627 CDS AP013045.1 728076 728204 3 + 129 mobilization protein - none -
fig|6666666.229941.peg.628 CDS AP013045.1 728194 729135 1 + 942 Mobilization protein BmgA - none -
fig|6666666.229941.peg.629 CDS AP013045.1 729161 729883 2 + 723 FIG00936814: hypothetical protein - none -
fig|6666666.229941.peg.630 CDS AP013045.1 730001 730216 2 + 216 transcriptional regulator, putative - none -
fig|6666666.229941.peg.631 CDS AP013045.1 730288 731289 1 + 1002 FIG036446: hypothetical protein Rad50-Mre11 DNA repair cluster
fig|6666666.229941.peg.632 CDS AP013045.1 731370 731495 3 + 126 FIG036446: hypothetical protein Rad50-Mre11 DNA repair cluster
fig|6666666.229941.peg.633 CDS AP013045.1 731485 732768 1 + 1284 Bipolar DNA helicase HerA Rad50-Mre11 DNA repair cluster
fig|6666666.229941.peg.634 CDS AP013045.1 733410 732973 -3 - 438 Mobile element protein - none -
fig|6666666.229941.peg.635 CDS AP013045.1 733514 734581 2 + 1068 Bipolar DNA helicase HerA Rad50-Mre11 DNA repair cluster
fig|6666666.229941.peg.636 CDS AP013045.1 734777 735823 2 + 1047 hypothetical protein - none -
fig|6666666.229941.peg.637 CDS AP013045.1 735879 737225 3 + 1347 Transcriptional regulator, ArsR family - none -
fig|6666666.229941.peg.638 CDS AP013045.1 737481 737795 3 + 315 acetyltransferase, GNAT family - none -
fig|6666666.229941.peg.639 CDS AP013045.1 737930 739294 2 + 1365 ATP-dependent DNA helicase - none -
fig|6666666.229941.peg.640 CDS AP013045.1 739397 739870 2 + 474 FIG00936042: hypothetical protein - none -
fig|6666666.229941.peg.641 CDS AP013045.1 740107 740301 1 + 195 FIG00937549: hypothetical protein - none -
fig|6666666.229941.peg.642 CDS AP013045.1 740313 740498 3 + 186 Filamentation induced by cAMP protein Fic - none -
fig|6666666.229941.peg.643 CDS AP013045.1 740580 740912 3 + 333 Filamentation induced by cAMP protein Fic - none -
fig|6666666.229941.peg.644 CDS AP013045.1 740933 743260 2 + 2328 Beta-glucosidase (EC 3.2.1.21) - none -
fig|6666666.229941.peg.645 CDS AP013045.1 743275 744312 1 + 1038 hypothetical protein - none -
fig|6666666.229941.peg.646 CDS AP013045.1 744426 744304 -3 - 123 hypothetical protein - none -
fig|6666666.229941.peg.647 CDS AP013045.1 744867 745460 3 + 594 hypothetical protein - none -
fig|6666666.229941.peg.648 CDS AP013045.1 745489 747990 1 + 2502 Zinc metalloproteinase precursor (EC 3.4.24.29) / aureolysin Listeria Pathogenicity Island LIPI-1 extended
fig|6666666.229941.peg.649 CDS AP013045.1 748791 751379 3 + 2589 DNA mismatch repair protein MutS DNA repair, bacterial MutL-MutS system;
DNA repair system including RecA, MutS and a hypothetical protein
fig|6666666.229941.peg.650 CDS AP013045.1 751379 752365 2 + 987 Gluconolactonase (EC 3.1.1.17) Entner-Doudoroff Pathway
fig|6666666.229941.peg.651 CDS AP013045.1 752355 754553 3 + 2199 3@1-to-5@1 exoribonuclease RNase R RNA processing and degradation, bacterial
fig|6666666.229941.peg.652 CDS AP013045.1 755231 754638 -2 - 594 hypothetical protein - none -
fig|6666666.229941.peg.653 CDS AP013045.1 756904 755333 -1 - 1572 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis;
Phosphoglycerate mutase protein family
fig|6666666.229941.peg.654 CDS AP013045.1 759323 756969 -2 - 2355 hypothetical protein - none -
fig|6666666.229941.peg.655 CDS AP013045.1 759406 759287 -1 - 120 hypothetical protein - none -
fig|6666666.229941.peg.656 CDS AP013045.1 762085 759455 -1 - 2631 Alfa-L-rhamnosidase (EC 3.2.1.40) - none -
fig|6666666.229941.peg.657 CDS AP013045.1 762755 762249 -2 - 507 Nitroreductase family protein - none -
fig|6666666.229941.peg.658 CDS AP013045.1 763500 764231 3 + 732 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) Bacterial Cell Division
fig|6666666.229941.peg.659 CDS AP013045.1 764273 765604 2 + 1332 Aspartokinase (EC 2.7.2.4) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch;
Threonine and Homoserine Biosynthesis
fig|6666666.229941.peg.660 CDS AP013045.1 765633 766793 3 + 1161 Diaminopimelate decarboxylase (EC 4.1.1.20) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229941.peg.661 CDS AP013045.1 767371 767018 -1 - 354 FIG00897164: hypothetical protein - none -
fig|6666666.229941.peg.662 CDS AP013045.1 767403 767525 3 + 123 hypothetical protein - none -
fig|6666666.229941.peg.663 CDS AP013045.1 771044 767559 -2 - 3486 FIG00896849: hypothetical protein - none -
fig|6666666.229941.peg.664 CDS AP013045.1 772386 771130 -3 - 1257 probable NADH-dependent dehydrogenase - none -
fig|6666666.229941.peg.665 CDS AP013045.1 772841 776236 2 + 3396 TonB family protein / TonB-dependent receptor Ton and Tol transport systems
fig|6666666.229941.peg.666 CDS AP013045.1 776245 777876 1 + 1632 putative outer membrane protein probably involved in nutrient binding - none -
fig|6666666.229941.peg.667 CDS AP013045.1 777990 779534 3 + 1545 Choline-sulfatase (EC 3.1.6.6) - none -
fig|6666666.229941.peg.668 CDS AP013045.1 780062 779649 -2 - 414 hypothetical protein - none -
fig|6666666.229941.peg.669 CDS AP013045.1 783939 780307 -3 - 3633 hemolysin-type calcium-binding region protein - none -
fig|6666666.229941.peg.670 CDS AP013045.1 784033 783902 -1 - 132 hypothetical protein - none -
fig|6666666.229941.peg.671 CDS AP013045.1 786516 784360 -3 - 2157 Translation elongation factor G-related protein Translation elongation factor G family;
Translation elongation factors bacterial
fig|6666666.229941.peg.672 CDS AP013045.1 786598 787836 1 + 1239 Hypothetical radical SAM family enzyme, NOT coproporphyrinogen III oxidase, oxygen-independent Heat shock dnaK gene cluster extended
fig|6666666.229941.peg.673 CDS AP013045.1 787818 787997 3 + 180 hypothetical protein - none -
fig|6666666.229941.peg.674 CDS AP013045.1 788041 788541 1 + 501 FIG00898490: hypothetical protein - none -
fig|6666666.229941.peg.675 CDS AP013045.1 788549 788689 2 + 141 hypothetical protein - none -
fig|6666666.229941.peg.676 CDS AP013045.1 789004 789747 1 + 744 ABC-type transport system involved in resistance to organic solvents, permease component - none -
fig|6666666.229941.peg.677 CDS AP013045.1 789747 790520 3 + 774 Methionine ABC transporter ATP-binding protein Methionine Degradation
fig|6666666.229941.peg.678 CDS AP013045.1 791136 790657 -3 - 480 LSU ribosomal protein L17p Ribosome LSU bacterial
fig|6666666.229941.peg.679 CDS AP013045.1 792135 791143 -3 - 993 DNA-directed RNA polymerase alpha subunit (EC 2.7.7.6) RNA polymerase bacterial
fig|6666666.229941.peg.680 CDS AP013045.1 792748 792143 -1 - 606 SSU ribosomal protein S4p (S9e) Ribosome SSU bacterial
fig|6666666.229941.peg.681 CDS AP013045.1 793252 792863 -1 - 390 SSU ribosomal protein S11p (S14e) Ribosome SSU bacterial
fig|6666666.229941.peg.682 CDS AP013045.1 793642 793262 -1 - 381 SSU ribosomal protein S13p (S18e) Ribosome SSU bacterial
fig|6666666.229941.peg.683 CDS AP013045.1 793794 793678 -3 - 117 LSU ribosomal protein L36p Ribosome LSU bacterial
fig|6666666.229941.peg.684 CDS AP013045.1 794038 793820 -1 - 219 Translation initiation factor 1 Translation initiation factors bacterial
fig|6666666.229941.peg.685 CDS AP013045.1 794824 794042 -1 - 783 Methionine aminopeptidase (EC 3.4.11.18) CBSS-312309.3.peg.1965;
Translation termination factors bacterial
fig|6666666.229941.peg.686 CDS AP013045.1 796167 794827 -3 - 1341 Preprotein translocase secY subunit (TC 3.A.5.1.1) - none -
fig|6666666.229941.peg.687 CDS AP013045.1 796640 796170 -2 - 471 LSU ribosomal protein L15p (L27Ae) Ribosome LSU bacterial
fig|6666666.229941.peg.688 CDS AP013045.1 796869 796693 -3 - 177 LSU ribosomal protein L30p (L7e) Ribosome LSU bacterial
fig|6666666.229941.peg.689 CDS AP013045.1 797345 796887 -2 - 459 SSU ribosomal protein S5p (S2e) Ribosome SSU bacterial
fig|6666666.229941.peg.690 CDS AP013045.1 797752 797408 -1 - 345 LSU ribosomal protein L18p (L5e) Ribosome LSU bacterial
fig|6666666.229941.peg.691 CDS AP013045.1 798262 797777 -1 - 486 LSU ribosomal protein L6p (L9e) Ribosome LSU bacterial
fig|6666666.229941.peg.692 CDS AP013045.1 798710 798348 -2 - 363 SSU ribosomal protein S8p (S15Ae) Ribosome SSU bacterial
fig|6666666.229941.peg.693 CDS AP013045.1 799083 798814 -3 - 270 SSU ribosomal protein S14p (S29e) @ SSU ribosomal protein S14p (S29e), zinc-independent Ribosome SSU bacterial;
Ribosome SSU bacterial
fig|6666666.229941.peg.694 CDS AP013045.1 799647 799087 -3 - 561 LSU ribosomal protein L5p (L11e) Ribosome LSU bacterial
fig|6666666.229941.peg.695 CDS AP013045.1 799961 799644 -2 - 318 LSU ribosomal protein L24p (L26e) Ribosome LSU bacterial
fig|6666666.229941.peg.696 CDS AP013045.1 800346 799981 -3 - 366 LSU ribosomal protein L14p (L23e) Ribosome LSU bacterial
fig|6666666.229941.peg.697 CDS AP013045.1 800617 800348 -1 - 270 SSU ribosomal protein S17p (S11e) Ribosome SSU bacterial
fig|6666666.229941.peg.698 CDS AP013045.1 800817 800620 -3 - 198 LSU ribosomal protein L29p (L35e) Ribosome LSU bacterial
fig|6666666.229941.peg.699 CDS AP013045.1 801257 800823 -2 - 435 LSU ribosomal protein L16p (L10e) Ribosome LSU bacterial
fig|6666666.229941.peg.700 CDS AP013045.1 802053 801280 -3 - 774 SSU ribosomal protein S3p (S3e) Ribosome SSU bacterial
fig|6666666.229941.peg.701 CDS AP013045.1 802392 802060 -3 - 333 LSU ribosomal protein L22p (L17e) Ribosome LSU bacterial
fig|6666666.229941.peg.702 CDS AP013045.1 802394 802558 2 + 165 hypothetical protein - none -
fig|6666666.229941.peg.703 CDS AP013045.1 802780 802514 -1 - 267 SSU ribosomal protein S19p (S15e) Ribosome SSU bacterial
fig|6666666.229941.peg.704 CDS AP013045.1 803624 802800 -2 - 825 LSU ribosomal protein L2p (L8e) Ribosome LSU bacterial
fig|6666666.229941.peg.705 CDS AP013045.1 803924 803631 -2 - 294 LSU ribosomal protein L23p (L23Ae) Ribosome LSU bacterial
fig|6666666.229941.peg.706 CDS AP013045.1 804570 803941 -3 - 630 LSU ribosomal protein L4p (L1e) Ribosome LSU bacterial
fig|6666666.229941.peg.707 CDS AP013045.1 805192 804575 -1 - 618 LSU ribosomal protein L3p (L3e) Ribosome LSU bacterial
fig|6666666.229941.peg.708 CDS AP013045.1 805517 805212 -2 - 306 SSU ribosomal protein S10p (S20e) Ribosome SSU bacterial
fig|6666666.229941.peg.709 CDS AP013045.1 807682 805535 -1 - 2148 Translation elongation factor G Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Translation elongation factor G family;
Translation elongation factors bacterial;
Universal GTPases
fig|6666666.229941.peg.710 CDS AP013045.1 808071 807682 -3 - 390 SSU ribosomal protein S7p (S5e) Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Ribosome SSU bacterial
fig|6666666.229941.peg.711 CDS AP013045.1 808568 808323 -2 - 246 SSU ribosomal protein S12p (S23e) Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Ribosomal protein S12p Asp methylthiotransferase;
Ribosome SSU bacterial
fig|6666666.229941.peg.712 CDS AP013045.1 809164 809289 1 + 126 hypothetical protein - none -
fig|6666666.229941.peg.713 CDS AP013045.1 810713 809424 -2 - 1290 S-adenosylmethionine synthetase (EC 2.5.1.6) Methionine Degradation
fig|6666666.229941.peg.714 CDS AP013045.1 810897 810727 -3 - 171 hypothetical protein - none -
fig|6666666.229941.peg.715 CDS AP013045.1 811137 811631 3 + 495 Cytidine deaminase (EC 3.5.4.5) tRNA modification Bacteria
fig|6666666.229941.peg.716 CDS AP013045.1 811806 812276 3 + 471 RNA polymerase ECF-type sigma factor - none -
fig|6666666.229941.peg.717 CDS AP013045.1 814301 812307 -2 - 1995 DNA topoisomerase III (EC 5.99.1.2) DNA processing cluster;
DNA topoisomerases, Type I, ATP-independent
fig|6666666.229941.peg.718 CDS AP013045.1 814281 814481 3 + 201 hypothetical protein - none -
fig|6666666.229941.peg.719 CDS AP013045.1 814959 816197 3 + 1239 Mobile element protein - none -
fig|6666666.229941.peg.720 CDS AP013045.1 816402 816277 -3 - 126 hypothetical protein - none -
fig|6666666.229941.peg.721 CDS AP013045.1 816512 817381 2 + 870 putative fiber protein - none -
fig|6666666.229941.peg.722 CDS AP013045.1 817427 818212 2 + 786 hypothetical protein - none -
fig|6666666.229941.peg.723 CDS AP013045.1 818217 819008 3 + 792 hypothetical protein - none -
fig|6666666.229941.peg.724 CDS AP013045.1 819176 819844 2 + 669 hypothetical protein - none -
fig|6666666.229941.peg.725 CDS AP013045.1 819841 821388 1 + 1548 Protease - none -
fig|6666666.229941.peg.726 CDS AP013045.1 821559 822428 3 + 870 Protease - none -
fig|6666666.229941.peg.727 CDS AP013045.1 823974 822613 -3 - 1362 Histidyl-tRNA synthetase (EC 6.1.1.21) tRNA aminoacylation, His
fig|6666666.229941.peg.728 CDS AP013045.1 824664 823978 -3 - 687 FIG00897182: hypothetical protein - none -
fig|6666666.229941.peg.729 CDS AP013045.1 826046 824775 -2 - 1272 Adenylosuccinate synthetase (EC 6.3.4.4) Purine conversions
fig|6666666.229941.peg.730 CDS AP013045.1 826563 826081 -3 - 483 transcriptional regulator, Fur family Oxidative stress
fig|6666666.229941.peg.731 CDS AP013045.1 828668 826608 -2 - 2061 Dipeptidyl-peptidase III (EC 3.4.14.4) - none -
fig|6666666.229941.peg.732 CDS AP013045.1 828817 828704 -1 - 114 hypothetical protein - none -
fig|6666666.229941.peg.733 CDS AP013045.1 828867 830300 3 + 1434 COG3178: Predicted phosphotransferase related to Ser/Thr protein kinases - none -
fig|6666666.229941.peg.734 CDS AP013045.1 830306 831046 2 + 741 mannose-1-phosphate guanyltransferase - none -
fig|6666666.229941.peg.735 CDS AP013045.1 831616 831041 -1 - 576 RNA polymerase ECF-type sigma factor - none -
fig|6666666.229941.peg.736 CDS AP013045.1 831739 832755 1 + 1017 putative anti-sigma factor - none -
fig|6666666.229941.peg.737 CDS AP013045.1 832966 836169 1 + 3204 Putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.229941.peg.738 CDS AP013045.1 836181 837689 3 + 1509 hypothetical protein - none -
fig|6666666.229941.peg.739 CDS AP013045.1 837715 838809 1 + 1095 endonuclease/exonuclease/phosphatase family precursor (38.1 kD) (5F605) - none -
fig|6666666.229941.peg.740 CDS AP013045.1 838880 839605 2 + 726 FIG002003: Protein YdjA - none -
fig|6666666.229941.peg.741 CDS AP013045.1 839727 840161 3 + 435 Deoxyuridine 5@1-triphosphate nucleotidohydrolase (EC 3.6.1.23) Housecleaning nucleoside triphosphate pyrophosphatases;
Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.229941.peg.742 CDS AP013045.1 840198 841982 3 + 1785 FIG00898077: hypothetical protein - none -
fig|6666666.229941.peg.743 CDS AP013045.1 841972 842802 1 + 831 hypothetical protein - none -
fig|6666666.229941.peg.744 CDS AP013045.1 842799 844043 3 + 1245 Periplasmic septal ring factor with murein hydrolase activity EnvC/YibP Phosphoglycerate mutase protein family
fig|6666666.229941.peg.745 CDS AP013045.1 846175 844082 -1 - 2094 ATP-dependent DNA helicase RecG (EC 3.6.1.-) - none -
fig|6666666.229941.peg.746 CDS AP013045.1 846297 846181 -3 - 117 hypothetical protein - none -
fig|6666666.229941.peg.747 CDS AP013045.1 849226 847208 -1 - 2019 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins Ton and Tol transport systems
fig|6666666.229941.peg.748 CDS AP013045.1 849312 849929 3 + 618 RNA polymerase ECF-type sigma factor - none -
fig|6666666.229941.peg.749 CDS AP013045.1 849982 850371 1 + 390 FIG00896494: hypothetical protein - none -
fig|6666666.229941.peg.750 CDS AP013045.1 850408 850851 1 + 444 hypothetical protein - none -
fig|6666666.229941.peg.751 CDS AP013045.1 851747 850869 -2 - 879 Abortive infection protein - none -
fig|6666666.229941.peg.752 CDS AP013045.1 852084 851839 -3 - 246 RNA binding protein - none -
fig|6666666.229941.peg.753 CDS AP013045.1 852126 852251 3 + 126 hypothetical protein - none -
fig|6666666.229941.peg.754 CDS AP013045.1 852395 853756 2 + 1362 Cell division trigger factor (EC 5.2.1.8) Bacterial Cell Division
fig|6666666.229941.peg.755 CDS AP013045.1 853770 854435 3 + 666 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) Proteolysis in bacteria, ATP-dependent;
cAMP signaling in bacteria
fig|6666666.229941.peg.756 CDS AP013045.1 854453 855682 2 + 1230 ATP-dependent Clp protease ATP-binding subunit ClpX Proteolysis in bacteria, ATP-dependent
fig|6666666.229941.peg.757 CDS AP013045.1 855709 858069 1 + 2361 ATP-dependent DNA helicase RecQ DNA repair, bacterial RecFOR pathway
fig|6666666.229941.peg.758 CDS AP013045.1 858108 859706 3 + 1599 Survival protein SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA) (EC 5.2.1.8) ECSIG4-SIG7;
Peptidyl-prolyl cis-trans isomerase;
Periplasmic Stress Response
fig|6666666.229941.peg.759 CDS AP013045.1 859741 860592 1 + 852 FIG00898614: hypothetical protein - none -
fig|6666666.229941.peg.760 CDS AP013045.1 860651 861967 2 + 1317 Survival protein SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA) (EC 5.2.1.8) ECSIG4-SIG7;
Peptidyl-prolyl cis-trans isomerase;
Periplasmic Stress Response
fig|6666666.229941.peg.761 CDS AP013045.1 862087 863568 1 + 1482 hypothetical protein - none -
fig|6666666.229941.peg.762 CDS AP013045.1 863584 863895 1 + 312 hypothetical protein - none -
fig|6666666.229941.peg.763 CDS AP013045.1 863892 865718 3 + 1827 DNA mismatch repair protein MutL DNA repair, bacterial MutL-MutS system
fig|6666666.229941.peg.764 CDS AP013045.1 866391 866507 3 + 117 hypothetical protein - none -
fig|6666666.229941.peg.765 CDS AP013045.1 867008 867130 2 + 123 hypothetical protein - none -
fig|6666666.229941.peg.766 CDS AP013045.1 867859 867110 -1 - 750 Lipopolysaccharide ABC transporter, ATP-binding protein LptB - none -
fig|6666666.229941.peg.767 CDS AP013045.1 867959 868435 2 + 477 thioesterase family protein - none -
fig|6666666.229941.peg.768 CDS AP013045.1 869534 868527 -2 - 1008 Electron transfer flavoprotein, alpha subunit - none -
fig|6666666.229941.peg.769 CDS AP013045.1 870338 869556 -2 - 783 Electron transfer flavoprotein, beta subunit - none -
fig|6666666.229941.peg.770 CDS AP013045.1 871493 870345 -2 - 1149 Butyryl-CoA dehydrogenase (EC 1.3.99.2) - none -
fig|6666666.229941.peg.771 CDS AP013045.1 872877 871519 -3 - 1359 Succinate-semialdehyde dehydrogenase, CoA-dependent - none -
fig|6666666.229941.peg.772 CDS AP013045.1 874005 872890 -3 - 1116 Alcohol dehydrogenase (EC 1.1.1.1) 5-FCL-like protein;
Fermentations: Mixed acid;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229941.peg.773 CDS AP013045.1 875330 874038 -2 - 1293 4-hydroxybutyrate:acetyl-CoA CoA transferase (EC 2.3.1.-) - none -
fig|6666666.229941.peg.774 CDS AP013045.1 875650 875333 -1 - 318 NifU-related protein - none -
fig|6666666.229941.peg.775 CDS AP013045.1 877115 875655 -2 - 1461 4-hydroxybutanoyl-CoA dehydratase (EC 4.2.1.-) / Vinylacetyl-CoA Delta-isomerase (EC 5.3.3.3) - none -
fig|6666666.229941.peg.776 CDS AP013045.1 878208 877876 -3 - 333 hypothetical protein - none -
fig|6666666.229941.peg.777 CDS AP013045.1 879237 878785 -3 - 453 hypothetical protein - none -
fig|6666666.229941.peg.778 CDS AP013045.1 880799 879387 -2 - 1413 Putative pyrogenic exotoxin B - none -
fig|6666666.229941.peg.779 CDS AP013045.1 881508 881353 -3 - 156 hypothetical protein - none -
fig|6666666.229941.peg.780 CDS AP013045.1 881909 882559 2 + 651 hydrolase, haloacid dehalogenase-like family - none -
fig|6666666.229941.peg.781 CDS AP013045.1 882644 884863 2 + 2220 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I Stringent Response, (p)ppGpp metabolism
fig|6666666.229941.peg.782 CDS AP013045.1 886279 884852 -1 - 1428 tRNA nucleotidyltransferase (EC 2.7.7.21) (EC 2.7.7.25) tRNA nucleotidyltransferase
fig|6666666.229941.peg.783 CDS AP013045.1 886867 886394 -1 - 474 Free methionine-(R)-sulfoxide reductase, contains GAF domain - none -
fig|6666666.229941.peg.784 CDS AP013045.1 887566 886931 -1 - 636 Methyltransferase type 11 - none -
fig|6666666.229941.peg.785 CDS AP013045.1 888200 889222 2 + 1023 heme biosynthesis protein (NirJ) related protein - none -
fig|6666666.229941.peg.786 CDS AP013045.1 889219 890283 1 + 1065 bi-domain oxidoreductase - none -
fig|6666666.229941.peg.787 CDS AP013045.1 890343 890501 3 + 159 hypothetical protein - none -
fig|6666666.229941.peg.788 CDS AP013045.1 890542 890961 1 + 420 3-dehydroquinate dehydratase II (EC 4.2.1.10) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate);
Quinate degradation
fig|6666666.229941.peg.789 CDS AP013045.1 890958 892403 3 + 1446 Pyruvate kinase (EC 2.7.1.40) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229941.peg.790 CDS AP013045.1 892422 893051 3 + 630 O-methyltransferase family protein [C1] - none -
fig|6666666.229941.peg.791 CDS AP013045.1 893149 893718 1 + 570 RNA polymerase ECF-type sigma factor - none -
fig|6666666.229941.peg.792 CDS AP013045.1 893828 894811 2 + 984 putative anti-sigma factor - none -
fig|6666666.229941.peg.793 CDS AP013045.1 895073 898477 2 + 3405 TonB family protein / TonB-dependent receptor Ton and Tol transport systems
fig|6666666.229941.peg.794 CDS AP013045.1 898745 900031 2 + 1287 Putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.229941.peg.795 CDS AP013045.1 900207 901001 3 + 795 Probable secreted protein - none -
fig|6666666.229941.peg.796 CDS AP013045.1 901220 901555 2 + 336 Ribosome-binding factor A CBSS-138119.3.peg.2719;
NusA-TFII Cluster;
Translation initiation factors bacterial
fig|6666666.229941.peg.797 CDS AP013045.1 901563 903638 3 + 2076 Lipoprotein releasing system transmembrane protein LolC Lipoprotein sorting system
fig|6666666.229941.peg.798 CDS AP013045.1 903654 904409 3 + 756 Zinc ABC transporter, ATP-binding protein ZnuC - none -
fig|6666666.229941.peg.799 CDS AP013045.1 904458 904826 3 + 369 hypothetical protein - none -
fig|6666666.229941.peg.800 CDS AP013045.1 905523 904834 -3 - 690 D-alanyl-D-alanine dipeptidase (EC 3.4.13.22) - none -
fig|6666666.229941.peg.801 CDS AP013045.1 906360 905533 -3 - 828 Glutamate racemase (EC 5.1.1.3) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229941.peg.802 CDS AP013045.1 906938 906444 -2 - 495 Outer membrane protein H precursor Llipid A biosynthesis cluster;
Periplasmic Stress Response
fig|6666666.229941.peg.803 CDS AP013045.1 907464 907003 -3 - 462 Outer membrane protein H precursor Llipid A biosynthesis cluster;
Periplasmic Stress Response
fig|6666666.229941.peg.804 CDS AP013045.1 910305 907603 -3 - 2703 Outer membrane protein assembly factor YaeT precursor Llipid A biosynthesis cluster
fig|6666666.229941.peg.805 CDS AP013045.1 911058 910318 -3 - 741 Undecaprenyl diphosphate synthase (EC 2.5.1.31) CBSS-83331.1.peg.3039;
Isoprenoid Biosynthesis;
Isoprenoinds for Quinones;
Polyprenyl Diphosphate Biosynthesis
fig|6666666.229941.peg.806 CDS AP013045.1 911820 911080 -3 - 741 hypothetical protein - none -
fig|6666666.229941.peg.807 CDS AP013045.1 913188 911869 -3 - 1320 hypothetical protein - none -
fig|6666666.229941.peg.808 CDS AP013045.1 914412 913339 -3 - 1074 Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin, FMN and FAD metabolism in plants
fig|6666666.229941.peg.809 CDS AP013045.1 914516 915328 2 + 813 Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2 A Gammaproteobacteria Cluster Relating to Translation;
CBSS-216600.3.peg.802;
Translation termination factors bacterial
fig|6666666.229941.peg.810 CDS AP013045.1 915313 915828 1 + 516 Putative regulatory protein - none -
fig|6666666.229941.peg.811 CDS AP013045.1 915881 916498 2 + 618 Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy Biotin biosynthesis Experimental
fig|6666666.229941.peg.812 CDS AP013045.1 918222 916588 -3 - 1635 Heat shock protein 60 family chaperone GroEL GroEL GroES
fig|6666666.229941.peg.813 CDS AP013045.1 918540 918271 -3 - 270 Heat shock protein 60 family co-chaperone GroES GroEL GroES
fig|6666666.229941.peg.814 CDS AP013045.1 918860 919924 2 + 1065 putative DNA mismatch repair protein - none -
fig|6666666.229941.peg.815 CDS AP013045.1 919929 920402 3 + 474 hypothetical protein - none -
fig|6666666.229941.peg.816 CDS AP013045.1 920905 920789 -1 - 117 hypothetical protein - none -
fig|6666666.229941.peg.817 CDS AP013045.1 921064 921627 1 + 564 Translation elongation factor P Translation elongation factors bacterial
fig|6666666.229941.peg.818 CDS AP013045.1 921672 922379 3 + 708 DNA repair protein RadC Bacterial cell division cluster;
DNA repair, bacterial
fig|6666666.229941.peg.819 CDS AP013045.1 922445 922762 2 + 318 PaaD-like protein (DUF59) involved in Fe-S cluster assembly Iron-sulfur cluster assembly
fig|6666666.229941.peg.820 CDS AP013045.1 922765 923526 1 + 762 UDP-2,3-diacylglucosamine diphosphatase (EC 3.6.1.54) Llipid A biosynthesis cluster
fig|6666666.229941.peg.821 CDS AP013045.1 924068 923601 -2 - 468 hypothetical protein - none -
fig|6666666.229941.peg.822 CDS AP013045.1 926275 924071 -1 - 2205 ABC transporter ATP-binding protein - none -
fig|6666666.229941.peg.823 CDS AP013045.1 928689 926290 -3 - 2400 TonB-dependent receptor, putative - none -
fig|6666666.229941.peg.824 CDS AP013045.1 929950 928691 -1 - 1260 Arylsulfatase regulator (Fe-S oxidoreductase) - none -
fig|6666666.229941.peg.825 CDS AP013045.1 931019 930876 -2 - 144 hypothetical protein - none -
fig|6666666.229941.peg.826 CDS AP013045.1 933297 930979 -3 - 2319 putative TonB-dependent receptor - none -
fig|6666666.229941.peg.827 CDS AP013045.1 934647 933337 -3 - 1311 Arylsulfatase regulator - none -
fig|6666666.229941.peg.828 CDS AP013045.1 935096 934905 -2 - 192 hypothetical protein - none -
fig|6666666.229941.peg.829 CDS AP013045.1 935558 935352 -2 - 207 hypothetical protein - none -
fig|6666666.229941.peg.830 CDS AP013045.1 936449 935637 -2 - 813 papain cysteine protease family protein - none -
fig|6666666.229941.peg.831 CDS AP013045.1 938507 936897 -2 - 1611 forsythia cell detaching factor protein - none -
fig|6666666.229941.peg.832 CDS AP013045.1 939699 938959 -3 - 741 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) Ammonia assimilation;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229941.peg.833 CDS AP013045.1 940853 939750 -2 - 1104 GTP-binding and nucleic acid-binding protein YchF Universal GTPases
fig|6666666.229941.peg.834 CDS AP013045.1 941018 941131 2 + 114 hypothetical protein - none -
fig|6666666.229941.peg.835 CDS AP013045.1 941177 944344 2 + 3168 outer membrane protein Omp121 - none -
fig|6666666.229941.peg.836 CDS AP013045.1 944369 945922 2 + 1554 hypothetical protein - none -
fig|6666666.229941.peg.837 CDS AP013045.1 945947 946636 2 + 690 hypothetical protein - none -
fig|6666666.229941.peg.838 CDS AP013045.1 946643 947335 2 + 693 hypothetical protein - none -
fig|6666666.229941.peg.839 CDS AP013045.1 947857 951045 1 + 3189 SusC, outer membrane protein involved in starch binding Cellulosome
fig|6666666.229941.peg.840 CDS AP013045.1 951085 952611 1 + 1527 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.229941.peg.841 CDS AP013045.1 952710 954062 3 + 1353 Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8) D-Galacturonate and D-Glucuronate Utilization;
Xylose utilization
fig|6666666.229941.peg.842 CDS AP013045.1 954059 955090 2 + 1032 hypothetical protein - none -
fig|6666666.229941.peg.843 CDS AP013045.1 955167 955547 3 + 381 Putative sugar translocase in surface polysaccharides biosynthesis - none -
fig|6666666.229941.peg.844 CDS AP013045.1 955544 956488 2 + 945 Glycosyl transferase, group 2 family protein - none -
fig|6666666.229941.peg.845 CDS AP013045.1 957556 956477 -1 - 1080 putative anti-sigma factor - none -
fig|6666666.229941.peg.846 CDS AP013045.1 957878 957570 -2 - 309 RNA polymerase ECF-type sigma factor - none -
fig|6666666.229941.peg.847 CDS AP013045.1 958433 961903 2 + 3471 SusC, outer membrane protein involved in starch binding Cellulosome
fig|6666666.229941.peg.848 CDS AP013045.1 961915 963480 1 + 1566 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.229941.peg.849 CDS AP013045.1 963488 964888 2 + 1401 hypothetical protein - none -
fig|6666666.229941.peg.850 CDS AP013045.1 964890 966017 3 + 1128 N-acetylglucosamine related transporter, NagX Chitin and N-acetylglucosamine utilization
fig|6666666.229941.peg.851 CDS AP013045.1 966809 966063 -2 - 747 Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) Cobalamin synthesis
fig|6666666.229941.peg.852 CDS AP013045.1 966933 968513 3 + 1581 MG(2+) CHELATASE FAMILY PROTEIN / ComM-related protein - none -
fig|6666666.229941.peg.853 CDS AP013045.1 969514 968567 -1 - 948 Magnesium and cobalt transport protein CorA Magnesium transport
fig|6666666.229941.peg.854 CDS AP013045.1 970334 969519 -2 - 816 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase (EC 2.1.1.182) ECSIG4-SIG7;
RNA methylation;
Ribosome biogenesis bacterial
fig|6666666.229941.peg.855 CDS AP013045.1 970510 971529 1 + 1020 putative dolichol-P-glucose synthetase - none -
fig|6666666.229941.peg.856 CDS AP013045.1 972450 971545 -3 - 906 Phage integrase - none -
fig|6666666.229941.peg.857 CDS AP013045.1 974668 972629 -1 - 2040 Alpha-galactosidase (EC 3.2.1.22) Galactosylceramide and Sulfatide metabolism;
Lactose and Galactose Uptake and Utilization
fig|6666666.229941.peg.858 CDS AP013045.1 975930 974671 -3 - 1260 hypothetical protein - none -
fig|6666666.229941.peg.859 CDS AP013045.1 977549 976002 -2 - 1548 hypothetical protein - none -
fig|6666666.229941.peg.860 CDS AP013045.1 979224 977587 -3 - 1638 hypothetical protein - none -
fig|6666666.229941.peg.861 CDS AP013045.1 982004 979230 -2 - 2775 TonB-dependent receptor Ton and Tol transport systems
fig|6666666.229941.peg.862 CDS AP013045.1 984941 982284 -2 - 2658 Beta-galactosidase (EC 3.2.1.23) Galactosylceramide and Sulfatide metabolism;
Lactose and Galactose Uptake and Utilization;
Lactose utilization
fig|6666666.229941.peg.863 CDS AP013045.1 985975 985190 -1 - 786 Nucleoside triphosphate pyrophosphohydrolase MazG (EC 3.6.1.8) Nucleoside triphosphate pyrophosphohydrolase MazG
fig|6666666.229941.peg.864 CDS AP013045.1 988056 985978 -3 - 2079 Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8) Biogenesis of c-type cytochromes;
Periplasmic disulfide interchange
fig|6666666.229941.peg.865 CDS AP013045.1 988200 988319 3 + 120 hypothetical protein - none -
fig|6666666.229941.peg.866 CDS AP013045.1 989156 988557 -2 - 600 hypothetical protein - none -
fig|6666666.229941.peg.867 CDS AP013045.1 989758 989234 -1 - 525 Mobile element protein - none -
fig|6666666.229941.peg.868 CDS AP013045.1 989927 990898 2 + 972 Hemagglutinin - none -
fig|6666666.229941.peg.869 CDS AP013045.1 990906 991643 3 + 738 Hemagglutinin - none -
fig|6666666.229941.peg.870 CDS AP013045.1 991640 992806 2 + 1167 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) De Novo Purine Biosynthesis
fig|6666666.229941.peg.871 CDS AP013045.1 992861 993973 2 + 1113 Peptide chain release factor 1 A Gammaproteobacteria Cluster Relating to Translation;
CBSS-216600.3.peg.802;
Translation termination factors bacterial
fig|6666666.229941.peg.872 CDS AP013045.1 994024 994854 1 + 831 Orotidine 5@1-phosphate decarboxylase (EC 4.1.1.23) De Novo Pyrimidine Synthesis
fig|6666666.229941.peg.873 CDS AP013045.1 994948 995700 1 + 753 hypothetical protein - none -
fig|6666666.229941.peg.874 CDS AP013045.1 995874 996911 3 + 1038 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC 2.3.1.191) - none -
fig|6666666.229941.peg.875 CDS AP013045.1 996924 998309 3 + 1386 N-acetylglucosamine deacetylase (EC 3.5.1.-) / 3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabZ form (EC 4.2.1.59) Llipid A biosynthesis cluster
fig|6666666.229941.peg.876 CDS AP013045.1 998313 999095 3 + 783 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase (EC 2.3.1.129) Llipid A biosynthesis cluster
fig|6666666.229941.peg.877 CDS AP013045.1 999116 999679 2 + 564 FIG00897033: hypothetical protein - none -
fig|6666666.229941.peg.878 CDS AP013045.1 999686 1000585 2 + 900 tRNA dimethylallyltransferase (EC 2.5.1.75) tRNA modification Bacteria;
tRNA processing
fig|6666666.229941.peg.879 CDS AP013045.1 1000627 1002099 1 + 1473 FIG00898772: hypothetical protein - none -
fig|6666666.229941.peg.880 CDS AP013045.1 1002112 1002987 1 + 876 Purine nucleoside phosphorylase (EC 2.4.2.1) Adenosyl nucleosidases;
Deoxyribose and Deoxynucleoside Catabolism;
Purine conversions
fig|6666666.229941.peg.881 CDS AP013045.1 1003020 1004651 3 + 1632 Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) - none -
fig|6666666.229941.peg.882 CDS AP013045.1 1005496 1005996 1 + 501 Toprim domain protein CBSS-315749.4.peg.3658
fig|6666666.229941.peg.883 CDS AP013045.1 1005984 1006292 3 + 309 DNA binding protein, excisionase family, putative - none -
fig|6666666.229941.peg.884 CDS AP013045.1 1007382 1006447 -3 - 936 Transposase - none -
fig|6666666.229941.peg.885 CDS AP013045.1 1007515 1008387 1 + 873 FIG00938431: hypothetical protein - none -
fig|6666666.229941.peg.886 CDS AP013045.1 1008631 1009338 1 + 708 FIG00935812: hypothetical protein - none -
fig|6666666.229941.peg.887 CDS AP013045.1 1009371 1010321 3 + 951 FIG00936210: hypothetical protein - none -
fig|6666666.229941.peg.888 CDS AP013045.1 1010651 1011013 2 + 363 Mobile element protein - none -
fig|6666666.229941.peg.889 CDS AP013045.1 1011067 1012017 1 + 951 IS1478 transposase - none -
fig|6666666.229941.peg.890 CDS AP013045.1 1012899 1013831 3 + 933 MscS family mechanosensitive ion channel - none -
fig|6666666.229941.peg.891 CDS AP013045.1 1013837 1015099 2 + 1263 Collagenase precursor (EC 3.4.-.-) - none -
fig|6666666.229941.peg.892 CDS AP013045.1 1016590 1015325 -1 - 1266 PAP2 superfamily protein - none -
fig|6666666.229941.peg.893 CDS AP013045.1 1018200 1016905 -3 - 1296 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase (EC 6.3.2.10) Peptidoglycan biosynthesis--gjo
fig|6666666.229941.peg.894 CDS AP013045.1 1018278 1019120 3 + 843 Dihydropteroate synthase (EC 2.5.1.15) Folate Biosynthesis;
Folate biosynthesis cluster
fig|6666666.229941.peg.895 CDS AP013045.1 1019130 1019834 3 + 705 Diadenylate cyclase spyDAC; Bacterial checkpoint controller DisA with nucleotide-binding domain Bacterial checkpoint-control-related cluster;
Bacterial checkpoint-control-related cluster
fig|6666666.229941.peg.896 CDS AP013045.1 1019788 1019904 1 + 117 Diadenylate cyclase spyDAC; Bacterial checkpoint controller DisA with nucleotide-binding domain Bacterial checkpoint-control-related cluster;
Bacterial checkpoint-control-related cluster
fig|6666666.229941.peg.897 CDS AP013045.1 1019955 1020974 3 + 1020 Phosphate acetyltransferase (EC 2.3.1.8) Fermentations: Mixed acid;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229941.peg.898 CDS AP013045.1 1020971 1022182 2 + 1212 Acetate kinase (EC 2.7.2.1) CBSS-257314.1.peg.752;
Fermentations: Mixed acid;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229941.peg.899 CDS AP013045.1 1022315 1022455 2 + 141 hypothetical protein - none -
fig|6666666.229941.peg.900 CDS AP013045.1 1024467 1022815 -3 - 1653 hypothetical protein - none -
fig|6666666.229941.peg.901 CDS AP013045.1 1027483 1024484 -1 - 3000 SusC, outer membrane protein involved in starch binding Cellulosome
fig|6666666.229941.peg.902 CDS AP013045.1 1027638 1027763 3 + 126 hypothetical protein - none -
fig|6666666.229941.peg.903 CDS AP013045.1 1027965 1029290 3 + 1326 Deoxyguanosinetriphosphate triphosphohydrolase (EC 3.1.5.1) - none -
fig|6666666.229941.peg.904 CDS AP013045.1 1030234 1029302 -1 - 933 Ribosome small subunit-stimulated GTPase EngC Universal GTPases
fig|6666666.229941.peg.905 CDS AP013045.1 1030797 1030234 -3 - 564 Ribosome recycling factor Ribosome recycling related cluster;
Translation termination factors bacterial
fig|6666666.229941.peg.906 CDS AP013045.1 1031696 1031097 -2 - 600 Glutathione peroxidase family protein - none -
fig|6666666.229941.peg.907 CDS AP013045.1 1036455 1031953 -3 - 4503 hypothetical protein - none -
fig|6666666.229941.peg.908 CDS AP013045.1 1036578 1036712 3 + 135 hypothetical protein - none -
fig|6666666.229941.peg.909 CDS AP013045.1 1037690 1037562 -2 - 129 hypothetical protein - none -
fig|6666666.229941.peg.910 CDS AP013045.1 1038596 1037727 -2 - 870 Mobile element protein - none -
fig|6666666.229941.peg.911 CDS AP013045.1 1039359 1038676 -3 - 684 hypothetical protein - none -
fig|6666666.229941.peg.912 CDS AP013045.1 1041319 1039499 -1 - 1821 FIG00899092: hypothetical protein - none -
fig|6666666.229941.peg.913 CDS AP013045.1 1042755 1041481 -3 - 1275 FIG00937754: hypothetical protein - none -
fig|6666666.229941.peg.914 CDS AP013045.1 1042867 1043598 1 + 732 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229941.peg.915 CDS AP013045.1 1043615 1045024 2 + 1410 Signal peptidase I (EC 3.4.21.89) Signal peptidase
fig|6666666.229941.peg.916 CDS AP013045.1 1045073 1045891 2 + 819 Signal peptidase I (EC 3.4.21.89) Signal peptidase
fig|6666666.229941.peg.917 CDS AP013045.1 1045895 1046515 2 + 621 FIG00649844: hypothetical protein - none -
fig|6666666.229941.peg.918 CDS AP013045.1 1047865 1046753 -1 - 1113 GldN - none -
fig|6666666.229941.peg.919 CDS AP013045.1 1049459 1047894 -2 - 1566 hypothetical protein - none -
fig|6666666.229941.peg.920 CDS AP013045.1 1050599 1049511 -2 - 1089 FIG00896507: hypothetical protein - none -
fig|6666666.229941.peg.921 CDS AP013045.1 1052074 1050632 -1 - 1443 GldJ - none -
fig|6666666.229941.peg.922 CDS AP013045.1 1053001 1052105 -1 - 897 hypothetical protein - none -
fig|6666666.229941.peg.923 CDS AP013045.1 1053422 1053201 -2 - 222 FIG00935798: hypothetical protein - none -
fig|6666666.229941.peg.924 CDS AP013045.1 1054069 1053506 -1 - 564 ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17) - none -
fig|6666666.229941.peg.925 CDS AP013045.1 1055037 1054075 -3 - 963 hypothetical protein - none -
fig|6666666.229941.peg.926 CDS AP013045.1 1055628 1061120 3 + 5493 hypothetical protein - none -
fig|6666666.229941.peg.927 CDS AP013045.1 1061517 1061260 -3 - 258 Acyl carrier protein (ACP1) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229941.peg.928 CDS AP013045.1 1062075 1061536 -3 - 540 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) - none -
fig|6666666.229941.peg.929 CDS AP013045.1 1063352 1062165 -2 - 1188 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41) - none -
fig|6666666.229941.peg.930 CDS AP013045.1 1063774 1063349 -1 - 426 possible thioesterase - none -
fig|6666666.229941.peg.931 CDS AP013045.1 1064240 1063785 -2 - 456 3-hydroxydecanoyl-[ACP] dehydratase (EC 4.2.1.60) - none -
fig|6666666.229941.peg.932 CDS AP013045.1 1065341 1064262 -2 - 1080 Biotin synthesis protein BioC Biotin biosynthesis Experimental
fig|6666666.229941.peg.933 CDS AP013045.1 1066233 1065325 -3 - 909 Lysophospholipid acyltransferase - none -
fig|6666666.229941.peg.934 CDS AP013045.1 1066480 1066235 -1 - 246 Acyl carrier protein Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229941.peg.935 CDS AP013045.1 1067289 1066564 -3 - 726 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) - none -
fig|6666666.229941.peg.936 CDS AP013045.1 1067409 1068881 3 + 1473 Cysteinyl-tRNA synthetase (EC 6.1.1.16) tRNA aminoacylation, Cys
fig|6666666.229941.peg.937 CDS AP013045.1 1070838 1068988 -3 - 1851 FIG00898157: hypothetical protein - none -
fig|6666666.229941.peg.938 CDS AP013045.1 1070794 1070970 1 + 177 hypothetical protein - none -
fig|6666666.229941.peg.939 CDS AP013045.1 1071079 1075155 1 + 4077 DNA-binding response regulator, AraC family - none -
fig|6666666.229941.peg.940 CDS AP013045.1 1075157 1076425 2 + 1269 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) CBSS-211586.1.peg.2832;
Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229941.peg.941 CDS AP013045.1 1076435 1078453 2 + 2019 Outer membrane lipoprotein omp16 precursor Ton and Tol transport systems
fig|6666666.229941.peg.942 CDS AP013045.1 1078779 1078660 -3 - 120 hypothetical protein - none -
fig|6666666.229941.peg.943 CDS AP013045.1 1080098 1078779 -2 - 1320 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.229941.peg.944 CDS AP013045.1 1083477 1080142 -3 - 3336 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.229941.peg.945 CDS AP013045.1 1086144 1083514 -3 - 2631 FIG00938541: hypothetical protein - none -
fig|6666666.229941.peg.946 CDS AP013045.1 1086219 1086356 3 + 138 hypothetical protein - none -
fig|6666666.229941.peg.947 CDS AP013045.1 1086756 1086595 -3 - 162 hypothetical protein - none -
fig|6666666.229941.peg.948 CDS AP013045.1 1087528 1087169 -1 - 360 hypothetical protein - none -
fig|6666666.229941.peg.949 CDS AP013045.1 1087878 1087543 -3 - 336 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.229941.peg.950 CDS AP013045.1 1089342 1089004 -3 - 339 hypothetical protein - none -
fig|6666666.229941.peg.951 CDS AP013045.1 1090672 1089365 -1 - 1308 Outer membrane efflux protein - none -
fig|6666666.229941.peg.952 CDS AP013045.1 1092828 1090669 -3 - 2160 probable bacteriocin/lantibiotic ABC transporter, ATP-binding protein - none -
fig|6666666.229941.peg.953 CDS AP013045.1 1094000 1092843 -2 - 1158 HlyD family secretion protein - none -
fig|6666666.229941.peg.954 CDS AP013045.1 1094289 1095641 3 + 1353 IS1478 transposase - none -
fig|6666666.229941.peg.955 CDS AP013045.1 1095858 1095727 -3 - 132 hypothetical protein - none -
fig|6666666.229941.peg.956 CDS AP013045.1 1096369 1096229 -1 - 141 hypothetical protein - none -
fig|6666666.229941.peg.957 CDS AP013045.1 1096899 1096783 -3 - 117 hypothetical protein - none -
fig|6666666.229941.peg.958 CDS AP013045.1 1097339 1097172 -2 - 168 hypothetical protein - none -
fig|6666666.229941.peg.959 CDS AP013045.1 1097383 1097568 1 + 186 hypothetical protein - none -
fig|6666666.229941.peg.960 CDS AP013045.1 1097856 1097674 -3 - 183 hypothetical protein - none -
fig|6666666.229941.peg.961 CDS AP013045.1 1098032 1099375 2 + 1344 two-component system sensor histidine kinase - none -
fig|6666666.229941.peg.962 CDS AP013045.1 1099368 1100057 3 + 690 Transcriptional regulatory protein rprY - none -
fig|6666666.229941.peg.963 CDS AP013045.1 1100131 1100328 1 + 198 hypothetical protein - none -
fig|6666666.229941.peg.964 CDS AP013045.1 1100352 1101992 3 + 1641 Fumarate hydratase class I, anaerobic (EC 4.2.1.2) - none -
fig|6666666.229941.peg.965 CDS AP013045.1 1102071 1102718 3 + 648 FIG00897871: hypothetical protein - none -
fig|6666666.229941.peg.966 CDS AP013045.1 1103319 1102729 -3 - 591 peptidyl-prolyl cis-trans isomerase - none -
fig|6666666.229941.peg.967 CDS AP013045.1 1104897 1103353 -3 - 1545 Glycyl-tRNA synthetase (EC 6.1.1.14) Glycyl-tRNA synthetase containing cluster;
tRNA aminoacylation, Gly
fig|6666666.229941.peg.968 CDS AP013045.1 1105824 1104979 -3 - 846 hypothetical protein - none -
fig|6666666.229941.peg.969 CDS AP013045.1 1105857 1106105 3 + 249 hypothetical protein - none -
fig|6666666.229941.peg.970 CDS AP013045.1 1106147 1106272 2 + 126 hypothetical protein - none -
fig|6666666.229941.peg.971 CDS AP013045.1 1106366 1107871 2 + 1506 FIG00896786: hypothetical protein - none -
fig|6666666.229941.peg.972 CDS AP013045.1 1107911 1109311 2 + 1401 dehydrogenase, putative exo-alpha-sialidase - none -
fig|6666666.229941.peg.973 CDS AP013045.1 1109308 1110246 1 + 939 Sugar phosphate isomerases/epimerases family protein YcjR Maltose and Maltodextrin Utilization
fig|6666666.229941.peg.974 CDS AP013045.1 1110282 1111160 3 + 879 Nitric oxide-dependent regulator DnrN or NorA Iron-sulfur cluster assembly;
Nitrosative stress
fig|6666666.229941.peg.975 CDS AP013045.1 1111170 1111349 3 + 180 hypothetical protein - none -
fig|6666666.229941.peg.976 CDS AP013045.1 1111896 1112009 3 + 114 hypothetical protein - none -
fig|6666666.229941.peg.977 CDS AP013045.1 1112237 1111977 -2 - 261 hypothetical protein - none -
fig|6666666.229941.peg.978 CDS AP013045.1 1112304 1115405 3 + 3102 Putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.229941.peg.979 CDS AP013045.1 1115430 1117289 3 + 1860 Putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.229941.peg.980 CDS AP013045.1 1117326 1117793 3 + 468 hypothetical protein - none -
fig|6666666.229941.peg.981 CDS AP013045.1 1118459 1118238 -2 - 222 hypothetical protein - none -
fig|6666666.229941.peg.982 CDS AP013045.1 1118532 1121759 3 + 3228 TonB family protein / TonB-dependent receptor Ton and Tol transport systems
fig|6666666.229941.peg.983 CDS AP013045.1 1121781 1123799 3 + 2019 Putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.229941.peg.984 CDS AP013045.1 1124862 1125419 3 + 558 hypothetical protein - none -
fig|6666666.229941.peg.985 CDS AP013045.1 1126830 1125478 -3 - 1353 hypothetical protein - none -
fig|6666666.229941.peg.986 CDS AP013045.1 1127633 1126827 -2 - 807 FIG00653406: hypothetical protein - none -
fig|6666666.229941.peg.987 CDS AP013045.1 1128433 1127642 -1 - 792 RTX toxins and related Ca2+-binding proteins - none -
fig|6666666.229941.peg.988 CDS AP013045.1 1129943 1128453 -2 - 1491 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.229941.peg.989 CDS AP013045.1 1133023 1130006 -1 - 3018 TonB family protein / TonB-dependent receptor Ton and Tol transport systems
fig|6666666.229941.peg.990 CDS AP013045.1 1133364 1133224 -3 - 141 hypothetical protein - none -
fig|6666666.229941.peg.991 CDS AP013045.1 1133411 1134544 2 + 1134 3-carboxymuconate cyclase - none -
fig|6666666.229941.peg.992 CDS AP013045.1 1135986 1134721 -3 - 1266 hypothetical protein - none -
fig|6666666.229941.peg.993 CDS AP013045.1 1136223 1136041 -3 - 183 hypothetical protein - none -
fig|6666666.229941.peg.994 CDS AP013045.1 1136711 1136262 -2 - 450 probable integral membrane protein Cj0341c - none -
fig|6666666.229941.peg.995 CDS AP013045.1 1137715 1136699 -1 - 1017 hypothetical protein - none -
fig|6666666.229941.peg.996 CDS AP013045.1 1139005 1137731 -1 - 1275 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) De Novo Purine Biosynthesis
fig|6666666.229941.peg.997 CDS AP013045.1 1139685 1139293 -3 - 393 MarC family integral membrane protein - none -
fig|6666666.229941.peg.998 CDS AP013045.1 1139735 1139992 2 + 258 hypothetical protein - none -
fig|6666666.229941.peg.999 CDS AP013045.1 1142067 1140013 -3 - 2055 Alpha-L-fucosidase (EC 3.2.1.51) - none -
fig|6666666.229941.peg.1000 CDS AP013045.1 1142478 1142630 3 + 153 hypothetical protein - none -
fig|6666666.229941.peg.1001 CDS AP013045.1 1142627 1144861 2 + 2235 Zinc metalloproteinase precursor (EC 3.4.24.29) / aureolysin Listeria Pathogenicity Island LIPI-1 extended
fig|6666666.229941.peg.1002 CDS AP013045.1 1145318 1145157 -2 - 162 hypothetical protein - none -
fig|6666666.229941.peg.1003 CDS AP013045.1 1145815 1145702 -1 - 114 hypothetical protein - none -
fig|6666666.229941.peg.1004 CDS AP013045.1 1145843 1146553 2 + 711 hypothetical protein - none -
fig|6666666.229941.peg.1005 CDS AP013045.1 1146774 1146920 3 + 147 hypothetical protein - none -
fig|6666666.229941.peg.1006 CDS AP013045.1 1146934 1148250 1 + 1317 Zinc metalloproteinase precursor (EC 3.4.24.29) / aureolysin Listeria Pathogenicity Island LIPI-1 extended
fig|6666666.229941.peg.1007 CDS AP013045.1 1148698 1148537 -1 - 162 hypothetical protein - none -
fig|6666666.229941.peg.1008 CDS AP013045.1 1148936 1149073 2 + 138 hypothetical protein - none -
fig|6666666.229941.peg.1009 CDS AP013045.1 1149226 1149089 -1 - 138 hypothetical protein - none -
fig|6666666.229941.peg.1010 CDS AP013045.1 1149604 1152024 1 + 2421 hypothetical protein - none -
fig|6666666.229941.peg.1011 CDS AP013045.1 1153717 1152404 -1 - 1314 Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage Bacterial Cell Division;
Bacterial Cytoskeleton;
Cell division-ribosomal stress proteins cluster;
Stationary phase repair cluster
fig|6666666.229941.peg.1012 CDS AP013045.1 1154688 1153717 -3 - 972 MoxR-like ATPases - none -
fig|6666666.229941.peg.1013 CDS AP013045.1 1156171 1154690 -1 - 1482 FIG00652157: hypothetical protein - none -
fig|6666666.229941.peg.1014 CDS AP013045.1 1156736 1156182 -2 - 555 FIG00404596: hypothetical protein - none -
fig|6666666.229941.peg.1015 CDS AP013045.1 1157498 1156842 -2 - 657 hypothetical protein - none -
fig|6666666.229941.peg.1016 CDS AP013045.1 1157451 1157567 3 + 117 hypothetical protein - none -
fig|6666666.229941.peg.1017 CDS AP013045.1 1158744 1157761 -3 - 984 FIG00649403: hypothetical protein - none -
fig|6666666.229941.peg.1018 CDS AP013045.1 1159492 1159313 -1 - 180 hypothetical protein - none -
fig|6666666.229941.peg.1019 CDS AP013045.1 1161004 1159652 -1 - 1353 IS1478 transposase - none -
fig|6666666.229941.peg.1020 CDS AP013045.1 1161536 1161237 -2 - 300 hypothetical protein - none -
fig|6666666.229941.peg.1021 CDS AP013045.1 1162577 1161594 -2 - 984 6-phosphofructokinase (EC 2.7.1.11) Glycolysis and Gluconeogenesis
fig|6666666.229941.peg.1022 CDS AP013045.1 1164111 1162705 -3 - 1407 Uronate isomerase (EC 5.3.1.12) D-Galacturonate and D-Glucuronate Utilization
fig|6666666.229941.peg.1023 CDS AP013045.1 1165916 1164111 -2 - 1806 Sodium-dependent phosphate transporter NhaA, NhaD and Sodium-dependent phosphate transporters;
Phosphate metabolism
fig|6666666.229941.peg.1024 CDS AP013045.1 1165981 1167660 1 + 1680 Uridine kinase (EC 2.7.1.48) - none -
fig|6666666.229941.peg.1025 CDS AP013045.1 1168571 1167657 -2 - 915 Deoxyribose-phosphate aldolase (EC 4.1.2.4) Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.229941.peg.1026 CDS AP013045.1 1168862 1168578 -2 - 285 hypothetical protein - none -
fig|6666666.229941.peg.1027 CDS AP013045.1 1170471 1168909 -3 - 1563 N-acetylgalactosamine-6-sulfatase - none -
fig|6666666.229941.peg.1028 CDS AP013045.1 1170567 1170929 3 + 363 Rhodanese-like domain protein - none -
fig|6666666.229941.peg.1029 CDS AP013045.1 1171934 1170957 -2 - 978 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch;
Threonine and Homoserine Biosynthesis
fig|6666666.229941.peg.1030 CDS AP013045.1 1172225 1173556 2 + 1332 hypothetical protein - none -
fig|6666666.229941.peg.1031 CDS AP013045.1 1174602 1173550 -3 - 1053 tRNA dihydrouridine synthase B (EC 1.-.-.-) tRNA modification Bacteria
fig|6666666.229941.peg.1032 CDS AP013045.1 1175300 1174641 -2 - 660 hypothetical protein - none -
fig|6666666.229941.peg.1033 CDS AP013045.1 1175681 1175403 -2 - 279 Transporter - none -
fig|6666666.229941.peg.1034 CDS AP013045.1 1176778 1175750 -1 - 1029 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) - none -
fig|6666666.229941.peg.1035 CDS AP013045.1 1177984 1176785 -1 - 1200 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179) - none -
fig|6666666.229941.peg.1036 CDS AP013045.1 1178191 1179744 1 + 1554 Adenosylhomocysteinase (EC 3.3.1.1) Methionine Degradation
fig|6666666.229941.peg.1037 CDS AP013045.1 1179858 1180127 3 + 270 hypothetical protein - none -
fig|6666666.229941.peg.1038 CDS AP013045.1 1181958 1180129 -3 - 1830 putative TonB-dependent receptor - none -
fig|6666666.229941.peg.1039 CDS AP013045.1 1184975 1181976 -2 - 3000 TPR-domain containing protein - none -
fig|6666666.229941.peg.1040 CDS AP013045.1 1184992 1185117 1 + 126 hypothetical protein - none -
fig|6666666.229941.peg.1041 CDS AP013045.1 1188067 1185095 -1 - 2973 Phosphoenolpyruvate synthase / Pyruvate phosphate dikinase - none -
fig|6666666.229941.peg.1042 CDS AP013045.1 1188151 1189512 1 + 1362 NADP-specific glutamate dehydrogenase (EC 1.4.1.4) Arginine and Ornithine Degradation;
Glutamate dehydrogenases;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229941.peg.1043 CDS AP013045.1 1190135 1189560 -2 - 576 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) RuvABC plus a hypothetical
fig|6666666.229941.peg.1044 CDS AP013045.1 1190446 1190132 -1 - 315 hypothetical protein - none -
fig|6666666.229941.peg.1045 CDS AP013045.1 1192282 1190627 -1 - 1656 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes - none -
fig|6666666.229941.peg.1046 CDS AP013045.1 1192690 1196448 1 + 3759 hypothetical protein - none -
fig|6666666.229941.peg.1047 CDS AP013045.1 1199238 1197409 -3 - 1830 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (EC 1.17.7.1) CBSS-83331.1.peg.3039;
Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.229941.peg.1048 CDS AP013045.1 1199741 1199235 -2 - 507 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) De Novo Purine Biosynthesis
fig|6666666.229941.peg.1049 CDS AP013045.1 1200125 1199748 -2 - 378 Glycine cleavage system H protein CBSS-315749.4.peg.3658;
Glycine and Serine Utilization;
Glycine cleavage system
fig|6666666.229941.peg.1050 CDS AP013045.1 1201672 1200206 -1 - 1467 RNA polymerase sigma-54 factor RpoN Transcription initiation, bacterial sigma factors
fig|6666666.229941.peg.1051 CDS AP013045.1 1201683 1202696 3 + 1014 Ribonuclease Z (EC 3.1.26.11) tRNA processing
fig|6666666.229941.peg.1052 CDS AP013045.1 1203083 1203253 2 + 171 hypothetical protein - none -
fig|6666666.229941.peg.1053 CDS AP013045.1 1203279 1203818 3 + 540 hypothetical protein - none -
fig|6666666.229941.peg.1054 CDS AP013045.1 1203833 1206304 2 + 2472 Zinc metalloproteinase precursor (EC 3.4.24.29) / aureolysin Listeria Pathogenicity Island LIPI-1 extended
fig|6666666.229941.peg.1055 CDS AP013045.1 1206354 1206500 3 + 147 hypothetical protein - none -
fig|6666666.229941.peg.1056 CDS AP013045.1 1206961 1206668 -1 - 294 D-tyrosyl-tRNA(Tyr) deacylase (EC 3.6.1.n1) - none -
fig|6666666.229941.peg.1057 CDS AP013045.1 1208950 1207145 -1 - 1806 Excinuclease ABC subunit C DNA repair, UvrABC system
fig|6666666.229941.peg.1058 CDS AP013045.1 1210845 1208995 -3 - 1851 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA Cell Division Subsystem including YidCD;
RNA modification and chromosome partitioning cluster;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.229941.peg.1059 CDS AP013045.1 1214886 1211629 -3 - 3258 Oar protein - none -
fig|6666666.229941.peg.1060 CDS AP013045.1 1216416 1214980 -3 - 1437 5@1-nucleotidase (EC 3.1.3.5) Purine conversions
fig|6666666.229941.peg.1061 CDS AP013045.1 1216562 1217572 2 + 1011 6-phosphofructokinase (EC 2.7.1.11) Glycolysis and Gluconeogenesis
fig|6666666.229941.peg.1062 CDS AP013045.1 1217684 1218037 2 + 354 MmcQ - none -
fig|6666666.229941.peg.1063 CDS AP013045.1 1218100 1218285 1 + 186 hypothetical protein - none -
fig|6666666.229941.peg.1064 CDS AP013045.1 1219051 1218260 -1 - 792 Ribonuclease III (EC 3.1.26.3) RNA processing and degradation, bacterial
fig|6666666.229941.peg.1065 CDS AP013045.1 1220316 1219060 -3 - 1257 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179) - none -
fig|6666666.229941.peg.1066 CDS AP013045.1 1220570 1220334 -2 - 237 Acyl carrier protein Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229941.peg.1067 CDS AP013045.1 1220586 1221317 3 + 732 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) 5-FCL-like protein;
De Novo Purine Biosynthesis
fig|6666666.229941.peg.1068 CDS AP013045.1 1221409 1222395 1 + 987 ADP-heptose--LPS heptosyltransferase, putative - none -
fig|6666666.229941.peg.1069 CDS AP013045.1 1222392 1223153 3 + 762 hypothetical protein - none -
fig|6666666.229941.peg.1070 CDS AP013045.1 1223319 1226078 3 + 2760 FIG00898139: hypothetical protein - none -
fig|6666666.229941.peg.1071 CDS AP013045.1 1226455 1226339 -1 - 117 hypothetical protein - none -
fig|6666666.229941.peg.1072 CDS AP013045.1 1226507 1227970 2 + 1464 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) Metallocarboxypeptidases (EC 3.4.17.-);
Murein Hydrolases
fig|6666666.229941.peg.1073 CDS AP013045.1 1228005 1229180 3 + 1176 FIG00935709: hypothetical protein - none -
fig|6666666.229941.peg.1074 CDS AP013045.1 1229184 1231049 3 + 1866 Topoisomerase IV subunit B (EC 5.99.1.-) DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.229941.peg.1075 CDS AP013045.1 1231060 1231539 1 + 480 Phosphopantetheine adenylyltransferase (EC 2.7.7.3) CBSS-266117.6.peg.1260;
CBSS-269801.1.peg.1715;
Coenzyme A Biosynthesis
fig|6666666.229941.peg.1076 CDS AP013045.1 1231536 1233134 3 + 1599 Carboxy-terminal processing protease - none -
fig|6666666.229941.peg.1077 CDS AP013045.1 1233173 1234429 2 + 1257 Transporter - none -
fig|6666666.229941.peg.1078 CDS AP013045.1 1234672 1234502 -1 - 171 hypothetical protein - none -
fig|6666666.229941.peg.1079 CDS AP013045.1 1234644 1235708 3 + 1065 Myo-inositol 2-dehydrogenase (EC 1.1.1.18) - none -
fig|6666666.229941.peg.1080 CDS AP013045.1 1235728 1236702 1 + 975 Myosin heavy chain - none -
fig|6666666.229941.peg.1081 CDS AP013045.1 1236710 1238158 2 + 1449 Lipopolysaccharide biosynthesis protein WzxC - none -
fig|6666666.229941.peg.1082 CDS AP013045.1 1238158 1239135 1 + 978 UDP-glucose 4-epimerase (EC 5.1.3.2) Lactose and Galactose Uptake and Utilization;
Rhamnose containing glycans
fig|6666666.229941.peg.1083 CDS AP013045.1 1239141 1240295 3 + 1155 Bacillosamine/Legionaminic acid biosynthesis aminotransferase PglE; 4-keto-6-deoxy-N-Acetyl-D-hexosaminyl-(Lipid carrier) aminotransferase - none -
fig|6666666.229941.peg.1084 CDS AP013045.1 1240299 1240529 3 + 231 putative acyl carrier protein - none -
fig|6666666.229941.peg.1085 CDS AP013045.1 1240529 1241278 2 + 750 3-oxoacyl-[acyl-carrier-protein] reductase - none -
fig|6666666.229941.peg.1086 CDS AP013045.1 1241294 1242295 2 + 1002 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) - none -
fig|6666666.229941.peg.1087 CDS AP013045.1 1242292 1243320 1 + 1029 hypothetical protein - none -
fig|6666666.229941.peg.1088 CDS AP013045.1 1243344 1243550 3 + 207 hypothetical protein - none -
fig|6666666.229941.peg.1089 CDS AP013045.1 1243526 1244350 2 + 825 polysaccharide deacetylase - none -
fig|6666666.229941.peg.1090 CDS AP013045.1 1244979 1245989 3 + 1011 N-acetylneuraminate synthase (EC 2.5.1.56) CMP-N-acetylneuraminate Biosynthesis
fig|6666666.229941.peg.1091 CDS AP013045.1 1245986 1246810 2 + 825 UDP-N-acetylglucosamine 2-epimerase (EC 5.1.3.14) CMP-N-acetylneuraminate Biosynthesis
fig|6666666.229941.peg.1092 CDS AP013045.1 1247014 1247139 1 + 126 hypothetical protein - none -
fig|6666666.229941.peg.1093 CDS AP013045.1 1247140 1248177 1 + 1038 D-glycero-D-manno-heptose 1-phosphate guanosyltransferase - none -
fig|6666666.229941.peg.1094 CDS AP013045.1 1248174 1248866 3 + 693 N-Acetylneuraminate cytidylyltransferase (EC 2.7.7.43) CMP-N-acetylneuraminate Biosynthesis
fig|6666666.229941.peg.1095 CDS AP013045.1 1248856 1250187 1 + 1332 hypothetical protein - none -
fig|6666666.229941.peg.1096 CDS AP013045.1 1250207 1251010 2 + 804 hypothetical protein - none -
fig|6666666.229941.peg.1097 CDS AP013045.1 1251048 1252325 3 + 1278 hypothetical protein - none -
fig|6666666.229941.peg.1098 CDS AP013045.1 1253115 1254263 3 + 1149 TPR/glycosyl transferase domain protein - none -
fig|6666666.229941.peg.1099 CDS AP013045.1 1254268 1256085 1 + 1818 Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229941.peg.1100 CDS AP013045.1 1256289 1257638 3 + 1350 Huntington interacting protein HYPE - none -
fig|6666666.229941.peg.1101 CDS AP013045.1 1258030 1257893 -1 - 138 hypothetical protein - none -
fig|6666666.229941.peg.1102 CDS AP013045.1 1258017 1259138 3 + 1122 hypothetical protein - none -
fig|6666666.229941.peg.1103 CDS AP013045.1 1259306 1260547 2 + 1242 UDP-glucose dehydrogenase (EC 1.1.1.22) - none -
fig|6666666.229941.peg.1104 CDS AP013045.1 1260549 1261709 3 + 1161 UDP-N-acetylglucosamine 2-epimerase (EC 5.1.3.14) CMP-N-acetylneuraminate Biosynthesis
fig|6666666.229941.peg.1105 CDS AP013045.1 1261713 1262921 3 + 1209 Glycosyltransferase (EC 2.4.1.-) - none -
fig|6666666.229941.peg.1106 CDS AP013045.1 1262918 1263637 2 + 720 hypothetical protein - none -
fig|6666666.229941.peg.1107 CDS AP013045.1 1263639 1264901 3 + 1263 Glycosyl transferase, group 1 family protein - none -
fig|6666666.229941.peg.1108 CDS AP013045.1 1264905 1265672 3 + 768 Glycosyl transferase, group 2 family protein - none -
fig|6666666.229941.peg.1109 CDS AP013045.1 1265715 1268177 3 + 2463 hypothetical protein - none -
fig|6666666.229941.peg.1110 CDS AP013045.1 1270997 1268742 -2 - 2256 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) Bacterial RNA-metabolizing Zn-dependent hydrolases
fig|6666666.229941.peg.1111 CDS AP013045.1 1271150 1271031 -2 - 120 hypothetical protein - none -
fig|6666666.229941.peg.1112 CDS AP013045.1 1271116 1272705 1 + 1590 Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3) Dipeptidases (EC 3.4.13.-);
Recycling of Peptidoglycan Amino Acids
fig|6666666.229941.peg.1113 CDS AP013045.1 1272733 1275591 1 + 2859 Excinuclease ABC subunit A paralog in greater Bacteroides group DNA repair, UvrABC system
fig|6666666.229941.peg.1114 CDS AP013045.1 1276549 1275623 -1 - 927 Fructokinase (EC 2.7.1.4) - none -
fig|6666666.229941.peg.1115 CDS AP013045.1 1277169 1276537 -3 - 633 Arabinose 5-phosphate isomerase (EC 5.3.1.13) - none -
fig|6666666.229941.peg.1116 CDS AP013045.1 1277264 1278424 2 + 1161 FIG00897677: hypothetical protein - none -
fig|6666666.229941.peg.1117 CDS AP013045.1 1278616 1279086 1 + 471 Transcription elongation factor GreA Transcription factors bacterial
fig|6666666.229941.peg.1118 CDS AP013045.1 1279100 1279501 2 + 402 HIT family protein - none -
fig|6666666.229941.peg.1119 CDS AP013045.1 1279927 1282062 1 + 2136 Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) Ribonucleotide reduction
fig|6666666.229941.peg.1120 CDS AP013045.1 1282056 1282514 3 + 459 Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) Ribonucleotide reduction
fig|6666666.229941.peg.1121 CDS AP013045.1 1283042 1284151 2 + 1110 FIG00938776: hypothetical protein - none -
fig|6666666.229941.peg.1122 CDS AP013045.1 1284155 1285558 2 + 1404 D-xylose proton-symporter XylE Xylose utilization
fig|6666666.229941.peg.1123 CDS AP013045.1 1285572 1287293 3 + 1722 FIG01127817: hypothetical protein - none -
fig|6666666.229941.peg.1124 CDS AP013045.1 1287531 1290653 3 + 3123 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.229941.peg.1125 CDS AP013045.1 1290668 1292317 2 + 1650 hypothetical protein - none -
fig|6666666.229941.peg.1126 CDS AP013045.1 1292499 1292350 -3 - 150 hypothetical protein - none -
fig|6666666.229941.peg.1127 CDS AP013045.1 1293189 1294259 3 + 1071 hypothetical protein - none -
fig|6666666.229941.peg.1128 CDS AP013045.1 1294588 1294710 1 + 123 hypothetical protein - none -
fig|6666666.229941.peg.1129 CDS AP013045.1 1294822 1295058 1 + 237 hypothetical protein - none -
fig|6666666.229941.peg.1130 CDS AP013045.1 1295222 1296262 2 + 1041 hypothetical protein - none -
fig|6666666.229941.peg.1131 CDS AP013045.1 1296978 1297946 3 + 969 hypothetical protein - none -
fig|6666666.229941.peg.1132 CDS AP013045.1 1298544 1298128 -3 - 417 Uncharacterized protein TM0723 - none -
fig|6666666.229941.peg.1133 CDS AP013045.1 1299367 1298585 -1 - 783 Fe-S OXIDOREDUCTASE (1.8.-.-) - none -
fig|6666666.229941.peg.1134 CDS AP013045.1 1301507 1299438 -2 - 2070 FIG00898434: hypothetical protein - none -
fig|6666666.229941.peg.1135 CDS AP013045.1 1302329 1301520 -2 - 810 hypothetical protein - none -
fig|6666666.229941.peg.1136 CDS AP013045.1 1303706 1302534 -2 - 1173 L-alanine-DL-glutamate epimerase Muconate lactonizing enzyme family;
Recycling of Peptidoglycan Amino Acids
fig|6666666.229941.peg.1137 CDS AP013045.1 1304767 1303685 -1 - 1083 NLP/P60 - none -
fig|6666666.229941.peg.1138 CDS AP013045.1 1304932 1304771 -1 - 162 hypothetical protein - none -
fig|6666666.229941.peg.1139 CDS AP013045.1 1304988 1306508 3 + 1521 Ribosylnicotinamide kinase (EC 2.7.1.22) homolog / Unknown conserved in Flavobacteria - none -
fig|6666666.229941.peg.1140 CDS AP013045.1 1306597 1307064 1 + 468 hypothetical protein - none -
fig|6666666.229941.peg.1141 CDS AP013045.1 1307069 1308406 2 + 1338 Methyltransferase (EC 2.1.1.-) - none -
fig|6666666.229941.peg.1142 CDS AP013045.1 1308437 1310614 2 + 2178 Dipeptidyl peptidase IV - none -
fig|6666666.229941.peg.1143 CDS AP013045.1 1311350 1310736 -2 - 615 Polysaccharide deacetylase - none -
fig|6666666.229941.peg.1144 CDS AP013045.1 1314620 1311357 -2 - 3264 membrane protein, putative - none -
fig|6666666.229941.peg.1145 CDS AP013045.1 1314717 1314866 3 + 150 hypothetical protein - none -
fig|6666666.229941.peg.1146 CDS AP013045.1 1314921 1315355 3 + 435 hypothetical protein - none -
fig|6666666.229941.peg.1147 CDS AP013045.1 1316404 1315430 -1 - 975 Octaprenyl diphosphate synthase (EC 2.5.1.90) / Dimethylallyltransferase (EC 2.5.1.1) / (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10) / Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29) Isoprenoid Biosynthesis;
Isoprenoid Biosynthesis;
Isoprenoid Biosynthesis: Interconversions;
Isoprenoinds for Quinones;
Isoprenoinds for Quinones;
Isoprenoinds for Quinones;
Polyprenyl Diphosphate Biosynthesis;
Polyprenyl Diphosphate Biosynthesis
fig|6666666.229941.peg.1148 CDS AP013045.1 1316494 1319298 1 + 2805 DNA polymerase I (EC 2.7.7.7) DNA Repair Base Excision
fig|6666666.229941.peg.1149 CDS AP013045.1 1319380 1320009 1 + 630 Uracil phosphoribosyltransferase (EC 2.4.2.9) De Novo Pyrimidine Synthesis
fig|6666666.229941.peg.1150 CDS AP013045.1 1320035 1321321 2 + 1287 Uracil permease De Novo Pyrimidine Synthesis
fig|6666666.229941.peg.1151 CDS AP013045.1 1321434 1322228 3 + 795 Thymidylate synthase (EC 2.1.1.45) Folate Biosynthesis
fig|6666666.229941.peg.1152 CDS AP013045.1 1322250 1322741 3 + 492 Dihydrofolate reductase (EC 1.5.1.3) 5-FCL-like protein;
Folate Biosynthesis
fig|6666666.229941.peg.1153 CDS AP013045.1 1322815 1323216 1 + 402 FIG00936528: hypothetical protein - none -
fig|6666666.229941.peg.1154 CDS AP013045.1 1323373 1323254 -1 - 120 hypothetical protein - none -
fig|6666666.229941.peg.1155 CDS AP013045.1 1323365 1324669 2 + 1305 hypothetical protein - none -
fig|6666666.229941.peg.1156 CDS AP013045.1 1324743 1325831 3 + 1089 putative periplasmic protein kinase ArgK and related GTPases of G3E family - none -
fig|6666666.229941.peg.1157 CDS AP013045.1 1326958 1325987 -1 - 972 Glucokinase (EC 2.7.1.2) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis
fig|6666666.229941.peg.1158 CDS AP013045.1 1330169 1327074 -2 - 3096 Exonuclease SbcC DNA repair, bacterial;
Rad50-Mre11 DNA repair cluster
fig|6666666.229941.peg.1159 CDS AP013045.1 1331440 1330232 -1 - 1209 Exonuclease SbcD DNA repair, bacterial;
Rad50-Mre11 DNA repair cluster
fig|6666666.229941.peg.1160 CDS AP013045.1 1333497 1331437 -3 - 2061 Acetyl-CoA synthetase (ADP-forming) alpha and beta chains, putative Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.229941.peg.1161 CDS AP013045.1 1333673 1333551 -2 - 123 hypothetical protein - none -
fig|6666666.229941.peg.1162 CDS AP013045.1 1333962 1334114 3 + 153 TonB-dependent outer membrane receptor - none -
fig|6666666.229941.peg.1163 CDS AP013045.1 1334145 1334609 3 + 465 Possible exported heavy-metal binding protein - none -
fig|6666666.229941.peg.1164 CDS AP013045.1 1334862 1334728 -3 - 135 hypothetical protein - none -
fig|6666666.229941.peg.1165 CDS AP013045.1 1335485 1335078 -2 - 408 hypothetical protein - none -
fig|6666666.229941.peg.1166 CDS AP013045.1 1337266 1335479 -1 - 1788 Putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.229941.peg.1167 CDS AP013045.1 1340763 1337269 -3 - 3495 TonB family protein / TonB-dependent receptor Ton and Tol transport systems
fig|6666666.229941.peg.1168 CDS AP013045.1 1341213 1341350 3 + 138 hypothetical protein - none -
fig|6666666.229941.peg.1169 CDS AP013045.1 1342926 1341757 -3 - 1170 cell surface protein - none -
fig|6666666.229941.peg.1170 CDS AP013045.1 1344546 1346648 3 + 2103 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) Glycogen metabolism
fig|6666666.229941.peg.1171 CDS AP013045.1 1346732 1347511 2 + 780 Mannose-6-phosphate isomerase (EC 5.3.1.8) Mannose Metabolism
fig|6666666.229941.peg.1172 CDS AP013045.1 1347511 1347702 1 + 192 Mannose-6-phosphate isomerase (EC 5.3.1.8) Mannose Metabolism
fig|6666666.229941.peg.1173 CDS AP013045.1 1348725 1347811 -3 - 915 putative chitobiase - none -
fig|6666666.229941.peg.1174 CDS AP013045.1 1350637 1348748 -1 - 1890 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.229941.peg.1175 CDS AP013045.1 1354111 1350665 -1 - 3447 TonB-dependent receptor Ton and Tol transport systems
fig|6666666.229941.peg.1176 CDS AP013045.1 1355437 1354244 -1 - 1194 putative anti-sigma factor - none -
fig|6666666.229941.peg.1177 CDS AP013045.1 1356074 1355538 -2 - 537 RNA polymerase ECF-type sigma factor - none -
fig|6666666.229941.peg.1178 CDS AP013045.1 1356351 1357061 3 + 711 Uridine monophosphate kinase (EC 2.7.4.22) CBSS-312309.3.peg.1965;
Ribosome recycling related cluster
fig|6666666.229941.peg.1179 CDS AP013045.1 1357246 1357647 1 + 402 Methylmalonyl-CoA epimerase (EC 5.1.99.1) Propionyl-CoA to Succinyl-CoA Module
fig|6666666.229941.peg.1180 CDS AP013045.1 1357684 1359237 1 + 1554 Methylmalonyl-CoA decarboxylase, alpha chain (EC 4.1.1.41) Na+ translocating decarboxylases and related biotin-dependent enzymes;
Propionyl-CoA to Succinyl-CoA Module
fig|6666666.229941.peg.1181 CDS AP013045.1 1359259 1360143 1 + 885 Membrane protein associated with methylmalonyl-CoA decarboxylase Na+ translocating decarboxylases and related biotin-dependent enzymes
fig|6666666.229941.peg.1182 CDS AP013045.1 1360190 1360621 2 + 432 Biotin carboxyl carrier protein of methylmalonyl-CoA decarboxylase Na+ translocating decarboxylases and related biotin-dependent enzymes
fig|6666666.229941.peg.1183 CDS AP013045.1 1360630 1361793 1 + 1164 Methylmalonyl-CoA decarboxylase, beta chain (EC 4.1.1.41) Na+ translocating decarboxylases and related biotin-dependent enzymes;
Propionyl-CoA to Succinyl-CoA Module
fig|6666666.229941.peg.1184 CDS AP013045.1 1362558 1362037 -3 - 522 Transcriptional regulator, AsnC family - none -
fig|6666666.229941.peg.1185 CDS AP013045.1 1363179 1362712 -3 - 468 FIG00935740: hypothetical protein - none -
fig|6666666.229941.peg.1186 CDS AP013045.1 1363788 1363195 -3 - 594 Biopolymer transport exbD protein. - none -
fig|6666666.229941.peg.1187 CDS AP013045.1 1364204 1363809 -2 - 396 hypothetical protein - none -
fig|6666666.229941.peg.1188 CDS AP013045.1 1365035 1364292 -2 - 744 MotA/TolQ/ExbB proton channel family protein Ton and Tol transport systems
fig|6666666.229941.peg.1189 CDS AP013045.1 1366178 1365375 -2 - 804 Putative deoxyribonuclease YcfH YcfH
fig|6666666.229941.peg.1190 CDS AP013045.1 1367175 1366192 -3 - 984 Dimethylallyltransferase (EC 2.5.1.1) / (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10) / Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29) Isoprenoid Biosynthesis;
Isoprenoid Biosynthesis;
Isoprenoid Biosynthesis: Interconversions;
Isoprenoinds for Quinones;
Isoprenoinds for Quinones;
Polyprenyl Diphosphate Biosynthesis
fig|6666666.229941.peg.1191 CDS AP013045.1 1367964 1367266 -3 - 699 Ferric siderophore transport system, periplasmic binding protein TonB Hemin transport system;
Ton and Tol transport systems
fig|6666666.229941.peg.1192 CDS AP013045.1 1368169 1369221 1 + 1053 low affinity penicillin binding protein - none -
fig|6666666.229941.peg.1193 CDS AP013045.1 1369250 1369939 2 + 690 Cytidylate kinase (EC 2.7.4.25) - none -
fig|6666666.229941.peg.1194 CDS AP013045.1 1369943 1370809 2 + 867 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.229941.peg.1195 CDS AP013045.1 1370954 1370799 -2 - 156 hypothetical protein - none -
fig|6666666.229941.peg.1196 CDS AP013045.1 1371643 1371023 -1 - 621 Transporter, LysE family - none -
fig|6666666.229941.peg.1197 CDS AP013045.1 1373549 1371732 -2 - 1818 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) - none -
fig|6666666.229941.peg.1198 CDS AP013045.1 1373803 1374792 1 + 990 COG0500: SAM-dependent methyltransferases - none -
fig|6666666.229941.peg.1199 CDS AP013045.1 1377152 1374843 -2 - 2310 Immunoreactive 84kD antigen PG93 - none -
fig|6666666.229941.peg.1200 CDS AP013045.1 1377803 1377225 -2 - 579 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) Heat shock dnaK gene cluster extended;
Housecleaning nucleoside triphosphate pyrophosphatases
fig|6666666.229941.peg.1201 CDS AP013045.1 1378767 1377892 -3 - 876 putative transporter - none -
fig|6666666.229941.peg.1202 CDS AP013045.1 1381601 1378764 -2 - 2838 Leucyl-tRNA synthetase (EC 6.1.1.4) tRNA aminoacylation, Leu
fig|6666666.229941.peg.1203 CDS AP013045.1 1381904 1382656 2 + 753 hypothetical protein - none -
fig|6666666.229941.peg.1204 CDS AP013045.1 1383044 1382649 -2 - 396 Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly CBSS-56780.10.peg.1536;
Glycyl-tRNA synthetase containing cluster;
tRNA-methylthiotransferase containing cluster
fig|6666666.229941.peg.1205 CDS AP013045.1 1384300 1383071 -1 - 1230 Fused spore maturation proteins A and B Spore Core Dehydration
fig|6666666.229941.peg.1206 CDS AP013045.1 1384398 1385369 3 + 972 Glyoxylate reductase (EC 1.1.1.79) / Glyoxylate reductase (EC 1.1.1.26) / Hydroxypyruvate reductase (EC 1.1.1.81) Glycolate, glyoxylate interconversions;
Glycolate, glyoxylate interconversions;
Glycolate, glyoxylate interconversions
fig|6666666.229941.peg.1207 CDS AP013045.1 1385366 1386082 2 + 717 probable DNA alkylation repair enzyme - none -
fig|6666666.229941.peg.1208 CDS AP013045.1 1387799 1386207 -2 - 1593 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229941.peg.1209 CDS AP013045.1 1388466 1388026 -3 - 441 hypothetical protein - none -
fig|6666666.229941.peg.1210 CDS AP013045.1 1389721 1388489 -1 - 1233 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229941.peg.1211 CDS AP013045.1 1389954 1391645 3 + 1692 Immunoreactive 53 kDa antigen PG123 - none -
fig|6666666.229941.peg.1212 CDS AP013045.1 1391739 1392299 3 + 561 hypothetical protein - none -
fig|6666666.229941.peg.1213 CDS AP013045.1 1392332 1392445 2 + 114 hypothetical protein - none -
fig|6666666.229941.peg.1214 CDS AP013045.1 1393087 1394121 1 + 1035 Putative DNA-binding protein in cluster with Type I restriction-modification system - none -
fig|6666666.229941.peg.1215 CDS AP013045.1 1394317 1394198 -1 - 120 hypothetical protein - none -
fig|6666666.229941.peg.1216 CDS AP013045.1 1394366 1394617 2 + 252 hypothetical protein - none -
fig|6666666.229941.peg.1217 CDS AP013045.1 1394833 1394666 -1 - 168 hypothetical protein - none -
fig|6666666.229941.peg.1218 CDS AP013045.1 1394797 1396599 1 + 1803 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) - none -
fig|6666666.229941.peg.1219 CDS AP013045.1 1396794 1398926 3 + 2133 Methionyl-tRNA synthetase (EC 6.1.1.10) tRNA aminoacylation, Met
fig|6666666.229941.peg.1220 CDS AP013045.1 1398926 1400059 2 + 1134 Pleiotropic regulatory protein - none -
fig|6666666.229941.peg.1221 CDS AP013045.1 1400475 1400053 -3 - 423 TsaE protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA YjeE
fig|6666666.229941.peg.1222 CDS AP013045.1 1402016 1400472 -2 - 1545 Response regulator - none -
fig|6666666.229941.peg.1223 CDS AP013045.1 1402549 1402061 -1 - 489 hypothetical protein - none -
fig|6666666.229941.peg.1224 CDS AP013045.1 1403069 1402551 -2 - 519 hypothetical protein - none -
fig|6666666.229941.peg.1225 CDS AP013045.1 1403489 1403073 -2 - 417 RNA polymerase ECF-type sigma factor - none -
fig|6666666.229941.peg.1226 CDS AP013045.1 1404029 1403574 -2 - 456 hypothetical protein - none -
fig|6666666.229941.peg.1227 CDS AP013045.1 1404028 1404186 1 + 159 hypothetical protein - none -
fig|6666666.229941.peg.1228 CDS AP013045.1 1404289 1404158 -1 - 132 NAD-dependent protein deacetylase of SIR2 family Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate;
Redox-dependent regulation of nucleus processes
fig|6666666.229941.peg.1229 CDS AP013045.1 1404512 1404625 2 + 114 hypothetical protein - none -
fig|6666666.229941.peg.1230 CDS AP013045.1 1404850 1405743 1 + 894 FIG00937610: hypothetical protein - none -
fig|6666666.229941.peg.1231 CDS AP013045.1 1405748 1406341 2 + 594 Phosphoserine phosphatase (EC 3.1.3.3) Glycine and Serine Utilization;
Serine Biosynthesis;
Serine Biosynthesis
fig|6666666.229941.peg.1232 CDS AP013045.1 1406439 1406582 3 + 144 hypothetical protein - none -
fig|6666666.229941.peg.1233 CDS AP013045.1 1406626 1408278 1 + 1653 hypothetical protein - none -
fig|6666666.229941.peg.1234 CDS AP013045.1 1408572 1408736 3 + 165 hypothetical protein - none -
fig|6666666.229941.peg.1235 CDS AP013045.1 1408772 1410070 2 + 1299 ATPase component BioM of energizing module of biotin ECF transporter - none -
fig|6666666.229941.peg.1236 CDS AP013045.1 1410877 1410185 -1 - 693 NAD-dependent protein deacetylase of SIR2 family Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate;
Redox-dependent regulation of nucleus processes
fig|6666666.229941.peg.1237 CDS AP013045.1 1410894 1411028 3 + 135 hypothetical protein - none -
fig|6666666.229941.peg.1238 CDS AP013045.1 1412037 1411018 -3 - 1020 Bll2647 protein - none -
fig|6666666.229941.peg.1239 CDS AP013045.1 1412627 1412034 -2 - 594 Transcriptional regulator, TetR family - none -
fig|6666666.229941.peg.1240 CDS AP013045.1 1412774 1413457 2 + 684 hypothetical protein - none -
fig|6666666.229941.peg.1241 CDS AP013045.1 1413559 1414599 1 + 1041 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) Cobalamin synthesis
fig|6666666.229941.peg.1242 CDS AP013045.1 1414602 1415393 3 + 792 Cobalamin synthase - none -
fig|6666666.229941.peg.1243 CDS AP013045.1 1415378 1415905 2 + 528 Alpha-ribazole-5@1-phosphate phosphatase (EC 3.1.3.73) Cobalamin synthesis;
Phosphoglycerate mutase protein family
fig|6666666.229941.peg.1244 CDS AP013045.1 1417018 1415957 -1 - 1062 ADP-heptose:LPS heptosyltransferase II - none -
fig|6666666.229941.peg.1245 CDS AP013045.1 1417642 1417028 -1 - 615 FIG00939976: hypothetical protein - none -
fig|6666666.229941.peg.1246 CDS AP013045.1 1417866 1417720 -3 - 147 hypothetical protein - none -
fig|6666666.229941.peg.1247 CDS AP013045.1 1419598 1418939 -1 - 660 Transcriptional regulatory protein rprY - none -
fig|6666666.229941.peg.1248 CDS AP013045.1 1421076 1419619 -3 - 1458 Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3) PhoR-PhoB two-component regulatory system;
Phosphate metabolism
fig|6666666.229941.peg.1249 CDS AP013045.1 1421267 1422133 2 + 867 hypothetical protein - none -
fig|6666666.229941.peg.1250 CDS AP013045.1 1422385 1424733 1 + 2349 hypothetical protein - none -
fig|6666666.229941.peg.1251 CDS AP013045.1 1424852 1424718 -2 - 135 hypothetical protein - none -
fig|6666666.229941.peg.1252 CDS AP013045.1 1425830 1424859 -2 - 972 putative anti-sigma factor - none -
fig|6666666.229941.peg.1253 CDS AP013045.1 1426482 1425904 -3 - 579 RNA polymerase ECF-type sigma factor - none -
fig|6666666.229941.peg.1254 CDS AP013045.1 1429338 1426567 -3 - 2772 probable acylaminoacyl-peptidase - none -
fig|6666666.229941.peg.1255 CDS AP013045.1 1429738 1430742 1 + 1005 Phage tail fibers Phage tail fiber proteins
fig|6666666.229941.peg.1256 CDS AP013045.1 1430752 1431249 1 + 498 hypothetical protein - none -
fig|6666666.229941.peg.1257 CDS AP013045.1 1431364 1431861 1 + 498 hypothetical protein - none -
fig|6666666.229941.peg.1258 CDS AP013045.1 1431976 1432473 1 + 498 hypothetical protein - none -
fig|6666666.229941.peg.1259 CDS AP013045.1 1432586 1434253 2 + 1668 hypothetical protein - none -
fig|6666666.229941.peg.1260 CDS AP013045.1 1434499 1434843 1 + 345 hypothetical protein - none -
fig|6666666.229941.peg.1261 CDS AP013045.1 1434920 1435819 2 + 900 hypothetical protein - none -
fig|6666666.229941.peg.1262 CDS AP013045.1 1437011 1436040 -2 - 972 hypothetical protein - none -
fig|6666666.229941.peg.1263 CDS AP013045.1 1437577 1437008 -1 - 570 hypothetical protein - none -
fig|6666666.229941.peg.1264 CDS AP013045.1 1438116 1437574 -3 - 543 RNA polymerase sigma factor SigW Transcription initiation, bacterial sigma factors
fig|6666666.229941.peg.1265 CDS AP013045.1 1438336 1438758 1 + 423 hypothetical protein - none -
fig|6666666.229941.peg.1266 CDS AP013045.1 1440336 1438792 -3 - 1545 putative auxin-regulated protein - none -
fig|6666666.229941.peg.1267 CDS AP013045.1 1441576 1440380 -1 - 1197 hypothetical protein - none -
fig|6666666.229941.peg.1268 CDS AP013045.1 1441808 1441671 -2 - 138 hypothetical protein - none -
fig|6666666.229941.peg.1269 CDS AP013045.1 1441927 1442790 1 + 864 hypothetical protein - none -
fig|6666666.229941.peg.1270 CDS AP013045.1 1442784 1443716 3 + 933 Aspartate carbamoyltransferase (EC 2.1.3.2) De Novo Pyrimidine Synthesis
fig|6666666.229941.peg.1271 CDS AP013045.1 1443729 1444196 3 + 468 Aspartate carbamoyltransferase regulatory chain (PyrI) De Novo Pyrimidine Synthesis
fig|6666666.229941.peg.1272 CDS AP013045.1 1444245 1444811 3 + 567 Flavoredoxin - none -
fig|6666666.229941.peg.1273 CDS AP013045.1 1444816 1445541 1 + 726 hypothetical protein - none -
fig|6666666.229941.peg.1274 CDS AP013045.1 1449935 1445565 -2 - 4371 FIG00898933: hypothetical protein - none -
fig|6666666.229941.peg.1275 CDS AP013045.1 1450127 1451155 2 + 1029 TsaD/Kae1/Qri7 protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Macromolecular synthesis operon;
YgjD and YeaZ
fig|6666666.229941.peg.1276 CDS AP013045.1 1451176 1452438 1 + 1263 Molybdopterin binding motif, CinA N-terminal domain / C-terminal domain of CinA type S NAD and NADP cofactor biosynthesis global;
NAD and NADP cofactor biosynthesis global;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin, FMN and FAD metabolism in plants
fig|6666666.229941.peg.1277 CDS AP013045.1 1452556 1453437 1 + 882 Homoserine O-succinyltransferase (EC 2.3.1.46) - none -
fig|6666666.229941.peg.1278 CDS AP013045.1 1453438 1455264 1 + 1827 Putative collagenase - none -
fig|6666666.229941.peg.1279 CDS AP013045.1 1458989 1455300 -2 - 3690 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) - none -
fig|6666666.229941.peg.1280 CDS AP013045.1 1459071 1461365 3 + 2295 Na(+)/H(+) antiporter - none -
fig|6666666.229941.peg.1281 CDS AP013045.1 1463245 1462967 -1 - 279 YafQ toxin protein - none -
fig|6666666.229941.peg.1282 CDS AP013045.1 1463445 1463245 -3 - 201 hypothetical protein - none -
fig|6666666.229941.peg.1283 CDS AP013045.1 1464017 1463793 -2 - 225 hypothetical protein - none -
fig|6666666.229941.peg.1284 CDS AP013045.1 1467717 1464256 -3 - 3462 Cell surface protein - none -
fig|6666666.229941.peg.1285 CDS AP013045.1 1468216 1468422 1 + 207 hypothetical protein - none -
fig|6666666.229941.peg.1286 CDS AP013045.1 1469577 1469353 -3 - 225 hypothetical protein - none -
fig|6666666.229941.peg.1287 CDS AP013045.1 1470993 1470229 -3 - 765 tRNA (guanosine(18)-2@1-O)-methyltransferase (EC 2.1.1.34) RNA methylation;
tRNA modification Bacteria
fig|6666666.229941.peg.1288 CDS AP013045.1 1471144 1473420 1 + 2277 FIG00898528: hypothetical protein - none -
fig|6666666.229941.peg.1289 CDS AP013045.1 1473515 1474366 2 + 852 hypothetical protein - none -
fig|6666666.229941.peg.1290 CDS AP013045.1 1475736 1474663 -3 - 1074 3-isopropylmalate dehydrogenase (EC 1.1.1.85) Branched-Chain Amino Acid Biosynthesis;
Leucine Biosynthesis
fig|6666666.229941.peg.1291 CDS AP013045.1 1477377 1475797 -3 - 1581 (R)-citramalate synthase (EC 2.3.1.182) Branched-Chain Amino Acid Biosynthesis
fig|6666666.229941.peg.1292 CDS AP013045.1 1478065 1477472 -1 - 594 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) Branched-Chain Amino Acid Biosynthesis;
Leucine Biosynthesis
fig|6666666.229941.peg.1293 CDS AP013045.1 1478532 1478071 -3 - 462 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit - none -
fig|6666666.229941.peg.1294 CDS AP013045.1 1480009 1478573 -1 - 1437 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) Branched-Chain Amino Acid Biosynthesis;
Leucine Biosynthesis
fig|6666666.229941.peg.1295 CDS AP013045.1 1481556 1480069 -3 - 1488 2-isopropylmalate synthase (EC 2.3.3.13) Branched-Chain Amino Acid Biosynthesis;
Leucine Biosynthesis
fig|6666666.229941.peg.1296 CDS AP013045.1 1481609 1481875 2 + 267 hypothetical protein - none -
fig|6666666.229941.peg.1297 CDS AP013045.1 1482189 1484291 3 + 2103 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) Glycogen metabolism
fig|6666666.229941.peg.1298 CDS AP013045.1 1484375 1485346 2 + 972 Mannose-6-phosphate isomerase (EC 5.3.1.8) Mannose Metabolism
fig|6666666.229941.peg.1299 CDS AP013045.1 1485489 1486385 3 + 897 ABC transporter ATP-binding protein - none -
fig|6666666.229941.peg.1300 CDS AP013045.1 1486410 1489769 3 + 3360 FIG00898757: hypothetical protein - none -
fig|6666666.229941.peg.1301 CDS AP013045.1 1489806 1491323 3 + 1518 putative outer membrane lipoprotein silC precursor - none -
fig|6666666.229941.peg.1302 CDS AP013045.1 1491353 1492420 2 + 1068 Probable Co/Zn/Cd efflux system membrane fusion protein Cobalt-zinc-cadmium resistance
fig|6666666.229941.peg.1303 CDS AP013045.1 1492472 1495558 2 + 3087 RND multidrug efflux transporter; Acriflavin resistance protein Multidrug Resistance Efflux Pumps
fig|6666666.229941.peg.1304 CDS AP013045.1 1495555 1500240 1 + 4686 FIG00898163: hypothetical protein - none -
fig|6666666.229941.peg.1305 CDS AP013045.1 1500244 1500954 1 + 711 FIG00896664: hypothetical protein - none -
fig|6666666.229941.peg.1306 CDS AP013045.1 1501282 1501028 -1 - 255 hypothetical protein - none -
fig|6666666.229941.peg.1307 CDS AP013045.1 1501497 1501330 -3 - 168 hypothetical protein - none -
fig|6666666.229941.peg.1308 CDS AP013045.1 1502318 1501560 -2 - 759 Domain often clustered or fused with uracil-DNA glycosylase Uracil-DNA glycosylase
fig|6666666.229941.peg.1309 CDS AP013045.1 1503600 1502332 -3 - 1269 Biotin synthase related domain containing protein - none -
fig|6666666.229941.peg.1310 CDS AP013045.1 1504735 1503710 -1 - 1026 Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11) / Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) Peptide methionine sulfoxide reductase;
Peptide methionine sulfoxide reductase
fig|6666666.229941.peg.1311 CDS AP013045.1 1506230 1504869 -2 - 1362 Tryptophan synthase beta chain like (EC 4.2.1.20) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.
fig|6666666.229941.peg.1312 CDS AP013045.1 1506403 1506227 -1 - 177 hypothetical protein - none -
fig|6666666.229941.peg.1313 CDS AP013045.1 1508435 1506696 -2 - 1740 UPF0141 membrane protein YijP possibly required for phosphoethanolamine modification of lipopolysaccharide - none -
fig|6666666.229941.peg.1314 CDS AP013045.1 1509554 1508442 -2 - 1113 Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake CBSS-272943.3.peg.1367;
Conserved gene cluster associated with Met-tRNA formyltransferase
fig|6666666.229941.peg.1315 CDS AP013045.1 1509970 1509578 -1 - 393 4-hydroxybenzoyl-CoA thioesterase family active site Ton and Tol transport systems
fig|6666666.229941.peg.1316 CDS AP013045.1 1510014 1510163 3 + 150 hypothetical protein - none -
fig|6666666.229941.peg.1317 CDS AP013045.1 1510172 1510369 2 + 198 hypothetical protein - none -
fig|6666666.229941.peg.1318 CDS AP013045.1 1510732 1511013 1 + 282 hypothetical protein - none -
fig|6666666.229941.peg.1319 CDS AP013045.1 1511198 1511833 2 + 636 hypothetical protein - none -
fig|6666666.229941.peg.1320 CDS AP013045.1 1512340 1511888 -1 - 453 hypothetical protein - none -
fig|6666666.229941.peg.1321 CDS AP013045.1 1512395 1512634 2 + 240 hypothetical protein - none -
fig|6666666.229941.peg.1322 CDS AP013045.1 1513275 1512601 -3 - 675 hypothetical protein - none -
fig|6666666.229941.peg.1323 CDS AP013045.1 1514718 1513339 -3 - 1380 FIG00899328: hypothetical protein - none -
fig|6666666.229941.peg.1324 CDS AP013045.1 1517699 1514757 -2 - 2943 hypothetical protein - none -
fig|6666666.229941.peg.1325 CDS AP013045.1 1518646 1517714 -1 - 933 Quinolinate synthetase (EC 2.5.1.72) Mycobacterium virulence operon possibly involved in quinolinate biosynthesis;
NAD and NADP cofactor biosynthesis global
fig|6666666.229941.peg.1326 CDS AP013045.1 1518725 1518955 2 + 231 hypothetical protein - none -
fig|6666666.229941.peg.1327 CDS AP013045.1 1518999 1520120 3 + 1122 Aldose 1-epimerase (EC 5.1.3.3) Lactose and Galactose Uptake and Utilization;
Maltose and Maltodextrin Utilization
fig|6666666.229941.peg.1328 CDS AP013045.1 1521796 1520438 -1 - 1359 Putative sodium-dependent transporter - none -
fig|6666666.229941.peg.1329 CDS AP013045.1 1522503 1521793 -3 - 711 Lipoprotein releasing system ATP-binding protein LolD Lipoprotein sorting system
fig|6666666.229941.peg.1330 CDS AP013045.1 1522403 1522567 2 + 165 hypothetical protein - none -
fig|6666666.229941.peg.1331 CDS AP013045.1 1522580 1523191 2 + 612 hypothetical protein - none -
fig|6666666.229941.peg.1332 CDS AP013045.1 1524481 1523195 -1 - 1287 Glucose-1-phosphatase precursor (EC 3.1.3.10) - none -
fig|6666666.229941.peg.1333 CDS AP013045.1 1525678 1524530 -1 - 1149 Phosphate-specific outer membrane porin OprP; Pyrophosphate-specific outer membrane porin OprO Phosphate metabolism;
Phosphate metabolism
fig|6666666.229941.peg.1334 CDS AP013045.1 1526471 1525692 -2 - 780 COG0671: Membrane-associated phospholipid phosphatase - none -
fig|6666666.229941.peg.1335 CDS AP013045.1 1526627 1526484 -2 - 144 hypothetical protein - none -
fig|6666666.229941.peg.1336 CDS AP013045.1 1526811 1527761 3 + 951 hypothetical protein - none -
fig|6666666.229941.peg.1337 CDS AP013045.1 1528766 1527858 -2 - 909 S1 RNA binding domain - none -
fig|6666666.229941.peg.1338 CDS AP013045.1 1531432 1528943 -1 - 2490 putative TonB-dependent receptor - none -
fig|6666666.229941.peg.1339 CDS AP013045.1 1532593 1531757 -1 - 837 hypothetical protein - none -
fig|6666666.229941.peg.1340 CDS AP013045.1 1534479 1532980 -3 - 1500 Histidine ammonia-lyase (EC 4.3.1.3) Histidine Degradation
fig|6666666.229941.peg.1341 CDS AP013045.1 1535123 1534494 -2 - 630 Formiminotetrahydrofolate cyclodeaminase (EC 4.3.1.4) 5-FCL-like protein;
One-carbon metabolism by tetrahydropterines
fig|6666666.229941.peg.1342 CDS AP013045.1 1535420 1535193 -2 - 228 Conserved protein - none -
fig|6666666.229941.peg.1343 CDS AP013045.1 1536890 1535652 -2 - 1239 Imidazolonepropionase (EC 3.5.2.7) Histidine Degradation
fig|6666666.229941.peg.1344 CDS AP013045.1 1537845 1536949 -3 - 897 Glutamate formiminotransferase (EC 2.1.2.5) @ Glutamate formyltransferase 5-FCL-like protein;
Histidine Degradation
fig|6666666.229941.peg.1345 CDS AP013045.1 1538265 1537957 -3 - 309 hypothetical protein - none -
fig|6666666.229941.peg.1346 CDS AP013045.1 1539519 1538563 -3 - 957 hypothetical protein - none -
fig|6666666.229941.peg.1347 CDS AP013045.1 1541566 1539578 -1 - 1989 Urocanate hydratase (EC 4.2.1.49) Histidine Degradation
fig|6666666.229941.peg.1348 CDS AP013045.1 1543091 1541685 -2 - 1407 oxidoreductase, Gfo/Idh/MocA family - none -
fig|6666666.229941.peg.1349 CDS AP013045.1 1543488 1543219 -3 - 270 hypothetical protein - none -
fig|6666666.229941.peg.1350 CDS AP013045.1 1543460 1544803 2 + 1344 Choline-sulfatase (EC 3.1.6.6) - none -
fig|6666666.229941.peg.1351 CDS AP013045.1 1544901 1545290 3 + 390 hypothetical protein - none -
fig|6666666.229941.peg.1352 CDS AP013045.1 1546529 1545696 -2 - 834 Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-) Lipoprotein Biosynthesis
fig|6666666.229941.peg.1353 CDS AP013045.1 1546667 1547557 2 + 891 Mobile element protein - none -
fig|6666666.229941.peg.1354 CDS AP013045.1 1548069 1548302 3 + 234 Mobile element protein - none -
fig|6666666.229941.peg.1355 CDS AP013045.1 1549330 1548278 -1 - 1053 3-dehydroquinate synthase (EC 4.2.3.4) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229941.peg.1356 CDS AP013045.1 1551967 1549337 -1 - 2631 Alanyl-tRNA synthetase (EC 6.1.1.7) CBSS-226186.1.peg.3994;
Cluster containing Alanyl-tRNA synthetase;
tRNA aminoacylation, Ala
fig|6666666.229941.peg.1357 CDS AP013045.1 1552066 1553049 1 + 984 Peptidase, family M23 (EC 3.4.24.-) CBSS-226186.1.peg.3994
fig|6666666.229941.peg.1358 CDS AP013045.1 1553057 1553419 2 + 363 Transcriptional regulator - none -
fig|6666666.229941.peg.1359 CDS AP013045.1 1553424 1554422 3 + 999 Sodium-calcium exchanger - none -
fig|6666666.229941.peg.1360 CDS AP013045.1 1554495 1554623 3 + 129 hypothetical protein - none -
fig|6666666.229941.peg.1361 CDS AP013045.1 1554750 1554875 3 + 126 hypothetical protein - none -
fig|6666666.229941.peg.1362 CDS AP013045.1 1557630 1555375 -3 - 2256 GTP pyrophosphokinase (EC 2.7.6.5) / Guanosine-3@1,5@1-bis(diphosphate) 3@1-pyrophosphohydrolase (EC 3.1.7.2) Stringent Response, (p)ppGpp metabolism
fig|6666666.229941.peg.1363 CDS AP013045.1 1559239 1557644 -1 - 1596 Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-) Murein Hydrolases
fig|6666666.229941.peg.1364 CDS AP013045.1 1559921 1559244 -2 - 678 FIG00937393: hypothetical protein - none -
fig|6666666.229941.peg.1365 CDS AP013045.1 1560865 1559963 -1 - 903 Chromosome (plasmid) partitioning protein ParB Bacterial Cytoskeleton;
Cell Division Subsystem including YidCD;
RNA modification and chromosome partitioning cluster
fig|6666666.229941.peg.1366 CDS AP013045.1 1561633 1560869 -1 - 765 Chromosome (plasmid) partitioning protein ParA Bacterial Cell Division;
Bacterial Cytoskeleton;
Cell Division Subsystem including YidCD;
RNA modification and chromosome partitioning cluster
fig|6666666.229941.peg.1367 CDS AP013045.1 1562937 1561921 -3 - 1017 Carboxyl-terminal protease-related protein - none -
fig|6666666.229941.peg.1368 CDS AP013045.1 1563774 1562941 -3 - 834 FIG00415187: hypothetical protein - none -
fig|6666666.229941.peg.1369 CDS AP013045.1 1566479 1563795 -2 - 2685 Topoisomerase IV subunit A (EC 5.99.1.-) DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.229941.peg.1370 CDS AP013045.1 1566619 1566858 1 + 240 putative transposase_11 DDE family protein - none -
fig|6666666.229941.peg.1371 CDS AP013045.1 1567034 1567828 2 + 795 hypothetical protein - none -
fig|6666666.229941.peg.1372 CDS AP013045.1 1568221 1568985 1 + 765 hypothetical protein - none -
fig|6666666.229941.peg.1373 CDS AP013045.1 1568997 1571015 3 + 2019 TonB-dependent receptor, putative - none -
fig|6666666.229941.peg.1374 CDS AP013045.1 1571012 1572169 2 + 1158 hypothetical protein - none -
fig|6666666.229941.peg.1375 CDS AP013045.1 1572186 1573142 3 + 957 hypothetical protein - none -
fig|6666666.229941.peg.1376 CDS AP013045.1 1573461 1574210 3 + 750 NADH oxidase - none -
fig|6666666.229941.peg.1377 CDS AP013045.1 1574217 1575086 3 + 870 ABC transporter, ATP-binding protein - none -
fig|6666666.229941.peg.1378 CDS AP013045.1 1575092 1576306 2 + 1215 conserved hypothetical protein [KO:K01992] - none -
fig|6666666.229941.peg.1379 CDS AP013045.1 1576833 1578380 3 + 1548 Histidine ammonia-lyase (EC 4.3.1.3) Histidine Degradation
fig|6666666.229941.peg.1380 CDS AP013045.1 1578384 1578755 3 + 372 hypothetical protein - none -
fig|6666666.229941.peg.1381 CDS AP013045.1 1578768 1580087 3 + 1320 Phenylacetate-coenzyme A ligase (EC 6.2.1.30); Coenzyme F390 synthetase Aromatic amino acid interconversions with aryl acids
fig|6666666.229941.peg.1382 CDS AP013045.1 1580077 1581201 1 + 1125 FIG00937152: hypothetical protein - none -
fig|6666666.229941.peg.1383 CDS AP013045.1 1581298 1584780 1 + 3483 FIG00936378: hypothetical protein - none -
fig|6666666.229941.peg.1384 CDS AP013045.1 1585291 1588605 1 + 3315 hemolysin-type calcium-binding region protein - none -
fig|6666666.229941.peg.1385 CDS AP013045.1 1590037 1588754 -1 - 1284 Amino acid permease family protein - none -
fig|6666666.229941.peg.1386 CDS AP013045.1 1590914 1590048 -2 - 867 hypothetical protein - none -
fig|6666666.229941.peg.1387 CDS AP013045.1 1592512 1590956 -1 - 1557 hypothetical protein - none -
fig|6666666.229941.peg.1388 CDS AP013045.1 1593773 1592538 -2 - 1236 FIG00405513: hypothetical protein - none -
fig|6666666.229941.peg.1389 CDS AP013045.1 1596645 1593787 -3 - 2859 putative outer membrane receptor - none -
fig|6666666.229941.peg.1390 CDS AP013045.1 1596867 1597751 3 + 885 UPF0028 protein YchK Broadly distributed proteins not in subsystems
fig|6666666.229941.peg.1391 CDS AP013045.1 1597760 1599463 2 + 1704 Alpha-amylase (EC 3.2.1.1) Maltose and Maltodextrin Utilization
fig|6666666.229941.peg.1392 CDS AP013045.1 1599565 1600509 1 + 945 Ribose-phosphate pyrophosphokinase (EC 2.7.6.1) A Gammaproteobacteria Cluster Relating to Translation;
De Novo Purine Biosynthesis;
Pentose phosphate pathway
fig|6666666.229941.peg.1393 CDS AP013045.1 1600598 1600939 2 + 342 hypothetical protein - none -
fig|6666666.229941.peg.1394 CDS AP013045.1 1602297 1600960 -3 - 1338 tRNA-specific 2-thiouridylase MnmA RNA methylation
fig|6666666.229941.peg.1395 CDS AP013045.1 1602459 1603076 3 + 618 transcriptional regulator, tetR family - none -
fig|6666666.229941.peg.1396 CDS AP013045.1 1603287 1605635 3 + 2349 Predicted exporter of the RND superfamily - none -
fig|6666666.229941.peg.1397 CDS AP013045.1 1605735 1608077 3 + 2343 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins Ton and Tol transport systems
fig|6666666.229941.peg.1398 CDS AP013045.1 1608140 1609354 2 + 1215 conserved hypothetical lipoprotein - none -
fig|6666666.229941.peg.1399 CDS AP013045.1 1609854 1609513 -3 - 342 hypothetical protein - none -
fig|6666666.229941.peg.1400 CDS AP013045.1 1609864 1610448 1 + 585 Bll4887 protein - none -
fig|6666666.229941.peg.1401 CDS AP013045.1 1610487 1610609 3 + 123 hypothetical protein - none -
fig|6666666.229941.peg.1402 CDS AP013045.1 1610622 1612067 3 + 1446 Probable dipeptidase (EC 3.4.-.-) - none -
fig|6666666.229941.peg.1403 CDS AP013045.1 1612091 1612246 2 + 156 hypothetical protein - none -
fig|6666666.229941.peg.1404 CDS AP013045.1 1612316 1613044 2 + 729 FIG002003: Protein YdjA - none -
fig|6666666.229941.peg.1405 CDS AP013045.1 1613084 1613872 2 + 789 FIG00935715: hypothetical protein - none -
fig|6666666.229941.peg.1406 CDS AP013045.1 1614338 1614553 2 + 216 hypothetical protein - none -
fig|6666666.229941.peg.1407 CDS AP013045.1 1614663 1615787 3 + 1125 FIG00936125: hypothetical protein - none -
fig|6666666.229941.peg.1408 CDS AP013045.1 1615987 1616625 1 + 639 hypothetical protein - none -
fig|6666666.229941.peg.1409 CDS AP013045.1 1616635 1617198 1 + 564 FIG00939884: hypothetical protein - none -
fig|6666666.229941.peg.1410 CDS AP013045.1 1617536 1619881 2 + 2346 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins Ton and Tol transport systems
fig|6666666.229941.peg.1411 CDS AP013045.1 1619992 1621161 1 + 1170 conserved hypothetical lipoprotein - none -
fig|6666666.229941.peg.1412 CDS AP013045.1 1621281 1622102 3 + 822 Metal transporter, ZIP family - none -
fig|6666666.229941.peg.1413 CDS AP013045.1 1622220 1622795 3 + 576 hypothetical protein - none -
fig|6666666.229941.peg.1414 CDS AP013045.1 1622877 1623617 3 + 741 hypothetical protein - none -
fig|6666666.229941.peg.1415 CDS AP013045.1 1623732 1624253 3 + 522 probable methyltransferase - none -
fig|6666666.229941.peg.1416 CDS AP013045.1 1624333 1624986 1 + 654 methlytransferase, UbiE/COQ5 family - none -
fig|6666666.229941.peg.1417 CDS AP013045.1 1625065 1625880 1 + 816 hypothetical protein - none -
fig|6666666.229941.peg.1418 CDS AP013045.1 1625977 1626744 1 + 768 METHYLTRANSFERASE - none -
fig|6666666.229941.peg.1419 CDS AP013045.1 1626791 1627369 2 + 579 Putative membrane protein - none -
fig|6666666.229941.peg.1420 CDS AP013045.1 1627366 1627761 1 + 396 hypothetical protein - none -
fig|6666666.229941.peg.1421 CDS AP013045.1 1627949 1628077 2 + 129 hypothetical protein - none -
fig|6666666.229941.peg.1422 CDS AP013045.1 1628083 1629834 1 + 1752 ABC transporter ATP-binding protein - none -
fig|6666666.229941.peg.1423 CDS AP013045.1 1630276 1629911 -1 - 366 Conserved protein - none -
fig|6666666.229941.peg.1424 CDS AP013045.1 1630364 1632094 2 + 1731 ABC transporter, ATP-binding protein, putative - none -
fig|6666666.229941.peg.1425 CDS AP013045.1 1632178 1633092 1 + 915 Glutaminase (EC 3.5.1.2) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229941.peg.1426 CDS AP013045.1 1633259 1633948 2 + 690 hypothetical protein - none -
fig|6666666.229941.peg.1427 CDS AP013045.1 1634055 1635044 3 + 990 Cobalt-zinc-cadmium resistance protein CzcD Cobalt-zinc-cadmium resistance
fig|6666666.229941.peg.1428 CDS AP013045.1 1635614 1635342 -2 - 273 hypothetical protein - none -
fig|6666666.229941.peg.1429 CDS AP013045.1 1635755 1636729 2 + 975 Riboflavin kinase (EC 2.7.1.26) / FMN adenylyltransferase (EC 2.7.7.2) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin, FMN and FAD metabolism in plants;
riboflavin to FAD;
riboflavin to FAD
fig|6666666.229941.peg.1430 CDS AP013045.1 1636751 1637824 2 + 1074 Acetylornithine deacetylase (EC 3.5.1.16) Arginine Biosynthesis -- gjo;
Arginine Biosynthesis extended
fig|6666666.229941.peg.1431 CDS AP013045.1 1637818 1639068 1 + 1251 Membrane protein involved in the export of O-antigen, teichoic acid lipoteichoic acids - none -
fig|6666666.229941.peg.1432 CDS AP013045.1 1639749 1639129 -3 - 621 Thiamin pyrophosphokinase (EC 2.7.6.2) Thiamin biosynthesis
fig|6666666.229941.peg.1433 CDS AP013045.1 1639891 1641003 1 + 1113 Protein containing cell adhesion domain - none -
fig|6666666.229941.peg.1434 CDS AP013045.1 1641072 1642694 3 + 1623 Uncharacterized protein containing predicted cell adhesion domain and ChW-repeats - none -
fig|6666666.229941.peg.1435 CDS AP013045.1 1644129 1642867 -3 - 1263 Putative arylsulfatase regulatory protein - none -
fig|6666666.229941.peg.1436 CDS AP013045.1 1644345 1645034 3 + 690 Succinate dehydrogenase cytochrome b subunit Succinate dehydrogenase
fig|6666666.229941.peg.1437 CDS AP013045.1 1645151 1647016 2 + 1866 Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) Succinate dehydrogenase
fig|6666666.229941.peg.1438 CDS AP013045.1 1647048 1647803 3 + 756 Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) 5-FCL-like protein;
Succinate dehydrogenase
fig|6666666.229941.peg.1439 CDS AP013045.1 1648379 1648513 2 + 135 hypothetical protein - none -
fig|6666666.229941.peg.1440 CDS AP013045.1 1648890 1650680 3 + 1791 Arginyl-tRNA synthetase (EC 6.1.1.19) tRNA aminoacylation, Arg
fig|6666666.229941.peg.1441 CDS AP013045.1 1653077 1650735 -2 - 2343 DNA topoisomerase I (EC 5.99.1.2) CBSS-272943.3.peg.1367;
Conserved gene cluster associated with Met-tRNA formyltransferase;
DNA topoisomerases, Type I, ATP-independent
fig|6666666.229941.peg.1442 CDS AP013045.1 1653118 1653246 1 + 129 hypothetical protein - none -
fig|6666666.229941.peg.1443 CDS AP013045.1 1653270 1655939 3 + 2670 Valyl-tRNA synthetase (EC 6.1.1.9) tRNA aminoacylation, Val
fig|6666666.229941.peg.1444 CDS AP013045.1 1655983 1656990 1 + 1008 hypothetical protein - none -
fig|6666666.229941.peg.1445 CDS AP013045.1 1657442 1657849 2 + 408 hypothetical protein - none -
fig|6666666.229941.peg.1446 CDS AP013045.1 1658182 1658334 1 + 153 hypothetical protein - none -
fig|6666666.229941.peg.1447 CDS AP013045.1 1658407 1661925 1 + 3519 hypothetical protein - none -
fig|6666666.229941.peg.1448 CDS AP013045.1 1662586 1662095 -1 - 492 hypothetical protein - none -
fig|6666666.229941.peg.1449 CDS AP013045.1 1662557 1666117 2 + 3561 hypothetical protein - none -
fig|6666666.229941.peg.1450 CDS AP013045.1 1666739 1667671 2 + 933 COG1242: Predicted Fe-S oxidoreductase - none -
fig|6666666.229941.peg.1451 CDS AP013045.1 1667722 1669890 1 + 2169 Dipeptidyl peptidase IV - none -
fig|6666666.229941.peg.1452 CDS AP013045.1 1669890 1670741 3 + 852 Lipoate synthase Lipoic acid metabolism;
Lipoic acid synthesis cluster
fig|6666666.229941.peg.1453 CDS AP013045.1 1670791 1671999 1 + 1209 Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2) Isoprenoid Biosynthesis;
Isoprenoid Biosynthesis: Interconversions
fig|6666666.229941.peg.1454 CDS AP013045.1 1672501 1671977 -1 - 525 FIG00937838: hypothetical protein - none -
fig|6666666.229941.peg.1455 CDS AP013045.1 1673408 1672665 -2 - 744 hypothetical protein - none -
fig|6666666.229941.peg.1456 CDS AP013045.1 1674554 1673445 -2 - 1110 FIG00899400: hypothetical protein - none -
fig|6666666.229941.peg.1457 CDS AP013045.1 1675802 1674609 -2 - 1194 Aspartate aminotransferase (EC 2.6.1.1) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229941.peg.1458 CDS AP013045.1 1677047 1675836 -2 - 1212 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants
fig|6666666.229941.peg.1459 CDS AP013045.1 1678848 1677025 -3 - 1824 membrane protein, putative - none -
fig|6666666.229941.peg.1460 CDS AP013045.1 1679439 1678996 -3 - 444 hypothetical protein - none -
fig|6666666.229941.peg.1461 CDS AP013045.1 1679650 1680102 1 + 453 FIG000325: clustered with transcription termination protein NusA NusA-TFII Cluster;
Transcription factors bacterial
fig|6666666.229941.peg.1462 CDS AP013045.1 1680138 1681496 3 + 1359 Transcription termination protein NusA NusA-TFII Cluster;
Transcription factors bacterial
fig|6666666.229941.peg.1463 CDS AP013045.1 1681525 1684482 1 + 2958 Translation initiation factor 2 CBSS-138119.3.peg.2719;
NusA-TFII Cluster;
Translation initiation factors bacterial;
Universal GTPases
fig|6666666.229941.peg.1464 CDS AP013045.1 1684495 1684992 1 + 498 hypothetical protein - none -
fig|6666666.229941.peg.1465 CDS AP013045.1 1684994 1686451 2 + 1458 Iron-sulfur cluster assembly protein SufB Iron-sulfur cluster assembly;
tRNA modification Bacteria
fig|6666666.229941.peg.1466 CDS AP013045.1 1686544 1687302 1 + 759 Iron-sulfur cluster assembly ATPase protein SufC Iron-sulfur cluster assembly;
tRNA modification Bacteria
fig|6666666.229941.peg.1467 CDS AP013045.1 1687312 1688688 1 + 1377 Iron-sulfur cluster assembly protein SufD Iron-sulfur cluster assembly;
tRNA modification Bacteria
fig|6666666.229941.peg.1468 CDS AP013045.1 1688786 1689259 2 + 474 hypothetical protein - none -
fig|6666666.229941.peg.1469 CDS AP013045.1 1690285 1689266 -1 - 1020 membrane protein, putative - none -
fig|6666666.229941.peg.1470 CDS AP013045.1 1691118 1690345 -3 - 774 Prephenate and/or arogenate dehydrogenase (unknown specificity) (EC 1.3.1.12)(EC 1.3.1.43) Chorismate Synthesis;
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229941.peg.1471 CDS AP013045.1 1692201 1691131 -3 - 1071 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I beta (EC 2.5.1.54) / Chorismate mutase I (EC 5.4.99.5) Chorismate Synthesis;
Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate);
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229941.peg.1472 CDS AP013045.1 1693414 1692236 -1 - 1179 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aspartate aminotransferase (EC 2.6.1.1) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Phenylalanine and Tyrosine Branches from Chorismate;
Threonine and Homoserine Biosynthesis
fig|6666666.229941.peg.1473 CDS AP013045.1 1694261 1693419 -2 - 843 Prephenate dehydratase (EC 4.2.1.51) Chorismate Synthesis;
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.229941.peg.1474 CDS AP013045.1 1695336 1694554 -3 - 783 3-oxoacyl-[acyl-carrier protein] reductase paralog (EC 1.1.1.100) - none -
fig|6666666.229941.peg.1475 CDS AP013045.1 1695839 1695480 -2 - 360 Small heat shock protein - none -
fig|6666666.229941.peg.1476 CDS AP013045.1 1696488 1696291 -3 - 198 hypothetical protein - none -
fig|6666666.229941.peg.1477 CDS AP013045.1 1696659 1697861 3 + 1203 Cysteine desulfurase (EC 2.8.1.7), SufS subfamily Alanine biosynthesis;
Iron-sulfur cluster assembly;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.229941.peg.1478 CDS AP013045.1 1697978 1699675 2 + 1698 hypothetical protein - none -
fig|6666666.229941.peg.1479 CDS AP013045.1 1699871 1700044 2 + 174 PlcB, ORFX, ORFP, ORFB, ORFA, ldh gene - none -
fig|6666666.229941.peg.1480 CDS AP013045.1 1700046 1700648 3 + 603 Ribonuclease HII (EC 3.1.26.4) Conserved gene cluster associated with Met-tRNA formyltransferase;
Ribonuclease H
fig|6666666.229941.peg.1481 CDS AP013045.1 1701079 1700651 -1 - 429 Sulfur acceptor protein SufE for iron-sulfur cluster assembly Iron-sulfur cluster assembly
fig|6666666.229941.peg.1482 CDS AP013045.1 1702093 1701092 -1 - 1002 Aminopeptidase Y (Arg, Lys, Leu preference) (EC 3.4.11.15) Aminopeptidases (EC 3.4.11.-)
fig|6666666.229941.peg.1483 CDS AP013045.1 1703887 1702106 -1 - 1782 Membrane dipeptidase precursor (EC 3.4.13.19) - none -
fig|6666666.229941.peg.1484 CDS AP013045.1 1705923 1703965 -3 - 1959 DNA gyrase subunit B (EC 5.99.1.3) Cell Division Subsystem including YidCD;
DNA gyrase subunits;
DNA replication cluster 1;
DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.229941.peg.1485 CDS AP013045.1 1705998 1706132 3 + 135 hypothetical protein - none -
fig|6666666.229941.peg.1486 CDS AP013045.1 1708339 1706153 -1 - 2187 ABC transporter ATP-binding protein - none -
fig|6666666.229941.peg.1487 CDS AP013045.1 1709729 1708344 -2 - 1386 putative hemolysin secretion protein - none -
fig|6666666.229941.peg.1488 CDS AP013045.1 1710393 1709719 -3 - 675 putative glycosyltransferase - none -
fig|6666666.229941.peg.1489 CDS AP013045.1 1711513 1710383 -1 - 1131 Putative glycosyltransferase - none -
fig|6666666.229941.peg.1490 CDS AP013045.1 1712374 1711640 -1 - 735 hypothetical protein - none -
fig|6666666.229941.peg.1491 CDS AP013045.1 1713798 1712920 -3 - 879 Glycosyltransferase (EC 2.4.1.-) - none -
fig|6666666.229941.peg.1492 CDS AP013045.1 1715066 1713795 -2 - 1272 Glycosyltransferase (EC 2.4.1.-) - none -
fig|6666666.229941.peg.1493 CDS AP013045.1 1716012 1715053 -3 - 960 hypothetical protein - none -
fig|6666666.229941.peg.1494 CDS AP013045.1 1716430 1716125 -1 - 306 hypothetical protein - none -
fig|6666666.229941.peg.1495 CDS AP013045.1 1716907 1716788 -1 - 120 Putative glycosyltransferase - none -
fig|6666666.229941.peg.1496 CDS AP013045.1 1718663 1716978 -2 - 1686 Succinoglycan biosynthesis protein - none -
fig|6666666.229941.peg.1497 CDS AP013045.1 1719493 1719380 -1 - 114 hypothetical protein - none -
fig|6666666.229941.peg.1498 CDS AP013045.1 1720230 1720057 -3 - 174 SSU ribosomal protein S20p Ribosome SSU bacterial
fig|6666666.229941.peg.1499 CDS AP013045.1 1720642 1721742 1 + 1101 putative anti-sigma factor - none -
fig|6666666.229941.peg.1500 CDS AP013045.1 1721920 1725069 1 + 3150 Putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.229941.peg.1501 CDS AP013045.1 1725123 1726829 3 + 1707 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.229941.peg.1502 CDS AP013045.1 1726980 1730552 3 + 3573 SusC, outer membrane protein involved in starch binding Cellulosome
fig|6666666.229941.peg.1503 CDS AP013045.1 1730624 1732075 2 + 1452 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.229941.peg.1504 CDS AP013045.1 1732099 1733241 1 + 1143 Thiol:disulfide interchange protein - none -
fig|6666666.229941.peg.1505 CDS AP013045.1 1733913 1733566 -3 - 348 transcriptional regulator, Fur family Oxidative stress
fig|6666666.229941.peg.1506 CDS AP013045.1 1734451 1734137 -1 - 315 Thioredoxin CBSS-315749.4.peg.3658
fig|6666666.229941.peg.1507 CDS AP013045.1 1738265 1734480 -2 - 3786 DNA polymerase III alpha subunit (EC 2.7.7.7) - none -
fig|6666666.229941.peg.1508 CDS AP013045.1 1738413 1739033 3 + 621 hypothetical protein - none -
fig|6666666.229941.peg.1509 CDS AP013045.1 1739126 1740223 2 + 1098 hypothetical protein - none -
fig|6666666.229941.peg.1510 CDS AP013045.1 1740291 1740752 3 + 462 Methylglyoxal synthase (EC 4.2.3.3) Methylglyoxal Metabolism
fig|6666666.229941.peg.1511 CDS AP013045.1 1741595 1740765 -2 - 831 TPR repeat - none -
fig|6666666.229941.peg.1512 CDS AP013045.1 1741674 1742378 3 + 705 SSU ribosomal protein S16p Ribosome SSU bacterial
fig|6666666.229941.peg.1513 CDS AP013045.1 1742950 1742495 -1 - 456 Thioredoxin CBSS-315749.4.peg.3658
fig|6666666.229941.peg.1514 CDS AP013045.1 1743050 1744267 2 + 1218 SAM-dependent methyltransferases - none -
fig|6666666.229941.peg.1515 CDS AP013045.1 1746164 1744251 -2 - 1914 ATP-dependent DNA helicase, RecQ family - none -
fig|6666666.229941.peg.1516 CDS AP013045.1 1747895 1746171 -2 - 1725 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) DNA Repair Base Excision;
DNA repair, bacterial RecFOR pathway
fig|6666666.229941.peg.1517 CDS AP013045.1 1748162 1747968 -2 - 195 hypothetical protein - none -
fig|6666666.229941.peg.1518 CDS AP013045.1 1748614 1748126 -1 - 489 probable membrane protein NMA1128 - none -
fig|6666666.229941.peg.1519 CDS AP013045.1 1749670 1748666 -1 - 1005 Methionyl-tRNA formyltransferase (EC 2.1.2.9) Conserved gene cluster associated with Met-tRNA formyltransferase;
Translation initiation factors bacterial
fig|6666666.229941.peg.1520 CDS AP013045.1 1752258 1750198 -3 - 2061 Chaperone protein HtpG Protein chaperones
fig|6666666.229941.peg.1521 CDS AP013045.1 1754942 1752378 -2 - 2565 ATP-dependent Clp protease ATP-binding subunit ClpA Proteolysis in bacteria, ATP-dependent;
Ribosome recycling related cluster
fig|6666666.229941.peg.1522 CDS AP013045.1 1756342 1755089 -1 - 1254 Magnesium and cobalt efflux protein CorC CBSS-56780.10.peg.1536;
Copper homeostasis: copper tolerance;
Glycyl-tRNA synthetase containing cluster;
Magnesium transport;
tRNA-methylthiotransferase containing cluster
fig|6666666.229941.peg.1523 CDS AP013045.1 1757559 1756351 -3 - 1209 L-serine dehydratase (EC 4.3.1.17) Glycine and Serine Utilization
fig|6666666.229941.peg.1524 CDS AP013045.1 1757638 1758660 1 + 1023 Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20) tRNA aminoacylation, Phe
fig|6666666.229941.peg.1525 CDS AP013045.1 1758703 1759356 1 + 654 Endonuclease III (EC 4.2.99.18) DNA Repair Base Excision
fig|6666666.229941.peg.1526 CDS AP013045.1 1759466 1762294 2 + 2829 Probable zinc protease pqqL (EC 3.4.99.-) - none -
fig|6666666.229941.peg.1527 CDS AP013045.1 1763370 1762771 -3 - 600 hypothetical protein - none -
fig|6666666.229941.peg.1528 CDS AP013045.1 1763972 1763448 -2 - 525 Mobile element protein - none -
fig|6666666.229941.peg.1529 CDS AP013045.1 1764314 1764505 2 + 192 hypothetical protein - none -
fig|6666666.229941.peg.1530 CDS AP013045.1 1764502 1765497 1 + 996 protein transglucosylase - none -
fig|6666666.229941.peg.1531 CDS AP013045.1 1765921 1766922 1 + 1002 hypothetical protein - none -
fig|6666666.229941.peg.1532 CDS AP013045.1 1768302 1767094 -3 - 1209 Mlc, transcriptional repressor of MalT (the transcriptional activator of maltose regulon) and manXYZ operon Maltose and Maltodextrin Utilization
fig|6666666.229941.peg.1533 CDS AP013045.1 1768312 1768449 1 + 138 hypothetical protein - none -
fig|6666666.229941.peg.1534 CDS AP013045.1 1768909 1768544 -1 - 366 Transcriptional regulator, MarR family - none -
fig|6666666.229941.peg.1535 CDS AP013045.1 1769373 1768915 -3 - 459 Thioredoxin CBSS-315749.4.peg.3658
fig|6666666.229941.peg.1536 CDS AP013045.1 1769582 1769382 -2 - 201 hypothetical protein - none -
fig|6666666.229941.peg.1537 CDS AP013045.1 1772042 1769598 -2 - 2445 NADH dehydrogenase (EC 1.6.99.3) Respiratory dehydrogenases 1
fig|6666666.229941.peg.1538 CDS AP013045.1 1772302 1773165 1 + 864 hypothetical protein - none -
fig|6666666.229941.peg.1539 CDS AP013045.1 1773162 1773638 3 + 477 hypothetical protein - none -
fig|6666666.229941.peg.1540 CDS AP013045.1 1773661 1774584 1 + 924 Protease - none -
fig|6666666.229941.peg.1541 CDS AP013045.1 1775343 1775810 3 + 468 Furin precursor (EC 3.4.21.75) - none -
fig|6666666.229941.peg.1542 CDS AP013045.1 1775877 1776011 3 + 135 hypothetical protein - none -
fig|6666666.229941.peg.1543 CDS AP013045.1 1776051 1776587 3 + 537 Shikimate kinase I (EC 2.7.1.71) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229941.peg.1544 CDS AP013045.1 1776647 1778506 2 + 1860 2-oxoglutarate oxidoreductase, alpha subunit (EC 1.2.7.3) - none -
fig|6666666.229941.peg.1545 CDS AP013045.1 1778511 1779524 3 + 1014 2-oxoglutarate oxidoreductase, beta subunit (EC 1.2.7.3) - none -
fig|6666666.229941.peg.1546 CDS AP013045.1 1779837 1780715 3 + 879 Cell division protein FtsX Bacterial Cell Division
fig|6666666.229941.peg.1547 CDS AP013045.1 1780740 1780994 3 + 255 hypothetical protein - none -
fig|6666666.229941.peg.1548 CDS AP013045.1 1780991 1781803 2 + 813 Undecaprenyl-diphosphatase (EC 3.6.1.27) - none -
fig|6666666.229941.peg.1549 CDS AP013045.1 1781815 1782534 1 + 720 tRNA pseudouridine synthase B (EC 4.2.1.70) CBSS-138119.3.peg.2719;
RNA pseudouridine syntheses;
Riboflavin, FMN and FAD metabolism in plants;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229941.peg.1550 CDS AP013045.1 1782549 1783598 3 + 1050 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) CBSS-211586.1.peg.2832;
Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229941.peg.1551 CDS AP013045.1 1783595 1784074 2 + 480 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) Folate Biosynthesis;
Folate biosynthesis cluster
fig|6666666.229941.peg.1552 CDS AP013045.1 1785713 1784097 -2 - 1617 Aspartate ammonia-lyase (EC 4.3.1.1) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229941.peg.1553 CDS AP013045.1 1785905 1786018 2 + 114 hypothetical protein - none -
fig|6666666.229941.peg.1554 CDS AP013045.1 1788603 1786252 -3 - 2352 Ferrichrome-iron receptor - none -
fig|6666666.229941.peg.1555 CDS AP013045.1 1789037 1790287 2 + 1251 Fucose permease - none -
fig|6666666.229941.peg.1556 CDS AP013045.1 1790534 1790881 2 + 348 hypothetical protein - none -
fig|6666666.229941.peg.1557 CDS AP013045.1 1790950 1791711 1 + 762 FIG00403293: hypothetical protein - none -
fig|6666666.229941.peg.1558 CDS AP013045.1 1792374 1791712 -3 - 663 hypothetical protein - none -
fig|6666666.229941.peg.1559 CDS AP013045.1 1792340 1792474 2 + 135 hypothetical protein - none -
fig|6666666.229941.peg.1560 CDS AP013045.1 1792471 1793652 1 + 1182 Cystathionine beta-lyase, Bsu PatB (EC 4.4.1.8) - none -
fig|6666666.229941.peg.1561 CDS AP013045.1 1793727 1794272 3 + 546 RNA polymerase sigma-70 factor, ECF subfamily - none -
fig|6666666.229941.peg.1562 CDS AP013045.1 1794286 1794657 1 + 372 hypothetical protein - none -
fig|6666666.229941.peg.1563 CDS AP013045.1 1794808 1796613 1 + 1806 SSU ribosomal protein S1p Cell division-ribosomal stress proteins cluster;
Ribosome SSU bacterial
fig|6666666.229941.peg.1564 CDS AP013045.1 1796862 1797719 3 + 858 Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9) - none -
fig|6666666.229941.peg.1565 CDS AP013045.1 1799471 1797825 -2 - 1647 Hydroxylamine reductase (EC 1.7.-.-) Nitrosative stress
fig|6666666.229941.peg.1566 CDS AP013045.1 1799718 1799572 -3 - 147 hypothetical protein - none -
fig|6666666.229941.peg.1567 CDS AP013045.1 1801534 1799726 -1 - 1809 GTP-binding protein TypA/BipA Universal GTPases
fig|6666666.229941.peg.1568 CDS AP013045.1 1801684 1801953 1 + 270 SSU ribosomal protein S15p (S13e) Ribosome SSU bacterial
fig|6666666.229941.peg.1569 CDS AP013045.1 1804179 1802089 -3 - 2091 Lysine 2,3-aminomutase (EC 5.4.3.2) - none -
fig|6666666.229941.peg.1570 CDS AP013045.1 1804383 1804255 -3 - 129 hypothetical protein - none -
fig|6666666.229941.peg.1571 CDS AP013045.1 1804417 1805016 1 + 600 Hcp transcriptional regulator HcpR (Crp/Fnr family) Nitrosative stress
fig|6666666.229941.peg.1572 CDS AP013045.1 1805254 1805114 -1 - 141 hypothetical protein - none -
fig|6666666.229941.peg.1573 CDS AP013045.1 1806851 1805697 -2 - 1155 Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229941.peg.1574 CDS AP013045.1 1808428 1806878 -1 - 1551 Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.229941.peg.1575 CDS AP013045.1 1808573 1808451 -2 - 123 hypothetical protein - none -
fig|6666666.229941.peg.1576 CDS AP013045.1 1808816 1809406 2 + 591 RNA polymerase ECF-type sigma factor - none -
fig|6666666.229941.peg.1577 CDS AP013045.1 1809576 1810700 3 + 1125 putative anti-sigma factor - none -
fig|6666666.229941.peg.1578 CDS AP013045.1 1810857 1814255 3 + 3399 TonB-dependent receptor Ton and Tol transport systems
fig|6666666.229941.peg.1579 CDS AP013045.1 1814273 1816168 2 + 1896 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.229941.peg.1580 CDS AP013045.1 1816340 1817821 2 + 1482 Myo-inositol 2-dehydrogenase (EC 1.1.1.18) - none -
fig|6666666.229941.peg.1581 CDS AP013045.1 1817961 1818803 3 + 843 Probable secreted glycosyl hydrolase - none -
fig|6666666.229941.peg.1582 CDS AP013045.1 1819652 1818903 -2 - 750 hypothetical protein - none -
fig|6666666.229941.peg.1583 CDS AP013045.1 1819682 1821019 2 + 1338 Peptidase, M16 family - none -
fig|6666666.229941.peg.1584 CDS AP013045.1 1822858 1821065 -1 - 1794 Chloride channel protein - none -
fig|6666666.229941.peg.1585 CDS AP013045.1 1824260 1822860 -2 - 1401 capsular polysaccharide biosynthesis protein Rhamnose containing glycans
fig|6666666.229941.peg.1586 CDS AP013045.1 1824844 1824260 -1 - 585 TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA - none -
fig|6666666.229941.peg.1587 CDS AP013045.1 1824822 1824938 3 + 117 hypothetical protein - none -
fig|6666666.229941.peg.1588 CDS AP013045.1 1826249 1825011 -2 - 1239 hypothetical protein - none -
fig|6666666.229941.peg.1589 CDS AP013045.1 1827063 1826320 -3 - 744 Glucosamine-6-phosphate deaminase (EC 3.5.99.6) Chitin and N-acetylglucosamine utilization
fig|6666666.229941.peg.1590 CDS AP013045.1 1827699 1827154 -3 - 546 hypothetical protein - none -
fig|6666666.229941.peg.1591 CDS AP013045.1 1828891 1827713 -1 - 1179 Alkyldihydroxyacetonephosphate synthase (EC 2.5.1.26) - none -
fig|6666666.229941.peg.1592 CDS AP013045.1 1829697 1828921 -3 - 777 Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-) Lipoprotein Biosynthesis
fig|6666666.229941.peg.1593 CDS AP013045.1 1830753 1829857 -3 - 897 Meso-diaminopimelate D-dehydrogenase (EC 1.4.1.16) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229941.peg.1594 CDS AP013045.1 1830783 1830899 3 + 117 hypothetical protein - none -
fig|6666666.229941.peg.1595 CDS AP013045.1 1831031 1830906 -2 - 126 hypothetical protein - none -
fig|6666666.229941.peg.1596 CDS AP013045.1 1831727 1831918 2 + 192 hypothetical protein - none -
fig|6666666.229941.peg.1597 CDS AP013045.1 1833211 1832078 -1 - 1134 Acetylornithine aminotransferase (EC 2.6.1.11) Arginine Biosynthesis -- gjo;
Arginine Biosynthesis extended
fig|6666666.229941.peg.1598 CDS AP013045.1 1834218 1833244 -3 - 975 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) Arginine Biosynthesis -- gjo;
Arginine Biosynthesis extended
fig|6666666.229941.peg.1599 CDS AP013045.1 1835462 1834215 -2 - 1248 Argininosuccinate synthase (EC 6.3.4.5) Arginine Biosynthesis -- gjo;
Arginine Biosynthesis extended
fig|6666666.229941.peg.1600 CDS AP013045.1 1836135 1835485 -3 - 651 FIG00651573: hypothetical protein - none -
fig|6666666.229941.peg.1601 CDS AP013045.1 1836641 1836132 -2 - 510 Arginine pathway regulatory protein ArgR, repressor of arg regulon Arginine Biosynthesis -- gjo;
Arginine Biosynthesis extended;
Arginine Deiminase Pathway;
Arginine and Ornithine Degradation
fig|6666666.229941.peg.1602 CDS AP013045.1 1836881 1838602 2 + 1722 Tetratricopeptide repeat family protein - none -
fig|6666666.229941.peg.1603 CDS AP013045.1 1838888 1839037 2 + 150 hypothetical protein - none -
fig|6666666.229941.peg.1604 CDS AP013045.1 1840481 1839177 -2 - 1305 Nucleoside permease NupG - none -
fig|6666666.229941.peg.1605 CDS AP013045.1 1840686 1841963 3 + 1278 BchE/P-methylase family protein - none -
fig|6666666.229941.peg.1606 CDS AP013045.1 1842037 1842435 1 + 399 hypothetical protein - none -
fig|6666666.229941.peg.1607 CDS AP013045.1 1842432 1843454 3 + 1023 FIG00655207: hypothetical protein - none -
fig|6666666.229941.peg.1608 CDS AP013045.1 1843451 1844212 2 + 762 ABC transporter, ATP-binding protein - none -
fig|6666666.229941.peg.1609 CDS AP013045.1 1844187 1845464 3 + 1278 ABC transporter, permease component - none -
fig|6666666.229941.peg.1610 CDS AP013045.1 1845530 1846732 2 + 1203 Na+/H+-dicarboxylate symporter - none -
fig|6666666.229941.peg.1611 CDS AP013045.1 1847973 1846840 -3 - 1134 Lipid-A-disaccharide synthase (EC 2.4.1.182) Llipid A biosynthesis cluster
fig|6666666.229941.peg.1612 CDS AP013045.1 1848750 1847980 -3 - 771 5-nucleotidase SurE (EC 3.1.3.5) Housecleaning nucleoside triphosphate pyrophosphatases;
Stationary phase repair cluster
fig|6666666.229941.peg.1613 CDS AP013045.1 1848856 1850289 1 + 1434 Cardiolipin synthetase (EC 2.7.8.-) Cardiolipin synthesis;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229941.peg.1614 CDS AP013045.1 1850818 1850261 -1 - 558 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) CBSS-226186.1.peg.3978;
CBSS-266117.6.peg.1260;
CBSS-269801.1.peg.1715;
RNA methylation
fig|6666666.229941.peg.1615 CDS AP013045.1 1851564 1850806 -3 - 759 FIG032012: hypothetical protein CBSS-226186.1.peg.3978
fig|6666666.229941.peg.1616 CDS AP013045.1 1852311 1851625 -3 - 687 FIG036016: hypothetical protein CBSS-226186.1.peg.3978
fig|6666666.229941.peg.1617 CDS AP013045.1 1852404 1853828 3 + 1425 RecD-like DNA helicase Atu2026 - none -
fig|6666666.229941.peg.1618 CDS AP013045.1 1853952 1854074 3 + 123 hypothetical protein - none -
fig|6666666.229941.peg.1619 CDS AP013045.1 1854303 1854941 3 + 639 hypothetical protein - none -
fig|6666666.229941.peg.1620 CDS AP013045.1 1854956 1855657 2 + 702 rRNA small subunit methyltransferase I 16S rRNA modification within P site of ribosome;
Heat shock dnaK gene cluster extended
fig|6666666.229941.peg.1621 CDS AP013045.1 1855709 1856545 2 + 837 lipoprotein, putative - none -
fig|6666666.229941.peg.1622 CDS AP013045.1 1856542 1857240 1 + 699 Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5@1-phosphoribitylamino)uracil phosphatase Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants
fig|6666666.229941.peg.1623 CDS AP013045.1 1857384 1857542 3 + 159 hypothetical protein - none -
fig|6666666.229941.peg.1624 CDS AP013045.1 1857767 1857603 -2 - 165 hypothetical protein - none -
fig|6666666.229941.peg.1625 CDS AP013045.1 1857758 1859254 2 + 1497 Cobyric acid synthase (EC 6.3.5.10) Cobalamin synthesis
fig|6666666.229941.peg.1626 CDS AP013045.1 1860126 1859227 -3 - 900 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) Cobalamin synthesis
fig|6666666.229941.peg.1627 CDS AP013045.1 1861049 1860147 -2 - 903 L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) Cobalamin synthesis
fig|6666666.229941.peg.1628 CDS AP013045.1 1861279 1861656 1 + 378 Bona fide RidA/YjgF/TdcF/RutC subgroup - none -
fig|6666666.229941.peg.1629 CDS AP013045.1 1861854 1863005 3 + 1152 hypothetical protein - none -
fig|6666666.229941.peg.1630 CDS AP013045.1 1863033 1863509 3 + 477 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis;
Stationary phase repair cluster
fig|6666666.229941.peg.1631 CDS AP013045.1 1864808 1863516 -2 - 1293 ATPase, AAA family - none -
fig|6666666.229941.peg.1632 CDS AP013045.1 1864995 1865384 3 + 390 hypothetical protein - none -
fig|6666666.229941.peg.1633 CDS AP013045.1 1865480 1866394 2 + 915 Mobile element protein - none -
fig|6666666.229941.peg.1634 CDS AP013045.1 1866532 1867113 1 + 582 hypothetical protein - none -
fig|6666666.229941.peg.1635 CDS AP013045.1 1867144 1867371 1 + 228 hypothetical protein - none -
fig|6666666.229941.peg.1636 CDS AP013045.1 1867368 1867811 3 + 444 tRNA-specific adenosine-34 deaminase (EC 3.5.4.-) tRNA modification Bacteria;
tRNA processing
fig|6666666.229941.peg.1637 CDS AP013045.1 1869426 1867822 -3 - 1605 Regulatory protein SusR Cellulosome
fig|6666666.229941.peg.1638 CDS AP013045.1 1870355 1869525 -2 - 831 CAAX amino terminal protease family - none -
fig|6666666.229941.peg.1639 CDS AP013045.1 1871191 1870475 -1 - 717 tRNA (Guanine37-N1) -methyltransferase (EC 2.1.1.31) RNA methylation;
Ribosome biogenesis bacterial;
tRNA modification Bacteria
fig|6666666.229941.peg.1640 CDS AP013045.1 1871194 1871313 1 + 120 hypothetical protein - none -
fig|6666666.229941.peg.1641 CDS AP013045.1 1871317 1873779 1 + 2463 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) tRNA aminoacylation, Phe
fig|6666666.229941.peg.1642 CDS AP013045.1 1873807 1874529 1 + 723 FIG000859: hypothetical protein YebC Riboflavin, FMN and FAD metabolism in plants;
RuvABC plus a hypothetical
fig|6666666.229941.peg.1643 CDS AP013045.1 1875512 1874970 -2 - 543 hypothetical protein - none -
fig|6666666.229941.peg.1644 CDS AP013045.1 1876238 1877143 2 + 906 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) Ammonia assimilation;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229941.peg.1645 CDS AP013045.1 1877149 1877871 1 + 723 Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) Queuosine-Archaeosine Biosynthesis
fig|6666666.229941.peg.1646 CDS AP013045.1 1877876 1878490 2 + 615 FIG00896812: hypothetical protein - none -
fig|6666666.229941.peg.1647 CDS AP013045.1 1879129 1878467 -1 - 663 TRNA/rRNA methyltransferase - none -
fig|6666666.229941.peg.1648 CDS AP013045.1 1880531 1879143 -2 - 1389 Phosphomannomutase (EC 5.4.2.8) / Phosphoglucosamine mutase (EC 5.4.2.10) Bacterial checkpoint-control-related cluster;
Mannose Metabolism
fig|6666666.229941.peg.1649 CDS AP013045.1 1880814 1881131 3 + 318 LSU ribosomal protein L21p CBSS-176279.3.peg.868;
Ribosome LSU bacterial
fig|6666666.229941.peg.1650 CDS AP013045.1 1881152 1881430 2 + 279 LSU ribosomal protein L27p CBSS-176279.3.peg.868;
Ribosome LSU bacterial
fig|6666666.229941.peg.1651 CDS AP013045.1 1881581 1882123 2 + 543 Lipoprotein spr precursor - none -
fig|6666666.229941.peg.1652 CDS AP013045.1 1882197 1883468 3 + 1272 Seryl-tRNA synthetase (EC 6.1.1.11) Glycine and Serine Utilization;
tRNA aminoacylation, Ser
fig|6666666.229941.peg.1653 CDS AP013045.1 1884709 1883582 -1 - 1128 Phosphoesterase (EC 3.1.-.-) - none -
fig|6666666.229941.peg.1654 CDS AP013045.1 1886210 1885116 -2 - 1095 filamentation induced by cAMP protein Fic - none -
fig|6666666.229941.peg.1655 CDS AP013045.1 1886334 1886191 -3 - 144 hypothetical protein - none -
fig|6666666.229941.peg.1656 CDS AP013045.1 1887216 1888427 3 + 1212 ATPase - none -
fig|6666666.229941.peg.1657 CDS AP013045.1 1888823 1889839 2 + 1017 Vitamin B12 ABC transporter, permease component BtuC - none -
fig|6666666.229941.peg.1658 CDS AP013045.1 1891086 1889878 -3 - 1209 FIG00896635: hypothetical protein - none -
fig|6666666.229941.peg.1659 CDS AP013045.1 1893049 1891070 -1 - 1980 FIG00896368: hypothetical protein - none -
fig|6666666.229941.peg.1660 CDS AP013045.1 1900631 1893183 -2 - 7449 FIG00897849: hypothetical protein - none -
fig|6666666.229941.peg.1661 CDS AP013045.1 1901221 1900631 -1 - 591 Holliday junction DNA helicase RuvA RuvABC plus a hypothetical
fig|6666666.229941.peg.1662 CDS AP013045.1 1901395 1901730 1 + 336 Translation initiation factor SUI1-related protein Translation initiation factors bacterial
fig|6666666.229941.peg.1663 CDS AP013045.1 1901724 1904948 3 + 3225 FIG003033: Helicase domain protein - none -
fig|6666666.229941.peg.1664 CDS AP013045.1 1905003 1905677 3 + 675 Phosphatidylserine decarboxylase (EC 4.1.1.65) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229941.peg.1665 CDS AP013045.1 1905682 1906425 1 + 744 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229941.peg.1666 CDS AP013045.1 1906515 1907420 3 + 906 Transcriptional regulator, AraC family - none -
fig|6666666.229941.peg.1667 CDS AP013045.1 1907463 1908698 3 + 1236 GTP-binding protein HflX Hfl operon;
Universal GTPases
fig|6666666.229941.peg.1668 CDS AP013045.1 1908816 1908700 -3 - 117 hypothetical protein - none -
fig|6666666.229941.peg.1669 CDS AP013045.1 1910233 1908818 -1 - 1416 hypothetical protein - none -
fig|6666666.229941.peg.1670 CDS AP013045.1 1911350 1910220 -2 - 1131 hypothetical protein - none -
fig|6666666.229941.peg.1671 CDS AP013045.1 1911780 1911655 -3 - 126 hypothetical protein - none -
fig|6666666.229941.peg.1672 CDS AP013045.1 1911965 1912084 2 + 120 hypothetical protein - none -
fig|6666666.229941.peg.1673 CDS AP013045.1 1912437 1912234 -3 - 204 hypothetical protein - none -
fig|6666666.229941.peg.1674 CDS AP013045.1 1913759 1912680 -2 - 1080 similar to (EMBL:AL117211) YPMT1.20C, Yersinia pestis CO-92 hypothetical protein from plasmid pMT1; similar to (EMBL:AF074611) Y1035, Yersinia pestis KIM5 hypothetical protein from plasmid pMT1; blastn and dotplot analyses suggest that an insertion event has taken place at this point as compared to Yersinia pestis pMT1 - none -
fig|6666666.229941.peg.1675 CDS AP013045.1 1914359 1913817 -2 - 543 LemA protein CBSS-393011.11.peg.386
fig|6666666.229941.peg.1676 CDS AP013045.1 1916342 1914513 -2 - 1830 Threonyl-tRNA synthetase - none -
fig|6666666.229941.peg.1677 CDS AP013045.1 1916563 1916342 -1 - 222 hypothetical protein - none -
fig|6666666.229941.peg.1678 CDS AP013045.1 1918138 1916699 -1 - 1440 5@1-nucleotidase (EC 3.1.3.5) Purine conversions
fig|6666666.229941.peg.1679 CDS AP013045.1 1919351 1918161 -2 - 1191 hypothetical protein - none -
fig|6666666.229941.peg.1680 CDS AP013045.1 1919652 1919768 3 + 117 hypothetical protein - none -
fig|6666666.229941.peg.1681 CDS AP013045.1 1922532 1920259 -3 - 2274 Chitin binding protein Chitin and N-acetylglucosamine utilization
fig|6666666.229941.peg.1682 CDS AP013045.1 1922769 1922617 -3 - 153 hypothetical protein - none -
fig|6666666.229941.peg.1683 CDS AP013045.1 1926351 1924078 -3 - 2274 Cell surface protein - none -
fig|6666666.229941.peg.1684 CDS AP013045.1 1927339 1927181 -1 - 159 hypothetical protein - none -
fig|6666666.229941.peg.1685 CDS AP013045.1 1927604 1930558 2 + 2955 Adenylate cyclase (EC 4.6.1.1) cAMP signaling in bacteria
fig|6666666.229941.peg.1686 CDS AP013045.1 1933047 1930714 -3 - 2334 Beta-hexosaminidase (EC 3.2.1.52) Chitin and N-acetylglucosamine utilization
fig|6666666.229941.peg.1687 CDS AP013045.1 1934364 1933084 -3 - 1281 Serine hydroxymethyltransferase (EC 2.1.2.1) 5-FCL-like protein;
Glycine Biosynthesis;
Glycine and Serine Utilization;
Serine Biosynthesis
fig|6666666.229941.peg.1688 CDS AP013045.1 1935500 1934916 -2 - 585 Superoxide dismutase [Fe] (EC 1.15.1.1) Oxidative stress;
Protection from Reactive Oxygen Species
fig|6666666.229941.peg.1689 CDS AP013045.1 1936319 1935648 -2 - 672 DNA recombination and repair protein RecO DNA repair, bacterial RecFOR pathway;
Glycyl-tRNA synthetase containing cluster
fig|6666666.229941.peg.1690 CDS AP013045.1 1937499 1936498 -3 - 1002 hypothetical protein - none -
fig|6666666.229941.peg.1691 CDS AP013045.1 1937740 1937627 -1 - 114 hypothetical protein - none -
fig|6666666.229941.peg.1692 CDS AP013045.1 1937772 1939292 3 + 1521 Glutamyl-tRNA synthetase (EC 6.1.1.17) tRNA aminoacylation, Glu and Gln
fig|6666666.229941.peg.1693 CDS AP013045.1 1939292 1940524 2 + 1233 Lipid IVA 3-deoxy-D-manno-octulosonic acid transferase (EC 2.4.99.12) [often with (EC 2.4.99.13) also] - none -
fig|6666666.229941.peg.1694 CDS AP013045.1 1941664 1940528 -1 - 1137 Capsule biosynthesis protein capA - none -
fig|6666666.229941.peg.1695 CDS AP013045.1 1942395 1941661 -3 - 735 N-acetylglutamate synthase (EC 2.3.1.1) Arginine Biosynthesis -- gjo;
Arginine Biosynthesis extended
fig|6666666.229941.peg.1696 CDS AP013045.1 1942361 1942552 2 + 192 SSU ribosomal protein S21p Macromolecular synthesis operon;
Ribosome SSU bacterial
fig|6666666.229941.peg.1697 CDS AP013045.1 1942697 1943527 2 + 831 Integrase, site-specific recombinase - none -
fig|6666666.229941.peg.1698 CDS AP013045.1 1943539 1943838 1 + 300 Ribosome hibernation protein YhbH Ribosome activity modulation
fig|6666666.229941.peg.1699 CDS AP013045.1 1944255 1945442 3 + 1188 Translation elongation factor Tu Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Translation elongation factors bacterial;
Universal GTPases
fig|6666666.229941.peg.1700 CDS AP013045.1 1945780 1946322 1 + 543 Transcription antitermination protein NusG Transcription factors bacterial
fig|6666666.229941.peg.1701 CDS AP013045.1 1946384 1946830 2 + 447 LSU ribosomal protein L11p (L12e) Ribosome LSU bacterial
fig|6666666.229941.peg.1702 CDS AP013045.1 1946845 1947540 1 + 696 LSU ribosomal protein L1p (L10Ae) Ribosome LSU bacterial
fig|6666666.229941.peg.1703 CDS AP013045.1 1947563 1948090 2 + 528 LSU ribosomal protein L10p (P0) Ribosome LSU bacterial
fig|6666666.229941.peg.1704 CDS AP013045.1 1948133 1948507 2 + 375 LSU ribosomal protein L7/L12 (P1/P2) Ribosome LSU bacterial
fig|6666666.229941.peg.1705 CDS AP013045.1 1948624 1952436 1 + 3813 DNA-directed RNA polymerase beta subunit (EC 2.7.7.6) Mycobacterium virulence operon involved in DNA transcription;
RNA polymerase bacterial
fig|6666666.229941.peg.1706 CDS AP013045.1 1952465 1956742 2 + 4278 DNA-directed RNA polymerase beta@1 subunit (EC 2.7.7.6) Mycobacterium virulence operon involved in DNA transcription;
RNA polymerase bacterial
fig|6666666.229941.peg.1707 CDS AP013045.1 1956767 1958302 2 + 1536 ATPase component BioM of energizing module of biotin ECF transporter - none -
fig|6666666.229941.peg.1708 CDS AP013045.1 1958497 1958613 1 + 117 hypothetical protein - none -
fig|6666666.229941.peg.1709 CDS AP013045.1 1958698 1959843 1 + 1146 Isochorismate synthase (EC 5.4.4.2) @ Menaquinone-specific isochorismate synthase (EC 5.4.4.2) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229941.peg.1710 CDS AP013045.1 1959843 1961576 3 + 1734 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase (EC 2.2.1.9) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229941.peg.1711 CDS AP013045.1 1961601 1962419 3 + 819 Naphthoate synthase (EC 4.1.3.36) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229941.peg.1712 CDS AP013045.1 1962512 1963486 2 + 975 O-succinylbenzoate synthase (EC 4.2.1.113) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo;
Muconate lactonizing enzyme family
fig|6666666.229941.peg.1713 CDS AP013045.1 1963486 1964535 1 + 1050 O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229941.peg.1714 CDS AP013045.1 1965521 1964823 -2 - 699 TonB-dependent receptor Ton and Tol transport systems
fig|6666666.229941.peg.1715 CDS AP013045.1 1966282 1967295 1 + 1014 Integrase - none -
fig|6666666.229941.peg.1716 CDS AP013045.1 1967399 1967635 2 + 237 hypothetical protein - none -
fig|6666666.229941.peg.1717 CDS AP013045.1 1967717 1968985 2 + 1269 hypothetical protein - none -
fig|6666666.229941.peg.1718 CDS AP013045.1 1969044 1969844 3 + 801 DNA-methyltransferase - none -
fig|6666666.229941.peg.1719 CDS AP013045.1 1969847 1971409 2 + 1563 putative ABC oligo/dipeptide transport, ATP-binding protein - none -
fig|6666666.229941.peg.1720 CDS AP013045.1 1971585 1971746 3 + 162 hypothetical protein - none -
fig|6666666.229941.peg.1721 CDS AP013045.1 1972290 1973333 3 + 1044 Putative DNA-binding protein in cluster with Type I restriction-modification system - none -
fig|6666666.229941.peg.1722 CDS AP013045.1 1973803 1975299 1 + 1497 ATP-dependent DNA helicase recG - none -
fig|6666666.229941.peg.1723 CDS AP013045.1 1976004 1975399 -3 - 606 FIG00936814: hypothetical protein - none -
fig|6666666.229941.peg.1724 CDS AP013045.1 1976927 1976007 -2 - 921 FIG00937318: hypothetical protein - none -
fig|6666666.229941.peg.1725 CDS AP013045.1 1977277 1976924 -1 - 354 Conjugative transposon protein TraB Conjugative transposon, Bacteroidales
fig|6666666.229941.peg.1726 CDS AP013045.1 1978395 1977421 -3 - 975 DNA primase (EC 2.7.7.-) CBSS-349161.4.peg.2417;
Macromolecular synthesis operon
fig|6666666.229941.peg.1727 CDS AP013045.1 1978582 1978448 -1 - 135 hypothetical protein - none -
fig|6666666.229941.peg.1728 CDS AP013045.1 1979789 1978599 -2 - 1191 FIG00897594: hypothetical protein - none -
fig|6666666.229941.peg.1729 CDS AP013045.1 1980035 1979793 -2 - 243 putative excisionase - none -
fig|6666666.229941.peg.1730 CDS AP013045.1 1981131 1980211 -3 - 921 FIG00897538: hypothetical protein - none -
fig|6666666.229941.peg.1731 CDS AP013045.1 1982568 1981624 -3 - 945 Hydrolases of the alpha/beta superfamily - none -
fig|6666666.229941.peg.1732 CDS AP013045.1 1983433 1982600 -1 - 834 Endonuclease IV (EC 3.1.21.2) DNA repair, bacterial
fig|6666666.229941.peg.1733 CDS AP013045.1 1985428 1983452 -1 - 1977 hypothetical protein - none -
fig|6666666.229941.peg.1734 CDS AP013045.1 1986177 1985434 -3 - 744 Glycosyl transferase, group 2 family protein - none -
fig|6666666.229941.peg.1735 CDS AP013045.1 1986284 1990993 2 + 4710 Conserved domain protein - none -
fig|6666666.229941.peg.1736 CDS AP013045.1 1990986 1993295 3 + 2310 FIG00896779: hypothetical protein - none -
fig|6666666.229941.peg.1737 CDS AP013045.1 1996124 1993566 -2 - 2559 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) Cellulosome
fig|6666666.229941.peg.1738 CDS AP013045.1 1996075 1996197 1 + 123 hypothetical protein - none -
fig|6666666.229941.peg.1739 CDS AP013045.1 1996401 1997213 3 + 813 Glycosyltransferase (EC 2.4.1.-) - none -
fig|6666666.229941.peg.1740 CDS AP013045.1 1997216 1998640 2 + 1425 hypothetical protein - none -
fig|6666666.229941.peg.1741 CDS AP013045.1 1998594 1999895 3 + 1302 hypothetical protein - none -
fig|6666666.229941.peg.1742 CDS AP013045.1 1999885 2000700 1 + 816 Glycosyl transferase, family 2 - none -
fig|6666666.229941.peg.1743 CDS AP013045.1 2000670 2001959 3 + 1290 Glycosyltransferase (EC 2.4.1.-) - none -
fig|6666666.229941.peg.1744 CDS AP013045.1 2002307 2003644 2 + 1338 glycosyl transferase group 1 - none -
fig|6666666.229941.peg.1745 CDS AP013045.1 2004772 2003639 -1 - 1134 Alpha-D-GlcNAc alpha-1,2-L-rhamnosyltransferase (EC 2.4.1.-) Rhamnose containing glycans
fig|6666666.229941.peg.1746 CDS AP013045.1 2005262 2004789 -2 - 474 LSU m3Psi1915 methyltransferase RlmH RNA methylation;
Ribosome biogenesis bacterial;
tRNA modification Bacteria
fig|6666666.229941.peg.1747 CDS AP013045.1 2005579 2005830 1 + 252 hypothetical protein - none -
fig|6666666.229941.peg.1748 CDS AP013045.1 2005854 2006702 3 + 849 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) Mycobacterium virulence operon possibly involved in quinolinate biosynthesis;
NAD and NADP cofactor biosynthesis global
fig|6666666.229941.peg.1749 CDS AP013045.1 2006727 2009420 3 + 2694 hypothetical protein - none -
fig|6666666.229941.peg.1750 CDS AP013045.1 2010001 2009429 -1 - 573 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.229941.peg.1751 CDS AP013045.1 2010727 2010023 -1 - 705 Tetrapyrrole methylase family protein - none -
fig|6666666.229941.peg.1752 CDS AP013045.1 2011465 2012433 1 + 969 hypothetical protein - none -
fig|6666666.229941.peg.1753 CDS AP013045.1 2015031 2012776 -3 - 2256 Chitin binding protein Chitin and N-acetylglucosamine utilization
fig|6666666.229941.peg.1754 CDS AP013045.1 2015598 2015449 -3 - 150 hypothetical protein - none -
fig|6666666.229941.peg.1755 CDS AP013045.1 2015768 2015646 -2 - 123 hypothetical protein - none -
fig|6666666.229941.peg.1756 CDS AP013045.1 2016384 2016268 -3 - 117 hypothetical protein - none -
fig|6666666.229941.peg.1757 CDS AP013045.1 2020928 2016609 -2 - 4320 Chitin binding protein Chitin and N-acetylglucosamine utilization
fig|6666666.229941.peg.1758 CDS AP013045.1 2021967 2021731 -3 - 237 hypothetical protein - none -
fig|6666666.229941.peg.1759 CDS AP013045.1 2023120 2022521 -1 - 600 hypothetical protein - none -
fig|6666666.229941.peg.1760 CDS AP013045.1 2024115 2023198 -3 - 918 Mobile element protein - none -
fig|6666666.229941.peg.1761 CDS AP013045.1 2025066 2024131 -3 - 936 Transposase - none -
fig|6666666.229941.peg.1762 CDS AP013045.1 2025318 2027477 3 + 2160 DNA repair and recombination protein, putative helicase - none -
fig|6666666.229941.peg.1763 CDS AP013045.1 2028036 2028185 3 + 150 hypothetical protein - none -
fig|6666666.229941.peg.1764 CDS AP013045.1 2028324 2032004 3 + 3681 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) De Novo Purine Biosynthesis;
De Novo Purine Biosynthesis
fig|6666666.229941.peg.1765 CDS AP013045.1 2032332 2033846 3 + 1515 Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-) Potassium homeostasis
fig|6666666.229941.peg.1766 CDS AP013045.1 2033866 2034591 1 + 726 Transcriptional regulatory protein rprY - none -
fig|6666666.229941.peg.1767 CDS AP013045.1 2035409 2034759 -2 - 651 hypothetical protein - none -
fig|6666666.229941.peg.1768 CDS AP013045.1 2036242 2035544 -1 - 699 Putative predicted metal-dependent hydrolase - none -
fig|6666666.229941.peg.1769 CDS AP013045.1 2036402 2036235 -2 - 168 hypothetical protein - none -
fig|6666666.229941.peg.1770 CDS AP013045.1 2036599 2037138 1 + 540 RNA polymerase ECF-type sigma factor - none -
fig|6666666.229941.peg.1771 CDS AP013045.1 2037322 2038317 1 + 996 putative anti-sigma factor - none -
fig|6666666.229941.peg.1772 CDS AP013045.1 2038436 2041870 2 + 3435 SusC, outer membrane protein involved in starch binding Cellulosome
fig|6666666.229941.peg.1773 CDS AP013045.1 2041991 2043667 2 + 1677 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.229941.peg.1774 CDS AP013045.1 2043709 2044968 1 + 1260 Glycosyltransferase (EC 2.4.1.-) - none -
fig|6666666.229941.peg.1775 CDS AP013045.1 2045803 2045123 -1 - 681 Oxidoreductase, short chain dehydrogenase/reductase family - none -
fig|6666666.229941.peg.1776 CDS AP013045.1 2046106 2045930 -1 - 177 hypothetical protein - none -
fig|6666666.229941.peg.1777 CDS AP013045.1 2046249 2047112 3 + 864 hypothetical protein - none -
fig|6666666.229941.peg.1778 CDS AP013045.1 2047123 2047329 1 + 207 hypothetical protein - none -
fig|6666666.229941.peg.1779 CDS AP013045.1 2047630 2049669 1 + 2040 Polyphosphate kinase (EC 2.7.4.1) Phosphate metabolism;
Polyphosphate;
Purine conversions
fig|6666666.229941.peg.1780 CDS AP013045.1 2051012 2049666 -2 - 1347 tRNA and rRNA cytosine-C5-methylases - none -
fig|6666666.229941.peg.1781 CDS AP013045.1 2052884 2051061 -2 - 1824 Lipoteichoic acid synthase LtaS Type IVb Polyglycerolphosphate lipoteichoic acid biosynthesis
fig|6666666.229941.peg.1782 CDS AP013045.1 2052942 2053622 3 + 681 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase;
Potassium homeostasis
fig|6666666.229941.peg.1783 CDS AP013045.1 2053632 2054729 3 + 1098 Chorismate synthase (EC 4.2.3.5) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229941.peg.1784 CDS AP013045.1 2056139 2054706 -2 - 1434 Carboxyl-terminal protease - none -
fig|6666666.229941.peg.1785 CDS AP013045.1 2056516 2056274 -1 - 243 hypothetical protein - none -
fig|6666666.229941.peg.1786 CDS AP013045.1 2056642 2057682 1 + 1041 hypothetical protein - none -
fig|6666666.229941.peg.1787 CDS AP013045.1 2059044 2057725 -3 - 1320 Membrane-associated zinc metalloprotease - none -
fig|6666666.229941.peg.1788 CDS AP013045.1 2060277 2059144 -3 - 1134 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.267) CBSS-83331.1.peg.3039;
Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.229941.peg.1789 CDS AP013045.1 2061183 2060305 -3 - 879 Membrane proteins related to metalloendopeptidases - none -
fig|6666666.229941.peg.1790 CDS AP013045.1 2061721 2061188 -1 - 534 16S rRNA processing protein RimM Ribosome biogenesis bacterial
fig|6666666.229941.peg.1791 CDS AP013045.1 2061906 2061757 -3 - 150 hypothetical protein - none -
fig|6666666.229941.peg.1792 CDS AP013045.1 2062541 2061903 -2 - 639 FIG00649584: hypothetical protein - none -
fig|6666666.229941.peg.1793 CDS AP013045.1 2062725 2064266 3 + 1542 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) - none -
fig|6666666.229941.peg.1794 CDS AP013045.1 2064291 2066411 3 + 2121 Transcription accessory protein (S1 RNA-binding domain) Cell division-ribosomal stress proteins cluster;
Transcription factors bacterial
fig|6666666.229941.peg.1795 CDS AP013045.1 2067820 2066615 -1 - 1206 hypothetical protein - none -
fig|6666666.229941.peg.1796 CDS AP013045.1 2067802 2067954 1 + 153 hypothetical protein - none -
fig|6666666.229941.peg.1797 CDS AP013045.1 2068043 2069125 2 + 1083 Aldose 1-epimerase (EC 5.1.3.3) Lactose and Galactose Uptake and Utilization;
Maltose and Maltodextrin Utilization
fig|6666666.229941.peg.1798 CDS AP013045.1 2069172 2070479 3 + 1308 Predicted glucose transporter in maltodextrin utilization gene cluster Maltose and Maltodextrin Utilization
fig|6666666.229941.peg.1799 CDS AP013045.1 2070555 2071694 3 + 1140 Galactokinase (EC 2.7.1.6) Lactose and Galactose Uptake and Utilization
fig|6666666.229941.peg.1800 CDS AP013045.1 2071885 2073114 1 + 1230 Mobile element protein - none -
fig|6666666.229941.peg.1801 CDS AP013045.1 2073242 2074549 2 + 1308 FIG00898204: hypothetical protein - none -
fig|6666666.229941.peg.1802 CDS AP013045.1 2076444 2074555 -3 - 1890 COG0488: ATPase components of ABC transporters with duplicated ATPase domains - none -
fig|6666666.229941.peg.1803 CDS AP013045.1 2077966 2076479 -1 - 1488 Inosine-5@1-monophosphate dehydrogenase (EC 1.1.1.205) Purine conversions;
Purine salvage cluster
fig|6666666.229941.peg.1804 CDS AP013045.1 2080636 2078186 -1 - 2451 Ferrous iron transport protein B - none -
fig|6666666.229941.peg.1805 CDS AP013045.1 2081144 2080749 -2 - 396 hypothetical protein - none -
fig|6666666.229941.peg.1806 CDS AP013045.1 2081518 2082615 1 + 1098 putative two-component system sensor protein histidine kinase - none -
fig|6666666.229941.peg.1807 CDS AP013045.1 2082634 2083383 1 + 750 Two-component system response regulator - none -
fig|6666666.229941.peg.1808 CDS AP013045.1 2083880 2083728 -2 - 153 hypothetical protein - none -
fig|6666666.229941.peg.1809 CDS AP013045.1 2084013 2084126 3 + 114 hypothetical protein - none -
fig|6666666.229941.peg.1810 CDS AP013045.1 2084680 2084898 1 + 219 hypothetical protein - none -
fig|6666666.229941.peg.1811 CDS AP013045.1 2084910 2085179 3 + 270 hypothetical protein - none -
fig|6666666.229941.peg.1812 CDS AP013045.1 2085205 2085351 1 + 147 hypothetical protein - none -
fig|6666666.229941.peg.1813 CDS AP013045.1 2085589 2085795 1 + 207 hypothetical protein - none -
fig|6666666.229941.peg.1814 CDS AP013045.1 2085813 2086250 3 + 438 FIG00937340: hypothetical protein - none -
fig|6666666.229941.peg.1815 CDS AP013045.1 2086287 2086412 3 + 126 FIG00937820: hypothetical protein - none -
fig|6666666.229941.peg.1816 CDS AP013045.1 2086426 2086680 1 + 255 FIG00935801: hypothetical protein - none -
fig|6666666.229941.peg.1817 CDS AP013045.1 2086667 2086915 2 + 249 FIG00935811: hypothetical protein - none -
fig|6666666.229941.peg.1818 CDS AP013045.1 2088439 2087543 -1 - 897 Carbohydrate kinase, PfkB - none -
fig|6666666.229941.peg.1819 CDS AP013045.1 2089260 2088457 -3 - 804 hypothetical protein - none -
fig|6666666.229941.peg.1820 CDS AP013045.1 2090063 2089257 -2 - 807 hypothetical protein - none -
fig|6666666.229941.peg.1821 CDS AP013045.1 2091688 2090408 -1 - 1281 Enolase (EC 4.2.1.11) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis
fig|6666666.229941.peg.1822 CDS AP013045.1 2092153 2091785 -1 - 369 hypothetical protein - none -
fig|6666666.229941.peg.1823 CDS AP013045.1 2092659 2092165 -3 - 495 Flavodoxin 1 Flavodoxin
fig|6666666.229941.peg.1824 CDS AP013045.1 2093264 2092938 -2 - 327 FIG00935708: hypothetical protein - none -
fig|6666666.229941.peg.1825 CDS AP013045.1 2093863 2093261 -1 - 603 hypothetical transporter PduT for various metalloporphyrins - none -
fig|6666666.229941.peg.1826 CDS AP013045.1 2094564 2093860 -3 - 705 FIG00402742: hypothetical protein - none -
fig|6666666.229941.peg.1827 CDS AP013045.1 2098951 2094566 -1 - 4386 CobN/magnesium chelatase family protein - none -
fig|6666666.229941.peg.1828 CDS AP013045.1 2101072 2098976 -1 - 2097 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins Ton and Tol transport systems
fig|6666666.229941.peg.1829 CDS AP013045.1 2103571 2101337 -1 - 2235 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins Ton and Tol transport systems
fig|6666666.229941.peg.1830 CDS AP013045.1 2104235 2103585 -2 - 651 hypothetical protein - none -
fig|6666666.229941.peg.1831 CDS AP013045.1 2105822 2104281 -2 - 1542 hypothetical protein - none -
fig|6666666.229941.peg.1832 CDS AP013045.1 2105949 2106092 3 + 144 hypothetical protein - none -
fig|6666666.229941.peg.1833 CDS AP013045.1 2106666 2106839 3 + 174 hypothetical protein - none -
fig|6666666.229941.peg.1834 CDS AP013045.1 2106817 2109357 1 + 2541 Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) Ribonucleotide reduction
fig|6666666.229941.peg.1835 CDS AP013045.1 2109389 2110441 2 + 1053 Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) Ribonucleotide reduction
fig|6666666.229941.peg.1836 CDS AP013045.1 2111195 2112430 2 + 1236 hypothetical protein - none -
fig|6666666.229941.peg.1837 CDS AP013045.1 2112519 2113376 3 + 858 hypothetical protein - none -
fig|6666666.229941.peg.1838 CDS AP013045.1 2113382 2116009 2 + 2628 hypothetical protein - none -
fig|6666666.229941.peg.1839 CDS AP013045.1 2117287 2116013 -1 - 1275 alternate gene name: yzbB - none -
fig|6666666.229941.peg.1840 CDS AP013045.1 2117349 2117567 3 + 219 hypothetical protein - none -
fig|6666666.229941.peg.1841 CDS AP013045.1 2117600 2118214 2 + 615 LSU ribosomal protein L13p (L13Ae) Ribosome LSU bacterial
fig|6666666.229941.peg.1842 CDS AP013045.1 2118220 2118606 1 + 387 SSU ribosomal protein S9p (S16e) Ribosome SSU bacterial
fig|6666666.229941.peg.1843 CDS AP013045.1 2118748 2119608 1 + 861 SSU ribosomal protein S2p (SAe) CBSS-312309.3.peg.1965;
Ribosome SSU bacterial;
Ribosome recycling related cluster
fig|6666666.229941.peg.1844 CDS AP013045.1 2119626 2120450 3 + 825 Translation elongation factor Ts CBSS-312309.3.peg.1965;
Ribosome recycling related cluster;
Translation elongation factors bacterial
fig|6666666.229941.peg.1845 CDS AP013045.1 2120585 2121460 2 + 876 ABC transporter ATP-binding protein - none -
fig|6666666.229941.peg.1846 CDS AP013045.1 2121467 2122141 2 + 675 FIG00405701: hypothetical protein - none -
fig|6666666.229941.peg.1847 CDS AP013045.1 2122165 2123388 1 + 1224 hypothetical protein - none -
fig|6666666.229941.peg.1848 CDS AP013045.1 2123417 2123962 2 + 546 hypothetical protein - none -
fig|6666666.229941.peg.1849 CDS AP013045.1 2123965 2124534 1 + 570 hypothetical protein - none -
fig|6666666.229941.peg.1850 CDS AP013045.1 2125159 2124686 -1 - 474 lipoprotein, putative - none -
fig|6666666.229941.peg.1851 CDS AP013045.1 2126083 2125187 -1 - 897 hypothetical protein - none -
fig|6666666.229941.peg.1852 CDS AP013045.1 2126363 2126187 -2 - 177 hypothetical protein - none -
fig|6666666.229941.peg.1853 CDS AP013045.1 2127673 2126483 -1 - 1191 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.229941.peg.1854 CDS AP013045.1 2130835 2127686 -1 - 3150 SusC, outer membrane protein involved in starch binding Cellulosome
fig|6666666.229941.peg.1855 CDS AP013045.1 2131764 2131567 -3 - 198 hypothetical protein - none -
fig|6666666.229941.peg.1856 CDS AP013045.1 2131868 2131987 2 + 120 hypothetical protein - none -
fig|6666666.229941.peg.1857 CDS AP013045.1 2131988 2132143 2 + 156 hypothetical protein - none -
fig|6666666.229941.peg.1858 CDS AP013045.1 2132311 2132183 -1 - 129 hypothetical protein - none -
fig|6666666.229941.peg.1859 CDS AP013045.1 2135562 2132341 -3 - 3222 Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) De Novo Pyrimidine Synthesis;
Macromolecular synthesis operon
fig|6666666.229941.peg.1860 CDS AP013045.1 2136335 2135607 -2 - 729 hypothetical protein - none -
fig|6666666.229941.peg.1861 CDS AP013045.1 2140165 2136323 -1 - 3843 ATP-dependent DNA helicase RecQ DNA repair, bacterial RecFOR pathway
fig|6666666.229941.peg.1862 CDS AP013045.1 2140368 2140210 -3 - 159 hypothetical protein - none -
fig|6666666.229941.peg.1863 CDS AP013045.1 2142645 2140384 -3 - 2262 POTASSIUM/PROTON ANTIPORTER ROSB Potassium homeostasis
fig|6666666.229941.peg.1864 CDS AP013045.1 2143870 2142743 -1 - 1128 hypothetical protein - none -
fig|6666666.229941.peg.1865 CDS AP013045.1 2144013 2145560 3 + 1548 NAD(P)HX epimerase / NAD(P)HX dehydratase YjeE;
YjeE
fig|6666666.229941.peg.1866 CDS AP013045.1 2145748 2145948 1 + 201 FIG00898802: hypothetical protein - none -
fig|6666666.229941.peg.1867 CDS AP013045.1 2146084 2146359 1 + 276 FIG034863: hypothetical protein CBSS-226186.1.peg.4416
fig|6666666.229941.peg.1868 CDS AP013045.1 2146362 2146667 3 + 306 Cell division ZapA family protein CBSS-226186.1.peg.4416
fig|6666666.229941.peg.1869 CDS AP013045.1 2146628 2146768 2 + 141 hypothetical protein - none -
fig|6666666.229941.peg.1870 CDS AP013045.1 2146781 2148310 2 + 1530 2@1,3@1-cyclic-nucleotide 2@1-phosphodiesterase (EC 3.1.4.16) CBSS-226186.1.peg.4416;
Purine conversions
fig|6666666.229941.peg.1871 CDS AP013045.1 2148445 2149659 1 + 1215 Nicotinate phosphoribosyltransferase (EC 2.4.2.11) NAD and NADP cofactor biosynthesis global;
Redox-dependent regulation of nucleus processes
fig|6666666.229941.peg.1872 CDS AP013045.1 2151275 2149656 -2 - 1620 ABC transporter ATP-binding protein uup - none -
fig|6666666.229941.peg.1874 CDS AP013045.1 2152270 2153418 1 + 1149 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229941.peg.1875 CDS AP013045.1 2153423 2154046 2 + 624 Recombination protein RecR DNA processing cluster;
DNA repair, bacterial RecFOR pathway
fig|6666666.229941.peg.1876 CDS AP013045.1 2154051 2155220 3 + 1170 Glycosyl transferase, group 2 family protein - none -
fig|6666666.229941.peg.1877 CDS AP013045.1 2155239 2155769 3 + 531 Acetyltransferase - none -
fig|6666666.229941.peg.1878 CDS AP013045.1 2155865 2156026 2 + 162 hypothetical protein - none -
fig|6666666.229941.peg.1879 CDS AP013045.1 2156113 2157087 1 + 975 Adenine-specific methyltransferase (EC 2.1.1.72) CBSS-257314.1.peg.752
fig|6666666.229941.peg.1880 CDS AP013045.1 2158095 2157979 -3 - 117 hypothetical protein - none -
fig|6666666.229941.peg.1881 CDS AP013045.1 2158094 2158789 2 + 696 Uracil-DNA glycosylase, family 1 DNA Repair Base Excision;
Uracil-DNA glycosylase
fig|6666666.229941.peg.1882 CDS AP013045.1 2161531 2158790 -1 - 2742 Organic solvent tolerance protein precursor ECSIG4-SIG7
fig|6666666.229941.peg.1883 CDS AP013045.1 2162147 2161605 -2 - 543 HDIG domain protein - none -
fig|6666666.229941.peg.1884 CDS AP013045.1 2162138 2163454 2 + 1317 alternate gene name: yzbB - none -
fig|6666666.229941.peg.1885 CDS AP013045.1 2164895 2163609 -2 - 1287 Na(+)-translocating NADH-quinone reductase subunit F (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229941.peg.1886 CDS AP013045.1 2165539 2164922 -1 - 618 Na(+)-translocating NADH-quinone reductase subunit E (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229941.peg.1887 CDS AP013045.1 2166192 2165563 -3 - 630 Na(+)-translocating NADH-quinone reductase subunit D (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229941.peg.1888 CDS AP013045.1 2166927 2166196 -3 - 732 Na(+)-translocating NADH-quinone reductase subunit C (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229941.peg.1889 CDS AP013045.1 2168111 2166924 -2 - 1188 Na(+)-translocating NADH-quinone reductase subunit B (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229941.peg.1890 CDS AP013045.1 2169667 2168282 -1 - 1386 Na(+)-translocating NADH-quinone reductase subunit A (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229941.peg.1891 CDS AP013045.1 2170032 2171051 3 + 1020 FIG00897204: hypothetical protein - none -
fig|6666666.229941.peg.1892 CDS AP013045.1 2171083 2172768 1 + 1686 FIG00899229: hypothetical protein - none -
fig|6666666.229941.peg.1893 CDS AP013045.1 2172980 2174731 2 + 1752 Phosphoglucomutase (EC 5.4.2.2) - none -
fig|6666666.229941.peg.1894 CDS AP013045.1 2175346 2174873 -1 - 474 NADPH dependent preQ0 reductase (EC 1.7.1.13) - none -
fig|6666666.229941.peg.1895 CDS AP013045.1 2176622 2175471 -2 - 1152 GTP-binding protein Obg CBSS-176279.3.peg.868;
Universal GTPases
fig|6666666.229941.peg.1896 CDS AP013045.1 2177246 2176668 -2 - 579 Adenylate kinase (EC 2.7.4.3) Purine conversions
fig|6666666.229941.peg.1897 CDS AP013045.1 2177813 2177271 -2 - 543 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) Cell division-ribosomal stress proteins cluster;
Folate biosynthesis cluster;
Purine conversions
fig|6666666.229941.peg.1898 CDS AP013045.1 2178046 2179137 1 + 1092 Gll1843 protein - none -
fig|6666666.229941.peg.1899 CDS AP013045.1 2179134 2179790 3 + 657 hypothetical protein - none -
fig|6666666.229941.peg.1900 CDS AP013045.1 2179945 2180250 1 + 306 Possible glyoxylase family protein (Lactoylglutathione lyase) (EC 4.4.1.5) - none -
fig|6666666.229941.peg.1901 CDS AP013045.1 2180494 2182869 1 + 2376 NADH dehydrogenase subunit 2 - none -
fig|6666666.229941.peg.1902 CDS AP013045.1 2182829 2184034 2 + 1206 hypothetical protein - none -
fig|6666666.229941.peg.1903 CDS AP013045.1 2184986 2184036 -2 - 951 Glycosyltransferase - none -
fig|6666666.229941.peg.1904 CDS AP013045.1 2185744 2184983 -1 - 762 FIG00896949: hypothetical protein - none -
fig|6666666.229941.peg.1905 CDS AP013045.1 2185869 2187332 3 + 1464 sodium/iodide co-transporter - none -
fig|6666666.229941.peg.1906 CDS AP013045.1 2188748 2187348 -2 - 1401 Inner membrane protein CreD-like protein Tolerance to colicin E2
fig|6666666.229941.peg.1907 CDS AP013045.1 2189152 2188838 -1 - 315 Bsl7504 protein - none -
fig|6666666.229941.peg.1908 CDS AP013045.1 2189730 2189149 -3 - 582 hypothetical protein - none -
fig|6666666.229941.peg.1909 CDS AP013045.1 2189705 2189830 2 + 126 hypothetical protein - none -
fig|6666666.229941.peg.1910 CDS AP013045.1 2189995 2189840 -1 - 156 hypothetical protein - none -
fig|6666666.229941.peg.1911 CDS AP013045.1 2195856 2190055 -3 - 5802 hypothetical protein - none -
fig|6666666.229941.peg.1912 CDS AP013045.1 2195907 2196026 3 + 120 hypothetical protein - none -
fig|6666666.229941.peg.1913 CDS AP013045.1 2196146 2196283 2 + 138 hypothetical protein - none -
fig|6666666.229941.peg.1914 CDS AP013045.1 2196370 2197485 1 + 1116 thiol:disulfide interchange protein - none -
fig|6666666.229941.peg.1915 CDS AP013045.1 2198220 2197549 -3 - 672 Similar to tRNA pseudouridine synthase C, group TruC1 RNA pseudouridine syntheses;
Ribosome biogenesis bacterial
fig|6666666.229941.peg.1916 CDS AP013045.1 2199452 2198340 -2 - 1113 Beta-lactamase class C and other penicillin binding proteins Beta-lactamase
fig|6666666.229941.peg.1917 CDS AP013045.1 2200243 2199497 -1 - 747 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) - none -
fig|6666666.229941.peg.1918 CDS AP013045.1 2201241 2200297 -3 - 945 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) - none -
fig|6666666.229941.peg.1919 CDS AP013045.1 2201749 2201231 -1 - 519 Transcriptional regulator, TetR family - none -
fig|6666666.229941.peg.1920 CDS AP013045.1 2202458 2202177 -2 - 282 hypothetical protein - none -
fig|6666666.229941.peg.1921 CDS AP013045.1 2203065 2202430 -3 - 636 hypothetical protein - none -
fig|6666666.229941.peg.1922 CDS AP013045.1 2204885 2203257 -2 - 1629 TPR-repeat-containing protein - none -
fig|6666666.229941.peg.1923 CDS AP013045.1 2207168 2204976 -2 - 2193 Periplasmic beta-glucosidase (EC 3.2.1.21) - none -
fig|6666666.229941.peg.1924 CDS AP013045.1 2207990 2207298 -2 - 693 lipoprotein PG3 - none -
fig|6666666.229941.peg.1925 CDS AP013045.1 2208119 2208250 2 + 132 hypothetical protein - none -
fig|6666666.229941.peg.1926 CDS AP013045.1 2211785 2209104 -2 - 2682 ClpB protein Protein chaperones;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229941.peg.1927 CDS AP013045.1 2211926 2212609 2 + 684 TsaB protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Ribosome biogenesis bacterial;
YgjD and YeaZ;
YjeE
fig|6666666.229941.peg.1928 CDS AP013045.1 2212606 2213499 1 + 894 Phospholipase A1 precursor (EC 3.1.1.32, EC 3.1.1.4); Outer membrane phospholipase A Triacylglycerol metabolism
fig|6666666.229941.peg.1929 CDS AP013045.1 2216756 2213949 -2 - 2808 Adenylate cyclase (EC 4.6.1.1) cAMP signaling in bacteria
fig|6666666.229941.peg.1930 CDS AP013045.1 2218123 2216855 -1 - 1269 ATPase component BioM of energizing module of biotin ECF transporter - none -
fig|6666666.229941.peg.1931 CDS AP013045.1 2218522 2219490 1 + 969 hypothetical protein - none -
fig|6666666.229941.peg.1932 CDS AP013045.1 2219511 2220971 3 + 1461 Alanyl-tRNA synthetase (EC 6.1.1.7) CBSS-226186.1.peg.3994;
Cluster containing Alanyl-tRNA synthetase;
tRNA aminoacylation, Ala
fig|6666666.229941.peg.1933 CDS AP013045.1 2221098 2221535 3 + 438 hypothetical protein - none -
fig|6666666.229941.peg.1934 CDS AP013045.1 2222455 2222577 1 + 123 hypothetical protein - none -
fig|6666666.229941.peg.1935 CDS AP013045.1 2222644 2223561 1 + 918 N-acetylneuraminate lyase (EC 4.1.3.3) - none -
fig|6666666.229941.peg.1936 CDS AP013045.1 2223567 2224745 3 + 1179 N-acylglucosamine 2-epimerase (EC 5.1.3.8) - none -
fig|6666666.229941.peg.1937 CDS AP013045.1 2224767 2226014 3 + 1248 Major facilitator family transporter - none -
fig|6666666.229941.peg.1938 CDS AP013045.1 2226047 2229430 2 + 3384 TonB family protein / TonB-dependent receptor Ton and Tol transport systems
fig|6666666.229941.peg.1939 CDS AP013045.1 2229461 2231029 2 + 1569 Putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.229941.peg.1940 CDS AP013045.1 2231113 2232732 1 + 1620 Sialidase (EC 3.2.1.18) Galactosylceramide and Sulfatide metabolism
fig|6666666.229941.peg.1941 CDS AP013045.1 2232729 2234726 3 + 1998 Beta-hexosaminidase (EC 3.2.1.52) Chitin and N-acetylglucosamine utilization
fig|6666666.229941.peg.1942 CDS AP013045.1 2234744 2236822 2 + 2079 Sialic acid-specific 9-O-acetylesterase - none -
fig|6666666.229941.peg.1943 CDS AP013045.1 2236830 2238044 3 + 1215 Sialic acid-induced transmembrane protein YjhT(NanM), possible mutarotase - none -
fig|6666666.229941.peg.1944 CDS AP013045.1 2239784 2238312 -2 - 1473 Optional hypothetical component of the B12 transporter BtuN - none -
fig|6666666.229941.peg.1945 CDS AP013045.1 2240019 2239798 -3 - 222 hypothetical protein - none -
fig|6666666.229941.peg.1946 CDS AP013045.1 2242665 2240323 -3 - 2343 Outer membrane vitamin B12 receptor BtuB - none -
fig|6666666.229941.peg.1947 CDS AP013045.1 2243645 2242731 -2 - 915 Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3) Cobalamin synthesis
fig|6666666.229941.peg.1948 CDS AP013045.1 2245230 2243767 -3 - 1464 Optional hypothetical component of the B12 transporter BtuN - none -
fig|6666666.229941.peg.1949 CDS AP013045.1 2246518 2245244 -1 - 1275 hypothetical protein - none -
fig|6666666.229941.peg.1950 CDS AP013045.1 2248896 2246536 -3 - 2361 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins Ton and Tol transport systems
fig|6666666.229941.peg.1951 CDS AP013045.1 2249435 2250613 2 + 1179 Thiamin biosynthesis lipoprotein ApbE Iron-sulfur cluster assembly
fig|6666666.229941.peg.1952 CDS AP013045.1 2250942 2250754 -3 - 189 hypothetical protein - none -
fig|6666666.229941.peg.1953 CDS AP013045.1 2251965 2250958 -3 - 1008 Putative phosphohydrolase, Icc family - none -
fig|6666666.229941.peg.1954 CDS AP013045.1 2252133 2251969 -3 - 165 hypothetical protein - none -
fig|6666666.229941.peg.1955 CDS AP013045.1 2252158 2254182 1 + 2025 Membrane protein containing HD superfamily hydrolase domain, YQFF ortholog CBSS-56780.10.peg.1536
fig|6666666.229941.peg.1956 CDS AP013045.1 2254354 2254476 1 + 123 hypothetical protein - none -
fig|6666666.229941.peg.1957 CDS AP013045.1 2254538 2254687 2 + 150 Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8) D-Galacturonate and D-Glucuronate Utilization;
Xylose utilization
fig|6666666.229941.peg.1958 CDS AP013045.1 2254729 2255295 1 + 567 Flavodoxin Flavodoxin
fig|6666666.229941.peg.1959 CDS AP013045.1 2255650 2256060 1 + 411 Integrase - none -
fig|6666666.229941.peg.1960 CDS AP013045.1 2256289 2256582 1 + 294 FIG00937377: hypothetical protein - none -
fig|6666666.229941.peg.1961 CDS AP013045.1 2256838 2257449 1 + 612 FIG00937377: hypothetical protein - none -
fig|6666666.229941.peg.1962 CDS AP013045.1 2258256 2258369 3 + 114 hypothetical protein - none -
fig|6666666.229941.peg.1963 CDS AP013045.1 2258841 2259698 3 + 858 hypothetical protein - none -
fig|6666666.229941.peg.1964 CDS AP013045.1 2261199 2259742 -3 - 1458 hypothetical protein - none -
fig|6666666.229941.peg.1965 CDS AP013045.1 2262636 2261968 -3 - 669 hypothetical protein - none -
fig|6666666.229941.peg.1966 CDS AP013045.1 2262802 2263308 1 + 507 hypothetical protein - none -
fig|6666666.229941.peg.1967 CDS AP013045.1 2263315 2263488 1 + 174 hypothetical protein - none -
fig|6666666.229941.peg.1968 CDS AP013045.1 2263502 2263705 2 + 204 hypothetical protein - none -
fig|6666666.229941.peg.1969 CDS AP013045.1 2264009 2264131 2 + 123 hypothetical protein - none -
fig|6666666.229941.peg.1970 CDS AP013045.1 2264128 2264352 1 + 225 hypothetical protein - none -
fig|6666666.229941.peg.1971 CDS AP013045.1 2264774 2264935 2 + 162 hypothetical protein - none -
fig|6666666.229941.peg.1972 CDS AP013045.1 2265110 2267113 2 + 2004 hypothetical protein - none -
fig|6666666.229941.peg.1973 CDS AP013045.1 2267132 2268010 2 + 879 FIG00409580: hypothetical protein - none -
fig|6666666.229941.peg.1974 CDS AP013045.1 2268007 2268633 1 + 627 hypothetical protein - none -
fig|6666666.229941.peg.1975 CDS AP013045.1 2268659 2269108 2 + 450 hypothetical protein - none -
fig|6666666.229941.peg.1976 CDS AP013045.1 2269134 2269421 3 + 288 hypothetical protein - none -
fig|6666666.229941.peg.1977 CDS AP013045.1 2269468 2269620 1 + 153 hypothetical protein - none -
fig|6666666.229941.peg.1978 CDS AP013045.1 2269792 2270574 1 + 783 FIG00406346: hypothetical protein - none -
fig|6666666.229941.peg.1979 CDS AP013045.1 2270669 2270920 2 + 252 hypothetical protein - none -
fig|6666666.229941.peg.1980 CDS AP013045.1 2271076 2271291 1 + 216 hypothetical protein - none -
fig|6666666.229941.peg.1981 CDS AP013045.1 2272183 2272398 1 + 216 hypothetical protein - none -
fig|6666666.229941.peg.1982 CDS AP013045.1 2272952 2273551 2 + 600 hypothetical protein - none -
fig|6666666.229941.peg.1983 CDS AP013045.1 2273548 2273754 1 + 207 hypothetical protein - none -
fig|6666666.229941.peg.1984 CDS AP013045.1 2273738 2273983 2 + 246 hypothetical protein - none -
fig|6666666.229941.peg.1985 CDS AP013045.1 2274576 2274037 -3 - 540 hypothetical protein - none -
fig|6666666.229941.peg.1986 CDS AP013045.1 2274802 2275095 1 + 294 hypothetical protein - none -
fig|6666666.229941.peg.1987 CDS AP013045.1 2275556 2275110 -2 - 447 hypothetical protein - none -
fig|6666666.229941.peg.1988 CDS AP013045.1 2276078 2275575 -2 - 504 hypothetical protein - none -
fig|6666666.229941.peg.1989 CDS AP013045.1 2278794 2276233 -3 - 2562 Phage (Mu-like) virion morphogenesis protein - none -
fig|6666666.229941.peg.1990 CDS AP013045.1 2279232 2278813 -3 - 420 hypothetical protein - none -
fig|6666666.229941.peg.1991 CDS AP013045.1 2280893 2279283 -2 - 1611 Phage protein - none -
fig|6666666.229941.peg.1992 CDS AP013045.1 2281351 2280890 -1 - 462 hypothetical protein - none -
fig|6666666.229941.peg.1993 CDS AP013045.1 2281412 2281561 2 + 150 hypothetical protein - none -
fig|6666666.229941.peg.1994 CDS AP013045.1 2281561 2282637 1 + 1077 Prophage Clp protease-like protein cAMP signaling in bacteria
fig|6666666.229941.peg.1995 CDS AP013045.1 2282698 2283699 1 + 1002 hypothetical protein - none -
fig|6666666.229941.peg.1996 CDS AP013045.1 2283708 2284133 3 + 426 hypothetical protein - none -
fig|6666666.229941.peg.1997 CDS AP013045.1 2284156 2284761 1 + 606 Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-) - none -
fig|6666666.229941.peg.1998 CDS AP013045.1 2284758 2285255 3 + 498 hypothetical protein - none -
fig|6666666.229941.peg.1999 CDS AP013045.1 2285487 2286038 3 + 552 hypothetical protein - none -
fig|6666666.229941.peg.2000 CDS AP013045.1 2286048 2286536 3 + 489 hypothetical protein - none -
fig|6666666.229941.peg.2001 CDS AP013045.1 2286765 2290010 3 + 3246 Putative peptidoglycan bound protein (LPXTG motif) Lmo1799 homolog - none -
fig|6666666.229941.peg.2002 CDS AP013045.1 2290010 2290834 2 + 825 hypothetical protein - none -
fig|6666666.229941.peg.2003 CDS AP013045.1 2290831 2293959 1 + 3129 Phage-related protein - none -
fig|6666666.229941.peg.2004 CDS AP013045.1 2294005 2294250 1 + 246 hypothetical protein - none -
fig|6666666.229941.peg.2005 CDS AP013045.1 2294259 2294528 3 + 270 hypothetical protein - none -
fig|6666666.229941.peg.2006 CDS AP013045.1 2294534 2294857 2 + 324 hypothetical protein - none -
fig|6666666.229941.peg.2007 CDS AP013045.1 2294864 2295205 2 + 342 hypothetical protein - none -
fig|6666666.229941.peg.2008 CDS AP013045.1 2295216 2296409 3 + 1194 hypothetical protein - none -
fig|6666666.229941.peg.2009 CDS AP013045.1 2296592 2297413 2 + 822 Methyltransferase - none -
fig|6666666.229941.peg.2010 CDS AP013045.1 2297895 2297488 -3 - 408 hypothetical protein - none -
fig|6666666.229941.peg.2011 CDS AP013045.1 2299138 2297951 -1 - 1188 hypothetical protein - none -
fig|6666666.229941.peg.2012 CDS AP013045.1 2300137 2299145 -1 - 993 putative TonB-dependent receptor - none -
fig|6666666.229941.peg.2013 CDS AP013045.1 2300181 2300927 3 + 747 putative TonB-dependent receptor - none -
fig|6666666.229941.peg.2014 CDS AP013045.1 2301397 2300879 -1 - 519 putative TonB-dependent receptor - none -
fig|6666666.229941.peg.2015 CDS AP013045.1 2301675 2301454 -3 - 222 hypothetical protein - none -
fig|6666666.229941.peg.2016 CDS AP013045.1 2303702 2301675 -2 - 2028 putative TonB-dependent receptor - none -
fig|6666666.229941.peg.2017 CDS AP013045.1 2304484 2303759 -1 - 726 hypothetical protein - none -
fig|6666666.229941.peg.2018 CDS AP013045.1 2304801 2305541 3 + 741 putative TonB-dependent receptor - none -
fig|6666666.229941.peg.2019 CDS AP013045.1 2306011 2305493 -1 - 519 putative TonB-dependent receptor - none -
fig|6666666.229941.peg.2020 CDS AP013045.1 2306445 2306233 -3 - 213 hypothetical protein - none -
fig|6666666.229941.peg.2021 CDS AP013045.1 2307796 2306462 -1 - 1335 Arylsulfatase regulator - none -
fig|6666666.229941.peg.2022 CDS AP013045.1 2309696 2307828 -2 - 1869 hypothetical protein - none -
fig|6666666.229941.peg.2023 CDS AP013045.1 2310633 2309917 -3 - 717 Transcriptional regulator - none -
fig|6666666.229941.peg.2024 CDS AP013045.1 2310984 2313770 3 + 2787 FIG00897756: hypothetical protein - none -
fig|6666666.229941.peg.2025 CDS AP013045.1 2314947 2313919 -3 - 1029 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.229941.peg.2026 CDS AP013045.1 2317181 2316261 -2 - 921 Ribokinase (EC 2.7.1.15) D-ribose utilization;
Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.229941.peg.2027 CDS AP013045.1 2317396 2317223 -1 - 174 hypothetical protein - none -
fig|6666666.229941.peg.2028 CDS AP013045.1 2317541 2318710 2 + 1170 Aminopeptidase C (EC 3.4.22.40) Protein degradation
fig|6666666.229941.peg.2029 CDS AP013045.1 2318717 2319181 2 + 465 hypothetical protein - none -
fig|6666666.229941.peg.2030 CDS AP013045.1 2320266 2319307 -3 - 960 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) PhoR-PhoB two-component regulatory system;
Phosphate metabolism
fig|6666666.229941.peg.2031 CDS AP013045.1 2320445 2321398 2 + 954 Pantothenate kinase (EC 2.7.1.33) Coenzyme A Biosynthesis
fig|6666666.229941.peg.2032 CDS AP013045.1 2321549 2322172 2 + 624 Transcriptional regulator, TetR family - none -
fig|6666666.229941.peg.2033 CDS AP013045.1 2322289 2323551 1 + 1263 Outer membrane efflux protein - none -
fig|6666666.229941.peg.2034 CDS AP013045.1 2323600 2324505 1 + 906 FIG00938133: hypothetical protein - none -
fig|6666666.229941.peg.2035 CDS AP013045.1 2324502 2325422 3 + 921 Lipid A export ATP-binding/permease protein MsbA - none -
fig|6666666.229941.peg.2036 CDS AP013045.1 2325419 2326162 2 + 744 Lipid A export ATP-binding/permease protein MsbA - none -
fig|6666666.229941.peg.2037 CDS AP013045.1 2326170 2327276 3 + 1107 ABC transport system, permease component YbhR - none -
fig|6666666.229941.peg.2038 CDS AP013045.1 2327284 2328402 1 + 1119 ABC-type multidrug transport system, permease component - none -
fig|6666666.229941.peg.2039 CDS AP013045.1 2328536 2328979 2 + 444 FIG00522139: hypothetical protein - none -
fig|6666666.229941.peg.2040 CDS AP013045.1 2330586 2329267 -3 - 1320 hypothetical protein - none -
fig|6666666.229941.peg.2041 CDS AP013045.1 2331822 2330683 -3 - 1140 Outer membrane protein SusF Cellulosome
fig|6666666.229941.peg.2042 CDS AP013045.1 2333455 2331872 -1 - 1584 SusD, outer membrane protein Cellulosome
fig|6666666.229941.peg.2043 CDS AP013045.1 2336524 2333480 -1 - 3045 SusC, outer membrane protein involved in starch binding Cellulosome
fig|6666666.229941.peg.2044 CDS AP013045.1 2338670 2336544 -2 - 2127 Alpha-glucosidase SusB (EC 3.2.1.20) Cellulosome
fig|6666666.229941.peg.2045 CDS AP013045.1 2339600 2338875 -2 - 726 Methyltransferase (EC 2.1.1.-) - none -
fig|6666666.229941.peg.2046 CDS AP013045.1 2339956 2341086 1 + 1131 tRNA-guanine transglycosylase (EC 2.4.2.29) CBSS-211586.1.peg.2832;
Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229941.peg.2047 CDS AP013045.1 2341088 2342188 2 + 1101 membrane protein, putative - none -
fig|6666666.229941.peg.2048 CDS AP013045.1 2342289 2342167 -3 - 123 hypothetical protein - none -
fig|6666666.229941.peg.2049 CDS AP013045.1 2342269 2344029 1 + 1761 Polymyxin resistance protein ArnT, undecaprenyl phosphate-alpha-L-Ara4N transferase; Melittin resistance protein PqaB - none -
fig|6666666.229941.peg.2050 CDS AP013045.1 2344144 2344608 1 + 465 hypothetical protein - none -
fig|6666666.229941.peg.2051 CDS AP013045.1 2344990 2344829 -1 - 162 Rubredoxin Rubrerythrin
fig|6666666.229941.peg.2052 CDS AP013045.1 2346210 2345266 -3 - 945 Hydrogen peroxide-inducible genes activator LysR-family proteins in Escherichia coli;
LysR-family proteins in Salmonella enterica Typhimurium;
Oxidative stress;
Thioredoxin-disulfide reductase
fig|6666666.229941.peg.2053 CDS AP013045.1 2346339 2346815 3 + 477 Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1) Oxidative stress;
Oxidative stress;
Oxidative stress
fig|6666666.229941.peg.2054 CDS AP013045.1 2347898 2346894 -2 - 1005 Potassium efflux system KefA protein / Small-conductance mechanosensitive channel Potassium homeostasis
fig|6666666.229941.peg.2055 CDS AP013045.1 2348904 2348149 -3 - 756 ThiF domain protein - none -
fig|6666666.229941.peg.2056 CDS AP013045.1 2349296 2349054 -2 - 243 Diacylglycerol kinase (EC 2.7.1.107) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229941.peg.2057 CDS AP013045.1 2349941 2349789 -2 - 153 hypothetical protein - none -
fig|6666666.229941.peg.2058 CDS AP013045.1 2349952 2351034 1 + 1083 Glucuronyl hydrolase - none -
fig|6666666.229941.peg.2059 CDS AP013045.1 2351092 2354217 1 + 3126 TonB family protein / TonB-dependent receptor Ton and Tol transport systems
fig|6666666.229941.peg.2060 CDS AP013045.1 2354229 2355935 3 + 1707 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.229941.peg.2061 CDS AP013045.1 2356134 2356976 3 + 843 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) D-Galacturonate and D-Glucuronate Utilization
fig|6666666.229941.peg.2062 CDS AP013045.1 2356990 2358132 1 + 1143 hypothetical protein - none -
fig|6666666.229941.peg.2063 CDS AP013045.1 2358129 2359679 3 + 1551 Choline-sulfatase (EC 3.1.6.6) - none -
fig|6666666.229941.peg.2064 CDS AP013045.1 2359716 2361641 3 + 1926 FIG00896938: hypothetical protein - none -
fig|6666666.229941.peg.2065 CDS AP013045.1 2361675 2362715 3 + 1041 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) D-Galacturonate and D-Glucuronate Utilization;
Entner-Doudoroff Pathway
fig|6666666.229941.peg.2066 CDS AP013045.1 2362747 2363538 1 + 792 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) D-Galacturonate and D-Glucuronate Utilization
fig|6666666.229941.peg.2067 CDS AP013045.1 2363601 2364236 3 + 636 4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) D-Galacturonate and D-Glucuronate Utilization;
Entner-Doudoroff Pathway
fig|6666666.229941.peg.2068 CDS AP013045.1 2364285 2365712 3 + 1428 Hexuronate transporter D-Galacturonate and D-Glucuronate Utilization
fig|6666666.229941.peg.2069 CDS AP013045.1 2366485 2367837 1 + 1353 IS1478 transposase - none -
fig|6666666.229941.peg.2070 CDS AP013045.1 2367923 2368075 2 + 153 hypothetical protein - none -
fig|6666666.229941.peg.2071 CDS AP013045.1 2369322 2368117 -3 - 1206 FIG00898264: hypothetical protein - none -
fig|6666666.229941.peg.2072 CDS AP013045.1 2369485 2370711 1 + 1227 ABC transporter permease protein - none -
fig|6666666.229941.peg.2073 CDS AP013045.1 2371000 2371791 1 + 792 Membrane fusion efflux protein - none -
fig|6666666.229941.peg.2074 CDS AP013045.1 2371795 2372484 1 + 690 hypothetical protein - none -
fig|6666666.229941.peg.2075 CDS AP013045.1 2372481 2374238 3 + 1758 hypothetical protein - none -
fig|6666666.229941.peg.2076 CDS AP013045.1 2374738 2374863 1 + 126 hypothetical protein - none -
fig|6666666.229941.peg.2077 CDS AP013045.1 2377424 2378446 2 + 1023 hypothetical protein - none -
fig|6666666.229941.peg.2078 CDS AP013045.1 2378790 2379374 3 + 585 hypothetical protein - none -
fig|6666666.229941.peg.2079 CDS AP013045.1 2379928 2379623 -1 - 306 Mobile element protein - none -
fig|6666666.229941.peg.2080 CDS AP013045.1 2380786 2380076 -1 - 711 Mobile element protein - none -
fig|6666666.229941.peg.2081 CDS AP013045.1 2381612 2381034 -2 - 579 hypothetical protein - none -
fig|6666666.229941.peg.2082 CDS AP013045.1 2382641 2381976 -2 - 666 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC 2.7.7.60) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis;
Stationary phase repair cluster
fig|6666666.229941.peg.2083 CDS AP013045.1 2382855 2382652 -3 - 204 Exodeoxyribonuclease VII small subunit (EC 3.1.11.6) DNA repair, bacterial;
Purine salvage cluster
fig|6666666.229941.peg.2084 CDS AP013045.1 2384202 2382871 -3 - 1332 Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) DNA repair, bacterial;
Purine salvage cluster
fig|6666666.229941.peg.2085 CDS AP013045.1 2385637 2384189 -1 - 1449 Subtilisin-like serine proteases - none -
fig|6666666.229941.peg.2086 CDS AP013045.1 2385626 2385769 2 + 144 hypothetical protein - none -
fig|6666666.229941.peg.2087 CDS AP013045.1 2385842 2386876 2 + 1035 Aspartate--ammonia ligase (EC 6.3.1.1) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.229941.peg.2088 CDS AP013045.1 2386898 2389093 2 + 2196 Glutamine synthetase type III, GlnN (EC 6.3.1.2) Ammonia assimilation;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Glutamine synthetases
fig|6666666.229941.peg.2089 CDS AP013045.1 2389307 2391238 2 + 1932 NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase NAD and NADP cofactor biosynthesis global;
NAD and NADP cofactor biosynthesis global
fig|6666666.229941.peg.2090 CDS AP013045.1 2391253 2393556 1 + 2304 putative patatin-like phospholipase - none -
fig|6666666.229941.peg.2091 CDS AP013045.1 2393888 2394532 2 + 645 FIG053235: Diacylglucosamine hydrolase like Llipid A biosynthesis cluster
fig|6666666.229941.peg.2092 CDS AP013045.1 2394529 2395563 1 + 1035 Agmatine deiminase (EC 3.5.3.12) Arginine and Ornithine Degradation;
Polyamine Metabolism
fig|6666666.229941.peg.2093 CDS AP013045.1 2395569 2396501 3 + 933 N-carbamoylputrescine amidase (3.5.1.53) Arginine and Ornithine Degradation;
Polyamine Metabolism
fig|6666666.229941.peg.2094 CDS AP013045.1 2396506 2397057 1 + 552 RNA polymerase ECF-type sigma factor - none -
fig|6666666.229941.peg.2095 CDS AP013045.1 2397274 2397990 1 + 717 CRISPR repeat RNA endoribonuclease Cas6 CRISPR-associated cluster;
CRISPRs
fig|6666666.229941.peg.2096 CDS AP013045.1 2398017 2398640 3 + 624 hypothetical protein - none -
fig|6666666.229941.peg.2097 CDS AP013045.1 2398708 2399433 1 + 726 hypothetical protein - none -
fig|6666666.229941.peg.2098 CDS AP013045.1 2399426 2400967 2 + 1542 hypothetical protein - none -
fig|6666666.229941.peg.2099 CDS AP013045.1 2400987 2401904 3 + 918 hypothetical protein - none -
fig|6666666.229941.peg.2100 CDS AP013045.1 2402092 2403684 1 + 1593 CRISPR-associated helicase Cas3 CRISPRs
fig|6666666.229941.peg.2101 CDS AP013045.1 2404209 2404763 3 + 555 hypothetical protein - none -
fig|6666666.229941.peg.2102 CDS AP013045.1 2404786 2405784 1 + 999 Fic family protein - none -
fig|6666666.229941.peg.2103 CDS AP013045.1 2406059 2406589 2 + 531 CRISPR-associated RecB family exonuclease Cas4a CRISPRs
fig|6666666.229941.peg.2104 CDS AP013045.1 2406636 2408078 3 + 1443 CRISPR-associated protein, Csm1 family CRISPR-associated cluster;
CRISPRs
fig|6666666.229941.peg.2105 CDS AP013045.1 2408084 2408554 2 + 471 CRISPR-associated protein, Csm2 family CRISPR-associated cluster;
CRISPRs
fig|6666666.229941.peg.2106 CDS AP013045.1 2408564 2409202 2 + 639 CRISPR-associated RAMP Csm3 CRISPR-associated cluster;
CRISPRs
fig|6666666.229941.peg.2107 CDS AP013045.1 2409202 2410197 1 + 996 CRISPR-associated RAMP protein, Csm4 family CRISPR-associated cluster;
CRISPRs
fig|6666666.229941.peg.2108 CDS AP013045.1 2410210 2411358 1 + 1149 CRISPR-associated protein, Csm5 family CRISPR-associated cluster;
CRISPRs
fig|6666666.229941.peg.2109 CDS AP013045.1 2411360 2412604 2 + 1245 CRISPR-associated protein TM1812 - none -
fig|6666666.229941.peg.2110 CDS AP013045.1 2412607 2412972 1 + 366 CRISPR-associated protein TM1812 - none -
fig|6666666.229941.peg.2111 CDS AP013045.1 2412997 2414013 1 + 1017 CRISPR-associated protein Cas1 CRISPRs
fig|6666666.229941.peg.2112 CDS AP013045.1 2414013 2414276 3 + 264 CRISPR-associated protein Cas2 CRISPRs
fig|6666666.229941.peg.2113 CDS AP013045.1 2417263 2417057 -1 - 207 hypothetical protein - none -
fig|6666666.229941.peg.2114 CDS AP013045.1 2418016 2417879 -1 - 138 hypothetical protein - none -
fig|6666666.229941.peg.2115 CDS AP013045.1 2418440 2418622 2 + 183 hypothetical protein - none -
fig|6666666.229941.peg.2116 CDS AP013045.1 2419535 2420059 2 + 525 ferritin - none -
fig|6666666.229941.peg.2117 CDS AP013045.1 2422525 2420324 -1 - 2202 Pyrophosphate-energized proton pump (EC 3.6.1.1) Phosphate metabolism
fig|6666666.229941.peg.2118 CDS AP013045.1 2424322 2423186 -1 - 1137 Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-) Polyamine Metabolism
fig|6666666.229941.peg.2119 CDS AP013045.1 2426705 2424327 -2 - 2379 ATP-dependent DNA helicase UvrD/PcrA DNA repair, bacterial UvrD and related helicases
fig|6666666.229941.peg.2120 CDS AP013045.1 2426876 2427373 2 + 498 DNA-binding protein HU-beta DNA structural proteins, bacterial
fig|6666666.229941.peg.2121 CDS AP013045.1 2427934 2427548 -1 - 387 Dihydroneopterin aldolase (EC 4.1.2.25) Folate Biosynthesis;
Folate biosynthesis cluster
fig|6666666.229941.peg.2122 CDS AP013045.1 2427993 2428412 3 + 420 FIG170317: hypothetical protein - none -
fig|6666666.229941.peg.2123 CDS AP013045.1 2431098 2428405 -3 - 2694 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) Glycogen metabolism;
Maltose and Maltodextrin Utilization
fig|6666666.229941.peg.2124 CDS AP013045.1 2433654 2431117 -3 - 2538 Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) Ribonucleotide reduction
fig|6666666.229941.peg.2125 CDS AP013045.1 2434239 2434069 -3 - 171 Ferredoxin Soluble cytochromes and functionally related electron carriers
fig|6666666.229941.peg.2126 CDS AP013045.1 2434398 2435093 3 + 696 PorT protein - none -
fig|6666666.229941.peg.2127 CDS AP013045.1 2435898 2435080 -3 - 819 Phosphatidate cytidylyltransferase (EC 2.7.7.41) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229941.peg.2128 CDS AP013045.1 2437947 2435947 -3 - 2001 Cell division protein FtsH (EC 3.4.24.-) Bacterial Cell Division;
Cell division-ribosomal stress proteins cluster;
Folate biosynthesis cluster
fig|6666666.229941.peg.2129 CDS AP013045.1 2438330 2437971 -2 - 360 Ribosomal silencing factor RsfA (former Iojap) - none -
fig|6666666.229941.peg.2130 CDS AP013045.1 2439384 2439827 3 + 444 hypothetical protein - none -
fig|6666666.229941.peg.2131 CDS AP013045.1 2440721 2447086 2 + 6366 putative rhamnogalacturonan lyase - none -
fig|6666666.229941.peg.2132 CDS AP013045.1 2447314 2447502 1 + 189 hypothetical protein - none -
fig|6666666.229941.peg.2133 CDS AP013045.1 2447554 2450685 1 + 3132 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.229941.peg.2134 CDS AP013045.1 2450705 2452654 2 + 1950 hypothetical protein - none -
fig|6666666.229941.peg.2135 CDS AP013045.1 2454669 2453725 -3 - 945 Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9) - none -
fig|6666666.229941.peg.2136 CDS AP013045.1 2456360 2454705 -2 - 1656 FIG00939558: hypothetical protein - none -
fig|6666666.229941.peg.2137 CDS AP013045.1 2457691 2456381 -1 - 1311 Dihydrofolate synthase (EC 6.3.2.12) @ Folylpolyglutamate synthase (EC 6.3.2.17) Folate Biosynthesis;
Folate Biosynthesis
fig|6666666.229941.peg.2138 CDS AP013045.1 2457922 2459250 1 + 1329 Predicted ATPase related to phosphate starvation-inducible protein PhoH Phosphate metabolism
fig|6666666.229941.peg.2139 CDS AP013045.1 2459285 2460190 2 + 906 Cobalt-zinc-cadmium resistance protein Cobalt-zinc-cadmium resistance
fig|6666666.229941.peg.2140 CDS AP013045.1 2460873 2460187 -3 - 687 Queuosine Biosynthesis QueC ATPase Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229941.peg.2141 CDS AP013045.1 2461580 2460882 -2 - 699 Putative preQ0 transporter Queuosine-Archaeosine Biosynthesis
fig|6666666.229941.peg.2142 CDS AP013045.1 2461772 2462095 2 + 324 L-fucose mutarotase, type 2 - none -
fig|6666666.229941.peg.2143 CDS AP013045.1 2462891 2462391 -2 - 501 Transposase - none -
fig|6666666.229941.peg.2144 CDS AP013045.1 2463194 2462943 -2 - 252 Mobile element protein - none -
fig|6666666.229941.peg.2145 CDS AP013045.1 2464268 2464711 2 + 444 hypothetical protein - none -
fig|6666666.229941.peg.2146 CDS AP013045.1 2464744 2465805 1 + 1062 Transcriptional regulator - none -
fig|6666666.229941.peg.2147 CDS AP013045.1 2465830 2466915 1 + 1086 Putative exported protein precursor - none -
fig|6666666.229941.peg.2148 CDS AP013045.1 2466954 2467967 3 + 1014 Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8) D-Galacturonate and D-Glucuronate Utilization;
Xylose utilization
fig|6666666.229941.peg.2149 CDS AP013045.1 2467970 2468644 2 + 675 FIG01220323: hypothetical protein - none -
fig|6666666.229941.peg.2150 CDS AP013045.1 2468846 2469850 2 + 1005 hypothetical protein - none -
fig|6666666.229941.peg.2151 CDS AP013045.1 2469906 2470874 3 + 969 hypothetical protein - none -
fig|6666666.229941.peg.2152 CDS AP013045.1 2470855 2471667 1 + 813 FIG00710921: hypothetical protein - none -
fig|6666666.229941.peg.2153 CDS AP013045.1 2472926 2471874 -2 - 1053 Huntington interacting protein HYPE - none -
fig|6666666.229941.peg.2154 CDS AP013045.1 2473382 2473149 -2 - 234 FIG00937640: hypothetical protein - none -
fig|6666666.229941.peg.2155 CDS AP013045.1 2473626 2473372 -3 - 255 FIG00935801: hypothetical protein - none -
fig|6666666.229941.peg.2156 CDS AP013045.1 2474664 2473672 -3 - 993 conserved hypothetical fusion protein - none -
fig|6666666.229941.peg.2157 CDS AP013045.1 2476491 2476231 -3 - 261 hypothetical protein - none -
fig|6666666.229941.peg.2158 CDS AP013045.1 2476749 2476600 -3 - 150 hypothetical protein - none -
fig|6666666.229941.peg.2159 CDS AP013045.1 2477680 2477216 -1 - 465 hypothetical protein - none -
fig|6666666.229941.peg.2160 CDS AP013045.1 2478913 2477747 -1 - 1167 Transposase - none -
fig|6666666.229941.peg.2161 CDS AP013045.1 2479586 2480710 2 + 1125 DNA polymerase III beta subunit (EC 2.7.7.7) Cell Division Subsystem including YidCD;
DNA replication cluster 1
fig|6666666.229941.peg.2162 CDS AP013045.1 2480722 2481486 1 + 765 DNA Pol III Epsilon Chain - none -
fig|6666666.229941.peg.2163 CDS AP013045.1 2481536 2482741 2 + 1206 Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) / Phosphopantothenoylcysteine synthetase (EC 6.3.2.5) Coenzyme A Biosynthesis;
Coenzyme A Biosynthesis
fig|6666666.229941.peg.2164 CDS AP013045.1 2482738 2483643 1 + 906 FIG00896367: hypothetical protein - none -
fig|6666666.229941.peg.2165 CDS AP013045.1 2483647 2485311 1 + 1665 DNA repair protein RecN DNA repair, bacterial
fig|6666666.229941.peg.2166 CDS AP013045.1 2485322 2486074 2 + 753 23S rRNA (guanosine-2@1-O-) -methyltransferase rlmB (EC 2.1.1.-) RNA methylation
fig|6666666.229941.peg.2167 CDS AP013045.1 2486637 2486290 -3 - 348 LSU ribosomal protein L20p Mycobacterium virulence operon involved in protein synthesis (LSU ribosomal proteins);
Ribosome LSU bacterial
fig|6666666.229941.peg.2168 CDS AP013045.1 2486931 2486734 -3 - 198 LSU ribosomal protein L35p Mycobacterium virulence operon involved in protein synthesis (LSU ribosomal proteins);
Ribosome LSU bacterial
fig|6666666.229941.peg.2169 CDS AP013045.1 2487611 2486997 -2 - 615 Translation initiation factor 3 Mycobacterium virulence operon involved in protein synthesis (LSU ribosomal proteins);
Translation initiation factors bacterial
fig|6666666.229941.peg.2170 CDS AP013045.1 2489616 2487658 -3 - 1959 Threonyl-tRNA synthetase (EC 6.1.1.3) tRNA aminoacylation, Thr
fig|6666666.229941.peg.2171 CDS AP013045.1 2491546 2490044 -1 - 1503 FIG00897390: hypothetical protein - none -
fig|6666666.229941.peg.2172 CDS AP013045.1 2493053 2491596 -2 - 1458 Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3) Dipeptidases (EC 3.4.13.-);
Recycling of Peptidoglycan Amino Acids
fig|6666666.229941.peg.2173 CDS AP013045.1 2493197 2493424 2 + 228 hypothetical protein - none -
fig|6666666.229941.peg.2174 CDS AP013045.1 2493439 2494050 1 + 612 FIG00899086: hypothetical protein - none -
fig|6666666.229941.peg.2175 CDS AP013045.1 2495283 2494081 -3 - 1203 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) Chitin and N-acetylglucosamine utilization
fig|6666666.229941.peg.2176 CDS AP013045.1 2496474 2495290 -3 - 1185 NADH-dependent butanol dehydrogenase A (EC 1.1.1.-) - none -
fig|6666666.229941.peg.2177 CDS AP013045.1 2497334 2496633 -2 - 702 transcriptional regulator, Crp/Fnr family Oxidative stress
fig|6666666.229941.peg.2178 CDS AP013045.1 2497401 2497586 3 + 186 hypothetical protein - none -
fig|6666666.229941.peg.2179 CDS AP013045.1 2497667 2498548 2 + 882 hypothetical protein - none -
fig|6666666.229941.peg.2180 CDS AP013045.1 2498560 2498676 1 + 117 hypothetical protein - none -
fig|6666666.229941.peg.2181 CDS AP013045.1 2500739 2498670 -2 - 2070 Beta-galactosidase (EC 3.2.1.23) Galactosylceramide and Sulfatide metabolism;
Lactose and Galactose Uptake and Utilization;
Lactose utilization
fig|6666666.229941.peg.2182 CDS AP013045.1 2501598 2500795 -3 - 804 Beta-phosphoglucomutase (EC 5.4.2.6) Maltose and Maltodextrin Utilization
fig|6666666.229941.peg.2183 CDS AP013045.1 2502096 2501617 -3 - 480 Tryptophan synthase beta chain like (EC 4.2.1.20) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.
fig|6666666.229941.peg.2184 CDS AP013045.1 2503155 2502160 -3 - 996 GldB - none -
fig|6666666.229941.peg.2185 CDS AP013045.1 2504292 2503168 -3 - 1125 DNA polymerase III delta prime subunit (EC 2.7.7.7) - none -
fig|6666666.229941.peg.2186 CDS AP013045.1 2505248 2504295 -2 - 954 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) 5-FCL-like protein;
One-carbon metabolism by tetrahydropterines
fig|6666666.229941.peg.2187 CDS AP013045.1 2505583 2505377 -1 - 207 hypothetical protein - none -
fig|6666666.229941.peg.2188 CDS AP013045.1 2506948 2505590 -1 - 1359 Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps Multidrug Resistance Efflux Pumps;
Riboflavin, FMN and FAD metabolism in plants
fig|6666666.229941.peg.2189 CDS AP013045.1 2507481 2509409 3 + 1929 TonB-dependent receptor Ton and Tol transport systems
fig|6666666.229941.peg.2190 CDS AP013045.1 2509394 2510668 2 + 1275 TonB-dependent receptor Ton and Tol transport systems
fig|6666666.229941.peg.2191 CDS AP013045.1 2510865 2512691 3 + 1827 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.229941.peg.2192 CDS AP013045.1 2513901 2512702 -3 - 1200 conserved hypothetical protein, putative mannosyltransferase - none -
fig|6666666.229941.peg.2193 CDS AP013045.1 2515138 2513894 -1 - 1245 TPR/glycosyl transferase domain protein - none -
fig|6666666.229941.peg.2194 CDS AP013045.1 2516226 2515129 -3 - 1098 UDP-N-acetylglucosamine 2-epimerase (EC 5.1.3.14) CMP-N-acetylneuraminate Biosynthesis
fig|6666666.229941.peg.2195 CDS AP013045.1 2517539 2516247 -2 - 1293 FIG00935947: hypothetical protein - none -
fig|6666666.229941.peg.2196 CDS AP013045.1 2518489 2517536 -1 - 954 FIG00897269: hypothetical protein - none -
fig|6666666.229941.peg.2197 CDS AP013045.1 2519507 2518491 -2 - 1017 RecA protein DNA repair, bacterial;
DNA repair, bacterial RecFOR pathway;
DNA repair system including RecA, MutS and a hypothetical protein
fig|6666666.229941.peg.2198 CDS AP013045.1 2519996 2519541 -2 - 456 Thiol peroxidase, Bcp-type (EC 1.11.1.15) Thioredoxin-disulfide reductase
fig|6666666.229941.peg.2199 CDS AP013045.1 2521261 2520068 -1 - 1194 Carboxynorspermidine dehydrogenase, putative (EC 1.1.1.-) Polyamine Metabolism
fig|6666666.229941.peg.2200 CDS AP013045.1 2521434 2522081 3 + 648 LolA-like outer-membrane lipoprotein carrier protein - none -
fig|6666666.229941.peg.2201 CDS AP013045.1 2522059 2522628 1 + 570 hypothetical protein - none -
fig|6666666.229941.peg.2202 CDS AP013045.1 2522618 2522989 2 + 372 (3R)-hydroxymyristoyl-[ACP] dehydratase (EC 4.2.1.-) - none -
fig|6666666.229941.peg.2203 CDS AP013045.1 2522986 2523768 1 + 783 glycosyl transferase, family 2 - none -
fig|6666666.229941.peg.2204 CDS AP013045.1 2523765 2527262 3 + 3498 FIG00939958: hypothetical protein - none -
fig|6666666.229941.peg.2205 CDS AP013045.1 2527690 2527337 -1 - 354 putative DNA methylase - none -
fig|6666666.229941.peg.2206 CDS AP013045.1 2527679 2529073 2 + 1395 probable hemagglutinin-related protein - none -
fig|6666666.229941.peg.2207 CDS AP013045.1 2529601 2530644 1 + 1044 hypothetical protein - none -
fig|6666666.229941.peg.2208 CDS AP013045.1 2530801 2531256 1 + 456 hypothetical protein - none -
fig|6666666.229941.peg.2209 CDS AP013045.1 2531523 2533757 3 + 2235 Rhs family protein - none -
fig|6666666.229941.peg.2210 CDS AP013045.1 2534355 2535227 3 + 873 Rhs family protein - none -
fig|6666666.229941.peg.2211 CDS AP013045.1 2536044 2536913 3 + 870 Rhs family protein - none -
fig|6666666.229941.peg.2212 CDS AP013045.1 2537511 2538386 3 + 876 Rhs family protein - none -
fig|6666666.229941.peg.2213 CDS AP013045.1 2540057 2539065 -2 - 993 Mobilization protein BmgA - none -
fig|6666666.229941.peg.2214 CDS AP013045.1 2540451 2540041 -3 - 411 hypothetical protein - none -
fig|6666666.229941.peg.2215 CDS AP013045.1 2540962 2540753 -1 - 210 Conjugative transposon protein TraB Conjugative transposon, Bacteroidales
fig|6666666.229941.peg.2216 CDS AP013045.1 2541530 2541264 -2 - 267 Conjugative transposon protein TraP @ DNA primase (EC 2.7.7.-) CBSS-349161.4.peg.2417;
Macromolecular synthesis operon
fig|6666666.229941.peg.2217 CDS AP013045.1 2541869 2541669 -2 - 201 Conjugative transposon protein TraP @ DNA primase (EC 2.7.7.-) CBSS-349161.4.peg.2417;
Macromolecular synthesis operon
fig|6666666.229941.peg.2218 CDS AP013045.1 2541888 2542172 3 + 285 hypothetical protein - none -
fig|6666666.229941.peg.2219 CDS AP013045.1 2542216 2542353 1 + 138 hypothetical protein - none -
fig|6666666.229941.peg.2220 CDS AP013045.1 2543014 2543292 1 + 279 FIG00938706: hypothetical protein - none -
fig|6666666.229941.peg.2221 CDS AP013045.1 2543295 2543582 3 + 288 FIG00938293: hypothetical protein - none -
fig|6666666.229941.peg.2222 CDS AP013045.1 2543748 2544152 3 + 405 Very-short-patch mismatch repair endonuclease (G-T specific) DNA repair, bacterial
fig|6666666.229941.peg.2223 CDS AP013045.1 2545111 2545377 1 + 267 FIG00936644: hypothetical protein - none -
fig|6666666.229941.peg.2224 CDS AP013045.1 2545390 2545608 1 + 219 hypothetical protein - none -
fig|6666666.229941.peg.2225 CDS AP013045.1 2545620 2545916 3 + 297 hypothetical protein - none -
fig|6666666.229941.peg.2226 CDS AP013045.1 2545913 2546503 2 + 591 hypothetical protein - none -
fig|6666666.229941.peg.2227 CDS AP013045.1 2546521 2546940 1 + 420 FIG00937340: hypothetical protein - none -
fig|6666666.229941.peg.2228 CDS AP013045.1 2546963 2547493 2 + 531 Antirestriction protein ArdA - none -
fig|6666666.229941.peg.2229 CDS AP013045.1 2547510 2548784 3 + 1275 FIG00937820: hypothetical protein - none -
fig|6666666.229941.peg.2230 CDS AP013045.1 2548795 2549028 1 + 234 FIG00937640: hypothetical protein - none -
fig|6666666.229941.peg.2231 CDS AP013045.1 2549501 2550685 2 + 1185 8-amino-7-oxononanoate synthase (EC 2.3.1.47) Biotin biosynthesis Experimental
fig|6666666.229941.peg.2232 CDS AP013045.1 2550789 2551871 3 + 1083 N-Acyltransferase - none -
fig|6666666.229941.peg.2233 CDS AP013045.1 2551874 2553643 2 + 1770 MutS-related protein, family 1 DNA repair, bacterial MutL-MutS system
fig|6666666.229941.peg.2234 CDS AP013045.1 2553640 2555424 1 + 1785 hypothetical protein - none -
fig|6666666.229941.peg.2235 CDS AP013045.1 2555424 2556458 3 + 1035 N-Acyltransferase - none -
fig|6666666.229941.peg.2236 CDS AP013045.1 2556455 2557252 2 + 798 Methionyl-tRNA formyltransferase (EC 2.1.2.9) Conserved gene cluster associated with Met-tRNA formyltransferase;
Translation initiation factors bacterial
fig|6666666.229941.peg.2237 CDS AP013045.1 2557989 2557294 -3 - 696 Transcriptional regulator - none -
fig|6666666.229941.peg.2238 CDS AP013045.1 2558611 2558096 -1 - 516 lysozyme-related protein - none -
fig|6666666.229941.peg.2239 CDS AP013045.1 2559056 2558595 -2 - 462 Conjugative transposon protein TraQ Conjugative transposon, Bacteroidales
fig|6666666.229941.peg.2240 CDS AP013045.1 2559935 2559081 -2 - 855 Conjugative transposon primase TraP @ DNA primase (EC 2.7.7.-) CBSS-349161.4.peg.2417;
Conjugative transposon, Bacteroidales;
Macromolecular synthesis operon
fig|6666666.229941.peg.2241 CDS AP013045.1 2560507 2559935 -1 - 573 Conjugative transposon protein TraO Conjugative transposon, Bacteroidales
fig|6666666.229941.peg.2242 CDS AP013045.1 2561441 2560521 -2 - 921 Conjugative transposon protein TraN Conjugative transposon, Bacteroidales
fig|6666666.229941.peg.2243 CDS AP013045.1 2562840 2561479 -3 - 1362 Conjugative transposon protein TraM Conjugative transposon, Bacteroidales
fig|6666666.229941.peg.2244 CDS AP013045.1 2563123 2562791 -1 - 333 Conjugative transposon protein TraL Conjugative transposon, Bacteroidales
fig|6666666.229941.peg.2245 CDS AP013045.1 2563743 2563120 -3 - 624 Conjugative transposon protein TraK Conjugative transposon, Bacteroidales
fig|6666666.229941.peg.2246 CDS AP013045.1 2564850 2563750 -3 - 1101 Conjugative transposon protein TraJ Conjugative transposon, Bacteroidales
fig|6666666.229941.peg.2247 CDS AP013045.1 2565455 2564844 -2 - 612 Conjugative transposon protein TraI Conjugative transposon, Bacteroidales
fig|6666666.229941.peg.2248 CDS AP013045.1 2567992 2565506 -1 - 2487 Conjugative transposon protein TraG Conjugative transposon, Bacteroidales
fig|6666666.229941.peg.2249 CDS AP013045.1 2568366 2567989 -3 - 378 Conjugative transposon protein TraF Conjugative transposon, Bacteroidales
fig|6666666.229941.peg.2250 CDS AP013045.1 2570262 2568589 -3 - 1674 Retron-type RNA-directed DNA polymerase (EC 2.7.7.49) Group II intron-associated genes
fig|6666666.229941.peg.2251 CDS AP013045.1 2571083 2570865 -2 - 219 Conjugative transposon protein TraE Conjugative transposon, Bacteroidales
fig|6666666.229941.peg.2252 CDS AP013045.1 2571831 2571226 -3 - 606 Conjugative transposon protein TraD Conjugative transposon, Bacteroidales
fig|6666666.229941.peg.2253 CDS AP013045.1 2572559 2571819 -2 - 741 Conjugative transposon protein TraA Conjugative transposon, Bacteroidales
fig|6666666.229941.peg.2254 CDS AP013045.1 2573176 2572589 -1 - 588 FIG00936139: hypothetical protein - none -
fig|6666666.229941.peg.2255 CDS AP013045.1 2573526 2573173 -3 - 354 Conjugative transposon protein TraB Conjugative transposon, Bacteroidales
fig|6666666.229941.peg.2256 CDS AP013045.1 2573980 2573552 -1 - 429 Conjugative transposon protein TraB Conjugative transposon, Bacteroidales
fig|6666666.229941.peg.2257 CDS AP013045.1 2574746 2573964 -2 - 783 Conjugative transposon protein TraA Conjugative transposon, Bacteroidales
fig|6666666.229941.peg.2258 CDS AP013045.1 2575599 2575363 -3 - 237 hypothetical protein - none -
fig|6666666.229941.peg.2259 CDS AP013045.1 2575598 2575954 2 + 357 hypothetical protein clusted with conjugative transposons, BF0131 Conjugative transposon, Bacteroidales
fig|6666666.229941.peg.2260 CDS AP013045.1 2576149 2577174 1 + 1026 Putative conjugative transposon mobilization protein BF0132 Conjugative transposon, Bacteroidales
fig|6666666.229941.peg.2261 CDS AP013045.1 2577337 2579346 1 + 2010 Putative mobilization protein BF0133 Conjugative transposon, Bacteroidales
fig|6666666.229941.peg.2262 CDS AP013045.1 2579651 2579854 2 + 204 hypothetical protein - none -
fig|6666666.229941.peg.2263 CDS AP013045.1 2580399 2580040 -3 - 360 tetracycline resistance element mobilization regulatory protein rteC - none -
fig|6666666.229941.peg.2264 CDS AP013045.1 2583279 2581186 -3 - 2094 ABC transporter ATP-binding protein - none -
fig|6666666.229941.peg.2265 CDS AP013045.1 2585287 2583479 -1 - 1809 Putative cytoplasmic protein - none -
fig|6666666.229941.peg.2266 CDS AP013045.1 2587633 2585303 -1 - 2331 Outer membrane receptor proteins, mostly Fe transport Hemin transport system
fig|6666666.229941.peg.2267 CDS AP013045.1 2589480 2587651 -3 - 1830 hypothetical protein - none -
fig|6666666.229941.peg.2268 CDS AP013045.1 2590648 2589482 -1 - 1167 Transcriptional regulator - none -
fig|6666666.229941.peg.2269 CDS AP013045.1 2592841 2591018 -1 - 1824 8-amino-7-oxononanoate synthase( EC:2.3.1.47 ) - none -
fig|6666666.229941.peg.2270 CDS AP013045.1 2593141 2594535 1 + 1395 FIG00936597: hypothetical protein - none -
fig|6666666.229941.peg.2271 CDS AP013045.1 2594570 2596699 2 + 2130 DNA topoisomerase III, Bacteroidales-type (EC 5.99.1.2) DNA topoisomerases, Type I, ATP-independent
fig|6666666.229941.peg.2272 CDS AP013045.1 2596837 2597268 1 + 432 hypothetical protein - none -
fig|6666666.229941.peg.2273 CDS AP013045.1 2597255 2601571 2 + 4317 putative DNA methylase - none -
fig|6666666.229941.peg.2274 CDS AP013045.1 2602222 2603898 1 + 1677 Mobile element protein - none -
fig|6666666.229941.peg.2275 CDS AP013045.1 2604053 2605207 2 + 1155 putative DNA methylase - none -
fig|6666666.229941.peg.2276 CDS AP013045.1 2605581 2605312 -3 - 270 FIG00938987: hypothetical protein - none -
fig|6666666.229941.peg.2277 CDS AP013045.1 2605894 2605613 -1 - 282 FIG00936922: hypothetical protein - none -
fig|6666666.229941.peg.2278 CDS AP013045.1 2606188 2606466 1 + 279 FIG00938698: hypothetical protein - none -
fig|6666666.229941.peg.2279 CDS AP013045.1 2606503 2606805 1 + 303 FIG00936566: hypothetical protein - none -
fig|6666666.229941.peg.2280 CDS AP013045.1 2607002 2606850 -2 - 153 hypothetical protein - none -
fig|6666666.229941.peg.2281 CDS AP013045.1 2608882 2607647 -1 - 1236 Integrase - none -
fig|6666666.229941.peg.2282 CDS AP013045.1 2608956 2609090 3 + 135 hypothetical protein - none -
fig|6666666.229941.peg.2283 CDS AP013045.1 2611976 2609613 -2 - 2364 FIG01232333: hypothetical protein - none -
fig|6666666.229941.peg.2284 CDS AP013045.1 2612980 2611973 -1 - 1008 FIG01231397: hypothetical protein - none -
fig|6666666.229941.peg.2285 CDS AP013045.1 2615771 2612970 -2 - 2802 Endonuclease - none -
fig|6666666.229941.peg.2286 CDS AP013045.1 2617238 2615772 -2 - 1467 FIG00715517: hypothetical protein - none -
fig|6666666.229941.peg.2287 CDS AP013045.1 2618035 2617250 -1 - 786 hypothetical protein - none -
fig|6666666.229941.peg.2288 CDS AP013045.1 2619294 2618032 -3 - 1263 DNA-cytosine methyltransferase (EC 2.1.1.37) DNA repair, bacterial
fig|6666666.229941.peg.2289 CDS AP013045.1 2620563 2619349 -3 - 1215 Integrase - none -
fig|6666666.229941.peg.2290 CDS AP013045.1 2621804 2620575 -2 - 1230 Integrase - none -
fig|6666666.229941.peg.2291 CDS AP013045.1 2621983 2621828 -1 - 156 hypothetical protein - none -
fig|6666666.229941.peg.2292 CDS AP013045.1 2623103 2622324 -2 - 780 Transposase - none -
fig|6666666.229941.peg.2293 CDS AP013045.1 2623370 2623483 2 + 114 hypothetical protein - none -
fig|6666666.229941.peg.2294 CDS AP013045.1 2623679 2624758 2 + 1080 Outer membrane protein romA - none -
fig|6666666.229941.peg.2295 CDS AP013045.1 2624877 2625368 3 + 492 DNA polymerase III epsilon subunit (EC 2.7.7.7) - none -
fig|6666666.229941.peg.2296 CDS AP013045.1 2625967 2625788 -1 - 180 hypothetical protein - none -
fig|6666666.229941.peg.2297 CDS AP013045.1 2625991 2629020 1 + 3030 TonB family protein / TonB-dependent receptor Ton and Tol transport systems
fig|6666666.229941.peg.2298 CDS AP013045.1 2629043 2630677 2 + 1635 Putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.229941.peg.2299 CDS AP013045.1 2630755 2632224 1 + 1470 hypothetical protein - none -
fig|6666666.229941.peg.2300 CDS AP013045.1 2632249 2633709 1 + 1461 tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins Ton and Tol transport systems
fig|6666666.229941.peg.2301 CDS AP013045.1 2633996 2634148 2 + 153 hypothetical protein - none -
fig|6666666.229941.peg.2302 CDS AP013045.1 2634290 2636488 2 + 2199 Thiamin-regulated outer membrane receptor Omr1 Thiamin biosynthesis
fig|6666666.229941.peg.2303 CDS AP013045.1 2636524 2637186 1 + 663 Predicted thiamin transporter PnuT Thiamin biosynthesis
fig|6666666.229941.peg.2304 CDS AP013045.1 2639582 2637174 -2 - 2409 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase (EC 6.3.2.10) Peptidoglycan biosynthesis--gjo
fig|6666666.229941.peg.2305 CDS AP013045.1 2640643 2639651 -1 - 993 FIG00898560: hypothetical protein - none -
fig|6666666.229941.peg.2306 CDS AP013045.1 2641164 2642579 3 + 1416 Peptidase, M23/M37 family - none -
fig|6666666.229941.peg.2307 CDS AP013045.1 2642663 2643211 2 + 549 FIG00651728: hypothetical protein - none -
fig|6666666.229941.peg.2308 CDS AP013045.1 2643267 2644475 3 + 1209 hypothetical protein - none -
fig|6666666.229941.peg.2309 CDS AP013045.1 2644488 2645243 3 + 756 Triosephosphate isomerase (EC 5.3.1.1) Glycolysis and Gluconeogenesis
fig|6666666.229941.peg.2310 CDS AP013045.1 2645276 2645752 2 + 477 hypothetical protein - none -
fig|6666666.229941.peg.2311 CDS AP013045.1 2645755 2646336 1 + 582 GTP cyclohydrolase I (EC 3.5.4.16) type 1 Folate Biosynthesis;
Folate biosynthesis cluster;
Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.229941.peg.2312 CDS AP013045.1 2646400 2647014 1 + 615 TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA - none -
fig|6666666.229941.peg.2313 CDS AP013045.1 2647294 2647127 -1 - 168 hypothetical protein - none -
fig|6666666.229941.peg.2314 CDS AP013045.1 2647413 2647300 -3 - 114 hypothetical protein - none -
fig|6666666.229941.peg.2315 CDS AP013045.1 2648025 2647420 -3 - 606 RNA polymerase ECF-type sigma factor - none -
fig|6666666.229941.peg.2316 CDS AP013045.1 2648316 2649980 3 + 1665 Probable dipeptidase (EC 3.4.-.-) - none -
fig|6666666.229941.peg.2317 CDS AP013045.1 2650010 2650477 2 + 468 hypothetical protein - none -
fig|6666666.229941.peg.2318 CDS AP013045.1 2653249 2650643 -1 - 2607 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins Ton and Tol transport systems
fig|6666666.229941.peg.2319 CDS AP013045.1 2653861 2653517 -1 - 345 hypothetical protein - none -
fig|6666666.229941.peg.2320 CDS AP013045.1 2654138 2654722 2 + 585 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase
fig|6666666.229941.peg.2321 CDS AP013045.1 2654755 2655471 1 + 717 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase
fig|6666666.229941.peg.2322 CDS AP013045.1 2655486 2656223 3 + 738 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase;
Potassium homeostasis
fig|6666666.229941.peg.2323 CDS AP013045.1 2656421 2657860 2 + 1440 Transglutaminase-like enzymes, putative cysteine proteases - none -
fig|6666666.229941.peg.2324 CDS AP013045.1 2657973 2658863 3 + 891 Hydroxypyruvate isomerase (EC 5.3.1.22) - none -
fig|6666666.229941.peg.2325 CDS AP013045.1 2658936 2659196 3 + 261 hypothetical protein - none -
fig|6666666.229941.peg.2326 CDS AP013045.1 2659253 2659375 2 + 123 hypothetical protein - none -
fig|6666666.229941.peg.2327 CDS AP013045.1 2659886 2659362 -2 - 525 hypothetical protein - none -
fig|6666666.229941.peg.2328 CDS AP013045.1 2660967 2659873 -3 - 1095 hypothetical protein - none -
fig|6666666.229941.peg.2329 CDS AP013045.1 2661494 2661165 -2 - 330 hypothetical protein - none -
fig|6666666.229941.peg.2330 CDS AP013045.1 2663346 2661658 -3 - 1689 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.229941.peg.2331 CDS AP013045.1 2666321 2663367 -2 - 2955 SusC, outer membrane protein involved in starch binding Cellulosome
fig|6666666.229941.peg.2332 CDS AP013045.1 2666529 2666383 -3 - 147 hypothetical protein - none -
fig|6666666.229941.peg.2333 CDS AP013045.1 2666491 2666613 1 + 123 hypothetical protein - none -
fig|6666666.229941.peg.2334 CDS AP013045.1 2666573 2666695 2 + 123 hypothetical protein - none -
fig|6666666.229941.peg.2335 CDS AP013045.1 2667082 2666771 -1 - 312 conserved hypothetical protein, putative membrane protein - none -
fig|6666666.229941.peg.2336 CDS AP013045.1 2669409 2667097 -3 - 2313 TonB-dependent receptor Ton and Tol transport systems
fig|6666666.229941.peg.2337 CDS AP013045.1 2670845 2669724 -2 - 1122 tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins Ton and Tol transport systems
fig|6666666.229941.peg.2338 CDS AP013045.1 2671766 2671900 2 + 135 hypothetical protein - none -
fig|6666666.229941.peg.2339 CDS AP013045.1 2673378 2671999 -3 - 1380 Dihydroorotase (EC 3.5.2.3) De Novo Pyrimidine Synthesis
fig|6666666.229941.peg.2340 CDS AP013045.1 2674157 2673375 -2 - 783 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE Copper homeostasis: copper tolerance;
Lipoprotein Biosynthesis;
tRNA-methylthiotransferase containing cluster;
tRNA-methylthiotransferase containing cluster
fig|6666666.229941.peg.2341 CDS AP013045.1 2675814 2674279 -3 - 1536 COG1649 predicted glycoside hydrolase - none -
fig|6666666.229941.peg.2342 CDS AP013045.1 2676910 2675867 -1 - 1044 NAD-dependent epimerase/dehydratase family protein - none -
fig|6666666.229941.peg.2343 CDS AP013045.1 2676998 2677120 2 + 123 hypothetical protein - none -
fig|6666666.229941.peg.2344 CDS AP013045.1 2677824 2677162 -3 - 663 hypothetical protein - none -
fig|6666666.229941.peg.2345 CDS AP013045.1 2679641 2677851 -2 - 1791 LysM-repeat proteins and domains - none -
fig|6666666.229941.peg.2346 CDS AP013045.1 2679796 2679659 -1 - 138 hypothetical protein - none -
fig|6666666.229941.peg.2347 CDS AP013045.1 2679899 2681125 2 + 1227 hypothetical protein - none -
fig|6666666.229941.peg.2348 CDS AP013045.1 2681125 2682099 1 + 975 Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-) Murein Hydrolases
fig|6666666.229941.peg.2349 CDS AP013045.1 2682132 2685005 3 + 2874 Excinuclease ABC subunit A DNA repair, UvrABC system
fig|6666666.229941.peg.2350 CDS AP013045.1 2685010 2685228 1 + 219 FIG00899317: hypothetical protein - none -
fig|6666666.229941.peg.2351 CDS AP013045.1 2685270 2685905 3 + 636 FIG000605: protein co-occurring with transport systems (COG1739) Transport system clustering with HemG
fig|6666666.229941.peg.2352 CDS AP013045.1 2686315 2685977 -1 - 339 hypothetical protein - none -
fig|6666666.229941.peg.2353 CDS AP013045.1 2686502 2686371 -2 - 132 hypothetical protein - none -
fig|6666666.229941.peg.2354 CDS AP013045.1 2686550 2687728 2 + 1179 Xaa-Pro aminopeptidase (EC 3.4.11.9) Aminopeptidases (EC 3.4.11.-)
fig|6666666.229941.peg.2355 CDS AP013045.1 2687725 2689416 1 + 1692 Alkaline phosphatase (EC 3.1.3.1) Phosphate metabolism
fig|6666666.229941.peg.2356 CDS AP013045.1 2692129 2690291 -1 - 1839 Gll1663 protein - none -
fig|6666666.229941.peg.2357 CDS AP013045.1 2692536 2692132 -3 - 405 hypothetical protein - none -
fig|6666666.229941.peg.2358 CDS AP013045.1 2693022 2693183 3 + 162 hypothetical protein - none -
fig|6666666.229941.peg.2359 CDS AP013045.1 2694500 2693487 -2 - 1014 hypothetical protein - none -
fig|6666666.229941.peg.2360 CDS AP013045.1 2695508 2694561 -2 - 948 Lysyl endopeptidase (EC 3.4.21.50) Serine endopeptidase (EC 3.4.21.-)
fig|6666666.229941.peg.2361 CDS AP013045.1 2696269 2695658 -1 - 612 hypothetical protein - none -
fig|6666666.229941.peg.2362 CDS AP013045.1 2696629 2696856 1 + 228 Zinc metalloproteinase precursor (EC 3.4.24.29) / aureolysin Listeria Pathogenicity Island LIPI-1 extended
fig|6666666.229941.peg.2363 CDS AP013045.1 2697288 2697148 -3 - 141 hypothetical protein - none -
fig|6666666.229941.peg.2364 CDS AP013045.1 2699234 2698221 -2 - 1014 hypothetical protein - none -
fig|6666666.229941.peg.2365 CDS AP013045.1 2700242 2699295 -2 - 948 Lysyl endopeptidase (EC 3.4.21.50) Serine endopeptidase (EC 3.4.21.-)
fig|6666666.229941.peg.2366 CDS AP013045.1 2701003 2700392 -1 - 612 hypothetical protein - none -
fig|6666666.229941.peg.2367 CDS AP013045.1 2701521 2701661 3 + 141 hypothetical protein - none -
fig|6666666.229941.peg.2368 CDS AP013045.1 2702243 2701953 -2 - 291 Zinc metalloproteinase precursor (EC 3.4.24.29) / aureolysin Listeria Pathogenicity Island LIPI-1 extended
fig|6666666.229941.peg.2369 CDS AP013045.1 2704326 2702533 -3 - 1794 Zinc metalloproteinase precursor (EC 3.4.24.29) / aureolysin Listeria Pathogenicity Island LIPI-1 extended
fig|6666666.229941.peg.2370 CDS AP013045.1 2704781 2704323 -2 - 459 hypothetical protein - none -
fig|6666666.229941.peg.2371 CDS AP013045.1 2704967 2704836 -2 - 132 hypothetical protein - none -
fig|6666666.229941.peg.2372 CDS AP013045.1 2705312 2705452 2 + 141 hypothetical protein - none -
fig|6666666.229941.peg.2373 CDS AP013045.1 2706034 2705744 -1 - 291 Zinc metalloproteinase precursor (EC 3.4.24.29) / aureolysin Listeria Pathogenicity Island LIPI-1 extended
fig|6666666.229941.peg.2374 CDS AP013045.1 2707733 2706324 -2 - 1410 Zinc metalloproteinase precursor (EC 3.4.24.29) / aureolysin Listeria Pathogenicity Island LIPI-1 extended
fig|6666666.229941.peg.2375 CDS AP013045.1 2710253 2709240 -2 - 1014 hypothetical protein - none -
fig|6666666.229941.peg.2376 CDS AP013045.1 2711261 2710314 -2 - 948 Lysyl endopeptidase (EC 3.4.21.50) ## LysXxx (including Pro) Serine endopeptidase (EC 3.4.21.-)
fig|6666666.229941.peg.2377 CDS AP013045.1 2712022 2711411 -1 - 612 hypothetical protein - none -
fig|6666666.229941.peg.2378 CDS AP013045.1 2712540 2712680 3 + 141 hypothetical protein - none -
fig|6666666.229941.peg.2379 CDS AP013045.1 2713262 2712972 -2 - 291 Zinc metalloproteinase precursor (EC 3.4.24.29) / aureolysin Listeria Pathogenicity Island LIPI-1 extended
fig|6666666.229941.peg.2380 CDS AP013045.1 2714961 2713552 -3 - 1410 Zinc metalloproteinase precursor (EC 3.4.24.29) / aureolysin Listeria Pathogenicity Island LIPI-1 extended
fig|6666666.229941.peg.2381 CDS AP013045.1 2716190 2716077 -2 - 114 hypothetical protein - none -
fig|6666666.229941.peg.2382 CDS AP013045.1 2717024 2717164 2 + 141 hypothetical protein - none -
fig|6666666.229941.peg.2383 CDS AP013045.1 2718852 2717434 -3 - 1419 Zinc metalloproteinase precursor (EC 3.4.24.29) / aureolysin Listeria Pathogenicity Island LIPI-1 extended
fig|6666666.229941.peg.2384 CDS AP013045.1 2719767 2719955 3 + 189 hypothetical protein - none -
fig|6666666.229941.peg.2385 CDS AP013045.1 2719952 2720095 2 + 144 hypothetical protein - none -
fig|6666666.229941.peg.2386 CDS AP013045.1 2724101 2720472 -2 - 3630 Beta-mannosidase (EC 3.2.1.25) Mannose Metabolism
fig|6666666.229941.peg.2387 CDS AP013045.1 2724211 2724098 -1 - 114 hypothetical protein - none -
fig|6666666.229941.peg.2388 CDS AP013045.1 2724748 2724245 -1 - 504 Transcriptional activator RfaH Transcription factors bacterial
fig|6666666.229941.peg.2389 CDS AP013045.1 2726226 2724745 -3 - 1482 COG1649 predicted glycoside hydrolase - none -
fig|6666666.229941.peg.2390 CDS AP013045.1 2727028 2726234 -1 - 795 Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) - none -
fig|6666666.229941.peg.2391 CDS AP013045.1 2727968 2727030 -2 - 939 Thioredoxin reductase (EC 1.8.1.9) Thioredoxin-disulfide reductase
fig|6666666.229941.peg.2392 CDS AP013045.1 2728624 2728010 -1 - 615 hypothetical protein - none -
fig|6666666.229941.peg.2393 CDS AP013045.1 2731098 2728651 -3 - 2448 Cell division protein FtsK Bacterial Cell Division;
Bacterial Cytoskeleton;
Bacterial RNA-metabolizing Zn-dependent hydrolases
fig|6666666.229941.peg.2394 CDS AP013045.1 2731384 2733153 1 + 1770 Aspartyl-tRNA synthetase (EC 6.1.1.12) tRNA aminoacylation, Asp and Asn
fig|6666666.229941.peg.2395 CDS AP013045.1 2733168 2734265 3 + 1098 FIG137478: Hypothetical protein YbgI - none -
fig|6666666.229941.peg.2396 CDS AP013045.1 2734277 2735266 2 + 990 FIG137478: Hypothetical protein tRNA modification Bacteria
fig|6666666.229941.peg.2397 CDS AP013045.1 2735309 2736661 2 + 1353 tRNA(Ile)-lysidine synthetase (EC 6.3.4.19) Cell division-ribosomal stress proteins cluster;
Folate biosynthesis cluster;
tRNA modification Bacteria;
tRNA processing
fig|6666666.229941.peg.2398 CDS AP013045.1 2736885 2738861 3 + 1977 Transcription termination factor Rho Transcription factors bacterial
fig|6666666.229941.peg.2399 CDS AP013045.1 2738991 2739119 3 + 129 hypothetical protein - none -
fig|6666666.229941.peg.2400 CDS AP013045.1 2739123 2739689 3 + 567 Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) Thioredoxin-disulfide reductase
fig|6666666.229941.peg.2401 CDS AP013045.1 2739921 2740613 3 + 693 hypothetical protein - none -
fig|6666666.229941.peg.2402 CDS AP013045.1 2740610 2741212 2 + 603 LuxR family transcriptional regulator - none -
fig|6666666.229941.peg.2403 CDS AP013045.1 2741327 2743003 2 + 1677 Predicted cobalt transporter in Bacteroides_Porphyromonas - none -
fig|6666666.229941.peg.2404 CDS AP013045.1 2744709 2743150 -3 - 1560 hypothetical protein - none -
fig|6666666.229941.peg.2405 CDS AP013045.1 2744830 2744970 1 + 141 hypothetical protein - none -
fig|6666666.229941.peg.2406 CDS AP013045.1 2745413 2744982 -2 - 432 hypothetical protein - none -
fig|6666666.229941.peg.2407 CDS AP013045.1 2747975 2746071 -2 - 1905 Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3) Na+ translocating decarboxylases and related biotin-dependent enzymes;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229941.peg.2408 CDS AP013045.1 2749777 2748218 -1 - 1560 L-lactate permease Lactate utilization
fig|6666666.229941.peg.2409 CDS AP013045.1 2750401 2749820 -1 - 582 Predicted L-lactate dehydrogenase, hypothetical protein subunit SO1518 Lactate utilization
fig|6666666.229941.peg.2410 CDS AP013045.1 2751708 2750398 -3 - 1311 Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF Lactate utilization
fig|6666666.229941.peg.2411 CDS AP013045.1 2752529 2751786 -2 - 744 Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE Lactate utilization
fig|6666666.229941.peg.2412 CDS AP013045.1 2753863 2752574 -1 - 1290 hypothetical protein - none -
fig|6666666.229941.peg.2413 CDS AP013045.1 2754316 2754852 1 + 537 Nudix hydrolase family protein - none -
fig|6666666.229941.peg.2414 CDS AP013045.1 2754908 2755333 2 + 426 Amino acid-binding ACT Aromatic amino acid interconversions with aryl acids
fig|6666666.229941.peg.2415 CDS AP013045.1 2755380 2756207 3 + 828 lipoprotein protein, putative - none -
fig|6666666.229941.peg.2416 CDS AP013045.1 2756233 2756571 1 + 339 FIG00936941: hypothetical protein - none -
fig|6666666.229941.peg.2417 CDS AP013045.1 2756571 2757032 3 + 462 FIG00897728: hypothetical protein - none -
fig|6666666.229941.peg.2418 CDS AP013045.1 2757046 2757888 1 + 843 Monofunctional biosynthetic peptidoglycan transglycosylase (EC 2.4.2.-) - none -
fig|6666666.229941.peg.2419 CDS AP013045.1 2757885 2758568 3 + 684 Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase Lipoic acid metabolism;
Lipoic acid synthesis cluster
fig|6666666.229941.peg.2420 CDS AP013045.1 2759045 2758575 -2 - 471 GldH - none -
fig|6666666.229941.peg.2421 CDS AP013045.1 2760393 2759038 -3 - 1356 Signal peptidase-like protein Heat shock dnaK gene cluster extended
fig|6666666.229941.peg.2422 CDS AP013045.1 2761590 2760403 -3 - 1188 8-amino-7-oxononanoate synthase (EC 2.3.1.47) Biotin biosynthesis Experimental
fig|6666666.229941.peg.2423 CDS AP013045.1 2762475 2761714 -3 - 762 tRNA (adenine37-N(6))-methyltransferase TrmN6 (EC 2.1.1.223) RNA methylation
fig|6666666.229941.peg.2424 CDS AP013045.1 2763053 2762532 -2 - 522 hypothetical protein - none -
fig|6666666.229941.peg.2425 CDS AP013045.1 2763234 2764592 3 + 1359 Catalyzes the cleavage of p-aminobenzoyl-glutamate to p-aminobenzoate and glutamate, subunit A - none -
fig|6666666.229941.peg.2426 CDS AP013045.1 2764589 2765851 2 + 1263 S-adenosylhomocysteine deaminase (EC 3.5.4.28); Methylthioadenosine deaminase - none -
fig|6666666.229941.peg.2427 CDS AP013045.1 2766511 2765930 -1 - 582 hypothetical protein - none -
fig|6666666.229941.peg.2428 CDS AP013045.1 2766610 2767578 1 + 969 hypothetical protein - none -
fig|6666666.229941.peg.2429 CDS AP013045.1 2767599 2768048 3 + 450 Alanyl-tRNA synthetase (EC 6.1.1.7) CBSS-226186.1.peg.3994;
Cluster containing Alanyl-tRNA synthetase;
tRNA aminoacylation, Ala
fig|6666666.229941.peg.2430 CDS AP013045.1 2768049 2768519 3 + 471 Alanyl-tRNA synthetase (EC 6.1.1.7) CBSS-226186.1.peg.3994;
Cluster containing Alanyl-tRNA synthetase;
tRNA aminoacylation, Ala
fig|6666666.229941.peg.2431 CDS AP013045.1 2768823 2770163 3 + 1341 Alpha-L-fucosidase (EC 3.2.1.51) - none -
fig|6666666.229941.peg.2432 CDS AP013045.1 2770251 2771420 3 + 1170 Carbapenem antibiotics biosynthesis protein carD - none -
fig|6666666.229941.peg.2433 CDS AP013045.1 2771422 2772006 1 + 585 G:T/U mismatch-specific uracil/thymine DNA-glycosylase DNA repair, bacterial;
Uracil-DNA glycosylase
fig|6666666.229941.peg.2434 CDS AP013045.1 2772703 2772560 -1 - 144 hypothetical protein - none -
fig|6666666.229941.peg.2435 CDS AP013045.1 2772697 2772810 1 + 114 hypothetical protein - none -
fig|6666666.229941.peg.2436 CDS AP013045.1 2772839 2775847 2 + 3009 SusC, outer membrane protein involved in starch binding Cellulosome
fig|6666666.229941.peg.2437 CDS AP013045.1 2775871 2777430 1 + 1560 SusD, outer membrane protein Cellulosome
fig|6666666.229941.peg.2438 CDS AP013045.1 2777566 2778609 1 + 1044 hypothetical protein - none -
fig|6666666.229941.peg.2439 CDS AP013045.1 2778680 2780587 2 + 1908 Methylmalonyl-CoA mutase (EC 5.4.99.2) Propionyl-CoA to Succinyl-CoA Module
fig|6666666.229941.peg.2440 CDS AP013045.1 2780605 2782752 1 + 2148 Methylmalonyl-CoA mutase (EC 5.4.99.2) Propionyl-CoA to Succinyl-CoA Module
fig|6666666.229941.peg.2441 CDS AP013045.1 2782947 2784944 3 + 1998 ABC transporter ATP-binding protein - none -
fig|6666666.229941.peg.2442 CDS AP013045.1 2785184 2784969 -2 - 216 hypothetical protein - none -
fig|6666666.229941.peg.2443 CDS AP013045.1 2786080 2785322 -1 - 759 3-deoxy-manno-octulosonate cytidylyltransferase (EC 2.7.7.38) - none -
fig|6666666.229941.peg.2444 CDS AP013045.1 2788094 2786148 -2 - 1947 Inner membrane protein translocase component YidC, long form CTP synthase (EC 6.3.4.2) cluster;
Cell Division Subsystem including YidCD;
RNA modification cluster
fig|6666666.229941.peg.2445 CDS AP013045.1 2789741 2788137 -2 - 1605 CTP synthase (EC 6.3.4.2) CTP synthase (EC 6.3.4.2) cluster
fig|6666666.229941.peg.2446 CDS AP013045.1 2791778 2789973 -2 - 1806 MutS-related protein, family 1 DNA repair, bacterial MutL-MutS system
fig|6666666.229941.peg.2447 CDS AP013045.1 2791927 2791778 -1 - 150 hypothetical protein - none -
fig|6666666.229941.peg.2448 CDS AP013045.1 2792002 2793546 1 + 1545 hypothetical protein - none -
fig|6666666.229941.peg.2449 CDS AP013045.1 2793716 2794162 2 + 447 hypothetical protein - none -
fig|6666666.229941.peg.2450 CDS AP013045.1 2794162 2795067 1 + 906 Electron transport complex protein RnfB Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229941.peg.2451 CDS AP013045.1 2795077 2796405 1 + 1329 Electron transport complex protein RnfC Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229941.peg.2452 CDS AP013045.1 2796448 2797404 1 + 957 Electron transport complex protein RnfD Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229941.peg.2453 CDS AP013045.1 2797407 2798030 3 + 624 Electron transport complex protein RnfG Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229941.peg.2454 CDS AP013045.1 2798063 2798644 2 + 582 Electron transport complex protein RnfE Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229941.peg.2455 CDS AP013045.1 2798662 2799234 1 + 573 Electron transport complex protein RnfA Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.229941.peg.2456 CDS AP013045.1 2799756 2799262 -3 - 495 hypothetical protein - none -
fig|6666666.229941.peg.2457 CDS AP013045.1 2800291 2799992 -1 - 300 Protein trl - none -
fig|6666666.229941.peg.2458 CDS AP013045.1 2800814 2800942 2 + 129 hypothetical protein - none -
fig|6666666.229941.peg.2459 CDS AP013045.1 2800956 2801582 3 + 627 GlpG protein (membrane protein of glp regulon) - none -
fig|6666666.229941.peg.2460 CDS AP013045.1 2801563 2802447 1 + 885 GlpG protein (membrane protein of glp regulon) - none -
fig|6666666.229941.peg.2461 CDS AP013045.1 2802450 2803544 3 + 1095 AP endonuclease domain protein - none -
fig|6666666.229941.peg.2462 CDS AP013045.1 2804851 2803562 -1 - 1290 Xanthine/uracil/thiamine/ascorbate permease family protein Purine Utilization
fig|6666666.229941.peg.2463 CDS AP013045.1 2805570 2804878 -3 - 693 hypothetical protein - none -
fig|6666666.229941.peg.2464 CDS AP013045.1 2806272 2805574 -3 - 699 Beta-glucanase - none -
fig|6666666.229941.peg.2465 CDS AP013045.1 2806604 2806377 -2 - 228 hypothetical protein - none -
fig|6666666.229941.peg.2466 CDS AP013045.1 2808198 2806618 -3 - 1581 Mucin-desulfating sulfatase - none -
fig|6666666.229941.peg.2467 CDS AP013045.1 2808262 2808414 1 + 153 hypothetical protein - none -
fig|6666666.229941.peg.2468 CDS AP013045.1 2808468 2809043 3 + 576 ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17) - none -
fig|6666666.229941.peg.2469 CDS AP013045.1 2809078 2810496 1 + 1419 Cobalt-precorrin-3b C17-methyltransferase / Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) Cobalamin synthesis;
Cobalamin synthesis
fig|6666666.229941.peg.2470 CDS AP013045.1 2810511 2811692 3 + 1182 Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) - none -
fig|6666666.229941.peg.2471 CDS AP013045.1 2811689 2813509 2 + 1821 Cobalamin biosynthesis protein CbiG / Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) Cobalamin synthesis;
Cobalamin synthesis
fig|6666666.229941.peg.2472 CDS AP013045.1 2813506 2815314 1 + 1809 Cobalt-precorrin-6x reductase (EC 1.3.1.54) / Cobalt-precorrin-6 synthase, anaerobic Cobalamin synthesis;
Cobalamin synthesis
fig|6666666.229941.peg.2473 CDS AP013045.1 2815472 2817373 2 + 1902 Amidophosphoribosyltransferase (EC 2.4.2.14) De Novo Purine Biosynthesis
fig|6666666.229941.peg.2474 CDS AP013045.1 2817414 2817944 3 + 531 hypothetical protein - none -
fig|6666666.229941.peg.2475 CDS AP013045.1 2818163 2818032 -2 - 132 hypothetical protein - none -
fig|6666666.229941.peg.2476 CDS AP013045.1 2819230 2819370 1 + 141 hypothetical protein - none -
fig|6666666.229941.peg.2477 CDS AP013045.1 2819713 2819420 -1 - 294 FIG00936253: hypothetical protein - none -
fig|6666666.229941.peg.2478 CDS AP013045.1 2822884 2819717 -1 - 3168 Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA Cobalt-zinc-cadmium resistance;
Cobalt-zinc-cadmium resistance
fig|6666666.229941.peg.2479 CDS AP013045.1 2823991 2822951 -1 - 1041 Probable Co/Zn/Cd efflux system membrane fusion protein Cobalt-zinc-cadmium resistance
fig|6666666.229941.peg.2480 CDS AP013045.1 2825489 2824008 -2 - 1482 Outer membrane efflux protein precursor - none -
fig|6666666.229941.peg.2481 CDS AP013045.1 2825636 2826655 2 + 1020 Transcriptional regulator, AraC family - none -
fig|6666666.229941.peg.2482 CDS AP013045.1 2827295 2826849 -2 - 447 hypothetical protein - none -
fig|6666666.229941.peg.2483 CDS AP013045.1 2828911 2827352 -1 - 1560 Di-/tripeptide transporter Proton-dependent Peptide Transporters
fig|6666666.229941.peg.2484 CDS AP013045.1 2830096 2828966 -1 - 1131 FIG00936535: hypothetical protein - none -
fig|6666666.229941.peg.2485 CDS AP013045.1 2830139 2830456 2 + 318 hypothetical protein - none -
fig|6666666.229941.peg.2486 CDS AP013045.1 2831415 2830453 -3 - 963 Ornithine carbamoyltransferase (EC 2.1.3.3) Arginine Biosynthesis -- gjo;
Arginine Biosynthesis extended;
Arginine Deiminase Pathway;
Arginine and Ornithine Degradation
fig|6666666.229941.peg.2487 CDS AP013045.1 2831640 2832587 3 + 948 putative anti-sigma factor - none -
fig|6666666.229941.peg.2488 CDS AP013045.1 2832635 2835928 2 + 3294 SusC, outer membrane protein involved in starch binding Cellulosome
fig|6666666.229941.peg.2489 CDS AP013045.1 2835940 2837685 1 + 1746 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.229941.peg.2490 CDS AP013045.1 2837734 2839215 1 + 1482 O-Glycosyl hydrolase family 30 - none -
fig|6666666.229941.peg.2491 CDS AP013045.1 2839450 2839256 -1 - 195 Mobile element protein - none -
fig|6666666.229941.peg.2492 CDS AP013045.1 2839743 2840453 3 + 711 Hypothetical Nudix-like regulator - none -
fig|6666666.229941.peg.2493 CDS AP013045.1 2840507 2841994 2 + 1488 Xylulose kinase (EC 2.7.1.17) Xylose utilization
fig|6666666.229941.peg.2494 CDS AP013045.1 2842043 2843362 2 + 1320 Xylose isomerase (EC 5.3.1.5) Xylose utilization
fig|6666666.229941.peg.2495 CDS AP013045.1 2843388 2844887 3 + 1500 D-xylose proton-symporter XylE Xylose utilization
fig|6666666.229941.peg.2496 CDS AP013045.1 2845429 2845722 1 + 294 putative anti-sigma factor - none -
fig|6666666.229941.peg.2497 CDS AP013045.1 2845722 2845907 3 + 186 putative anti-sigma factor - none -
fig|6666666.229941.peg.2498 CDS AP013045.1 2845955 2849419 2 + 3465 TonB family protein / TonB-dependent receptor Ton and Tol transport systems
fig|6666666.229941.peg.2499 CDS AP013045.1 2849432 2851084 2 + 1653 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.229941.peg.2500 CDS AP013045.1 2851099 2852730 1 + 1632 hypothetical protein - none -
fig|6666666.229941.peg.2501 CDS AP013045.1 2852763 2854178 3 + 1416 conserved hypothetical protein, putative S-layer related protein precursor - none -
fig|6666666.229941.peg.2502 CDS AP013045.1 2854248 2855693 3 + 1446 hypothetical protein - none -
fig|6666666.229941.peg.2503 CDS AP013045.1 2855713 2855925 1 + 213 hypothetical protein - none -
fig|6666666.229941.peg.2504 CDS AP013045.1 2857152 2855956 -3 - 1197 Putative pyrogenic exotoxin B - none -
fig|6666666.229941.peg.2505 CDS AP013045.1 2857180 2858250 1 + 1071 Mobile element protein - none -
fig|6666666.229941.peg.2506 CDS AP013045.1 2858217 2858423 3 + 207 Mobile element protein - none -
fig|6666666.229941.peg.2507 CDS AP013045.1 2859082 2858612 -1 - 471 hypothetical protein - none -
fig|6666666.229941.peg.2508 CDS AP013045.1 2859497 2859712 2 + 216 hypothetical protein - none -
fig|6666666.229941.peg.2509 CDS AP013045.1 2859820 2860056 1 + 237 hypothetical protein - none -
fig|6666666.229941.peg.2510 CDS AP013045.1 2860195 2861235 1 + 1041 hypothetical protein - none -
fig|6666666.229941.peg.2511 CDS AP013045.1 2861620 2861369 -1 - 252 hypothetical protein - none -
fig|6666666.229941.peg.2512 CDS AP013045.1 2861776 2861934 1 + 159 hypothetical protein - none -
fig|6666666.229941.peg.2513 CDS AP013045.1 2862037 2862372 1 + 336 HicB protein - none -
fig|6666666.229941.peg.2514 CDS AP013045.1 2862412 2862531 1 + 120 hypothetical protein - none -
fig|6666666.229941.peg.2515 CDS AP013045.1 2862708 2863475 3 + 768 Acetylglutamate kinase (EC 2.7.2.8) Arginine Biosynthesis -- gjo;
Arginine Biosynthesis extended
fig|6666666.229941.peg.2516 CDS AP013045.1 2865312 2863495 -3 - 1818 putative Fe-S oxidoreductase - none -
fig|6666666.229941.peg.2517 CDS AP013045.1 2866112 2865309 -2 - 804 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148) A Gammaproteobacteria Cluster Relating to Translation;
Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.229941.peg.2518 CDS AP013045.1 2867430 2866117 -3 - 1314 ATP-dependent RNA helicase - none -
fig|6666666.229941.peg.2519 CDS AP013045.1 2868490 2867444 -1 - 1047 Transglycosylase - none -
fig|6666666.229941.peg.2520 CDS AP013045.1 2870596 2868494 -1 - 2103 FIG00936866: hypothetical protein - none -
fig|6666666.229941.peg.2521 CDS AP013045.1 2871207 2870665 -3 - 543 2-oxoglutarate oxidoreductase, gamma subunit (EC 1.2.7.3) - none -
fig|6666666.229941.peg.2522 CDS AP013045.1 2871989 2871228 -2 - 762 2-oxoglutarate oxidoreductase, beta subunit (EC 1.2.7.3) - none -
fig|6666666.229941.peg.2523 CDS AP013045.1 2872185 2872012 -3 - 174 hypothetical protein - none -
fig|6666666.229941.peg.2524 CDS AP013045.1 2873273 2872197 -2 - 1077 2-oxoglutarate oxidoreductase, alpha subunit (EC 1.2.7.3) - none -
fig|6666666.229941.peg.2525 CDS AP013045.1 2873508 2873278 -3 - 231 2-oxoglutarate oxidoreductase, delta subunit, putative (EC 1.2.7.3) - none -
fig|6666666.229941.peg.2526 CDS AP013045.1 2873714 2873568 -2 - 147 hypothetical protein - none -
fig|6666666.229941.peg.2527 CDS AP013045.1 2874584 2874030 -2 - 555 hypothetical protein - none -
fig|6666666.229941.peg.2528 CDS AP013045.1 2875702 2874770 -1 - 933 Integral membrane protein - none -
fig|6666666.229941.peg.2529 CDS AP013045.1 2876816 2875707 -2 - 1110 TPR repeat - none -
fig|6666666.229941.peg.2530 CDS AP013045.1 2878568 2876856 -2 - 1713 Glutaminyl-tRNA synthetase (EC 6.1.1.18) tRNA aminoacylation, Glu and Gln
fig|6666666.229941.peg.2531 CDS AP013045.1 2879824 2878787 -1 - 1038 Thiamine-monophosphate kinase (EC 2.7.4.16) 5-FCL-like protein;
Thiamin biosynthesis
fig|6666666.229941.peg.2532 CDS AP013045.1 2880939 2879839 -3 - 1101 Tetraacyldisaccharide 4@1-kinase (EC 2.7.1.130) - none -
fig|6666666.229941.peg.2533 CDS AP013045.1 2882718 2880958 -3 - 1761 Protease IV (EC 3.4.21.-) - none -
fig|6666666.229941.peg.2534 CDS AP013045.1 2882728 2882886 1 + 159 hypothetical protein - none -
fig|6666666.229941.peg.2535 CDS AP013045.1 2883002 2884345 2 + 1344 Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps Multidrug Resistance Efflux Pumps;
Riboflavin, FMN and FAD metabolism in plants
fig|6666666.229941.peg.2536 CDS AP013045.1 2884516 2884352 -1 - 165 hypothetical protein - none -
fig|6666666.229941.peg.2537 CDS AP013045.1 2884630 2884743 1 + 114 hypothetical protein - none -
fig|6666666.229941.peg.2538 CDS AP013045.1 2886960 2884759 -3 - 2202 Prolyl endopeptidase (EC 3.4.21.26) Serine endopeptidase (EC 3.4.21.-)
fig|6666666.229941.peg.2539 CDS AP013045.1 2890365 2887444 -3 - 2922 Adenylate cyclase (EC 4.6.1.1) cAMP signaling in bacteria
fig|6666666.229941.peg.2540 CDS AP013045.1 2890814 2891080 2 + 267 hypothetical protein - none -
fig|6666666.229941.peg.2541 CDS AP013045.1 2891257 2891535 1 + 279 hypothetical protein - none -
fig|6666666.229941.peg.2542 CDS AP013045.1 2891781 2893130 3 + 1350 hypothetical protein - none -
fig|6666666.229941.peg.2543 CDS AP013045.1 2893546 2895000 1 + 1455 probable phage protein YPO2116 - none -
fig|6666666.229941.peg.2544 CDS AP013045.1 2895293 2896468 2 + 1176 similar to (EMBL:AL117211) YPMT1.20C, Yersinia pestis CO-92 hypothetical protein from plasmid pMT1; similar to (EMBL:AF074611) Y1035, Yersinia pestis KIM5 hypothetical protein from plasmid pMT1; blastn and dotplot analyses suggest that an insertion event has taken place at this point as compared to Yersinia pestis pMT1 - none -
fig|6666666.229941.peg.2545 CDS AP013045.1 2896521 2900135 3 + 3615 Protein containing cell adhesion domain - none -
fig|6666666.229941.peg.2546 CDS AP013045.1 2900415 2900257 -3 - 159 hypothetical protein - none -
fig|6666666.229941.peg.2547 CDS AP013045.1 2901024 2902130 3 + 1107 similar to (EMBL:AL117211) YPMT1.20C, Yersinia pestis CO-92 hypothetical protein from plasmid pMT1; similar to (EMBL:AF074611) Y1035, Yersinia pestis KIM5 hypothetical protein from plasmid pMT1; blastn and dotplot analyses suggest that an insertion event has taken place at this point as compared to Yersinia pestis pMT1 - none -
fig|6666666.229941.peg.2548 CDS AP013045.1 2902184 2905492 2 + 3309 Protein containing cell adhesion domain - none -
fig|6666666.229941.peg.2549 CDS AP013045.1 2908691 2905839 -2 - 2853 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) Glycine and Serine Utilization;
Glycine cleavage system
fig|6666666.229941.peg.2550 CDS AP013045.1 2909347 2908709 -1 - 639 Similar to Hydroxyacylglutathione hydrolase, but in an organism lacking glutathione biosynthesis Glutathione: Non-redox reactions
fig|6666666.229941.peg.2551 CDS AP013045.1 2909964 2909344 -3 - 621 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB Cell Division Subsystem including YidCD;
RNA methylation;
RNA modification and chromosome partitioning cluster
fig|6666666.229941.peg.2552 CDS AP013045.1 2910816 2909968 -3 - 849 hypothetical protein - none -
fig|6666666.229941.peg.2553 CDS AP013045.1 2911119 2913686 3 + 2568 DNA gyrase subunit A (EC 5.99.1.3) Cell Division Subsystem including YidCD;
DNA gyrase subunits;
DNA replication cluster 1;
DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.229941.peg.2554 CDS AP013045.1 2913729 2914931 3 + 1203 TPR domain protein - none -
fig|6666666.229941.peg.2555 CDS AP013045.1 2916169 2915042 -1 - 1128 UspA - none -
fig|6666666.229941.peg.2556 CDS AP013045.1 2916435 2916172 -3 - 264 hypothetical protein - none -
fig|6666666.229941.peg.2557 CDS AP013045.1 2917279 2916572 -1 - 708 putative membrane-associated phospholipid phosphatase - none -
fig|6666666.229941.peg.2558 CDS AP013045.1 2918050 2917286 -1 - 765 BatE Aerotolerance operon in Bacteroides and potentially orthologous operons in other organisms
fig|6666666.229941.peg.2559 CDS AP013045.1 2919897 2918050 -3 - 1848 BatD Aerotolerance operon in Bacteroides and potentially orthologous operons in other organisms
fig|6666666.229941.peg.2560 CDS AP013045.1 2920637 2919891 -2 - 747 BatC Aerotolerance operon in Bacteroides and potentially orthologous operons in other organisms
fig|6666666.229941.peg.2561 CDS AP013045.1 2921667 2920648 -3 - 1020 BatB Aerotolerance operon in Bacteroides and potentially orthologous operons in other organisms
fig|6666666.229941.peg.2562 CDS AP013045.1 2922672 2921683 -3 - 990 BatA (Bacteroides aerotolerance operon) Aerotolerance operon in Bacteroides and potentially orthologous operons in other organisms
fig|6666666.229941.peg.2563 CDS AP013045.1 2923709 2922669 -2 - 1041 FIG00897205: hypothetical protein - none -
fig|6666666.229941.peg.2564 CDS AP013045.1 2924585 2923716 -2 - 870 hypothetical protein PA3071 Aerotolerance operon in Bacteroides and potentially orthologous operons in other organisms
fig|6666666.229941.peg.2565 CDS AP013045.1 2925610 2924615 -1 - 996 MoxR-like ATPase in aerotolerance operon Aerotolerance operon in Bacteroides and potentially orthologous operons in other organisms
fig|6666666.229941.peg.2566 CDS AP013045.1 2927155 2925764 -1 - 1392 putative integration host factor IHF alpha subunit - none -
fig|6666666.229941.peg.2567 CDS AP013045.1 2927444 2927148 -2 - 297 Integration host factor alpha/beta DNA structural proteins, bacterial
fig|6666666.229941.peg.2568 CDS AP013045.1 2928814 2927519 -1 - 1296 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase Methylthiotransferases;
Ribosomal protein S12p Asp methylthiotransferase
fig|6666666.229941.peg.2569 CDS AP013045.1 2929766 2928795 -2 - 972 Signal recognition particle receptor protein FtsY (=alpha subunit) (TC 3.A.5.1.1) Bacterial Cell Division;
Bacterial signal recognition particle (SRP);
Universal GTPases
fig|6666666.229941.peg.2570 CDS AP013045.1 2930154 2931275 3 + 1122 hypothetical protein - none -
fig|6666666.229941.peg.2571 CDS AP013045.1 2931486 2931364 -3 - 123 hypothetical protein - none -
fig|6666666.229941.peg.2572 CDS AP013045.1 2932338 2931805 -3 - 534 hypothetical protein - none -
fig|6666666.229941.peg.2573 CDS AP013045.1 2932491 2932622 3 + 132 hypothetical protein - none -
fig|6666666.229941.peg.2574 CDS AP013045.1 2932619 2933650 2 + 1032 FIG004453: protein YceG like CBSS-323097.3.peg.2594;
Cluster containing Alanyl-tRNA synthetase;
tRNA modification Bacteria
fig|6666666.229941.peg.2575 CDS AP013045.1 2933722 2935314 1 + 1593 Indolepyruvate oxidoreductase subunit IorA (EC 1.2.7.8) Aromatic amino acid interconversions with aryl acids;
Indole-pyruvate oxidoreductase complex
fig|6666666.229941.peg.2576 CDS AP013045.1 2935316 2935894 2 + 579 Indolepyruvate oxidoreductase subunit IorB (EC 1.2.7.8) Aromatic amino acid interconversions with aryl acids;
Indole-pyruvate oxidoreductase complex
fig|6666666.229941.peg.2577 CDS AP013045.1 2936390 2936073 -2 - 318 hypothetical protein - none -
fig|6666666.229941.peg.2578 CDS AP013045.1 2938365 2937340 -3 - 1026 DNA polymerase III delta subunit (EC 2.7.7.7) - none -
fig|6666666.229941.peg.2579 CDS AP013045.1 2939201 2938377 -2 - 825 AMP nucleosidase (EC 3.2.2.4) Purine conversions
fig|6666666.229941.peg.2580 CDS AP013045.1 2940450 2939713 -3 - 738 hypothetical protein - none -
fig|6666666.229941.peg.2581 CDS AP013045.1 2941450 2940566 -1 - 885 Xylanase Xylose utilization
fig|6666666.229941.peg.2582 CDS AP013045.1 2943104 2941530 -2 - 1575 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) Bacterial Cell Division;
CBSS-354.1.peg.2917;
RNA processing and degradation, bacterial
fig|6666666.229941.peg.2583 CDS AP013045.1 2943530 2943315 -2 - 216 DNA-binding protein HU DNA structural proteins, bacterial
fig|6666666.229941.peg.2584 CDS AP013045.1 2943831 2944907 3 + 1077 A/G-specific adenine glycosylase (EC 3.2.2.-) DNA repair, bacterial
fig|6666666.229941.peg.2585 CDS AP013045.1 2945000 2945449 2 + 450 Single-stranded DNA-binding protein DNA repair, bacterial;
DNA repair, bacterial RecFOR pathway
fig|6666666.229941.peg.2586 CDS AP013045.1 2945506 2946780 1 + 1275 Magnesium and cobalt efflux protein CorC CBSS-56780.10.peg.1536;
Copper homeostasis: copper tolerance;
Glycyl-tRNA synthetase containing cluster;
Magnesium transport;
tRNA-methylthiotransferase containing cluster
fig|6666666.229941.peg.2587 CDS AP013045.1 2946792 2947346 3 + 555 GldD - none -
fig|6666666.229941.peg.2588 CDS AP013045.1 2947349 2947972 2 + 624 Siderophore (Surfactin) biosynthesis regulatory protein - none -
fig|6666666.229941.peg.2589 CDS AP013045.1 2948538 2948365 -3 - 174 hypothetical protein - none -
fig|6666666.229941.peg.2590 CDS AP013045.1 2949992 2948685 -2 - 1308 similar to (EMBL:AL117211) YPMT1.20C, Yersinia pestis CO-92 hypothetical protein from plasmid pMT1; similar to (EMBL:AF074611) Y1035, Yersinia pestis KIM5 hypothetical protein from plasmid pMT1; blastn and dotplot analyses suggest that an insertion event has taken place at this point as compared to Yersinia pestis pMT1 - none -
fig|6666666.229941.peg.2591 CDS AP013045.1 2951606 2950620 -2 - 987 hypothetical protein - none -
fig|6666666.229941.peg.2592 CDS AP013045.1 2953158 2951626 -3 - 1533 putative outer membrane protein probably involved in nutrient binding - none -
fig|6666666.229941.peg.2593 CDS AP013045.1 2956650 2953186 -3 - 3465 TonB family protein / TonB-dependent receptor Ton and Tol transport systems
fig|6666666.229941.peg.2594 CDS AP013045.1 2957833 2956853 -1 - 981 putative anti-sigma factor - none -
fig|6666666.229941.peg.2595 CDS AP013045.1 2958454 2957885 -1 - 570 RNA polymerase ECF-type sigma factor - none -
fig|6666666.229941.peg.2596 CDS AP013045.1 2958743 2959684 2 + 942 L-threonine 3-dehydrogenase (EC 1.1.1.103) Glycine Biosynthesis;
Threonine degradation
fig|6666666.229941.peg.2597 CDS AP013045.1 2959703 2960284 2 + 582 putative membrane-associated phospholipid phosphatase - none -
fig|6666666.229941.peg.2598 CDS AP013045.1 2960302 2961159 1 + 858 PAP2 superfamily protein - none -
fig|6666666.229941.peg.2599 CDS AP013045.1 2961303 2961127 -3 - 177 hypothetical protein - none -
fig|6666666.229941.peg.2600 CDS AP013045.1 2961343 2961885 1 + 543 FIG00935504: hypothetical protein - none -
fig|6666666.229941.peg.2601 CDS AP013045.1 2961968 2962084 2 + 117 hypothetical protein - none -
fig|6666666.229941.peg.2602 CDS AP013045.1 2962098 2962463 3 + 366 hypothetical protein - none -
fig|6666666.229941.peg.2603 CDS AP013045.1 2962843 2962980 1 + 138 hypothetical protein - none -
fig|6666666.229941.peg.2604 CDS AP013045.1 2963035 2963172 1 + 138 hypothetical protein - none -
fig|6666666.229941.peg.2605 CDS AP013045.1 2964137 2963136 -2 - 1002 Possible oxidoreductase - none -
fig|6666666.229941.peg.2606 CDS AP013045.1 2965219 2964134 -1 - 1086 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) Glycine and Serine Utilization;
Glycine cleavage system
fig|6666666.229941.peg.2607 CDS AP013045.1 2966448 2965222 -3 - 1227 Tripeptide aminopeptidase (EC 3.4.11.4) - none -
fig|6666666.229941.peg.2609 CDS AP013045.1 2968419 2969153 3 + 735 hypothetical protein - none -
fig|6666666.229941.peg.2610 CDS AP013045.1 2969692 2969820 1 + 129 hypothetical protein - none -
fig|6666666.229941.peg.2611 CDS AP013045.1 2970458 2969847 -2 - 612 Lipoprotein signal peptidase (EC 3.4.23.36) Lipoprotein Biosynthesis;
Signal peptidase
fig|6666666.229941.peg.2612 CDS AP013045.1 2970852 2970472 -3 - 381 DnaK suppressor protein, putative - none -
fig|6666666.229941.peg.2613 CDS AP013045.1 2974372 2970920 -1 - 3453 Isoleucyl-tRNA synthetase (EC 6.1.1.5) tRNA aminoacylation, Ile
fig|6666666.229941.peg.2614 CDS AP013045.1 2974766 2975770 2 + 1005 Fic family protein - none -
fig|6666666.229941.peg.2615 CDS AP013045.1 2976317 2975781 -2 - 537 Lysine decarboxylase family - none -
fig|6666666.229941.peg.2616 CDS AP013045.1 2976428 2977000 2 + 573 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229941.peg.2617 CDS AP013045.1 2978749 2977097 -1 - 1653 hypothetical protein - none -
fig|6666666.229941.peg.2618 CDS AP013045.1 2980354 2979101 -1 - 1254 hypothetical protein - none -
fig|6666666.229941.peg.2619 CDS AP013045.1 2980436 2980558 2 + 123 hypothetical protein - none -
fig|6666666.229941.peg.2620 CDS AP013045.1 2980441 2981820 1 + 1380 UDP-glucose dehydrogenase (EC 1.1.1.22) - none -
fig|6666666.229941.peg.2621 CDS AP013045.1 2982942 2981863 -3 - 1080 Mannose-1-phosphate guanylyltransferase (GDP) (EC 2.7.7.22) Mannose Metabolism
fig|6666666.229941.peg.2622 CDS AP013045.1 2983333 2983028 -1 - 306 probable sialidase - none -
fig|6666666.229941.peg.2623 CDS AP013045.1 2983814 2983389 -2 - 426 probable sialidase - none -
fig|6666666.229941.peg.2624 CDS AP013045.1 2986088 2983893 -2 - 2196 Alpha-1,2-mannosidase Mannose Metabolism
fig|6666666.229941.peg.2625 CDS AP013045.1 2986977 2986234 -3 - 744 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) Chorismate Synthesis;
Cluster containing Alanyl-tRNA synthetase;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.229941.peg.2626 CDS AP013045.1 2987735 2986974 -2 - 762 Ubiquinone/menaquinone biosynthesis methyltransferase UbiE (EC 2.1.1.-) Menaquinone and Phylloquinone Biosynthesis
fig|6666666.229941.peg.2627 CDS AP013045.1 2988689 2987742 -2 - 948 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) De Novo Purine Biosynthesis
fig|6666666.229941.peg.2628 CDS AP013045.1 2989684 2988710 -1 - 975 Phosphate starvation-inducible protein PhoH, predicted ATPase CBSS-56780.10.peg.1536;
CBSS-56780.10.peg.1536;
Glycyl-tRNA synthetase containing cluster;
Phosphate metabolism;
Phosphate metabolism;
tRNA-methylthiotransferase containing cluster;
tRNA-methylthiotransferase containing cluster
fig|6666666.229941.peg.2629 CDS AP013045.1 2992354 2989841 -1 - 2514 putative type IIS restriction/modification enzyme - none -
fig|6666666.229941.peg.2630 CDS AP013045.1 2992497 2992378 -3 - 120 hypothetical protein - none -
fig|6666666.229941.peg.2631 CDS AP013045.1 2992593 2993972 3 + 1380 Xaa-Pro aminopeptidase (EC 3.4.11.9) Aminopeptidases (EC 3.4.11.-)
fig|6666666.229941.peg.2632 CDS AP013045.1 2994130 2993990 -1 - 141 hypothetical protein - none -
fig|6666666.229941.peg.2633 CDS AP013045.1 2994851 2994174 -2 - 678 hypothetical protein - none -
fig|6666666.229941.peg.2634 CDS AP013045.1 2995671 2994976 -3 - 696 hypothetical protein - none -
fig|6666666.229941.peg.2635 CDS AP013045.1 2997258 2995774 -3 - 1485 hypothetical protein - none -
fig|6666666.229941.peg.2636 CDS AP013045.1 2998247 2997336 -2 - 912 Hypothetical Exported Protein - none -
fig|6666666.229941.peg.2637 CDS AP013045.1 2999277 2998261 -3 - 1017 hypothetical protein - none -
fig|6666666.229941.peg.2638 CDS AP013045.1 2999677 2999318 -1 - 360 hypothetical protein - none -
fig|6666666.229941.peg.2639 CDS AP013045.1 3000580 2999843 -1 - 738 hypothetical protein - none -
fig|6666666.229941.peg.2640 CDS AP013045.1 3001105 3000683 -1 - 423 hypothetical protein - none -
fig|6666666.229941.peg.2641 CDS AP013045.1 3001984 3001151 -1 - 834 hypothetical protein - none -
fig|6666666.229941.peg.2642 CDS AP013045.1 3002255 3003715 2 + 1461 glycoside hydrolase family 30, candidate beta-glycosidase - none -
fig|6666666.229941.peg.2643 CDS AP013045.1 3003731 3006241 2 + 2511 Beta-galactosidase (EC 3.2.1.23) Galactosylceramide and Sulfatide metabolism;
Lactose and Galactose Uptake and Utilization;
Lactose utilization
fig|6666666.229941.peg.2644 CDS AP013045.1 3008364 3006226 -3 - 2139 FIG00898328: hypothetical protein - none -
fig|6666666.229941.peg.2645 CDS AP013045.1 3008453 3010240 2 + 1788 Translation elongation factor LepA Heat shock dnaK gene cluster extended;
Translation elongation factors bacterial;
Universal GTPases
fig|6666666.229941.peg.2646 CDS AP013045.1 3010797 3010576 -3 - 222 hypothetical protein - none -
fig|6666666.229941.peg.2647 CDS AP013045.1 3011140 3014265 1 + 3126 TonB family protein / TonB-dependent receptor Ton and Tol transport systems
fig|6666666.229941.peg.2648 CDS AP013045.1 3014384 3014268 -2 - 117 hypothetical protein - none -
fig|6666666.229941.peg.2649 CDS AP013045.1 3014434 3015738 1 + 1305 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.229941.peg.2650 CDS AP013045.1 3017228 3015822 -2 - 1407 FIG00896539: hypothetical protein - none -
fig|6666666.229941.peg.2651 CDS AP013045.1 3018639 3017221 -3 - 1419 RNA methyltransferase, TrmA family - none -
fig|6666666.229941.peg.2652 CDS AP013045.1 3018813 3021533 3 + 2721 Pyruvate,phosphate dikinase (EC 2.7.9.1) Glycolysis and Gluconeogenesis;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.229941.peg.2653 CDS AP013045.1 3021738 3022091 3 + 354 FIG00898324: hypothetical protein - none -
fig|6666666.229941.peg.2654 CDS AP013045.1 3022088 3022747 2 + 660 FIG00897447: hypothetical protein - none -
fig|6666666.229941.peg.2655 CDS AP013045.1 3022879 3023100 1 + 222 hypothetical protein - none -
fig|6666666.229941.peg.2656 CDS AP013045.1 3023370 3023603 3 + 234 FHA domain protein - none -
fig|6666666.229941.peg.2657 CDS AP013045.1 3023623 3024390 1 + 768 Protein serine/threonine phosphatase PrpC, regulation of stationary phase Conserved gene cluster associated with Met-tRNA formyltransferase
fig|6666666.229941.peg.2658 CDS AP013045.1 3024471 3026348 3 + 1878 FIG00896902: hypothetical protein - none -
fig|6666666.229941.peg.2659 CDS AP013045.1 3026367 3027305 3 + 939 hypothetical protein - none -
fig|6666666.229941.peg.2660 CDS AP013045.1 3027321 3029474 3 + 2154 hypothetical protein - none -
fig|6666666.229941.peg.2661 CDS AP013045.1 3029978 3032962 2 + 2985 putative outer membrane protein probably involved in nutrient binding - none -
fig|6666666.229941.peg.2662 CDS AP013045.1 3032976 3034859 3 + 1884 Putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.229941.peg.2663 CDS AP013045.1 3035896 3035072 -1 - 825 Acetyltransferase (EC 2.3.1.-) - none -
fig|6666666.229941.peg.2664 CDS AP013045.1 3036831 3035920 -3 - 912 FIG00406100: hypothetical protein - none -
fig|6666666.229941.peg.2665 CDS AP013045.1 3038129 3036939 -2 - 1191 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29) Glycine Biosynthesis;
Glycine and Serine Utilization
fig|6666666.229941.peg.2666 CDS AP013045.1 3038497 3039018 1 + 522 RNA polymerase ECF-type sigma factor - none -
fig|6666666.229941.peg.2667 CDS AP013045.1 3039039 3040352 3 + 1314 RNA polymerase ECF-type sigma factor - none -
fig|6666666.229941.peg.2668 CDS AP013045.1 3040464 3041210 3 + 747 hypothetical protein - none -
fig|6666666.229941.peg.2669 CDS AP013045.1 3041480 3042046 2 + 567 FIG00897895: hypothetical protein - none -
fig|6666666.229941.peg.2670 CDS AP013045.1 3042059 3042523 2 + 465 tmRNA-binding protein SmpB Heat shock dnaK gene cluster extended;
Translation termination factors bacterial
fig|6666666.229941.peg.2671 CDS AP013045.1 3042527 3043486 2 + 960 FIG00897015: hypothetical protein - none -
fig|6666666.229941.peg.2672 CDS AP013045.1 3043491 3043898 3 + 408 Phage protein - none -
fig|6666666.229941.peg.2673 CDS AP013045.1 3044012 3045331 2 + 1320 hypothetical protein - none -
fig|6666666.229941.peg.2674 CDS AP013045.1 3045441 3046190 3 + 750 Inorganic pyrophosphatase (EC 3.6.1.1) Phosphate metabolism
fig|6666666.229941.peg.2675 CDS AP013045.1 3046416 3047006 3 + 591 hypothetical protein - none -
fig|6666666.229941.peg.2676 CDS AP013045.1 3047130 3048293 3 + 1164 sensor histidine kinase - none -
fig|6666666.229941.peg.2677 CDS AP013045.1 3048433 3048308 -1 - 126 hypothetical protein - none -
fig|6666666.229941.peg.2678 CDS AP013045.1 3048432 3049037 3 + 606 RNA polymerase ECF-type sigma factor - none -
fig|6666666.229941.peg.2679 CDS AP013045.1 3049378 3049223 -1 - 156 Mobile element protein - none -
fig|6666666.229941.peg.2680 CDS AP013045.1 3050244 3050969 3 + 726 hypothetical protein - none -
fig|6666666.229941.peg.2681 CDS AP013045.1 3051054 3051827 3 + 774 tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33) RNA methylation;
tRNA modification Bacteria
fig|6666666.229941.peg.2682 CDS AP013045.1 3051824 3052930 2 + 1107 Septum site-determining protein MinD Bacterial Cell Division;
Bacterial Cytoskeleton;
Bacterial cell division cluster;
Septum site-determining cluster Min
fig|6666666.229941.peg.2683 CDS AP013045.1 3053551 3053868 1 + 318 hypothetical protein - none -
fig|6666666.229941.peg.2684 CDS AP013045.1 3055661 3053958 -2 - 1704 Putative carboxy-terminal processing protease (EC 3.4.21.102) - none -
fig|6666666.229941.peg.2685 CDS AP013045.1 3056697 3055720 -3 - 978 Ribokinase (EC 2.7.1.15) D-ribose utilization;
Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.229941.peg.2686 CDS AP013045.1 3057018 3060023 3 + 3006 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins Ton and Tol transport systems
fig|6666666.229941.peg.2687 CDS AP013045.1 3060045 3061406 3 + 1362 FIG00937637: hypothetical protein - none -
fig|6666666.229941.peg.2688 CDS AP013045.1 3061464 3063056 3 + 1593 hypothetical protein - none -
fig|6666666.229941.peg.2689 CDS AP013045.1 3064441 3064067 -1 - 375 hypothetical protein - none -
fig|6666666.229941.peg.2690 CDS AP013045.1 3066120 3064600 -3 - 1521 Integral membrane protein - none -
fig|6666666.229941.peg.2691 CDS AP013045.1 3066253 3066107 -1 - 147 hypothetical protein - none -
fig|6666666.229941.peg.2692 CDS AP013045.1 3066915 3066259 -3 - 657 hypothetical protein - none -
fig|6666666.229941.peg.2693 CDS AP013045.1 3067448 3067080 -2 - 369 putative protein-export membrane protein - none -
fig|6666666.229941.peg.2694 CDS AP013045.1 3068185 3067448 -1 - 738 hypothetical protein - none -
fig|6666666.229941.peg.2695 CDS AP013045.1 3068716 3068216 -1 - 501 hypothetical protein - none -
fig|6666666.229941.peg.2696 CDS AP013045.1 3069920 3068739 -2 - 1182 Transcriptional regulator - none -
fig|6666666.229941.peg.2697 CDS AP013045.1 3070861 3070034 -1 - 828 Putative hemolysin - none -
fig|6666666.229941.peg.2698 CDS AP013045.1 3071769 3070858 -3 - 912 FIG00898098: hypothetical protein - none -
fig|6666666.229941.peg.2699 CDS AP013045.1 3072501 3071773 -3 - 729 oxidoreductase, short chain dehydrogenase/reductase family - none -
fig|6666666.229941.peg.2700 CDS AP013045.1 3073025 3072504 -2 - 522 Glycerol-3-phosphate cytidylyltransferase (EC 2.7.7.39) Rhamnose containing glycans
fig|6666666.229941.peg.2701 CDS AP013045.1 3074507 3073395 -2 - 1113 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262) ECSIG4-SIG7;
Pyridoxin (Vitamin B6) Biosynthesis
fig|6666666.229941.peg.2702 CDS AP013045.1 3075534 3074488 -3 - 1047 FIG00898562: hypothetical protein - none -
fig|6666666.229941.peg.2703 CDS AP013045.1 3076657 3075638 -1 - 1020 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) Conserved gene cluster associated with Met-tRNA formyltransferase;
RNA methylation
fig|6666666.229941.peg.2704 CDS AP013045.1 3078990 3076816 -3 - 2175 Peptidyl-prolyl cis-trans isomerase - none -
fig|6666666.229941.peg.2705 CDS AP013045.1 3079717 3079091 -1 - 627 hypothetical protein - none -
fig|6666666.229941.peg.2706 CDS AP013045.1 3081094 3079727 -1 - 1368 TPR domain protein - none -
fig|6666666.229941.peg.2707 CDS AP013045.1 3082468 3081143 -1 - 1326 putative outer membrane protein - none -
fig|6666666.229941.peg.2708 CDS AP013045.1 3082762 3084018 1 + 1257 hypothetical protein - none -
fig|6666666.229941.peg.2709 CDS AP013045.1 3084015 3085598 3 + 1584 Alkaline phosphatase (EC 3.1.3.1); Type I phosphodiesterase/nucleotide pyrophosphatase precursor Phosphate metabolism
fig|6666666.229941.peg.2710 CDS AP013045.1 3085672 3089010 1 + 3339 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) - none -
fig|6666666.229941.peg.2711 CDS AP013045.1 3089096 3093154 2 + 4059 Two-component system sensor histidine kinase/response regulator, hybrid - none -
fig|6666666.229941.peg.2712 CDS AP013045.1 3095278 3093191 -1 - 2088 TPR repeat precursor - none -
fig|6666666.229941.peg.2713 CDS AP013045.1 3095843 3095283 -2 - 561 Peptide deformylase (EC 3.5.1.88) Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Translation termination factors bacterial
fig|6666666.229941.peg.2714 CDS AP013045.1 3096274 3095852 -1 - 423 Putative Holliday junction resolvase YqgF - none -
fig|6666666.229941.peg.2715 CDS AP013045.1 3097675 3096278 -1 - 1398 Glycosyltransferase - none -
fig|6666666.229941.peg.2716 CDS AP013045.1 3098739 3098140 -3 - 600 Mobile element protein - none -
fig|6666666.229941.peg.2717 CDS AP013045.1 3099341 3098817 -2 - 525 Mobile element protein - none -
fig|6666666.229941.peg.2718 CDS AP013045.1 3099497 3100825 2 + 1329 Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1) Bacterial signal recognition particle (SRP);
Universal GTPases
fig|6666666.229941.peg.2719 CDS AP013045.1 3100838 3101746 2 + 909 Methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5) / Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9) 5-FCL-like protein;
One-carbon metabolism by tetrahydropterines;
One-carbon metabolism by tetrahydropterines
fig|6666666.229941.peg.2720 CDS AP013045.1 3103135 3101885 -1 - 1251 ABC transporter, permease protein - none -
fig|6666666.229941.peg.2721 CDS AP013045.1 3104367 3103192 -3 - 1176 Aspartate aminotransferase (EC 2.6.1.1) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229941.peg.2722 CDS AP013045.1 3104516 3104388 -2 - 129 hypothetical protein - none -
fig|6666666.229941.peg.2723 CDS AP013045.1 3104715 3106073 3 + 1359 Dihydrolipoamide dehydrogenase (EC 1.8.1.4) 5-FCL-like protein;
Glycine cleavage system
fig|6666666.229941.peg.2724 CDS AP013045.1 3106076 3107389 2 + 1314 Aspartate aminotransferase (EC 2.6.1.1) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229941.peg.2725 CDS AP013045.1 3107505 3108098 3 + 594 Transcriptional regulator, ArsR family - none -
fig|6666666.229941.peg.2726 CDS AP013045.1 3109659 3108379 -3 - 1281 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) - none -
fig|6666666.229941.peg.2727 CDS AP013045.1 3111001 3109718 -1 - 1284 membrane protein, putative - none -
fig|6666666.229941.peg.2728 CDS AP013045.1 3111921 3110998 -3 - 924 ABC transporter, ATP-binding protein - none -
fig|6666666.229941.peg.2729 CDS AP013045.1 3114023 3111927 -2 - 2097 DNA primase (EC 2.7.7.-) CBSS-349161.4.peg.2417;
Macromolecular synthesis operon
fig|6666666.229941.peg.2730 CDS AP013045.1 3114835 3114212 -1 - 624 Mobile element protein - none -
fig|6666666.229941.peg.2731 CDS AP013045.1 3115340 3114903 -2 - 438 Mobile element protein - none -
fig|6666666.229941.peg.2732 CDS AP013045.1 3117176 3117292 2 + 117 hypothetical protein - none -
fig|6666666.229941.peg.2733 CDS AP013045.1 3117883 3117578 -1 - 306 CRISPR-associated protein Cas2 CRISPRs
fig|6666666.229941.peg.2734 CDS AP013045.1 3118882 3117926 -1 - 957 CRISPR-associated protein Cas1 CRISPRs
fig|6666666.229941.peg.2735 CDS AP013045.1 3122924 3118872 -2 - 4053 CRISPR-associated protein, Csn1 family CRISPRs
fig|6666666.229941.peg.2736 CDS AP013045.1 3124902 3124576 -3 - 327 hypothetical protein - none -
fig|6666666.229941.peg.2737 CDS AP013045.1 3125204 3124902 -2 - 303 Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage Bacterial Cell Division;
Bacterial Cytoskeleton;
Cell division-ribosomal stress proteins cluster;
Stationary phase repair cluster
fig|6666666.229941.peg.2738 CDS AP013045.1 3125221 3126483 1 + 1263 DNA polymerase III subunits gamma and tau (EC 2.7.7.7) DNA processing cluster
fig|6666666.229941.peg.2739 CDS AP013045.1 3126649 3126464 -1 - 186 hypothetical protein - none -
fig|6666666.229941.peg.2740 CDS AP013045.1 3126666 3127085 3 + 420 DNA polymerase III subunits gamma and tau (EC 2.7.7.7) DNA processing cluster
fig|6666666.229941.peg.2741 CDS AP013045.1 3129638 3127146 -2 - 2493 ATP-dependent protease La (EC 3.4.21.53) Type I Proteolysis in bacteria, ATP-dependent
fig|6666666.229941.peg.2742 CDS AP013045.1 3131997 3129817 -3 - 2181 Protease II (EC 3.4.21.83) - none -
fig|6666666.229941.peg.2743 CDS AP013045.1 3132876 3132031 -3 - 846 hypothetical protein - none -
fig|6666666.229941.peg.2744 CDS AP013045.1 3135008 3132918 -2 - 2091 Prolyl oligopeptidase family protein - none -
fig|6666666.229941.peg.2745 CDS AP013045.1 3135199 3135894 1 + 696 Septum formation protein Maf Bacterial Cell Division;
Bacterial Cytoskeleton;
Bacterial cell division cluster;
CBSS-354.1.peg.2917
fig|6666666.229941.peg.2746 CDS AP013045.1 3136953 3135886 -3 - 1068 GDP-L-fucose synthetase (EC 1.1.1.271) - none -
fig|6666666.229941.peg.2747 CDS AP013045.1 3137152 3137018 -1 - 135 hypothetical protein - none -
fig|6666666.229941.peg.2748 CDS AP013045.1 3138505 3137426 -1 - 1080 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) - none -
fig|6666666.229941.peg.2749 CDS AP013045.1 3138827 3139474 2 + 648 LSU ribosomal protein L25p Ribosome LSU bacterial
fig|6666666.229941.peg.2750 CDS AP013045.1 3139568 3140131 2 + 564 Peptidyl-tRNA hydrolase (EC 3.1.1.29) Cell division-ribosomal stress proteins cluster;
Sporulation-associated proteins with broader functions;
Translation termination factors bacterial
fig|6666666.229941.peg.2751 CDS AP013045.1 3140128 3140547 1 + 420 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) Cell division-ribosomal stress proteins cluster;
DNA replication cluster 1;
Heat shock dnaK gene cluster extended
fig|6666666.229941.peg.2752 CDS AP013045.1 3143258 3140667 -2 - 2592 FIG00937290: hypothetical protein - none -
fig|6666666.229941.peg.2753 CDS AP013045.1 3143382 3143936 3 + 555 Chromate transport protein - none -
fig|6666666.229941.peg.2754 CDS AP013045.1 3143933 3144466 2 + 534 Chromate transport protein - none -
fig|6666666.229941.peg.2755 CDS AP013045.1 3144509 3145552 2 + 1044 FIG146085: 3@1-to-5@1 oligoribonuclease A, Bacillus type CBSS-138119.3.peg.2719;
RNA processing and degradation, bacterial
fig|6666666.229941.peg.2756 CDS AP013045.1 3146093 3145557 -2 - 537 hypothetical protein - none -
fig|6666666.229941.peg.2757 CDS AP013045.1 3146434 3146189 -1 - 246 hypothetical protein - none -
fig|6666666.229941.peg.2758 CDS AP013045.1 3146598 3148001 3 + 1404 hypothetical protein - none -
fig|6666666.229941.peg.2759 CDS AP013045.1 3148013 3148135 2 + 123 hypothetical protein - none -
fig|6666666.229941.peg.2760 CDS AP013045.1 3148122 3148514 3 + 393 Signal peptidase I (EC 3.4.21.89) Signal peptidase
fig|6666666.229941.peg.2761 CDS AP013045.1 3148632 3150479 3 + 1848 ABC transporter, ATP-binding protein - none -
fig|6666666.229941.peg.2762 CDS AP013045.1 3150552 3153104 3 + 2553 putative large secreted protein - none -
fig|6666666.229941.peg.2763 CDS AP013045.1 3153171 3154592 3 + 1422 Type I secretion system, outer membrane component LapE - none -
fig|6666666.229941.peg.2764 CDS AP013045.1 3154644 3155636 3 + 993 HlyD family secretion protein - none -
fig|6666666.229941.peg.2765 CDS AP013045.1 3155647 3156825 1 + 1179 ABC-type multidrug transport system, permease component - none -
fig|6666666.229941.peg.2766 CDS AP013045.1 3156837 3158078 3 + 1242 ABC-type multidrug transport system, permease component - none -
fig|6666666.229941.peg.2767 CDS AP013045.1 3158080 3158958 1 + 879 1,4-dihydroxy-2-naphthoate polyprenyltransferase (EC 2.5.1.74) Menaquinone and Phylloquinone Biosynthesis;
Menaquinone and Phylloquinone Biosynthesis -- gjo
fig|6666666.229941.peg.2768 CDS AP013045.1 3159266 3162307 2 + 3042 TonB family protein / TonB-dependent receptor Ton and Tol transport systems
fig|6666666.229941.peg.2769 CDS AP013045.1 3162328 3163779 1 + 1452 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.229941.peg.2770 CDS AP013045.1 3166343 3163923 -2 - 2421 Alpha-N-arabinofuranosidase (EC 3.2.1.55) - none -
fig|6666666.229941.peg.2771 CDS AP013045.1 3166629 3166486 -3 - 144 hypothetical protein - none -
fig|6666666.229941.peg.2772 CDS AP013045.1 3166698 3167909 3 + 1212 Serine protease inhibitor (serpin family) - none -
fig|6666666.229941.peg.2773 CDS AP013045.1 3168494 3167955 -2 - 540 DJ-1/YajL/PfpI superfamily, includes chaperone protein YajL (former ThiJ), parkinsonism-associated protein DJ-1, peptidases PfpI, Hsp31 - none -
fig|6666666.229941.peg.2774 CDS AP013045.1 3169367 3168531 -2 - 837 Ferric siderophore transport system, periplasmic binding protein TonB Hemin transport system;
Ton and Tol transport systems
fig|6666666.229941.peg.2775 CDS AP013045.1 3169783 3169364 -1 - 420 Biopolymer transport protein ExbD/TolR Ton and Tol transport systems
fig|6666666.229941.peg.2776 CDS AP013045.1 3170502 3169789 -3 - 714 MotA/TolQ/ExbB proton channel family protein Ton and Tol transport systems
fig|6666666.229941.peg.2777 CDS AP013045.1 3171262 3170543 -1 - 720 Pyridoxine 5@1-phosphate synthase (EC 2.6.99.2) Pyridoxin (Vitamin B6) Biosynthesis
fig|6666666.229941.peg.2778 CDS AP013045.1 3171357 3172250 3 + 894 NAD kinase (EC 2.7.1.23) NAD and NADP cofactor biosynthesis global
fig|6666666.229941.peg.2779 CDS AP013045.1 3172542 3175574 3 + 3033 Protein-export membrane protein SecD (TC 3.A.5.1.1) / Protein-export membrane protein SecF (TC 3.A.5.1.1) CBSS-211586.1.peg.2832;
CBSS-211586.1.peg.2832
fig|6666666.229941.peg.2780 CDS AP013045.1 3175691 3175828 2 + 138 hypothetical protein - none -
fig|6666666.229941.peg.2781 CDS AP013045.1 3176110 3176343 1 + 234 hypothetical protein - none -
fig|6666666.229941.peg.2782 CDS AP013045.1 3176626 3176754 1 + 129 hypothetical protein - none -
fig|6666666.229941.peg.2783 CDS AP013045.1 3176881 3177060 1 + 180 hypothetical protein - none -
fig|6666666.229941.peg.2784 CDS AP013045.1 3180681 3177139 -3 - 3543 Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-) Methionine Degradation;
Pyruvate:ferredoxin oxidoreductase
fig|6666666.229941.peg.2785 CDS AP013045.1 3181899 3180721 -3 - 1179 ATPase component BioM of energizing module of biotin ECF transporter - none -
fig|6666666.229941.peg.2786 CDS AP013045.1 3182568 3182065 -3 - 504 hypothetical protein - none -
fig|6666666.229941.peg.2787 CDS AP013045.1 3183671 3182652 -2 - 1020 Branched-chain amino acid aminotransferase (EC 2.6.1.42) Alanine biosynthesis;
Branched-Chain Amino Acid Biosynthesis;
Leucine Biosynthesis
fig|6666666.229941.peg.2788 CDS AP013045.1 3185444 3183981 -2 - 1464 Inner membrane protein YqiK - none -
fig|6666666.229941.peg.2789 CDS AP013045.1 3185834 3185487 -2 - 348 Lactoylglutathione lyase or related lyase - none -
fig|6666666.229941.peg.2790 CDS AP013045.1 3186449 3185868 -2 - 582 hypothetical protein - none -
fig|6666666.229941.peg.2791 CDS AP013045.1 3189105 3186541 -3 - 2565 FIG00407069: hypothetical protein - none -
fig|6666666.229941.peg.2792 CDS AP013045.1 3189266 3190930 2 + 1665 putative membrane protein - none -
fig|6666666.229941.peg.2793 CDS AP013045.1 3190990 3191685 1 + 696 putative bacterial transferase hexapeptide repeat:ADP-glucose pyrophosphorylase - none -
fig|6666666.229941.peg.2794 CDS AP013045.1 3191725 3192582 1 + 858 FIG00939405: hypothetical protein - none -
fig|6666666.229941.peg.2795 CDS AP013045.1 3192582 3193502 3 + 921 FIG00896876: hypothetical protein - none -
fig|6666666.229941.peg.2796 CDS AP013045.1 3193499 3194230 2 + 732 Hydrolase (HAD superfamily) - none -
fig|6666666.229941.peg.2797 CDS AP013045.1 3194458 3194222 -1 - 237 hypothetical protein - none -
fig|6666666.229941.peg.2798 CDS AP013045.1 3194498 3194710 2 + 213 hypothetical protein - none -
fig|6666666.229941.peg.2799 CDS AP013045.1 3194786 3196024 2 + 1239 Cation efflux system protein - none -
fig|6666666.229941.peg.2800 CDS AP013045.1 3196038 3199121 3 + 3084 Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA Cobalt-zinc-cadmium resistance;
Cobalt-zinc-cadmium resistance
fig|6666666.229941.peg.2801 CDS AP013045.1 3199118 3200299 2 + 1182 Heavy metal RND efflux outer membrane protein, CzcC family Cobalt-zinc-cadmium resistance
fig|6666666.229941.peg.2802 CDS AP013045.1 3201323 3200463 -2 - 861 FIG00897598: hypothetical protein - none -
fig|6666666.229941.peg.2803 CDS AP013045.1 3202666 3201353 -1 - 1314 Probable secreted glycosyl hydrolase - none -
fig|6666666.229941.peg.2804 CDS AP013045.1 3202789 3204018 1 + 1230 Mobile element protein - none -
fig|6666666.229941.peg.2805 CDS AP013045.1 3204049 3204531 1 + 483 hypothetical protein - none -
fig|6666666.229941.peg.2806 CDS AP013045.1 3204547 3205170 1 + 624 hypothetical protein - none -
fig|6666666.229941.peg.2807 CDS AP013045.1 3205201 3205902 1 + 702 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) Heat shock dnaK gene cluster extended;
RNA methylation
fig|6666666.229941.peg.2808 CDS AP013045.1 3206516 3207769 2 + 1254 Ribonuclease BN (EC 3.1.-.-) - none -
fig|6666666.229941.peg.2809 CDS AP013045.1 3207790 3207927 1 + 138 hypothetical protein - none -
fig|6666666.229941.peg.2810 CDS AP013045.1 3208007 3210445 2 + 2439 Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch;
Threonine and Homoserine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.229941.peg.2811 CDS AP013045.1 3210452 3211657 2 + 1206 Predicted functional analog of homoserine kinase (EC 2.7.1.-) Threonine and Homoserine Biosynthesis
fig|6666666.229941.peg.2812 CDS AP013045.1 3212571 3211675 -3 - 897 putative sodium-dependent transporter - none -
fig|6666666.229941.peg.2813 CDS AP013045.1 3214603 3212615 -1 - 1989 Glucosamine-6-phosphate deaminase (EC 3.5.99.6) Chitin and N-acetylglucosamine utilization
fig|6666666.229941.peg.2814 CDS AP013045.1 3214725 3214612 -3 - 114 hypothetical protein - none -
fig|6666666.229941.peg.2815 CDS AP013045.1 3217228 3214766 -1 - 2463 Helicase PriA essential for oriC/DnaA-independent DNA replication Conserved gene cluster associated with Met-tRNA formyltransferase
fig|6666666.229941.peg.2816 CDS AP013045.1 3217857 3217255 -3 - 603 hypothetical protein - none -
fig|6666666.229941.peg.2817 CDS AP013045.1 3218855 3218550 -2 - 306 hypothetical protein - none -
fig|6666666.229941.peg.2818 CDS AP013045.1 3218907 3219320 3 + 414 hypothetical protein - none -
fig|6666666.229941.peg.2819 CDS AP013045.1 3219295 3219408 1 + 114 hypothetical protein - none -
fig|6666666.229941.peg.2820 CDS AP013045.1 3219442 3219918 1 + 477 COG2110, Macro domain, possibly ADP-ribose binding module - none -
fig|6666666.229941.peg.2821 CDS AP013045.1 3219909 3220232 3 + 324 NAD-dependent protein deacetylase of SIR2 family Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate;
Redox-dependent regulation of nucleus processes
fig|6666666.229941.peg.2822 CDS AP013045.1 3221160 3221378 3 + 219 FIG039061: hypothetical protein related to heme utilization - none -
fig|6666666.229941.peg.2823 CDS AP013045.1 3221385 3222395 3 + 1011 Aminopeptidase - none -
fig|6666666.229941.peg.2824 CDS AP013045.1 3222648 3223199 3 + 552 hypothetical protein - none -
fig|6666666.229941.peg.2825 CDS AP013045.1 3223228 3223914 1 + 687 putative NADH dehydrogenase/NAD(P)H nitroreductase - none -
fig|6666666.229941.peg.2826 CDS AP013045.1 3225648 3223993 -3 - 1656 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) - none -
fig|6666666.229941.peg.2827 CDS AP013045.1 3225971 3226093 2 + 123 Mobile element protein - none -
fig|6666666.229941.peg.2828 CDS AP013045.1 3226965 3226144 -3 - 822 Mobile element protein - none -
fig|6666666.229941.peg.2829 CDS AP013045.1 3227161 3226979 -1 - 183 hypothetical protein - none -
fig|6666666.229941.peg.2830 CDS AP013045.1 3227574 3227380 -3 - 195 hypothetical protein - none -
fig|6666666.229941.peg.2831 CDS AP013045.1 3227938 3228057 1 + 120 hypothetical protein - none -
fig|6666666.229941.peg.2832 CDS AP013045.1 3229236 3232841 3 + 3606 putative DNA methylase - none -
fig|6666666.229941.peg.2833 CDS AP013045.1 3232996 3233616 1 + 621 Transcriptional regulator, TetR family - none -
fig|6666666.229941.peg.2834 CDS AP013045.1 3233664 3234467 3 + 804 Dialkylrecorsinol condensing enzyme - none -
fig|6666666.229941.peg.2835 CDS AP013045.1 3234460 3235590 1 + 1131 Biotin synthesis protein BioZ Biotin biosynthesis Experimental
fig|6666666.229941.peg.2836 CDS AP013045.1 3235614 3237866 3 + 2253 membrane protein, putative - none -
fig|6666666.229941.peg.2837 CDS AP013045.1 3237863 3238597 2 + 735 Outer membrane lipoprotein-sorting protein - none -
fig|6666666.229941.peg.2838 CDS AP013045.1 3238609 3240015 1 + 1407 FIG00936125: hypothetical protein - none -
fig|6666666.229941.peg.2839 CDS AP013045.1 3240070 3242499 1 + 2430 hypothetical protein - none -
fig|6666666.229941.peg.2840 CDS AP013045.1 3242510 3243058 2 + 549 hypothetical protein - none -
fig|6666666.229941.peg.2841 CDS AP013045.1 3243141 3243788 3 + 648 HAD-superfamily hydrolase, subfamily IA, variant 1 family protein - none -
fig|6666666.229941.peg.2842 CDS AP013045.1 3245244 3243781 -3 - 1464 ATP-dependent DNA helicase - none -
fig|6666666.229941.peg.2843 CDS AP013045.1 3245554 3245432 -1 - 123 hypothetical protein - none -
fig|6666666.229941.peg.2844 CDS AP013045.1 3245697 3247022 3 + 1326 ATPase component BioM of energizing module of biotin ECF transporter - none -
fig|6666666.229941.peg.2845 CDS AP013045.1 3247270 3247079 -1 - 192 hypothetical protein - none -
fig|6666666.229941.peg.2846 CDS AP013045.1 3248664 3247267 -3 - 1398 Toprim domain protein CBSS-315749.4.peg.3658
fig|6666666.229941.peg.2847 CDS AP013045.1 3248994 3249881 3 + 888 Mobile element protein - none -
fig|6666666.229941.peg.2848 CDS AP013045.1 3252477 3250132 -3 - 2346 putative TonB-dependent receptor - none -
fig|6666666.229941.peg.2849 CDS AP013045.1 3253868 3252489 -2 - 1380 Arylsulfatase regulator (Fe-S oxidoreductase) - none -
fig|6666666.229941.peg.2850 CDS AP013045.1 3254779 3255042 1 + 264 ISPg6, transposase - none -
fig|6666666.229941.peg.2851 CDS AP013045.1 3257315 3255330 -2 - 1986 Putative mobilization protein BF0133 Conjugative transposon, Bacteroidales
fig|6666666.229941.peg.2852 CDS AP013045.1 3257601 3257317 -3 - 285 Putative conjugative transposon mobilization protein BF0132 Conjugative transposon, Bacteroidales
fig|6666666.229941.peg.2853 CDS AP013045.1 3257693 3257806 2 + 114 hypothetical protein - none -
fig|6666666.229941.peg.2854 CDS AP013045.1 3257862 3259226 3 + 1365 hypothetical protein - none -
fig|6666666.229941.peg.2855 CDS AP013045.1 3259229 3259777 2 + 549 hypothetical protein - none -
fig|6666666.229941.peg.2856 CDS AP013045.1 3262207 3261611 -1 - 597 hypothetical protein - none -
fig|6666666.229941.peg.2857 CDS AP013045.1 3262232 3262528 2 + 297 Conjugative transposon protein TraN Conjugative transposon, Bacteroidales
fig|6666666.229941.peg.2858 CDS AP013045.1 3262522 3263100 1 + 579 Conjugative transposon protein TraO Conjugative transposon, Bacteroidales
fig|6666666.229941.peg.2859 CDS AP013045.1 3263113 3263400 1 + 288 Conjugative transposon protein TraQ Conjugative transposon, Bacteroidales
fig|6666666.229941.peg.2860 CDS AP013045.1 3263363 3263578 2 + 216 Conjugative transposon protein TraQ Conjugative transposon, Bacteroidales
fig|6666666.229941.peg.2861 CDS AP013045.1 3263731 3263606 -1 - 126 hypothetical protein - none -
fig|6666666.229941.peg.2862 CDS AP013045.1 3264343 3263933 -1 - 411 Membrane-flanked domain - none -
fig|6666666.229941.peg.2863 CDS AP013045.1 3265707 3266798 3 + 1092 hypothetical protein - none -
fig|6666666.229941.peg.2864 CDS AP013045.1 3268096 3268236 1 + 141 hypothetical protein - none -
fig|6666666.229941.peg.2865 CDS AP013045.1 3269164 3268463 -1 - 702 hypothetical protein - none -
fig|6666666.229941.peg.2866 CDS AP013045.1 3270187 3269672 -1 - 516 Putative membrane protein - none -
fig|6666666.229941.peg.2867 CDS AP013045.1 3270842 3270228 -2 - 615 methlytransferase, UbiE/COQ5 family - none -
fig|6666666.229941.peg.2868 CDS AP013045.1 3271429 3270857 -1 - 573 FIG00939884: hypothetical protein - none -
fig|6666666.229941.peg.2869 CDS AP013045.1 3272070 3271426 -3 - 645 hypothetical protein - none -
fig|6666666.229941.peg.2870 CDS AP013045.1 3272414 3272554 2 + 141 hypothetical protein - none -
fig|6666666.229941.peg.2871 CDS AP013045.1 3272992 3272534 -1 - 459 FIG00935622: hypothetical protein - none -
fig|6666666.229941.peg.2872 CDS AP013045.1 3273296 3273078 -2 - 219 FIG00936134: hypothetical protein - none -
fig|6666666.229941.peg.2873 CDS AP013045.1 3273551 3273360 -2 - 192 FIG00936134: hypothetical protein - none -
fig|6666666.229941.peg.2874 CDS AP013045.1 3273763 3273587 -1 - 177 Transposase - none -
fig|6666666.229941.peg.2875 CDS AP013045.1 3273788 3273913 2 + 126 hypothetical protein - none -
fig|6666666.229941.peg.2876 CDS AP013045.1 3274057 3275307 1 + 1251 Mobile element protein - none -
fig|6666666.229941.peg.2877 CDS AP013045.1 3275360 3276562 2 + 1203 Mobile element protein - none -
fig|6666666.229941.peg.2878 CDS AP013045.1 3276659 3277081 2 + 423 Mobile element protein - none -
fig|6666666.229941.peg.2879 CDS AP013045.1 3277190 3277723 2 + 534 Mobile element protein - none -
fig|6666666.229941.peg.2880 CDS AP013045.1 3277765 3278127 1 + 363 FIG00936719: hypothetical protein - none -
fig|6666666.229941.peg.2881 CDS AP013045.1 3278593 3278189 -1 - 405 hypothetical protein - none -
fig|6666666.229941.peg.2882 CDS AP013045.1 3279507 3278908 -3 - 600 Mobile element protein - none -
fig|6666666.229941.peg.2883 CDS AP013045.1 3280109 3279585 -2 - 525 Mobile element protein - none -
fig|6666666.229941.peg.2884 CDS AP013045.1 3280333 3280647 1 + 315 Transcriptional regulator, HxlR family - none -
fig|6666666.229941.peg.2885 CDS AP013045.1 3280944 3281549 3 + 606 DNA-damage-inducible protein D - none -
fig|6666666.229941.peg.2886 CDS AP013045.1 3281569 3282162 1 + 594 ThiJ/PfpI family - none -
fig|6666666.229941.peg.2887 CDS AP013045.1 3282403 3282597 1 + 195 hypothetical protein - none -
fig|6666666.229941.peg.2888 CDS AP013045.1 3283178 3284026 2 + 849 transcriptional regulator, AraC family - none -
fig|6666666.229941.peg.2889 CDS AP013045.1 3284159 3285475 2 + 1317 Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps Multidrug Resistance Efflux Pumps;
Riboflavin, FMN and FAD metabolism in plants
fig|6666666.229941.peg.2890 CDS AP013045.1 3285722 3286093 2 + 372 tetracycline resistance element mobilization regulatory protein rteC - none -
fig|6666666.229941.peg.2891 CDS AP013045.1 3286223 3286080 -2 - 144 hypothetical protein clusted with conjugative transposons, BF0131 Conjugative transposon, Bacteroidales
fig|6666666.229941.peg.2892 CDS AP013045.1 3286385 3286504 2 + 120 hypothetical protein - none -
fig|6666666.229941.peg.2893 CDS AP013045.1 3286968 3287393 3 + 426 Conjugative transposon protein TraB Conjugative transposon, Bacteroidales
fig|6666666.229941.peg.2894 CDS AP013045.1 3287991 3289241 3 + 1251 ATPase component BioM of energizing module of biotin ECF transporter - none -
fig|6666666.229941.peg.2895 CDS AP013045.1 3289257 3289880 3 + 624 hypothetical protein - none -
fig|6666666.229941.peg.2896 CDS AP013045.1 3291096 3289867 -3 - 1230 Mobile element protein - none -
fig|6666666.229941.peg.2897 CDS AP013045.1 3291188 3291436 2 + 249 hypothetical protein - none -
fig|6666666.229941.peg.2898 CDS AP013045.1 3291433 3294642 1 + 3210 hypothetical protein - none -
fig|6666666.229941.peg.2899 CDS AP013045.1 3294639 3295745 3 + 1107 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) - none -
fig|6666666.229941.peg.2900 CDS AP013045.1 3295746 3298016 3 + 2271 DNA-repair protein - none -
fig|6666666.229941.peg.2901 CDS AP013045.1 3298023 3298256 3 + 234 hypothetical protein - none -
fig|6666666.229941.peg.2902 CDS AP013045.1 3298253 3300406 2 + 2154 DNA double-strand break repair Rad50 ATPase Rad50-Mre11 DNA repair cluster
fig|6666666.229941.peg.2903 CDS AP013045.1 3300414 3300986 3 + 573 hypothetical protein - none -
fig|6666666.229941.peg.2904 CDS AP013045.1 3301495 3303729 1 + 2235 hypothetical protein - none -
fig|6666666.229941.peg.2905 CDS AP013045.1 3305284 3304130 -1 - 1155 transposase - none -
fig|6666666.229941.peg.2906 CDS AP013045.1 3306116 3308125 2 + 2010 Outer membrane vitamin B12 receptor BtuB - none -
fig|6666666.229941.peg.2907 CDS AP013045.1 3308213 3309262 2 + 1050 FIG00897452: hypothetical protein - none -
fig|6666666.229941.peg.2908 CDS AP013045.1 3309286 3310425 1 + 1140 Vitamin B12 ABC transporter, B12-binding component BtuF - none -
fig|6666666.229941.peg.2909 CDS AP013045.1 3313139 3310428 -2 - 2712 Lysyl endopeptidase (EC 3.4.21.50) Serine endopeptidase (EC 3.4.21.-)
fig|6666666.229941.peg.2910 CDS AP013045.1 3313490 3313645 2 + 156 LSU ribosomal protein L34p Cell Division Subsystem including YidCD;
RNA modification cluster;
Ribosome LSU bacterial
fig|6666666.229941.peg.2911 CDS AP013045.1 3313757 3314425 2 + 669 hypothetical protein - none -
fig|6666666.229941.peg.2912 CDS AP013045.1 3314416 3315504 1 + 1089 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) RNA pseudouridine syntheses;
Ribosome biogenesis bacterial
fig|6666666.229941.peg.2913 CDS AP013045.1 3315522 3316532 3 + 1011 D-alanine--D-alanine ligase (EC 6.3.2.4) Peptidoglycan biosynthesis--gjo;
cell division cluster containing FtsQ
fig|6666666.229941.peg.2914 CDS AP013045.1 3316572 3317738 3 + 1167 FIG00938859: hypothetical protein - none -
fig|6666666.229941.peg.2915 CDS AP013045.1 3317735 3318385 2 + 651 Redox-sensitive transcriptional regulator (AT-rich DNA-binding protein) Oxidative stress
fig|6666666.229941.peg.2916 CDS AP013045.1 3318390 3319001 3 + 612 Fumarylacetoacetate hydrolase family protein Gentisate degradation;
Salicylate and gentisate catabolism
fig|6666666.229941.peg.2917 CDS AP013045.1 3318991 3322443 1 + 3453 FIG00936082: hypothetical protein - none -
fig|6666666.229941.peg.2918 CDS AP013045.1 3322632 3323714 3 + 1083 hypothetical protein - none -
fig|6666666.229941.peg.2919 CDS AP013045.1 3324100 3327345 1 + 3246 Tricorn protease homolog 1 (EC 3.4.21.-) - none -
fig|6666666.229941.peg.2920 CDS AP013045.1 3327355 3329313 1 + 1959 Beta-galactosidase (EC 3.2.1.23) Galactosylceramide and Sulfatide metabolism;
Lactose and Galactose Uptake and Utilization;
Lactose utilization
fig|6666666.229941.peg.2921 CDS AP013045.1 3330477 3329326 -3 - 1152 putative translation initiation inhibitor - none -
fig|6666666.229941.peg.2922 CDS AP013045.1 3331262 3330474 -2 - 789 Possible hydrolase - none -
fig|6666666.229941.peg.2923 CDS AP013045.1 3331803 3331255 -3 - 549 Acyltransferase family protein - none -
fig|6666666.229941.peg.2924 CDS AP013045.1 3332135 3331836 -2 - 300 hypothetical protein - none -
fig|6666666.229941.peg.2925 CDS AP013045.1 3332288 3333943 2 + 1656 Glycogen - none -
fig|6666666.229941.peg.2926 CDS AP013045.1 3334741 3333962 -1 - 780 hypothetical protein - none -
fig|6666666.229941.peg.2927 CDS AP013045.1 3335112 3337676 3 + 2565 Glycogen phosphorylase (EC 2.4.1.1) Glycogen metabolism;
Maltose and Maltodextrin Utilization
fig|6666666.229941.peg.2928 CDS AP013045.1 3337788 3338411 3 + 624 FIG00896426: hypothetical protein - none -
fig|6666666.229941.peg.2929 CDS AP013045.1 3338430 3339242 3 + 813 D-mannonate oxidoreductase (EC 1.1.1.57) D-Galacturonate and D-Glucuronate Utilization
fig|6666666.229941.peg.2930 CDS AP013045.1 3339276 3340343 3 + 1068 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) D-Galacturonate and D-Glucuronate Utilization;
Entner-Doudoroff Pathway
fig|6666666.229941.peg.2931 CDS AP013045.1 3340304 3341653 2 + 1350 Novel D-mannonate dehydrogenase (EC 1.1.1.57) - none -
fig|6666666.229941.peg.2932 CDS AP013045.1 3342010 3341675 -1 - 336 hypothetical protein - none -
fig|6666666.229941.peg.2933 CDS AP013045.1 3342871 3342140 -1 - 732 UPF0246 protein YaaA - none -
fig|6666666.229941.peg.2934 CDS AP013045.1 3343120 3343365 1 + 246 hypothetical protein - none -
fig|6666666.229941.peg.2935 CDS AP013045.1 3343362 3346565 3 + 3204 TonB family protein / TonB-dependent receptor Ton and Tol transport systems
fig|6666666.229941.peg.2936 CDS AP013045.1 3346599 3348239 3 + 1641 putative outer membrane protein probably involved in nutrient binding - none -
fig|6666666.229941.peg.2937 CDS AP013045.1 3348490 3348627 1 + 138 hypothetical protein - none -
fig|6666666.229941.peg.2938 CDS AP013045.1 3348719 3348600 -2 - 120 hypothetical protein - none -
fig|6666666.229941.peg.2939 CDS AP013045.1 3351173 3348732 -2 - 2442 putative ferric aerobactin receptor - none -
fig|6666666.229941.peg.2940 CDS AP013045.1 3351770 3351255 -2 - 516 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC 3.1.3.45) - none -
fig|6666666.229941.peg.2941 CDS AP013045.1 3352540 3351776 -1 - 765 FIG137884: hypothetical protein Coenzyme A Biosynthesis cluster
fig|6666666.229941.peg.2942 CDS AP013045.1 3353100 3352537 -3 - 564 Nitroreductase family protein - none -
fig|6666666.229941.peg.2943 CDS AP013045.1 3354490 3353402 -1 - 1089 MdsC protein - none -
fig|6666666.229941.peg.2944 CDS AP013045.1 3354823 3354569 -1 - 255 LSU ribosomal protein L31p Ribosome LSU bacterial
fig|6666666.229941.peg.2945 CDS AP013045.1 3354981 3356042 3 + 1062 Fructose-bisphosphate aldolase class II (EC 4.1.2.13) Glycolysis and Gluconeogenesis
fig|6666666.229941.peg.2946 CDS AP013045.1 3356236 3357606 1 + 1371 DNA repair protein RadA DNA repair, bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.229941.peg.2947 CDS AP013045.1 3357642 3357968 3 + 327 Uncharacterized protein MJ1379 - none -
fig|6666666.229941.peg.2948 CDS AP013045.1 3357952 3358296 1 + 345 FIG00898898: hypothetical protein - none -
fig|6666666.229941.peg.2949 CDS AP013045.1 3358592 3359731 2 + 1140 hypothetical protein - none -
fig|6666666.229941.peg.2950 CDS AP013045.1 3359817 3361403 3 + 1587 NAD-utilizing dehydrogenases - none -
fig|6666666.229941.peg.2951 CDS AP013045.1 3361579 3361394 -1 - 186 hypothetical protein - none -
fig|6666666.229941.peg.2952 CDS AP013045.1 3361746 3361600 -3 - 147 hypothetical protein - none -
fig|6666666.229941.peg.2953 CDS AP013045.1 3362275 3362466 1 + 192 hypothetical protein - none -
fig|6666666.229941.peg.2954 CDS AP013045.1 3364111 3362537 -1 - 1575 ABC transporter, ATP-binding protein-related protein - none -
fig|6666666.229941.peg.2955 CDS AP013045.1 3364564 3364698 1 + 135 hypothetical protein - none -
fig|6666666.229941.peg.2956 CDS AP013045.1 3365481 3364903 -3 - 579 Maltose O-acetyltransferase (EC 2.3.1.79) Maltose and Maltodextrin Utilization
fig|6666666.229941.peg.2957 CDS AP013045.1 3366661 3365471 -1 - 1191 LSU m5C1962 methyltransferase RlmI RNA methylation;
Ribosome biogenesis bacterial
fig|6666666.229941.peg.2958 CDS AP013045.1 3367254 3366658 -3 - 597 3@1-5@1 exonuclease domain protein - none -
fig|6666666.229941.peg.2959 CDS AP013045.1 3367790 3367251 -2 - 540 FIG00898259: hypothetical protein - none -
fig|6666666.229941.peg.2960 CDS AP013045.1 3368676 3367795 -3 - 882 Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39) - none -
fig|6666666.229941.peg.2961 CDS AP013045.1 3368807 3369004 2 + 198 Twin-arginine translocation protein TatA Cluster-based Subsystem Grouping Hypotheticals - perhaps Proteosome Related;
Twin-arginine translocation system
fig|6666666.229941.peg.2962 CDS AP013045.1 3369095 3369439 2 + 345 Twin-arginine translocation protein TatC Cluster-based Subsystem Grouping Hypotheticals - perhaps Proteosome Related;
Twin-arginine translocation system
fig|6666666.229941.peg.2963 CDS AP013045.1 3369483 3369869 3 + 387 Twin-arginine translocation protein TatC Cluster-based Subsystem Grouping Hypotheticals - perhaps Proteosome Related;
Twin-arginine translocation system
fig|6666666.229941.peg.2964 CDS AP013045.1 3369874 3372300 1 + 2427 Monofunctional biosynthetic peptidoglycan transglycosylase (EC 2.4.2.-) - none -
fig|6666666.229941.peg.2965 CDS AP013045.1 3372397 3373932 1 + 1536 Replicative DNA helicase (EC 3.6.1.-) - none -
fig|6666666.229941.peg.2966 CDS AP013045.1 3374577 3373951 -3 - 627 hypothetical protein - none -
fig|6666666.229941.peg.2967 CDS AP013045.1 3376398 3374635 -3 - 1764 ABC transporter ATP-binding protein - none -
fig|6666666.229941.peg.2968 CDS AP013045.1 3376569 3378092 3 + 1524 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) 5-FCL-like protein;
De Novo Purine Biosynthesis;
De Novo Purine Biosynthesis
fig|6666666.229941.peg.2969 CDS AP013045.1 3378130 3379149 1 + 1020 Rod shape-determining protein MreB Bacterial Cell Division;
Bacterial Cytoskeleton;
Bacterial cell division cluster
fig|6666666.229941.peg.2970 CDS AP013045.1 3379402 3380073 1 + 672 Rod shape-determining protein MreC Bacterial Cell Division;
Bacterial Cytoskeleton;
Bacterial cell division cluster;
CBSS-354.1.peg.2917
fig|6666666.229941.peg.2971 CDS AP013045.1 3380066 3380584 2 + 519 Rod shape-determining protein MreD Bacterial Cell Division;
Bacterial Cytoskeleton;
Bacterial cell division cluster;
CBSS-354.1.peg.2917
fig|6666666.229941.peg.2972 CDS AP013045.1 3380571 3382433 3 + 1863 Penicillin-binding protein 2 (PBP-2) 16S rRNA modification within P site of ribosome;
Bacterial cell division cluster;
CBSS-83331.1.peg.3039
fig|6666666.229941.peg.2973 CDS AP013045.1 3382423 3383868 1 + 1446 Rod shape-determining protein RodA Bacterial Cytoskeleton;
Bacterial cell division cluster
fig|6666666.229941.peg.2974 CDS AP013045.1 3383923 3385755 1 + 1833 Lysyl-tRNA synthetase (class II) (EC 6.1.1.6) tRNA aminoacylation, Lys
fig|6666666.229941.peg.2975 CDS AP013045.1 3385787 3386785 2 + 999 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.229941.peg.2976 CDS AP013045.1 3386827 3388173 1 + 1347 Glucose-6-phosphate isomerase (EC 5.3.1.9) Glycolysis and Gluconeogenesis
fig|6666666.229941.peg.2977 CDS AP013045.1 3389811 3388288 -3 - 1524 FIG00896511: hypothetical protein - none -
fig|6666666.229941.peg.2978 CDS AP013045.1 3389930 3390286 2 + 357 SSU ribosomal protein S6p Ribosome SSU bacterial
fig|6666666.229941.peg.2979 CDS AP013045.1 3390289 3390573 1 + 285 SSU ribosomal protein S18p Ribosome SSU bacterial
fig|6666666.229941.peg.2980 CDS AP013045.1 3390594 3391040 3 + 447 LSU ribosomal protein L9p Ribosome LSU bacterial
fig|6666666.229941.peg.2981 CDS AP013045.1 3391146 3392288 3 + 1143 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) Murein Hydrolases;
Recycling of Peptidoglycan Amino Acids
fig|6666666.229941.rna.1 RNA AP013045.1 168831 168759 -3 - 73 tRNA-Phe-GAA tRNAs
fig|6666666.229941.rna.2 RNA AP013045.1 298651 298723 1 + 73 tRNA-Gly-GCC tRNAs
fig|6666666.229941.rna.3 RNA AP013045.1 298741 298826 1 + 86 tRNA-Leu-TAA - none -
fig|6666666.229941.rna.4 RNA AP013045.1 331334 331251 -2 - 84 tRNA-Leu-GAG tRNAs
fig|6666666.229941.rna.5 RNA AP013045.1 331428 331347 -3 - 82 tRNA-Leu-CAG tRNAs
fig|6666666.229941.rna.6 RNA AP013045.1 331623 331551 -3 - 73 tRNA-Gly-GCC tRNAs
fig|6666666.229941.rna.7 RNA AP013045.1 334423 334497 1 + 75 tRNA-Pro-TGG - none -
fig|6666666.229941.rna.8 RNA AP013045.1 382423 382314 -1 - 110 5S RNA - none -
fig|6666666.229941.rna.9 RNA AP013045.1 385480 382572 -1 - 2909 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA - none -
fig|6666666.229941.rna.10 RNA AP013045.1 385828 385755 -1 - 74 tRNA-Ala-TGC - none -
fig|6666666.229941.rna.11 RNA AP013045.1 385984 385911 -1 - 74 tRNA-Ile-GAT - none -
fig|6666666.229941.rna.12 RNA AP013045.1 387731 386264 -2 - 1468 Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA - none -
fig|6666666.229941.rna.13 RNA AP013045.1 395915 395997 2 + 83 tRNA-Tyr-GTA - none -
fig|6666666.229941.rna.14 RNA AP013045.1 396063 396135 3 + 73 tRNA-Gly-TCC - none -
fig|6666666.229941.rna.15 RNA AP013045.1 532828 532898 1 + 71 tRNA-Gln-TTG - none -
fig|6666666.229941.rna.16 RNA AP013045.1 605161 605234 1 + 74 tRNA-Pro-CGG tRNAs
fig|6666666.229941.rna.17 RNA AP013045.1 674111 674002 -2 - 110 5S RNA - none -
fig|6666666.229941.rna.18 RNA AP013045.1 677168 674260 -2 - 2909 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA - none -
fig|6666666.229941.rna.19 RNA AP013045.1 677516 677443 -2 - 74 tRNA-Ala-TGC - none -
fig|6666666.229941.rna.20 RNA AP013045.1 677672 677599 -2 - 74 tRNA-Ile-GAT - none -
fig|6666666.229941.rna.21 RNA AP013045.1 679419 677952 -3 - 1468 Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA - none -
fig|6666666.229941.rna.22 RNA AP013045.1 687974 687900 -2 - 75 tRNA-Val-TAC - none -
fig|6666666.229941.rna.23 RNA AP013045.1 763158 763231 3 + 74 tRNA-Met-CAT - none -
fig|6666666.229941.rna.24 RNA AP013045.1 1012246 1012162 -1 - 85 tRNA-Ser-TGA - none -
fig|6666666.229941.rna.25 RNA AP013045.1 1015248 1015167 -3 - 82 tRNA-Leu-TAG - none -
fig|6666666.229941.rna.26 RNA AP013045.1 1190520 1190593 3 + 74 tRNA-Ala-GGC tRNAs
fig|6666666.229941.rna.27 RNA AP013045.1 1226348 1226276 -2 - 73 tRNA-Lys-TTT - none -
fig|6666666.229941.rna.28 RNA AP013045.1 1365242 1365155 -2 - 88 tRNA-Ser-GGA tRNAs
fig|6666666.229941.rna.29 RNA AP013045.1 1474453 1474526 1 + 74 tRNA-Arg-TCT - none -
fig|6666666.229941.rna.30 RNA AP013045.1 1576728 1576801 3 + 74 tRNA-Met-CAT - none -
fig|6666666.229941.rna.31 RNA AP013045.1 1657925 1657997 2 + 73 tRNA-Thr-CGT - none -
fig|6666666.229941.rna.32 RNA AP013045.1 1719985 1719914 -1 - 72 tRNA-Glu-CTC - none -
fig|6666666.229941.rna.33 RNA AP013045.1 1720422 1720351 -3 - 72 tRNA-Glu-TTC - none -
fig|6666666.229941.rna.34 RNA AP013045.1 1934848 1934777 -1 - 72 tRNA-Arg-CCT - none -
fig|6666666.229941.rna.35 RNA AP013045.1 1943931 1944004 3 + 74 tRNA-Thr-TGT - none -
fig|6666666.229941.rna.36 RNA AP013045.1 1944124 1944195 1 + 72 tRNA-Thr-GGT - none -
fig|6666666.229941.rna.37 RNA AP013045.1 1945491 1945563 3 + 73 tRNA-Trp-CCA tRNAs
fig|6666666.229941.rna.38 RNA AP013045.1 1981453 1981370 -1 - 84 tRNA-Leu-CAA tRNAs
fig|6666666.229941.rna.39 RNA AP013045.1 2027645 2027717 2 + 73 tRNA-Lys-CTT - none -
fig|6666666.229941.rna.40 RNA AP013045.1 2151571 2151501 -1 - 71 tRNA-Cys-GCA tRNAs
fig|6666666.229941.rna.41 RNA AP013045.1 2157988 2157915 -1 - 74 tRNA-Arg-CCG tRNAs
fig|6666666.229941.rna.42 RNA AP013045.1 2201982 2202053 3 + 72 tRNA-Met-CAT - none -
fig|6666666.229941.rna.43 RNA AP013045.1 2221670 2221597 -2 - 74 tRNA-His-GTG - none -
fig|6666666.229941.rna.44 RNA AP013045.1 2314996 2315070 1 + 75 tRNA-Pro-GGG tRNAs
fig|6666666.229941.rna.45 RNA AP013045.1 2393629 2393702 1 + 74 tRNA-Arg-ACG tRNAs
fig|6666666.229941.rna.46 RNA AP013045.1 2438444 2438514 2 + 71 tRNA-Gln-CTG - none -
fig|6666666.229941.rna.47 RNA AP013045.1 2479336 2479250 -1 - 87 tRNA-Ser-CGA tRNAs
fig|6666666.229941.rna.48 RNA AP013045.1 2772304 2772390 1 + 87 tRNA-Ser-GCT - none -
fig|6666666.229941.rna.49 RNA AP013045.1 2862634 2862562 -1 - 73 tRNA-Gly-CCC tRNAs
fig|6666666.229941.rna.50 RNA AP013045.1 2966638 2966711 1 + 74 tRNA-Thr-TGT - none -
fig|6666666.229941.rna.51 RNA AP013045.1 3056782 3056855 1 + 74 tRNA-Asn-GTT - none -
fig|6666666.229941.rna.52 RNA AP013045.1 3305698 3305625 -1 - 74 tRNA-Asp-GTC - none -