fig|6666666.230098.peg.1 CDS CYYO01000001.1 180 1397 3 + 1218 Transcription termination factor Rho Transcription factors bacterial
fig|6666666.230098.peg.2 CDS CYYO01000001.1 1531 2997 1 + 1467 Choline-sulfatase (EC 3.1.6.6) - none -
fig|6666666.230098.peg.3 CDS CYYO01000001.1 3191 4513 2 + 1323 Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1) Bacterial signal recognition particle (SRP);
Universal GTPases
fig|6666666.230098.peg.4 CDS CYYO01000001.1 4525 5406 1 + 882 Methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5) / Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9) 5-FCL-like protein;
One-carbon metabolism by tetrahydropterines;
One-carbon metabolism by tetrahydropterines;
Serine-glyoxylate cycle;
Serine-glyoxylate cycle
fig|6666666.230098.peg.5 CDS CYYO01000001.1 5414 6559 2 + 1146 Capsule biosynthesis protein capA - none -
fig|6666666.230098.peg.6 CDS CYYO01000001.1 7093 6968 -1 - 126 hypothetical protein - none -
fig|6666666.230098.peg.7 CDS CYYO01000001.1 7166 8860 2 + 1695 Fe-S oxidoreductase - none -
fig|6666666.230098.peg.8 CDS CYYO01000001.1 10406 8922 -2 - 1485 Glutamine synthetase type I (EC 6.3.1.2) Ammonia assimilation;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Glutamine synthetases;
Peptidoglycan Biosynthesis
fig|6666666.230098.peg.9 CDS CYYO01000001.1 11567 10566 -2 - 1002 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) - none -
fig|6666666.230098.peg.10 CDS CYYO01000001.1 11949 13787 3 + 1839 FIG00412263: hypothetical protein - none -
fig|6666666.230098.peg.11 CDS CYYO01000001.1 14458 13826 -1 - 633 two-component system sensor histidine kinase - none -
fig|6666666.230098.peg.12 CDS CYYO01000001.1 15375 14500 -3 - 876 Transcriptional regulator, AraC family - none -
fig|6666666.230098.peg.13 CDS CYYO01000001.1 16236 18464 3 + 2229 Pyruvate formate-lyase (EC 2.3.1.54) Fermentations: Mixed acid
fig|6666666.230098.peg.14 CDS CYYO01000001.1 18466 19191 1 + 726 Pyruvate formate-lyase activating enzyme (EC 1.97.1.4) Fermentations: Mixed acid
fig|6666666.230098.peg.15 CDS CYYO01000001.1 21464 19260 -2 - 2205 Beta-glucosidase (EC 3.2.1.21) - none -
fig|6666666.230098.peg.16 CDS CYYO01000001.1 23957 21495 -2 - 2463 Beta-glucosidase (EC 3.2.1.21) - none -
fig|6666666.230098.peg.17 CDS CYYO01000001.1 25459 24134 -1 - 1326 RNA polymerase ECF-type sigma factor - none -
fig|6666666.230098.peg.18 CDS CYYO01000001.1 26008 25460 -1 - 549 RNA polymerase ECF-type sigma factor - none -
fig|6666666.230098.peg.19 CDS CYYO01000001.1 26204 26893 2 + 690 FIG00406312: hypothetical protein - none -
fig|6666666.230098.peg.20 CDS CYYO01000001.1 29503 26981 -1 - 2523 Beta-mannosidase (EC 3.2.1.25) Mannose Metabolism
fig|6666666.230098.peg.21 CDS CYYO01000001.1 31137 30181 -3 - 957 ABC-type transport, permease protein - none -
fig|6666666.230098.peg.22 CDS CYYO01000001.1 31873 31130 -1 - 744 ABC-type multidrug transport system, ATPase component - none -
fig|6666666.230098.peg.23 CDS CYYO01000001.1 33018 31876 -3 - 1143 S-layer domain - none -
fig|6666666.230098.peg.24 CDS CYYO01000001.1 33207 34262 3 + 1056 FIG00413549: hypothetical protein - none -
fig|6666666.230098.peg.25 CDS CYYO01000001.1 35378 34269 -2 - 1110 Dienelactone hydrolase and related enzymes - none -
fig|6666666.230098.peg.26 CDS CYYO01000001.1 35911 35375 -1 - 537 Flavodoxin Flavodoxin
fig|6666666.230098.peg.27 CDS CYYO01000001.1 36290 37573 2 + 1284 Integrase - none -
fig|6666666.230098.peg.28 CDS CYYO01000001.1 37637 38932 2 + 1296 FIG00937377: hypothetical protein - none -
fig|6666666.230098.peg.29 CDS CYYO01000001.1 38941 39984 1 + 1044 FIG00403226: hypothetical protein - none -
fig|6666666.230098.peg.30 CDS CYYO01000001.1 40209 40517 3 + 309 FIG00406340: hypothetical protein - none -
fig|6666666.230098.peg.31 CDS CYYO01000001.1 40526 41608 2 + 1083 FIG00898246: hypothetical protein - none -
fig|6666666.230098.peg.32 CDS CYYO01000001.1 41821 42777 1 + 957 DNA primase (EC 2.7.7.-) CBSS-349161.4.peg.2417;
Macromolecular synthesis operon
fig|6666666.230098.peg.33 CDS CYYO01000001.1 42989 44392 2 + 1404 mobilization protein - none -
fig|6666666.230098.peg.34 CDS CYYO01000001.1 44625 44834 3 + 210 FIG00631715: hypothetical protein - none -
fig|6666666.230098.peg.35 CDS CYYO01000001.1 45097 44906 -1 - 192 acetyltransferase, GNAT family - none -
fig|6666666.230098.peg.36 CDS CYYO01000001.1 45271 45119 -1 - 153 hypothetical protein - none -
fig|6666666.230098.peg.37 CDS CYYO01000001.1 45794 45282 -2 - 513 Lincosamide nucleotidyltransferase - none -
fig|6666666.230098.peg.38 CDS CYYO01000001.1 47024 45819 -2 - 1206 putative macrolide efflux pump - none -
fig|6666666.230098.peg.39 CDS CYYO01000001.1 47553 50090 3 + 2538 Recombination inhibitory protein MutS2 DNA repair, bacterial MutL-MutS system
fig|6666666.230098.peg.40 CDS CYYO01000001.1 50147 51358 2 + 1212 L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17) Glycine and Serine Utilization;
Glycine and Serine Utilization;
Pyruvate Alanine Serine Interconversions;
Pyruvate Alanine Serine Interconversions
fig|6666666.230098.peg.41 CDS CYYO01000001.1 51965 51462 -2 - 504 FIG00404078: hypothetical protein - none -
fig|6666666.230098.peg.42 CDS CYYO01000001.1 52442 52002 -2 - 441 putative periplasmic protein - none -
fig|6666666.230098.peg.43 CDS CYYO01000001.1 53824 52535 -1 - 1290 two-component system sensor histidine kinase - none -
fig|6666666.230098.peg.44 CDS CYYO01000001.1 54498 53821 -3 - 678 DNA-binding response regulator - none -
fig|6666666.230098.peg.45 CDS CYYO01000001.1 55096 54548 -1 - 549 FIG00406732: hypothetical protein - none -
fig|6666666.230098.peg.46 CDS CYYO01000001.1 55609 55157 -1 - 453 FIG00414849: hypothetical protein - none -
fig|6666666.230098.peg.47 CDS CYYO01000001.1 55970 55743 -2 - 228 FIG00408671: hypothetical protein - none -
fig|6666666.230098.peg.48 CDS CYYO01000001.1 55992 56105 3 + 114 hypothetical protein - none -
fig|6666666.230098.peg.49 CDS CYYO01000001.1 56576 56097 -2 - 480 DNA-binding protein, histone-like family - none -
fig|6666666.230098.peg.50 CDS CYYO01000001.1 56977 56792 -1 - 186 FIG00402717: hypothetical protein - none -
fig|6666666.230098.peg.51 CDS CYYO01000001.1 58139 57519 -2 - 621 putative DNA-binding protein - none -
fig|6666666.230098.peg.52 CDS CYYO01000001.1 58157 59941 2 + 1785 FIG00409117: hypothetical protein - none -
fig|6666666.230098.peg.53 CDS CYYO01000001.1 60679 59993 -1 - 687 Trk system potassium uptake protein TrkA Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Hyperosmotic potassium uptake;
Potassium homeostasis;
Potassium homeostasis
fig|6666666.230098.peg.54 CDS CYYO01000001.1 62514 60685 -3 - 1830 Potassium uptake protein, integral membrane component, KtrB - none -
fig|6666666.230098.peg.55 CDS CYYO01000001.1 62648 64015 2 + 1368 Tryptophan synthase beta chain like (EC 4.2.1.20) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.
fig|6666666.230098.peg.56 CDS CYYO01000001.1 65610 64012 -3 - 1599 Voltage-gated chloride channel family protein - none -
fig|6666666.230098.peg.57 CDS CYYO01000001.1 65859 65683 -3 - 177 FIG00405231: hypothetical protein - none -
fig|6666666.230098.peg.58 CDS CYYO01000001.1 67196 65979 -2 - 1218 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.230098.peg.59 CDS CYYO01000001.1 67335 67526 3 + 192 hypothetical protein - none -
fig|6666666.230098.peg.60 CDS CYYO01000001.1 68386 67529 -1 - 858 putative anti-sigma factor - none -
fig|6666666.230098.peg.61 CDS CYYO01000001.1 68937 68386 -3 - 552 RNA polymerase ECF-type sigma factor - none -
fig|6666666.230098.peg.62 CDS CYYO01000001.1 70251 68989 -3 - 1263 Ketol-acid reductoisomerase (EC 1.1.1.86) Branched-Chain Amino Acid Biosynthesis;
Coenzyme A Biosynthesis
fig|6666666.230098.peg.63 CDS CYYO01000001.1 71513 70485 -2 - 1029 Vitamin B12 ABC transporter, permease component BtuC Coenzyme B12 biosynthesis
fig|6666666.230098.peg.64 CDS CYYO01000001.1 72728 71595 -2 - 1134 Vitamin B12 ABC transporter, B12-binding component BtuF Coenzyme B12 biosynthesis
fig|6666666.230098.peg.65 CDS CYYO01000001.1 73834 72734 -1 - 1101 FIG00897452: hypothetical protein - none -
fig|6666666.230098.peg.66 CDS CYYO01000001.1 75939 73888 -3 - 2052 Outer membrane vitamin B12 receptor BtuB Coenzyme B12 biosynthesis
fig|6666666.230098.peg.67 CDS CYYO01000001.1 76412 77494 2 + 1083 Haloacid dehalogenase-like hydrolase - none -
fig|6666666.230098.peg.68 CDS CYYO01000001.1 77629 78174 1 + 546 ATP-dependent DNA helicase - none -
fig|6666666.230098.peg.69 CDS CYYO01000001.1 78528 80081 3 + 1554 ATP-dependent DNA helicase - none -
fig|6666666.230098.peg.70 CDS CYYO01000001.1 80086 80796 1 + 711 FIG00417751: hypothetical protein - none -
fig|6666666.230098.peg.71 CDS CYYO01000001.1 80951 81484 2 + 534 Mobile element protein - none -
fig|6666666.230098.peg.72 CDS CYYO01000001.1 81529 81660 1 + 132 hypothetical protein - none -
fig|6666666.230098.peg.73 CDS CYYO01000001.1 81672 81890 3 + 219 Mobile element protein - none -
fig|6666666.230098.peg.74 CDS CYYO01000001.1 84898 82049 -1 - 2850 helicase (Snf2/Rad54 family) - none -
fig|6666666.230098.peg.75 CDS CYYO01000001.1 89825 84900 -2 - 4926 hypothetical protein - none -
fig|6666666.230098.peg.76 CDS CYYO01000001.1 90536 89838 -2 - 699 hypothetical protein - none -
fig|6666666.230098.peg.77 CDS CYYO01000001.1 92038 90533 -1 - 1506 Methyl-accepting chemotaxis protein - none -
fig|6666666.230098.peg.78 CDS CYYO01000001.1 92551 94581 1 + 2031 Type I restriction-modification system, DNA-methyltransferase subunit M (EC 2.1.1.72) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.230098.peg.79 CDS CYYO01000001.1 94578 95990 3 + 1413 type I restriction-modification system, S subunit, putative - none -
fig|6666666.230098.peg.80 CDS CYYO01000001.1 96013 98019 1 + 2007 hypothetical protein - none -
fig|6666666.230098.peg.81 CDS CYYO01000001.1 98031 98702 3 + 672 hypothetical protein - none -
fig|6666666.230098.peg.82 CDS CYYO01000001.1 98699 101434 2 + 2736 hypothetical protein - none -
fig|6666666.230098.peg.83 CDS CYYO01000001.1 101451 105578 3 + 4128 protein kinase, putative - none -
fig|6666666.230098.peg.84 CDS CYYO01000001.1 105583 107145 1 + 1563 hypothetical protein - none -
fig|6666666.230098.peg.85 CDS CYYO01000001.1 107145 112595 3 + 5451 hypothetical protein - none -
fig|6666666.230098.peg.86 CDS CYYO01000001.1 112595 113281 2 + 687 Protein serine/threonine phosphatase PrpC, regulation of stationary phase Conserved gene cluster associated with Met-tRNA formyltransferase
fig|6666666.230098.peg.87 CDS CYYO01000001.1 114343 114525 1 + 183 hypothetical protein - none -
fig|6666666.230098.peg.88 CDS CYYO01000001.1 114629 114751 2 + 123 hypothetical protein - none -
fig|6666666.230098.peg.89 CDS CYYO01000001.1 115790 114891 -2 - 900 Mobilization protein BmgA - none -
fig|6666666.230098.peg.90 CDS CYYO01000001.1 116142 115774 -3 - 369 conserved hypothetical protein - none -
fig|6666666.230098.peg.91 CDS CYYO01000001.1 118048 116243 -1 - 1806 hypothetical protein - none -
fig|6666666.230098.peg.92 CDS CYYO01000001.1 118595 117999 -2 - 597 hypothetical protein - none -
fig|6666666.230098.peg.93 CDS CYYO01000001.1 118948 118595 -1 - 354 hypothetical protein - none -
fig|6666666.230098.peg.94 CDS CYYO01000001.1 120523 119261 -1 - 1263 integrase - none -
fig|6666666.230098.peg.95 CDS CYYO01000001.1 120747 120520 -3 - 228 putative transposase - none -
fig|6666666.230098.peg.96 CDS CYYO01000001.1 123188 121269 -2 - 1920 Chaperone protein DnaK GroEL GroES;
Heat shock dnaK gene cluster extended;
Protein chaperones
fig|6666666.230098.peg.97 CDS CYYO01000001.1 123634 125034 1 + 1401 Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps Multidrug Resistance Efflux Pumps;
Riboflavin, FMN and FAD metabolism in plants
fig|6666666.230098.peg.98 CDS CYYO01000001.1 125088 125663 3 + 576 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases CBSS-258594.1.peg.3339;
cAMP signaling in bacteria
fig|6666666.230098.peg.99 CDS CYYO01000001.1 126536 125745 -2 - 792 FIG00403782: hypothetical protein - none -
fig|6666666.230098.peg.100 CDS CYYO01000001.1 126732 127925 3 + 1194 Carboxynorspermidine dehydrogenase, putative (EC 1.1.1.-) Polyamine Metabolism
fig|6666666.230098.peg.101 CDS CYYO01000001.1 127978 128424 1 + 447 Thiol peroxidase, Bcp-type (EC 1.11.1.15) Thioredoxin-disulfide reductase
fig|6666666.230098.peg.102 CDS CYYO01000001.1 128443 129480 1 + 1038 RecA protein DNA repair, bacterial;
DNA repair, bacterial RecFOR pathway;
DNA repair system including RecA, MutS and a hypothetical protein;
RecA and RecX
fig|6666666.230098.peg.103 CDS CYYO01000001.1 130259 129549 -2 - 711 FIG00412668: hypothetical protein - none -
fig|6666666.230098.peg.104 CDS CYYO01000001.1 130790 130266 -2 - 525 FIG00402774: hypothetical protein - none -
fig|6666666.230098.peg.105 CDS CYYO01000001.1 131214 130771 -3 - 444 putative RNA polymerase ECF-type sigma factor - none -
fig|6666666.230098.peg.106 CDS CYYO01000001.1 131760 131416 -3 - 345 FIG00417241: hypothetical protein - none -
fig|6666666.230098.peg.107 CDS CYYO01000001.1 131870 132508 2 + 639 FIG00417513: hypothetical protein - none -
fig|6666666.230098.peg.108 CDS CYYO01000001.1 133832 132810 -2 - 1023 Putative membrane protein YeiH - none -
fig|6666666.230098.peg.109 CDS CYYO01000001.1 134833 133946 -1 - 888 LysR family transcriptional regulator YeiE LysR-family proteins in Escherichia coli
fig|6666666.230098.peg.110 CDS CYYO01000001.1 135444 134848 -3 - 597 FIG00402765: hypothetical protein - none -
fig|6666666.230098.peg.111 CDS CYYO01000001.1 135988 138582 1 + 2595 ClpB protein Protein chaperones;
Proteolysis in bacteria, ATP-dependent
fig|6666666.230098.peg.112 CDS CYYO01000001.1 139099 138668 -1 - 432 FIG00937286: hypothetical protein - none -
fig|6666666.230098.peg.113 CDS CYYO01000001.1 139817 139209 -2 - 609 Dephospho-CoA kinase (EC 2.7.1.24) Coenzyme A Biosynthesis
fig|6666666.230098.peg.114 CDS CYYO01000001.1 140823 139807 -3 - 1017 FIG00935560: hypothetical protein - none -
fig|6666666.230098.peg.115 CDS CYYO01000001.1 141165 140839 -3 - 327 Preprotein translocase subunit YajC (TC 3.A.5.1.1) CBSS-211586.1.peg.2832
fig|6666666.230098.peg.116 CDS CYYO01000001.1 142139 141213 -2 - 927 Transcription termination protein NusB Riboflavin synthesis cluster;
Transcription factors bacterial
fig|6666666.230098.peg.117 CDS CYYO01000001.1 142392 142766 3 + 375 FIG00897961: hypothetical protein - none -
fig|6666666.230098.peg.118 CDS CYYO01000001.1 142905 143495 3 + 591 LSU ribosomal protein L25p - none -
fig|6666666.230098.peg.119 CDS CYYO01000001.1 143757 144320 3 + 564 Peptidyl-tRNA hydrolase (EC 3.1.1.29) Cell division-ribosomal stress proteins cluster;
Sporulation-associated proteins with broader functions;
Translation termination factors bacterial
fig|6666666.230098.peg.120 CDS CYYO01000001.1 144317 144736 2 + 420 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) Cell division-ribosomal stress proteins cluster;
DNA replication cluster 1;
Heat shock dnaK gene cluster extended
fig|6666666.230098.peg.121 CDS CYYO01000001.1 144752 145738 2 + 987 Oxidoreductase - none -
fig|6666666.230098.peg.122 CDS CYYO01000001.1 148070 145797 -2 - 2274 POTASSIUM/PROTON ANTIPORTER ROSB Potassium homeostasis
fig|6666666.230098.peg.123 CDS CYYO01000001.1 149373 148225 -3 - 1149 Histidinol-phosphatase (EC 3.1.3.15) / Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) Histidine Biosynthesis;
Histidine Biosynthesis
fig|6666666.230098.peg.124 CDS CYYO01000001.1 150598 149558 -1 - 1041 Histidinol-phosphate aminotransferase (EC 2.6.1.9) Histidine Biosynthesis
fig|6666666.230098.peg.125 CDS CYYO01000001.1 151957 150665 -1 - 1293 Histidinol dehydrogenase (EC 1.1.1.23) Histidine Biosynthesis
fig|6666666.230098.peg.126 CDS CYYO01000001.1 153010 152159 -1 - 852 ATP phosphoribosyltransferase (EC 2.4.2.17) Histidine Biosynthesis;
Riboflavin synthesis cluster
fig|6666666.230098.peg.127 CDS CYYO01000001.1 153937 153380 -1 - 558 FIG00404105: hypothetical protein - none -
fig|6666666.230098.peg.128 CDS CYYO01000001.1 154032 155135 3 + 1104 FIG00417980: hypothetical protein - none -
fig|6666666.230098.peg.129 CDS CYYO01000001.1 155824 155162 -1 - 663 FIG00403349: hypothetical protein - none -
fig|6666666.230098.peg.130 CDS CYYO01000001.1 156755 156051 -2 - 705 Chloramphenicol acetyltransferase (EC 2.3.1.28) - none -
fig|6666666.230098.peg.131 CDS CYYO01000001.1 158806 156773 -1 - 2034 Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8) Biogenesis of c-type cytochromes;
Periplasmic disulfide interchange
fig|6666666.230098.peg.132 CDS CYYO01000001.1 159132 158824 -3 - 309 Dabb - none -
fig|6666666.230098.peg.133 CDS CYYO01000001.1 159235 159846 1 + 612 Uridine kinase (EC 2.7.1.48) - none -
fig|6666666.230098.peg.134 CDS CYYO01000001.1 159902 161323 2 + 1422 Transglycosylase - none -
fig|6666666.230098.peg.135 CDS CYYO01000001.1 164129 161364 -2 - 2766 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) Methionine Biosynthesis
fig|6666666.230098.peg.136 CDS CYYO01000001.1 164583 164131 -3 - 453 tmRNA-binding protein SmpB Heat shock dnaK gene cluster extended;
Translation termination factors bacterial
fig|6666666.230098.peg.137 CDS CYYO01000001.1 165164 164592 -2 - 573 FIG00402761: hypothetical protein - none -
fig|6666666.230098.peg.138 CDS CYYO01000001.1 166044 165172 -3 - 873 hypothetical protein - none -
fig|6666666.230098.peg.139 CDS CYYO01000001.1 166622 166125 -2 - 498 FIG00939540: hypothetical protein - none -
fig|6666666.230098.peg.140 CDS CYYO01000001.1 167066 167767 2 + 702 NifU-related domain containing protein - none -
fig|6666666.230098.peg.141 CDS CYYO01000001.1 167786 168796 2 + 1011 no significant homology. - none -
fig|6666666.230098.peg.142 CDS CYYO01000001.1 169893 168856 -3 - 1038 Threonine dehydrogenase and related Zn-dependent dehydrogenases Threonine degradation
fig|6666666.230098.peg.143 CDS CYYO01000001.1 170718 169921 -3 - 798 putative rRNA methylase - none -
fig|6666666.230098.peg.144 CDS CYYO01000001.1 173457 170770 -3 - 2688 FIG00898139: hypothetical protein - none -
fig|6666666.230098.peg.145 CDS CYYO01000001.1 173956 173543 -1 - 414 FIG00405916: hypothetical protein - none -
fig|6666666.230098.peg.146 CDS CYYO01000001.1 175909 173984 -1 - 1926 Probable outer membrane receptor protein - none -
fig|6666666.230098.peg.147 CDS CYYO01000001.1 175925 176050 2 + 126 hypothetical protein - none -
fig|6666666.230098.peg.148 CDS CYYO01000001.1 176958 176047 -3 - 912 FIG00410852: hypothetical protein - none -
fig|6666666.230098.peg.149 CDS CYYO01000001.1 177633 177025 -3 - 609 Galactoside O-acetyltransferase (EC 2.3.1.18) Lactose utilization
fig|6666666.230098.peg.150 CDS CYYO01000001.1 178417 177683 -1 - 735 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases CBSS-258594.1.peg.3339;
cAMP signaling in bacteria
fig|6666666.230098.peg.151 CDS CYYO01000001.1 178495 178644 1 + 150 hypothetical protein - none -
fig|6666666.230098.peg.152 CDS CYYO01000001.1 180361 178724 -1 - 1638 FIG00413372: hypothetical protein - none -
fig|6666666.230098.peg.153 CDS CYYO01000001.1 181507 180374 -1 - 1134 FIG00405618: hypothetical protein - none -
fig|6666666.230098.peg.154 CDS CYYO01000001.1 182683 181520 -1 - 1164 FIG00407786: hypothetical protein - none -
fig|6666666.230098.peg.155 CDS CYYO01000001.1 185440 182690 -1 - 2751 putative outer membrane protein probably involved in nutrient binding - none -
fig|6666666.230098.peg.156 CDS CYYO01000001.1 186062 185430 -2 - 633 FIG00409790: hypothetical protein - none -
fig|6666666.230098.peg.157 CDS CYYO01000001.1 186729 186355 -3 - 375 FIG00402998: hypothetical protein - none -
fig|6666666.230098.peg.158 CDS CYYO01000001.1 187840 186767 -1 - 1074 DNA polymerase IV (EC 2.7.7.7) DNA repair, bacterial
fig|6666666.230098.peg.159 CDS CYYO01000001.1 188177 187902 -2 - 276 conserved hypothetical protein, putative membrane protein - none -
fig|6666666.230098.peg.160 CDS CYYO01000001.1 188319 188435 3 + 117 hypothetical protein - none -
fig|6666666.230098.peg.161 CDS CYYO01000001.1 188447 190387 2 + 1941 Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4) Copper Transport System;
Copper homeostasis
fig|6666666.230098.peg.162 CDS CYYO01000001.1 190393 190827 1 + 435 Zinc uptake regulation protein ZUR Glycyl-tRNA synthetase containing cluster;
Oxidative stress
fig|6666666.230098.peg.163 CDS CYYO01000001.1 190899 192539 3 + 1641 FIG00409153: hypothetical protein - none -
fig|6666666.230098.peg.164 CDS CYYO01000001.1 192588 193418 3 + 831 3-demethylubiquinone-9 3-methyltransferase - none -
fig|6666666.230098.peg.165 CDS CYYO01000001.1 194103 193618 -3 - 486 hypothetical protein - none -
fig|6666666.230098.peg.166 CDS CYYO01000001.1 194912 194790 -2 - 123 hypothetical protein - none -
fig|6666666.230098.peg.167 CDS CYYO01000001.1 195528 198356 3 + 2829 Beta-glucosidase (EC 3.2.1.21) - none -
fig|6666666.230098.peg.168 CDS CYYO01000001.1 198458 199585 2 + 1128 FIG00411245: hypothetical protein - none -
fig|6666666.230098.peg.169 CDS CYYO01000001.1 199647 200705 3 + 1059 FIG00405120: hypothetical protein - none -
fig|6666666.230098.peg.170 CDS CYYO01000001.1 200940 200713 -3 - 228 FIG00405150: hypothetical protein - none -
fig|6666666.230098.peg.171 CDS CYYO01000001.1 202477 201086 -1 - 1392 Putative oxalate:formate antiporter - none -
fig|6666666.230098.peg.172 CDS CYYO01000001.1 202614 202501 -3 - 114 hypothetical protein - none -
fig|6666666.230098.peg.173 CDS CYYO01000001.1 203020 202631 -1 - 390 Preprotein translocase subunit SecG (TC 3.A.5.1.1) CBSS-331978.3.peg.2915;
Murein hydrolase regulation and cell death
fig|6666666.230098.peg.174 CDS CYYO01000001.1 203798 203025 -2 - 774 FIG00936113: hypothetical protein - none -
fig|6666666.230098.peg.175 CDS CYYO01000001.1 204327 203803 -3 - 525 FIG00936439: hypothetical protein - none -
fig|6666666.230098.peg.176 CDS CYYO01000001.1 205564 204314 -1 - 1251 Transcriptional regulator - none -
fig|6666666.230098.peg.177 CDS CYYO01000001.1 206663 205566 -2 - 1098 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262) ECSIG4-SIG7;
Pyridoxin (Vitamin B6) Biosynthesis
fig|6666666.230098.peg.178 CDS CYYO01000001.1 207724 206669 -1 - 1056 FIG00936241: hypothetical protein - none -
fig|6666666.230098.peg.179 CDS CYYO01000001.1 208835 207795 -2 - 1041 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) Conserved gene cluster associated with Met-tRNA formyltransferase;
RNA methylation
fig|6666666.230098.peg.180 CDS CYYO01000001.1 208971 208798 -3 - 174 hypothetical protein - none -
fig|6666666.230098.peg.181 CDS CYYO01000001.1 211126 208988 -1 - 2139 Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) Queuosine-Archaeosine Biosynthesis
fig|6666666.230098.peg.182 CDS CYYO01000001.1 212505 211249 -3 - 1257 Magnesium and cobalt efflux protein CorC CBSS-56780.10.peg.1536;
Copper homeostasis: copper tolerance;
Glycyl-tRNA synthetase containing cluster;
Magnesium transport;
tRNA-methylthiotransferase containing cluster
fig|6666666.230098.peg.183 CDS CYYO01000001.1 213064 212510 -1 - 555 FIG00935793: hypothetical protein - none -
fig|6666666.230098.peg.184 CDS CYYO01000001.1 214466 213141 -2 - 1326 TPR domain protein - none -
fig|6666666.230098.peg.185 CDS CYYO01000001.1 215774 214512 -2 - 1263 putative outer membrane protein - none -
fig|6666666.230098.peg.186 CDS CYYO01000001.1 216492 215761 -3 - 732 Pantothenate kinase type III, CoaX-like (EC 2.7.1.33) Coenzyme A Biosynthesis;
Coenzyme A Biosynthesis cluster
fig|6666666.230098.peg.187 CDS CYYO01000001.1 216623 216507 -2 - 117 hypothetical protein - none -
fig|6666666.230098.peg.188 CDS CYYO01000001.1 216998 218218 2 + 1221 FIG00937571: hypothetical protein - none -
fig|6666666.230098.peg.189 CDS CYYO01000001.1 218218 219786 1 + 1569 Alkaline phosphatase (EC 3.1.3.1) Phosphate metabolism
fig|6666666.230098.peg.190 CDS CYYO01000001.1 219884 223219 2 + 3336 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) - none -
fig|6666666.230098.peg.191 CDS CYYO01000001.1 223390 224490 1 + 1101 FIG00403450: hypothetical protein - none -
fig|6666666.230098.peg.192 CDS CYYO01000001.1 224557 225003 1 + 447 FIG00405539: hypothetical protein - none -
fig|6666666.230098.peg.193 CDS CYYO01000001.1 228112 225110 -1 - 3003 Gluconolactonase (EC 3.1.1.17) Entner-Doudoroff Pathway
fig|6666666.230098.peg.194 CDS CYYO01000001.1 231156 228142 -3 - 3015 Gluconolactonase (EC 3.1.1.17) Entner-Doudoroff Pathway
fig|6666666.230098.peg.195 CDS CYYO01000001.1 231944 231228 -2 - 717 FIG00414464: hypothetical protein - none -
fig|6666666.230098.peg.196 CDS CYYO01000001.1 233961 231970 -3 - 1992 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.230098.peg.197 CDS CYYO01000001.1 237357 233974 -3 - 3384 putative outer membrane protein probably involved in nutrient binding - none -
fig|6666666.230098.peg.198 CDS CYYO01000001.1 238624 237611 -1 - 1014 putative anti-sigma factor - none -
fig|6666666.230098.peg.199 CDS CYYO01000001.1 238762 239340 1 + 579 RNA polymerase ECF-type sigma factor - none -
fig|6666666.230098.peg.200 CDS CYYO01000001.1 239718 240212 3 + 495 FIG00897771: hypothetical protein - none -
fig|6666666.230098.peg.201 CDS CYYO01000001.1 240209 241138 2 + 930 FIG00897508: hypothetical protein - none -
fig|6666666.230098.peg.202 CDS CYYO01000001.1 241144 243558 1 + 2415 glycosyl hydrolase, family 9 - none -
fig|6666666.230098.peg.203 CDS CYYO01000001.1 246269 243636 -2 - 2634 Valyl-tRNA synthetase (EC 6.1.1.9) tRNA aminoacylation, Val
fig|6666666.230098.peg.204 CDS CYYO01000001.1 246606 247502 3 + 897 FIG00402964: hypothetical protein - none -
fig|6666666.230098.peg.205 CDS CYYO01000001.1 247535 248338 2 + 804 Nucleoside triphosphate pyrophosphohydrolase MazG (EC 3.6.1.8) Nucleoside triphosphate pyrophosphohydrolase MazG
fig|6666666.230098.peg.206 CDS CYYO01000001.1 248870 248397 -2 - 474 FIG00407145: hypothetical protein - none -
fig|6666666.230098.peg.207 CDS CYYO01000001.1 249261 248896 -3 - 366 FIG00403631: hypothetical protein - none -
fig|6666666.230098.peg.208 CDS CYYO01000001.1 249863 249309 -2 - 555 RNA polymerase ECF-type sigma factor - none -
fig|6666666.230098.peg.209 CDS CYYO01000001.1 250832 249918 -2 - 915 Ribonuclease Z (EC 3.1.26.11) tRNA processing
fig|6666666.230098.peg.210 CDS CYYO01000001.1 251649 250867 -3 - 783 FIG00412997: hypothetical protein - none -
fig|6666666.230098.peg.211 CDS CYYO01000001.1 253630 251834 -1 - 1797 SSU ribosomal protein S1p Cell division-ribosomal stress proteins cluster;
Ribosome SSU bacterial
fig|6666666.230098.peg.212 CDS CYYO01000001.1 253827 254648 3 + 822 Probable lipase (EC 3.1.1.1) - none -
fig|6666666.230098.peg.213 CDS CYYO01000001.1 255482 254652 -2 - 831 Pantothenate kinase type II, eukaryotic (EC 2.7.1.33) Coenzyme A Biosynthesis
fig|6666666.230098.peg.214 CDS CYYO01000001.1 257914 255650 -1 - 2265 FIG00406556: hypothetical protein - none -
fig|6666666.230098.peg.215 CDS CYYO01000001.1 258345 260576 3 + 2232 Glutamine synthetase type III, GlnN (EC 6.3.1.2) Ammonia assimilation;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Glutamine synthetases;
Peptidoglycan Biosynthesis
fig|6666666.230098.peg.216 CDS CYYO01000001.1 260869 261570 1 + 702 transcriptional regulator, Crp/Fnr family Oxidative stress
fig|6666666.230098.peg.217 CDS CYYO01000001.1 262604 261654 -2 - 951 Thioredoxin reductase (EC 1.8.1.9) Thioredoxin-disulfide reductase
fig|6666666.230098.peg.218 CDS CYYO01000001.1 263292 262642 -3 - 651 FIG00938215: hypothetical protein - none -
fig|6666666.230098.peg.219 CDS CYYO01000001.1 265800 263296 -3 - 2505 Cell division protein FtsK Bacterial Cell Division;
Bacterial Cytoskeleton;
Bacterial RNA-metabolizing Zn-dependent hydrolases
fig|6666666.230098.peg.220 CDS CYYO01000001.1 266683 266072 -1 - 612 FIG00416553: hypothetical protein - none -
fig|6666666.230098.peg.221 CDS CYYO01000001.1 267309 267043 -3 - 267 hypothetical protein - none -
fig|6666666.230098.peg.222 CDS CYYO01000001.1 267610 267323 -1 - 288 hypothetical protein - none -
fig|6666666.230098.peg.223 CDS CYYO01000001.1 268163 267588 -2 - 576 hypothetical protein - none -
fig|6666666.230098.peg.224 CDS CYYO01000001.1 269883 268303 -3 - 1581 Putative DNA-binding protein in cluster with Type I restriction-modification system Restriction-Modification System
fig|6666666.230098.peg.225 CDS CYYO01000001.1 270084 272903 3 + 2820 Beta-galactosidase (EC 3.2.1.23) Galactosylceramide and Sulfatide metabolism;
Lactose and Galactose Uptake and Utilization;
Lactose utilization
fig|6666666.230098.peg.226 CDS CYYO01000001.1 272993 275083 2 + 2091 putative helicase - none -
fig|6666666.230098.peg.227 CDS CYYO01000001.1 275148 275702 3 + 555 FIG00898259: hypothetical protein - none -
fig|6666666.230098.peg.228 CDS CYYO01000001.1 275706 276329 3 + 624 3@1-5@1 exonuclease domain protein - none -
fig|6666666.230098.peg.229 CDS CYYO01000001.1 276369 277550 3 + 1182 LSU m5C1962 methyltransferase RlmI RNA methylation;
Ribosome biogenesis bacterial
fig|6666666.230098.peg.230 CDS CYYO01000001.1 277865 279121 2 + 1257 Nucleoside permease NupG - none -
fig|6666666.230098.peg.231 CDS CYYO01000001.1 279148 279732 1 + 585 FIG00402727: hypothetical protein - none -
fig|6666666.230098.peg.232 CDS CYYO01000001.1 279734 280432 2 + 699 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) Heat shock dnaK gene cluster extended;
RNA methylation
fig|6666666.230098.peg.233 CDS CYYO01000001.1 280455 282008 3 + 1554 FIG00405862: hypothetical protein - none -
fig|6666666.230098.peg.234 CDS CYYO01000001.1 282086 282694 2 + 609 ABC transporter ATP-binding protein - none -
fig|6666666.230098.peg.235 CDS CYYO01000001.1 282706 283911 1 + 1206 FIG00936964: hypothetical protein - none -
fig|6666666.230098.peg.236 CDS CYYO01000001.1 283947 286220 3 + 2274 DNA-binding response regulator, AraC family - none -
fig|6666666.230098.peg.237 CDS CYYO01000001.1 286315 288657 1 + 2343 Alpha-xylosidase (EC 3.2.1.-) Xylose utilization
fig|6666666.230098.peg.238 CDS CYYO01000001.1 290664 288805 -3 - 1860 Putative transport protein - none -
fig|6666666.230098.peg.239 CDS CYYO01000001.1 291018 290743 -3 - 276 FIG00413640: hypothetical protein - none -
fig|6666666.230098.peg.240 CDS CYYO01000001.1 291179 291478 2 + 300 FIG00417535: hypothetical protein - none -
fig|6666666.230098.peg.241 CDS CYYO01000001.1 291998 291648 -2 - 351 Transcriptional regulator, HxlR family - none -
fig|6666666.230098.peg.242 CDS CYYO01000001.1 292212 292874 3 + 663 Uracil-DNA glycosylase, family 1 DNA Repair Base Excision;
Uracil-DNA glycosylase
fig|6666666.230098.peg.243 CDS CYYO01000001.1 293586 292879 -3 - 708 FIG00415273: hypothetical protein - none -
fig|6666666.230098.peg.244 CDS CYYO01000001.1 293725 293570 -1 - 156 hypothetical protein - none -
fig|6666666.230098.peg.245 CDS CYYO01000001.1 293780 294637 2 + 858 Transcriptional regulator, AraC family - none -
fig|6666666.230098.peg.246 CDS CYYO01000001.1 294980 295876 2 + 897 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.230098.peg.247 CDS CYYO01000001.1 296896 295883 -1 - 1014 putative N-acetylmuramoyl-L-alanine amidase - none -
fig|6666666.230098.peg.248 CDS CYYO01000001.1 297037 298317 1 + 1281 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) Methionine Biosynthesis;
Methionine Biosynthesis
fig|6666666.230098.peg.249 CDS CYYO01000001.1 300942 298429 -3 - 2514 Beta-hexosaminidase (EC 3.2.1.52) - none -
fig|6666666.230098.peg.250 CDS CYYO01000001.1 301109 303397 2 + 2289 NADP-dependent malic enzyme (EC 1.1.1.40) Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.230098.peg.251 CDS CYYO01000001.1 303761 305098 2 + 1338 NAD-specific glutamate dehydrogenase (EC 1.4.1.2) / NADP-specific glutamate dehydrogenase (EC 1.4.1.4) Arginine and Ornithine Degradation;
Glutamate dehydrogenases;
Glutamate dehydrogenases;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Proline Synthesis
fig|6666666.230098.peg.252 CDS CYYO01000001.1 305285 306499 2 + 1215 Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family G3E family of P-loop GTPases (metallocenter biosynthesis)
fig|6666666.230098.peg.253 CDS CYYO01000001.1 308799 306595 -3 - 2205 Hyaluronidase - none -
fig|6666666.230098.peg.254 CDS CYYO01000001.1 309498 308920 -3 - 579 Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) NAD and NADP cofactor biosynthesis global
fig|6666666.230098.peg.255 CDS CYYO01000001.1 309757 309521 -1 - 237 FIG00408312: hypothetical protein - none -
fig|6666666.230098.peg.256 CDS CYYO01000001.1 310317 309754 -3 - 564 Guanylate kinase (EC 2.7.4.8) CBSS-323097.3.peg.2594;
Purine conversions
fig|6666666.230098.peg.257 CDS CYYO01000001.1 311238 310354 -3 - 885 Protein YicC CBSS-323097.3.peg.2594
fig|6666666.230098.peg.258 CDS CYYO01000001.1 311330 312022 2 + 693 TsaB protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Ribosome biogenesis bacterial;
YgjD and YeaZ;
YjeE
fig|6666666.230098.peg.259 CDS CYYO01000001.1 312123 312743 3 + 621 FIG00936255: hypothetical protein - none -
fig|6666666.230098.peg.260 CDS CYYO01000001.1 312835 314142 1 + 1308 UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7) Peptidoglycan Biosynthesis;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.230098.peg.261 CDS CYYO01000001.1 314144 314680 2 + 537 16S rRNA processing protein RimM Ribosome biogenesis bacterial
fig|6666666.230098.peg.262 CDS CYYO01000001.1 314677 315534 1 + 858 Membrane proteins related to metalloendopeptidases - none -
fig|6666666.230098.peg.263 CDS CYYO01000001.1 315571 316716 1 + 1146 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.267) CBSS-83331.1.peg.3039;
Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.230098.peg.264 CDS CYYO01000001.1 316829 318160 2 + 1332 Membrane-associated zinc metalloprotease - none -
fig|6666666.230098.peg.265 CDS CYYO01000001.1 319192 318293 -1 - 900 Meso-diaminopimelate D-dehydrogenase (EC 1.4.1.16) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.230098.peg.266 CDS CYYO01000001.1 319388 319990 2 + 603 Holliday junction DNA helicase RuvA RuvABC plus a hypothetical
fig|6666666.230098.peg.267 CDS CYYO01000001.1 320029 321006 1 + 978 FIG00411761: hypothetical protein - none -
fig|6666666.230098.peg.268 CDS CYYO01000001.1 322365 321202 -3 - 1164 Xaa-Pro aminopeptidase (EC 3.4.11.9) Aminopeptidases (EC 3.4.11.-)
fig|6666666.230098.peg.269 CDS CYYO01000001.1 323840 322503 -2 - 1338 NAD-specific glutamate dehydrogenase (EC 1.4.1.2) Glutamate dehydrogenases;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.230098.peg.270 CDS CYYO01000001.1 326360 324219 -2 - 2142 Alpha-glucosidase SusB (EC 3.2.1.20) Cellulosome
fig|6666666.230098.peg.271 CDS CYYO01000001.1 327629 326370 -2 - 1260 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) Cellulosome
fig|6666666.230098.peg.272 CDS CYYO01000001.1 331014 329212 -3 - 1803 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.230098.peg.273 CDS CYYO01000001.1 333959 331038 -2 - 2922 SusC, outer membrane protein involved in starch binding Cellulosome
fig|6666666.230098.peg.274 CDS CYYO01000001.1 335869 334205 -1 - 1665 Regulatory protein SusR Cellulosome
fig|6666666.230098.peg.275 CDS CYYO01000001.1 336071 338566 2 + 2496 glycosyl hydrolase, family 9 - none -
fig|6666666.230098.peg.276 CDS CYYO01000001.1 338609 339412 2 + 804 40-residue YVTN beta-propeller repeat protein - none -
fig|6666666.230098.peg.277 CDS CYYO01000001.1 341559 339997 -3 - 1563 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.230098.peg.278 CDS CYYO01000001.1 344670 341581 -3 - 3090 SusC, outer membrane protein involved in starch binding Cellulosome
fig|6666666.230098.peg.279 CDS CYYO01000001.1 346654 344945 -1 - 1710 Chitinase (EC 3.2.1.14) - none -
fig|6666666.230098.peg.280 CDS CYYO01000001.1 347950 346685 -1 - 1266 Predicted glucose transporter in maltodextrin utilization gene cluster Maltose and Maltodextrin Utilization
fig|6666666.230098.peg.281 CDS CYYO01000001.1 348747 348004 -3 - 744 Glucosamine-6-phosphate deaminase (EC 3.5.99.6) Sialic Acid Metabolism
fig|6666666.230098.peg.282 CDS CYYO01000001.1 349699 348758 -1 - 942 Sugar kinase and transcription regulator (EC 2.7.1.-) - none -
fig|6666666.230098.peg.283 CDS CYYO01000001.1 353762 349830 -2 - 3933 DNA-binding response regulator, AraC family - none -
fig|6666666.230098.peg.284 CDS CYYO01000001.1 353888 356857 2 + 2970 Phosphoenolpyruvate synthase / Pyruvate phosphate dikinase - none -
fig|6666666.230098.peg.285 CDS CYYO01000001.1 357929 356859 -2 - 1071 hypothetical protein - none -
fig|6666666.230098.peg.286 CDS CYYO01000001.1 357997 358908 1 + 912 1,4-dihydroxy-2-naphthoate polyprenyltransferase (EC 2.5.1.74) - none -
fig|6666666.230098.peg.287 CDS CYYO01000001.1 360097 358955 -1 - 1143 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) CBSS-296591.1.peg.2330;
Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.230098.peg.288 CDS CYYO01000001.1 361057 360185 -1 - 873 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.230098.peg.289 CDS CYYO01000001.1 361916 361422 -2 - 495 FIG00937838: hypothetical protein - none -
fig|6666666.230098.peg.290 CDS CYYO01000001.1 362072 364138 2 + 2067 Polyphosphate kinase (EC 2.7.4.1) High affinity phosphate transporter and control of PHO regulon;
Phosphate metabolism;
Polyphosphate;
Purine conversions
fig|6666666.230098.peg.291 CDS CYYO01000001.1 364207 366519 1 + 2313 Probable low-affinity inorganic phosphate transporter Phosphate metabolism
fig|6666666.230098.peg.292 CDS CYYO01000001.1 368023 366563 -1 - 1461 tRNA nucleotidyltransferase (EC 2.7.7.21) (EC 2.7.7.25) tRNA nucleotidyltransferase
fig|6666666.230098.peg.293 CDS CYYO01000001.1 368123 368953 2 + 831 FIG00414501: hypothetical protein - none -
fig|6666666.230098.peg.294 CDS CYYO01000001.1 369423 369022 -3 - 402 Two-component system sensor histidine kinase - none -
fig|6666666.230098.peg.295 CDS CYYO01000001.1 369510 371144 3 + 1635 ABC transporter ATP-binding protein uup - none -
fig|6666666.230098.peg.296 CDS CYYO01000001.1 371228 372604 2 + 1377 Putative Dihydrolipoamide dehydrogenase (EC 1.8.1.4); Mercuric ion reductase (EC 1.16.1.1); PF00070 family, FAD-dependent NAD(P)-disulphide oxidoreductase Mercuric reductase;
Mercuric reductase;
Mercury resistance operon;
TCA Cycle
fig|6666666.230098.peg.297 CDS CYYO01000001.1 372643 373077 1 + 435 FIG00403272: hypothetical protein - none -
fig|6666666.230098.peg.298 CDS CYYO01000001.1 373197 374417 3 + 1221 Cation efflux system protein - none -
fig|6666666.230098.peg.299 CDS CYYO01000001.1 374586 377708 3 + 3123 Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA Cobalt-zinc-cadmium resistance;
Cobalt-zinc-cadmium resistance
fig|6666666.230098.peg.300 CDS CYYO01000001.1 377701 378927 1 + 1227 FIG00406501: hypothetical protein - none -
fig|6666666.230098.peg.301 CDS CYYO01000001.1 380216 378984 -2 - 1233 proteinase inhibitor I4, serpin - none -
fig|6666666.230098.peg.302 CDS CYYO01000001.1 381951 380494 -3 - 1458 tRNA and rRNA cytosine-C5-methylases - none -
fig|6666666.230098.peg.303 CDS CYYO01000001.1 384465 382042 -3 - 2424 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins Ton and Tol transport systems
fig|6666666.230098.peg.304 CDS CYYO01000001.1 384853 384530 -1 - 324 FIG00410804: hypothetical protein - none -
fig|6666666.230098.peg.305 CDS CYYO01000001.1 385127 385750 2 + 624 FIG00403458: hypothetical protein - none -
fig|6666666.230098.peg.306 CDS CYYO01000001.1 385756 386292 1 + 537 RNA polymerase sigma factor RpoE Transcription initiation, bacterial sigma factors
fig|6666666.230098.peg.307 CDS CYYO01000001.1 386279 386605 2 + 327 FIG00403275: hypothetical protein - none -
fig|6666666.230098.peg.308 CDS CYYO01000001.1 386668 387897 1 + 1230 Cardiolipin synthetase (EC 2.7.8.-) Cardiolipin synthesis;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.230098.peg.309 CDS CYYO01000001.1 387972 388766 3 + 795 Thymidylate synthase (EC 2.1.1.45) Folate Biosynthesis
fig|6666666.230098.peg.310 CDS CYYO01000001.1 388812 389300 3 + 489 Dihydrofolate reductase (EC 1.5.1.3) 5-FCL-like protein;
Folate Biosynthesis
fig|6666666.230098.peg.311 CDS CYYO01000001.1 389779 389303 -1 - 477 Transcriptional regulator, AsnC family - none -
fig|6666666.230098.peg.312 CDS CYYO01000001.1 389946 389806 -3 - 141 hypothetical protein - none -
fig|6666666.230098.peg.313 CDS CYYO01000001.1 390019 391296 1 + 1278 Peptidase M64 - none -
fig|6666666.230098.peg.314 CDS CYYO01000001.1 391372 391857 1 + 486 FIG00897901: hypothetical protein - none -
fig|6666666.230098.peg.315 CDS CYYO01000001.1 392397 391933 -3 - 465 FIG00935740: hypothetical protein - none -
fig|6666666.230098.peg.316 CDS CYYO01000001.1 392987 392397 -2 - 591 Biopolymer transport exbD protein. - none -
fig|6666666.230098.peg.317 CDS CYYO01000001.1 393464 393024 -2 - 441 FIG00404263: hypothetical protein - none -
fig|6666666.230098.peg.318 CDS CYYO01000001.1 394318 393515 -1 - 804 Ferric siderophore transport system, biopolymer transport protein ExbB Ton and Tol transport systems
fig|6666666.230098.peg.319 CDS CYYO01000001.1 395425 394646 -1 - 780 Putative deoxyribonuclease YcfH YcfH
fig|6666666.230098.peg.320 CDS CYYO01000001.1 396135 395434 -3 - 702 FIG00403149: hypothetical protein - none -
fig|6666666.230098.peg.321 CDS CYYO01000001.1 397194 396154 -3 - 1041 Dimethylallyltransferase (EC 2.5.1.1) / (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10) / Geranylgeranyl diphosphate synthase (EC 2.5.1.29) Isoprenoid Biosynthesis;
Isoprenoid Biosynthesis;
Isoprenoid Biosynthesis: Interconversions;
Isoprenoinds for Quinones;
Isoprenoinds for Quinones;
Isoprenoinds for Quinones;
Polyprenyl Diphosphate Biosynthesis;
Polyprenyl Diphosphate Biosynthesis
fig|6666666.230098.peg.322 CDS CYYO01000001.1 397895 397209 -2 - 687 Ferric siderophore transport system, periplasmic binding protein TonB Hemin transport system;
Ton and Tol transport systems
fig|6666666.230098.peg.323 CDS CYYO01000001.1 398031 397912 -3 - 120 hypothetical protein - none -
fig|6666666.230098.peg.324 CDS CYYO01000001.1 398030 398854 2 + 825 Cytidylate kinase (EC 2.7.4.25) - none -
fig|6666666.230098.peg.325 CDS CYYO01000001.1 398862 399728 3 + 867 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.230098.peg.326 CDS CYYO01000001.1 399868 400848 1 + 981 6-phosphofructokinase (EC 2.7.1.11) Glycolysis and Gluconeogenesis
fig|6666666.230098.peg.327 CDS CYYO01000001.1 401712 400909 -3 - 804 retinol dehydrogenase 13 (all-trans and 9-cis) - none -
fig|6666666.230098.peg.328 CDS CYYO01000001.1 403008 401785 -3 - 1224 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) - none -
fig|6666666.230098.peg.329 CDS CYYO01000001.1 403851 403081 -3 - 771 3-oxo-5-alpha-steroid 4-dehydrogenase - none -
fig|6666666.230098.peg.330 CDS CYYO01000001.1 403864 403986 1 + 123 hypothetical protein - none -
fig|6666666.230098.peg.331 CDS CYYO01000001.1 405441 404098 -3 - 1344 Citrate synthase (si) (EC 2.3.3.1) Serine-glyoxylate cycle;
TCA Cycle
fig|6666666.230098.peg.332 CDS CYYO01000001.1 406614 405454 -3 - 1161 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) 5-FCL-like protein;
TCA Cycle
fig|6666666.230098.peg.333 CDS CYYO01000001.1 408843 406618 -3 - 2226 Aconitate hydratase (EC 4.2.1.3) Serine-glyoxylate cycle;
TCA Cycle
fig|6666666.230098.peg.334 CDS CYYO01000001.1 408976 410889 1 + 1914 putative helicase - none -
fig|6666666.230098.peg.335 CDS CYYO01000001.1 411994 410951 -1 - 1044 Ketol-acid reductoisomerase (EC 1.1.1.86) Branched-Chain Amino Acid Biosynthesis;
Coenzyme A Biosynthesis
fig|6666666.230098.peg.336 CDS CYYO01000001.1 412797 412045 -3 - 753 Acyl-ACP thioesterase - none -
fig|6666666.230098.peg.337 CDS CYYO01000001.1 413354 412794 -2 - 561 Acetolactate synthase small subunit (EC 2.2.1.6) Acetolactate synthase subunits;
Branched-Chain Amino Acid Biosynthesis
fig|6666666.230098.peg.338 CDS CYYO01000001.1 415138 413387 -1 - 1752 Acetolactate synthase large subunit (EC 2.2.1.6) Acetolactate synthase subunits;
Branched-Chain Amino Acid Biosynthesis
fig|6666666.230098.peg.339 CDS CYYO01000001.1 417068 415230 -2 - 1839 Dihydroxy-acid dehydratase (EC 4.2.1.9) Branched-Chain Amino Acid Biosynthesis
fig|6666666.230098.peg.340 CDS CYYO01000001.1 417381 417500 3 + 120 hypothetical protein - none -
fig|6666666.230098.peg.341 CDS CYYO01000001.1 417522 418094 3 + 573 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) G3E family of P-loop GTPases (metallocenter biosynthesis);
Peptidyl-prolyl cis-trans isomerase;
Potassium homeostasis
fig|6666666.230098.peg.342 CDS CYYO01000001.1 419471 418194 -2 - 1278 Putative inner membrane protein - none -
fig|6666666.230098.peg.343 CDS CYYO01000001.1 420625 419591 -1 - 1035 FIG00405746: hypothetical protein - none -
fig|6666666.230098.peg.344 CDS CYYO01000001.1 421156 422232 1 + 1077 Chorismate synthase (EC 4.2.3.5) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.230098.peg.345 CDS CYYO01000001.1 422242 423597 1 + 1356 Catalyzes the cleavage of p-aminobenzoyl-glutamate to p-aminobenzoate and glutamate, subunit A - none -
fig|6666666.230098.peg.346 CDS CYYO01000001.1 423613 424692 1 + 1080 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) Recycling of Peptidoglycan Amino Sugars
fig|6666666.230098.peg.347 CDS CYYO01000001.1 424707 425261 3 + 555 ADP-ribose pyrophosphatase (EC 3.6.1.13) NAD and NADP cofactor biosynthesis global;
Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.230098.peg.348 CDS CYYO01000001.1 427462 425273 -1 - 2190 DNA topoisomerase III (EC 5.99.1.2) DNA processing cluster;
DNA topoisomerases, Type I, ATP-independent
fig|6666666.230098.peg.349 CDS CYYO01000001.1 429923 427776 -2 - 2148 Methylmalonyl-CoA mutase (EC 5.4.99.2) G3E family of P-loop GTPases (metallocenter biosynthesis);
Propionyl-CoA to Succinyl-CoA Module;
Serine-glyoxylate cycle
fig|6666666.230098.peg.350 CDS CYYO01000001.1 431867 429966 -2 - 1902 Methylmalonyl-CoA mutase (EC 5.4.99.2) G3E family of P-loop GTPases (metallocenter biosynthesis);
Propionyl-CoA to Succinyl-CoA Module;
Serine-glyoxylate cycle
fig|6666666.230098.peg.351 CDS CYYO01000001.1 432216 433799 3 + 1584 putative membrane protein - none -
fig|6666666.230098.peg.352 CDS CYYO01000001.1 434822 433893 -2 - 930 FIG00407675: hypothetical protein - none -
fig|6666666.230098.peg.353 CDS CYYO01000001.1 435469 434837 -1 - 633 Cytidylate kinase (EC 2.7.4.25) - none -
fig|6666666.230098.peg.354 CDS CYYO01000001.1 436909 435554 -1 - 1356 Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps Multidrug Resistance Efflux Pumps;
Riboflavin, FMN and FAD metabolism in plants
fig|6666666.230098.peg.355 CDS CYYO01000001.1 437090 438754 2 + 1665 Lysyl-tRNA synthetase (class II) (EC 6.1.1.6) tRNA aminoacylation, Lys
fig|6666666.230098.peg.356 CDS CYYO01000001.1 438853 439848 1 + 996 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) Glycerol and Glycerol-3-phosphate Uptake and Utilization;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.230098.peg.357 CDS CYYO01000001.1 439897 441234 1 + 1338 Glucose-6-phosphate isomerase (EC 5.3.1.9) Glycolysis and Gluconeogenesis
fig|6666666.230098.peg.358 CDS CYYO01000001.1 441364 442119 1 + 756 Beta-phosphoglucomutase (EC 5.4.2.6) Maltose and Maltodextrin Utilization;
Trehalose Uptake and Utilization
fig|6666666.230098.peg.359 CDS CYYO01000001.1 442807 442175 -1 - 633 FIG00936531: hypothetical protein - none -
fig|6666666.230098.peg.360 CDS CYYO01000001.1 443018 443440 2 + 423 FIG00638667: hypothetical protein - none -
fig|6666666.230098.peg.361 CDS CYYO01000001.1 444743 443862 -2 - 882 FIG00406423: hypothetical protein - none -
fig|6666666.230098.peg.362 CDS CYYO01000001.1 445682 444852 -2 - 831 Transcriptional regulator, MerR family Cobalt-zinc-cadmium resistance
fig|6666666.230098.peg.363 CDS CYYO01000001.1 446246 445773 -2 - 474 Arsenate reductase (EC 1.20.4.1) Anaerobic respiratory reductases
fig|6666666.230098.peg.364 CDS CYYO01000001.1 446894 446253 -2 - 642 Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11) / Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) Peptide methionine sulfoxide reductase;
Peptide methionine sulfoxide reductase
fig|6666666.230098.peg.365 CDS CYYO01000001.1 447301 448338 1 + 1038 Aspartate--ammonia ligase (EC 6.3.1.1) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.230098.peg.366 CDS CYYO01000001.1 448443 449105 3 + 663 Uracil-DNA glycosylase, family 1 DNA Repair Base Excision;
Uracil-DNA glycosylase
fig|6666666.230098.peg.367 CDS CYYO01000001.1 451730 449109 -2 - 2622 Outer membrane protein Imp, required for envelope biogenesis / Organic solvent tolerance protein precursor ECSIG4-SIG7
fig|6666666.230098.peg.368 CDS CYYO01000001.1 451713 451844 3 + 132 hypothetical protein - none -
fig|6666666.230098.peg.369 CDS CYYO01000001.1 452502 451966 -3 - 537 HDIG domain protein - none -
fig|6666666.230098.peg.370 CDS CYYO01000001.1 454263 452530 -3 - 1734 Polymyxin resistance protein ArnT, undecaprenyl phosphate-alpha-L-Ara4N transferase; Melittin resistance protein PqaB - none -
fig|6666666.230098.peg.371 CDS CYYO01000001.1 454451 454828 2 + 378 FIG00407687: hypothetical protein - none -
fig|6666666.230098.peg.372 CDS CYYO01000001.1 454880 455851 2 + 972 Glycosyltransferase CBSS-258594.1.peg.3339
fig|6666666.230098.peg.373 CDS CYYO01000001.1 456030 455911 -3 - 120 hypothetical protein - none -
fig|6666666.230098.peg.374 CDS CYYO01000001.1 456210 456497 3 + 288 putative membrane protein - none -
fig|6666666.230098.peg.375 CDS CYYO01000001.1 456628 456479 -1 - 150 hypothetical protein - none -
fig|6666666.230098.peg.376 CDS CYYO01000001.1 456754 457236 1 + 483 Histone acetyltransferase HPA2 and related acetyltransferases - none -
fig|6666666.230098.peg.377 CDS CYYO01000001.1 457645 458205 1 + 561 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases CBSS-258594.1.peg.3339;
cAMP signaling in bacteria
fig|6666666.230098.peg.378 CDS CYYO01000001.1 458373 458624 3 + 252 hypothetical protein - none -
fig|6666666.230098.peg.379 CDS CYYO01000001.1 459590 458637 -2 - 954 putative sodium-dependent transporter - none -
fig|6666666.230098.peg.380 CDS CYYO01000001.1 459791 461026 2 + 1236 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) Murein Hydrolases;
Recycling of Peptidoglycan Amino Acids
fig|6666666.230098.peg.381 CDS CYYO01000001.1 461040 461933 3 + 894 Mce4/Rv3499c/MTV023.06c protein - none -
fig|6666666.230098.peg.382 CDS CYYO01000001.1 462285 463670 3 + 1386 Chromosomal replication initiator protein DnaA Cell Division Subsystem including YidCD;
DNA replication cluster 1
fig|6666666.230098.peg.383 CDS CYYO01000001.1 464545 463763 -1 - 783 Oxygen-insensitive NADPH nitroreductase (EC 1.-.-.-) - none -
fig|6666666.230098.peg.384 CDS CYYO01000001.1 464915 467452 2 + 2538 Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) Inteins;
Ribonucleotide reduction
fig|6666666.230098.peg.385 CDS CYYO01000001.1 467584 470277 1 + 2694 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) Glycogen metabolism;
Maltose and Maltodextrin Utilization
fig|6666666.230098.peg.386 CDS CYYO01000001.1 470798 470917 2 + 120 Dihydroneopterin aldolase (EC 4.1.2.25) Folate Biosynthesis;
Folate biosynthesis cluster
fig|6666666.230098.peg.387 CDS CYYO01000001.1 472089 471571 -3 - 519 Methylglyoxal synthase (EC 4.2.3.3) Methylglyoxal Metabolism
fig|6666666.230098.peg.388 CDS CYYO01000001.1 473153 472137 -2 - 1017 Glycosyltransferase CBSS-258594.1.peg.3339
fig|6666666.230098.peg.389 CDS CYYO01000001.1 474045 473146 -3 - 900 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) - none -
fig|6666666.230098.peg.390 CDS CYYO01000001.1 475416 474100 -3 - 1317 tRNA-t(6)A37 methylthiotransferase Heat shock dnaK gene cluster extended;
Methylthiotransferases
fig|6666666.230098.peg.391 CDS CYYO01000001.1 475502 477175 2 + 1674 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) Biotin biosynthesis
fig|6666666.230098.peg.392 CDS CYYO01000001.1 477306 477545 3 + 240 FIG00405659: hypothetical protein - none -
fig|6666666.230098.peg.393 CDS CYYO01000001.1 477939 478124 3 + 186 RNA binding protein - none -
fig|6666666.230098.peg.394 CDS CYYO01000001.1 478850 478401 -2 - 450 LSU ribosomal protein L9p - none -
fig|6666666.230098.peg.395 CDS CYYO01000001.1 479138 478866 -2 - 273 SSU ribosomal protein S18p @ SSU ribosomal protein S18p, zinc-independent Ribosome SSU bacterial;
Ribosome SSU bacterial
fig|6666666.230098.peg.396 CDS CYYO01000001.1 479485 479141 -1 - 345 SSU ribosomal protein S6p Ribosome SSU bacterial
fig|6666666.230098.peg.397 CDS CYYO01000001.1 479645 480091 2 + 447 Transcriptional regulator, MarR family - none -
fig|6666666.230098.peg.398 CDS CYYO01000001.1 480292 480468 1 + 177 FIG00407300: hypothetical protein - none -
fig|6666666.230098.peg.399 CDS CYYO01000001.1 481259 480558 -2 - 702 Transcriptional regulatory protein rprY - none -
fig|6666666.230098.peg.400 CDS CYYO01000001.1 482773 481265 -1 - 1509 Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-) Potassium homeostasis
fig|6666666.230098.peg.401 CDS CYYO01000001.1 485266 483110 -1 - 2157 Translation elongation factor G-related protein Translation elongation factor G family;
Translation elongation factors bacterial
fig|6666666.230098.peg.402 CDS CYYO01000001.1 485655 487286 3 + 1632 Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Folate Biosynthesis;
Tryptophan synthesis
fig|6666666.230098.peg.403 CDS CYYO01000001.1 487434 490754 3 + 3321 Beta-galactosidase (EC 3.2.1.23) Galactosylceramide and Sulfatide metabolism;
Lactose and Galactose Uptake and Utilization;
Lactose utilization
fig|6666666.230098.peg.404 CDS CYYO01000001.1 492050 490869 -2 - 1182 Mannonate dehydratase (EC 4.2.1.8) D-Galacturonate and D-Glucuronate Utilization
fig|6666666.230098.peg.405 CDS CYYO01000001.1 492655 492816 1 + 162 DNA-3-methyladenine glycosylase (EC 3.2.2.20) DNA Repair Base Excision
fig|6666666.230098.peg.406 CDS CYYO01000001.1 493927 492776 -1 - 1152 Beta-glucanase - none -
fig|6666666.230098.peg.407 CDS CYYO01000001.1 496095 494026 -3 - 2070 Putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.230098.peg.408 CDS CYYO01000001.1 499385 496107 -2 - 3279 TonB family protein / TonB-dependent receptor Ton and Tol transport systems
fig|6666666.230098.peg.409 CDS CYYO01000001.1 503625 499552 -3 - 4074 DNA-binding response regulator, AraC family - none -
fig|6666666.230098.peg.410 CDS CYYO01000001.1 503845 504285 1 + 441 hypothetical protein - none -
fig|6666666.230098.peg.411 CDS CYYO01000001.1 504691 504578 -1 - 114 hypothetical protein - none -
fig|6666666.230098.peg.412 CDS CYYO01000001.1 504858 506951 3 + 2094 putative helicase - none -
fig|6666666.230098.peg.413 CDS CYYO01000001.1 508168 506948 -1 - 1221 ATPase component BioM of energizing module of biotin ECF transporter Biotin biosynthesis
fig|6666666.230098.peg.414 CDS CYYO01000001.1 508306 508884 1 + 579 DNA-3-methyladenine glycosylase (EC 3.2.2.20) DNA Repair Base Excision
fig|6666666.230098.peg.415 CDS CYYO01000001.1 512105 509010 -2 - 3096 Beta-galactosidase (EC 3.2.1.23) Galactosylceramide and Sulfatide metabolism;
Lactose and Galactose Uptake and Utilization;
Lactose utilization
fig|6666666.230098.peg.416 CDS CYYO01000001.1 514232 512283 -2 - 1950 Alpha-N-arabinofuranosidase (EC 3.2.1.55) L-Arabinose utilization
fig|6666666.230098.peg.417 CDS CYYO01000001.1 516278 514287 -2 - 1992 Putative glycosyl hydrolase of unknown function (DUF1680) - none -
fig|6666666.230098.peg.418 CDS CYYO01000001.1 518867 516336 -2 - 2532 Alpha-N-arabinofuranosidase (EC 3.2.1.55) L-Arabinose utilization
fig|6666666.230098.peg.419 CDS CYYO01000001.1 521051 519105 -2 - 1947 Beta-xylosidase (EC 3.2.1.37) Xylose utilization
fig|6666666.230098.peg.420 CDS CYYO01000001.1 523022 521082 -2 - 1941 Hypothetical glycoside hydrolase, family 43, similar to arabinosidase L-Arabinose utilization
fig|6666666.230098.peg.421 CDS CYYO01000001.1 524260 523133 -1 - 1128 Rhamnogalacturonides degradation protein RhiN D-Galacturonate and D-Glucuronate Utilization
fig|6666666.230098.peg.422 CDS CYYO01000001.1 525609 524278 -3 - 1332 FIG00410552: hypothetical protein - none -
fig|6666666.230098.peg.423 CDS CYYO01000001.1 526855 525602 -1 - 1254 FIG00939120: hypothetical protein - none -
fig|6666666.230098.peg.424 CDS CYYO01000001.1 527148 527035 -3 - 114 hypothetical protein - none -
fig|6666666.230098.peg.425 CDS CYYO01000001.1 527361 528491 3 + 1131 Hypothetical radical SAM family enzyme, NOT coproporphyrinogen III oxidase, oxygen-independent Heat shock dnaK gene cluster extended
fig|6666666.230098.peg.426 CDS CYYO01000001.1 528512 529057 2 + 546 RNA polymerase ECF-type sigma factor - none -
fig|6666666.230098.peg.427 CDS CYYO01000001.1 529344 529862 3 + 519 FIG00418205: hypothetical protein - none -
fig|6666666.230098.peg.428 CDS CYYO01000001.1 529916 532603 2 + 2688 TonB-dependent receptor Ton and Tol transport systems
fig|6666666.230098.peg.429 CDS CYYO01000001.1 532631 533761 2 + 1131 FIG00402773: hypothetical protein - none -
fig|6666666.230098.peg.430 CDS CYYO01000001.1 534053 534406 2 + 354 FIG00402715: hypothetical protein - none -
fig|6666666.230098.peg.431 CDS CYYO01000001.1 535297 534545 -1 - 753 Two-component system response regulator - none -
fig|6666666.230098.peg.432 CDS CYYO01000001.1 535296 535433 3 + 138 hypothetical protein - none -
fig|6666666.230098.peg.433 CDS CYYO01000001.1 537352 535430 -1 - 1923 Sensor histidine kinase - none -
fig|6666666.230098.peg.434 CDS CYYO01000001.1 537806 539251 2 + 1446 serine/threonine protein kinase - none -
fig|6666666.230098.peg.435 CDS CYYO01000001.1 539238 540008 3 + 771 hypothetical protein - none -
fig|6666666.230098.peg.436 CDS CYYO01000001.1 540081 540905 3 + 825 FIG00416710: hypothetical protein - none -
fig|6666666.230098.peg.437 CDS CYYO01000001.1 540917 542191 2 + 1275 probable serine/threonine protein kinase, putative( EC:2.7.11.1 ) - none -
fig|6666666.230098.peg.438 CDS CYYO01000001.1 542208 543950 3 + 1743 hypothetical protein - none -
fig|6666666.230098.peg.439 CDS CYYO01000001.1 543959 545017 2 + 1059 Protein serine/threonine phosphatase PrpC, regulation of stationary phase Conserved gene cluster associated with Met-tRNA formyltransferase
fig|6666666.230098.peg.440 CDS CYYO01000001.1 545034 546512 3 + 1479 Serine/threonine protein kinase PrkC, regulator of stationary phase, short form Conserved gene cluster associated with Met-tRNA formyltransferase
fig|6666666.230098.peg.441 CDS CYYO01000001.1 547702 546572 -1 - 1131 putative DNA mismatch repair protein - none -
fig|6666666.230098.peg.442 CDS CYYO01000001.1 547830 549059 3 + 1230 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) CBSS-211586.1.peg.2832;
Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.230098.peg.443 CDS CYYO01000001.1 549089 549568 2 + 480 Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2) Isoprenoid Biosynthesis;
Isoprenoid Biosynthesis: Interconversions
fig|6666666.230098.peg.444 CDS CYYO01000001.1 550940 549585 -2 - 1356 Sodium:alanine symporter - none -
fig|6666666.230098.peg.445 CDS CYYO01000001.1 552428 551040 -2 - 1389 Phosphomannomutase (EC 5.4.2.8) / Phosphoglucosamine mutase (EC 5.4.2.10) Bacterial checkpoint-control-related cluster;
Mannose Metabolism;
Sialic Acid Metabolism;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.230098.peg.446 CDS CYYO01000001.1 553065 552454 -3 - 612 FIG00409304: hypothetical protein - none -
fig|6666666.230098.peg.447 CDS CYYO01000001.1 554206 553169 -1 - 1038 FIG146085: 3-to-5 oligoribonuclease A, Bacillus type - none -
fig|6666666.230098.peg.448 CDS CYYO01000001.1 556329 554293 -3 - 2037 DNA internalization-related competence protein ComEC/Rec2 - none -
fig|6666666.230098.peg.449 CDS CYYO01000001.1 557038 556388 -1 - 651 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) Conserved gene cluster associated with Met-tRNA formyltransferase;
Pentose phosphate pathway;
Riboflavin synthesis cluster
fig|6666666.230098.peg.450 CDS CYYO01000001.1 558275 557304 -2 - 972 Methionyl-tRNA formyltransferase (EC 2.1.2.9) Conserved gene cluster associated with Met-tRNA formyltransferase;
Translation initiation factors bacterial
fig|6666666.230098.peg.451 CDS CYYO01000001.1 558300 558419 3 + 120 hypothetical protein - none -
fig|6666666.230098.peg.452 CDS CYYO01000001.1 560239 558449 -1 - 1791 Chloride channel protein - none -
fig|6666666.230098.peg.453 CDS CYYO01000001.1 560811 560248 -3 - 564 TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA - none -
fig|6666666.230098.peg.454 CDS CYYO01000001.1 560892 561326 3 + 435 4-hydroxybenzoyl-CoA thioesterase (EC 3.1.2.23) - none -
fig|6666666.230098.peg.455 CDS CYYO01000001.1 561394 562566 1 + 1173 Xylose operon regulatory protein - none -
fig|6666666.230098.peg.456 CDS CYYO01000001.1 564016 562568 -1 - 1449 Putative phosphohydrolase, Icc family - none -
fig|6666666.230098.peg.457 CDS CYYO01000001.1 566233 564029 -1 - 2205 Beta-hexosaminidase (EC 3.2.1.52) - none -
fig|6666666.230098.peg.458 CDS CYYO01000001.1 567798 566347 -3 - 1452 FIG00408452: hypothetical protein - none -
fig|6666666.230098.peg.459 CDS CYYO01000001.1 569417 567813 -2 - 1605 Trehalase (EC 3.2.1.28) Trehalose Uptake and Utilization
fig|6666666.230098.peg.460 CDS CYYO01000001.1 570581 569439 -2 - 1143 Alkaline phosphatase (EC 3.1.3.1) Phosphate metabolism
fig|6666666.230098.peg.461 CDS CYYO01000001.1 571365 570595 -3 - 771 endonuclease/exonuclease/phosphatase family protein - none -
fig|6666666.230098.peg.462 CDS CYYO01000001.1 574407 571477 -3 - 2931 Alpha-1,2-mannosidase Mannose Metabolism
fig|6666666.230098.peg.463 CDS CYYO01000001.1 576253 574610 -1 - 1644 putative outer membrane protein probably involved in nutrient binding - none -
fig|6666666.230098.peg.464 CDS CYYO01000001.1 579452 576270 -2 - 3183 SusC, outer membrane protein involved in starch binding Cellulosome
fig|6666666.230098.peg.465 CDS CYYO01000001.1 580462 579626 -1 - 837 Hypothetical sugar kinase, ROK family - none -
fig|6666666.230098.peg.466 CDS CYYO01000001.1 581529 580534 -3 - 996 Phosphatidylinositol-specific phospholipase C (EC 4.6.1.13) Listeria Pathogenicity Island LIPI-1 extended
fig|6666666.230098.peg.467 CDS CYYO01000001.1 582450 581677 -3 - 774 UPF0246 protein YaaA - none -
fig|6666666.230098.peg.468 CDS CYYO01000001.1 582646 584361 1 + 1716 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) DNA Repair Base Excision;
DNA repair, bacterial RecFOR pathway
fig|6666666.230098.peg.469 CDS CYYO01000001.1 584572 586482 1 + 1911 ATP-dependent DNA helicase RecS (RecQ family) DNA repair, bacterial RecFOR pathway
fig|6666666.230098.peg.470 CDS CYYO01000001.1 586589 587548 2 + 960 TPR domain protein, putative component of TonB system Ton and Tol transport systems
fig|6666666.230098.peg.471 CDS CYYO01000001.1 587570 588319 2 + 750 Probable secreted protein - none -
fig|6666666.230098.peg.472 CDS CYYO01000001.1 588387 588506 3 + 120 hypothetical protein - none -
fig|6666666.230098.peg.473 CDS CYYO01000001.1 588613 589461 1 + 849 Prephenate dehydratase (EC 4.2.1.51) Chorismate Synthesis;
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.230098.peg.474 CDS CYYO01000001.1 589436 590617 2 + 1182 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aspartate aminotransferase (EC 2.6.1.1) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Phenylalanine and Tyrosine Branches from Chorismate;
Threonine and Homoserine Biosynthesis
fig|6666666.230098.peg.475 CDS CYYO01000001.1 590886 591899 3 + 1014 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I beta (EC 2.5.1.54) / Chorismate mutase I (EC 5.4.99.5) Chorismate Synthesis;
Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate);
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.230098.peg.476 CDS CYYO01000001.1 591917 592690 2 + 774 Prephenate and/or arogenate dehydrogenase (unknown specificity) (EC 1.3.1.12)(EC 1.3.1.43) Chorismate Synthesis;
Phenylalanine and Tyrosine Branches from Chorismate
fig|6666666.230098.peg.477 CDS CYYO01000001.1 593183 596287 2 + 3105 Two-component system sensor histidine kinase - none -
fig|6666666.230098.peg.478 CDS CYYO01000001.1 596372 598468 2 + 2097 DNA primase (EC 2.7.7.-) CBSS-349161.4.peg.2417;
Macromolecular synthesis operon
fig|6666666.230098.peg.479 CDS CYYO01000001.1 599078 598491 -2 - 588 GTP cyclohydrolase I (EC 3.5.4.16) type 1 Folate Biosynthesis;
Folate biosynthesis cluster;
Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.230098.peg.480 CDS CYYO01000001.1 599546 599088 -2 - 459 FIG00898413: hypothetical protein - none -
fig|6666666.230098.peg.481 CDS CYYO01000001.1 600403 599648 -1 - 756 Triosephosphate isomerase (EC 5.3.1.1) CBSS-331978.3.peg.2915;
Glycolysis and Gluconeogenesis
fig|6666666.230098.peg.482 CDS CYYO01000001.1 601739 600447 -2 - 1293 FIG00694335: hypothetical protein - none -
fig|6666666.230098.peg.483 CDS CYYO01000001.1 602271 601729 -3 - 543 FIG00651728: hypothetical protein - none -
fig|6666666.230098.peg.484 CDS CYYO01000001.1 602242 602430 1 + 189 FIG00411363: hypothetical protein - none -
fig|6666666.230098.peg.485 CDS CYYO01000001.1 603262 602381 -1 - 882 Peptidase, M23/M37 family - none -
fig|6666666.230098.peg.486 CDS CYYO01000001.1 603388 603263 -1 - 126 hypothetical protein - none -
fig|6666666.230098.peg.487 CDS CYYO01000001.1 605583 603520 -3 - 2064 ATP-dependent DNA helicase RecG (EC 3.6.1.-) - none -
fig|6666666.230098.peg.488 CDS CYYO01000001.1 606278 605604 -2 - 675 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC 2.7.7.60) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis;
Stationary phase repair cluster;
Teichoic and lipoteichoic acids biosynthesis
fig|6666666.230098.peg.489 CDS CYYO01000001.1 606867 606313 -3 - 555 DJ-1/YajL/PfpI superfamily, includes chaperone protein YajL (former ThiJ), parkinsonism-associated protein DJ-1, peptidases PfpI, Hsp31 - none -
fig|6666666.230098.peg.490 CDS CYYO01000001.1 607700 606882 -2 - 819 Ferric siderophore transport system, periplasmic binding protein TonB Hemin transport system;
Ton and Tol transport systems
fig|6666666.230098.peg.491 CDS CYYO01000001.1 608145 607735 -3 - 411 Biopolymer transport protein ExbD/TolR Ton and Tol transport systems
fig|6666666.230098.peg.492 CDS CYYO01000001.1 608896 608180 -1 - 717 Ferric siderophore transport system, biopolymer transport protein ExbB Ton and Tol transport systems
fig|6666666.230098.peg.493 CDS CYYO01000001.1 609579 608896 -3 - 684 Pyridoxine 5@1-phosphate synthase (EC 2.6.99.2) Pyridoxin (Vitamin B6) Biosynthesis
fig|6666666.230098.peg.494 CDS CYYO01000001.1 609687 610583 3 + 897 NAD kinase (EC 2.7.1.23) NAD and NADP cofactor biosynthesis global
fig|6666666.230098.peg.495 CDS CYYO01000001.1 611023 611604 1 + 582 RNA polymerase ECF-type sigma factor - none -
fig|6666666.230098.peg.496 CDS CYYO01000001.1 611709 612662 3 + 954 putative anti-sigma factor - none -
fig|6666666.230098.peg.497 CDS CYYO01000001.1 612927 615044 3 + 2118 FIG00406056: hypothetical protein - none -
fig|6666666.230098.peg.498 CDS CYYO01000001.1 615092 617155 2 + 2064 Alpha-galactosidase (EC 3.2.1.22) Galactosylceramide and Sulfatide metabolism;
Lactose and Galactose Uptake and Utilization
fig|6666666.230098.peg.499 CDS CYYO01000001.1 617169 618461 3 + 1293 FIG00404622: hypothetical protein - none -
fig|6666666.230098.peg.500 CDS CYYO01000001.1 618476 620470 2 + 1995 Alpha-glucosidase (EC 3.2.1.20) D-Galacturonate and D-Glucuronate Utilization;
Maltose and Maltodextrin Utilization
fig|6666666.230098.peg.501 CDS CYYO01000001.1 620528 622306 2 + 1779 Beta-galactosidase (EC 3.2.1.23) Galactosylceramide and Sulfatide metabolism;
Lactose and Galactose Uptake and Utilization;
Lactose utilization
fig|6666666.230098.peg.502 CDS CYYO01000001.1 622303 625023 1 + 2721 Beta-galactosidase (EC 3.2.1.23) Galactosylceramide and Sulfatide metabolism;
Lactose and Galactose Uptake and Utilization;
Lactose utilization
fig|6666666.230098.peg.503 CDS CYYO01000001.1 625035 625805 3 + 771 Beta-galactosidase (EC 3.2.1.23) Galactosylceramide and Sulfatide metabolism;
Lactose and Galactose Uptake and Utilization;
Lactose utilization
fig|6666666.230098.peg.504 CDS CYYO01000001.1 625912 628122 1 + 2211 Beta-glucosidase (EC 3.2.1.21) - none -
fig|6666666.230098.peg.505 CDS CYYO01000001.1 628740 628192 -3 - 549 RNA polymerase ECF-type sigma factor - none -
fig|6666666.230098.peg.506 CDS CYYO01000001.1 628888 629913 1 + 1026 putative anti-sigma factor - none -
fig|6666666.230098.peg.507 CDS CYYO01000001.1 630024 633263 3 + 3240 TonB family protein / TonB-dependent receptor Ton and Tol transport systems
fig|6666666.230098.peg.508 CDS CYYO01000001.1 633285 634901 3 + 1617 FIG00898178: hypothetical protein - none -
fig|6666666.230098.peg.509 CDS CYYO01000001.1 635026 637578 1 + 2553 Rhamnogalacturonides degradation protein RhiN D-Galacturonate and D-Glucuronate Utilization
fig|6666666.230098.peg.510 CDS CYYO01000001.1 640953 637660 -3 - 3294 putative Tricorn-like protease - none -
fig|6666666.230098.peg.511 CDS CYYO01000001.1 641953 641012 -1 - 942 Malate dehydrogenase (EC 1.1.1.37) Serine-glyoxylate cycle;
TCA Cycle
fig|6666666.230098.peg.512 CDS CYYO01000001.1 642184 643062 1 + 879 FIG00938717: hypothetical protein - none -
fig|6666666.230098.peg.513 CDS CYYO01000001.1 643172 644650 2 + 1479 Type I secretion system, outer membrane component LapE - none -
fig|6666666.230098.peg.514 CDS CYYO01000001.1 644696 645685 2 + 990 Membrane fusion component of tripartite multidrug resistance system Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria
fig|6666666.230098.peg.515 CDS CYYO01000001.1 645713 646891 2 + 1179 ABC-type multidrug transport system, permease component - none -
fig|6666666.230098.peg.516 CDS CYYO01000001.1 646891 648129 1 + 1239 ABC-type multidrug transport system, permease component - none -
fig|6666666.230098.peg.517 CDS CYYO01000001.1 649396 648350 -1 - 1047 Platelet-activating factor acetylhydrolase IB gamma subunit (EC 3.1.1.47) - none -
fig|6666666.230098.peg.518 CDS CYYO01000001.1 649636 651465 1 + 1830 Thiol:disulfide interchange protein tlpA - none -
fig|6666666.230098.peg.519 CDS CYYO01000001.1 653069 651531 -2 - 1539 Oxidoreductase, Gfo/Idh/MocA family - none -
fig|6666666.230098.peg.520 CDS CYYO01000001.1 653126 653281 2 + 156 FIG00416158: hypothetical protein - none -
fig|6666666.230098.peg.521 CDS CYYO01000001.1 653359 653721 1 + 363 Transcriptional regulator, MecI family - none -
fig|6666666.230098.peg.522 CDS CYYO01000001.1 653724 655544 3 + 1821 Regulatory sensor-transducer, BlaR1/MecR1 family / TonB-dependent receptor Ton and Tol transport systems
fig|6666666.230098.peg.523 CDS CYYO01000001.1 656056 655637 -1 - 420 Septum site-determining protein MinD Bacterial Cell Division;
Bacterial Cytoskeleton;
Bacterial cell division cluster;
Septum site-determining cluster Min
fig|6666666.230098.peg.524 CDS CYYO01000001.1 657598 656840 -1 - 759 tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33) RNA methylation;
tRNA modification Bacteria
fig|6666666.230098.peg.525 CDS CYYO01000001.1 658780 657761 -1 - 1020 Branched-chain amino acid aminotransferase (EC 2.6.1.42) Alanine biosynthesis;
Branched-Chain Amino Acid Biosynthesis;
Leucine Biosynthesis;
Pyruvate Alanine Serine Interconversions
fig|6666666.230098.peg.526 CDS CYYO01000001.1 659049 658834 -3 - 216 Exodeoxyribonuclease VII small subunit (EC 3.1.11.6) DNA repair, bacterial;
Purine salvage cluster
fig|6666666.230098.peg.527 CDS CYYO01000001.1 659460 659062 -3 - 399 FIG00412189: hypothetical protein - none -
fig|6666666.230098.peg.528 CDS CYYO01000001.1 660771 659539 -3 - 1233 Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) DNA repair, bacterial;
Purine salvage cluster
fig|6666666.230098.peg.529 CDS CYYO01000001.1 662143 660776 -1 - 1368 Subtilisin-like serine proteases - none -
fig|6666666.230098.peg.530 CDS CYYO01000001.1 663243 662140 -3 - 1104 tRNA-specific 2-thiouridylase MnmA RNA methylation
fig|6666666.230098.peg.531 CDS CYYO01000001.1 663453 663319 -3 - 135 hypothetical protein - none -
fig|6666666.230098.peg.532 CDS CYYO01000001.1 664763 663798 -2 - 966 Aminopeptidase C (EC 3.4.22.40) Protein degradation
fig|6666666.230098.peg.533 CDS CYYO01000001.1 665844 664936 -3 - 909 putative transcriptional regulator - none -
fig|6666666.230098.peg.534 CDS CYYO01000001.1 666204 666764 3 + 561 FIG00418142: hypothetical protein - none -
fig|6666666.230098.peg.535 CDS CYYO01000001.1 667671 666892 -3 - 780 FIG00410124: hypothetical protein - none -
fig|6666666.230098.peg.536 CDS CYYO01000001.1 667933 667712 -1 - 222 hypothetical protein - none -
fig|6666666.230098.peg.537 CDS CYYO01000002.1 253 936 1 + 684 hypothetical protein - none -
fig|6666666.230098.peg.538 CDS CYYO01000002.1 975 2453 3 + 1479 hypothetical protein - none -
fig|6666666.230098.peg.539 CDS CYYO01000002.1 2458 3423 1 + 966 hypothetical protein - none -
fig|6666666.230098.peg.540 CDS CYYO01000002.1 3436 3633 1 + 198 hypothetical protein - none -
fig|6666666.230098.peg.541 CDS CYYO01000002.1 4033 3836 -1 - 198 hypothetical protein - none -
fig|6666666.230098.peg.542 CDS CYYO01000002.1 4547 4747 2 + 201 hypothetical protein - none -
fig|6666666.230098.peg.543 CDS CYYO01000002.1 5009 5566 2 + 558 putative transcriptional regulator - none -
fig|6666666.230098.peg.544 CDS CYYO01000002.1 5563 5949 1 + 387 hypothetical protein - none -
fig|6666666.230098.peg.545 CDS CYYO01000002.1 5965 6306 1 + 342 hypothetical protein - none -
fig|6666666.230098.peg.546 CDS CYYO01000002.1 6362 9415 2 + 3054 DNA primase (EC 2.7.7.-) CBSS-349161.4.peg.2417;
Macromolecular synthesis operon
fig|6666666.230098.peg.547 CDS CYYO01000002.1 9451 9735 1 + 285 hypothetical protein - none -
fig|6666666.230098.peg.548 CDS CYYO01000002.1 9795 10124 3 + 330 hypothetical protein - none -
fig|6666666.230098.peg.549 CDS CYYO01000002.1 10302 10171 -3 - 132 hypothetical protein - none -
fig|6666666.230098.peg.550 CDS CYYO01000002.1 10725 11288 3 + 564 hypothetical protein - none -
fig|6666666.230098.peg.551 CDS CYYO01000002.1 11278 11751 1 + 474 hypothetical protein - none -
fig|6666666.230098.peg.552 CDS CYYO01000002.1 11876 12994 2 + 1119 Prophage Clp protease-like protein cAMP signaling in bacteria
fig|6666666.230098.peg.553 CDS CYYO01000002.1 13012 14247 1 + 1236 hypothetical protein - none -
fig|6666666.230098.peg.554 CDS CYYO01000002.1 14259 14861 3 + 603 hypothetical protein - none -
fig|6666666.230098.peg.555 CDS CYYO01000002.1 14994 15884 3 + 891 hypothetical protein - none -
fig|6666666.230098.peg.556 CDS CYYO01000002.1 15893 16510 2 + 618 hypothetical protein - none -
fig|6666666.230098.peg.557 CDS CYYO01000002.1 16485 16769 3 + 285 hypothetical protein - none -
fig|6666666.230098.peg.558 CDS CYYO01000002.1 16762 17364 1 + 603 hypothetical protein - none -
fig|6666666.230098.peg.559 CDS CYYO01000002.1 17375 17587 2 + 213 hypothetical protein - none -
fig|6666666.230098.peg.560 CDS CYYO01000002.1 17600 19327 2 + 1728 hypothetical protein - none -
fig|6666666.230098.peg.561 CDS CYYO01000002.1 20156 20716 2 + 561 putative ribose phosphate pyrophosphokinase - none -
fig|6666666.230098.peg.562 CDS CYYO01000002.1 20736 21326 3 + 591 DNA repair protein RadC Bacterial cell division cluster;
DNA repair, bacterial
fig|6666666.230098.peg.563 CDS CYYO01000002.1 21531 21767 3 + 237 hypothetical protein - none -
fig|6666666.230098.peg.564 CDS CYYO01000002.1 21801 22208 3 + 408 hypothetical protein - none -
fig|6666666.230098.peg.565 CDS CYYO01000002.1 22506 22799 3 + 294 hypothetical protein - none -
fig|6666666.230098.peg.566 CDS CYYO01000002.1 22886 23002 2 + 117 hypothetical protein - none -
fig|6666666.230098.peg.567 CDS CYYO01000002.1 22999 23244 1 + 246 hypothetical protein - none -
fig|6666666.230098.peg.568 CDS CYYO01000002.1 23241 23540 3 + 300 hypothetical protein - none -
fig|6666666.230098.peg.569 CDS CYYO01000002.1 23619 24215 3 + 597 hypothetical protein - none -
fig|6666666.230098.peg.570 CDS CYYO01000002.1 24220 24699 1 + 480 hypothetical protein - none -
fig|6666666.230098.peg.571 CDS CYYO01000002.1 24693 25787 3 + 1095 hypothetical protein - none -
fig|6666666.230098.peg.572 CDS CYYO01000002.1 25797 26075 3 + 279 hypothetical protein - none -
fig|6666666.230098.peg.573 CDS CYYO01000002.1 26075 27430 2 + 1356 hypothetical protein - none -
fig|6666666.230098.peg.574 CDS CYYO01000002.1 27430 28464 1 + 1035 hypothetical protein - none -
fig|6666666.230098.peg.575 CDS CYYO01000002.1 28461 29249 3 + 789 hypothetical protein - none -
fig|6666666.230098.peg.576 CDS CYYO01000002.1 29246 29722 2 + 477 hypothetical protein - none -
fig|6666666.230098.peg.577 CDS CYYO01000002.1 29729 31870 2 + 2142 hypothetical protein - none -
fig|6666666.230098.peg.578 CDS CYYO01000002.1 32091 35021 3 + 2931 hypothetical protein - none -
fig|6666666.230098.peg.579 CDS CYYO01000002.1 35046 35570 3 + 525 secretion activator protein, putative - none -
fig|6666666.230098.peg.580 CDS CYYO01000002.1 35662 36177 1 + 516 hypothetical protein - none -
fig|6666666.230098.peg.581 CDS CYYO01000002.1 36164 39664 2 + 3501 Phage tape measure protein Phage tail proteins
fig|6666666.230098.peg.582 CDS CYYO01000002.1 39661 41436 1 + 1776 hypothetical protein - none -
fig|6666666.230098.peg.583 CDS CYYO01000002.1 41542 41736 1 + 195 hypothetical protein - none -
fig|6666666.230098.peg.584 CDS CYYO01000002.1 41775 42203 3 + 429 hypothetical protein - none -
fig|6666666.230098.peg.585 CDS CYYO01000002.1 42448 43860 1 + 1413 hypothetical protein - none -
fig|6666666.230098.peg.586 CDS CYYO01000002.1 43868 44734 2 + 867 DNA-methyltransferase - none -
fig|6666666.230098.peg.587 CDS CYYO01000002.1 44880 44743 -3 - 138 hypothetical protein - none -
fig|6666666.230098.peg.588 CDS CYYO01000002.1 45128 45325 2 + 198 hypothetical protein - none -
fig|6666666.230098.peg.589 CDS CYYO01000002.1 45322 45684 1 + 363 hypothetical protein - none -
fig|6666666.230098.peg.590 CDS CYYO01000002.1 45677 45922 2 + 246 hypothetical protein - none -
fig|6666666.230098.peg.591 CDS CYYO01000002.1 45919 46218 1 + 300 hypothetical protein - none -
fig|6666666.230098.peg.592 CDS CYYO01000002.1 47500 46334 -1 - 1167 putative phage integrase - none -
fig|6666666.230098.peg.593 CDS CYYO01000002.1 48043 48747 1 + 705 Ribose 5-phosphate isomerase A (EC 5.3.1.6) D-ribose utilization;
Pentose phosphate pathway
fig|6666666.230098.peg.594 CDS CYYO01000002.1 50158 48722 -1 - 1437 Aminobenzoyl-glutamate transport protein - none -
fig|6666666.230098.peg.595 CDS CYYO01000002.1 50894 50166 -2 - 729 hypothetical protein - none -
fig|6666666.230098.peg.596 CDS CYYO01000002.1 55244 50898 -2 - 4347 putative two-component system sensor histidine kinase - none -
fig|6666666.230098.peg.597 CDS CYYO01000002.1 55390 56307 1 + 918 Ribose-phosphate pyrophosphokinase (EC 2.7.6.1) A Gammaproteobacteria Cluster Relating to Translation;
De Novo Purine Biosynthesis;
Pentose phosphate pathway
fig|6666666.230098.peg.598 CDS CYYO01000002.1 57563 56400 -2 - 1164 FIG01057005: hypothetical protein - none -
fig|6666666.230098.peg.599 CDS CYYO01000002.1 58927 57638 -1 - 1290 ZINC PROTEASE (EC 3.4.99.-) - none -
fig|6666666.230098.peg.600 CDS CYYO01000002.1 59701 58940 -1 - 762 3-deoxy-manno-octulosonate cytidylyltransferase (EC 2.7.7.38) - none -
fig|6666666.230098.peg.601 CDS CYYO01000002.1 60143 59778 -2 - 366 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) Folate Biosynthesis;
Folate biosynthesis cluster
fig|6666666.230098.peg.602 CDS CYYO01000002.1 62545 60215 -1 - 2331 Monofunctional biosynthetic peptidoglycan transglycosylase (EC 2.4.2.-) Peptidoglycan Biosynthesis
fig|6666666.230098.peg.603 CDS CYYO01000002.1 63157 64104 1 + 948 Aspartate carbamoyltransferase (EC 2.1.3.2) De Novo Pyrimidine Synthesis
fig|6666666.230098.peg.604 CDS CYYO01000002.1 64131 64595 3 + 465 Aspartate carbamoyltransferase regulatory chain (PyrI) De Novo Pyrimidine Synthesis
fig|6666666.230098.peg.605 CDS CYYO01000002.1 64592 65158 2 + 567 Flavoredoxin - none -
fig|6666666.230098.peg.606 CDS CYYO01000002.1 65203 65952 1 + 750 FIG00897396: hypothetical protein - none -
fig|6666666.230098.peg.607 CDS CYYO01000002.1 66055 67335 1 + 1281 Serine hydroxymethyltransferase (EC 2.1.2.1) 5-FCL-like protein;
Glycine Biosynthesis;
Glycine and Serine Utilization;
Serine-glyoxylate cycle;
Serine Biosynthesis
fig|6666666.230098.peg.608 CDS CYYO01000002.1 69125 67455 -2 - 1671 Formate--tetrahydrofolate ligase (EC 6.3.4.3) 5-FCL-like protein;
One-carbon metabolism by tetrahydropterines;
Serine-glyoxylate cycle
fig|6666666.230098.peg.609 CDS CYYO01000002.1 71394 69241 -3 - 2154 FIG00406183: hypothetical protein - none -
fig|6666666.230098.peg.610 CDS CYYO01000002.1 71596 73167 1 + 1572 Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-) Potassium homeostasis
fig|6666666.230098.peg.611 CDS CYYO01000002.1 73241 73963 2 + 723 Two-component system response regulator - none -
fig|6666666.230098.peg.612 CDS CYYO01000002.1 73985 74791 2 + 807 FIG00408616: hypothetical protein - none -
fig|6666666.230098.peg.613 CDS CYYO01000002.1 75015 75488 3 + 474 FIG00404985: hypothetical protein - none -
fig|6666666.230098.peg.614 CDS CYYO01000002.1 75514 76416 1 + 903 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.230098.peg.615 CDS CYYO01000002.1 78664 76448 -1 - 2217 DNA repair and recombination protein, putative helicase - none -
fig|6666666.230098.peg.616 CDS CYYO01000002.1 79722 78832 -3 - 891 ATP synthase gamma chain (EC 3.6.3.14) - none -
fig|6666666.230098.peg.617 CDS CYYO01000002.1 81430 79844 -1 - 1587 ATP synthase alpha chain (EC 3.6.3.14) - none -
fig|6666666.230098.peg.618 CDS CYYO01000002.1 82121 81561 -2 - 561 ATP synthase delta chain (EC 3.6.3.14) - none -
fig|6666666.230098.peg.619 CDS CYYO01000002.1 82639 82133 -1 - 507 ATP synthase F0 sector subunit b - none -
fig|6666666.230098.peg.620 CDS CYYO01000002.1 82992 82735 -3 - 258 ATP synthase F0 sector subunit c - none -
fig|6666666.230098.peg.621 CDS CYYO01000002.1 84119 83049 -2 - 1071 ATP synthase F0 sector subunit a - none -
fig|6666666.230098.peg.622 CDS CYYO01000002.1 84495 84103 -3 - 393 FIG048548: ATP synthase protein I2 - none -
fig|6666666.230098.peg.623 CDS CYYO01000002.1 84818 84564 -2 - 255 ATP synthase epsilon chain (EC 3.6.3.14) - none -
fig|6666666.230098.peg.624 CDS CYYO01000002.1 86367 84832 -3 - 1536 ATP synthase beta chain (EC 3.6.3.14) - none -
fig|6666666.230098.peg.625 CDS CYYO01000002.1 88012 86978 -1 - 1035 UDP-glucose 4-epimerase (EC 5.1.3.2) CBSS-296591.1.peg.2330;
Lactose and Galactose Uptake and Utilization;
N-linked Glycosylation in Bacteria;
Rhamnose containing glycans
fig|6666666.230098.peg.626 CDS CYYO01000002.1 88728 88144 -3 - 585 Electron transport complex protein RnfA Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.230098.peg.627 CDS CYYO01000002.1 89379 88816 -3 - 564 Electron transport complex protein RnfE Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.230098.peg.628 CDS CYYO01000002.1 90082 89417 -1 - 666 Electron transport complex protein RnfG Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.230098.peg.629 CDS CYYO01000002.1 91071 90079 -3 - 993 Electron transport complex protein RnfD Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.230098.peg.630 CDS CYYO01000002.1 92415 91078 -3 - 1338 Electron transport complex protein RnfC Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.230098.peg.631 CDS CYYO01000002.1 93378 92476 -3 - 903 Electron transport complex protein RnfB Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.230098.peg.632 CDS CYYO01000002.1 93688 93416 -1 - 273 hypothetical protein - none -
fig|6666666.230098.peg.633 CDS CYYO01000002.1 95505 94066 -3 - 1440 FIG00897178: hypothetical protein - none -
fig|6666666.230098.peg.634 CDS CYYO01000002.1 95776 97395 1 + 1620 CTP synthase (EC 6.3.4.2) CTP synthase (EC 6.3.4.2) cluster
fig|6666666.230098.peg.635 CDS CYYO01000002.1 97427 99280 2 + 1854 Inner membrane protein translocase component YidC, long form CTP synthase (EC 6.3.4.2) cluster;
Cell Division Subsystem including YidCD;
RNA modification cluster
fig|6666666.230098.peg.636 CDS CYYO01000002.1 99383 100714 2 + 1332 BexA, multidrug efflux pump - none -
fig|6666666.230098.peg.637 CDS CYYO01000002.1 100776 102875 3 + 2100 Prolyl oligopeptidase family protein - none -
fig|6666666.230098.peg.638 CDS CYYO01000002.1 103257 103141 -3 - 117 hypothetical protein - none -
fig|6666666.230098.peg.639 CDS CYYO01000002.1 103361 104500 2 + 1140 hypothetical protein - none -
fig|6666666.230098.peg.640 CDS CYYO01000002.1 105135 104515 -3 - 621 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) Teichoic and lipoteichoic acids biosynthesis
fig|6666666.230098.peg.641 CDS CYYO01000002.1 106495 105515 -1 - 981 UDP-glucose 4-epimerase (EC 5.1.3.2) CBSS-296591.1.peg.2330;
Lactose and Galactose Uptake and Utilization;
N-linked Glycosylation in Bacteria;
Rhamnose containing glycans
fig|6666666.230098.peg.642 CDS CYYO01000002.1 106825 106505 -1 - 321 hypothetical protein - none -
fig|6666666.230098.peg.643 CDS CYYO01000002.1 107013 106822 -3 - 192 hypothetical protein - none -
fig|6666666.230098.peg.644 CDS CYYO01000002.1 108319 107087 -1 - 1233 Glycosyl transferase, group 1 CBSS-258594.1.peg.3339
fig|6666666.230098.peg.645 CDS CYYO01000002.1 109510 108329 -1 - 1182 UDP-N-acetylglucosamine 2-epimerase (EC 5.1.3.14) CMP-N-acetylneuraminate Biosynthesis;
Sialic Acid Metabolism
fig|6666666.230098.peg.646 CDS CYYO01000002.1 110684 109536 -2 - 1149 Capsular polysaccharide synthesis enzyme Cap5F - none -
fig|6666666.230098.peg.647 CDS CYYO01000002.1 110976 110725 -3 - 252 hypothetical protein - none -
fig|6666666.230098.peg.648 CDS CYYO01000002.1 111302 111126 -2 - 177 hypothetical protein - none -
fig|6666666.230098.peg.649 CDS CYYO01000002.1 112521 111448 -3 - 1074 UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-) CBSS-296591.1.peg.2330;
N-linked Glycosylation in Bacteria
fig|6666666.230098.peg.650 CDS CYYO01000002.1 113682 112540 -3 - 1143 putitive LPS biosynthesis protein - none -
fig|6666666.230098.peg.651 CDS CYYO01000002.1 114914 113691 -2 - 1224 Glycosyltransferase (EC 2.4.1.-) - none -
fig|6666666.230098.peg.652 CDS CYYO01000002.1 115994 114930 -2 - 1065 capsular polysaccharide biosynthesis protein Rhamnose containing glycans
fig|6666666.230098.peg.653 CDS CYYO01000002.1 116979 115999 -3 - 981 Glycosyltransferase CBSS-258594.1.peg.3339
fig|6666666.230098.peg.654 CDS CYYO01000002.1 118340 117027 -2 - 1314 UDP-glucose dehydrogenase (EC 1.1.1.22) - none -
fig|6666666.230098.peg.655 CDS CYYO01000002.1 119332 118430 -1 - 903 Putative glycosyltransferase CBSS-296591.1.peg.2330
fig|6666666.230098.peg.656 CDS CYYO01000002.1 120771 119350 -3 - 1422 Lipopolysaccharide biosynthesis protein WzxC - none -
fig|6666666.230098.peg.657 CDS CYYO01000002.1 121688 121146 -2 - 543 Transcription antitermination protein UpdY Transcription factors bacterial
fig|6666666.230098.peg.658 CDS CYYO01000002.1 122432 122755 2 + 324 hypothetical protein - none -
fig|6666666.230098.peg.659 CDS CYYO01000002.1 122878 125007 1 + 2130 putative helicase - none -
fig|6666666.230098.peg.660 CDS CYYO01000002.1 125397 125137 -3 - 261 FIG00407477: hypothetical protein - none -
fig|6666666.230098.peg.661 CDS CYYO01000002.1 125626 125420 -1 - 207 hypothetical protein - none -
fig|6666666.230098.peg.662 CDS CYYO01000002.1 125675 126184 2 + 510 FIG00403032: hypothetical protein - none -
fig|6666666.230098.peg.663 CDS CYYO01000002.1 127467 126337 -3 - 1131 FIG00898796: hypothetical protein - none -
fig|6666666.230098.peg.664 CDS CYYO01000002.1 127426 127572 1 + 147 hypothetical protein - none -
fig|6666666.230098.peg.665 CDS CYYO01000002.1 127879 127697 -1 - 183 hypothetical protein - none -
fig|6666666.230098.peg.666 CDS CYYO01000002.1 128055 128288 3 + 234 hypothetical protein - none -
fig|6666666.230098.peg.667 CDS CYYO01000002.1 128279 128407 2 + 129 hypothetical protein - none -
fig|6666666.230098.peg.668 CDS CYYO01000002.1 128498 128614 2 + 117 hypothetical protein - none -
fig|6666666.230098.peg.669 CDS CYYO01000002.1 130333 128783 -1 - 1551 Prolyl-tRNA synthetase (EC 6.1.1.15), archaeal/eukaryal type tRNA aminoacylation, Pro
fig|6666666.230098.peg.670 CDS CYYO01000002.1 130567 130821 1 + 255 hypothetical protein - none -
fig|6666666.230098.peg.671 CDS CYYO01000002.1 130818 131087 3 + 270 YafQ toxin protein Toxin-antitoxin replicon stabilization systems
fig|6666666.230098.peg.672 CDS CYYO01000002.1 131350 131871 1 + 522 Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) Cobalamin synthesis;
Coenzyme B12 biosynthesis
fig|6666666.230098.peg.673 CDS CYYO01000002.1 131902 132939 1 + 1038 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) Cobalamin synthesis;
Coenzyme B12 biosynthesis
fig|6666666.230098.peg.674 CDS CYYO01000002.1 132968 133684 2 + 717 Cobalamin synthase (EC 2.7.8.26) Cobalamin synthesis;
Coenzyme B12 biosynthesis
fig|6666666.230098.peg.675 CDS CYYO01000002.1 133700 134239 2 + 540 Alpha-ribazole-5@1-phosphate phosphatase (EC 3.1.3.73) Cobalamin synthesis;
Coenzyme B12 biosynthesis;
Phosphoglycerate mutase protein family
fig|6666666.230098.peg.676 CDS CYYO01000002.1 136181 134220 -2 - 1962 FIG00412932: hypothetical protein - none -
fig|6666666.230098.peg.677 CDS CYYO01000002.1 138058 136178 -1 - 1881 Two-component system sensor histidine kinase - none -
fig|6666666.230098.peg.678 CDS CYYO01000002.1 139136 138168 -2 - 969 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) Cobalamin synthesis;
Coenzyme B12 biosynthesis
fig|6666666.230098.peg.679 CDS CYYO01000002.1 140174 139140 -2 - 1035 L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) Cobalamin synthesis;
Coenzyme B12 biosynthesis
fig|6666666.230098.peg.680 CDS CYYO01000002.1 141693 140167 -3 - 1527 Cobyric acid synthase (EC 6.3.5.10) Cobalamin synthesis;
Coenzyme B12 biosynthesis
fig|6666666.230098.peg.681 CDS CYYO01000002.1 141862 143289 1 + 1428 Outer membrane protein assembly factor YaeT precursor Llipid A biosynthesis cluster
fig|6666666.230098.peg.682 CDS CYYO01000002.1 143302 144297 1 + 996 FIG00896745: hypothetical protein - none -
fig|6666666.230098.peg.683 CDS CYYO01000002.1 144336 146684 3 + 2349 ABC-type multidrug transport system, permease component - none -
fig|6666666.230098.peg.684 CDS CYYO01000002.1 146925 148109 3 + 1185 Nicotinate phosphoribosyltransferase (EC 2.4.2.11) NAD and NADP cofactor biosynthesis global;
Redox-dependent regulation of nucleus processes
fig|6666666.230098.peg.685 CDS CYYO01000002.1 148710 148141 -3 - 570 ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17) - none -
fig|6666666.230098.peg.686 CDS CYYO01000002.1 149238 148714 -3 - 525 hypothetical protein - none -
fig|6666666.230098.peg.687 CDS CYYO01000002.1 149510 149307 -2 - 204 FIG00409255: hypothetical protein - none -
fig|6666666.230098.peg.688 CDS CYYO01000002.1 151366 149648 -1 - 1719 FIG00414938: hypothetical protein - none -
fig|6666666.230098.peg.689 CDS CYYO01000002.1 152826 151417 -3 - 1410 Cobyrinic acid A,C-diamide synthase Cobalamin synthesis;
Coenzyme B12 biosynthesis
fig|6666666.230098.peg.690 CDS CYYO01000002.1 152921 154351 2 + 1431 COG3178: Predicted phosphotransferase related to Ser/Thr protein kinases - none -
fig|6666666.230098.peg.691 CDS CYYO01000002.1 154386 155117 3 + 732 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.230098.peg.692 CDS CYYO01000002.1 156898 155213 -1 - 1686 Predicted cobalt transporter in Bacteroides_Porphyromonas Coenzyme B12 biosynthesis
fig|6666666.230098.peg.693 CDS CYYO01000002.1 158558 157026 -2 - 1533 Acetyl-coenzyme A carboxyl transferase alpha chain (EC 6.4.1.2) / Acetyl-coenzyme A carboxyl transferase beta chain (EC 6.4.1.2); Propionyl-CoA carboxylase beta chain (EC 6.4.1.3) Colicin V and Bacteriocin Production Cluster;
Fatty Acid Biosynthesis FASII;
Fatty Acid Biosynthesis FASII;
Serine-glyoxylate cycle
fig|6666666.230098.peg.694 CDS CYYO01000002.1 159128 158613 -2 - 516 Biotin carboxyl carrier protein of acetyl-CoA carboxylase; Biotin carboxyl carrier protein Fatty Acid Biosynthesis FASII;
Fatty Acid Biosynthesis FASII
fig|6666666.230098.peg.695 CDS CYYO01000002.1 160671 159160 -3 - 1512 Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14) Fatty Acid Biosynthesis FASII
fig|6666666.230098.peg.696 CDS CYYO01000002.1 161100 161294 3 + 195 hypothetical protein - none -
fig|6666666.230098.peg.697 CDS CYYO01000002.1 161384 163744 2 + 2361 TonB-dependent receptor Ton and Tol transport systems
fig|6666666.230098.peg.698 CDS CYYO01000002.1 163766 165088 2 + 1323 FIG00897953: hypothetical protein - none -
fig|6666666.230098.peg.699 CDS CYYO01000002.1 165106 166053 1 + 948 Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3) Cobalamin synthesis;
Coenzyme B12 biosynthesis
fig|6666666.230098.peg.700 CDS CYYO01000002.1 166123 167637 1 + 1515 Optional hypothetical component of the B12 transporter BtuN Coenzyme B12 biosynthesis
fig|6666666.230098.peg.701 CDS CYYO01000002.1 167653 171564 1 + 3912 CobN/magnesium chelatase family protein - none -
fig|6666666.230098.peg.702 CDS CYYO01000002.1 171581 172138 2 + 558 FIG00402742: hypothetical protein - none -
fig|6666666.230098.peg.703 CDS CYYO01000002.1 172172 172777 2 + 606 hypothetical transporter PduT for various metalloporphyrins - none -
fig|6666666.230098.peg.704 CDS CYYO01000002.1 172850 173131 2 + 282 FIG00935708: hypothetical protein - none -
fig|6666666.230098.peg.705 CDS CYYO01000002.1 173247 175316 3 + 2070 TonB-dependent receptor Ton and Tol transport systems
fig|6666666.230098.peg.706 CDS CYYO01000002.1 175351 176175 1 + 825 Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3) Cobalamin synthesis;
Coenzyme B12 biosynthesis
fig|6666666.230098.peg.707 CDS CYYO01000002.1 176385 177284 3 + 900 Transcriptional regulator, AraC family - none -
fig|6666666.230098.peg.708 CDS CYYO01000002.1 177378 178793 3 + 1416 Cobalt-precorrin-3b C17-methyltransferase / Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) Cobalamin synthesis;
Cobalamin synthesis;
Coenzyme B12 biosynthesis;
Coenzyme B12 biosynthesis
fig|6666666.230098.peg.709 CDS CYYO01000002.1 178920 180158 3 + 1239 Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) Coenzyme B12 biosynthesis;
Coenzyme B12 biosynthesis
fig|6666666.230098.peg.710 CDS CYYO01000002.1 180170 182023 2 + 1854 Cobalamin biosynthesis protein CbiG / Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) Cobalamin synthesis;
Cobalamin synthesis;
Coenzyme B12 biosynthesis;
Coenzyme B12 biosynthesis
fig|6666666.230098.peg.711 CDS CYYO01000002.1 182056 183951 1 + 1896 Cobalt-precorrin-6x reductase (EC 1.3.1.54) / Cobalt-precorrin-6 synthase, anaerobic Cobalamin synthesis;
Cobalamin synthesis;
Coenzyme B12 biosynthesis;
Coenzyme B12 biosynthesis
fig|6666666.230098.peg.712 CDS CYYO01000002.1 183948 184622 3 + 675 hypothetical protein - none -
fig|6666666.230098.peg.713 CDS CYYO01000002.1 184690 185775 1 + 1086 Choloylglycine hydrolase (EC 3.5.1.24) Bile hydrolysis
fig|6666666.230098.peg.714 CDS CYYO01000002.1 187096 185789 -1 - 1308 Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps Multidrug Resistance Efflux Pumps;
Riboflavin, FMN and FAD metabolism in plants
fig|6666666.230098.peg.715 CDS CYYO01000002.1 188184 187165 -3 - 1020 Ferric enterobactin transport ATP-binding protein FepC (TC 3.A.1.14.2) - none -
fig|6666666.230098.peg.716 CDS CYYO01000002.1 189190 188177 -1 - 1014 Vitamin B12 ABC transporter, permease component BtuC Coenzyme B12 biosynthesis
fig|6666666.230098.peg.717 CDS CYYO01000002.1 190383 189214 -3 - 1170 Vitamin B12 ABC transporter, B12-binding component BtuF Coenzyme B12 biosynthesis
fig|6666666.230098.peg.718 CDS CYYO01000002.1 191841 190486 -3 - 1356 Putative Dihydrolipoamide dehydrogenase (EC 1.8.1.4); Mercuric ion reductase (EC 1.16.1.1); PF00070 family, FAD-dependent NAD(P)-disulphide oxidoreductase Mercuric reductase;
Mercuric reductase;
Mercury resistance operon;
TCA Cycle
fig|6666666.230098.peg.719 CDS CYYO01000002.1 192436 191846 -1 - 591 membrane protein ykgB - none -
fig|6666666.230098.peg.720 CDS CYYO01000002.1 193384 192527 -1 - 858 Transcriptional regulator, AraC family - none -
fig|6666666.230098.peg.721 CDS CYYO01000002.1 193508 194215 2 + 708 Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) Cobalamin synthesis;
Coenzyme B12 biosynthesis
fig|6666666.230098.peg.722 CDS CYYO01000002.1 194307 194702 3 + 396 FIG00413813: hypothetical protein - none -
fig|6666666.230098.peg.723 CDS CYYO01000002.1 194752 196791 1 + 2040 Oligopeptide transporter, OPT family - none -
fig|6666666.230098.peg.724 CDS CYYO01000002.1 196810 197697 1 + 888 Xylanase Xylose utilization
fig|6666666.230098.peg.725 CDS CYYO01000002.1 197706 200927 3 + 3222 Beta-galactosidase (EC 3.2.1.23) Galactosylceramide and Sulfatide metabolism;
Lactose and Galactose Uptake and Utilization;
Lactose utilization
fig|6666666.230098.peg.726 CDS CYYO01000002.1 201025 201813 1 + 789 probable lipoprotein YPO2292 - none -
fig|6666666.230098.peg.727 CDS CYYO01000002.1 203445 201892 -3 - 1554 FIG00899379: hypothetical protein - none -
fig|6666666.230098.peg.728 CDS CYYO01000002.1 204533 203583 -2 - 951 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) Teichoic and lipoteichoic acids biosynthesis
fig|6666666.230098.peg.729 CDS CYYO01000002.1 205543 204557 -1 - 987 UDP-glucose 4-epimerase (EC 5.1.3.2) CBSS-296591.1.peg.2330;
Lactose and Galactose Uptake and Utilization;
N-linked Glycosylation in Bacteria;
Rhamnose containing glycans
fig|6666666.230098.peg.730 CDS CYYO01000002.1 205577 205726 2 + 150 hypothetical protein - none -
fig|6666666.230098.peg.731 CDS CYYO01000002.1 206602 205856 -1 - 747 Glycosyl transferase, family 2 - none -
fig|6666666.230098.peg.732 CDS CYYO01000002.1 206570 206734 2 + 165 hypothetical protein - none -
fig|6666666.230098.peg.733 CDS CYYO01000002.1 208037 206913 -2 - 1125 Glycosyl transferase, group 1 CBSS-258594.1.peg.3339
fig|6666666.230098.peg.734 CDS CYYO01000002.1 209232 208162 -3 - 1071 Glycosyltransferase (EC 2.4.1.-) - none -
fig|6666666.230098.peg.735 CDS CYYO01000002.1 210443 209283 -2 - 1161 Succinoglycan biosynthesis protein - none -
fig|6666666.230098.peg.736 CDS CYYO01000002.1 211675 210467 -1 - 1209 hypothetical protein - none -
fig|6666666.230098.peg.737 CDS CYYO01000002.1 212574 211672 -3 - 903 glycosyltransferase - none -
fig|6666666.230098.peg.738 CDS CYYO01000002.1 213496 212555 -1 - 942 UDP-glucose 4-epimerase (EC 5.1.3.2) CBSS-296591.1.peg.2330;
Lactose and Galactose Uptake and Utilization;
N-linked Glycosylation in Bacteria;
Rhamnose containing glycans
fig|6666666.230098.peg.739 CDS CYYO01000002.1 214598 213504 -2 - 1095 glycosyl transferase, group 1 family protein - none -
fig|6666666.230098.peg.740 CDS CYYO01000002.1 216296 214752 -2 - 1545 Membrane protein involved in the export of O-antigen, teichoic acid lipoteichoic acids - none -
fig|6666666.230098.peg.741 CDS CYYO01000002.1 217533 216289 -3 - 1245 hypothetical protein - none -
fig|6666666.230098.peg.742 CDS CYYO01000002.1 218443 217535 -1 - 909 UDP-glucose 4-epimerase (EC 5.1.3.2) CBSS-296591.1.peg.2330;
Lactose and Galactose Uptake and Utilization;
N-linked Glycosylation in Bacteria;
Rhamnose containing glycans
fig|6666666.230098.peg.743 CDS CYYO01000002.1 218848 218459 -1 - 390 dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) Capsular heptose biosynthesis;
Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.230098.peg.744 CDS CYYO01000002.1 219989 218889 -2 - 1101 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) CBSS-296591.1.peg.2330;
Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.230098.peg.745 CDS CYYO01000002.1 220874 220008 -2 - 867 Glucose-1-phosphate cytidylyltransferase (EC 2.7.7.33) dTDP-rhamnose synthesis
fig|6666666.230098.peg.746 CDS CYYO01000002.1 222922 221129 -1 - 1794 Mobile element protein - none -
fig|6666666.230098.peg.747 CDS CYYO01000002.1 223330 222995 -1 - 336 hypothetical protein - none -
fig|6666666.230098.peg.748 CDS CYYO01000002.1 223498 223695 1 + 198 hypothetical protein - none -
fig|6666666.230098.peg.749 CDS CYYO01000002.1 224879 223761 -2 - 1119 COG1691: NCAIR mutase (PurE)-related proteins - none -
fig|6666666.230098.peg.750 CDS CYYO01000002.1 226373 224895 -2 - 1479 Probable poly(beta-D-mannuronate) O-acetylase (EC 2.3.1.-) - none -
fig|6666666.230098.peg.751 CDS CYYO01000002.1 226634 226398 -2 - 237 Acyl carrier protein Fatty Acid Biosynthesis FASII;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.230098.peg.752 CDS CYYO01000002.1 228362 226704 -2 - 1659 putative modular polyketide synthase - none -
fig|6666666.230098.peg.753 CDS CYYO01000002.1 228754 228620 -1 - 135 hypothetical protein - none -
fig|6666666.230098.peg.754 CDS CYYO01000002.1 228923 229543 2 + 621 FIG00407803: hypothetical protein - none -
fig|6666666.230098.peg.755 CDS CYYO01000002.1 229780 231555 1 + 1776 FIG00896590: hypothetical protein - none -
fig|6666666.230098.peg.756 CDS CYYO01000002.1 231898 231680 -1 - 219 FIG00417360: hypothetical protein - none -
fig|6666666.230098.peg.757 CDS CYYO01000002.1 232108 232593 1 + 486 FIG00415943: hypothetical protein - none -
fig|6666666.230098.peg.758 CDS CYYO01000002.1 232772 232617 -2 - 156 hypothetical protein - none -
fig|6666666.230098.peg.759 CDS CYYO01000002.1 232794 233156 3 + 363 N-acetylmuramoyl-L-alanine amidase - none -
fig|6666666.230098.peg.760 CDS CYYO01000002.1 233337 233170 -3 - 168 hypothetical protein - none -
fig|6666666.230098.peg.761 CDS CYYO01000002.1 233575 233411 -1 - 165 hypothetical protein - none -
fig|6666666.230098.peg.762 CDS CYYO01000002.1 234120 233806 -3 - 315 hypothetical protein - none -
fig|6666666.230098.peg.763 CDS CYYO01000002.1 235210 234209 -1 - 1002 N-acetylneuraminate synthase (EC 2.5.1.56) CMP-N-acetylneuraminate Biosynthesis;
Sialic Acid Metabolism
fig|6666666.230098.peg.764 CDS CYYO01000002.1 236665 235223 -1 - 1443 N-Acetylneuraminate cytidylyltransferase (EC 2.7.7.43) CMP-N-acetylneuraminate Biosynthesis;
Sialic Acid Metabolism
fig|6666666.230098.peg.765 CDS CYYO01000002.1 237024 236713 -3 - 312 hypothetical protein - none -
fig|6666666.230098.peg.766 CDS CYYO01000002.1 237339 237088 -3 - 252 Uncharacterized protein MJ1379 - none -
fig|6666666.230098.peg.767 CDS CYYO01000002.1 238762 237455 -1 - 1308 Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8) CBSS-196164.1.peg.461
fig|6666666.230098.peg.768 CDS CYYO01000002.1 239535 238774 -3 - 762 Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8) CBSS-196164.1.peg.461
fig|6666666.230098.peg.769 CDS CYYO01000002.1 240389 239526 -2 - 864 Putative oxidoreductase - none -
fig|6666666.230098.peg.770 CDS CYYO01000002.1 241549 240386 -1 - 1164 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase (EC 2.6.1.-) - none -
fig|6666666.230098.peg.771 CDS CYYO01000002.1 242547 241546 -3 - 1002 UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-) CBSS-296591.1.peg.2330;
N-linked Glycosylation in Bacteria
fig|6666666.230098.peg.772 CDS CYYO01000002.1 243072 242584 -3 - 489 UpdZ protein - none -
fig|6666666.230098.peg.773 CDS CYYO01000002.1 243644 243108 -2 - 537 Transcription antitermination protein UpdY Transcription factors bacterial
fig|6666666.230098.peg.774 CDS CYYO01000002.1 245296 244187 -1 - 1110 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) Ammonia assimilation;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.230098.peg.775 CDS CYYO01000002.1 245705 245379 -2 - 327 Transcriptional regulator, PadR family CBSS-1352.1.peg.856
fig|6666666.230098.peg.776 CDS CYYO01000002.1 247118 245928 -2 - 1191 [FeFe]-hydrogenase maturation GTPase HydF - none -
fig|6666666.230098.peg.777 CDS CYYO01000002.1 248548 247130 -1 - 1419 2-iminoacetate synthase (ThiH) (EC 4.1.99.19) - none -
fig|6666666.230098.peg.778 CDS CYYO01000002.1 249659 248601 -2 - 1059 [FeFe]-hydrogenase maturation protein HydE - none -
fig|6666666.230098.peg.779 CDS CYYO01000002.1 251136 249676 -3 - 1461 Periplasmic [Fe] hydrogenase (EC 1.12.7.2) - none -
fig|6666666.230098.peg.780 CDS CYYO01000002.1 251244 251741 3 + 498 GCN5-related N-acetyltransferase - none -
fig|6666666.230098.peg.781 CDS CYYO01000002.1 253351 251831 -1 - 1521 Di-/tripeptide transporter Proton-dependent Peptide Transporters
fig|6666666.230098.peg.782 CDS CYYO01000002.1 253951 253469 -1 - 483 Cys-tRNA(Pro) deacylase YbaK tRNA aminoacylation, Pro
fig|6666666.230098.peg.783 CDS CYYO01000002.1 256800 253966 -3 - 2835 Excinuclease ABC subunit A DNA repair, UvrABC system
fig|6666666.230098.peg.784 CDS CYYO01000002.1 256990 258780 1 + 1791 LysM-repeat proteins and domains - none -
fig|6666666.230098.peg.785 CDS CYYO01000002.1 258861 259562 3 + 702 FIG00897535: hypothetical protein - none -
fig|6666666.230098.peg.786 CDS CYYO01000002.1 260193 259732 -3 - 462 FIG00897728: hypothetical protein - none -
fig|6666666.230098.peg.787 CDS CYYO01000002.1 260528 260193 -2 - 336 FIG00936941: hypothetical protein - none -
fig|6666666.230098.peg.788 CDS CYYO01000002.1 261371 260553 -2 - 819 lipoprotein protein, putative - none -
fig|6666666.230098.peg.789 CDS CYYO01000002.1 261986 261561 -2 - 426 Amino acid-binding ACT Aromatic amino acid interconversions with aryl acids
fig|6666666.230098.peg.790 CDS CYYO01000002.1 263303 262032 -2 - 1272 Phenylacetate-coenzyme A ligase (EC 6.2.1.30) Aromatic amino acid interconversions with aryl acids
fig|6666666.230098.peg.791 CDS CYYO01000002.1 263447 265507 2 + 2061 Excinuclease ABC subunit B DNA repair, UvrABC system
fig|6666666.230098.peg.792 CDS CYYO01000002.1 265595 266650 2 + 1056 Choloylglycine hydrolase (EC 3.5.1.24) Bile hydrolysis
fig|6666666.230098.peg.793 CDS CYYO01000002.1 266783 270082 2 + 3300 Helicase - none -
fig|6666666.230098.peg.794 CDS CYYO01000002.1 270126 273017 3 + 2892 FIG00403299: hypothetical protein - none -
fig|6666666.230098.peg.795 CDS CYYO01000002.1 274260 273139 -3 - 1122 Two-component system sensor histidine kinase - none -
fig|6666666.230098.peg.796 CDS CYYO01000002.1 275243 274308 -2 - 936 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) CBSS-296591.1.peg.2330;
Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.230098.peg.797 CDS CYYO01000002.1 275942 275409 -2 - 534 Co-activator of prophage gene expression IbrB IbrA and IbrB: co-activators of prophage gene expression
fig|6666666.230098.peg.798 CDS CYYO01000002.1 277228 275939 -1 - 1290 Co-activator of prophage gene expression IbrA IbrA and IbrB: co-activators of prophage gene expression
fig|6666666.230098.peg.799 CDS CYYO01000002.1 277626 277231 -3 - 396 FIG00406930: hypothetical protein - none -
fig|6666666.230098.peg.800 CDS CYYO01000002.1 277819 278370 1 + 552 Chromate transport protein - none -
fig|6666666.230098.peg.801 CDS CYYO01000002.1 278367 278891 3 + 525 Chromate transport protein - none -
fig|6666666.230098.peg.802 CDS CYYO01000002.1 279926 278883 -2 - 1044 Fucose permease - none -
fig|6666666.230098.peg.803 CDS CYYO01000002.1 280104 280250 3 + 147 hypothetical protein - none -
fig|6666666.230098.peg.804 CDS CYYO01000002.1 280254 281138 3 + 885 transcriptional regulator - none -
fig|6666666.230098.peg.805 CDS CYYO01000002.1 281233 281652 1 + 420 FIG00407325: hypothetical protein - none -
fig|6666666.230098.peg.806 CDS CYYO01000002.1 282798 281629 -3 - 1170 Aspartate aminotransferase (EC 2.6.1.1) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.230098.peg.807 CDS CYYO01000002.1 284235 282802 -3 - 1434 Multidrug and toxin extrusion (MATE) family efflux pump YdhE/NorM, homolog Multidrug Resistance Efflux Pumps
fig|6666666.230098.peg.808 CDS CYYO01000002.1 285121 284255 -1 - 867 FIG00898920: hypothetical protein - none -
fig|6666666.230098.peg.809 CDS CYYO01000002.1 285707 285144 -2 - 564 Maltose O-acetyltransferase (EC 2.3.1.79) Maltose and Maltodextrin Utilization
fig|6666666.230098.peg.810 CDS CYYO01000002.1 286355 285729 -2 - 627 Flavodoxin Flavodoxin
fig|6666666.230098.peg.811 CDS CYYO01000002.1 287264 286449 -2 - 816 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) - none -
fig|6666666.230098.peg.812 CDS CYYO01000002.1 288271 287276 -1 - 996 Flavoredoxin - none -
fig|6666666.230098.peg.813 CDS CYYO01000002.1 288795 290111 3 + 1317 Aspartate aminotransferase (EC 2.6.1.1) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.230098.peg.814 CDS CYYO01000002.1 291720 290140 -3 - 1581 FIG00897230: hypothetical protein - none -
fig|6666666.230098.peg.815 CDS CYYO01000002.1 294848 291741 -2 - 3108 TonB-dependent receptor Ton and Tol transport systems
fig|6666666.230098.peg.816 CDS CYYO01000002.1 295136 295582 2 + 447 Transcriptional regulator, ArsR family - none -
fig|6666666.230098.peg.817 CDS CYYO01000002.1 296111 295575 -2 - 537 Spermidine N1-acetyltransferase (EC 2.3.1.57) Polyamine Metabolism
fig|6666666.230098.peg.818 CDS CYYO01000002.1 296583 296125 -3 - 459 FIG01255190: hypothetical protein - none -
fig|6666666.230098.peg.819 CDS CYYO01000002.1 297249 296632 -3 - 618 Recombination protein RecR DNA processing cluster;
DNA repair, bacterial RecFOR pathway
fig|6666666.230098.peg.820 CDS CYYO01000002.1 297292 297444 1 + 153 hypothetical protein - none -
fig|6666666.230098.peg.821 CDS CYYO01000002.1 297425 298033 2 + 609 GTP-binding protein EngB Universal GTPases
fig|6666666.230098.peg.822 CDS CYYO01000002.1 298045 298641 1 + 597 FIG00413602: hypothetical protein - none -
fig|6666666.230098.peg.823 CDS CYYO01000002.1 300581 299436 -2 - 1146 Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-) Polyamine Metabolism
fig|6666666.230098.peg.824 CDS CYYO01000002.1 303137 300783 -2 - 2355 ATP-dependent DNA helicase UvrD/PcrA DNA repair, bacterial UvrD and related helicases
fig|6666666.230098.peg.825 CDS CYYO01000002.1 303306 303902 3 + 597 Superoxide dismutase [Fe] (EC 1.15.1.1) Oxidative stress;
Protection from Reactive Oxygen Species
fig|6666666.230098.peg.826 CDS CYYO01000002.1 304069 304677 1 + 609 Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) 5-FCL-like protein;
Thiamin biosynthesis
fig|6666666.230098.peg.827 CDS CYYO01000002.1 305581 304697 -1 - 885 two-component system sensor histidine kinase - none -
fig|6666666.230098.peg.828 CDS CYYO01000002.1 308469 305749 -3 - 2721 Pyruvate,phosphate dikinase (EC 2.7.9.1) Glycolysis and Gluconeogenesis;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.230098.peg.829 CDS CYYO01000002.1 308673 310094 3 + 1422 RNA methyltransferase, TrmA family - none -
fig|6666666.230098.peg.830 CDS CYYO01000002.1 310155 311066 3 + 912 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) RNA pseudouridine syntheses;
Ribosome biogenesis bacterial
fig|6666666.230098.peg.831 CDS CYYO01000002.1 311545 311132 -1 - 414 hypothetical protein - none -
fig|6666666.230098.peg.832 CDS CYYO01000002.1 311990 311556 -2 - 435 FIG00403019: hypothetical protein - none -
fig|6666666.230098.peg.833 CDS CYYO01000002.1 313190 312048 -2 - 1143 Protein AraJ precursor L-Arabinose utilization
fig|6666666.230098.peg.834 CDS CYYO01000002.1 314176 313295 -1 - 882 aldose epimerase family protein - none -
fig|6666666.230098.peg.835 CDS CYYO01000002.1 314510 314181 -2 - 330 FIG00408424: hypothetical protein - none -
fig|6666666.230098.peg.836 CDS CYYO01000002.1 315686 314604 -2 - 1083 FIG00415761: hypothetical protein - none -
fig|6666666.230098.peg.837 CDS CYYO01000002.1 315957 316586 3 + 630 hypothetical protein - none -
fig|6666666.230098.peg.838 CDS CYYO01000002.1 316614 317825 3 + 1212 Exonuclease SbcD DNA repair, bacterial;
Rad50-Mre11 DNA repair cluster
fig|6666666.230098.peg.839 CDS CYYO01000002.1 317841 321263 3 + 3423 Exonuclease SbcC DNA repair, bacterial;
Rad50-Mre11 DNA repair cluster
fig|6666666.230098.peg.840 CDS CYYO01000002.1 321365 322219 2 + 855 Methionine aminopeptidase (EC 3.4.11.18) CBSS-312309.3.peg.1965;
Translation termination factors bacterial
fig|6666666.230098.peg.841 CDS CYYO01000002.1 322241 323473 2 + 1233 DNA recombination protein RmuC DNA repair, bacterial
fig|6666666.230098.peg.842 CDS CYYO01000002.1 325011 323737 -3 - 1275 Na(+)-translocating NADH-quinone reductase subunit F (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.230098.peg.843 CDS CYYO01000002.1 325655 325029 -2 - 627 Na(+)-translocating NADH-quinone reductase subunit E (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.230098.peg.844 CDS CYYO01000002.1 326407 325769 -1 - 639 Na(+)-translocating NADH-quinone reductase subunit D (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.230098.peg.845 CDS CYYO01000002.1 327101 326412 -2 - 690 Na(+)-translocating NADH-quinone reductase subunit C (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.230098.peg.846 CDS CYYO01000002.1 328285 327116 -1 - 1170 Na(+)-translocating NADH-quinone reductase subunit B (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.230098.peg.847 CDS CYYO01000002.1 329688 328339 -3 - 1350 Na(+)-translocating NADH-quinone reductase subunit A (EC 1.6.5.-) Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
fig|6666666.230098.peg.848 CDS CYYO01000002.1 331309 329909 -1 - 1401 Aminopeptidase C (EC 3.4.22.40) Protein degradation
fig|6666666.230098.peg.849 CDS CYYO01000002.1 331319 331435 2 + 117 hypothetical protein - none -
fig|6666666.230098.peg.850 CDS CYYO01000002.1 331469 332671 2 + 1203 Outer membrane protein/protective antigen OMA87 - none -
fig|6666666.230098.peg.851 CDS CYYO01000002.1 332906 332787 -2 - 120 hypothetical protein - none -
fig|6666666.230098.peg.852 CDS CYYO01000002.1 332919 334109 3 + 1191 Glycosyl transferase, group 2 family protein - none -
fig|6666666.230098.peg.853 CDS CYYO01000002.1 334126 336816 1 + 2691 Two-component system sensor histidine kinase - none -
fig|6666666.230098.peg.854 CDS CYYO01000002.1 338624 336840 -2 - 1785 Pyruvate carboxylase (EC 6.4.1.1) / Biotin carboxyl carrier protein Fatty Acid Biosynthesis FASII
fig|6666666.230098.peg.855 CDS CYYO01000002.1 339263 338760 -2 - 504 RNA polymerase ECF-type sigma factor - none -
fig|6666666.230098.peg.856 CDS CYYO01000002.1 339535 342438 1 + 2904 FIG00403256: hypothetical protein - none -
fig|6666666.230098.peg.857 CDS CYYO01000002.1 343259 342627 -2 - 633 FIG00405553: hypothetical protein - none -
fig|6666666.230098.peg.858 CDS CYYO01000002.1 343388 344482 2 + 1095 UDP-N-acetylglucosamine 2-epimerase (EC 5.1.3.14) CMP-N-acetylneuraminate Biosynthesis;
Sialic Acid Metabolism
fig|6666666.230098.peg.859 CDS CYYO01000002.1 344782 347367 1 + 2586 FIG00937290: hypothetical protein - none -
fig|6666666.230098.peg.860 CDS CYYO01000002.1 347446 348651 1 + 1206 ATPase, AAA family - none -
fig|6666666.230098.peg.861 CDS CYYO01000002.1 348742 349698 1 + 957 glycerate dehydrogenase - none -
fig|6666666.230098.peg.862 CDS CYYO01000002.1 349799 350884 2 + 1086 FIG00415799: hypothetical protein - none -
fig|6666666.230098.peg.863 CDS CYYO01000002.1 354385 350984 -1 - 3402 OmpA-related protein - none -
fig|6666666.230098.peg.864 CDS CYYO01000002.1 356773 354494 -1 - 2280 Two-component system sensor histidine kinase - none -
fig|6666666.230098.peg.865 CDS CYYO01000002.1 358284 356965 -3 - 1320 Na+/H+ antiporter NhaA type NhaA, NhaD and Sodium-dependent phosphate transporters
fig|6666666.230098.peg.866 CDS CYYO01000002.1 360105 358324 -3 - 1782 Translation elongation factor LepA Heat shock dnaK gene cluster extended;
Translation elongation factors bacterial;
Universal GTPases
fig|6666666.230098.peg.867 CDS CYYO01000002.1 360430 360230 -1 - 201 FIG00404895: hypothetical protein - none -
fig|6666666.230098.peg.868 CDS CYYO01000002.1 361051 360581 -1 - 471 FIG00406685: hypothetical protein - none -
fig|6666666.230098.peg.869 CDS CYYO01000002.1 361815 361051 -3 - 765 Exodeoxyribonuclease III (EC 3.1.11.2) DNA repair, bacterial
fig|6666666.230098.peg.870 CDS CYYO01000002.1 363113 361848 -2 - 1266 Manganese transport protein MntH - none -
fig|6666666.230098.peg.871 CDS CYYO01000002.1 363485 363240 -2 - 246 FIG00409633: hypothetical protein - none -
fig|6666666.230098.peg.872 CDS CYYO01000002.1 364222 363485 -1 - 738 FIG000859: hypothetical protein YebC Riboflavin, FMN and FAD metabolism in plants;
RuvABC plus a hypothetical
fig|6666666.230098.peg.873 CDS CYYO01000002.1 366730 364268 -1 - 2463 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) tRNA aminoacylation, Phe
fig|6666666.230098.peg.874 CDS CYYO01000002.1 366833 367000 2 + 168 hypothetical protein - none -
fig|6666666.230098.peg.875 CDS CYYO01000002.1 367511 367011 -2 - 501 putative non-specific DNA-binding protein - none -
fig|6666666.230098.peg.876 CDS CYYO01000002.1 368659 367718 -1 - 942 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) Teichoic and lipoteichoic acids biosynthesis
fig|6666666.230098.peg.877 CDS CYYO01000002.1 369664 368768 -1 - 897 UDP-glucose 4-epimerase (EC 5.1.3.2) CBSS-296591.1.peg.2330;
Lactose and Galactose Uptake and Utilization;
N-linked Glycosylation in Bacteria;
Rhamnose containing glycans
fig|6666666.230098.peg.878 CDS CYYO01000002.1 370552 369698 -1 - 855 glycosyl transferase, family 2 - none -
fig|6666666.230098.peg.879 CDS CYYO01000002.1 371675 370569 -2 - 1107 putative glucose transferase - none -
fig|6666666.230098.peg.880 CDS CYYO01000002.1 372866 371679 -2 - 1188 O-antigen modification protein - none -
fig|6666666.230098.peg.881 CDS CYYO01000002.1 373751 372870 -2 - 882 Glycosyltransferase CBSS-258594.1.peg.3339
fig|6666666.230098.peg.882 CDS CYYO01000002.1 374859 373744 -3 - 1116 UDP-galactopyranose mutase (EC 5.4.99.9) LOS core oligosaccharide biosynthesis
fig|6666666.230098.peg.883 CDS CYYO01000002.1 375857 374856 -2 - 1002 putative glycosyltransferase - possibly involved in cell wall localization and side chain formation of rhamnose-glucose polysaccharide Rhamnose containing glycans
fig|6666666.230098.peg.884 CDS CYYO01000002.1 377709 375844 -3 - 1866 Methionine synthase I, cobalamin-binding domain - none -
fig|6666666.230098.peg.885 CDS CYYO01000002.1 378794 377706 -2 - 1089 D-octopine dehydrogenase (EC 1.5.1.11) - none -
fig|6666666.230098.peg.886 CDS CYYO01000002.1 380002 378794 -1 - 1209 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain protein - none -
fig|6666666.230098.peg.887 CDS CYYO01000002.1 381108 379999 -3 - 1110 Nucleotide sugar transaminase - none -
fig|6666666.230098.peg.888 CDS CYYO01000002.1 382579 381134 -1 - 1446 Lipopolysaccharide biosynthesis protein WzxC - none -
fig|6666666.230098.peg.889 CDS CYYO01000002.1 383338 382904 -1 - 435 UpdZ protein - none -
fig|6666666.230098.peg.890 CDS CYYO01000002.1 383978 383424 -2 - 555 Transcription antitermination protein UpdY Transcription factors bacterial
fig|6666666.230098.peg.891 CDS CYYO01000002.1 384781 384906 1 + 126 hypothetical protein - none -
fig|6666666.230098.peg.892 CDS CYYO01000002.1 385124 385471 2 + 348 FIG00413928: hypothetical protein - none -
fig|6666666.230098.peg.893 CDS CYYO01000002.1 385512 386351 3 + 840 DnaD domain protein - none -
fig|6666666.230098.peg.894 CDS CYYO01000002.1 387075 386479 -3 - 597 Acyl carrier protein phosphodiesterase (EC 3.1.4.14) Fatty Acid Biosynthesis FASII
fig|6666666.230098.peg.895 CDS CYYO01000002.1 387731 387072 -2 - 660 Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase Lipoic acid metabolism;
Lipoic acid synthesis cluster
fig|6666666.230098.peg.896 CDS CYYO01000002.1 387881 390727 2 + 2847 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins Ton and Tol transport systems
fig|6666666.230098.peg.897 CDS CYYO01000002.1 390820 391653 1 + 834 Transcriptional regulator, AraC family - none -
fig|6666666.230098.peg.898 CDS CYYO01000002.1 393359 391665 -2 - 1695 Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4) Copper Transport System;
Copper homeostasis
fig|6666666.230098.peg.899 CDS CYYO01000002.1 393720 393430 -3 - 291 Possible exported heavy-metal binding protein - none -
fig|6666666.230098.peg.900 CDS CYYO01000002.1 395986 393770 -1 - 2217 TonB-dependent outer membrane receptor - none -
fig|6666666.230098.peg.901 CDS CYYO01000002.1 396325 396495 1 + 171 hypothetical protein - none -
fig|6666666.230098.peg.902 CDS CYYO01000002.1 396607 397473 1 + 867 FIG00936355: hypothetical protein - none -
fig|6666666.230098.peg.903 CDS CYYO01000002.1 397511 398131 2 + 621 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB Cell Division Subsystem including YidCD;
RNA methylation;
RNA modification and chromosome partitioning cluster
fig|6666666.230098.peg.904 CDS CYYO01000002.1 398147 398785 2 + 639 Similar to Hydroxyacylglutathione hydrolase, but in an organism lacking glutathione biosynthesis Glutathione: Non-redox reactions
fig|6666666.230098.peg.905 CDS CYYO01000002.1 398817 401666 3 + 2850 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) Glycine and Serine Utilization
fig|6666666.230098.peg.906 CDS CYYO01000002.1 401645 402328 2 + 684 COG1272: Predicted membrane protein hemolysin III homolog - none -
fig|6666666.230098.peg.907 CDS CYYO01000002.1 402446 403270 2 + 825 ABC transporter, ATP-binding protein - none -
fig|6666666.230098.peg.908 CDS CYYO01000002.1 403294 404061 1 + 768 FIG00417121: hypothetical protein - none -
fig|6666666.230098.peg.909 CDS CYYO01000002.1 404065 404433 1 + 369 Transcriptional regulator, GntR family - none -
fig|6666666.230098.peg.910 CDS CYYO01000002.1 404664 406994 3 + 2331 FIG00413484: hypothetical protein - none -
fig|6666666.230098.peg.911 CDS CYYO01000002.1 407669 407106 -2 - 564 Oxygen-insensitive NADPH nitroreductase (EC 1.-.-.-) - none -
fig|6666666.230098.peg.912 CDS CYYO01000002.1 408858 407734 -3 - 1125 Type II restriction enzyme HpaII (EC 3.1.21.4) - none -
fig|6666666.230098.peg.913 CDS CYYO01000002.1 409630 409016 -1 - 615 FIG000605: protein co-occurring with transport systems (COG1739) Transport system clustering with HemG
fig|6666666.230098.peg.914 CDS CYYO01000002.1 409744 410895 1 + 1152 Glycerate kinase (EC 2.7.1.31) Glycerate metabolism;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Glycine and Serine Utilization;
Serine-glyoxylate cycle
fig|6666666.230098.peg.915 CDS CYYO01000002.1 412232 410892 -2 - 1341 Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps Multidrug Resistance Efflux Pumps;
Riboflavin, FMN and FAD metabolism in plants
fig|6666666.230098.peg.916 CDS CYYO01000002.1 412524 412342 -3 - 183 FIG00406415: hypothetical protein - none -
fig|6666666.230098.peg.917 CDS CYYO01000002.1 412990 412589 -1 - 402 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase;
Potassium homeostasis
fig|6666666.230098.peg.918 CDS CYYO01000002.1 413530 413009 -1 - 522 Iron-sulfur flavoprotein - none -
fig|6666666.230098.peg.919 CDS CYYO01000002.1 414962 413715 -2 - 1248 FIG008208: hypothetical protein - none -
fig|6666666.230098.peg.920 CDS CYYO01000002.1 415986 415066 -3 - 921 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) Glycine and Serine Utilization;
Pyridoxin (Vitamin B6) Biosynthesis;
Serine Biosynthesis
fig|6666666.230098.peg.921 CDS CYYO01000002.1 417188 416097 -2 - 1092 Phosphoserine aminotransferase (EC 2.6.1.52) Glycine and Serine Utilization;
Pyridoxin (Vitamin B6) Biosynthesis;
Serine Biosynthesis
fig|6666666.230098.peg.922 CDS CYYO01000002.1 418776 417439 -3 - 1338 ATP-dependent RNA helicase - none -
fig|6666666.230098.peg.923 CDS CYYO01000002.1 420213 418924 -3 - 1290 putative endonuclease precursor - none -
fig|6666666.230098.peg.924 CDS CYYO01000002.1 422803 420311 -1 - 2493 hypothetical protein - none -
fig|6666666.230098.peg.925 CDS CYYO01000002.1 425536 422816 -1 - 2721 Thiamin-regulated outer membrane receptor Omr1 Thiamin biosynthesis
fig|6666666.230098.peg.926 CDS CYYO01000002.1 427485 425788 -3 - 1698 ABC transporter ATP-binding protein - none -
fig|6666666.230098.peg.927 CDS CYYO01000002.1 430244 428040 -2 - 2205 Alpha-galactosidase (EC 3.2.1.22) Galactosylceramide and Sulfatide metabolism;
Lactose and Galactose Uptake and Utilization
fig|6666666.230098.peg.928 CDS CYYO01000002.1 431109 430345 -3 - 765 Short chain dehydrogenase - none -
fig|6666666.230098.peg.929 CDS CYYO01000002.1 431320 432726 1 + 1407 Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) Polyamine Metabolism
fig|6666666.230098.peg.930 CDS CYYO01000002.1 432716 433516 2 + 801 Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) Polyamine Metabolism
fig|6666666.230098.peg.931 CDS CYYO01000002.1 433543 434304 1 + 762 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) Polyamine Metabolism
fig|6666666.230098.peg.932 CDS CYYO01000002.1 434346 435686 3 + 1341 ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1) Polyamine Metabolism
fig|6666666.230098.peg.933 CDS CYYO01000002.1 435719 437047 2 + 1329 Na+ driven multidrug efflux pump - none -
fig|6666666.230098.peg.934 CDS CYYO01000002.1 437148 437822 3 + 675 OmpA family outer membrane protein - none -
fig|6666666.230098.peg.935 CDS CYYO01000002.1 437921 438607 2 + 687 Monofunctional biosynthetic peptidoglycan transglycosylase (EC 2.4.2.-) Peptidoglycan Biosynthesis
fig|6666666.230098.peg.936 CDS CYYO01000002.1 439831 438683 -1 - 1149 Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.230098.peg.937 CDS CYYO01000002.1 441426 439852 -3 - 1575 Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases
fig|6666666.230098.peg.938 CDS CYYO01000002.1 441863 441543 -2 - 321 FIG00896375: hypothetical protein - none -
fig|6666666.230098.peg.939 CDS CYYO01000002.1 441975 443375 3 + 1401 RND efflux system, outer membrane lipoprotein CmeC Multidrug Resistance Efflux Pumps
fig|6666666.230098.peg.940 CDS CYYO01000002.1 443388 444617 3 + 1230 Macrolide-specific efflux protein MacA Multidrug Resistance Efflux Pumps
fig|6666666.230098.peg.941 CDS CYYO01000002.1 444633 445382 3 + 750 ABC transporter ATP-binding protein - none -
fig|6666666.230098.peg.942 CDS CYYO01000002.1 445436 446656 2 + 1221 ABC transporter, permease protein - none -
fig|6666666.230098.peg.943 CDS CYYO01000002.1 446872 446693 -1 - 180 hypothetical protein - none -
fig|6666666.230098.peg.944 CDS CYYO01000002.1 446902 447969 1 + 1068 putative two-component system sensor protein, no kinase domain - none -
fig|6666666.230098.peg.945 CDS CYYO01000002.1 447966 448667 3 + 702 Two-component system response regulator - none -
fig|6666666.230098.peg.946 CDS CYYO01000002.1 449080 449766 1 + 687 Ferric siderophore transport system, periplasmic binding protein TonB Hemin transport system;
Ton and Tol transport systems
fig|6666666.230098.peg.947 CDS CYYO01000002.1 450083 450727 2 + 645 Pyridoxamine 5@1-phosphate oxidase (EC 1.4.3.5) Pyridoxin (Vitamin B6) Biosynthesis
fig|6666666.230098.peg.948 CDS CYYO01000002.1 450872 451870 2 + 999 FIG00896814: hypothetical protein - none -
fig|6666666.230098.peg.949 CDS CYYO01000002.1 452579 451863 -2 - 717 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type Entner-Doudoroff Pathway;
Pentose phosphate pathway
fig|6666666.230098.peg.950 CDS CYYO01000002.1 454075 452576 -1 - 1500 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) Entner-Doudoroff Pathway;
Pentose phosphate pathway
fig|6666666.230098.peg.951 CDS CYYO01000002.1 455571 454090 -3 - 1482 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) Pentose phosphate pathway
fig|6666666.230098.peg.952 CDS CYYO01000002.1 455694 456854 3 + 1161 Na+/H+-dicarboxylate symporter - none -
fig|6666666.230098.peg.953 CDS CYYO01000002.1 456929 458005 2 + 1077 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) Capsular heptose biosynthesis
fig|6666666.230098.peg.954 CDS CYYO01000002.1 458032 459108 1 + 1077 GDP-L-fucose synthetase (EC 1.1.1.271) Capsular heptose biosynthesis
fig|6666666.230098.peg.955 CDS CYYO01000002.1 459129 461543 3 + 2415 putative ferric aerobactin receptor - none -
fig|6666666.230098.peg.956 CDS CYYO01000002.1 461644 463302 1 + 1659 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) Biotin biosynthesis
fig|6666666.230098.peg.957 CDS CYYO01000002.1 463358 464905 2 + 1548 N-acetylgalactosamine-6-sulfatase - none -
fig|6666666.230098.peg.958 CDS CYYO01000002.1 464915 466201 2 + 1287 FIG00405852: hypothetical protein - none -
fig|6666666.230098.peg.959 CDS CYYO01000002.1 468191 466203 -2 - 1989 Fructose-1,6-bisphosphatase, Bacillus type (EC 3.1.3.11) Glycolysis and Gluconeogenesis
fig|6666666.230098.peg.960 CDS CYYO01000002.1 469916 468246 -2 - 1671 putative membrane protein - none -
fig|6666666.230098.peg.961 CDS CYYO01000002.1 471023 470010 -2 - 1014 Probable low-affinity inorganic phosphate transporter Phosphate metabolism
fig|6666666.230098.peg.962 CDS CYYO01000002.1 471683 471036 -2 - 648 Phosphate transport regulator (distant homolog of PhoU) Phosphate metabolism
fig|6666666.230098.peg.963 CDS CYYO01000002.1 472359 471712 -3 - 648 DedA protein Colicin V and Bacteriocin Production Cluster;
DedA family of inner membrane proteins;
Uptake of selenate and selenite
fig|6666666.230098.peg.964 CDS CYYO01000002.1 472796 472455 -2 - 342 hypothetical protein - none -
fig|6666666.230098.peg.965 CDS CYYO01000002.1 473449 474798 1 + 1350 Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps Multidrug Resistance Efflux Pumps;
Riboflavin, FMN and FAD metabolism in plants
fig|6666666.230098.peg.966 CDS CYYO01000002.1 474886 475470 1 + 585 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases CBSS-258594.1.peg.3339;
cAMP signaling in bacteria
fig|6666666.230098.peg.967 CDS CYYO01000002.1 475615 476541 1 + 927 Tyrosine type site-specific recombinase, Mpi regulator - none -
fig|6666666.230098.peg.968 CDS CYYO01000002.1 477507 478448 3 + 942 Glycosyltransferase CBSS-258594.1.peg.3339
fig|6666666.230098.peg.969 CDS CYYO01000002.1 478487 479314 2 + 828 Polysaccharide export outer membrane protein - none -
fig|6666666.230098.peg.970 CDS CYYO01000002.1 479331 481724 3 + 2394 Tyrosine-protein kinase Wzc (EC 2.7.10.2) CBSS-258594.1.peg.3339
fig|6666666.230098.peg.971 CDS CYYO01000002.1 481903 482442 1 + 540 Capsular polysaccharide transcription antitermination protein, UpxY family - none -
fig|6666666.230098.peg.972 CDS CYYO01000002.1 482881 482432 -1 - 450 N-acetylmuramoyl-L-alanine amidase - none -
fig|6666666.230098.peg.973 CDS CYYO01000002.1 482999 482886 -2 - 114 hypothetical protein - none -
fig|6666666.230098.peg.974 CDS CYYO01000002.1 483630 483091 -3 - 540 FIG00413911: hypothetical protein - none -
fig|6666666.230098.peg.975 CDS CYYO01000002.1 483915 484166 3 + 252 hypothetical protein - none -
fig|6666666.230098.peg.976 CDS CYYO01000002.1 486268 484172 -1 - 2097 FIG00414498: hypothetical protein - none -
fig|6666666.230098.peg.977 CDS CYYO01000002.1 486409 486564 1 + 156 hypothetical protein - none -
fig|6666666.230098.peg.978 CDS CYYO01000002.1 487000 488337 1 + 1338 UDP-glucose dehydrogenase (EC 1.1.1.22) - none -
fig|6666666.230098.peg.979 CDS CYYO01000002.1 488383 489627 1 + 1245 hypothetical protein - none -
fig|6666666.230098.peg.980 CDS CYYO01000002.1 489611 491161 2 + 1551 putative flippase - none -
fig|6666666.230098.peg.981 CDS CYYO01000002.1 491386 492369 1 + 984 hypothetical protein - none -
fig|6666666.230098.peg.982 CDS CYYO01000002.1 492496 493452 1 + 957 hypothetical protein - none -
fig|6666666.230098.peg.983 CDS CYYO01000002.1 493460 494053 2 + 594 FIG01201438: hypothetical protein - none -
fig|6666666.230098.peg.984 CDS CYYO01000002.1 494050 495021 1 + 972 membrane protein, putative - none -
fig|6666666.230098.peg.985 CDS CYYO01000002.1 495034 496182 1 + 1149 NAD-dependent epimerase/dehydratase family protein CBSS-296591.1.peg.2330
fig|6666666.230098.peg.986 CDS CYYO01000002.1 496179 496982 3 + 804 unknown - none -
fig|6666666.230098.peg.987 CDS CYYO01000002.1 497008 497907 1 + 900 hypothetical protein - none -
fig|6666666.230098.peg.988 CDS CYYO01000002.1 497904 498953 3 + 1050 O-acetyl transferase - none -
fig|6666666.230098.peg.989 CDS CYYO01000002.1 499237 499542 1 + 306 Serine acetyltransferase (EC 2.3.1.30) Cysteine Biosynthesis;
Methionine Biosynthesis
fig|6666666.230098.peg.990 CDS CYYO01000002.1 499592 500308 2 + 717 Putative mannosyltransferase involved in polysaccharide biosynthesis - none -
fig|6666666.230098.peg.991 CDS CYYO01000002.1 500348 501349 2 + 1002 Beta-1,3-glucosyltransferase LOS core oligosaccharide biosynthesis
fig|6666666.230098.peg.992 CDS CYYO01000002.1 501355 502449 1 + 1095 Dolichol-phosphate mannosyltransferase (EC 2.4.1.83) in lipid-linked oligosaccharide synthesis cluster - none -
fig|6666666.230098.peg.993 CDS CYYO01000002.1 502549 503532 1 + 984 Capsular polysaccharide biosynthesis protein - none -
fig|6666666.230098.peg.994 CDS CYYO01000002.1 503582 504628 2 + 1047 Glycosyltransferase (EC 2.4.1.-) - none -
fig|6666666.230098.peg.995 CDS CYYO01000002.1 504665 505765 2 + 1101 GDP-L-fucose synthetase (EC 1.1.1.271) Capsular heptose biosynthesis
fig|6666666.230098.peg.996 CDS CYYO01000002.1 505868 506638 2 + 771 N-acetylmannosaminyltransferase (EC 2.4.1.187) Teichoic and lipoteichoic acids biosynthesis
fig|6666666.230098.peg.997 CDS CYYO01000002.1 506671 507780 1 + 1110 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) Capsular heptose biosynthesis
fig|6666666.230098.peg.998 CDS CYYO01000002.1 507831 508484 3 + 654 FIG00405599: hypothetical protein - none -
fig|6666666.230098.peg.999 CDS CYYO01000002.1 508526 509773 2 + 1248 FIG00416648: hypothetical protein - none -
fig|6666666.230098.peg.1000 CDS CYYO01000002.1 509815 511119 1 + 1305 FIG00410646: hypothetical protein - none -
fig|6666666.230098.peg.1001 CDS CYYO01000002.1 511159 511581 1 + 423 FIG00936914: hypothetical protein - none -
fig|6666666.230098.peg.1002 CDS CYYO01000002.1 512530 511769 -1 - 762 Creatinine amidohydrolase (EC 3.5.2.10) Creatine and Creatinine Degradation
fig|6666666.230098.peg.1003 CDS CYYO01000002.1 513471 512593 -3 - 879 Transcriptional regulator, AraC family - none -
fig|6666666.230098.peg.1004 CDS CYYO01000002.1 515870 513546 -2 - 2325 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins Ton and Tol transport systems
fig|6666666.230098.peg.1005 CDS CYYO01000002.1 518151 516406 -3 - 1746 5@1-nucleotidase (EC 3.1.3.5); 2@1,3@1-cyclic-nucleotide 2@1-phosphodiesterase (EC 3.1.4.16); Putative UDP-sugar hydrolase (EC 3.6.1.45) CBSS-226186.1.peg.4416;
Purine conversions;
Purine conversions
fig|6666666.230098.peg.1006 CDS CYYO01000002.1 520025 518178 -2 - 1848 Two-component system sensor histidine kinase - none -
fig|6666666.230098.peg.1007 CDS CYYO01000002.1 520704 520081 -3 - 624 FIG00406763: hypothetical protein - none -
fig|6666666.230098.peg.1008 CDS CYYO01000002.1 520777 522912 1 + 2136 Transcription accessory protein (S1 RNA-binding domain) Cell division-ribosomal stress proteins cluster;
Transcription factors bacterial
fig|6666666.230098.peg.1009 CDS CYYO01000002.1 523876 522980 -1 - 897 putative metal-dependent membrane protease - none -
fig|6666666.230098.peg.1010 CDS CYYO01000002.1 523989 525041 3 + 1053 FIG00404447: hypothetical protein - none -
fig|6666666.230098.peg.1011 CDS CYYO01000002.1 526941 525322 -3 - 1620 ABC transporter ATP-binding protein uup - none -
fig|6666666.230098.peg.1012 CDS CYYO01000002.1 527205 527795 3 + 591 Heat shock protein GrpE GroEL GroES;
Heat shock dnaK gene cluster extended;
Protein chaperones
fig|6666666.230098.peg.1013 CDS CYYO01000002.1 527807 528982 2 + 1176 Chaperone protein DnaJ GroEL GroES;
Heat shock dnaK gene cluster extended;
Protein chaperones
fig|6666666.230098.peg.1014 CDS CYYO01000002.1 531872 529047 -2 - 2826 Beta-hexosaminidase (EC 3.2.1.52) - none -
fig|6666666.230098.peg.1015 CDS CYYO01000002.1 535078 531908 -1 - 3171 TPR-domain containing protein - none -
fig|6666666.230098.peg.1016 CDS CYYO01000002.1 535779 535102 -3 - 678 hypothetical protein - none -
fig|6666666.230098.peg.1017 CDS CYYO01000002.1 536956 535856 -1 - 1101 hypothetical protein - none -
fig|6666666.230098.peg.1018 CDS CYYO01000002.1 538705 537014 -1 - 1692 Putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.230098.peg.1019 CDS CYYO01000002.1 541847 538740 -2 - 3108 TonB-dependent receptor Ton and Tol transport systems
fig|6666666.230098.peg.1020 CDS CYYO01000002.1 543050 541875 -2 - 1176 N-acylglucosamine 2-epimerase (EC 5.1.3.8) Sialic Acid Metabolism
fig|6666666.230098.peg.1021 CDS CYYO01000002.1 544474 543074 -1 - 1401 D-xylose proton-symporter XylE Xylose utilization
fig|6666666.230098.peg.1022 CDS CYYO01000002.1 545587 544487 -1 - 1101 FIG00938776: hypothetical protein - none -
fig|6666666.230098.peg.1023 CDS CYYO01000002.1 545826 547034 3 + 1209 Mlc, transcriptional repressor of MalT (the transcriptional activator of maltose regulon) and manXYZ operon Maltose and Maltodextrin Utilization
fig|6666666.230098.peg.1024 CDS CYYO01000002.1 547489 547031 -1 - 459 Tryptophan synthase beta chain like (EC 4.2.1.20) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.
fig|6666666.230098.peg.1025 CDS CYYO01000002.1 547818 547489 -3 - 330 hypothetical protein - none -
fig|6666666.230098.peg.1026 CDS CYYO01000002.1 548921 547815 -2 - 1107 putative protein involved in capsular polysaccharide biosynthesis - none -
fig|6666666.230098.peg.1027 CDS CYYO01000002.1 551287 548930 -1 - 2358 Polysialic acid transport protein KpsD precursor - none -
fig|6666666.230098.peg.1028 CDS CYYO01000002.1 551542 551411 -1 - 132 hypothetical protein - none -
fig|6666666.230098.peg.1029 CDS CYYO01000002.1 553212 551539 -3 - 1674 UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-) CBSS-296591.1.peg.2330;
N-linked Glycosylation in Bacteria
fig|6666666.230098.peg.1030 CDS CYYO01000002.1 553254 553421 3 + 168 hypothetical protein - none -
fig|6666666.230098.peg.1031 CDS CYYO01000002.1 553864 554169 1 + 306 Sialic acid-specific 9-O-acetylesterase - none -
fig|6666666.230098.peg.1032 CDS CYYO01000002.1 554283 554450 3 + 168 Sialic acid-specific 9-O-acetylesterase - none -
fig|6666666.230098.peg.1033 CDS CYYO01000002.1 554497 555606 1 + 1110 tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins Ton and Tol transport systems
fig|6666666.230098.peg.1034 CDS CYYO01000002.1 555673 556704 1 + 1032 FIG004453: protein YceG like CBSS-323097.3.peg.2594;
tRNA modification Bacteria
fig|6666666.230098.peg.1035 CDS CYYO01000002.1 556781 558373 2 + 1593 Indolepyruvate oxidoreductase subunit IorA (EC 1.2.7.8) Aromatic amino acid interconversions with aryl acids;
Indole-pyruvate oxidoreductase complex
fig|6666666.230098.peg.1036 CDS CYYO01000002.1 558378 558959 3 + 582 Indolepyruvate oxidoreductase subunit IorB (EC 1.2.7.8) Aromatic amino acid interconversions with aryl acids;
Indole-pyruvate oxidoreductase complex
fig|6666666.230098.peg.1037 CDS CYYO01000002.1 558990 560297 3 + 1308 Phenylacetate-coenzyme A ligase (EC 6.2.1.30) Aromatic amino acid interconversions with aryl acids
fig|6666666.230098.peg.1038 CDS CYYO01000002.1 560406 560266 -3 - 141 hypothetical protein - none -
fig|6666666.230098.peg.1039 CDS CYYO01000002.1 561129 560836 -3 - 294 LSU ribosomal protein L20p - none -
fig|6666666.230098.peg.1040 CDS CYYO01000002.1 562154 561552 -2 - 603 Translation initiation factor 3 Translation initiation factors bacterial
fig|6666666.230098.peg.1041 CDS CYYO01000002.1 564215 562275 -2 - 1941 Threonyl-tRNA synthetase (EC 6.1.1.3) tRNA aminoacylation, Thr
fig|6666666.230098.peg.1042 CDS CYYO01000002.1 566355 564295 -3 - 2061 TPR repeat precursor - none -
fig|6666666.230098.peg.1043 CDS CYYO01000002.1 567029 566472 -2 - 558 Peptide deformylase (EC 3.5.1.88) Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Translation termination factors bacterial
fig|6666666.230098.peg.1044 CDS CYYO01000002.1 567498 567073 -3 - 426 Putative Holliday junction resolvase YqgF - none -
fig|6666666.230098.peg.1045 CDS CYYO01000003.1 47 187 2 + 141 hypothetical protein - none -
fig|6666666.230098.peg.1046 CDS CYYO01000003.1 2352 637 -3 - 1716 Regulatory protein SusR Cellulosome
fig|6666666.230098.peg.1047 CDS CYYO01000003.1 2793 5708 3 + 2916 SusC, outer membrane protein involved in starch binding Cellulosome
fig|6666666.230098.peg.1048 CDS CYYO01000003.1 5727 7253 3 + 1527 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.230098.peg.1049 CDS CYYO01000003.1 7285 8796 1 + 1512 glycoside hydrolase family 30, candidate beta-glycosidase - none -
fig|6666666.230098.peg.1050 CDS CYYO01000003.1 8848 10155 1 + 1308 FIG01093408: hypothetical protein - none -
fig|6666666.230098.peg.1051 CDS CYYO01000003.1 10593 10249 -3 - 345 FIG00408297: hypothetical protein - none -
fig|6666666.230098.peg.1052 CDS CYYO01000003.1 10898 10590 -2 - 309 Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage Bacterial Cell Division;
Bacterial Cytoskeleton;
Cell division-ribosomal stress proteins cluster;
Stationary phase repair cluster
fig|6666666.230098.peg.1053 CDS CYYO01000003.1 11041 12855 1 + 1815 DNA polymerase III subunits gamma and tau (EC 2.7.7.7) DNA processing cluster
fig|6666666.230098.peg.1054 CDS CYYO01000003.1 12999 14870 3 + 1872 Two-component system sensor histidine kinase - none -
fig|6666666.230098.peg.1055 CDS CYYO01000003.1 14867 16828 2 + 1962 two-component system sensor histidine kinase - none -
fig|6666666.230098.peg.1056 CDS CYYO01000003.1 18812 17619 -2 - 1194 Aspartate aminotransferase (EC 2.6.1.1) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.230098.peg.1057 CDS CYYO01000003.1 20108 18894 -2 - 1215 3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) / GTP cyclohydrolase II (EC 3.5.4.25) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster;
Riboflavin synthesis cluster;
riboflavin to FAD
fig|6666666.230098.peg.1058 CDS CYYO01000003.1 21976 20123 -1 - 1854 membrane protein, putative - none -
fig|6666666.230098.peg.1059 CDS CYYO01000003.1 21975 22094 3 + 120 hypothetical protein - none -
fig|6666666.230098.peg.1060 CDS CYYO01000003.1 22487 22101 -2 - 387 FIG00937093: hypothetical protein - none -
fig|6666666.230098.peg.1061 CDS CYYO01000003.1 23007 24341 3 + 1335 Outer membrane component of tripartite multidrug resistance system Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria
fig|6666666.230098.peg.1062 CDS CYYO01000003.1 24418 25512 1 + 1095 Membrane fusion component of tripartite multidrug resistance system Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria
fig|6666666.230098.peg.1063 CDS CYYO01000003.1 25547 27187 2 + 1641 Inner membrane component of tripartite multidrug resistance system Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria
fig|6666666.230098.peg.1064 CDS CYYO01000003.1 27342 28091 3 + 750 Transcriptional regulator, AraC family - none -
fig|6666666.230098.peg.1065 CDS CYYO01000003.1 29537 28098 -2 - 1440 Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3) High affinity phosphate transporter and control of PHO regulon;
PhoR-PhoB two-component regulatory system;
Phosphate metabolism
fig|6666666.230098.peg.1066 CDS CYYO01000003.1 30679 29558 -1 - 1122 Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-) Potassium homeostasis
fig|6666666.230098.peg.1067 CDS CYYO01000003.1 31546 30791 -1 - 756 FrrB - none -
fig|6666666.230098.peg.1068 CDS CYYO01000003.1 32266 31694 -1 - 573 Potassium-transporting ATPase C chain (EC 3.6.3.12) (TC 3.A.3.7.1) Potassium homeostasis
fig|6666666.230098.peg.1069 CDS CYYO01000003.1 34327 32279 -1 - 2049 Potassium-transporting ATPase B chain (EC 3.6.3.12) (TC 3.A.3.7.1) Potassium homeostasis
fig|6666666.230098.peg.1070 CDS CYYO01000003.1 36079 34358 -1 - 1722 Potassium-transporting ATPase A chain (EC 3.6.3.12) (TC 3.A.3.7.1) Potassium homeostasis
fig|6666666.230098.peg.1071 CDS CYYO01000003.1 37982 36549 -2 - 1434 Response regulator of zinc sigma-54-dependent two-component system Zinc resistance
fig|6666666.230098.peg.1072 CDS CYYO01000003.1 38167 39540 1 + 1374 Aspartokinase (EC 2.7.2.4) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch;
Threonine and Homoserine Biosynthesis
fig|6666666.230098.peg.1073 CDS CYYO01000003.1 40316 39537 -2 - 780 FIG00412864: hypothetical protein - none -
fig|6666666.230098.peg.1074 CDS CYYO01000003.1 41507 40347 -2 - 1161 N-acylglucosamine 2-epimerase (EC 5.1.3.8) Sialic Acid Metabolism
fig|6666666.230098.peg.1075 CDS CYYO01000003.1 42954 41560 -3 - 1395 Xyloside transporter XynT Xylose utilization
fig|6666666.230098.peg.1076 CDS CYYO01000003.1 44144 42972 -2 - 1173 COG2152 predicted glycoside hydrolase - none -
fig|6666666.230098.peg.1077 CDS CYYO01000003.1 45297 44167 -3 - 1131 Mannan endo-1,4-beta-mannosidase - none -
fig|6666666.230098.peg.1078 CDS CYYO01000003.1 46885 45416 -1 - 1470 FIG00899022: hypothetical protein - none -
fig|6666666.230098.peg.1079 CDS CYYO01000003.1 48653 46887 -2 - 1767 FIG00897120: hypothetical protein - none -
fig|6666666.230098.peg.1080 CDS CYYO01000003.1 50164 48704 -1 - 1461 tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins Ton and Tol transport systems
fig|6666666.230098.peg.1081 CDS CYYO01000003.1 51634 50183 -1 - 1452 FIG00897658: hypothetical protein - none -
fig|6666666.230098.peg.1082 CDS CYYO01000003.1 52220 51606 -2 - 615 FIG00896332: hypothetical protein - none -
fig|6666666.230098.peg.1083 CDS CYYO01000003.1 53457 52300 -3 - 1158 RidA/YER057c/UK114 superfamily, group 7, YjgH-like protein - none -
fig|6666666.230098.peg.1084 CDS CYYO01000003.1 55016 53688 -2 - 1329 putative helicase - none -
fig|6666666.230098.peg.1085 CDS CYYO01000003.1 55349 56017 2 + 669 putative DNA-binding protein - none -
fig|6666666.230098.peg.1086 CDS CYYO01000003.1 56103 55981 -3 - 123 hypothetical protein - none -
fig|6666666.230098.peg.1087 CDS CYYO01000003.1 56060 56173 2 + 114 hypothetical protein - none -
fig|6666666.230098.peg.1088 CDS CYYO01000003.1 57070 56342 -1 - 729 hypothetical protein - none -
fig|6666666.230098.peg.1089 CDS CYYO01000003.1 58017 57142 -3 - 876 FIG00416167: hypothetical protein - none -
fig|6666666.230098.peg.1090 CDS CYYO01000003.1 59774 58005 -2 - 1770 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.230098.peg.1091 CDS CYYO01000003.1 63035 59787 -2 - 3249 SusC, outer membrane protein involved in starch binding Cellulosome
fig|6666666.230098.peg.1092 CDS CYYO01000003.1 65137 63440 -1 - 1698 Mannan endo-1,4-beta-mannosidase B precursor (EC 3.2.1.78) - none -
fig|6666666.230098.peg.1093 CDS CYYO01000003.1 67190 65205 -2 - 1986 FIG00410329: hypothetical protein - none -
fig|6666666.230098.peg.1094 CDS CYYO01000003.1 68525 67212 -2 - 1314 FIG00417257: hypothetical protein - none -
fig|6666666.230098.peg.1095 CDS CYYO01000003.1 70251 68530 -3 - 1722 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.230098.peg.1096 CDS CYYO01000003.1 73538 70272 -2 - 3267 TonB family protein / TonB-dependent receptor Ton and Tol transport systems
fig|6666666.230098.peg.1097 CDS CYYO01000003.1 73709 73596 -2 - 114 hypothetical protein - none -
fig|6666666.230098.peg.1098 CDS CYYO01000003.1 74699 73773 -2 - 927 Endoglucanase 5A (EC 3.2.1.4) (Endo-1,4-beta-glucanase 5A) (Alkaline cellulase) - none -
fig|6666666.230098.peg.1099 CDS CYYO01000003.1 76149 74857 -3 - 1293 Endo-1,4-beta-mannosidase Mannose Metabolism
fig|6666666.230098.peg.1100 CDS CYYO01000003.1 77524 76241 -1 - 1284 FIG00937556: hypothetical protein - none -
fig|6666666.230098.peg.1101 CDS CYYO01000003.1 78484 77597 -1 - 888 Transcriptional regulator of various polyols utilization, AraC family - none -
fig|6666666.230098.peg.1102 CDS CYYO01000003.1 78506 78646 2 + 141 hypothetical protein - none -
fig|6666666.230098.peg.1103 CDS CYYO01000003.1 81222 78778 -3 - 2445 Beta-galactosidase (EC 3.2.1.23) Galactosylceramide and Sulfatide metabolism;
Lactose and Galactose Uptake and Utilization;
Lactose utilization
fig|6666666.230098.peg.1104 CDS CYYO01000003.1 81445 83931 1 + 2487 Cellobiose phosphorylase (EC 2.4.1.-) - none -
fig|6666666.230098.peg.1105 CDS CYYO01000003.1 83950 84954 1 + 1005 Putative ion-channel protein - none -
fig|6666666.230098.peg.1106 CDS CYYO01000003.1 84961 86976 1 + 2016 Alpha-glucosidase (EC 3.2.1.20) D-Galacturonate and D-Glucuronate Utilization;
Maltose and Maltodextrin Utilization
fig|6666666.230098.peg.1107 CDS CYYO01000003.1 87168 87806 3 + 639 FIG00404238: hypothetical protein - none -
fig|6666666.230098.peg.1108 CDS CYYO01000003.1 87930 88559 3 + 630 FIG00404706: hypothetical protein - none -
fig|6666666.230098.peg.1109 CDS CYYO01000003.1 91708 88667 -1 - 3042 Beta-hexosaminidase (EC 3.2.1.52) - none -
fig|6666666.230098.peg.1110 CDS CYYO01000003.1 94743 91729 -3 - 3015 Beta-hexosaminidase (EC 3.2.1.52) - none -
fig|6666666.230098.peg.1111 CDS CYYO01000003.1 95653 94745 -1 - 909 5@1-nucleotidase (EC 3.1.3.5) Purine conversions
fig|6666666.230098.peg.1112 CDS CYYO01000003.1 96461 95685 -2 - 777 5@1-nucleotidase (EC 3.1.3.5) Purine conversions
fig|6666666.230098.peg.1113 CDS CYYO01000003.1 96715 97068 1 + 354 LSU ribosomal protein L19p - none -
fig|6666666.230098.peg.1114 CDS CYYO01000003.1 97351 97464 1 + 114 hypothetical protein - none -
fig|6666666.230098.peg.1115 CDS CYYO01000003.1 98806 97826 -1 - 981 Glucokinase (EC 2.7.1.2) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis
fig|6666666.230098.peg.1116 CDS CYYO01000003.1 98983 99699 1 + 717 ABC transporter ATP-binding protein YvcR - none -
fig|6666666.230098.peg.1117 CDS CYYO01000003.1 99753 101012 3 + 1260 ABC transporter permease protein - none -
fig|6666666.230098.peg.1118 CDS CYYO01000003.1 101018 102259 2 + 1242 ABC transporter permease protein - none -
fig|6666666.230098.peg.1119 CDS CYYO01000003.1 102338 103441 2 + 1104 Membrane fusion efflux protein - none -
fig|6666666.230098.peg.1120 CDS CYYO01000003.1 103472 104800 2 + 1329 RND efflux system, outer membrane lipoprotein CmeC Multidrug Resistance Efflux Pumps
fig|6666666.230098.peg.1121 CDS CYYO01000003.1 105802 104885 -1 - 918 FIG00410951: hypothetical protein - none -
fig|6666666.230098.peg.1122 CDS CYYO01000003.1 106113 105817 -3 - 297 hypothetical protein - none -
fig|6666666.230098.peg.1123 CDS CYYO01000003.1 106313 106137 -2 - 177 hypothetical protein - none -
fig|6666666.230098.peg.1124 CDS CYYO01000003.1 107446 106610 -1 - 837 FIG00938655: hypothetical protein - none -
fig|6666666.230098.peg.1125 CDS CYYO01000003.1 107640 108641 3 + 1002 Malate dehydrogenase (EC 1.1.1.37) Serine-glyoxylate cycle;
TCA Cycle
fig|6666666.230098.peg.1126 CDS CYYO01000003.1 108786 108664 -3 - 123 hypothetical protein - none -
fig|6666666.230098.peg.1127 CDS CYYO01000003.1 109895 108981 -2 - 915 Transcriptional regulator of rhamnose utilization, AraC family - none -
fig|6666666.230098.peg.1128 CDS CYYO01000003.1 111172 110018 -1 - 1155 Lactaldehyde reductase (EC 1.1.1.77) - none -
fig|6666666.230098.peg.1129 CDS CYYO01000003.1 112007 111198 -2 - 810 Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) - none -
fig|6666666.230098.peg.1130 CDS CYYO01000003.1 113065 112055 -1 - 1011 L-rhamnose-proton symporter - none -
fig|6666666.230098.peg.1131 CDS CYYO01000003.1 114341 113088 -2 - 1254 L-rhamnose isomerase (EC 5.3.1.14) - none -
fig|6666666.230098.peg.1132 CDS CYYO01000003.1 115855 114383 -1 - 1473 Rhamnulokinase (EC 2.7.1.5) - none -
fig|6666666.230098.peg.1133 CDS CYYO01000003.1 116113 115967 -1 - 147 hypothetical protein - none -
fig|6666666.230098.peg.1134 CDS CYYO01000003.1 116170 116643 1 + 474 Arginine pathway regulatory protein ArgR, repressor of arg regulon Arginine Biosynthesis -- gjo;
Arginine Biosynthesis extended;
Arginine and Ornithine Degradation
fig|6666666.230098.peg.1135 CDS CYYO01000003.1 116680 117237 1 + 558 FIG00651573: hypothetical protein - none -
fig|6666666.230098.peg.1136 CDS CYYO01000003.1 117251 118456 2 + 1206 Argininosuccinate synthase (EC 6.3.4.5) Arginine Biosynthesis -- gjo;
Arginine Biosynthesis extended
fig|6666666.230098.peg.1137 CDS CYYO01000003.1 118668 119636 3 + 969 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) Arginine Biosynthesis -- gjo;
Arginine Biosynthesis extended
fig|6666666.230098.peg.1138 CDS CYYO01000003.1 119642 120763 2 + 1122 Acetylornithine aminotransferase (EC 2.6.1.11) Arginine Biosynthesis -- gjo;
Arginine Biosynthesis extended
fig|6666666.230098.peg.1139 CDS CYYO01000003.1 120893 121666 2 + 774 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) A Hypothetical Protein Related to Proline Metabolism;
Proline Synthesis
fig|6666666.230098.peg.1140 CDS CYYO01000003.1 121788 122342 3 + 555 Transcriptional regulator - none -
fig|6666666.230098.peg.1141 CDS CYYO01000003.1 122350 124005 1 + 1656 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases - none -
fig|6666666.230098.peg.1142 CDS CYYO01000003.1 124225 125475 1 + 1251 FIG00414882: hypothetical protein - none -
fig|6666666.230098.peg.1143 CDS CYYO01000003.1 127234 126251 -1 - 984 hypothetical protein - none -
fig|6666666.230098.peg.1144 CDS CYYO01000003.1 128104 127976 -1 - 129 hypothetical protein - none -
fig|6666666.230098.peg.1145 CDS CYYO01000003.1 129697 129942 1 + 246 hypothetical protein - none -
fig|6666666.230098.peg.1146 CDS CYYO01000003.1 130199 129939 -2 - 261 hypothetical protein - none -
fig|6666666.230098.peg.1147 CDS CYYO01000003.1 130841 130590 -2 - 252 hypothetical protein - none -
fig|6666666.230098.peg.1148 CDS CYYO01000003.1 132931 130850 -1 - 2082 hypothetical protein - none -
fig|6666666.230098.peg.1149 CDS CYYO01000003.1 134055 133000 -3 - 1056 Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129) 16S rRNA modification within P site of ribosome;
Bacterial Cell Division;
Bacterial Cytoskeleton;
CBSS-83331.1.peg.3039;
Peptidoglycan Biosynthesis
fig|6666666.230098.peg.1150 CDS CYYO01000003.1 134145 134267 3 + 123 hypothetical protein - none -
fig|6666666.230098.peg.1151 CDS CYYO01000003.1 134647 134510 -1 - 138 hypothetical protein - none -
fig|6666666.230098.peg.1152 CDS CYYO01000003.1 136097 135510 -2 - 588 Integrase - none -
fig|6666666.230098.peg.1153 CDS CYYO01000003.1 136389 136267 -3 - 123 hypothetical protein - none -
fig|6666666.230098.peg.1154 CDS CYYO01000003.1 137454 136438 -3 - 1017 FIG00936932: hypothetical protein - none -
fig|6666666.230098.peg.1155 CDS CYYO01000003.1 137611 137480 -1 - 132 hypothetical protein - none -
fig|6666666.230098.peg.1156 CDS CYYO01000003.1 137839 137961 1 + 123 hypothetical protein - none -
fig|6666666.230098.peg.1157 CDS CYYO01000003.1 139079 138036 -2 - 1044 hypothetical protein - none -
fig|6666666.230098.peg.1158 CDS CYYO01000003.1 139671 139498 -3 - 174 hypothetical protein - none -
fig|6666666.230098.peg.1159 CDS CYYO01000003.1 141771 139951 -3 - 1821 FIG00939857: hypothetical protein - none -
fig|6666666.230098.peg.1160 CDS CYYO01000003.1 142238 141771 -2 - 468 hypothetical protein - none -
fig|6666666.230098.peg.1161 CDS CYYO01000003.1 143446 142307 -1 - 1140 tyrosine type site-specific recombinase - none -
fig|6666666.230098.peg.1162 CDS CYYO01000003.1 145280 143940 -2 - 1341 Argininosuccinate lyase (EC 4.3.2.1) Arginine Biosynthesis -- gjo;
Arginine Biosynthesis extended
fig|6666666.230098.peg.1163 CDS CYYO01000003.1 145719 145309 -3 - 411 FIG00938009: hypothetical protein - none -
fig|6666666.230098.peg.1164 CDS CYYO01000003.1 146451 145813 -3 - 639 Orotate phosphoribosyltransferase (EC 2.4.2.10) De Novo Pyrimidine Synthesis
fig|6666666.230098.peg.1165 CDS CYYO01000003.1 147013 146534 -1 - 480 Regulatory protein RecX DNA repair system including RecA, MutS and a hypothetical protein;
RecA and RecX
fig|6666666.230098.peg.1166 CDS CYYO01000003.1 147846 147010 -3 - 837 Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2 A Gammaproteobacteria Cluster Relating to Translation;
CBSS-216600.3.peg.802;
Translation termination factors bacterial
fig|6666666.230098.peg.1167 CDS CYYO01000003.1 147921 148976 3 + 1056 Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster;
Riboflavin synthesis cluster
fig|6666666.230098.peg.1168 CDS CYYO01000003.1 149111 150475 2 + 1365 FIG00936986: hypothetical protein - none -
fig|6666666.230098.peg.1169 CDS CYYO01000003.1 150478 151215 1 + 738 Undecaprenyl diphosphate synthase (EC 2.5.1.31) CBSS-83331.1.peg.3039;
Isoprenoid Biosynthesis;
Isoprenoinds for Quinones;
Polyprenyl Diphosphate Biosynthesis
fig|6666666.230098.peg.1170 CDS CYYO01000003.1 151268 153907 2 + 2640 Outer membrane protein assembly factor YaeT precursor Llipid A biosynthesis cluster
fig|6666666.230098.peg.1171 CDS CYYO01000003.1 153964 154464 1 + 501 Outer membrane protein H precursor Llipid A biosynthesis cluster;
Periplasmic Stress Response
fig|6666666.230098.peg.1172 CDS CYYO01000003.1 154698 155099 3 + 402 Outer membrane protein H precursor Llipid A biosynthesis cluster;
Periplasmic Stress Response
fig|6666666.230098.peg.1173 CDS CYYO01000003.1 155208 156047 3 + 840 Glutamate racemase (EC 5.1.1.3) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Peptidoglycan Biosynthesis
fig|6666666.230098.peg.1174 CDS CYYO01000003.1 156123 156362 3 + 240 FIG00405789: hypothetical protein - none -
fig|6666666.230098.peg.1175 CDS CYYO01000003.1 156352 157431 1 + 1080 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA Proline Synthesis;
Proline Synthesis
fig|6666666.230098.peg.1176 CDS CYYO01000003.1 157555 158745 1 + 1191 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) Proline Synthesis
fig|6666666.230098.peg.1177 CDS CYYO01000003.1 158790 159743 3 + 954 N-acetylornithine carbamoyltransferase (EC 2.1.3.9) Arginine Biosynthesis -- gjo;
Arginine Biosynthesis extended
fig|6666666.230098.peg.1178 CDS CYYO01000003.1 160271 159885 -2 - 387 FIG00403504: hypothetical protein - none -
fig|6666666.230098.peg.1179 CDS CYYO01000003.1 160953 160285 -3 - 669 FIG00402748: hypothetical protein - none -
fig|6666666.230098.peg.1180 CDS CYYO01000003.1 162115 160958 -1 - 1158 FIG00938859: hypothetical protein - none -
fig|6666666.230098.peg.1181 CDS CYYO01000003.1 163108 162128 -1 - 981 D-alanine--D-alanine ligase (EC 6.3.2.4) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo;
cell division cluster containing FtsQ
fig|6666666.230098.peg.1182 CDS CYYO01000003.1 164175 163105 -3 - 1071 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) RNA pseudouridine syntheses;
Ribosome biogenesis bacterial
fig|6666666.230098.peg.1183 CDS CYYO01000003.1 164876 164229 -2 - 648 FIG00938099: hypothetical protein - none -
fig|6666666.230098.peg.1184 CDS CYYO01000003.1 165282 165046 -3 - 237 LSU ribosomal protein L34p Cell Division Subsystem including YidCD;
RNA modification cluster
fig|6666666.230098.peg.1185 CDS CYYO01000003.1 165402 165968 3 + 567 Translation elongation factor P Translation elongation factors bacterial
fig|6666666.230098.peg.1186 CDS CYYO01000003.1 166114 167103 1 + 990 Glycosyltransferase CBSS-258594.1.peg.3339
fig|6666666.230098.peg.1187 CDS CYYO01000003.1 167135 167821 2 + 687 DNA repair protein RadC Bacterial cell division cluster;
DNA repair, bacterial
fig|6666666.230098.peg.1188 CDS CYYO01000003.1 168171 168482 3 + 312 probably aromatic ring hydroxylating enzyme, evidenced by COGnitor; PaaD-like protein (DUF59) involved in Fe-S cluster assembly Iron-sulfur cluster assembly
fig|6666666.230098.peg.1189 CDS CYYO01000003.1 168516 169286 3 + 771 UDP-2,3-diacylglucosamine diphosphatase (EC 3.6.1.54) Llipid A biosynthesis cluster
fig|6666666.230098.peg.1190 CDS CYYO01000003.1 169328 171184 2 + 1857 Beta-lactamase class C and other penicillin binding proteins Beta-lactamase
fig|6666666.230098.peg.1191 CDS CYYO01000003.1 171284 171496 2 + 213 FIG00410184: hypothetical protein - none -
fig|6666666.230098.peg.1192 CDS CYYO01000003.1 172991 171603 -2 - 1389 Alkaline phosphatase (EC 3.1.3.1) Phosphate metabolism
fig|6666666.230098.peg.1193 CDS CYYO01000003.1 174380 173184 -2 - 1197 Acetate kinase (EC 2.7.2.1) CBSS-257314.1.peg.752;
Fermentations: Lactate;
Fermentations: Mixed acid;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.230098.peg.1194 CDS CYYO01000003.1 175421 174402 -2 - 1020 Phosphate acetyltransferase (EC 2.3.1.8) Fermentations: Lactate;
Fermentations: Mixed acid;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.230098.peg.1195 CDS CYYO01000003.1 175703 176083 2 + 381 Antiholin-like protein LrgA Murein hydrolase regulation and cell death
fig|6666666.230098.peg.1196 CDS CYYO01000003.1 176080 176775 1 + 696 LrgA-associated membrane protein LrgB Murein hydrolase regulation and cell death
fig|6666666.230098.peg.1197 CDS CYYO01000003.1 176828 177742 2 + 915 FIG00406100: hypothetical protein - none -
fig|6666666.230098.peg.1198 CDS CYYO01000003.1 177782 178801 2 + 1020 PhnO protein - none -
fig|6666666.230098.peg.1199 CDS CYYO01000003.1 180123 178804 -3 - 1320 TldE protein, part of TldE/TldD proteolytic complex Putative TldE-TldD proteolytic complex
fig|6666666.230098.peg.1200 CDS CYYO01000003.1 181684 180146 -1 - 1539 TldD protein, part of TldE/TldD proteolytic complex CBSS-354.1.peg.2917;
Putative TldE-TldD proteolytic complex
fig|6666666.230098.peg.1201 CDS CYYO01000003.1 182528 181764 -2 - 765 Diadenylate cyclase spyDAC; Bacterial checkpoint controller DisA with nucleotide-binding domain Bacterial checkpoint-control-related cluster;
Bacterial checkpoint-control-related cluster
fig|6666666.230098.peg.1202 CDS CYYO01000003.1 183406 182555 -1 - 852 Dihydropteroate synthase (EC 2.5.1.15) Folate Biosynthesis;
Folate biosynthesis cluster
fig|6666666.230098.peg.1203 CDS CYYO01000003.1 183591 184889 3 + 1299 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase (EC 6.3.2.10) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo
fig|6666666.230098.peg.1204 CDS CYYO01000003.1 185275 184892 -1 - 384 FIG00405104: hypothetical protein - none -
fig|6666666.230098.peg.1205 CDS CYYO01000003.1 185379 186746 3 + 1368 Putative sodium-dependent transporter - none -
fig|6666666.230098.peg.1206 CDS CYYO01000003.1 186753 187703 3 + 951 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) Ammonia assimilation;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.230098.peg.1207 CDS CYYO01000003.1 187840 190152 1 + 2313 FIG00404599: hypothetical protein - none -
fig|6666666.230098.peg.1208 CDS CYYO01000003.1 190814 190155 -2 - 660 Lipoprotein releasing system ATP-binding protein LolD Lipoprotein sorting system
fig|6666666.230098.peg.1209 CDS CYYO01000003.1 191541 190879 -3 - 663 Molybdopterin biosynthesis protein MoeB - none -
fig|6666666.230098.peg.1210 CDS CYYO01000003.1 193777 191648 -1 - 2130 Na+/H+ antiporter - none -
fig|6666666.230098.peg.1211 CDS CYYO01000003.1 193932 194939 3 + 1008 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch;
Threonine and Homoserine Biosynthesis
fig|6666666.230098.peg.1212 CDS CYYO01000003.1 195214 196500 1 + 1287 Integrase - none -
fig|6666666.230098.peg.1213 CDS CYYO01000003.1 196815 196543 -3 - 273 hypothetical protein - none -
fig|6666666.230098.peg.1214 CDS CYYO01000003.1 197093 196812 -2 - 282 DNA-binding protein HU DNA structural proteins, bacterial
fig|6666666.230098.peg.1215 CDS CYYO01000003.1 198173 197301 -2 - 873 hypothetical protein - none -
fig|6666666.230098.peg.1216 CDS CYYO01000003.1 199360 198341 -1 - 1020 hypothetical protein - none -
fig|6666666.230098.peg.1217 CDS CYYO01000003.1 200953 199367 -1 - 1587 Replicative DNA helicase (EC 3.6.1.-) @ intein-containing Inteins
fig|6666666.230098.peg.1218 CDS CYYO01000003.1 201387 200953 -3 - 435 hypothetical protein - none -
fig|6666666.230098.peg.1219 CDS CYYO01000003.1 201509 202846 2 + 1338 hypothetical protein - none -
fig|6666666.230098.peg.1220 CDS CYYO01000003.1 203165 202971 -2 - 195 hypothetical protein - none -
fig|6666666.230098.peg.1221 CDS CYYO01000003.1 203450 203232 -2 - 219 hypothetical protein - none -
fig|6666666.230098.peg.1222 CDS CYYO01000003.1 204056 203457 -2 - 600 hypothetical protein - none -
fig|6666666.230098.peg.1223 CDS CYYO01000003.1 204255 204049 -3 - 207 hypothetical protein - none -
fig|6666666.230098.peg.1224 CDS CYYO01000003.1 204720 204268 -3 - 453 Lysozyme-related protein - none -
fig|6666666.230098.peg.1225 CDS CYYO01000003.1 205004 204717 -2 - 288 hypothetical protein - none -
fig|6666666.230098.peg.1226 CDS CYYO01000003.1 205136 205011 -2 - 126 hypothetical protein - none -
fig|6666666.230098.peg.1227 CDS CYYO01000003.1 205635 205147 -3 - 489 hypothetical protein - none -
fig|6666666.230098.peg.1228 CDS CYYO01000003.1 205975 205697 -1 - 279 hypothetical protein - none -
fig|6666666.230098.peg.1229 CDS CYYO01000003.1 206837 206064 -2 - 774 hypothetical protein - none -
fig|6666666.230098.peg.1230 CDS CYYO01000003.1 207352 206819 -1 - 534 Guanylate kinase (EC 2.7.4.8) CBSS-323097.3.peg.2594;
Purine conversions
fig|6666666.230098.peg.1231 CDS CYYO01000003.1 210630 207352 -3 - 3279 DNA polymerase III alpha subunit (EC 2.7.7.7) CBSS-350688.3.peg.1509;
Inteins;
Phage replication
fig|6666666.230098.peg.1232 CDS CYYO01000003.1 211382 210627 -2 - 756 Adenine-specific methyltransferase (EC 2.1.1.72) CBSS-257314.1.peg.752
fig|6666666.230098.peg.1233 CDS CYYO01000003.1 213093 211354 -3 - 1740 DNA polymerase III alpha subunit (EC 2.7.7.7) CBSS-350688.3.peg.1509;
Inteins;
Phage replication
fig|6666666.230098.peg.1234 CDS CYYO01000003.1 214127 213093 -2 - 1035 hypothetical protein - none -
fig|6666666.230098.peg.1235 CDS CYYO01000003.1 215490 214132 -3 - 1359 DNA primase/helicase, phage-associated Phage replication
fig|6666666.230098.peg.1236 CDS CYYO01000003.1 216076 215483 -1 - 594 hypothetical protein - none -
fig|6666666.230098.peg.1237 CDS CYYO01000003.1 216524 216081 -2 - 444 hypothetical protein - none -
fig|6666666.230098.peg.1238 CDS CYYO01000003.1 217327 216839 -1 - 489 hypothetical protein - none -
fig|6666666.230098.peg.1239 CDS CYYO01000003.1 219620 217305 -2 - 2316 FIG00412057: hypothetical protein - none -
fig|6666666.230098.peg.1240 CDS CYYO01000003.1 220675 219608 -1 - 1068 hypothetical protein - none -
fig|6666666.230098.peg.1241 CDS CYYO01000003.1 221265 220675 -3 - 591 Phage protein - none -
fig|6666666.230098.peg.1242 CDS CYYO01000003.1 222629 221352 -2 - 1278 FIG00412264: hypothetical protein - none -
fig|6666666.230098.peg.1243 CDS CYYO01000003.1 223169 222927 -2 - 243 hypothetical protein - none -
fig|6666666.230098.peg.1244 CDS CYYO01000003.1 226091 223509 -2 - 2583 hypothetical protein - none -
fig|6666666.230098.peg.1245 CDS CYYO01000003.1 226612 226088 -1 - 525 hypothetical protein - none -
fig|6666666.230098.peg.1246 CDS CYYO01000003.1 227540 226644 -2 - 897 hypothetical protein - none -
fig|6666666.230098.peg.1247 CDS CYYO01000003.1 228462 227512 -3 - 951 hypothetical protein - none -
fig|6666666.230098.peg.1248 CDS CYYO01000003.1 229135 228455 -1 - 681 hypothetical protein - none -
fig|6666666.230098.peg.1249 CDS CYYO01000003.1 229548 229228 -3 - 321 hypothetical protein - none -
fig|6666666.230098.peg.1250 CDS CYYO01000003.1 229895 229587 -2 - 309 hypothetical protein - none -
fig|6666666.230098.peg.1251 CDS CYYO01000003.1 235253 229947 -2 - 5307 YapH protein - none -
fig|6666666.230098.peg.1252 CDS CYYO01000003.1 236261 235257 -2 - 1005 Phage protein - none -
fig|6666666.230098.peg.1253 CDS CYYO01000003.1 239385 236308 -3 - 3078 FIG00417940: hypothetical protein - none -
fig|6666666.230098.peg.1254 CDS CYYO01000003.1 241097 239454 -2 - 1644 FIG00411473: hypothetical protein - none -
fig|6666666.230098.peg.1255 CDS CYYO01000003.1 241942 241094 -1 - 849 FIG00414479: hypothetical protein - none -
fig|6666666.230098.peg.1256 CDS CYYO01000003.1 243237 242092 -3 - 1146 protein of unknown function DUF1016 - none -
fig|6666666.230098.peg.1257 CDS CYYO01000003.1 244563 243394 -3 - 1170 hypothetical protein - none -
fig|6666666.230098.peg.1258 CDS CYYO01000003.1 246064 244736 -1 - 1329 FIG00402888: hypothetical protein - none -
fig|6666666.230098.peg.1259 CDS CYYO01000003.1 247032 246055 -3 - 978 hypothetical protein - none -
fig|6666666.230098.peg.1260 CDS CYYO01000003.1 250881 247045 -3 - 3837 Phage tail length tape-measure protein Phage tail proteins;
Phage tail proteins 2
fig|6666666.230098.peg.1261 CDS CYYO01000003.1 251530 251159 -1 - 372 hypothetical protein - none -
fig|6666666.230098.peg.1262 CDS CYYO01000003.1 252067 251585 -1 - 483 Phage DNA modification methyltransferase - none -
fig|6666666.230098.peg.1263 CDS CYYO01000003.1 252537 252223 -3 - 315 Thioredoxin - none -
fig|6666666.230098.peg.1264 CDS CYYO01000003.1 253081 252662 -1 - 420 hypothetical protein - none -
fig|6666666.230098.peg.1265 CDS CYYO01000003.1 254470 253127 -1 - 1344 hypothetical protein - none -
fig|6666666.230098.peg.1266 CDS CYYO01000003.1 255913 254864 -1 - 1050 FIG00412134: hypothetical protein - none -
fig|6666666.230098.peg.1267 CDS CYYO01000003.1 257293 256031 -1 - 1263 Prophage Clp protease-like protein cAMP signaling in bacteria
fig|6666666.230098.peg.1268 CDS CYYO01000003.1 257999 257835 -2 - 165 hypothetical protein - none -
fig|6666666.230098.peg.1269 CDS CYYO01000003.1 258545 258099 -2 - 447 hypothetical protein - none -
fig|6666666.230098.peg.1270 CDS CYYO01000003.1 259686 258547 -3 - 1140 Phage protein - none -
fig|6666666.230098.peg.1271 CDS CYYO01000003.1 259816 259676 -1 - 141 hypothetical protein - none -
fig|6666666.230098.peg.1272 CDS CYYO01000003.1 260427 260035 -3 - 393 hypothetical protein - none -
fig|6666666.230098.peg.1273 CDS CYYO01000003.1 260730 262055 3 + 1326 Mu-like prophage FluMu protein gp29 - none -
fig|6666666.230098.peg.1274 CDS CYYO01000003.1 262060 262878 1 + 819 hypothetical protein - none -
fig|6666666.230098.peg.1275 CDS CYYO01000003.1 262866 263435 3 + 570 hypothetical protein - none -
fig|6666666.230098.peg.1276 CDS CYYO01000003.1 263432 264157 2 + 726 FIG00409864: hypothetical protein - none -
fig|6666666.230098.peg.1277 CDS CYYO01000003.1 264347 267175 2 + 2829 hypothetical protein - none -
fig|6666666.230098.peg.1278 CDS CYYO01000003.1 267523 267681 1 + 159 hypothetical protein - none -
fig|6666666.230098.peg.1279 CDS CYYO01000003.1 268343 268978 2 + 636 hypothetical protein - none -
fig|6666666.230098.peg.1280 CDS CYYO01000003.1 269191 269649 1 + 459 hypothetical protein - none -
fig|6666666.230098.peg.1281 CDS CYYO01000003.1 270075 270425 3 + 351 hypothetical protein - none -
fig|6666666.230098.peg.1282 CDS CYYO01000003.1 270468 270605 3 + 138 hypothetical protein - none -
fig|6666666.230098.peg.1283 CDS CYYO01000003.1 270771 271184 3 + 414 hypothetical protein - none -
fig|6666666.230098.peg.1284 CDS CYYO01000003.1 271171 271470 1 + 300 hypothetical protein - none -
fig|6666666.230098.peg.1285 CDS CYYO01000003.1 271473 272135 3 + 663 hypothetical protein - none -
fig|6666666.230098.peg.1286 CDS CYYO01000003.1 272162 273424 2 + 1263 Retron-type RNA-directed DNA polymerase (EC 2.7.7.49) Group II intron-associated genes
fig|6666666.230098.peg.1287 CDS CYYO01000003.1 275221 276078 1 + 858 hypothetical protein - none -
fig|6666666.230098.peg.1288 CDS CYYO01000003.1 276332 276544 2 + 213 hypothetical protein - none -
fig|6666666.230098.peg.1289 CDS CYYO01000003.1 276546 277016 3 + 471 hypothetical protein - none -
fig|6666666.230098.peg.1290 CDS CYYO01000003.1 277029 277259 3 + 231 hypothetical protein - none -
fig|6666666.230098.peg.1291 CDS CYYO01000003.1 277489 277731 1 + 243 hypothetical protein - none -
fig|6666666.230098.peg.1292 CDS CYYO01000003.1 277761 278054 3 + 294 hypothetical protein - none -
fig|6666666.230098.peg.1293 CDS CYYO01000003.1 278102 278593 2 + 492 hypothetical protein - none -
fig|6666666.230098.peg.1294 CDS CYYO01000003.1 278881 279114 1 + 234 hypothetical protein - none -
fig|6666666.230098.peg.1295 CDS CYYO01000003.1 279119 279826 2 + 708 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) ABC transporter oligopeptide (TC 3.A.1.5.1)
fig|6666666.230098.peg.1296 CDS CYYO01000003.1 279902 281551 2 + 1650 hypothetical protein - none -
fig|6666666.230098.peg.1297 CDS CYYO01000003.1 281657 282532 2 + 876 hypothetical protein - none -
fig|6666666.230098.peg.1298 CDS CYYO01000003.1 282569 282847 2 + 279 hypothetical protein - none -
fig|6666666.230098.peg.1299 CDS CYYO01000003.1 282972 283382 3 + 411 hypothetical protein - none -
fig|6666666.230098.peg.1300 CDS CYYO01000003.1 283336 284016 1 + 681 hypothetical protein - none -
fig|6666666.230098.peg.1301 CDS CYYO01000003.1 284021 284602 2 + 582 hypothetical protein - none -
fig|6666666.230098.peg.1302 CDS CYYO01000003.1 284749 284633 -1 - 117 hypothetical protein - none -
fig|6666666.230098.peg.1303 CDS CYYO01000003.1 284739 284870 3 + 132 hypothetical protein - none -
fig|6666666.230098.peg.1304 CDS CYYO01000003.1 284885 285505 2 + 621 hypothetical protein - none -
fig|6666666.230098.peg.1305 CDS CYYO01000003.1 285541 286239 1 + 699 hypothetical protein - none -
fig|6666666.230098.peg.1306 CDS CYYO01000003.1 286247 286561 2 + 315 hypothetical protein - none -
fig|6666666.230098.peg.1307 CDS CYYO01000003.1 286579 286863 1 + 285 hypothetical protein - none -
fig|6666666.230098.peg.1308 CDS CYYO01000003.1 286860 287408 3 + 549 hypothetical protein - none -
fig|6666666.230098.peg.1309 CDS CYYO01000003.1 287503 288453 1 + 951 hypothetical protein - none -
fig|6666666.230098.peg.1310 CDS CYYO01000003.1 288576 288737 3 + 162 hypothetical protein - none -
fig|6666666.230098.peg.1311 CDS CYYO01000003.1 289259 289648 2 + 390 Integrase - none -
fig|6666666.230098.peg.1312 CDS CYYO01000003.1 289661 290593 2 + 933 hypothetical protein - none -
fig|6666666.230098.peg.1313 CDS CYYO01000003.1 290593 293598 1 + 3006 hypothetical protein - none -
fig|6666666.230098.peg.1314 CDS CYYO01000003.1 293619 293936 3 + 318 hypothetical protein - none -
fig|6666666.230098.peg.1315 CDS CYYO01000003.1 294449 294676 2 + 228 hypothetical protein - none -
fig|6666666.230098.peg.1316 CDS CYYO01000003.1 294801 295382 3 + 582 hypothetical protein - none -
fig|6666666.230098.peg.1317 CDS CYYO01000003.1 295387 297147 1 + 1761 hypothetical protein - none -
fig|6666666.230098.peg.1318 CDS CYYO01000003.1 297173 297352 2 + 180 hypothetical protein - none -
fig|6666666.230098.peg.1319 CDS CYYO01000003.1 297353 297925 2 + 573 hypothetical protein - none -
fig|6666666.230098.peg.1320 CDS CYYO01000003.1 297960 298421 3 + 462 hypothetical protein - none -
fig|6666666.230098.peg.1321 CDS CYYO01000003.1 298685 299212 2 + 528 hypothetical protein - none -
fig|6666666.230098.peg.1322 CDS CYYO01000003.1 299214 299426 3 + 213 hypothetical protein - none -
fig|6666666.230098.peg.1323 CDS CYYO01000003.1 299436 299705 3 + 270 hypothetical protein - none -
fig|6666666.230098.peg.1324 CDS CYYO01000003.1 299680 300666 1 + 987 hypothetical protein - none -
fig|6666666.230098.peg.1325 CDS CYYO01000003.1 300770 301066 2 + 297 hypothetical protein - none -
fig|6666666.230098.peg.1326 CDS CYYO01000003.1 301081 301476 1 + 396 hypothetical protein - none -
fig|6666666.230098.peg.1327 CDS CYYO01000003.1 301578 301952 3 + 375 hypothetical protein - none -
fig|6666666.230098.peg.1328 CDS CYYO01000003.1 301985 302254 2 + 270 hypothetical protein - none -
fig|6666666.230098.peg.1329 CDS CYYO01000003.1 302481 302897 3 + 417 hypothetical protein - none -
fig|6666666.230098.peg.1330 CDS CYYO01000003.1 303158 303580 2 + 423 hypothetical protein - none -
fig|6666666.230098.peg.1331 CDS CYYO01000003.1 303577 303972 1 + 396 Ribonuclease HI-related protein 3 Ribonuclease H
fig|6666666.230098.peg.1332 CDS CYYO01000003.1 304134 304262 3 + 129 hypothetical protein - none -
fig|6666666.230098.peg.1333 CDS CYYO01000003.1 304642 305148 1 + 507 hypothetical protein - none -
fig|6666666.230098.peg.1334 CDS CYYO01000003.1 306710 305226 -2 - 1485 hypothetical protein - none -
fig|6666666.230098.peg.1335 CDS CYYO01000003.1 306986 307582 2 + 597 hypothetical protein - none -
fig|6666666.230098.peg.1336 CDS CYYO01000003.1 307587 308381 3 + 795 hypothetical protein - none -
fig|6666666.230098.peg.1337 CDS CYYO01000003.1 308423 308992 2 + 570 hypothetical protein - none -
fig|6666666.230098.peg.1338 CDS CYYO01000003.1 308989 309219 1 + 231 hypothetical protein - none -
fig|6666666.230098.peg.1339 CDS CYYO01000003.1 309231 309674 3 + 444 hypothetical protein - none -
fig|6666666.230098.peg.1340 CDS CYYO01000003.1 309686 310489 2 + 804 Putative phage-encoded peptidoglycan binding protein - none -
fig|6666666.230098.peg.1341 CDS CYYO01000003.1 310720 310920 1 + 201 hypothetical protein - none -
fig|6666666.230098.peg.1342 CDS CYYO01000003.1 311180 311698 2 + 519 Two-component system response regulator - none -
fig|6666666.230098.peg.1343 CDS CYYO01000003.1 313909 311810 -1 - 2100 FIG00409736: hypothetical protein - none -
fig|6666666.230098.peg.1344 CDS CYYO01000003.1 314478 315704 3 + 1227 Transcriptional regulator, AraC family - none -
fig|6666666.230098.peg.1345 CDS CYYO01000003.1 315844 317010 1 + 1167 hypothetical protein - none -
fig|6666666.230098.peg.1346 CDS CYYO01000003.1 317019 318044 3 + 1026 hypothetical protein - none -
fig|6666666.230098.peg.1347 CDS CYYO01000003.1 318092 319681 2 + 1590 hypothetical protein - none -
fig|6666666.230098.peg.1348 CDS CYYO01000003.1 320196 320879 3 + 684 hypothetical protein - none -
fig|6666666.230098.peg.1349 CDS CYYO01000003.1 320928 321263 3 + 336 hypothetical protein - none -
fig|6666666.230098.peg.1350 CDS CYYO01000003.1 323538 321640 -3 - 1899 Putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.230098.peg.1351 CDS CYYO01000003.1 326899 323558 -1 - 3342 TonB family protein / TonB-dependent receptor Ton and Tol transport systems
fig|6666666.230098.peg.1352 CDS CYYO01000003.1 327435 328151 3 + 717 hypothetical protein - none -
fig|6666666.230098.peg.1353 CDS CYYO01000003.1 328280 328131 -2 - 150 hypothetical protein - none -
fig|6666666.230098.peg.1354 CDS CYYO01000003.1 328657 331959 1 + 3303 TonB family protein / TonB-dependent receptor Ton and Tol transport systems
fig|6666666.230098.peg.1355 CDS CYYO01000003.1 331982 333667 2 + 1686 Putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.230098.peg.1356 CDS CYYO01000003.1 335064 335504 3 + 441 nucleotidyltransferase substrate binding protein, HI0074 family - none -
fig|6666666.230098.peg.1357 CDS CYYO01000003.1 335508 335816 3 + 309 Nucleotidyltransferase (EC 2.7.7.-) - none -
fig|6666666.230098.peg.1358 CDS CYYO01000003.1 336588 335965 -3 - 624 putative DNA-binding protein - none -
fig|6666666.230098.peg.1359 CDS CYYO01000003.1 336960 339053 3 + 2094 putative helicase - none -
fig|6666666.230098.peg.1360 CDS CYYO01000003.1 339188 340450 2 + 1263 alternate gene name: yzbB - none -
fig|6666666.230098.peg.1361 CDS CYYO01000003.1 340595 342049 2 + 1455 sodium/iodide co-transporter - none -
fig|6666666.230098.peg.1362 CDS CYYO01000003.1 342095 345175 2 + 3081 Xanthan lyase - none -
fig|6666666.230098.peg.1363 CDS CYYO01000003.1 345225 347054 3 + 1830 Serine/threonine protein kinase related protein - none -
fig|6666666.230098.peg.1364 CDS CYYO01000003.1 347079 348539 3 + 1461 Putative glycosyltransferase CBSS-296591.1.peg.2330
fig|6666666.230098.peg.1365 CDS CYYO01000003.1 348541 349473 1 + 933 putative glycosyltransferase - possibly involved in cell wall localization and side chain formation of rhamnose-glucose polysaccharide Rhamnose containing glycans
fig|6666666.230098.peg.1366 CDS CYYO01000003.1 349515 350834 3 + 1320 Amidase enhancer - none -
fig|6666666.230098.peg.1367 CDS CYYO01000003.1 350862 352184 3 + 1323 AmpG permease Recycling of Peptidoglycan Amino Acids
fig|6666666.230098.peg.1368 CDS CYYO01000003.1 352284 353474 3 + 1191 alternate gene name: yzbB - none -
fig|6666666.230098.peg.1369 CDS CYYO01000003.1 353650 356610 1 + 2961 Predicted D-lactate dehydrogenase, Fe-S protein, FAD/FMN-containing - none -
fig|6666666.230098.peg.1370 CDS CYYO01000003.1 356644 357828 1 + 1185 N-acetylglucosamine related transporter, NagX - none -
fig|6666666.230098.peg.1371 CDS CYYO01000003.1 357958 358797 1 + 840 FIG00404118: hypothetical protein - none -
fig|6666666.230098.peg.1372 CDS CYYO01000003.1 358844 359653 2 + 810 N-acetylmuramic acid 6-phosphate etherase - none -
fig|6666666.230098.peg.1373 CDS CYYO01000003.1 359682 361577 3 + 1896 Beta-lactamase (Cephalosporinase) (EC 3.5.2.6) Beta-lactamase
fig|6666666.230098.peg.1374 CDS CYYO01000003.1 362366 361722 -2 - 645 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase
fig|6666666.230098.peg.1375 CDS CYYO01000003.1 363976 362435 -1 - 1542 Glycyl-tRNA synthetase (EC 6.1.1.14) Glycyl-tRNA synthetase containing cluster;
tRNA aminoacylation, Gly
fig|6666666.230098.peg.1376 CDS CYYO01000003.1 366551 364215 -2 - 2337 Beta-glucosidase (EC 3.2.1.21) - none -
fig|6666666.230098.peg.1377 CDS CYYO01000003.1 367761 366565 -3 - 1197 Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8) D-Galacturonate and D-Glucuronate Utilization;
Xylose utilization
fig|6666666.230098.peg.1378 CDS CYYO01000003.1 369338 367797 -2 - 1542 hypothetical protein-signal peptide and transmembrane prediction - none -
fig|6666666.230098.peg.1379 CDS CYYO01000003.1 370907 369360 -2 - 1548 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.230098.peg.1380 CDS CYYO01000003.1 373984 370928 -1 - 3057 SusC, outer membrane protein involved in starch binding Cellulosome
fig|6666666.230098.peg.1381 CDS CYYO01000003.1 375075 374059 -3 - 1017 L-rhamnose-proton symporter - none -
fig|6666666.230098.peg.1382 CDS CYYO01000003.1 376535 375111 -2 - 1425 Unknown pentose isomerase TM0951 - none -
fig|6666666.230098.peg.1383 CDS CYYO01000003.1 378052 376574 -1 - 1479 Glycerol kinase (EC 2.7.1.30) Glycerol and Glycerol-3-phosphate Uptake and Utilization;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.230098.peg.1384 CDS CYYO01000003.1 379024 378101 -1 - 924 Transketolase, C-terminal section (EC 2.2.1.1) Pentose phosphate pathway
fig|6666666.230098.peg.1385 CDS CYYO01000003.1 379859 379026 -2 - 834 Transketolase, N-terminal section (EC 2.2.1.1) Pentose phosphate pathway
fig|6666666.230098.peg.1386 CDS CYYO01000003.1 380114 380728 2 + 615 3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) / GTP cyclohydrolase II (EC 3.5.4.25) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster;
Riboflavin synthesis cluster;
riboflavin to FAD
fig|6666666.230098.peg.1387 CDS CYYO01000003.1 380736 381497 3 + 762 Unknown pentose utilization regulator, DeoR family - none -
fig|6666666.230098.peg.1388 CDS CYYO01000003.1 383103 381577 -3 - 1527 MutS-related protein, family 1 DNA repair, bacterial MutL-MutS system
fig|6666666.230098.peg.1389 CDS CYYO01000003.1 383242 384345 1 + 1104 Endo-1,4-beta-xylanase D - none -
fig|6666666.230098.peg.1390 CDS CYYO01000003.1 386424 384427 -3 - 1998 Beta-galactosidase (EC 3.2.1.23) Galactosylceramide and Sulfatide metabolism;
Lactose and Galactose Uptake and Utilization;
Lactose utilization
fig|6666666.230098.peg.1391 CDS CYYO01000003.1 386669 390679 2 + 4011 DNA-binding response regulator, AraC family - none -
fig|6666666.230098.peg.1392 CDS CYYO01000003.1 390799 393975 1 + 3177 TonB family protein / TonB-dependent receptor Ton and Tol transport systems
fig|6666666.230098.peg.1393 CDS CYYO01000003.1 394085 395641 2 + 1557 FIG00415907: hypothetical protein - none -
fig|6666666.230098.peg.1394 CDS CYYO01000003.1 395682 397139 3 + 1458 FIG00412418: hypothetical protein - none -
fig|6666666.230098.peg.1395 CDS CYYO01000003.1 397278 398711 3 + 1434 endo-beta-1,4-glucanase (celulase B) - none -
fig|6666666.230098.peg.1396 CDS CYYO01000003.1 398743 400815 1 + 2073 Alpha-glucosidase (EC 3.2.1.20) D-Galacturonate and D-Glucuronate Utilization;
Maltose and Maltodextrin Utilization
fig|6666666.230098.peg.1397 CDS CYYO01000003.1 400812 404537 3 + 3726 Beta-galactosidase (EC 3.2.1.23) Galactosylceramide and Sulfatide metabolism;
Lactose and Galactose Uptake and Utilization;
Lactose utilization
fig|6666666.230098.peg.1398 CDS CYYO01000003.1 404543 406624 2 + 2082 Beta-galactosidase (EC 3.2.1.23) Galactosylceramide and Sulfatide metabolism;
Lactose and Galactose Uptake and Utilization;
Lactose utilization
fig|6666666.230098.peg.1399 CDS CYYO01000003.1 406647 409754 3 + 3108 Beta-galactosidase (EC 3.2.1.23) Galactosylceramide and Sulfatide metabolism;
Lactose and Galactose Uptake and Utilization;
Lactose utilization
fig|6666666.230098.peg.1400 CDS CYYO01000003.1 409812 411428 3 + 1617 Alpha-L-fucosidase (EC 3.2.1.51) - none -
fig|6666666.230098.peg.1401 CDS CYYO01000003.1 411443 413833 2 + 2391 Alpha-xylosidase (EC 3.2.1.-) Xylose utilization
fig|6666666.230098.peg.1402 CDS CYYO01000003.1 413883 416723 3 + 2841 Sialic acid-specific 9-O-acetylesterase - none -
fig|6666666.230098.peg.1403 CDS CYYO01000003.1 416852 417007 2 + 156 hypothetical protein - none -
fig|6666666.230098.peg.1404 CDS CYYO01000003.1 417145 419826 1 + 2682 Topoisomerase IV subunit A (EC 5.99.1.-) DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.230098.peg.1405 CDS CYYO01000003.1 419888 420742 2 + 855 FIG00415187: hypothetical protein - none -
fig|6666666.230098.peg.1406 CDS CYYO01000003.1 420754 421803 1 + 1050 Carboxyl-terminal protease-related protein - none -
fig|6666666.230098.peg.1407 CDS CYYO01000003.1 422130 424994 3 + 2865 FIG00402975: hypothetical protein - none -
fig|6666666.230098.peg.1408 CDS CYYO01000003.1 425203 428196 1 + 2994 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.230098.peg.1409 CDS CYYO01000003.1 428215 429765 1 + 1551 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.230098.peg.1410 CDS CYYO01000003.1 429778 431877 1 + 2100 Arabinan endo-1,5-alpha-L-arabinosidase A - none -
fig|6666666.230098.peg.1411 CDS CYYO01000003.1 431910 433286 3 + 1377 FIG01018870: hypothetical protein - none -
fig|6666666.230098.peg.1412 CDS CYYO01000003.1 433421 435712 2 + 2292 Periplasmic beta-glucosidase (EC 3.2.1.21) - none -
fig|6666666.230098.peg.1413 CDS CYYO01000003.1 435850 438885 1 + 3036 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.230098.peg.1414 CDS CYYO01000003.1 438966 440486 3 + 1521 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.230098.peg.1415 CDS CYYO01000003.1 440758 443088 1 + 2331 Periplasmic beta-glucosidase (EC 3.2.1.21) - none -
fig|6666666.230098.peg.1416 CDS CYYO01000003.1 443128 443991 1 + 864 endonuclease/exonuclease/phosphatase family protein - none -
fig|6666666.230098.peg.1417 CDS CYYO01000003.1 444006 445370 3 + 1365 Periplasmic beta-glucosidase (EC 3.2.1.21) - none -
fig|6666666.230098.peg.1418 CDS CYYO01000003.1 447989 445458 -2 - 2532 putative TonB-dependent receptor - none -
fig|6666666.230098.peg.1419 CDS CYYO01000003.1 449435 448140 -2 - 1296 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) Ammonia assimilation;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.230098.peg.1420 CDS CYYO01000003.1 449937 449470 -3 - 468 FIG00937621: hypothetical protein - none -
fig|6666666.230098.peg.1421 CDS CYYO01000003.1 450091 449957 -1 - 135 hypothetical protein - none -
fig|6666666.230098.peg.1422 CDS CYYO01000003.1 451287 450172 -3 - 1116 Peptide chain release factor 2; programmed frameshift-containing Programmed frameshift;
Programmed frameshift;
Translation termination factors bacterial
fig|6666666.230098.peg.1423 CDS CYYO01000003.1 452079 451402 -3 - 678 FIG00407210: hypothetical protein - none -
fig|6666666.230098.peg.1424 CDS CYYO01000003.1 453554 452151 -2 - 1404 FIG00897321: hypothetical protein - none -
fig|6666666.230098.peg.1425 CDS CYYO01000003.1 454786 453560 -1 - 1227 N-acetylglucosamine related transporter, NagX - none -
fig|6666666.230098.peg.1426 CDS CYYO01000003.1 457248 454798 -3 - 2451 glycosyl hydrolase, family 9 - none -
fig|6666666.230098.peg.1427 CDS CYYO01000003.1 458419 457334 -1 - 1086 FIG00406036: hypothetical protein - none -
fig|6666666.230098.peg.1428 CDS CYYO01000003.1 460149 458548 -3 - 1602 hypothetical protein - none -
fig|6666666.230098.peg.1429 CDS CYYO01000003.1 463239 460165 -3 - 3075 TonB-dependent receptor Ton and Tol transport systems
fig|6666666.230098.peg.1430 CDS CYYO01000003.1 463791 463678 -3 - 114 hypothetical protein - none -
fig|6666666.230098.peg.1431 CDS CYYO01000003.1 466007 464202 -2 - 1806 O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26) - none -
fig|6666666.230098.peg.1432 CDS CYYO01000003.1 466219 466842 1 + 624 FIG00414346: hypothetical protein - none -
fig|6666666.230098.peg.1433 CDS CYYO01000003.1 466933 468003 1 + 1071 Acetylornithine deacetylase (EC 3.5.1.16) Arginine Biosynthesis -- gjo;
Arginine Biosynthesis extended
fig|6666666.230098.peg.1434 CDS CYYO01000003.1 469312 468011 -1 - 1302 TolA protein Ton and Tol transport systems
fig|6666666.230098.peg.1435 CDS CYYO01000003.1 469949 469362 -2 - 588 FIG00406555: hypothetical protein - none -
fig|6666666.230098.peg.1436 CDS CYYO01000003.1 471777 469927 -3 - 1851 FIG00898077: hypothetical protein - none -
fig|6666666.230098.peg.1437 CDS CYYO01000003.1 472261 471824 -1 - 438 Deoxyuridine 5@1-triphosphate nucleotidohydrolase (EC 3.6.1.23) Housecleaning nucleoside triphosphate pyrophosphatases;
Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.230098.peg.1438 CDS CYYO01000003.1 472474 473799 1 + 1326 Deoxyguanosinetriphosphate triphosphohydrolase (EC 3.1.5.1) - none -
fig|6666666.230098.peg.1439 CDS CYYO01000003.1 474805 473828 -1 - 978 Hemolysin A - none -
fig|6666666.230098.peg.1440 CDS CYYO01000003.1 475667 474849 -2 - 819 Hemolysin A - none -
fig|6666666.230098.peg.1441 CDS CYYO01000003.1 475883 476386 2 + 504 RNA polymerase ECF-type sigma factor - none -
fig|6666666.230098.peg.1442 CDS CYYO01000003.1 476763 477266 3 + 504 RNA polymerase ECF-type sigma factor - none -
fig|6666666.230098.peg.1443 CDS CYYO01000003.1 477393 478856 3 + 1464 FIG00937589: hypothetical protein - none -
fig|6666666.230098.peg.1444 CDS CYYO01000003.1 479279 479040 -2 - 240 hypothetical protein - none -
fig|6666666.230098.peg.1445 CDS CYYO01000003.1 479378 479854 2 + 477 Cell division protein MraZ 16S rRNA modification within P site of ribosome;
Bacterial Cell Division;
Bacterial Cytoskeleton
fig|6666666.230098.peg.1446 CDS CYYO01000003.1 479862 480785 3 + 924 rRNA small subunit methyltransferase H 16S rRNA modification within P site of ribosome;
Bacterial Cell Division
fig|6666666.230098.peg.1447 CDS CYYO01000003.1 480795 481145 3 + 351 Cell division protein FtsL 16S rRNA modification within P site of ribosome;
Bacterial Cell Division;
Bacterial Cytoskeleton;
Stationary phase repair cluster
fig|6666666.230098.peg.1448 CDS CYYO01000003.1 481233 483371 3 + 2139 Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129) 16S rRNA modification within P site of ribosome;
Bacterial Cell Division;
Bacterial Cytoskeleton;
CBSS-83331.1.peg.3039;
Peptidoglycan Biosynthesis
fig|6666666.230098.peg.1449 CDS CYYO01000003.1 483417 484865 3 + 1449 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo
fig|6666666.230098.peg.1450 CDS CYYO01000003.1 484980 486248 3 + 1269 Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC 2.7.8.13) Peptidoglycan Biosynthesis
fig|6666666.230098.peg.1451 CDS CYYO01000003.1 486354 487688 3 + 1335 UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC 6.3.2.9) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo
fig|6666666.230098.peg.1452 CDS CYYO01000003.1 487780 489096 1 + 1317 Cell division protein FtsW Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ
fig|6666666.230098.peg.1453 CDS CYYO01000003.1 489145 490425 1 + 1281 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) Peptidoglycan Biosynthesis;
cell division core of larger cluster
fig|6666666.230098.peg.1454 CDS CYYO01000003.1 490495 491940 1 + 1446 UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8) Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo;
cell division cluster containing FtsQ
fig|6666666.230098.peg.1455 CDS CYYO01000003.1 491933 492670 2 + 738 Cell division protein FtsQ Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ;
cell division core of larger cluster
fig|6666666.230098.peg.1456 CDS CYYO01000003.1 492754 494187 1 + 1434 Cell division protein FtsA Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ;
cell division core of larger cluster
fig|6666666.230098.peg.1457 CDS CYYO01000003.1 494221 495534 1 + 1314 Cell division protein FtsZ (EC 3.4.24.-) Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ;
cell division core of larger cluster
fig|6666666.230098.peg.1458 CDS CYYO01000003.1 495604 496053 1 + 450 Transamidase GatB domain protein Macromolecular synthesis operon
fig|6666666.230098.peg.1459 CDS CYYO01000003.1 497119 496391 -1 - 729 DNA recombination and repair protein RecO DNA repair, bacterial RecFOR pathway;
Glycyl-tRNA synthetase containing cluster
fig|6666666.230098.peg.1460 CDS CYYO01000003.1 497658 497774 3 + 117 SSU ribosomal protein S20p Ribosome SSU bacterial
fig|6666666.230098.peg.1461 CDS CYYO01000003.1 497980 499941 1 + 1962 DNA gyrase subunit B (EC 5.99.1.3) Cell Division Subsystem including YidCD;
DNA gyrase subunits;
DNA replication cluster 1;
DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.230098.peg.1462 CDS CYYO01000003.1 500654 500073 -2 - 582 FIG00937271: hypothetical protein - none -
fig|6666666.230098.peg.1463 CDS CYYO01000003.1 502260 500767 -3 - 1494 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis;
Phosphoglycerate mutase protein family
fig|6666666.230098.peg.1464 CDS CYYO01000003.1 502549 503475 1 + 927 Magnesium and cobalt transport protein CorA Magnesium transport
fig|6666666.230098.peg.1465 CDS CYYO01000003.1 504090 503482 -3 - 609 Ribonuclease HII (EC 3.1.26.4) Conserved gene cluster associated with Met-tRNA formyltransferase;
Ribonuclease H
fig|6666666.230098.peg.1466 CDS CYYO01000003.1 504257 505810 2 + 1554 FIG00404818: hypothetical protein - none -
fig|6666666.230098.peg.1467 CDS CYYO01000003.1 506473 506676 1 + 204 hypothetical protein - none -
fig|6666666.230098.peg.1468 CDS CYYO01000003.1 507003 510125 3 + 3123 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.230098.peg.1469 CDS CYYO01000003.1 510157 511770 1 + 1614 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.230098.peg.1470 CDS CYYO01000003.1 511902 512180 3 + 279 FIG00407176: hypothetical protein - none -
fig|6666666.230098.peg.1471 CDS CYYO01000003.1 512177 512779 2 + 603 putative surface protein - none -
fig|6666666.230098.peg.1472 CDS CYYO01000003.1 512799 515942 3 + 3144 Beta-galactosidase (EC 3.2.1.23) Galactosylceramide and Sulfatide metabolism;
Lactose and Galactose Uptake and Utilization;
Lactose utilization
fig|6666666.230098.peg.1473 CDS CYYO01000003.1 516035 517891 2 + 1857 Putative isomerase - none -
fig|6666666.230098.peg.1474 CDS CYYO01000003.1 519128 518046 -2 - 1083 Butyrate kinase (EC 2.7.2.7) - none -
fig|6666666.230098.peg.1475 CDS CYYO01000003.1 520093 519173 -1 - 921 phosphotransbutyrylase (EC 2.3.1.19) - none -
fig|6666666.230098.peg.1476 CDS CYYO01000003.1 520352 521290 2 + 939 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) Metallocarboxypeptidases (EC 3.4.17.-);
Murein Hydrolases;
Recycling of Peptidoglycan Amino Acids
fig|6666666.230098.peg.1477 CDS CYYO01000003.1 521287 522300 1 + 1014 Aminopeptidase Y (Arg, Lys, Leu preference) (EC 3.4.11.15) Aminopeptidases (EC 3.4.11.-)
fig|6666666.230098.peg.1478 CDS CYYO01000003.1 522335 522760 2 + 426 Sulfur acceptor protein SufE for iron-sulfur cluster assembly Iron-sulfur cluster assembly
fig|6666666.230098.peg.1479 CDS CYYO01000003.1 523094 523276 2 + 183 hypothetical protein - none -
fig|6666666.230098.peg.1480 CDS CYYO01000004.1 568 744 1 + 177 hypothetical protein - none -
fig|6666666.230098.peg.1481 CDS CYYO01000004.1 1104 961 -3 - 144 hypothetical protein - none -
fig|6666666.230098.peg.1482 CDS CYYO01000004.1 4259 1398 -2 - 2862 hypothetical protein - none -
fig|6666666.230098.peg.1483 CDS CYYO01000004.1 6580 5816 -1 - 765 FIG00412745: hypothetical protein - none -
fig|6666666.230098.peg.1484 CDS CYYO01000004.1 8685 6586 -3 - 2100 Membrane protein containing HD superfamily hydrolase domain, YQFF ortholog CBSS-56780.10.peg.1536
fig|6666666.230098.peg.1485 CDS CYYO01000004.1 8744 10270 2 + 1527 Glutamyl-tRNA synthetase (EC 6.1.1.17) tRNA aminoacylation, Glu and Gln
fig|6666666.230098.peg.1486 CDS CYYO01000004.1 10302 11522 3 + 1221 Lipid IVA 3-deoxy-D-manno-octulosonic acid transferase (EC 2.4.99.12) [often with (EC 2.4.99.13) also] - none -
fig|6666666.230098.peg.1487 CDS CYYO01000004.1 12127 11615 -1 - 513 N-acetylglutamate synthase (EC 2.3.1.1) Arginine Biosynthesis -- gjo;
Arginine Biosynthesis extended
fig|6666666.230098.peg.1488 CDS CYYO01000004.1 13925 12132 -2 - 1794 Xaa-Pro aminopeptidase (EC 3.4.11.9) Aminopeptidases (EC 3.4.11.-)
fig|6666666.230098.peg.1489 CDS CYYO01000004.1 14205 14396 3 + 192 SSU ribosomal protein S21p Macromolecular synthesis operon;
Ribosome SSU bacterial
fig|6666666.230098.peg.1490 CDS CYYO01000004.1 14470 15354 1 + 885 Integrase, site-specific recombinase - none -
fig|6666666.230098.peg.1491 CDS CYYO01000004.1 15451 15672 1 + 222 Ribosome hibernation protein YhbH Ribosome activity modulation
fig|6666666.230098.peg.1492 CDS CYYO01000004.1 16186 17370 1 + 1185 Translation elongation factor Tu Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Translation elongation factors bacterial;
Universal GTPases
fig|6666666.230098.peg.1493 CDS CYYO01000004.1 17514 17702 3 + 189 Preprotein translocase subunit SecE (TC 3.A.5.1.1) LSU ribosomal proteins cluster
fig|6666666.230098.peg.1494 CDS CYYO01000004.1 17715 18257 3 + 543 Transcription antitermination protein NusG LSU ribosomal proteins cluster;
Transcription factors bacterial
fig|6666666.230098.peg.1495 CDS CYYO01000004.1 18317 18760 2 + 444 LSU ribosomal protein L11p (L12e) LSU ribosomal proteins cluster
fig|6666666.230098.peg.1496 CDS CYYO01000004.1 18776 19474 2 + 699 LSU ribosomal protein L1p (L10Ae) LSU ribosomal proteins cluster
fig|6666666.230098.peg.1497 CDS CYYO01000004.1 19490 20011 2 + 522 LSU ribosomal protein L10p (P0) LSU ribosomal proteins cluster
fig|6666666.230098.peg.1498 CDS CYYO01000004.1 20073 20450 3 + 378 LSU ribosomal protein L7/L12 (P1/P2) LSU ribosomal proteins cluster
fig|6666666.230098.peg.1499 CDS CYYO01000004.1 20556 24368 3 + 3813 DNA-directed RNA polymerase beta subunit (EC 2.7.7.6) Mycobacterium virulence operon involved in DNA transcription;
RNA polymerase bacterial
fig|6666666.230098.peg.1500 CDS CYYO01000004.1 24477 28772 3 + 4296 DNA-directed RNA polymerase beta@1 subunit (EC 2.7.7.6) Mycobacterium virulence operon involved in DNA transcription;
RNA polymerase bacterial
fig|6666666.230098.peg.1501 CDS CYYO01000004.1 29041 29352 1 + 312 FIG00649583: hypothetical protein - none -
fig|6666666.230098.peg.1502 CDS CYYO01000004.1 29614 29871 1 + 258 SSU ribosomal protein S12p (S23e) Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Ribosomal protein S12p Asp methylthiotransferase;
Ribosome SSU bacterial
fig|6666666.230098.peg.1503 CDS CYYO01000004.1 30027 30503 3 + 477 SSU ribosomal protein S7p (S5e) Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Ribosome SSU bacterial
fig|6666666.230098.peg.1504 CDS CYYO01000004.1 30604 32679 1 + 2076 Translation elongation factor G Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Tetracycline resistance, ribosome protection type;
Tetracycline resistance, ribosome protection type, too;
Translation elongation factor G family;
Translation elongation factors bacterial;
Universal GTPases
fig|6666666.230098.peg.1505 CDS CYYO01000004.1 32767 33072 1 + 306 SSU ribosomal protein S10p (S20e) Ribosome SSU bacterial
fig|6666666.230098.peg.1506 CDS CYYO01000004.1 33092 33709 2 + 618 LSU ribosomal protein L3p (L3e) - none -
fig|6666666.230098.peg.1507 CDS CYYO01000004.1 33829 34335 1 + 507 LSU ribosomal protein L4p (L1e) - none -
fig|6666666.230098.peg.1508 CDS CYYO01000004.1 34376 34645 2 + 270 LSU ribosomal protein L23p (L23Ae) - none -
fig|6666666.230098.peg.1509 CDS CYYO01000004.1 34651 35475 1 + 825 LSU ribosomal protein L2p (L8e) - none -
fig|6666666.230098.peg.1510 CDS CYYO01000004.1 35559 35765 3 + 207 SSU ribosomal protein S19p (S15e) Ribosome SSU bacterial
fig|6666666.230098.peg.1511 CDS CYYO01000004.1 35802 36212 3 + 411 LSU ribosomal protein L22p (L17e) - none -
fig|6666666.230098.peg.1512 CDS CYYO01000004.1 36218 36949 2 + 732 SSU ribosomal protein S3p (S3e) Ribosome SSU bacterial
fig|6666666.230098.peg.1513 CDS CYYO01000004.1 36971 37405 2 + 435 LSU ribosomal protein L16p (L10e) - none -
fig|6666666.230098.peg.1514 CDS CYYO01000004.1 37411 37608 1 + 198 LSU ribosomal protein L29p (L35e) - none -
fig|6666666.230098.peg.1515 CDS CYYO01000004.1 37617 37874 3 + 258 SSU ribosomal protein S17p (S11e) Ribosome SSU bacterial
fig|6666666.230098.peg.1516 CDS CYYO01000004.1 38045 38242 2 + 198 LSU ribosomal protein L14p (L23e) - none -
fig|6666666.230098.peg.1517 CDS CYYO01000004.1 38263 38583 1 + 321 LSU ribosomal protein L24p (L26e) - none -
fig|6666666.230098.peg.1518 CDS CYYO01000004.1 38583 39140 3 + 558 LSU ribosomal protein L5p (L11e) - none -
fig|6666666.230098.peg.1519 CDS CYYO01000004.1 39145 39444 1 + 300 SSU ribosomal protein S14p (S29e) @ SSU ribosomal protein S14p (S29e), zinc-independent Ribosome SSU bacterial;
Ribosome SSU bacterial
fig|6666666.230098.peg.1520 CDS CYYO01000004.1 39566 39895 2 + 330 SSU ribosomal protein S8p (S15Ae) Ribosome SSU bacterial
fig|6666666.230098.peg.1521 CDS CYYO01000004.1 39911 40480 2 + 570 LSU ribosomal protein L6p (L9e) - none -
fig|6666666.230098.peg.1522 CDS CYYO01000004.1 40582 40845 1 + 264 LSU ribosomal protein L18p (L5e) - none -
fig|6666666.230098.peg.1523 CDS CYYO01000004.1 40851 41369 3 + 519 SSU ribosomal protein S5p (S2e) Ribosomal protein S5p acylation;
Ribosome SSU bacterial
fig|6666666.230098.peg.1524 CDS CYYO01000004.1 41588 42034 2 + 447 LSU ribosomal protein L15p (L27Ae) - none -
fig|6666666.230098.peg.1525 CDS CYYO01000004.1 42039 43382 3 + 1344 Preprotein translocase secY subunit (TC 3.A.5.1.1) - none -
fig|6666666.230098.peg.1526 CDS CYYO01000004.1 43396 44196 1 + 801 Methionine aminopeptidase (EC 3.4.11.18) CBSS-312309.3.peg.1965;
Translation termination factors bacterial
fig|6666666.230098.peg.1527 CDS CYYO01000004.1 44206 44424 1 + 219 Translation initiation factor 1 Translation initiation factors bacterial
fig|6666666.230098.peg.1528 CDS CYYO01000004.1 44687 44965 2 + 279 SSU ribosomal protein S13p (S18e) Ribosome SSU bacterial
fig|6666666.230098.peg.1529 CDS CYYO01000004.1 44977 45366 1 + 390 SSU ribosomal protein S11p (S14e) Ribosome SSU bacterial
fig|6666666.230098.peg.1530 CDS CYYO01000004.1 45484 46089 1 + 606 SSU ribosomal protein S4p (S9e) Ribosome SSU bacterial
fig|6666666.230098.peg.1531 CDS CYYO01000004.1 46101 47093 3 + 993 DNA-directed RNA polymerase alpha subunit (EC 2.7.7.6) RNA polymerase bacterial
fig|6666666.230098.peg.1532 CDS CYYO01000004.1 47154 47600 3 + 447 LSU ribosomal protein L17p - none -
fig|6666666.230098.peg.1533 CDS CYYO01000004.1 47772 48155 3 + 384 FIG00404648: hypothetical protein - none -
fig|6666666.230098.peg.1534 CDS CYYO01000004.1 48265 48804 1 + 540 FIG00404196: hypothetical protein - none -
fig|6666666.230098.peg.1535 CDS CYYO01000004.1 50743 48845 -1 - 1899 MutS-related protein, family 1 DNA repair, bacterial MutL-MutS system
fig|6666666.230098.peg.1536 CDS CYYO01000004.1 50819 51514 2 + 696 FIG00405371: hypothetical protein - none -
fig|6666666.230098.peg.1537 CDS CYYO01000004.1 51535 51978 1 + 444 hypothetical protein - none -
fig|6666666.230098.peg.1538 CDS CYYO01000004.1 52826 52206 -2 - 621 putative surface protein - none -
fig|6666666.230098.peg.1539 CDS CYYO01000004.1 53101 52823 -1 - 279 FIG00417315: hypothetical protein - none -
fig|6666666.230098.peg.1540 CDS CYYO01000004.1 53570 54193 2 + 624 FIG00406490: hypothetical protein - none -
fig|6666666.230098.peg.1541 CDS CYYO01000004.1 54331 56313 1 + 1983 Urocanate hydratase (EC 4.2.1.49) Histidine Degradation
fig|6666666.230098.peg.1542 CDS CYYO01000004.1 56460 57350 3 + 891 Glutamate formiminotransferase (EC 2.1.2.5) @ Glutamate formyltransferase 5-FCL-like protein;
Histidine Degradation
fig|6666666.230098.peg.1543 CDS CYYO01000004.1 57414 58667 3 + 1254 Imidazolonepropionase (EC 3.5.2.7) Histidine Degradation
fig|6666666.230098.peg.1544 CDS CYYO01000004.1 58709 59338 2 + 630 Formiminotetrahydrofolate cyclodeaminase (EC 4.3.1.4) 5-FCL-like protein;
One-carbon metabolism by tetrahydropterines;
Serine-glyoxylate cycle
fig|6666666.230098.peg.1545 CDS CYYO01000004.1 59335 60831 1 + 1497 Histidine ammonia-lyase (EC 4.3.1.3) Histidine Degradation
fig|6666666.230098.peg.1546 CDS CYYO01000004.1 61092 61649 3 + 558 Transcriptional regulator, TetR family - none -
fig|6666666.230098.peg.1547 CDS CYYO01000004.1 61716 63035 3 + 1320 Outer membrane efflux protein precursor - none -
fig|6666666.230098.peg.1548 CDS CYYO01000004.1 63046 64089 1 + 1044 Probable Co/Zn/Cd efflux system membrane fusion protein Cobalt-zinc-cadmium resistance
fig|6666666.230098.peg.1549 CDS CYYO01000004.1 64220 67354 2 + 3135 Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA Cobalt-zinc-cadmium resistance;
Cobalt-zinc-cadmium resistance
fig|6666666.230098.peg.1550 CDS CYYO01000004.1 67454 67699 2 + 246 FIG00936253: hypothetical protein - none -
fig|6666666.230098.peg.1551 CDS CYYO01000004.1 67823 69202 2 + 1380 putative periplasmic protein - none -
fig|6666666.230098.peg.1552 CDS CYYO01000004.1 69416 69225 -2 - 192 hypothetical protein - none -
fig|6666666.230098.peg.1553 CDS CYYO01000004.1 69417 70121 3 + 705 putative periplasmic protein - none -
fig|6666666.230098.peg.1554 CDS CYYO01000004.1 70108 71616 1 + 1509 Probable poly(beta-D-mannuronate) O-acetylase (EC 2.3.1.-) - none -
fig|6666666.230098.peg.1555 CDS CYYO01000004.1 73284 71617 -3 - 1668 Beta-hexosaminidase (EC 3.2.1.52) - none -
fig|6666666.230098.peg.1556 CDS CYYO01000004.1 74211 73375 -3 - 837 Transcriptional regulator, AraC family - none -
fig|6666666.230098.peg.1557 CDS CYYO01000004.1 74421 75518 3 + 1098 Multidrug resistance protein - none -
fig|6666666.230098.peg.1558 CDS CYYO01000004.1 75539 78730 2 + 3192 RND efflux system, inner membrane transporter CmeB Multidrug Resistance Efflux Pumps
fig|6666666.230098.peg.1559 CDS CYYO01000004.1 78762 80162 3 + 1401 Outer membrane protein oprM - none -
fig|6666666.230098.peg.1560 CDS CYYO01000004.1 80326 80201 -1 - 126 hypothetical protein - none -
fig|6666666.230098.peg.1561 CDS CYYO01000004.1 80349 81068 3 + 720 FIG00402811: hypothetical protein - none -
fig|6666666.230098.peg.1562 CDS CYYO01000004.1 81248 81102 -2 - 147 hypothetical protein - none -
fig|6666666.230098.peg.1563 CDS CYYO01000004.1 81313 81921 1 + 609 putative DNA-binding protein - none -
fig|6666666.230098.peg.1564 CDS CYYO01000004.1 82195 82055 -1 - 141 hypothetical protein - none -
fig|6666666.230098.peg.1565 CDS CYYO01000004.1 87923 88159 2 + 237 hypothetical protein - none -
fig|6666666.230098.peg.1566 CDS CYYO01000004.1 88526 90022 2 + 1497 2-isopropylmalate synthase (EC 2.3.3.13) Branched-Chain Amino Acid Biosynthesis;
Leucine Biosynthesis
fig|6666666.230098.peg.1567 CDS CYYO01000004.1 90065 91459 2 + 1395 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) Branched-Chain Amino Acid Biosynthesis;
Leucine Biosynthesis
fig|6666666.230098.peg.1568 CDS CYYO01000004.1 91569 92168 3 + 600 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) Branched-Chain Amino Acid Biosynthesis;
Leucine Biosynthesis
fig|6666666.230098.peg.1569 CDS CYYO01000004.1 92158 93699 1 + 1542 (R)-citramalate synthase (EC 2.3.1.182) Branched-Chain Amino Acid Biosynthesis
fig|6666666.230098.peg.1570 CDS CYYO01000004.1 93712 93969 1 + 258 FIG00415981: hypothetical protein - none -
fig|6666666.230098.peg.1571 CDS CYYO01000004.1 93959 95020 2 + 1062 3-isopropylmalate dehydrogenase (EC 1.1.1.85) Branched-Chain Amino Acid Biosynthesis;
Leucine Biosynthesis
fig|6666666.230098.peg.1572 CDS CYYO01000004.1 95342 95229 -2 - 114 hypothetical protein - none -
fig|6666666.230098.peg.1573 CDS CYYO01000004.1 95430 96380 3 + 951 Cysteine synthase (EC 2.5.1.47) Cysteine Biosynthesis;
Methionine Biosynthesis
fig|6666666.230098.peg.1574 CDS CYYO01000004.1 96396 97247 3 + 852 TPR-repeat-containing protein - none -
fig|6666666.230098.peg.1575 CDS CYYO01000004.1 99062 97251 -2 - 1812 ATP-dependent DNA helicase RecQ DNA repair, bacterial RecFOR pathway
fig|6666666.230098.peg.1576 CDS CYYO01000004.1 99344 99817 2 + 474 Transcriptional regulator, AraC/XylS family - none -
fig|6666666.230098.peg.1577 CDS CYYO01000004.1 99940 101967 1 + 2028 Dipeptidyl-peptidase III (EC 3.4.14.4) - none -
fig|6666666.230098.peg.1578 CDS CYYO01000004.1 101974 102648 1 + 675 Peptidase, M49 family - none -
fig|6666666.230098.peg.1579 CDS CYYO01000004.1 102735 102616 -3 - 120 hypothetical protein - none -
fig|6666666.230098.peg.1580 CDS CYYO01000004.1 102752 103264 2 + 513 Ferric uptake regulation protein FUR Bacterial RNA-metabolizing Zn-dependent hydrolases;
Oxidative stress
fig|6666666.230098.peg.1581 CDS CYYO01000004.1 103261 104532 1 + 1272 Adenylosuccinate synthetase (EC 6.3.4.4) Purine conversions
fig|6666666.230098.peg.1582 CDS CYYO01000004.1 104650 105939 1 + 1290 Alpha-L-fucosidase (EC 3.2.1.51) - none -
fig|6666666.230098.peg.1583 CDS CYYO01000004.1 106061 105948 -2 - 114 hypothetical protein - none -
fig|6666666.230098.peg.1584 CDS CYYO01000004.1 106081 106776 1 + 696 FIG00897182: hypothetical protein - none -
fig|6666666.230098.peg.1585 CDS CYYO01000004.1 108045 106882 -3 - 1164 hypothetical protein - none -
fig|6666666.230098.peg.1586 CDS CYYO01000004.1 108178 109539 1 + 1362 Histidyl-tRNA synthetase (EC 6.1.1.21) tRNA aminoacylation, His
fig|6666666.230098.peg.1587 CDS CYYO01000004.1 109638 109844 3 + 207 FIG00411025: hypothetical protein - none -
fig|6666666.230098.peg.1588 CDS CYYO01000004.1 109893 110654 3 + 762 Ferredoxin Soluble cytochromes and functionally related electron carriers
fig|6666666.230098.peg.1589 CDS CYYO01000004.1 111436 110624 -1 - 813 FIG00406457: hypothetical protein - none -
fig|6666666.230098.peg.1590 CDS CYYO01000004.1 111662 111934 2 + 273 Heat shock protein 60 family co-chaperone GroES GroEL GroES
fig|6666666.230098.peg.1591 CDS CYYO01000004.1 111972 113609 3 + 1638 Heat shock protein 60 family chaperone GroEL GroEL GroES
fig|6666666.230098.peg.1592 CDS CYYO01000004.1 113864 114082 2 + 219 hypothetical protein - none -
fig|6666666.230098.peg.1593 CDS CYYO01000004.1 114093 114221 3 + 129 hypothetical protein - none -
fig|6666666.230098.peg.1594 CDS CYYO01000004.1 114233 115258 2 + 1026 Low-specificity L-threonine aldolase (EC 4.1.2.48) - none -
fig|6666666.230098.peg.1595 CDS CYYO01000004.1 117940 115430 -1 - 2511 Endoglucanase D precursor (EC 3.2.1.4) - none -
fig|6666666.230098.peg.1596 CDS CYYO01000004.1 118249 119217 1 + 969 DnaJ-class molecular chaperone CbpA Protein chaperones
fig|6666666.230098.peg.1597 CDS CYYO01000004.1 119217 119528 3 + 312 FIG00403615: hypothetical protein - none -
fig|6666666.230098.peg.1598 CDS CYYO01000004.1 122237 121416 -2 - 822 Regulatory sensor-transducer, BlaR1/MecR1 family / TonB family protein - none -
fig|6666666.230098.peg.1599 CDS CYYO01000004.1 123271 122252 -1 - 1020 Electron transfer flavoprotein, alpha subunit - none -
fig|6666666.230098.peg.1600 CDS CYYO01000004.1 124169 123276 -2 - 894 Electron transfer flavoprotein, beta subunit - none -
fig|6666666.230098.peg.1601 CDS CYYO01000004.1 124506 126266 3 + 1761 1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis;
Pyridoxin (Vitamin B6) Biosynthesis;
Thiamin biosynthesis
fig|6666666.230098.peg.1602 CDS CYYO01000004.1 127513 126311 -1 - 1203 Aminopeptidase C (EC 3.4.22.40) Protein degradation
fig|6666666.230098.peg.1603 CDS CYYO01000004.1 127606 128457 1 + 852 Patatin-like phospholipase - none -
fig|6666666.230098.peg.1604 CDS CYYO01000004.1 128716 131787 1 + 3072 SusC, outer membrane protein involved in starch binding Cellulosome
fig|6666666.230098.peg.1605 CDS CYYO01000004.1 131807 133591 2 + 1785 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.230098.peg.1606 CDS CYYO01000004.1 133665 135800 3 + 2136 Sucrose-6-phosphate hydrolase (EC 3.2.1.B3) - none -
fig|6666666.230098.peg.1607 CDS CYYO01000004.1 135800 137284 2 + 1485 Sucrose-6-phosphate hydrolase (EC 3.2.1.B3) - none -
fig|6666666.230098.peg.1608 CDS CYYO01000004.1 137281 139353 1 + 2073 hypothetical protein - none -
fig|6666666.230098.peg.1609 CDS CYYO01000004.1 139358 141538 2 + 2181 Sucrose-6-phosphate hydrolase (EC 3.2.1.B3) - none -
fig|6666666.230098.peg.1610 CDS CYYO01000004.1 141780 143486 3 + 1707 Levanase (EC 3.2.1.65) - none -
fig|6666666.230098.peg.1611 CDS CYYO01000004.1 143505 144671 3 + 1167 Predicted glucose transporter in maltodextrin utilization gene cluster Maltose and Maltodextrin Utilization
fig|6666666.230098.peg.1612 CDS CYYO01000004.1 144927 145814 3 + 888 Fructokinase (EC 2.7.1.4) Sucrose utilization
fig|6666666.230098.peg.1613 CDS CYYO01000004.1 145886 148645 2 + 2760 DNA-binding response regulator, AraC family - none -
fig|6666666.230098.peg.1614 CDS CYYO01000004.1 148896 148708 -3 - 189 FIG00416554: hypothetical protein - none -
fig|6666666.230098.peg.1615 CDS CYYO01000004.1 152544 148987 -3 - 3558 Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-) Methionine Degradation;
Pyruvate:ferredoxin oxidoreductase
fig|6666666.230098.peg.1616 CDS CYYO01000004.1 153764 152586 -2 - 1179 ATPase component BioM of energizing module of biotin ECF transporter Biotin biosynthesis
fig|6666666.230098.peg.1617 CDS CYYO01000004.1 153893 155101 2 + 1209 FIG00403009: hypothetical protein - none -
fig|6666666.230098.peg.1618 CDS CYYO01000004.1 156593 155085 -2 - 1509 COG1649 predicted glycoside hydrolase - none -
fig|6666666.230098.peg.1619 CDS CYYO01000004.1 156665 158095 2 + 1431 Carbon starvation protein A Carbon Starvation
fig|6666666.230098.peg.1620 CDS CYYO01000004.1 158095 158316 1 + 222 FIG00404951: hypothetical protein - none -
fig|6666666.230098.peg.1621 CDS CYYO01000004.1 158342 158830 2 + 489 FIG00403605: hypothetical protein - none -
fig|6666666.230098.peg.1622 CDS CYYO01000004.1 159268 158954 -1 - 315 HigA protein (antitoxin to HigB) Toxin-antitoxin replicon stabilization systems
fig|6666666.230098.peg.1623 CDS CYYO01000004.1 159642 159271 -3 - 372 FIG00417077: hypothetical protein - none -
fig|6666666.230098.peg.1624 CDS CYYO01000004.1 159781 160959 1 + 1179 Ferric siderophore transport system, periplasmic binding protein TonB Hemin transport system;
Ton and Tol transport systems
fig|6666666.230098.peg.1625 CDS CYYO01000004.1 163843 161060 -1 - 2784 Excinuclease ABC subunit A paralog in greater Bacteroides group DNA repair, UvrABC system
fig|6666666.230098.peg.1626 CDS CYYO01000004.1 164091 165977 3 + 1887 two-component system sensor histidine kinase - none -
fig|6666666.230098.peg.1627 CDS CYYO01000004.1 166018 167529 1 + 1512 COG1649 predicted glycoside hydrolase - none -
fig|6666666.230098.peg.1628 CDS CYYO01000004.1 168151 167582 -1 - 570 Chromate transport protein - none -
fig|6666666.230098.peg.1629 CDS CYYO01000004.1 168763 168215 -1 - 549 Chromate transport protein - none -
fig|6666666.230098.peg.1630 CDS CYYO01000004.1 172818 168775 -3 - 4044 DNA-binding response regulator, AraC family - none -
fig|6666666.230098.peg.1631 CDS CYYO01000004.1 176695 172991 -1 - 3705 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) De Novo Purine Biosynthesis;
De Novo Purine Biosynthesis
fig|6666666.230098.peg.1632 CDS CYYO01000004.1 176747 176869 2 + 123 hypothetical protein - none -
fig|6666666.230098.peg.1633 CDS CYYO01000004.1 179136 176884 -3 - 2253 Beta-hexosaminidase (EC 3.2.1.52) - none -
fig|6666666.230098.peg.1634 CDS CYYO01000004.1 179277 179930 3 + 654 Transporter, LysE family - none -
fig|6666666.230098.peg.1635 CDS CYYO01000004.1 179968 180513 1 + 546 FIG00937849: hypothetical protein - none -
fig|6666666.230098.peg.1636 CDS CYYO01000004.1 180574 181428 1 + 855 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.230098.peg.1637 CDS CYYO01000004.1 181450 183024 1 + 1575 Peptide chain release factor 3 Translation termination factors bacterial
fig|6666666.230098.peg.1638 CDS CYYO01000004.1 183246 183380 3 + 135 Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminal - none -
fig|6666666.230098.peg.1639 CDS CYYO01000004.1 183832 184323 1 + 492 FIG00407890: hypothetical protein - none -
fig|6666666.230098.peg.1640 CDS CYYO01000004.1 184516 184773 1 + 258 Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3) Na+ translocating decarboxylases and related biotin-dependent enzymes;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.230098.peg.1641 CDS CYYO01000004.1 184813 186651 1 + 1839 Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3) Na+ translocating decarboxylases and related biotin-dependent enzymes;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.230098.peg.1642 CDS CYYO01000004.1 186651 187886 3 + 1236 Oxaloacetate decarboxylase beta chain (EC 4.1.1.3) Na+ translocating decarboxylases and related biotin-dependent enzymes;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.230098.peg.1643 CDS CYYO01000004.1 189251 187977 -2 - 1275 Outer membrane protein assembly factor YaeT precursor Llipid A biosynthesis cluster
fig|6666666.230098.peg.1644 CDS CYYO01000004.1 192315 189286 -3 - 3030 AcrB/D/F family transporter - none -
fig|6666666.230098.peg.1645 CDS CYYO01000004.1 193409 192366 -2 - 1044 RND efflux system membrane fusion protein - none -
fig|6666666.230098.peg.1646 CDS CYYO01000004.1 195894 193576 -3 - 2319 Maltose phosphorylase (EC 2.4.1.8) / Trehalose phosphorylase (EC 2.4.1.64) Maltose and Maltodextrin Utilization;
Trehalose Biosynthesis;
Trehalose Uptake and Utilization
fig|6666666.230098.peg.1647 CDS CYYO01000004.1 197486 196119 -2 - 1368 Sugar transporter - none -
fig|6666666.230098.peg.1648 CDS CYYO01000004.1 198510 197506 -3 - 1005 Maltose operon transcriptional repressor MalR, LacI family Maltose and Maltodextrin Utilization
fig|6666666.230098.peg.1649 CDS CYYO01000004.1 198735 199901 3 + 1167 arabinogalactan endo-1,4-beta-galactosidase - none -
fig|6666666.230098.peg.1650 CDS CYYO01000004.1 200033 199920 -2 - 114 hypothetical protein - none -
fig|6666666.230098.peg.1651 CDS CYYO01000004.1 200008 202407 1 + 2400 Beta-galactosidase (EC 3.2.1.23) Galactosylceramide and Sulfatide metabolism;
Lactose and Galactose Uptake and Utilization;
Lactose utilization
fig|6666666.230098.peg.1652 CDS CYYO01000004.1 203172 206129 3 + 2958 SusC, outer membrane protein involved in starch binding Cellulosome
fig|6666666.230098.peg.1653 CDS CYYO01000004.1 206141 207760 2 + 1620 SusD, outer membrane protein Cellulosome
fig|6666666.230098.peg.1654 CDS CYYO01000004.1 207785 209395 2 + 1611 FIG00411445: hypothetical protein - none -
fig|6666666.230098.peg.1655 CDS CYYO01000004.1 209476 210801 1 + 1326 Sucrose phosphorylase (EC 2.4.1.7) Sucrose utilization
fig|6666666.230098.peg.1656 CDS CYYO01000004.1 210978 213557 3 + 2580 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) Cellulosome
fig|6666666.230098.peg.1657 CDS CYYO01000004.1 214553 213570 -2 - 984 FIG00405090: hypothetical protein - none -
fig|6666666.230098.peg.1658 CDS CYYO01000004.1 214647 215183 3 + 537 Nitroreductase family protein - none -
fig|6666666.230098.peg.1659 CDS CYYO01000004.1 215186 215521 2 + 336 FIG00407938: hypothetical protein - none -
fig|6666666.230098.peg.1660 CDS CYYO01000004.1 215526 216323 3 + 798 FIG137884: hypothetical protein Coenzyme A Biosynthesis cluster
fig|6666666.230098.peg.1661 CDS CYYO01000004.1 216403 216933 1 + 531 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC 3.1.3.45) - none -
fig|6666666.230098.peg.1662 CDS CYYO01000004.1 216980 217561 2 + 582 Septum formation protein Maf Bacterial Cell Division;
Bacterial Cytoskeleton;
Bacterial cell division cluster;
CBSS-354.1.peg.2917
fig|6666666.230098.peg.1663 CDS CYYO01000004.1 219750 217558 -3 - 2193 TPR domain protein - none -
fig|6666666.230098.peg.1664 CDS CYYO01000004.1 220857 219832 -3 - 1026 FIG00405727: hypothetical protein - none -
fig|6666666.230098.peg.1665 CDS CYYO01000004.1 222188 220932 -2 - 1257 Phosphoglycerate kinase (EC 2.7.2.3) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis
fig|6666666.230098.peg.1666 CDS CYYO01000004.1 222954 222280 -3 - 675 Endonuclease III (EC 4.2.99.18) DNA Repair Base Excision
fig|6666666.230098.peg.1667 CDS CYYO01000004.1 224147 222951 -2 - 1197 Major facilitator family transporter - none -
fig|6666666.230098.peg.1668 CDS CYYO01000004.1 225288 224254 -3 - 1035 Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20) tRNA aminoacylation, Phe
fig|6666666.230098.peg.1669 CDS CYYO01000004.1 225645 228287 3 + 2643 FIG00938541: hypothetical protein - none -
fig|6666666.230098.peg.1670 CDS CYYO01000004.1 228331 231624 1 + 3294 TonB family protein / TonB-dependent receptor Ton and Tol transport systems
fig|6666666.230098.peg.1671 CDS CYYO01000004.1 231671 232981 2 + 1311 Putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.230098.peg.1672 CDS CYYO01000004.1 233099 234295 2 + 1197 Fosmidomycin resistance protein - none -
fig|6666666.230098.peg.1673 CDS CYYO01000004.1 235145 234366 -2 - 780 Eukaryotic-type low-affinity urea transporter - none -
fig|6666666.230098.peg.1674 CDS CYYO01000004.1 235417 235722 1 + 306 FIG00412493: hypothetical protein - none -
fig|6666666.230098.peg.1675 CDS CYYO01000004.1 235749 236288 3 + 540 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) RuvABC plus a hypothetical
fig|6666666.230098.peg.1676 CDS CYYO01000004.1 236323 238320 1 + 1998 Glycogen debranching enzyme (EC 3.2.1.-) / Pullulanase (EC 3.2.1.41) Glycogen metabolism;
Maltose and Maltodextrin Utilization;
Trehalose Biosynthesis
fig|6666666.230098.peg.1677 CDS CYYO01000004.1 238328 239803 2 + 1476 Putative molybdenum transport ATP-binding protein modF - none -
fig|6666666.230098.peg.1678 CDS CYYO01000004.1 239907 240563 3 + 657 Transaldolase (EC 2.2.1.2) Pentose phosphate pathway
fig|6666666.230098.peg.1679 CDS CYYO01000004.1 240757 242577 1 + 1821 putative sulfatase - none -
fig|6666666.230098.peg.1680 CDS CYYO01000004.1 242593 243258 1 + 666 putative membrane-associated phospholipid phosphatase - none -
fig|6666666.230098.peg.1681 CDS CYYO01000004.1 245866 243269 -1 - 2598 FIG00898317: hypothetical protein - none -
fig|6666666.230098.peg.1682 CDS CYYO01000004.1 246752 245886 -2 - 867 FIG00898464: hypothetical protein - none -
fig|6666666.230098.peg.1683 CDS CYYO01000004.1 246951 248405 3 + 1455 Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3) High affinity phosphate transporter and control of PHO regulon;
PhoR-PhoB two-component regulatory system;
Phosphate metabolism
fig|6666666.230098.peg.1684 CDS CYYO01000004.1 248444 249127 2 + 684 Transcriptional regulatory protein rprY - none -
fig|6666666.230098.peg.1685 CDS CYYO01000004.1 249186 250355 3 + 1170 Small-conductance mechanosensitive channel - none -
fig|6666666.230098.peg.1686 CDS CYYO01000004.1 251410 250352 -1 - 1059 FIG00897204: hypothetical protein - none -
fig|6666666.230098.peg.1687 CDS CYYO01000004.1 252907 251450 -1 - 1458 Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3) Dipeptidases (EC 3.4.13.-);
Recycling of Peptidoglycan Amino Acids
fig|6666666.230098.peg.1688 CDS CYYO01000004.1 253140 253379 3 + 240 FIG00415025: hypothetical protein - none -
fig|6666666.230098.peg.1689 CDS CYYO01000004.1 253426 254007 1 + 582 Outer membrane protein H precursor Llipid A biosynthesis cluster;
Periplasmic Stress Response
fig|6666666.230098.peg.1690 CDS CYYO01000004.1 254858 254085 -2 - 774 Cytoplasmic copper homeostasis protein cutC - none -
fig|6666666.230098.peg.1691 CDS CYYO01000004.1 256482 254944 -3 - 1539 2@1,3@1-cyclic-nucleotide 2@1-phosphodiesterase (EC 3.1.4.16) CBSS-226186.1.peg.4416;
Purine conversions
fig|6666666.230098.peg.1692 CDS CYYO01000004.1 256898 256608 -2 - 291 Cell division ZapA family protein CBSS-226186.1.peg.4416
fig|6666666.230098.peg.1693 CDS CYYO01000004.1 257227 256913 -1 - 315 FIG034863: hypothetical protein CBSS-226186.1.peg.4416
fig|6666666.230098.peg.1694 CDS CYYO01000004.1 257757 258131 3 + 375 hypothetical protein - none -
fig|6666666.230098.peg.1695 CDS CYYO01000004.1 258144 258728 3 + 585 membrane protein, putative - none -
fig|6666666.230098.peg.1696 CDS CYYO01000004.1 258745 259035 1 + 291 Transcriptional regulators, marR/emrR family - none -
fig|6666666.230098.peg.1697 CDS CYYO01000004.1 259194 259772 3 + 579 5@1-methylthioadenosine nucleosidase (EC 3.2.2.16) / S-adenosylhomocysteine nucleosidase (EC 3.2.2.9) Adenosyl nucleosidases;
Adenosyl nucleosidases;
Methionine Biosynthesis;
Methionine Degradation;
Polyamine Metabolism
fig|6666666.230098.peg.1698 CDS CYYO01000004.1 260241 259882 -3 - 360 Hypothetical protein DUF454 - none -
fig|6666666.230098.peg.1699 CDS CYYO01000004.1 260277 261149 3 + 873 Pyridoxal kinase (EC 2.7.1.35) Pyridoxin (Vitamin B6) Biosynthesis
fig|6666666.230098.peg.1700 CDS CYYO01000004.1 261165 261998 3 + 834 hypothetical protein - none -
fig|6666666.230098.peg.1701 CDS CYYO01000004.1 262104 262436 3 + 333 Queuosine biosynthesis QueD, PTPS-I Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.230098.peg.1702 CDS CYYO01000004.1 262423 262968 1 + 546 Queuosine Biosynthesis QueE Radical SAM Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.230098.peg.1703 CDS CYYO01000004.1 263749 263174 -1 - 576 G:T/U mismatch-specific uracil/thymine DNA-glycosylase DNA repair, bacterial;
Uracil-DNA glycosylase
fig|6666666.230098.peg.1704 CDS CYYO01000004.1 265900 263804 -1 - 2097 Lysine 2,3-aminomutase (EC 5.4.3.2) - none -
fig|6666666.230098.peg.1705 CDS CYYO01000004.1 266690 266064 -2 - 627 FIG00404554: hypothetical protein - none -
fig|6666666.230098.peg.1706 CDS CYYO01000004.1 268165 266777 -1 - 1389 Amino acid carrier protein - none -
fig|6666666.230098.peg.1707 CDS CYYO01000004.1 269029 268388 -1 - 642 putative ATP-dependent DNA helicase - none -
fig|6666666.230098.peg.1708 CDS CYYO01000004.1 269179 269355 1 + 177 FIG00404335: hypothetical protein - none -
fig|6666666.230098.peg.1709 CDS CYYO01000004.1 269408 270715 2 + 1308 Biotin synthase related domain containing protein - none -
fig|6666666.230098.peg.1710 CDS CYYO01000004.1 270712 271485 1 + 774 Domain often clustered or fused with uracil-DNA glycosylase Uracil-DNA glycosylase
fig|6666666.230098.peg.1711 CDS CYYO01000004.1 272163 271492 -3 - 672 Mg(2+) transport ATPase protein C Magnesium transport
fig|6666666.230098.peg.1712 CDS CYYO01000004.1 273166 272186 -1 - 981 Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-) Murein Hydrolases
fig|6666666.230098.peg.1713 CDS CYYO01000004.1 273934 273209 -1 - 726 3-oxoacyl-[acyl-carrier protein] reductase paralog (EC 1.1.1.100) - none -
fig|6666666.230098.peg.1714 CDS CYYO01000004.1 274357 273947 -1 - 411 FIG004064: hypothetical protein - none -
fig|6666666.230098.peg.1715 CDS CYYO01000004.1 276252 274381 -3 - 1872 Two-component system sensor histidine kinase - none -
fig|6666666.230098.peg.1716 CDS CYYO01000004.1 276465 277211 3 + 747 lipase/acylhydrolase family protein - none -
fig|6666666.230098.peg.1717 CDS CYYO01000004.1 277234 277698 1 + 465 MaoC family protein - none -
fig|6666666.230098.peg.1718 CDS CYYO01000004.1 278209 277853 -1 - 357 FIG00404860: hypothetical protein - none -
fig|6666666.230098.peg.1719 CDS CYYO01000004.1 278490 278212 -3 - 279 Zinc finger domain-containing protein - none -
fig|6666666.230098.peg.1720 CDS CYYO01000004.1 278985 278527 -3 - 459 IAA acetyltransferase (EC 2.3.1.-) - none -
fig|6666666.230098.peg.1721 CDS CYYO01000004.1 279131 279613 2 + 483 FIG00414117: hypothetical protein - none -
fig|6666666.230098.peg.1722 CDS CYYO01000004.1 279672 279989 3 + 318 putative methylated-DNA methyltransferase - none -
fig|6666666.230098.peg.1723 CDS CYYO01000004.1 279994 280836 1 + 843 Endonuclease IV (EC 3.1.21.2) DNA repair, bacterial
fig|6666666.230098.peg.1724 CDS CYYO01000004.1 281230 280841 -1 - 390 Ribosomal-protein-S5p-alanine acetyltransferase Ribosomal protein S5p acylation;
Ribosome biogenesis bacterial
fig|6666666.230098.peg.1725 CDS CYYO01000004.1 281713 281243 -1 - 471 Histone acetyltransferase HPA2 and related acetyltransferases - none -
fig|6666666.230098.peg.1726 CDS CYYO01000004.1 283380 281752 -3 - 1629 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) RNA pseudouridine syntheses;
Ribosome biogenesis bacterial;
tRNA modification Bacteria
fig|6666666.230098.peg.1727 CDS CYYO01000004.1 283832 285427 2 + 1596 Two-component system sensor histidine kinase - none -
fig|6666666.230098.peg.1728 CDS CYYO01000004.1 285464 285577 2 + 114 hypothetical protein - none -
fig|6666666.230098.peg.1729 CDS CYYO01000004.1 285486 286343 3 + 858 FIG00412737: hypothetical protein - none -
fig|6666666.230098.peg.1730 CDS CYYO01000004.1 287084 286434 -2 - 651 Leucyl/phenylalanyl-tRNA--protein transferase (EC 2.3.2.6) Protein degradation
fig|6666666.230098.peg.1731 CDS CYYO01000004.1 289329 287089 -3 - 2241 ATP-dependent Clp protease ATP-binding subunit ClpA ClpAS cluster;
Proteolysis in bacteria, ATP-dependent;
Ribosome recycling related cluster
fig|6666666.230098.peg.1732 CDS CYYO01000004.1 289656 289345 -3 - 312 ATP-dependent Clp protease adaptor protein ClpS ClpAS cluster;
Proteolysis in bacteria, ATP-dependent
fig|6666666.230098.peg.1733 CDS CYYO01000004.1 290377 289688 -1 - 690 FIG00405132: hypothetical protein - none -
fig|6666666.230098.peg.1734 CDS CYYO01000004.1 291277 290420 -1 - 858 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) D-Galacturonate and D-Glucuronate Utilization
fig|6666666.230098.peg.1735 CDS CYYO01000004.1 291716 291267 -2 - 450 FIG074102: hypothetical protein - none -
fig|6666666.230098.peg.1736 CDS CYYO01000004.1 292449 292243 -3 - 207 hypothetical protein - none -
fig|6666666.230098.peg.1737 CDS CYYO01000004.1 292471 292584 1 + 114 hypothetical protein - none -
fig|6666666.230098.peg.1738 CDS CYYO01000004.1 293305 292838 -1 - 468 FIG00405194: hypothetical protein - none -
fig|6666666.230098.peg.1739 CDS CYYO01000004.1 294654 293362 -3 - 1293 Magnesium and cobalt efflux protein CorC CBSS-56780.10.peg.1536;
Copper homeostasis: copper tolerance;
Glycyl-tRNA synthetase containing cluster;
Magnesium transport;
tRNA-methylthiotransferase containing cluster
fig|6666666.230098.peg.1740 CDS CYYO01000004.1 294749 295561 2 + 813 Acetyl esterase - none -
fig|6666666.230098.peg.1741 CDS CYYO01000004.1 296475 295570 -3 - 906 FIG00405844: hypothetical protein - none -
fig|6666666.230098.peg.1742 CDS CYYO01000004.1 297871 296489 -1 - 1383 Carboxyl-terminal protease - none -
fig|6666666.230098.peg.1743 CDS CYYO01000004.1 298095 299381 3 + 1287 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) Methionine Biosynthesis;
Methionine Biosynthesis
fig|6666666.230098.peg.1744 CDS CYYO01000004.1 299404 300468 1 + 1065 tRNA-specific 2-thiouridylase MnmA RNA methylation
fig|6666666.230098.peg.1745 CDS CYYO01000004.1 301121 300459 -2 - 663 DNA-binding response regulator, LuxR family - none -
fig|6666666.230098.peg.1746 CDS CYYO01000004.1 301745 301212 -2 - 534 FIG00403648: hypothetical protein - none -
fig|6666666.230098.peg.1747 CDS CYYO01000004.1 303305 301869 -2 - 1437 Na(+)/H(+) antiporter - none -
fig|6666666.230098.peg.1748 CDS CYYO01000004.1 304649 303474 -2 - 1176 Putative transport protein - none -
fig|6666666.230098.peg.1749 CDS CYYO01000004.1 305057 306757 2 + 1701 Two-component response regulator - none -
fig|6666666.230098.peg.1750 CDS CYYO01000004.1 308343 306922 -3 - 1422 GTPase and tRNA-U34 5-formylation enzyme TrmE Cell Division Subsystem including YidCD;
RNA modification and chromosome partitioning cluster;
RNA modification cluster;
Universal GTPases;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.230098.peg.1751 CDS CYYO01000004.1 309476 308598 -2 - 879 Purine nucleoside phosphorylase (EC 2.4.2.1) Adenosyl nucleosidases;
Deoxyribose and Deoxynucleoside Catabolism;
Purine conversions
fig|6666666.230098.peg.1752 CDS CYYO01000004.1 310556 309570 -2 - 987 DUF1432 domain-containing protein - none -
fig|6666666.230098.peg.1753 CDS CYYO01000004.1 311093 310623 -2 - 471 FIG00898184: hypothetical protein - none -
fig|6666666.230098.peg.1754 CDS CYYO01000004.1 312532 311102 -1 - 1431 FIG00898772: hypothetical protein - none -
fig|6666666.230098.peg.1755 CDS CYYO01000004.1 312699 313448 3 + 750 tRNA(Cytosine32)-2-thiocytidine synthetase tRNA modification Bacteria
fig|6666666.230098.peg.1756 CDS CYYO01000004.1 313470 313838 3 + 369 membrane protein, putative - none -
fig|6666666.230098.peg.1757 CDS CYYO01000004.1 314876 313860 -2 - 1017 Thiamin biosynthesis lipoprotein ApbE Iron-sulfur cluster assembly
fig|6666666.230098.peg.1758 CDS CYYO01000004.1 315376 314903 -1 - 474 Integral membrane protein - none -
fig|6666666.230098.peg.1759 CDS CYYO01000004.1 316256 315489 -2 - 768 FIG00937024: hypothetical protein - none -
fig|6666666.230098.peg.1760 CDS CYYO01000004.1 316617 316225 -3 - 393 FIG00404794: hypothetical protein - none -
fig|6666666.230098.peg.1761 CDS CYYO01000004.1 317666 316713 -2 - 954 Glycosyl transferase - none -
fig|6666666.230098.peg.1762 CDS CYYO01000004.1 318231 317722 -3 - 510 FIG00896350: hypothetical protein - none -
fig|6666666.230098.peg.1763 CDS CYYO01000004.1 319040 321916 2 + 2877 FIG00417103: hypothetical protein - none -
fig|6666666.230098.peg.1764 CDS CYYO01000004.1 322208 325411 2 + 3204 TonB family protein / TonB-dependent receptor Ton and Tol transport systems
fig|6666666.230098.peg.1765 CDS CYYO01000004.1 325430 327019 2 + 1590 RagB/SusD domain protein - none -
fig|6666666.230098.peg.1766 CDS CYYO01000004.1 327051 328427 3 + 1377 FIG00412289: hypothetical protein - none -
fig|6666666.230098.peg.1767 CDS CYYO01000004.1 328491 329927 3 + 1437 Beta-glucanase precursor (EC 3.2.1.73) - none -
fig|6666666.230098.peg.1768 CDS CYYO01000004.1 330016 331305 1 + 1290 FIG00409141: hypothetical protein - none -
fig|6666666.230098.peg.1769 CDS CYYO01000004.1 331317 333560 3 + 2244 Beta-glucosidase (EC 3.2.1.21) - none -
fig|6666666.230098.peg.1770 CDS CYYO01000004.1 334953 333664 -3 - 1290 Enolase (EC 4.2.1.11) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis;
Serine-glyoxylate cycle
fig|6666666.230098.peg.1771 CDS CYYO01000004.1 335687 335019 -2 - 669 Quinolone resistance protein - none -
fig|6666666.230098.peg.1772 CDS CYYO01000004.1 336078 335701 -3 - 378 Protein crcB homolog - none -
fig|6666666.230098.peg.1773 CDS CYYO01000004.1 336804 337148 3 + 345 FIG00416107: hypothetical protein - none -
fig|6666666.230098.peg.1774 CDS CYYO01000004.1 337165 337290 1 + 126 FIG00416107: hypothetical protein - none -
fig|6666666.230098.peg.1775 CDS CYYO01000004.1 337509 339671 3 + 2163 Alpha-glucosidase SusB (EC 3.2.1.20) Cellulosome
fig|6666666.230098.peg.1776 CDS CYYO01000004.1 339878 340819 2 + 942 Ferredoxin Soluble cytochromes and functionally related electron carriers
fig|6666666.230098.peg.1777 CDS CYYO01000004.1 341629 340823 -1 - 807 Transcriptional regulator, AraC family - none -
fig|6666666.230098.peg.1778 CDS CYYO01000004.1 341687 343213 2 + 1527 Amidophosphoribosyltransferase (EC 2.4.2.14) Colicin V and Bacteriocin Production Cluster;
De Novo Purine Biosynthesis
fig|6666666.230098.peg.1779 CDS CYYO01000004.1 343410 344633 3 + 1224 Tripeptide aminopeptidase (EC 3.4.11.4) - none -
fig|6666666.230098.peg.1780 CDS CYYO01000004.1 347409 345886 -3 - 1524 FIG00409921: hypothetical protein - none -
fig|6666666.230098.peg.1781 CDS CYYO01000004.1 347838 347587 -3 - 252 LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-independent - none -
fig|6666666.230098.peg.1782 CDS CYYO01000004.1 348027 349034 3 + 1008 FIG00405867: hypothetical protein - none -
fig|6666666.230098.peg.1783 CDS CYYO01000004.1 349317 350327 3 + 1011 Fructose-bisphosphate aldolase class II (EC 4.1.2.13) Glycolysis and Gluconeogenesis
fig|6666666.230098.peg.1784 CDS CYYO01000004.1 352588 350798 -1 - 1791 Alpha-amylase (Neopullulanase) SusA (EC 3.2.1.135) Cellulosome
fig|6666666.230098.peg.1785 CDS CYYO01000004.1 354111 352759 -3 - 1353 TPR-domain containing protein - none -
fig|6666666.230098.peg.1786 CDS CYYO01000004.1 355441 354281 -1 - 1161 Methylmalonyl-CoA decarboxylase, beta chain (EC 4.1.1.41) Na+ translocating decarboxylases and related biotin-dependent enzymes;
Propionyl-CoA to Succinyl-CoA Module
fig|6666666.230098.peg.1787 CDS CYYO01000004.1 355877 355443 -2 - 435 Biotin carboxyl carrier protein of methylmalonyl-CoA decarboxylase Na+ translocating decarboxylases and related biotin-dependent enzymes
fig|6666666.230098.peg.1788 CDS CYYO01000004.1 356833 355901 -1 - 933 Membrane protein associated with methylmalonyl-CoA decarboxylase Na+ translocating decarboxylases and related biotin-dependent enzymes
fig|6666666.230098.peg.1789 CDS CYYO01000004.1 358418 356865 -2 - 1554 Methylmalonyl-CoA decarboxylase, alpha chain (EC 4.1.1.41) Na+ translocating decarboxylases and related biotin-dependent enzymes;
Propionyl-CoA to Succinyl-CoA Module
fig|6666666.230098.peg.1790 CDS CYYO01000004.1 358992 358477 -3 - 516 Methylmalonyl-CoA epimerase (EC 5.1.99.1) Propionyl-CoA to Succinyl-CoA Module
fig|6666666.230098.peg.1791 CDS CYYO01000004.1 359183 360670 2 + 1488 Outer membrane protein assembly factor YaeT precursor Llipid A biosynthesis cluster
fig|6666666.230098.peg.1792 CDS CYYO01000004.1 360814 362175 1 + 1362 Two-component system response regulator - none -
fig|6666666.230098.peg.1793 CDS CYYO01000004.1 362166 363479 3 + 1314 Sensor histidine kinase - none -
fig|6666666.230098.peg.1794 CDS CYYO01000004.1 365147 363513 -2 - 1635 L-aspartate beta-decarboxylase (EC 4.1.1.12) - none -
fig|6666666.230098.peg.1795 CDS CYYO01000004.1 367124 365424 -2 - 1701 putative transport protein - none -
fig|6666666.230098.peg.1796 CDS CYYO01000004.1 367307 369844 2 + 2538 FIG00407069: hypothetical protein - none -
fig|6666666.230098.peg.1797 CDS CYYO01000004.1 369952 371241 1 + 1290 Inositol-1-phosphate synthase (EC 5.5.1.4) - none -
fig|6666666.230098.peg.1798 CDS CYYO01000004.1 371380 371853 1 + 474 Phosphatidylglycerophosphatase A (EC 3.1.3.27) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Riboflavin synthesis cluster
fig|6666666.230098.peg.1799 CDS CYYO01000004.1 371838 372365 3 + 528 FIG00403675: hypothetical protein - none -
fig|6666666.230098.peg.1800 CDS CYYO01000004.1 372355 373008 1 + 654 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.230098.peg.1801 CDS CYYO01000004.1 373005 373937 3 + 933 FIG00939867: hypothetical protein - none -
fig|6666666.230098.peg.1802 CDS CYYO01000004.1 373946 375118 2 + 1173 NADH-dependent butanol dehydrogenase A (EC 1.1.1.-) - none -
fig|6666666.230098.peg.1803 CDS CYYO01000004.1 376773 375199 -3 - 1575 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) Bacterial Cell Division;
CBSS-354.1.peg.2917;
RNA processing and degradation, bacterial
fig|6666666.230098.peg.1804 CDS CYYO01000004.1 377284 377009 -1 - 276 DNA-binding protein HU DNA structural proteins, bacterial
fig|6666666.230098.peg.1805 CDS CYYO01000004.1 377442 378482 3 + 1041 A/G-specific adenine glycosylase (EC 3.2.2.-) DNA repair, bacterial
fig|6666666.230098.peg.1806 CDS CYYO01000004.1 378555 379010 3 + 456 Single-stranded DNA-binding protein DNA repair, bacterial;
DNA repair, bacterial RecFOR pathway
fig|6666666.230098.peg.1807 CDS CYYO01000004.1 379034 380383 2 + 1350 Magnesium and cobalt efflux protein CorC CBSS-56780.10.peg.1536;
Copper homeostasis: copper tolerance;
Glycyl-tRNA synthetase containing cluster;
Magnesium transport;
tRNA-methylthiotransferase containing cluster
fig|6666666.230098.peg.1808 CDS CYYO01000004.1 380497 381042 1 + 546 Siderophore (Surfactin) biosynthesis regulatory protein - none -
fig|6666666.230098.peg.1809 CDS CYYO01000004.1 382421 381048 -2 - 1374 Tryptophanase (EC 4.1.99.1) - none -
fig|6666666.230098.peg.1810 CDS CYYO01000004.1 382991 382845 -2 - 147 hypothetical protein - none -
fig|6666666.230098.peg.1811 CDS CYYO01000004.1 384950 383157 -2 - 1794 Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3) High affinity phosphate transporter and control of PHO regulon;
PhoR-PhoB two-component regulatory system;
Phosphate metabolism
fig|6666666.230098.peg.1812 CDS CYYO01000004.1 385614 384925 -3 - 690 Phosphate regulon transcriptional regulatory protein PhoB (SphR) High affinity phosphate transporter and control of PHO regulon;
PhoR-PhoB two-component regulatory system;
Phosphate metabolism
fig|6666666.230098.peg.1813 CDS CYYO01000004.1 385915 387099 1 + 1185 FIG00406664: hypothetical protein - none -
fig|6666666.230098.peg.1814 CDS CYYO01000004.1 387274 387152 -1 - 123 hypothetical protein - none -
fig|6666666.230098.peg.1815 CDS CYYO01000004.1 387780 390989 3 + 3210 Putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.230098.peg.1816 CDS CYYO01000004.1 391029 392858 3 + 1830 FIG00409833: hypothetical protein - none -
fig|6666666.230098.peg.1817 CDS CYYO01000004.1 393154 393996 1 + 843 FIG00407332: hypothetical protein - none -
fig|6666666.230098.peg.1818 CDS CYYO01000004.1 394060 395949 1 + 1890 COG0488: ATPase components of ABC transporters with duplicated ATPase domains - none -
fig|6666666.230098.peg.1819 CDS CYYO01000004.1 395994 396836 3 + 843 Histidinol-phosphatase (EC 3.1.3.15) Histidine Biosynthesis
fig|6666666.230098.peg.1820 CDS CYYO01000004.1 397338 396910 -3 - 429 Thioredoxin - none -
fig|6666666.230098.peg.1821 CDS CYYO01000004.1 397644 397348 -3 - 297 TRX family - none -
fig|6666666.230098.peg.1822 CDS CYYO01000004.1 399875 397716 -2 - 2160 FIG00899111: hypothetical protein - none -
fig|6666666.230098.peg.1823 CDS CYYO01000004.1 402180 400015 -3 - 2166 FIG00403185: hypothetical protein - none -
fig|6666666.230098.peg.1824 CDS CYYO01000004.1 403468 402233 -1 - 1236 Putative arylsulfatase regulatory protein - none -
fig|6666666.230098.peg.1825 CDS CYYO01000004.1 403602 404351 3 + 750 FIG00937518: hypothetical protein - none -
fig|6666666.230098.peg.1826 CDS CYYO01000004.1 405193 404435 -1 - 759 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.230098.peg.1827 CDS CYYO01000004.1 406418 405243 -2 - 1176 putative phosphoesterase - none -
fig|6666666.230098.peg.1828 CDS CYYO01000004.1 407032 406406 -1 - 627 FIG00402738: hypothetical protein - none -
fig|6666666.230098.peg.1829 CDS CYYO01000004.1 407522 407037 -2 - 486 RNA polymerase ECF-type sigma factor - none -
fig|6666666.230098.peg.1830 CDS CYYO01000004.1 408646 407732 -1 - 915 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) Methionine Biosynthesis
fig|6666666.230098.peg.1831 CDS CYYO01000004.1 410026 408680 -1 - 1347 Dihydroorotase (EC 3.5.2.3) De Novo Pyrimidine Synthesis
fig|6666666.230098.peg.1832 CDS CYYO01000004.1 410826 410071 -3 - 756 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE Copper homeostasis: copper tolerance;
Lipoprotein Biosynthesis;
tRNA-methylthiotransferase containing cluster;
tRNA-methylthiotransferase containing cluster
fig|6666666.230098.peg.1833 CDS CYYO01000004.1 411327 414869 3 + 3543 Transcription-repair coupling factor Cell division-ribosomal stress proteins cluster;
Transcription factors bacterial
fig|6666666.230098.peg.1834 CDS CYYO01000004.1 415533 414889 -3 - 645 FIG00407628: hypothetical protein - none -
fig|6666666.230098.peg.1835 CDS CYYO01000004.1 417407 415569 -2 - 1839 putative Fe-S oxidoreductase - none -
fig|6666666.230098.peg.1836 CDS CYYO01000004.1 417622 417404 -1 - 219 FIG00404338: hypothetical protein - none -
fig|6666666.230098.peg.1837 CDS CYYO01000004.1 417937 417623 -1 - 315 FIG00937687: hypothetical protein - none -
fig|6666666.230098.peg.1838 CDS CYYO01000004.1 420984 418054 -3 - 2931 Xanthan lyase - none -
fig|6666666.230098.peg.1839 CDS CYYO01000004.1 422011 421133 -1 - 879 hypothetical protein-signal peptide and transmembrane prediction - none -
fig|6666666.230098.peg.1840 CDS CYYO01000004.1 424085 422181 -2 - 1905 Glucosamine-6-phosphate deaminase (EC 3.5.99.6) Sialic Acid Metabolism
fig|6666666.230098.peg.1841 CDS CYYO01000004.1 424670 425371 2 + 702 PUTATIVE PERIPLASMIC PROTEIN - none -
fig|6666666.230098.peg.1842 CDS CYYO01000004.1 426134 425343 -2 - 792 Possible hydrolase - none -
fig|6666666.230098.peg.1843 CDS CYYO01000004.1 426726 426172 -3 - 555 Acyltransferase family protein - none -
fig|6666666.230098.peg.1844 CDS CYYO01000004.1 426997 426728 -1 - 270 FIG00405699: hypothetical protein - none -
fig|6666666.230098.peg.1845 CDS CYYO01000004.1 427301 428575 2 + 1275 RND efflux system, membrane fusion protein CmeA Multidrug Resistance Efflux Pumps
fig|6666666.230098.peg.1846 CDS CYYO01000004.1 428583 431693 3 + 3111 RND efflux system, inner membrane transporter CmeB Multidrug Resistance Efflux Pumps
fig|6666666.230098.peg.1847 CDS CYYO01000004.1 431711 433087 2 + 1377 RND efflux system, outer membrane lipoprotein CmeC Multidrug Resistance Efflux Pumps
fig|6666666.230098.peg.1848 CDS CYYO01000004.1 433675 433178 -1 - 498 Cold shock protein CspA Cold shock, CspA family of proteins
fig|6666666.230098.peg.1849 CDS CYYO01000004.1 433916 433755 -2 - 162 putative RNA-binding protein rbpA - none -
fig|6666666.230098.peg.1850 CDS CYYO01000004.1 434368 436014 1 + 1647 Pyrophosphate-dependent fructose 6-phosphate-1-kinase (EC 2.7.1.90) Glycolysis and Gluconeogenesis
fig|6666666.230098.peg.1851 CDS CYYO01000004.1 436226 436074 -2 - 153 hypothetical protein - none -
fig|6666666.230098.peg.1852 CDS CYYO01000004.1 436321 436947 1 + 627 Lyzozyme M1 (1,4-beta-N-acetylmuramidase) (EC 3.2.1.17) - none -
fig|6666666.230098.peg.1853 CDS CYYO01000004.1 437092 438396 1 + 1305 Macrolide-specific ABC-type efflux carrier (TC 3.A.1.122.1) - none -
fig|6666666.230098.peg.1854 CDS CYYO01000004.1 438424 439674 1 + 1251 ABC transporter permease - none -
fig|6666666.230098.peg.1855 CDS CYYO01000004.1 440521 439679 -1 - 843 Ribosomal protein L11 methyltransferase (EC 2.1.1.-) Heat shock dnaK gene cluster extended;
Ribosome biogenesis bacterial
fig|6666666.230098.peg.1856 CDS CYYO01000004.1 440802 442184 3 + 1383 Vitellogenin II precursor - none -
fig|6666666.230098.peg.1857 CDS CYYO01000004.1 442221 443882 3 + 1662 FIG00937714: hypothetical protein - none -
fig|6666666.230098.peg.1858 CDS CYYO01000004.1 444884 443994 -2 - 891 FIG00896412: hypothetical protein - none -
fig|6666666.230098.peg.1859 CDS CYYO01000004.1 445390 444920 -1 - 471 hypothetical protein - none -
fig|6666666.230098.peg.1860 CDS CYYO01000004.1 445861 445403 -1 - 459 FIG00406179: hypothetical protein - none -
fig|6666666.230098.peg.1861 CDS CYYO01000004.1 446382 445858 -3 - 525 RNA polymerase ECF-type sigma factor - none -
fig|6666666.230098.peg.1862 CDS CYYO01000004.1 447064 446507 -1 - 558 Rubrerythrin Oxidative stress;
Rubrerythrin
fig|6666666.230098.peg.1863 CDS CYYO01000004.1 447525 447091 -3 - 435 Peroxide stress regulator; Ferric uptake regulation protein; Fe2+/Zn2+ uptake regulation proteins Oxidative stress;
Oxidative stress;
Oxidative stress
fig|6666666.230098.peg.1864 CDS CYYO01000004.1 447822 449747 3 + 1926 NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase NAD and NADP cofactor biosynthesis global;
NAD and NADP cofactor biosynthesis global
fig|6666666.230098.peg.1865 CDS CYYO01000004.1 449914 449744 -1 - 171 hypothetical protein - none -
fig|6666666.230098.peg.1866 CDS CYYO01000004.1 450851 450021 -2 - 831 Transglycosylase - none -
fig|6666666.230098.peg.1867 CDS CYYO01000004.1 452992 450863 -1 - 2130 FIG00936866: hypothetical protein - none -
fig|6666666.230098.peg.1868 CDS CYYO01000004.1 453873 453328 -3 - 546 2-oxoglutarate oxidoreductase, gamma subunit (EC 1.2.7.3) - none -
fig|6666666.230098.peg.1869 CDS CYYO01000004.1 454657 453896 -1 - 762 2-oxoglutarate oxidoreductase, beta subunit (EC 1.2.7.3) - none -
fig|6666666.230098.peg.1870 CDS CYYO01000004.1 454842 454669 -3 - 174 FIG00404525: hypothetical protein - none -
fig|6666666.230098.peg.1871 CDS CYYO01000004.1 455924 454839 -2 - 1086 2-oxoglutarate oxidoreductase, alpha subunit (EC 1.2.7.3) - none -
fig|6666666.230098.peg.1872 CDS CYYO01000004.1 456171 455944 -3 - 228 2-oxoglutarate oxidoreductase, delta subunit, putative (EC 1.2.7.3) - none -
fig|6666666.230098.peg.1873 CDS CYYO01000004.1 456463 456188 -1 - 276 FIG00403100: hypothetical protein - none -
fig|6666666.230098.peg.1874 CDS CYYO01000004.1 457076 456639 -2 - 438 Ribose 5-phosphate isomerase B (EC 5.3.1.6) D-ribose utilization;
Pentose phosphate pathway
fig|6666666.230098.peg.1875 CDS CYYO01000004.1 459159 457168 -3 - 1992 Transketolase (EC 2.2.1.1) Pentose phosphate pathway
fig|6666666.230098.peg.1876 CDS CYYO01000004.1 460912 459368 -1 - 1545 Alpha-N-arabinofuranosidase 2 (EC 3.2.1.55) L-Arabinose utilization
fig|6666666.230098.peg.1877 CDS CYYO01000004.1 462534 460936 -3 - 1599 Ribulokinase (EC 2.7.1.16) L-Arabinose utilization
fig|6666666.230098.peg.1878 CDS CYYO01000004.1 464167 462659 -1 - 1509 L-arabinose isomerase (EC 5.3.1.4) L-Arabinose utilization
fig|6666666.230098.peg.1879 CDS CYYO01000004.1 464892 464206 -3 - 687 L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) L-Arabinose utilization
fig|6666666.230098.peg.1880 CDS CYYO01000004.1 465612 464935 -3 - 678 Hypothetical Nudix-like regulator - none -
fig|6666666.230098.peg.1881 CDS CYYO01000004.1 467366 465672 -2 - 1695 Predicted sodium-dependent galactose transporter - none -
fig|6666666.230098.peg.1882 CDS CYYO01000004.1 468533 467394 -2 - 1140 Aldose 1-epimerase (EC 5.1.3.3) Lactose and Galactose Uptake and Utilization;
Maltose and Maltodextrin Utilization
fig|6666666.230098.peg.1883 CDS CYYO01000004.1 468680 468793 2 + 114 hypothetical protein - none -
fig|6666666.230098.peg.1884 CDS CYYO01000004.1 469954 468800 -1 - 1155 Galactokinase (EC 2.7.1.6) Lactose and Galactose Uptake and Utilization
fig|6666666.230098.peg.1885 CDS CYYO01000004.1 471269 470004 -2 - 1266 Predicted glucose transporter in maltodextrin utilization gene cluster Maltose and Maltodextrin Utilization
fig|6666666.230098.peg.1886 CDS CYYO01000004.1 472460 471357 -2 - 1104 Aldose 1-epimerase (EC 5.1.3.3) Lactose and Galactose Uptake and Utilization;
Maltose and Maltodextrin Utilization
fig|6666666.230098.peg.1887 CDS CYYO01000004.1 472653 473624 3 + 972 Mannose-6-phosphate isomerase (EC 5.3.1.8) Mannose Metabolism
fig|6666666.230098.peg.1888 CDS CYYO01000004.1 473959 473699 -1 - 261 FIG00402836: hypothetical protein - none -
fig|6666666.230098.peg.1889 CDS CYYO01000004.1 474325 473972 -1 - 354 FIG00405237: hypothetical protein - none -
fig|6666666.230098.peg.1890 CDS CYYO01000004.1 474554 474345 -2 - 210 FIG00403582: hypothetical protein - none -
fig|6666666.230098.peg.1891 CDS CYYO01000004.1 475925 474648 -2 - 1278 ATP-dependent RNA helicase RhlE ATP-dependent RNA helicases, bacterial
fig|6666666.230098.peg.1892 CDS CYYO01000004.1 476100 476504 3 + 405 FIG00407519: hypothetical protein - none -
fig|6666666.230098.peg.1893 CDS CYYO01000004.1 476553 477053 3 + 501 FIG00936940: hypothetical protein - none -
fig|6666666.230098.peg.1894 CDS CYYO01000004.1 477589 478413 1 + 825 3@1(2@1),5@1-bisphosphate nucleotidase (EC 3.1.3.7) - none -
fig|6666666.230098.peg.1895 CDS CYYO01000004.1 478421 479974 2 + 1554 Sulfate permease Cysteine Biosynthesis
fig|6666666.230098.peg.1896 CDS CYYO01000004.1 479996 480601 2 + 606 Adenylylsulfate kinase (EC 2.7.1.25) Cysteine Biosynthesis
fig|6666666.230098.peg.1897 CDS CYYO01000004.1 480608 481519 2 + 912 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) Cysteine Biosynthesis
fig|6666666.230098.peg.1898 CDS CYYO01000004.1 481560 483023 3 + 1464 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) Cysteine Biosynthesis
fig|6666666.230098.peg.1899 CDS CYYO01000004.1 483079 484185 1 + 1107 FIG00896523: hypothetical protein - none -
fig|6666666.230098.peg.1900 CDS CYYO01000004.1 484202 485176 2 + 975 FIG00897664: hypothetical protein - none -
fig|6666666.230098.peg.1901 CDS CYYO01000005.1 886 374 -1 - 513 FIG00417660: hypothetical protein - none -
fig|6666666.230098.peg.1902 CDS CYYO01000005.1 2515 1139 -1 - 1377 Replicative DNA helicase (EC 3.6.1.-) - none -
fig|6666666.230098.peg.1903 CDS CYYO01000005.1 3143 2508 -2 - 636 hypothetical protein - none -
fig|6666666.230098.peg.1904 CDS CYYO01000005.1 3654 3352 -3 - 303 hypothetical protein - none -
fig|6666666.230098.peg.1905 CDS CYYO01000005.1 4411 3974 -1 - 438 hypothetical protein - none -
fig|6666666.230098.peg.1906 CDS CYYO01000005.1 4565 4452 -2 - 114 hypothetical protein - none -
fig|6666666.230098.peg.1907 CDS CYYO01000005.1 4962 6962 3 + 2001 FIG00415354: hypothetical protein - none -
fig|6666666.230098.peg.1908 CDS CYYO01000005.1 7108 7587 1 + 480 hypothetical protein - none -
fig|6666666.230098.peg.1909 CDS CYYO01000005.1 7584 9815 3 + 2232 Biotin synthase (EC 2.8.1.6) / Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) Biotin biosynthesis;
Biotin biosynthesis;
Biotin biosynthesis Experimental;
Biotin biosynthesis Experimental
fig|6666666.230098.peg.1910 CDS CYYO01000005.1 9939 11090 3 + 1152 8-amino-7-oxononanoate synthase (EC 2.3.1.47) Biotin biosynthesis;
Biotin biosynthesis Experimental
fig|6666666.230098.peg.1911 CDS CYYO01000005.1 11119 11904 1 + 786 Biotin synthesis protein BioG Biotin biosynthesis;
Biotin biosynthesis Experimental
fig|6666666.230098.peg.1912 CDS CYYO01000005.1 11922 12740 3 + 819 Biotin synthesis protein BioC Biotin biosynthesis;
Biotin biosynthesis Experimental
fig|6666666.230098.peg.1913 CDS CYYO01000005.1 12740 13387 2 + 648 Dethiobiotin synthetase (EC 6.3.3.3) Biotin biosynthesis;
Biotin biosynthesis Experimental
fig|6666666.230098.peg.1914 CDS CYYO01000005.1 13417 14589 1 + 1173 Glycosyl transferase, family 2 - none -
fig|6666666.230098.peg.1915 CDS CYYO01000005.1 15839 14595 -2 - 1245 ABC transporter, permease protein - none -
fig|6666666.230098.peg.1916 CDS CYYO01000005.1 17147 15948 -2 - 1200 Aspartate aminotransferase (EC 2.6.1.1) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.230098.peg.1917 CDS CYYO01000005.1 17410 18645 1 + 1236 FIG00413399: hypothetical protein - none -
fig|6666666.230098.peg.1918 CDS CYYO01000005.1 21249 18646 -3 - 2604 Two-component system sensor histidine kinase - none -
fig|6666666.230098.peg.1919 CDS CYYO01000005.1 22590 21343 -3 - 1248 ABC transporter permease - none -
fig|6666666.230098.peg.1920 CDS CYYO01000005.1 23859 22627 -3 - 1233 Macrolide-specific ABC-type efflux carrier (TC 3.A.1.122.1) - none -
fig|6666666.230098.peg.1921 CDS CYYO01000005.1 25113 23866 -3 - 1248 ABC transporter permease - none -
fig|6666666.230098.peg.1922 CDS CYYO01000005.1 26434 25136 -1 - 1299 Macrolide-specific ABC-type efflux carrier (TC 3.A.1.122.1) - none -
fig|6666666.230098.peg.1923 CDS CYYO01000005.1 27110 26487 -2 - 624 FIG00402683: hypothetical protein - none -
fig|6666666.230098.peg.1924 CDS CYYO01000005.1 28384 27152 -1 - 1233 ABC transporter permease - none -
fig|6666666.230098.peg.1925 CDS CYYO01000005.1 29701 28427 -1 - 1275 Macrolide-specific ABC-type efflux carrier (TC 3.A.1.122.1) - none -
fig|6666666.230098.peg.1926 CDS CYYO01000005.1 30418 29753 -1 - 666 ABC transporter ATP-binding protein - none -
fig|6666666.230098.peg.1927 CDS CYYO01000005.1 31873 30578 -1 - 1296 ABC transporter permease - none -
fig|6666666.230098.peg.1928 CDS CYYO01000005.1 33209 31890 -2 - 1320 Macrolide-specific ABC-type efflux carrier (TC 3.A.1.122.1) - none -
fig|6666666.230098.peg.1929 CDS CYYO01000005.1 34453 33206 -1 - 1248 ABC transporter permease - none -
fig|6666666.230098.peg.1930 CDS CYYO01000005.1 34581 34465 -3 - 117 hypothetical protein - none -
fig|6666666.230098.peg.1931 CDS CYYO01000005.1 35520 34597 -3 - 924 Hemagglutinin - none -
fig|6666666.230098.peg.1932 CDS CYYO01000005.1 35622 36104 3 + 483 Cytidine deaminase (EC 3.5.4.5) Murein hydrolase regulation and cell death;
tRNA modification Bacteria
fig|6666666.230098.peg.1933 CDS CYYO01000005.1 36463 38100 1 + 1638 Methionine ABC transporter ATP-binding protein Methionine Biosynthesis;
Methionine Degradation
fig|6666666.230098.peg.1934 CDS CYYO01000005.1 38206 38745 1 + 540 iron-sulfur flavoprotein - none -
fig|6666666.230098.peg.1935 CDS CYYO01000005.1 38778 40274 3 + 1497 Ferredoxin-type protein NapG (periplasmic nitrate reductase) Nitrate and nitrite ammonification
fig|6666666.230098.peg.1936 CDS CYYO01000005.1 40323 41726 3 + 1404 Fe-S oxidoreductase - none -
fig|6666666.230098.peg.1937 CDS CYYO01000005.1 41826 43751 3 + 1926 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins Ton and Tol transport systems
fig|6666666.230098.peg.1938 CDS CYYO01000005.1 43766 44275 2 + 510 hypothetical protein - none -
fig|6666666.230098.peg.1939 CDS CYYO01000005.1 45752 44301 -2 - 1452 FIG00416115: hypothetical protein - none -
fig|6666666.230098.peg.1940 CDS CYYO01000005.1 47328 45775 -3 - 1554 MoxR-like ATPase - none -
fig|6666666.230098.peg.1941 CDS CYYO01000005.1 47859 48497 3 + 639 putative DNA-binding protein - none -
fig|6666666.230098.peg.1942 CDS CYYO01000005.1 48595 49401 1 + 807 NADH pyrophosphatase (EC 3.6.1.22) Nudix proteins (nucleoside triphosphate hydrolases)
fig|6666666.230098.peg.1943 CDS CYYO01000005.1 51434 49692 -2 - 1743 Phosphoglucomutase (EC 5.4.2.2) - none -
fig|6666666.230098.peg.1944 CDS CYYO01000005.1 53159 51516 -2 - 1644 Probable dipeptidase (EC 3.4.-.-) - none -
fig|6666666.230098.peg.1945 CDS CYYO01000005.1 54878 53196 -2 - 1683 FIG00407700: hypothetical protein - none -
fig|6666666.230098.peg.1946 CDS CYYO01000005.1 55062 56168 3 + 1107 Alanine dehydrogenase (EC 1.4.1.1) Pyruvate Alanine Serine Interconversions
fig|6666666.230098.peg.1947 CDS CYYO01000005.1 57468 56245 -3 - 1224 Permeases of the major facilitator superfamily - none -
fig|6666666.230098.peg.1948 CDS CYYO01000005.1 57671 59107 2 + 1437 Glutamate decarboxylase (EC 4.1.1.15) - none -
fig|6666666.230098.peg.1949 CDS CYYO01000005.1 59230 60195 1 + 966 Glutaminase (EC 3.5.1.2) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.230098.peg.1950 CDS CYYO01000005.1 60293 61048 2 + 756 Potassium voltage-gated channel subfamily KQT; possible potassium channel, VIC family Potassium homeostasis
fig|6666666.230098.peg.1951 CDS CYYO01000005.1 61152 62738 3 + 1587 Glutamate/gamma-aminobutyrate antiporter - none -
fig|6666666.230098.peg.1952 CDS CYYO01000005.1 63781 62831 -1 - 951 Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9) Fatty Acid Biosynthesis FASII
fig|6666666.230098.peg.1953 CDS CYYO01000005.1 64501 63860 -1 - 642 FIG00402915: hypothetical protein - none -
fig|6666666.230098.peg.1954 CDS CYYO01000005.1 65128 64571 -1 - 558 FIG00405189: hypothetical protein - none -
fig|6666666.230098.peg.1955 CDS CYYO01000005.1 66248 65148 -2 - 1101 RNA polymerase ECF-type sigma factor - none -
fig|6666666.230098.peg.1956 CDS CYYO01000005.1 66786 66235 -3 - 552 RNA polymerase ECF-type sigma factor - none -
fig|6666666.230098.peg.1957 CDS CYYO01000005.1 67598 66894 -2 - 705 FIG00414056: hypothetical protein - none -
fig|6666666.230098.peg.1958 CDS CYYO01000005.1 68315 67605 -2 - 711 FIG00405854: hypothetical protein - none -
fig|6666666.230098.peg.1959 CDS CYYO01000005.1 69390 68542 -3 - 849 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) Mycobacterium virulence operon possibly involved in quinolinate biosynthesis;
NAD and NADP cofactor biosynthesis global
fig|6666666.230098.peg.1960 CDS CYYO01000005.1 69781 69383 -1 - 399 FIG00404066: hypothetical protein - none -
fig|6666666.230098.peg.1961 CDS CYYO01000005.1 69870 70343 3 + 474 LSU m3Psi1915 methyltransferase RlmH RNA methylation;
Ribosome biogenesis bacterial;
tRNA modification Bacteria
fig|6666666.230098.peg.1962 CDS CYYO01000005.1 73259 70350 -2 - 2910 L-fucose kinase (EC 2.7.1.52) - none -
fig|6666666.230098.peg.1963 CDS CYYO01000005.1 74039 73683 -2 - 357 Transcriptional regulator, MarR family - none -
fig|6666666.230098.peg.1964 CDS CYYO01000005.1 76636 74051 -1 - 2586 NADH dehydrogenase (EC 1.6.99.3) Respiratory dehydrogenases 1;
Riboflavin synthesis cluster
fig|6666666.230098.peg.1965 CDS CYYO01000005.1 77918 76704 -2 - 1215 Clostripain-related protein - none -
fig|6666666.230098.peg.1966 CDS CYYO01000005.1 78327 77929 -3 - 399 FIG00405061: hypothetical protein - none -
fig|6666666.230098.peg.1967 CDS CYYO01000005.1 79308 78448 -3 - 861 RNA polymerase sigma factor RpoD CBSS-349161.4.peg.2417;
Macromolecular synthesis operon;
Transcription initiation, bacterial sigma factors
fig|6666666.230098.peg.1968 CDS CYYO01000005.1 81030 79501 -3 - 1530 Outer membrane stress sensor protease DegS Periplasmic Stress Response;
Proteolysis in bacteria, ATP-dependent
fig|6666666.230098.peg.1969 CDS CYYO01000005.1 82700 81378 -2 - 1323 Transglutaminase-like enzymes, putative cysteine proteases - none -
fig|6666666.230098.peg.1970 CDS CYYO01000005.1 83881 82709 -1 - 1173 L-alanine-DL-glutamate epimerase Muconate lactonizing enzyme family;
Recycling of Peptidoglycan Amino Acids
fig|6666666.230098.peg.1971 CDS CYYO01000005.1 85254 84013 -3 - 1242 L-alanyl-gamma-D-glutamyl-L-diamino acid endopeptidase Muconate lactonizing enzyme family
fig|6666666.230098.peg.1972 CDS CYYO01000005.1 85863 87182 3 + 1320 Ribonuclease BN (EC 3.1.-.-) - none -
fig|6666666.230098.peg.1973 CDS CYYO01000005.1 88014 87412 -3 - 603 Riboflavin synthase eubacterial/eukaryotic (EC 2.5.1.9) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster;
riboflavin to FAD
fig|6666666.230098.peg.1974 CDS CYYO01000005.1 89062 88367 -1 - 696 Phosphate transport system regulatory protein PhoU High affinity phosphate transporter and control of PHO regulon;
Phosphate metabolism
fig|6666666.230098.peg.1975 CDS CYYO01000005.1 89878 89123 -1 - 756 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) High affinity phosphate transporter and control of PHO regulon;
Phosphate metabolism
fig|6666666.230098.peg.1976 CDS CYYO01000005.1 90756 89896 -3 - 861 Phosphate transport system permease protein PstA (TC 3.A.1.7.1) High affinity phosphate transporter and control of PHO regulon;
Phosphate metabolism
fig|6666666.230098.peg.1977 CDS CYYO01000005.1 91953 90769 -3 - 1185 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) High affinity phosphate transporter and control of PHO regulon;
Phosphate metabolism
fig|6666666.230098.peg.1978 CDS CYYO01000005.1 92145 92963 3 + 819 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) High affinity phosphate transporter and control of PHO regulon;
PhoR-PhoB two-component regulatory system;
Phosphate metabolism
fig|6666666.230098.peg.1979 CDS CYYO01000005.1 93038 94777 2 + 1740 Glutaminyl-tRNA synthetase (EC 6.1.1.18) tRNA aminoacylation, Glu and Gln
fig|6666666.230098.peg.1980 CDS CYYO01000005.1 94782 96194 3 + 1413 TPR-domain containing protein - none -
fig|6666666.230098.peg.1981 CDS CYYO01000005.1 96289 96861 1 + 573 Alkaline phosphatase like protein Phosphate metabolism
fig|6666666.230098.peg.1982 CDS CYYO01000005.1 97452 96952 -3 - 501 Thiol peroxidase, Tpx-type (EC 1.11.1.15) CBSS-257314.1.peg.752;
Thioredoxin-disulfide reductase
fig|6666666.230098.peg.1983 CDS CYYO01000005.1 97579 98184 1 + 606 FIG00407667: hypothetical protein - none -
fig|6666666.230098.peg.1984 CDS CYYO01000005.1 98841 98248 -3 - 594 Site-specific recombinase Mpi - none -
fig|6666666.230098.peg.1985 CDS CYYO01000005.1 100039 99071 -1 - 969 Lipopolysaccharide biosynthesis protein RffA - none -
fig|6666666.230098.peg.1986 CDS CYYO01000005.1 102150 101161 -3 - 990 oxidoreductase of aldo/keto reductase family, subgroup 1 - none -
fig|6666666.230098.peg.1987 CDS CYYO01000005.1 103326 102163 -3 - 1164 Capsule biosynthesis protein capA - none -
fig|6666666.230098.peg.1988 CDS CYYO01000005.1 104432 103323 -2 - 1110 putative hexapeptide transferase family protein - none -
fig|6666666.230098.peg.1989 CDS CYYO01000005.1 104844 104437 -3 - 408 Lactoylglutathione lyase, YQJC B.subtilis ortholog - none -
fig|6666666.230098.peg.1990 CDS CYYO01000005.1 105914 104847 -2 - 1068 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) Fatty Acid Biosynthesis FASII
fig|6666666.230098.peg.1991 CDS CYYO01000005.1 107385 105919 -3 - 1467 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) Biotin biosynthesis
fig|6666666.230098.peg.1992 CDS CYYO01000005.1 107614 107378 -1 - 237 hypothetical protein - none -
fig|6666666.230098.peg.1993 CDS CYYO01000005.1 108376 107621 -1 - 756 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) Fatty Acid Biosynthesis FASII
fig|6666666.230098.peg.1994 CDS CYYO01000005.1 109410 108376 -3 - 1035 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) - none -
fig|6666666.230098.peg.1995 CDS CYYO01000005.1 109646 109416 -2 - 231 Acyl carrier protein Fatty Acid Biosynthesis FASII;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.230098.peg.1996 CDS CYYO01000005.1 110929 109682 -1 - 1248 hypothetical protein - none -
fig|6666666.230098.peg.1997 CDS CYYO01000005.1 111582 110944 -3 - 639 Acetyltransferase (isoleucine patch superfamily) - none -
fig|6666666.230098.peg.1998 CDS CYYO01000005.1 112228 111596 -1 - 633 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) CBSS-296591.1.peg.2330;
N-linked Glycosylation in Bacteria
fig|6666666.230098.peg.1999 CDS CYYO01000005.1 113309 112245 -2 - 1065 Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-) CBSS-296591.1.peg.2330;
N-linked Glycosylation in Bacteria
fig|6666666.230098.peg.2000 CDS CYYO01000005.1 114649 113384 -1 - 1266 UDP-glucose dehydrogenase (EC 1.1.1.22) - none -
fig|6666666.230098.peg.2001 CDS CYYO01000005.1 115694 114717 -2 - 978 UDP-glucose 4-epimerase (EC 5.1.3.2) CBSS-296591.1.peg.2330;
Lactose and Galactose Uptake and Utilization;
N-linked Glycosylation in Bacteria;
Rhamnose containing glycans
fig|6666666.230098.peg.2002 CDS CYYO01000005.1 116640 115822 -3 - 819 WbuO - none -
fig|6666666.230098.peg.2003 CDS CYYO01000005.1 117310 116633 -1 - 678 hypothetical protein - none -
fig|6666666.230098.peg.2004 CDS CYYO01000005.1 118494 117313 -3 - 1182 hypothetical protein - none -
fig|6666666.230098.peg.2005 CDS CYYO01000005.1 119662 118499 -1 - 1164 hypothetical protein - none -
fig|6666666.230098.peg.2006 CDS CYYO01000005.1 120445 120020 -1 - 426 UpdZ protein - none -
fig|6666666.230098.peg.2007 CDS CYYO01000005.1 121078 120545 -1 - 534 Transcription antitermination protein UpdY Transcription factors bacterial
fig|6666666.230098.peg.2008 CDS CYYO01000005.1 122426 122304 -2 - 123 hypothetical protein - none -
fig|6666666.230098.peg.2009 CDS CYYO01000005.1 122479 122937 1 + 459 FIG00896819: hypothetical protein - none -
fig|6666666.230098.peg.2010 CDS CYYO01000005.1 123017 123682 2 + 666 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC A Hypothetical Protein Related to Proline Metabolism
fig|6666666.230098.peg.2011 CDS CYYO01000005.1 123701 124678 2 + 978 putative dihydropyrimidine dehydrogenase [NADP+] precursor - none -
fig|6666666.230098.peg.2012 CDS CYYO01000005.1 126677 124773 -2 - 1905 UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-) CBSS-296591.1.peg.2330;
N-linked Glycosylation in Bacteria
fig|6666666.230098.peg.2013 CDS CYYO01000005.1 128187 126862 -3 - 1326 Predicted ATPase related to phosphate starvation-inducible protein PhoH Phosphate metabolism
fig|6666666.230098.peg.2014 CDS CYYO01000005.1 128401 129609 1 + 1209 Dihydrofolate synthase (EC 6.3.2.12) @ Folylpolyglutamate synthase (EC 6.3.2.17) Colicin V and Bacteriocin Production Cluster;
Colicin V and Bacteriocin Production Cluster;
Folate Biosynthesis;
Folate Biosynthesis
fig|6666666.230098.peg.2015 CDS CYYO01000005.1 129960 129577 -3 - 384 Bona fide RidA/YjgF/TdcF/RutC subgroup - none -
fig|6666666.230098.peg.2016 CDS CYYO01000005.1 131881 130178 -1 - 1704 Tetratricopeptide repeat family protein - none -
fig|6666666.230098.peg.2017 CDS CYYO01000005.1 132625 131885 -1 - 741 23S rRNA (guanosine-2@1-O-) -methyltransferase rlmB (EC 2.1.1.-) RNA methylation
fig|6666666.230098.peg.2018 CDS CYYO01000005.1 134324 132654 -2 - 1671 DNA repair protein RecN DNA repair, bacterial
fig|6666666.230098.peg.2019 CDS CYYO01000005.1 135573 134344 -3 - 1230 Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) / Phosphopantothenoylcysteine synthetase (EC 6.3.2.5) Coenzyme A Biosynthesis;
Coenzyme A Biosynthesis
fig|6666666.230098.peg.2020 CDS CYYO01000005.1 136344 135574 -3 - 771 DNA Pol III Epsilon Chain - none -
fig|6666666.230098.peg.2021 CDS CYYO01000005.1 137607 136483 -3 - 1125 DNA polymerase III beta subunit (EC 2.7.7.7) Cell Division Subsystem including YidCD;
DNA replication cluster 1
fig|6666666.230098.peg.2022 CDS CYYO01000005.1 137795 138163 2 + 369 FIG00937408: hypothetical protein - none -
fig|6666666.230098.peg.2023 CDS CYYO01000005.1 139965 138331 -3 - 1635 FIG00402966: hypothetical protein - none -
fig|6666666.230098.peg.2024 CDS CYYO01000005.1 140805 140038 -3 - 768 Metal-dependent hydrolases of the beta-lactamase superfamily I; PhnP protein Beta-lactamase
fig|6666666.230098.peg.2025 CDS CYYO01000005.1 141862 140876 -1 - 987 UDP-N-acetylenolpyruvoylglucosamine reductase (EC 1.1.1.158) Peptidoglycan Biosynthesis;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.230098.peg.2026 CDS CYYO01000005.1 142659 141880 -3 - 780 FIG00404031: hypothetical protein - none -
fig|6666666.230098.peg.2027 CDS CYYO01000005.1 142640 142765 2 + 126 hypothetical protein - none -
fig|6666666.230098.peg.2028 CDS CYYO01000005.1 143705 142749 -2 - 957 L-threonine 3-dehydrogenase (EC 1.1.1.103) Glycine Biosynthesis;
Threonine degradation
fig|6666666.230098.peg.2029 CDS CYYO01000005.1 143859 145046 3 + 1188 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29) Glycine Biosynthesis;
Glycine and Serine Utilization
fig|6666666.230098.peg.2030 CDS CYYO01000005.1 145670 145188 -2 - 483 Ferritin-like protein 2 Iron-sulfur cluster assembly
fig|6666666.230098.peg.2031 CDS CYYO01000005.1 146973 145813 -3 - 1161 Diaminopimelate decarboxylase (EC 4.1.1.20) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.230098.peg.2032 CDS CYYO01000005.1 148446 147127 -3 - 1320 Aspartokinase (EC 2.7.2.4) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch;
Threonine and Homoserine Biosynthesis
fig|6666666.230098.peg.2033 CDS CYYO01000005.1 149271 148570 -3 - 702 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) Bacterial Cell Division
fig|6666666.230098.peg.2034 CDS CYYO01000005.1 149906 149301 -2 - 606 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) / Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) Histidine Biosynthesis;
Histidine Biosynthesis;
Riboflavin synthesis cluster
fig|6666666.230098.peg.2035 CDS CYYO01000005.1 150783 150028 -3 - 756 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) Histidine Biosynthesis
fig|6666666.230098.peg.2036 CDS CYYO01000005.1 151555 150833 -1 - 723 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Histidine Biosynthesis
fig|6666666.230098.peg.2037 CDS CYYO01000005.1 152166 151576 -3 - 591 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) Histidine Biosynthesis
fig|6666666.230098.peg.2038 CDS CYYO01000005.1 153113 152256 -2 - 858 Formyltetrahydrofolate deformylase (EC 3.5.1.10) 5-FCL-like protein;
One-carbon metabolism by tetrahydropterines
fig|6666666.230098.peg.2039 CDS CYYO01000005.1 153951 154208 3 + 258 Mobile element protein - none -
fig|6666666.230098.peg.2040 CDS CYYO01000005.1 154221 154358 3 + 138 hypothetical protein - none -
fig|6666666.230098.peg.2041 CDS CYYO01000005.1 155540 155400 -2 - 141 Histone acetyltransferase HPA2 and related acetyltransferases - none -
fig|6666666.230098.peg.2042 CDS CYYO01000005.1 155750 155586 -2 - 165 Histone acetyltransferase HPA2 and related acetyltransferases - none -
fig|6666666.230098.peg.2043 CDS CYYO01000005.1 156462 156169 -3 - 294 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases CBSS-258594.1.peg.3339;
cAMP signaling in bacteria
fig|6666666.230098.peg.2044 CDS CYYO01000005.1 157289 156507 -2 - 783 HMP-PP hydrolase (pyridoxal phosphatase) Cof, detected in genetic screen for thiamin metabolic genes (PMID:15292217) - none -
fig|6666666.230098.peg.2045 CDS CYYO01000005.1 158125 157334 -1 - 792 Transcriptional regulator, AraC family - none -
fig|6666666.230098.peg.2046 CDS CYYO01000005.1 159700 158390 -1 - 1311 Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage Bacterial Cell Division;
Bacterial Cytoskeleton;
Cell division-ribosomal stress proteins cluster;
Stationary phase repair cluster
fig|6666666.230098.peg.2047 CDS CYYO01000005.1 160671 159697 -3 - 975 MoxR-like ATPases - none -
fig|6666666.230098.peg.2048 CDS CYYO01000005.1 161906 160683 -2 - 1224 FIG00652157: hypothetical protein - none -
fig|6666666.230098.peg.2049 CDS CYYO01000005.1 162517 161903 -1 - 615 FIG00404596: hypothetical protein - none -
fig|6666666.230098.peg.2050 CDS CYYO01000005.1 163348 162527 -1 - 822 FIG00403491: hypothetical protein - none -
fig|6666666.230098.peg.2051 CDS CYYO01000005.1 164415 163411 -3 - 1005 FIG00649403: hypothetical protein - none -
fig|6666666.230098.peg.2052 CDS CYYO01000005.1 165181 164942 -1 - 240 FIG00411354: hypothetical protein - none -
fig|6666666.230098.peg.2053 CDS CYYO01000005.1 165502 165717 1 + 216 FIG00408583: hypothetical protein - none -
fig|6666666.230098.peg.2054 CDS CYYO01000005.1 165729 165950 3 + 222 FIG00896355: hypothetical protein - none -
fig|6666666.230098.peg.2055 CDS CYYO01000005.1 165964 166380 1 + 417 FIG00899057: hypothetical protein - none -
fig|6666666.230098.peg.2056 CDS CYYO01000005.1 166377 167708 3 + 1332 FIG00897206: hypothetical protein - none -
fig|6666666.230098.peg.2057 CDS CYYO01000005.1 167787 167990 3 + 204 FIG00938992: hypothetical protein - none -
fig|6666666.230098.peg.2058 CDS CYYO01000005.1 168022 168243 1 + 222 FIG00937084: hypothetical protein - none -
fig|6666666.230098.peg.2059 CDS CYYO01000005.1 168240 168485 3 + 246 FIG00897394: hypothetical protein - none -
fig|6666666.230098.peg.2060 CDS CYYO01000005.1 168491 168847 2 + 357 FIG00403252: hypothetical protein - none -
fig|6666666.230098.peg.2061 CDS CYYO01000005.1 169126 168881 -1 - 246 FIG00407972: hypothetical protein - none -
fig|6666666.230098.peg.2062 CDS CYYO01000005.1 169628 169335 -2 - 294 Lysozyme-related protein - none -
fig|6666666.230098.peg.2063 CDS CYYO01000005.1 170362 169859 -1 - 504 Conjugative transposon protein TraQ Conjugative transposon, Bacteroidales
fig|6666666.230098.peg.2064 CDS CYYO01000005.1 171021 170359 -3 - 663 Conjugative transposon protein TraP @ DNA primase (EC 2.7.7.-) CBSS-349161.4.peg.2417;
Macromolecular synthesis operon
fig|6666666.230098.peg.2065 CDS CYYO01000005.1 171763 171269 -1 - 495 Conjugative transposon protein TraO Conjugative transposon, Bacteroidales
fig|6666666.230098.peg.2066 CDS CYYO01000005.1 172833 171847 -3 - 987 Conjugative transposon protein TraN Conjugative transposon, Bacteroidales
fig|6666666.230098.peg.2067 CDS CYYO01000005.1 174220 172868 -1 - 1353 Conjugative transposon protein TraM Conjugative transposon, Bacteroidales
fig|6666666.230098.peg.2068 CDS CYYO01000005.1 174488 174201 -2 - 288 Mobile element protein - none -
fig|6666666.230098.peg.2069 CDS CYYO01000005.1 175139 174516 -2 - 624 Conjugative transposon protein TraK Conjugative transposon, Bacteroidales
fig|6666666.230098.peg.2070 CDS CYYO01000005.1 176175 175171 -3 - 1005 Conjugative transposon protein TraJ Conjugative transposon, Bacteroidales
fig|6666666.230098.peg.2071 CDS CYYO01000005.1 176790 176179 -3 - 612 Conjugative transposon protein TraI Conjugative transposon, Bacteroidales
fig|6666666.230098.peg.2072 CDS CYYO01000005.1 177212 176832 -2 - 381 Conjugative transposon protein TraH Conjugative transposon, Bacteroidales
fig|6666666.230098.peg.2073 CDS CYYO01000005.1 179757 177253 -3 - 2505 Conjugative transposon protein TraG Conjugative transposon, Bacteroidales
fig|6666666.230098.peg.2074 CDS CYYO01000005.1 180086 179754 -2 - 333 Conjugative transposon protein TraF Conjugative transposon, Bacteroidales
fig|6666666.230098.peg.2075 CDS CYYO01000005.1 180414 180097 -3 - 318 Conjugative transposon protein TraE Conjugative transposon, Bacteroidales
fig|6666666.230098.peg.2076 CDS CYYO01000005.1 181389 180616 -3 - 774 Conjugative transposon protein TraD Conjugative transposon, Bacteroidales
fig|6666666.230098.peg.2077 CDS CYYO01000005.1 181714 181361 -1 - 354 Conjugative transposon protein TraC Conjugative transposon, Bacteroidales
fig|6666666.230098.peg.2078 CDS CYYO01000005.1 182157 181717 -3 - 441 Conjugative transposon protein TraB Conjugative transposon, Bacteroidales
fig|6666666.230098.peg.2079 CDS CYYO01000005.1 183209 182160 -2 - 1050 Conjugative transposon protein TraA Conjugative transposon, Bacteroidales
fig|6666666.230098.peg.2080 CDS CYYO01000005.1 183085 183249 1 + 165 hypothetical protein - none -
fig|6666666.230098.peg.2081 CDS CYYO01000005.1 183230 183361 2 + 132 FIG00896613: hypothetical protein - none -
fig|6666666.230098.peg.2082 CDS CYYO01000005.1 183631 184059 1 + 429 hypothetical protein clusted with conjugative transposons, BF0131 Conjugative transposon, Bacteroidales
fig|6666666.230098.peg.2083 CDS CYYO01000005.1 184038 185285 3 + 1248 Putative conjugative transposon mobilization protein BF0132 Conjugative transposon, Bacteroidales
fig|6666666.230098.peg.2084 CDS CYYO01000005.1 185316 187334 3 + 2019 Putative mobilization protein BF0133 Conjugative transposon, Bacteroidales
fig|6666666.230098.peg.2085 CDS CYYO01000005.1 190720 187466 -1 - 3255 FIG00404088: hypothetical protein - none -
fig|6666666.230098.peg.2086 CDS CYYO01000005.1 191867 190737 -2 - 1131 Prokaryotic ATPase - none -
fig|6666666.230098.peg.2087 CDS CYYO01000005.1 192774 192169 -3 - 606 tetracycline resistance element mobilization regulatory protein RteC - none -
fig|6666666.230098.peg.2088 CDS CYYO01000005.1 193435 193013 -1 - 423 FIG00937326: hypothetical protein - none -
fig|6666666.230098.peg.2089 CDS CYYO01000005.1 193866 194960 3 + 1095 tyrosine type site-specific recombinase - none -
fig|6666666.230098.peg.2090 CDS CYYO01000005.1 195160 195864 1 + 705 hypothetical protein - none -
fig|6666666.230098.peg.2091 CDS CYYO01000005.1 196065 196439 3 + 375 putative excisionase - none -
fig|6666666.230098.peg.2092 CDS CYYO01000005.1 196417 197517 1 + 1101 FIG00403804: hypothetical protein - none -
fig|6666666.230098.peg.2093 CDS CYYO01000005.1 197621 198508 2 + 888 DNA primase (EC 2.7.7.-) CBSS-349161.4.peg.2417;
Macromolecular synthesis operon
fig|6666666.230098.peg.2094 CDS CYYO01000005.1 198660 199199 3 + 540 FIG00896660: hypothetical protein - none -
fig|6666666.230098.peg.2095 CDS CYYO01000005.1 199201 199527 1 + 327 FIG00898505: hypothetical protein - none -
fig|6666666.230098.peg.2096 CDS CYYO01000005.1 199582 199959 1 + 378 Conjugative transposon protein TraE Conjugative transposon, Bacteroidales
fig|6666666.230098.peg.2097 CDS CYYO01000005.1 199975 200271 1 + 297 FIG00897980: hypothetical protein - none -
fig|6666666.230098.peg.2098 CDS CYYO01000005.1 200383 203091 1 + 2709 Conjugative transposon protein TraG Conjugative transposon, Bacteroidales
fig|6666666.230098.peg.2099 CDS CYYO01000005.1 203103 205649 3 + 2547 FIG00898215: hypothetical protein - none -
fig|6666666.230098.peg.2100 CDS CYYO01000005.1 205646 206371 2 + 726 FIG00897793: hypothetical protein - none -
fig|6666666.230098.peg.2101 CDS CYYO01000005.1 206411 207157 2 + 747 FIG00896865: hypothetical protein - none -
fig|6666666.230098.peg.2102 CDS CYYO01000005.1 207170 208303 2 + 1134 FIG01290742: hypothetical protein - none -
fig|6666666.230098.peg.2103 CDS CYYO01000005.1 208345 208740 1 + 396 hypothetical protein - none -
fig|6666666.230098.peg.2104 CDS CYYO01000005.1 208744 209358 1 + 615 Conjugative transposon protein TraK Conjugative transposon, Bacteroidales
fig|6666666.230098.peg.2105 CDS CYYO01000005.1 209395 209751 1 + 357 FIG00403140: hypothetical protein - none -
fig|6666666.230098.peg.2106 CDS CYYO01000005.1 209762 210244 2 + 483 DNA adenine methyltransferase, phage-associated Phage DNA synthesis
fig|6666666.230098.peg.2107 CDS CYYO01000005.1 210252 211403 3 + 1152 Conjugative transposon protein TraM Conjugative transposon, Bacteroidales
fig|6666666.230098.peg.2108 CDS CYYO01000005.1 211415 212218 2 + 804 Adenine-specific methyltransferase (EC 2.1.1.72) CBSS-257314.1.peg.752
fig|6666666.230098.peg.2109 CDS CYYO01000005.1 212247 213098 3 + 852 Conjugative transposon protein TraN Conjugative transposon, Bacteroidales
fig|6666666.230098.peg.2110 CDS CYYO01000005.1 213101 213619 2 + 519 FIG00407458: hypothetical protein - none -
fig|6666666.230098.peg.2111 CDS CYYO01000005.1 213646 214302 1 + 657 FIG00403811: hypothetical protein - none -
fig|6666666.230098.peg.2112 CDS CYYO01000005.1 214316 215050 2 + 735 hypothetical protein - none -
fig|6666666.230098.peg.2113 CDS CYYO01000005.1 215054 217240 2 + 2187 Putative mobilization protein BF0133 Conjugative transposon, Bacteroidales
fig|6666666.230098.peg.2114 CDS CYYO01000005.1 218568 217348 -3 - 1221 FIG00411741: hypothetical protein - none -
fig|6666666.230098.peg.2115 CDS CYYO01000005.1 218717 218905 2 + 189 hypothetical protein - none -
fig|6666666.230098.peg.2116 CDS CYYO01000005.1 218995 219114 1 + 120 hypothetical protein - none -
fig|6666666.230098.peg.2117 CDS CYYO01000005.1 219578 219204 -2 - 375 FIG00408093: hypothetical protein - none -
fig|6666666.230098.peg.2118 CDS CYYO01000005.1 219884 219612 -2 - 273 FIG00402868: hypothetical protein - none -
fig|6666666.230098.peg.2119 CDS CYYO01000005.1 220167 219892 -3 - 276 FIG00405292: hypothetical protein - none -
fig|6666666.230098.peg.2120 CDS CYYO01000005.1 222345 220612 -3 - 1734 Chromosome (plasmid) partitioning protein ParB Bacterial Cytoskeleton;
Cell Division Subsystem including YidCD;
RNA modification and chromosome partitioning cluster
fig|6666666.230098.peg.2121 CDS CYYO01000005.1 222355 222651 1 + 297 FIG00407633: hypothetical protein - none -
fig|6666666.230098.peg.2122 CDS CYYO01000005.1 222632 222748 2 + 117 hypothetical protein - none -
fig|6666666.230098.peg.2123 CDS CYYO01000005.1 223024 222770 -1 - 255 FIG00403362: hypothetical protein - none -
fig|6666666.230098.peg.2124 CDS CYYO01000005.1 223787 223032 -2 - 756 Chromosome (plasmid) partitioning protein ParA Bacterial Cell Division;
Bacterial Cytoskeleton;
Cell Division Subsystem including YidCD;
RNA modification and chromosome partitioning cluster
fig|6666666.230098.peg.2125 CDS CYYO01000005.1 229120 224147 -1 - 4974 putative DNA methylase - none -
fig|6666666.230098.peg.2126 CDS CYYO01000005.1 230341 229709 -1 - 633 FIG00413360: hypothetical protein - none -
fig|6666666.230098.peg.2127 CDS CYYO01000005.1 230623 230399 -1 - 225 FIG00416510: hypothetical protein - none -
fig|6666666.230098.peg.2128 CDS CYYO01000005.1 231129 231007 -3 - 123 hypothetical protein - none -
fig|6666666.230098.peg.2129 CDS CYYO01000005.1 231164 231826 2 + 663 FIG00406576: hypothetical protein - none -
fig|6666666.230098.peg.2130 CDS CYYO01000005.1 231823 232896 1 + 1074 FIG00409689: hypothetical protein - none -
fig|6666666.230098.peg.2131 CDS CYYO01000005.1 232914 233627 3 + 714 conserved hypothetical protein [Pyrococcus horikoshii] COG2102: Predicted ATPases of PP-loop superfamily IPR002761: Domain of unknown function DUF71: B12 cluster - none -
fig|6666666.230098.peg.2132 CDS CYYO01000005.1 233661 234179 3 + 519 Cob(I)alamin adenosyltransferase (EC 2.5.1.17) Cobalamin synthesis;
Coenzyme B12 biosynthesis
fig|6666666.230098.peg.2133 CDS CYYO01000005.1 234981 234328 -3 - 654 Membrane proteins related to metalloendopeptidases - none -
fig|6666666.230098.peg.2134 CDS CYYO01000005.1 235201 235959 1 + 759 FIG00899284: hypothetical protein - none -
fig|6666666.230098.peg.2135 CDS CYYO01000005.1 235980 236204 3 + 225 FIG00897411: hypothetical protein - none -
fig|6666666.230098.peg.2136 CDS CYYO01000005.1 236254 237798 1 + 1545 FIG00402755: hypothetical protein - none -
fig|6666666.230098.peg.2137 CDS CYYO01000005.1 237802 239190 1 + 1389 FIG00899363: hypothetical protein - none -
fig|6666666.230098.peg.2138 CDS CYYO01000005.1 239187 239684 3 + 498 FIG00408532: hypothetical protein - none -
fig|6666666.230098.peg.2139 CDS CYYO01000005.1 239707 240354 1 + 648 FIG00897775: hypothetical protein - none -
fig|6666666.230098.peg.2140 CDS CYYO01000005.1 240369 241052 3 + 684 FIG00899176: hypothetical protein - none -
fig|6666666.230098.peg.2141 CDS CYYO01000005.1 241067 241732 2 + 666 FIG00897171: hypothetical protein - none -
fig|6666666.230098.peg.2142 CDS CYYO01000005.1 241757 242587 2 + 831 putative cell wall endopeptidase family protein - none -
fig|6666666.230098.peg.2143 CDS CYYO01000005.1 242611 242892 1 + 282 hypothetical protein - none -
fig|6666666.230098.peg.2144 CDS CYYO01000005.1 242901 244700 3 + 1800 FIG00896847: hypothetical protein - none -
fig|6666666.230098.peg.2145 CDS CYYO01000005.1 244728 246989 3 + 2262 DNA mismatch repair protein MutS DNA repair, bacterial MutL-MutS system;
DNA repair system including RecA, MutS and a hypothetical protein
fig|6666666.230098.peg.2146 CDS CYYO01000005.1 246993 248558 3 + 1566 putative hemagglutinin - none -
fig|6666666.230098.peg.2147 CDS CYYO01000005.1 248571 248747 3 + 177 hypothetical protein - none -
fig|6666666.230098.peg.2148 CDS CYYO01000005.1 248782 249438 1 + 657 FIG00405424: hypothetical protein - none -
fig|6666666.230098.peg.2149 CDS CYYO01000005.1 249444 249947 3 + 504 DNA primase TraC - none -
fig|6666666.230098.peg.2150 CDS CYYO01000005.1 250511 252322 2 + 1812 Retron-type RNA-directed DNA polymerase (EC 2.7.7.49) Group II intron-associated genes
fig|6666666.230098.peg.2151 CDS CYYO01000005.1 252444 253643 3 + 1200 Antirestriction protein - none -
fig|6666666.230098.peg.2152 CDS CYYO01000005.1 254078 253704 -2 - 375 hypothetical protein - none -
fig|6666666.230098.peg.2153 CDS CYYO01000005.1 254347 254090 -1 - 258 hypothetical protein - none -
fig|6666666.230098.peg.2154 CDS CYYO01000005.1 254886 254344 -3 - 543 FIG00409343: hypothetical protein - none -
fig|6666666.230098.peg.2155 CDS CYYO01000005.1 255718 255236 -1 - 483 hypothetical protein - none -
fig|6666666.230098.peg.2156 CDS CYYO01000005.1 256510 257457 1 + 948 FIG00402688: hypothetical protein - none -
fig|6666666.230098.peg.2157 CDS CYYO01000005.1 257533 259278 1 + 1746 putative cell surface protein - none -
fig|6666666.230098.peg.2158 CDS CYYO01000005.1 259302 261401 3 + 2100 putative cell wall biogenesis protein - none -
fig|6666666.230098.peg.2159 CDS CYYO01000005.1 261487 262566 1 + 1080 putative surface layer protein - none -
fig|6666666.230098.peg.2160 CDS CYYO01000005.1 262529 264670 2 + 2142 TonB-dependent receptor Ton and Tol transport systems
fig|6666666.230098.peg.2161 CDS CYYO01000005.1 264675 265814 3 + 1140 Vitamin B12 ABC transporter, B12-binding component BtuF Coenzyme B12 biosynthesis
fig|6666666.230098.peg.2162 CDS CYYO01000005.1 265815 266795 3 + 981 Vitamin B12 ABC transporter, permease component BtuC Coenzyme B12 biosynthesis
fig|6666666.230098.peg.2163 CDS CYYO01000005.1 266792 267547 2 + 756 Fe3+ ABC transporter, ATP-binding protein - none -
fig|6666666.230098.peg.2164 CDS CYYO01000005.1 267502 268329 1 + 828 Probable integral membrane protein Cj1166c - none -
fig|6666666.230098.peg.2165 CDS CYYO01000005.1 268326 268826 3 + 501 Probable integral membrane protein Cj1165c - none -
fig|6666666.230098.peg.2166 CDS CYYO01000005.1 268830 269567 3 + 738 FIG00412566: hypothetical protein - none -
fig|6666666.230098.peg.2167 CDS CYYO01000005.1 269579 269782 2 + 204 hypothetical protein - none -
fig|6666666.230098.peg.2168 CDS CYYO01000005.1 269779 270375 1 + 597 FIG00410604: hypothetical protein - none -
fig|6666666.230098.peg.2169 CDS CYYO01000005.1 271033 270476 -1 - 558 Major outer membrane protein OmpA - none -
fig|6666666.230098.peg.2170 CDS CYYO01000005.1 271784 271915 2 + 132 hypothetical protein - none -
fig|6666666.230098.peg.2171 CDS CYYO01000005.1 273388 271931 -1 - 1458 FIG00898120: hypothetical protein - none -
fig|6666666.230098.peg.2172 CDS CYYO01000005.1 274452 273607 -3 - 846 hypothetical protein - none -
fig|6666666.230098.peg.2173 CDS CYYO01000005.1 275032 274442 -1 - 591 FIG00899205: hypothetical protein - none -
fig|6666666.230098.peg.2174 CDS CYYO01000005.1 275400 275023 -3 - 378 FIG00897673: hypothetical protein - none -
fig|6666666.230098.peg.2175 CDS CYYO01000005.1 275873 275421 -2 - 453 FIG00404129: hypothetical protein - none -
fig|6666666.230098.peg.2176 CDS CYYO01000005.1 276944 275895 -2 - 1050 FIG00896953: hypothetical protein - none -
fig|6666666.230098.peg.2177 CDS CYYO01000005.1 277183 277794 1 + 612 serine type site-specific recombinase - none -
fig|6666666.230098.peg.2178 CDS CYYO01000005.1 278070 278351 3 + 282 DNA-binding protein HU DNA structural proteins, bacterial
fig|6666666.230098.peg.2179 CDS CYYO01000005.1 278819 278439 -2 - 381 putative single strand binding protein - none -
fig|6666666.230098.peg.2180 CDS CYYO01000005.1 279039 279176 3 + 138 hypothetical protein - none -
fig|6666666.230098.peg.2181 CDS CYYO01000005.1 279262 279438 1 + 177 hypothetical protein - none -
fig|6666666.230098.peg.2182 CDS CYYO01000005.1 279757 279500 -1 - 258 FIG00404705: hypothetical protein - none -
fig|6666666.230098.peg.2183 CDS CYYO01000005.1 280100 279774 -2 - 327 hypothetical protein - none -
fig|6666666.230098.peg.2184 CDS CYYO01000005.1 280288 280112 -1 - 177 hypothetical protein - none -
fig|6666666.230098.peg.2185 CDS CYYO01000005.1 280600 280307 -1 - 294 hypothetical protein - none -
fig|6666666.230098.peg.2186 CDS CYYO01000005.1 280672 280800 1 + 129 hypothetical protein - none -
fig|6666666.230098.peg.2187 CDS CYYO01000005.1 281615 281478 -2 - 138 hypothetical protein - none -
fig|6666666.230098.peg.2188 CDS CYYO01000005.1 282817 281729 -1 - 1089 Integral membrane protein - none -
fig|6666666.230098.peg.2189 CDS CYYO01000005.1 284951 282894 -2 - 2058 Putative glycosyl hydrolase of unknown function (DUF1680) - none -
fig|6666666.230098.peg.2190 CDS CYYO01000005.1 286444 284960 -1 - 1485 FIG00937589: hypothetical protein - none -
fig|6666666.230098.peg.2191 CDS CYYO01000005.1 287484 286480 -3 - 1005 Alpha-1,2-mannosidase Mannose Metabolism
fig|6666666.230098.peg.2192 CDS CYYO01000005.1 289941 287614 -3 - 2328 Alpha-1,2-mannosidase Mannose Metabolism
fig|6666666.230098.peg.2193 CDS CYYO01000005.1 292433 289938 -2 - 2496 Glutaminase A - none -
fig|6666666.230098.peg.2194 CDS CYYO01000005.1 294673 292493 -1 - 2181 FIG00410540: hypothetical protein - none -
fig|6666666.230098.peg.2195 CDS CYYO01000005.1 295550 294795 -2 - 756 FIG00404357: hypothetical protein - none -
fig|6666666.230098.peg.2196 CDS CYYO01000005.1 297681 295639 -3 - 2043 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.230098.peg.2197 CDS CYYO01000005.1 300910 297740 -1 - 3171 TonB family protein / TonB-dependent receptor Ton and Tol transport systems
fig|6666666.230098.peg.2198 CDS CYYO01000005.1 302386 300929 -1 - 1458 putative alpha-1,6-mannanase - none -
fig|6666666.230098.peg.2199 CDS CYYO01000005.1 304330 302489 -1 - 1842 FIG00415043: hypothetical protein - none -
fig|6666666.230098.peg.2200 CDS CYYO01000005.1 307434 304897 -3 - 2538 FIG00414427: hypothetical protein - none -
fig|6666666.230098.peg.2201 CDS CYYO01000005.1 309974 307689 -2 - 2286 Cellulase - none -
fig|6666666.230098.peg.2202 CDS CYYO01000005.1 310256 311311 2 + 1056 FIG00411696: hypothetical protein - none -
fig|6666666.230098.peg.2203 CDS CYYO01000005.1 311379 312239 3 + 861 FIG00408272: hypothetical protein - none -
fig|6666666.230098.peg.2204 CDS CYYO01000005.1 313360 312251 -1 - 1110 Nucleoside-diphosphate-sugar epimerases CBSS-296591.1.peg.2330
fig|6666666.230098.peg.2205 CDS CYYO01000005.1 314542 313406 -1 - 1137 oxidoreductase, Gfo/Idh/MocA family protein - none -
fig|6666666.230098.peg.2206 CDS CYYO01000005.1 315557 314547 -2 - 1011 putative anti-sigma factor - none -
fig|6666666.230098.peg.2207 CDS CYYO01000005.1 316161 315565 -3 - 597 RNA polymerase ECF-type sigma factor - none -
fig|6666666.230098.peg.2208 CDS CYYO01000005.1 316464 319928 3 + 3465 SusC, outer membrane protein involved in starch binding Cellulosome
fig|6666666.230098.peg.2209 CDS CYYO01000005.1 319950 321497 3 + 1548 Putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.230098.peg.2210 CDS CYYO01000005.1 321557 322975 2 + 1419 Oxidoreductase, Gfo/Idh/MocA family - none -
fig|6666666.230098.peg.2211 CDS CYYO01000005.1 322991 325573 2 + 2583 Beta-glucosidase (EC 3.2.1.21) - none -
fig|6666666.230098.peg.2212 CDS CYYO01000005.1 326784 325768 -3 - 1017 Putative phosphohydrolase, Icc family - none -
fig|6666666.230098.peg.2213 CDS CYYO01000005.1 327295 326816 -1 - 480 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis;
Stationary phase repair cluster
fig|6666666.230098.peg.2214 CDS CYYO01000005.1 328612 327479 -1 - 1134 Aldose 1-epimerase (EC 5.1.3.3) Lactose and Galactose Uptake and Utilization;
Maltose and Maltodextrin Utilization
fig|6666666.230098.peg.2215 CDS CYYO01000005.1 329878 328655 -1 - 1224 Putative arylsulfatase regulatory protein - none -
fig|6666666.230098.peg.2216 CDS CYYO01000005.1 331490 329925 -2 - 1566 Choline-sulfatase (EC 3.1.6.6) - none -
fig|6666666.230098.peg.2217 CDS CYYO01000005.1 333203 331539 -2 - 1665 Choline-sulfatase (EC 3.1.6.6) - none -
fig|6666666.230098.peg.2218 CDS CYYO01000005.1 335150 333216 -2 - 1935 Alpha-1,2-mannosidase Mannose Metabolism
fig|6666666.230098.peg.2219 CDS CYYO01000005.1 336770 335394 -2 - 1377 Choline-sulfatase (EC 3.1.6.6) - none -
fig|6666666.230098.peg.2220 CDS CYYO01000005.1 338618 336804 -2 - 1815 Beta-galactosidase (EC 3.2.1.23) Galactosylceramide and Sulfatide metabolism;
Lactose and Galactose Uptake and Utilization;
Lactose utilization
fig|6666666.230098.peg.2221 CDS CYYO01000005.1 340157 338688 -2 - 1470 FIG00937589: hypothetical protein - none -
fig|6666666.230098.peg.2222 CDS CYYO01000005.1 341401 340172 -1 - 1230 putative alpha-1,6-mannanase - none -
fig|6666666.230098.peg.2223 CDS CYYO01000005.1 341872 341405 -1 - 468 hypothetical protein - none -
fig|6666666.230098.peg.2224 CDS CYYO01000005.1 343456 341897 -1 - 1560 Putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.230098.peg.2225 CDS CYYO01000005.1 346666 343541 -1 - 3126 TonB family protein / TonB-dependent receptor Ton and Tol transport systems
fig|6666666.230098.peg.2226 CDS CYYO01000005.1 348499 346967 -1 - 1533 Putative sulfatase (EC 3.1.6.-) - none -
fig|6666666.230098.peg.2227 CDS CYYO01000005.1 350579 348954 -2 - 1626 Choline-sulfatase (EC 3.1.6.6) - none -
fig|6666666.230098.peg.2228 CDS CYYO01000005.1 351999 350620 -3 - 1380 Choline-sulfatase (EC 3.1.6.6) - none -
fig|6666666.230098.peg.2229 CDS CYYO01000005.1 353357 351996 -2 - 1362 Choline-sulfatase (EC 3.1.6.6) - none -
fig|6666666.230098.peg.2230 CDS CYYO01000005.1 357570 353479 -3 - 4092 DNA-binding response regulator, AraC family - none -
fig|6666666.230098.peg.2231 CDS CYYO01000005.1 358376 357903 -2 - 474 Mobile element protein - none -
fig|6666666.230098.peg.2232 CDS CYYO01000005.1 358723 358427 -1 - 297 Mobile element protein - none -
fig|6666666.230098.peg.2233 CDS CYYO01000006.1 250 116 -1 - 135 hypothetical protein - none -
fig|6666666.230098.peg.2234 CDS CYYO01000006.1 345 935 3 + 591 V-type ATP synthase subunit E (EC 3.6.3.14) V-Type ATP synthase
fig|6666666.230098.peg.2235 CDS CYYO01000006.1 970 1791 1 + 822 V-type ATP synthase subunit C (EC 3.6.3.14) V-Type ATP synthase
fig|6666666.230098.peg.2236 CDS CYYO01000006.1 1811 3565 2 + 1755 V-type ATP synthase subunit A (EC 3.6.3.14) V-Type ATP synthase
fig|6666666.230098.peg.2237 CDS CYYO01000006.1 3706 5031 1 + 1326 V-type ATP synthase subunit B (EC 3.6.3.14) V-Type ATP synthase
fig|6666666.230098.peg.2238 CDS CYYO01000006.1 5152 5757 1 + 606 V-type ATP synthase subunit D (EC 3.6.3.14) V-Type ATP synthase
fig|6666666.230098.peg.2239 CDS CYYO01000006.1 5754 7580 3 + 1827 V-type ATP synthase subunit I (EC 3.6.3.14) V-Type ATP synthase
fig|6666666.230098.peg.2240 CDS CYYO01000006.1 7614 8033 3 + 420 V-type ATP synthase subunit K (EC 3.6.3.14) V-Type ATP synthase
fig|6666666.230098.peg.2241 CDS CYYO01000006.1 8329 9990 1 + 1662 Glycogen - none -
fig|6666666.230098.peg.2242 CDS CYYO01000006.1 10021 12585 1 + 2565 Glycogen phosphorylase (EC 2.4.1.1) Glycogen metabolism;
Maltose and Maltodextrin Utilization
fig|6666666.230098.peg.2243 CDS CYYO01000006.1 13216 12710 -1 - 507 Flavodoxin 1 Flavodoxin
fig|6666666.230098.peg.2244 CDS CYYO01000006.1 13460 13756 2 + 297 hypothetical protein - none -
fig|6666666.230098.peg.2245 CDS CYYO01000006.1 13793 14539 2 + 747 Phosphoglycerate mutase (EC 5.4.2.1) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis;
Phosphoglycerate mutase protein family
fig|6666666.230098.peg.2246 CDS CYYO01000006.1 15290 14568 -2 - 723 FIG00408327: hypothetical protein - none -
fig|6666666.230098.peg.2247 CDS CYYO01000006.1 15403 16749 1 + 1347 FIG00899271: hypothetical protein - none -
fig|6666666.230098.peg.2248 CDS CYYO01000006.1 17420 16914 -2 - 507 Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) Ribonucleotide reduction
fig|6666666.230098.peg.2249 CDS CYYO01000006.1 19765 17558 -1 - 2208 Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) Inteins;
Ribonucleotide reduction
fig|6666666.230098.peg.2250 CDS CYYO01000006.1 20192 20073 -2 - 120 hypothetical protein - none -
fig|6666666.230098.peg.2251 CDS CYYO01000006.1 20191 21156 1 + 966 Methionine synthase II (cobalamin-independent) - none -
fig|6666666.230098.peg.2252 CDS CYYO01000006.1 22413 21313 -3 - 1101 Thiol:disulfide interchange protein - none -
fig|6666666.230098.peg.2253 CDS CYYO01000006.1 22845 22537 -3 - 309 SSU ribosomal protein S16p Ribosome SSU bacterial
fig|6666666.230098.peg.2254 CDS CYYO01000006.1 22834 23136 1 + 303 hypothetical protein - none -
fig|6666666.230098.peg.2255 CDS CYYO01000006.1 24573 23263 -3 - 1311 Methionine transporter MetT Methionine Biosynthesis;
Methionine Degradation
fig|6666666.230098.peg.2256 CDS CYYO01000006.1 26261 24750 -2 - 1512 Altronate dehydratase (EC 4.2.1.7) - none -
fig|6666666.230098.peg.2257 CDS CYYO01000006.1 27431 26376 -2 - 1056 Transcriptional regulator - none -
fig|6666666.230098.peg.2258 CDS CYYO01000006.1 27773 28798 2 + 1026 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) D-Galacturonate and D-Glucuronate Utilization;
Entner-Doudoroff Pathway
fig|6666666.230098.peg.2259 CDS CYYO01000006.1 28859 29209 2 + 351 FIG00416149: hypothetical protein - none -
fig|6666666.230098.peg.2260 CDS CYYO01000006.1 29316 29984 3 + 669 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) D-Galacturonate and D-Glucuronate Utilization;
Entner-Doudoroff Pathway
fig|6666666.230098.peg.2261 CDS CYYO01000006.1 30625 31797 1 + 1173 FIG00418002: hypothetical protein - none -
fig|6666666.230098.peg.2262 CDS CYYO01000006.1 31835 33736 2 + 1902 Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.230098.peg.2263 CDS CYYO01000006.1 33741 34787 3 + 1047 Beta-1,3-glucosyltransferase LOS core oligosaccharide biosynthesis
fig|6666666.230098.peg.2264 CDS CYYO01000006.1 34794 35834 3 + 1041 glycosyltransferase family 2 protein - none -
fig|6666666.230098.peg.2265 CDS CYYO01000006.1 35987 37030 2 + 1044 Glycosyltransferase (EC 2.4.1.-) - none -
fig|6666666.230098.peg.2266 CDS CYYO01000006.1 38559 37024 -3 - 1536 O-antigen flippase Wzx - none -
fig|6666666.230098.peg.2267 CDS CYYO01000006.1 38654 39640 2 + 987 FIG00410152: hypothetical protein - none -
fig|6666666.230098.peg.2268 CDS CYYO01000006.1 39775 40692 1 + 918 Glycosyl transferase, family 2 - none -
fig|6666666.230098.peg.2269 CDS CYYO01000006.1 41981 40716 -2 - 1266 Conserved protein, with a weak D-galactarate dehydratase/altronate hydrolase domain - none -
fig|6666666.230098.peg.2270 CDS CYYO01000006.1 42418 41975 -1 - 444 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) Murein Hydrolases;
Recycling of Peptidoglycan Amino Acids
fig|6666666.230098.peg.2271 CDS CYYO01000006.1 42565 42452 -1 - 114 hypothetical protein - none -
fig|6666666.230098.peg.2272 CDS CYYO01000006.1 43169 42654 -2 - 516 FIG00416394: hypothetical protein - none -
fig|6666666.230098.peg.2273 CDS CYYO01000006.1 43476 43601 3 + 126 hypothetical protein - none -
fig|6666666.230098.peg.2274 CDS CYYO01000006.1 43824 43576 -3 - 249 FIG00417360: hypothetical protein - none -
fig|6666666.230098.peg.2275 CDS CYYO01000006.1 45770 43956 -2 - 1815 DNA primase/helicase (EC 2.7.7.-) - none -
fig|6666666.230098.peg.2276 CDS CYYO01000006.1 45988 45782 -1 - 207 hypothetical protein - none -
fig|6666666.230098.peg.2277 CDS CYYO01000006.1 46992 46012 -3 - 981 FIG00418196: hypothetical protein - none -
fig|6666666.230098.peg.2278 CDS CYYO01000006.1 47490 47353 -3 - 138 hypothetical protein - none -
fig|6666666.230098.peg.2279 CDS CYYO01000006.1 49731 48730 -3 - 1002 Biotin carboxylase (EC 6.3.4.14) - none -
fig|6666666.230098.peg.2280 CDS CYYO01000006.1 50930 49728 -2 - 1203 Glycosyl transferase, group 1 CBSS-258594.1.peg.3339
fig|6666666.230098.peg.2281 CDS CYYO01000006.1 52064 50943 -2 - 1122 Glycosyltransferase CBSS-258594.1.peg.3339
fig|6666666.230098.peg.2282 CDS CYYO01000006.1 53266 52061 -1 - 1206 FIG00897759: hypothetical protein - none -
fig|6666666.230098.peg.2283 CDS CYYO01000006.1 54747 53290 -3 - 1458 Teichuronic acid biosynthesis protein TuaE, putative secreted polysaccharide polymerase Teichuronic acid biosynthesis
fig|6666666.230098.peg.2284 CDS CYYO01000006.1 56907 54748 -3 - 2160 Tyrosine-protein kinase Wzc (EC 2.7.10.2) CBSS-258594.1.peg.3339
fig|6666666.230098.peg.2285 CDS CYYO01000006.1 57794 56916 -2 - 879 FIG00898846: hypothetical protein - none -
fig|6666666.230098.peg.2286 CDS CYYO01000006.1 58953 57787 -3 - 1167 Undecaprenyl-phosphate galactosephosphotransferase (EC 2.7.8.6) CBSS-258594.1.peg.3339
fig|6666666.230098.peg.2287 CDS CYYO01000006.1 59331 58972 -3 - 360 putative two-component system response regulator - none -
fig|6666666.230098.peg.2288 CDS CYYO01000006.1 61639 59357 -1 - 2283 FIG00403729: hypothetical protein - none -
fig|6666666.230098.peg.2289 CDS CYYO01000006.1 62806 61820 -1 - 987 L-asparaginase I, cytoplasmic (EC 3.5.1.1) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.230098.peg.2290 CDS CYYO01000006.1 63781 63002 -1 - 780 Tryptophan synthase alpha chain (EC 4.2.1.20) Auxin biosynthesis;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.230098.peg.2291 CDS CYYO01000006.1 63761 64012 2 + 252 hypothetical protein - none -
fig|6666666.230098.peg.2292 CDS CYYO01000006.1 64570 63974 -1 - 597 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) Auxin biosynthesis;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.230098.peg.2293 CDS CYYO01000006.1 65535 64708 -3 - 828 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.230098.peg.2294 CDS CYYO01000006.1 66535 65540 -1 - 996 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) Auxin biosynthesis;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.230098.peg.2295 CDS CYYO01000006.1 67247 66600 -2 - 648 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Folate Biosynthesis;
Tryptophan synthesis;
Tryptophan synthesis
fig|6666666.230098.peg.2296 CDS CYYO01000006.1 68794 67394 -1 - 1401 Anthranilate synthase, aminase component (EC 4.1.3.27) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.230098.peg.2297 CDS CYYO01000006.1 70028 68847 -2 - 1182 Tryptophan synthase beta chain (EC 4.2.1.20) Auxin biosynthesis;
Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Tryptophan synthesis
fig|6666666.230098.peg.2298 CDS CYYO01000006.1 70415 70588 2 + 174 hypothetical protein - none -
fig|6666666.230098.peg.2299 CDS CYYO01000006.1 70654 71229 1 + 576 FIG00412396: hypothetical protein - none -
fig|6666666.230098.peg.2300 CDS CYYO01000006.1 72613 71315 -1 - 1299 putative secreted tripeptidyl aminopeptidase - none -
fig|6666666.230098.peg.2301 CDS CYYO01000006.1 74927 72795 -2 - 2133 Glutamine synthetase type III, GlnN (EC 6.3.1.2) Ammonia assimilation;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Glutamine synthetases;
Peptidoglycan Biosynthesis
fig|6666666.230098.peg.2302 CDS CYYO01000006.1 76298 75030 -2 - 1269 Ammonium transporter family Ammonia assimilation
fig|6666666.230098.peg.2303 CDS CYYO01000006.1 76713 76357 -3 - 357 Nitrogen regulatory protein P-II Ammonia assimilation
fig|6666666.230098.peg.2304 CDS CYYO01000006.1 77517 76792 -3 - 726 FrrB - none -
fig|6666666.230098.peg.2305 CDS CYYO01000006.1 78835 77603 -1 - 1233 L,L-diaminopimelate aminotransferase (EC 2.6.1.83) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.230098.peg.2306 CDS CYYO01000006.1 79684 78863 -1 - 822 Diaminopimelate epimerase (EC 5.1.1.7) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.230098.peg.2307 CDS CYYO01000006.1 80816 80052 -2 - 765 Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) Glycerol and Glycerol-3-phosphate Uptake and Utilization
fig|6666666.230098.peg.2308 CDS CYYO01000006.1 81577 80876 -1 - 702 DnaD domain protein - none -
fig|6666666.230098.peg.2309 CDS CYYO01000006.1 81968 81603 -2 - 366 hypothetical protein - none -
fig|6666666.230098.peg.2310 CDS CYYO01000006.1 82508 82149 -2 - 360 hypothetical protein - none -
fig|6666666.230098.peg.2311 CDS CYYO01000006.1 83130 83660 3 + 531 Transcription antitermination protein UpdY Transcription factors bacterial
fig|6666666.230098.peg.2312 CDS CYYO01000006.1 83746 84180 1 + 435 UpdZ protein - none -
fig|6666666.230098.peg.2313 CDS CYYO01000006.1 84254 85810 2 + 1557 hypothetical protein - none -
fig|6666666.230098.peg.2314 CDS CYYO01000006.1 86021 87514 2 + 1494 putative flippase - none -
fig|6666666.230098.peg.2315 CDS CYYO01000006.1 87529 88761 1 + 1233 Related to F420H2-dehydrogenase, beta subunit - none -
fig|6666666.230098.peg.2316 CDS CYYO01000006.1 88743 89909 3 + 1167 hypothetical protein - none -
fig|6666666.230098.peg.2317 CDS CYYO01000006.1 89918 91069 2 + 1152 UDP-N-acetylglucosamine 2-epimerase (EC 5.1.3.14) CMP-N-acetylneuraminate Biosynthesis;
Sialic Acid Metabolism
fig|6666666.230098.peg.2318 CDS CYYO01000006.1 91084 92262 1 + 1179 hypothetical protein - none -
fig|6666666.230098.peg.2319 CDS CYYO01000006.1 92268 93389 3 + 1122 capsular polysaccharide biosynthesis protein Rhamnose containing glycans
fig|6666666.230098.peg.2320 CDS CYYO01000006.1 93398 94357 2 + 960 Beta-1,3-glucosyltransferase LOS core oligosaccharide biosynthesis
fig|6666666.230098.peg.2321 CDS CYYO01000006.1 94369 95190 1 + 822 putative glycosyltransferase - none -
fig|6666666.230098.peg.2322 CDS CYYO01000006.1 95198 96283 2 + 1086 Gll1779 protein - none -
fig|6666666.230098.peg.2323 CDS CYYO01000006.1 96364 97500 1 + 1137 Related to F420H2-dehydrogenase, beta subunit - none -
fig|6666666.230098.peg.2324 CDS CYYO01000006.1 97490 98080 2 + 591 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) CBSS-296591.1.peg.2330;
N-linked Glycosylation in Bacteria
fig|6666666.230098.peg.2325 CDS CYYO01000006.1 98791 99393 1 + 603 Lipopolysaccharide biosynthesis protein RffA - none -
fig|6666666.230098.peg.2326 CDS CYYO01000006.1 99558 100061 3 + 504 hypothetical protein - none -
fig|6666666.230098.peg.2327 CDS CYYO01000006.1 101990 100263 -2 - 1728 Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.230098.peg.2328 CDS CYYO01000006.1 103399 102032 -1 - 1368 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) Ammonia assimilation;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.230098.peg.2329 CDS CYYO01000006.1 108025 103475 -1 - 4551 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) Ammonia assimilation;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.230098.peg.2330 CDS CYYO01000006.1 108394 110238 1 + 1845 Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) Inteins;
Sialic Acid Metabolism;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
fig|6666666.230098.peg.2331 CDS CYYO01000006.1 110385 112268 3 + 1884 Amidophosphoribosyltransferase (EC 2.4.2.14) Colicin V and Bacteriocin Production Cluster;
De Novo Purine Biosynthesis
fig|6666666.230098.peg.2332 CDS CYYO01000006.1 112277 113353 2 + 1077 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) De Novo Pyrimidine Synthesis;
Macromolecular synthesis operon
fig|6666666.230098.peg.2333 CDS CYYO01000006.1 113565 116807 3 + 3243 Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) De Novo Pyrimidine Synthesis;
Macromolecular synthesis operon
fig|6666666.230098.peg.2334 CDS CYYO01000006.1 116845 117393 1 + 549 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) DNA repair, bacterial
fig|6666666.230098.peg.2335 CDS CYYO01000006.1 118289 117396 -2 - 894 Transcriptional regulator, AraC family - none -
fig|6666666.230098.peg.2336 CDS CYYO01000006.1 118481 119743 2 + 1263 Type I secretion system, outer membrane component LapE - none -
fig|6666666.230098.peg.2337 CDS CYYO01000006.1 119778 120668 3 + 891 FIG00938133: hypothetical protein - none -
fig|6666666.230098.peg.2338 CDS CYYO01000006.1 120646 122103 1 + 1458 Lipid A export ATP-binding/permease protein MsbA - none -
fig|6666666.230098.peg.2339 CDS CYYO01000006.1 122192 122079 -2 - 114 hypothetical protein - none -
fig|6666666.230098.peg.2340 CDS CYYO01000006.1 122151 123254 3 + 1104 ABC transport system, permease component YbhR - none -
fig|6666666.230098.peg.2341 CDS CYYO01000006.1 123367 124482 1 + 1116 ABC-type multidrug transport system, permease component - none -
fig|6666666.230098.peg.2342 CDS CYYO01000006.1 124795 125931 1 + 1137 Acyltransferase - none -
fig|6666666.230098.peg.2343 CDS CYYO01000006.1 126386 126012 -2 - 375 Small heat shock protein - none -
fig|6666666.230098.peg.2344 CDS CYYO01000006.1 127168 126701 -1 - 468 Ser-tRNA(Ala) deacylase; Gly-tRNA(Ala) deacylase - none -
fig|6666666.230098.peg.2345 CDS CYYO01000006.1 128564 127203 -2 - 1362 FIG00417958: hypothetical protein - none -
fig|6666666.230098.peg.2346 CDS CYYO01000006.1 128493 128636 3 + 144 hypothetical protein - none -
fig|6666666.230098.peg.2347 CDS CYYO01000006.1 128711 130369 2 + 1659 Regulatory protein SusR Cellulosome
fig|6666666.230098.peg.2348 CDS CYYO01000006.1 130551 130420 -3 - 132 hypothetical protein - none -
fig|6666666.230098.peg.2349 CDS CYYO01000006.1 130655 133621 2 + 2967 SusC, outer membrane protein involved in starch binding Cellulosome
fig|6666666.230098.peg.2350 CDS CYYO01000006.1 133621 135126 1 + 1506 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.230098.peg.2351 CDS CYYO01000006.1 135146 136642 2 + 1497 FIG00403304: hypothetical protein - none -
fig|6666666.230098.peg.2352 CDS CYYO01000006.1 136656 138461 3 + 1806 dextranase precursor - none -
fig|6666666.230098.peg.2353 CDS CYYO01000006.1 138496 140994 1 + 2499 Alpha-xylosidase (EC 3.2.1.-) Xylose utilization
fig|6666666.230098.peg.2354 CDS CYYO01000006.1 141016 143169 1 + 2154 Alpha-glucosidase SusB (EC 3.2.1.20) Cellulosome
fig|6666666.230098.peg.2355 CDS CYYO01000006.1 145180 143513 -1 - 1668 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) Biotin biosynthesis
fig|6666666.230098.peg.2356 CDS CYYO01000006.1 146747 145296 -2 - 1452 Na(+)/H(+) antiporter - none -
fig|6666666.230098.peg.2357 CDS CYYO01000006.1 148149 146842 -3 - 1308 Sensor histidine kinase - none -
fig|6666666.230098.peg.2358 CDS CYYO01000006.1 149509 148139 -1 - 1371 Two-component system response regulator - none -
fig|6666666.230098.peg.2359 CDS CYYO01000006.1 150431 149820 -2 - 612 FIG00403603: hypothetical protein - none -
fig|6666666.230098.peg.2360 CDS CYYO01000006.1 151353 150532 -3 - 822 putative calcineurin superfamily phosphohydrolase - none -
fig|6666666.230098.peg.2361 CDS CYYO01000006.1 151623 153938 3 + 2316 ABC transporter permease protein - none -
fig|6666666.230098.peg.2362 CDS CYYO01000006.1 153963 154646 3 + 684 ABC transporter ATP-binding protein - none -
fig|6666666.230098.peg.2363 CDS CYYO01000006.1 154823 154677 -2 - 147 hypothetical protein - none -
fig|6666666.230098.peg.2364 CDS CYYO01000006.1 154899 156971 3 + 2073 ABC transporter permease protein - none -
fig|6666666.230098.peg.2365 CDS CYYO01000006.1 156991 159294 1 + 2304 ABC transporter permease protein - none -
fig|6666666.230098.peg.2366 CDS CYYO01000006.1 160801 159446 -1 - 1356 Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps Multidrug Resistance Efflux Pumps;
Riboflavin, FMN and FAD metabolism in plants
fig|6666666.230098.peg.2367 CDS CYYO01000006.1 160842 161567 3 + 726 putative phosphatase/phosphohexomutase - none -
fig|6666666.230098.peg.2368 CDS CYYO01000006.1 161647 162465 1 + 819 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) Coenzyme A Biosynthesis;
Coenzyme A Biosynthesis cluster
fig|6666666.230098.peg.2369 CDS CYYO01000006.1 162494 163423 2 + 930 Major facilitator family transporter - none -
fig|6666666.230098.peg.2370 CDS CYYO01000006.1 163770 163399 -3 - 372 Diacylglycerol kinase (EC 2.7.1.107) Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Riboflavin synthesis cluster
fig|6666666.230098.peg.2371 CDS CYYO01000006.1 166006 163787 -1 - 2220 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I Stringent Response, (p)ppGpp metabolism
fig|6666666.230098.peg.2372 CDS CYYO01000006.1 166112 167629 2 + 1518 Ribosylnicotinamide kinase (EC 2.7.1.22) homolog / Unknown conserved in Flavobacteria - none -
fig|6666666.230098.peg.2373 CDS CYYO01000006.1 167768 168934 2 + 1167 Phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-) De Novo Purine Biosynthesis
fig|6666666.230098.peg.2374 CDS CYYO01000006.1 169498 169004 -1 - 495 hypothetical protein - none -
fig|6666666.230098.peg.2375 CDS CYYO01000006.1 170416 169583 -1 - 834 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148) A Gammaproteobacteria Cluster Relating to Translation;
Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.230098.peg.2376 CDS CYYO01000006.1 170651 172285 2 + 1635 Replicative DNA helicase (EC 3.6.1.-) - none -
fig|6666666.230098.peg.2377 CDS CYYO01000006.1 176916 172444 -3 - 4473 FIG00937153: hypothetical protein - none -
fig|6666666.230098.peg.2378 CDS CYYO01000006.1 177121 178143 1 + 1023 TsaD/Kae1/Qri7 protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Macromolecular synthesis operon;
YgjD and YeaZ
fig|6666666.230098.peg.2379 CDS CYYO01000006.1 178157 178624 2 + 468 Molybdopterin binding motif, CinA N-terminal domain / C-terminal domain of CinA type S NAD and NADP cofactor biosynthesis global;
NAD and NADP cofactor biosynthesis global;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster
fig|6666666.230098.peg.2380 CDS CYYO01000006.1 178746 179006 3 + 261 LSU ribosomal protein L28p - none -
fig|6666666.230098.peg.2381 CDS CYYO01000006.1 179027 179215 2 + 189 LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-independent - none -
fig|6666666.230098.peg.2382 CDS CYYO01000006.1 179230 179388 1 + 159 FIG00402702: hypothetical protein - none -
fig|6666666.230098.peg.2383 CDS CYYO01000006.1 179639 180598 2 + 960 Signal recognition particle receptor protein FtsY (=alpha subunit) (TC 3.A.5.1.1) Bacterial Cell Division;
Bacterial signal recognition particle (SRP);
Universal GTPases
fig|6666666.230098.peg.2384 CDS CYYO01000006.1 180664 181893 1 + 1230 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase Methylthiotransferases;
Ribosomal protein S12p Asp methylthiotransferase
fig|6666666.230098.peg.2385 CDS CYYO01000006.1 181972 182244 1 + 273 Integration host factor alpha subunit DNA structural proteins, bacterial
fig|6666666.230098.peg.2386 CDS CYYO01000006.1 182272 183453 1 + 1182 putative integration host factor IHF alpha subunit - none -
fig|6666666.230098.peg.2387 CDS CYYO01000006.1 183648 184643 3 + 996 MoxR-like ATPase in aerotolerance operon Aerotolerance operon in Bacteroides and potentially orthologous operons in other organisms
fig|6666666.230098.peg.2388 CDS CYYO01000006.1 184812 185681 3 + 870 hypothetical protein PA3071 Aerotolerance operon in Bacteroides and potentially orthologous operons in other organisms
fig|6666666.230098.peg.2389 CDS CYYO01000006.1 185689 186768 1 + 1080 FIG00936810: hypothetical protein - none -
fig|6666666.230098.peg.2390 CDS CYYO01000006.1 186864 187847 3 + 984 BatA (Bacteroides aerotolerance operon) Aerotolerance operon in Bacteroides and potentially orthologous operons in other organisms
fig|6666666.230098.peg.2391 CDS CYYO01000006.1 187928 188956 2 + 1029 BatB Aerotolerance operon in Bacteroides and potentially orthologous operons in other organisms
fig|6666666.230098.peg.2392 CDS CYYO01000006.1 188962 189663 1 + 702 BatC Aerotolerance operon in Bacteroides and potentially orthologous operons in other organisms
fig|6666666.230098.peg.2393 CDS CYYO01000006.1 189970 191529 1 + 1560 BatD Aerotolerance operon in Bacteroides and potentially orthologous operons in other organisms
fig|6666666.230098.peg.2394 CDS CYYO01000006.1 191546 192385 2 + 840 BatE Aerotolerance operon in Bacteroides and potentially orthologous operons in other organisms
fig|6666666.230098.peg.2395 CDS CYYO01000006.1 192629 192910 2 + 282 FIG00898612: hypothetical protein - none -
fig|6666666.230098.peg.2396 CDS CYYO01000006.1 192991 194121 1 + 1131 UspA - none -
fig|6666666.230098.peg.2397 CDS CYYO01000006.1 195551 194310 -2 - 1242 putative tetratricopeptide repeat family protein - none -
fig|6666666.230098.peg.2398 CDS CYYO01000006.1 197960 195582 -2 - 2379 DNA gyrase subunit A (EC 5.99.1.3) Cell Division Subsystem including YidCD;
DNA gyrase subunits;
DNA replication cluster 1;
DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.230098.peg.2399 CDS CYYO01000006.1 198412 200940 1 + 2529 ATP-dependent Clp protease ATP-binding subunit ClpA ClpAS cluster;
Proteolysis in bacteria, ATP-dependent;
Ribosome recycling related cluster
fig|6666666.230098.peg.2400 CDS CYYO01000006.1 201052 203100 1 + 2049 Chaperone protein HtpG Protein chaperones
fig|6666666.230098.peg.2401 CDS CYYO01000006.1 203282 205579 2 + 2298 putative patatin-like phospholipase - none -
fig|6666666.230098.peg.2402 CDS CYYO01000006.1 207213 206320 -3 - 894 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.230098.peg.2403 CDS CYYO01000006.1 209314 207317 -1 - 1998 DNA ligase (EC 6.5.1.2) DNA Repair Base Excision
fig|6666666.230098.peg.2404 CDS CYYO01000006.1 209404 210081 1 + 678 tRNA (Guanine37-N1) -methyltransferase (EC 2.1.1.31) RNA methylation;
Ribosome biogenesis bacterial;
tRNA modification Bacteria
fig|6666666.230098.peg.2405 CDS CYYO01000006.1 211086 210175 -3 - 912 Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1) De Novo Pyrimidine Synthesis
fig|6666666.230098.peg.2406 CDS CYYO01000006.1 211850 211074 -2 - 777 Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1) De Novo Pyrimidine Synthesis
fig|6666666.230098.peg.2407 CDS CYYO01000006.1 212405 211968 -2 - 438 FIG00939128: hypothetical protein - none -
fig|6666666.230098.peg.2408 CDS CYYO01000006.1 214359 213340 -3 - 1020 DNA polymerase III delta subunit (EC 2.7.7.7) - none -
fig|6666666.230098.peg.2409 CDS CYYO01000006.1 215177 214401 -2 - 777 AMP nucleosidase (EC 3.2.2.4) Purine conversions
fig|6666666.230098.peg.2410 CDS CYYO01000006.1 215242 215691 1 + 450 FIG00936906: hypothetical protein - none -
fig|6666666.230098.peg.2411 CDS CYYO01000006.1 216612 215722 -3 - 891 Beta-lactamase (EC 3.5.2.6) Beta-lactamase
fig|6666666.230098.peg.2412 CDS CYYO01000006.1 219863 216750 -2 - 3114 RND efflux system, inner membrane transporter CmeB Multidrug Resistance Efflux Pumps
fig|6666666.230098.peg.2413 CDS CYYO01000006.1 220980 219889 -3 - 1092 Membrane fusion protein of RND family multidrug efflux pump Multidrug Resistance Efflux Pumps
fig|6666666.230098.peg.2414 CDS CYYO01000006.1 222394 221018 -1 - 1377 RND efflux system, outer membrane lipoprotein CmeC Multidrug Resistance Efflux Pumps
fig|6666666.230098.peg.2415 CDS CYYO01000006.1 223339 222545 -1 - 795 FIG00414651: hypothetical protein - none -
fig|6666666.230098.peg.2416 CDS CYYO01000006.1 224519 223353 -2 - 1167 FIG00406678: hypothetical protein - none -
fig|6666666.230098.peg.2417 CDS CYYO01000006.1 225504 224665 -3 - 840 FIG137478: Hypothetical protein tRNA modification Bacteria
fig|6666666.230098.peg.2418 CDS CYYO01000006.1 226604 225510 -2 - 1095 FIG137478: Hypothetical protein YbgI - none -
fig|6666666.230098.peg.2419 CDS CYYO01000006.1 226793 227569 2 + 777 FIG00412714: hypothetical protein - none -
fig|6666666.230098.peg.2420 CDS CYYO01000006.1 227594 228004 2 + 411 FIG00402962: hypothetical protein - none -
fig|6666666.230098.peg.2421 CDS CYYO01000006.1 228816 228007 -3 - 810 YbbM seven transmembrane helix protein Broadly distributed proteins not in subsystems
fig|6666666.230098.peg.2422 CDS CYYO01000006.1 229451 228828 -2 - 624 YbbL ABC transporter ATP-binding protein Broadly distributed proteins not in subsystems
fig|6666666.230098.peg.2423 CDS CYYO01000006.1 229544 230080 2 + 537 Ferredoxin domain containing protein - none -
fig|6666666.230098.peg.2424 CDS CYYO01000006.1 230219 231334 2 + 1116 Agmatine deiminase (EC 3.5.3.12) Arginine and Ornithine Degradation;
Polyamine Metabolism
fig|6666666.230098.peg.2425 CDS CYYO01000006.1 231375 232262 3 + 888 N-carbamoylputrescine amidase (3.5.1.53) Arginine and Ornithine Degradation;
Polyamine Metabolism
fig|6666666.230098.peg.2426 CDS CYYO01000006.1 232669 232289 -1 - 381 FIG00406468: hypothetical protein - none -
fig|6666666.230098.peg.2427 CDS CYYO01000006.1 234448 232691 -1 - 1758 Aspartyl-tRNA synthetase (EC 6.1.1.12) tRNA aminoacylation, Asp and Asn
fig|6666666.230098.peg.2428 CDS CYYO01000006.1 235623 234580 -3 - 1044 Transcription regulator [contains diacylglycerol kinase catalytic domain] - none -
fig|6666666.230098.peg.2429 CDS CYYO01000006.1 235832 235620 -2 - 213 hypothetical protein - none -
fig|6666666.230098.peg.2430 CDS CYYO01000006.1 235831 237018 1 + 1188 8-amino-7-oxononanoate synthase (EC 2.3.1.47) Biotin biosynthesis;
Biotin biosynthesis Experimental
fig|6666666.230098.peg.2431 CDS CYYO01000006.1 237118 237924 1 + 807 putative lipoprotein - none -
fig|6666666.230098.peg.2432 CDS CYYO01000006.1 238268 238954 2 + 687 FIG00405116: hypothetical protein - none -
fig|6666666.230098.peg.2433 CDS CYYO01000006.1 243224 238932 -2 - 4293 hypothetical protein - none -
fig|6666666.230098.peg.2434 CDS CYYO01000006.1 245134 243305 -1 - 1830 hypothetical protein - none -
fig|6666666.230098.peg.2435 CDS CYYO01000006.1 245492 245337 -2 - 156 hypothetical protein - none -
fig|6666666.230098.peg.2436 CDS CYYO01000006.1 246044 245757 -2 - 288 putative ryanodine receptor - none -
fig|6666666.230098.peg.2437 CDS CYYO01000006.1 246080 246202 2 + 123 hypothetical protein - none -
fig|6666666.230098.peg.2438 CDS CYYO01000006.1 246878 246204 -2 - 675 ABC transporter ATP-binding protein YvcR - none -
fig|6666666.230098.peg.2439 CDS CYYO01000006.1 249166 246917 -1 - 2250 putative ABC transporter permease - none -
fig|6666666.230098.peg.2440 CDS CYYO01000006.1 251697 249298 -3 - 2400 ABC transporter, permease protein - none -
fig|6666666.230098.peg.2441 CDS CYYO01000006.1 254091 251716 -3 - 2376 probable ABC transporter permease - none -
fig|6666666.230098.peg.2442 CDS CYYO01000006.1 256508 254103 -2 - 2406 Probable ABC transporter permease - none -
fig|6666666.230098.peg.2443 CDS CYYO01000006.1 257770 256520 -1 - 1251 ABC transporter permease - none -
fig|6666666.230098.peg.2444 CDS CYYO01000006.1 259427 257940 -2 - 1488 Outer membrane protein assembly factor YaeT precursor Llipid A biosynthesis cluster
fig|6666666.230098.peg.2445 CDS CYYO01000006.1 259630 259460 -1 - 171 hypothetical protein - none -
fig|6666666.230098.peg.2446 CDS CYYO01000006.1 259646 261019 2 + 1374 Two-component system response regulator - none -
fig|6666666.230098.peg.2447 CDS CYYO01000006.1 261016 261981 1 + 966 Two-component system sensor histidine kinase - none -
fig|6666666.230098.peg.2448 CDS CYYO01000006.1 262911 262204 -3 - 708 tRNA (adenine37-N(6))-methyltransferase TrmN6 (EC 2.1.1.223) RNA methylation
fig|6666666.230098.peg.2449 CDS CYYO01000006.1 263083 265563 1 + 2481 ATP-dependent protease La (EC 3.4.21.53) Type I Proteolysis in bacteria, ATP-dependent
fig|6666666.230098.peg.2450 CDS CYYO01000006.1 265560 266690 3 + 1131 tRNA-guanine transglycosylase (EC 2.4.2.29) CBSS-211586.1.peg.2832;
Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.230098.peg.2451 CDS CYYO01000006.1 266696 267823 2 + 1128 membrane protein, putative - none -
fig|6666666.230098.peg.2452 CDS CYYO01000006.1 268597 268097 -1 - 501 FIG00402940: hypothetical protein - none -
fig|6666666.230098.peg.2453 CDS CYYO01000006.1 268874 270103 2 + 1230 Phosphoserine phosphatase (EC 3.1.3.3) Glycine and Serine Utilization;
Serine Biosynthesis;
Serine Biosynthesis
fig|6666666.230098.peg.2454 CDS CYYO01000006.1 270232 271518 1 + 1287 ATP-dependent RNA helicase - none -
fig|6666666.230098.peg.2455 CDS CYYO01000006.1 272355 271555 -3 - 801 FIG00406495: hypothetical protein - none -
fig|6666666.230098.peg.2456 CDS CYYO01000006.1 273706 272393 -1 - 1314 UDP-glucose dehydrogenase (EC 1.1.1.22) - none -
fig|6666666.230098.peg.2457 CDS CYYO01000006.1 274258 273710 -1 - 549 dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) Capsular heptose biosynthesis;
Rhamnose containing glycans;
dTDP-rhamnose synthesis
fig|6666666.230098.peg.2458 CDS CYYO01000006.1 275681 274263 -2 - 1419 FIG00403031: hypothetical protein - none -
fig|6666666.230098.peg.2459 CDS CYYO01000006.1 275915 277069 2 + 1155 FIG00403302: hypothetical protein - none -
fig|6666666.230098.peg.2460 CDS CYYO01000006.1 277120 277653 1 + 534 FHA domain protein - none -
fig|6666666.230098.peg.2461 CDS CYYO01000006.1 279210 277762 -3 - 1449 Altronate oxidoreductase (EC 1.1.1.58) D-Galacturonate and D-Glucuronate Utilization
fig|6666666.230098.peg.2462 CDS CYYO01000006.1 280311 279250 -3 - 1062 hypothetical protein - none -
fig|6666666.230098.peg.2463 CDS CYYO01000006.1 280545 281951 3 + 1407 Uronate isomerase (EC 5.3.1.12) D-Galacturonate and D-Glucuronate Utilization
fig|6666666.230098.peg.2464 CDS CYYO01000006.1 282683 281994 -2 - 690 Hydrolase, haloacid delahogenase-like family - none -
fig|6666666.230098.peg.2465 CDS CYYO01000006.1 282891 284273 3 + 1383 Di-/tripeptide transporter Proton-dependent Peptide Transporters
fig|6666666.230098.peg.2466 CDS CYYO01000006.1 284356 285159 1 + 804 metallo-beta-lactamase family protein - none -
fig|6666666.230098.peg.2467 CDS CYYO01000006.1 285541 285657 1 + 117 hypothetical protein - none -
fig|6666666.230098.peg.2468 CDS CYYO01000006.1 285650 286207 2 + 558 NAD(P)H oxidoreductase YRKL (EC 1.6.99.-) @ Putative NADPH-quinone reductase (modulator of drug activity B) @ Flavodoxin 2 Flavodoxin;
Flavodoxin
fig|6666666.230098.peg.2469 CDS CYYO01000006.1 286325 286191 -2 - 135 hypothetical protein - none -
fig|6666666.230098.peg.2470 CDS CYYO01000006.1 286314 288602 3 + 2289 Alpha,alpha-trehalose-phosphate synthase [UDP-forming] (EC 2.4.1.15) / Trehalose-6-phosphate phosphatase (EC 3.1.3.12) Trehalose Biosynthesis;
Trehalose Biosynthesis
fig|6666666.230098.peg.2471 CDS CYYO01000006.1 288686 290398 2 + 1713 Glucoamylase (EC 3.2.1.3) Maltose and Maltodextrin Utilization;
Trehalose Biosynthesis
fig|6666666.230098.peg.2472 CDS CYYO01000006.1 290644 290528 -1 - 117 hypothetical protein - none -
fig|6666666.230098.peg.2473 CDS CYYO01000006.1 290595 292091 3 + 1497 Ferredoxin-type protein NapG (periplasmic nitrate reductase) Nitrate and nitrite ammonification
fig|6666666.230098.peg.2474 CDS CYYO01000006.1 292137 293513 3 + 1377 Fe-S oxidoreductase - none -
fig|6666666.230098.peg.2475 CDS CYYO01000006.1 293563 293931 1 + 369 FIG00407892: hypothetical protein - none -
fig|6666666.230098.peg.2476 CDS CYYO01000006.1 295656 293956 -3 - 1701 Integral membrane protein - none -
fig|6666666.230098.peg.2477 CDS CYYO01000006.1 296797 295643 -1 - 1155 Outer membrane protein/protective antigen OMA87 - none -
fig|6666666.230098.peg.2478 CDS CYYO01000006.1 297057 298331 3 + 1275 NADH dehydrogenase (EC 1.6.99.3) Respiratory dehydrogenases 1;
Riboflavin synthesis cluster
fig|6666666.230098.peg.2479 CDS CYYO01000006.1 298382 298825 2 + 444 DoxX family protein - none -
fig|6666666.230098.peg.2480 CDS CYYO01000006.1 298958 299518 2 + 561 FIG00406097: hypothetical protein - none -
fig|6666666.230098.peg.2481 CDS CYYO01000006.1 301909 299600 -1 - 2310 FIG00898528: hypothetical protein - none -
fig|6666666.230098.peg.2482 CDS CYYO01000006.1 302092 302814 1 + 723 tRNA (guanosine(18)-2@1-O)-methyltransferase (EC 2.1.1.34) RNA methylation;
tRNA modification Bacteria
fig|6666666.230098.peg.2483 CDS CYYO01000006.1 304020 303094 -3 - 927 FIG00405766: hypothetical protein - none -
fig|6666666.230098.peg.2484 CDS CYYO01000006.1 304553 304017 -2 - 537 Lipoprotein signal peptidase (EC 3.4.23.36) Lipoprotein Biosynthesis;
Signal peptidase
fig|6666666.230098.peg.2485 CDS CYYO01000006.1 305032 304652 -1 - 381 DnaK suppressor protein, putative - none -
fig|6666666.230098.peg.2486 CDS CYYO01000006.1 308554 305066 -1 - 3489 Isoleucyl-tRNA synthetase (EC 6.1.1.5) tRNA aminoacylation, Ile
fig|6666666.230098.peg.2487 CDS CYYO01000006.1 308874 309788 3 + 915 Methyl-directed repair DNA adenine methylase (EC 2.1.1.72) DNA repair, bacterial
fig|6666666.230098.peg.2488 CDS CYYO01000006.1 309795 310655 3 + 861 Type II restriction enzyme DpnII (EC 3.1.21.4) (Endonuclease DpnII) (R.DpnII) - none -
fig|6666666.230098.peg.2489 CDS CYYO01000006.1 310664 311185 2 + 522 hypothetical protein - none -
fig|6666666.230098.peg.2490 CDS CYYO01000006.1 311182 312054 1 + 873 DNA modification methyltransferase (EC 2.1.1.-) - none -
fig|6666666.230098.peg.2491 CDS CYYO01000006.1 313135 312329 -1 - 807 hypothetical protein - none -
fig|6666666.230098.peg.2492 CDS CYYO01000006.1 313183 313311 1 + 129 hypothetical protein - none -
fig|6666666.230098.peg.2493 CDS CYYO01000006.1 314885 313353 -2 - 1533 Aliphatic amidase AmiE (EC 3.5.1.4) - none -
fig|6666666.230098.peg.2494 CDS CYYO01000006.1 316565 315078 -2 - 1488 D-xylose proton-symporter XylE Xylose utilization
fig|6666666.230098.peg.2495 CDS CYYO01000006.1 317996 316680 -2 - 1317 Xylose isomerase (EC 5.3.1.5) Xylose utilization
fig|6666666.230098.peg.2496 CDS CYYO01000006.1 319580 318102 -2 - 1479 Xylulose kinase (EC 2.7.1.17) Xylose utilization
fig|6666666.230098.peg.2497 CDS CYYO01000006.1 320359 319628 -1 - 732 Hypothetical Nudix-like regulator - none -
fig|6666666.230098.peg.2498 CDS CYYO01000006.1 320674 320546 -1 - 129 hypothetical protein - none -
fig|6666666.230098.peg.2499 CDS CYYO01000006.1 320758 321645 1 + 888 Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39) Fatty Acid Biosynthesis FASII
fig|6666666.230098.peg.2500 CDS CYYO01000006.1 321744 322295 3 + 552 FIG00403486: hypothetical protein - none -
fig|6666666.230098.peg.2501 CDS CYYO01000006.1 322531 322728 1 + 198 Sulfur carrier protein ThiS Thiamin biosynthesis
fig|6666666.230098.peg.2502 CDS CYYO01000006.1 322764 323384 3 + 621 Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) 5-FCL-like protein;
Thiamin biosynthesis
fig|6666666.230098.peg.2503 CDS CYYO01000006.1 323396 324187 2 + 792 Thiazole biosynthesis protein ThiG Thiamin biosynthesis
fig|6666666.230098.peg.2504 CDS CYYO01000006.1 324345 326027 3 + 1683 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) - none -
fig|6666666.230098.peg.2505 CDS CYYO01000006.1 326048 327181 2 + 1134 2-iminoacetate synthase (ThiH) (EC 4.1.99.19) - none -
fig|6666666.230098.peg.2506 CDS CYYO01000006.1 327217 327912 1 + 696 Sulfur carrier protein adenylyltransferase ThiF Thiamin biosynthesis
fig|6666666.230098.peg.2507 CDS CYYO01000006.1 327931 328524 1 + 594 Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) 5-FCL-like protein;
Thiamin biosynthesis
fig|6666666.230098.peg.2508 CDS CYYO01000006.1 328553 329380 2 + 828 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) - none -
fig|6666666.230098.peg.2509 CDS CYYO01000006.1 330094 329489 -1 - 606 hypothetical protein - none -
fig|6666666.230098.peg.2510 CDS CYYO01000006.1 330360 331415 3 + 1056 Ferredoxin Soluble cytochromes and functionally related electron carriers
fig|6666666.230098.peg.2511 CDS CYYO01000006.1 331467 331847 3 + 381 hypothetical protein - none -
fig|6666666.230098.peg.2512 CDS CYYO01000006.1 331829 331999 2 + 171 hypothetical protein - none -
fig|6666666.230098.peg.2513 CDS CYYO01000006.1 332285 333094 2 + 810 UPF0028 protein YchK Broadly distributed proteins not in subsystems
fig|6666666.230098.peg.2514 CDS CYYO01000006.1 333127 334824 1 + 1698 Alpha-amylase (EC 3.2.1.1) Maltose and Maltodextrin Utilization;
Trehalose Biosynthesis
fig|6666666.230098.peg.2515 CDS CYYO01000006.1 335159 334929 -2 - 231 FIG00412253: hypothetical protein - none -
fig|6666666.230098.peg.2516 CDS CYYO01000006.1 335495 336160 2 + 666 FIG00403581: hypothetical protein - none -
fig|6666666.230098.peg.2517 CDS CYYO01000006.1 336195 336641 3 + 447 probable beta-D-galactosidase Galactosylceramide and Sulfatide metabolism
fig|6666666.230098.peg.2518 CDS CYYO01000006.1 336673 338682 1 + 2010 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) Glycogen metabolism;
Trehalose Biosynthesis
fig|6666666.230098.peg.2519 CDS CYYO01000006.1 339468 338755 -3 - 714 FIG00414131: hypothetical protein - none -
fig|6666666.230098.peg.2520 CDS CYYO01000006.1 339711 339911 3 + 201 FIG00413734: hypothetical protein - none -
fig|6666666.230098.peg.2521 CDS CYYO01000006.1 340223 341185 2 + 963 Esterase - none -
fig|6666666.230098.peg.2522 CDS CYYO01000006.1 341694 343085 3 + 1392 Integrase IntN1 - none -
fig|6666666.230098.peg.2523 CDS CYYO01000006.1 343459 343178 -1 - 282 hypothetical protein - none -
fig|6666666.230098.peg.2524 CDS CYYO01000006.1 343999 343673 -1 - 327 hypothetical protein - none -
fig|6666666.230098.peg.2525 CDS CYYO01000006.1 346275 344785 -3 - 1491 hypothetical protein - none -
fig|6666666.230098.peg.2526 CDS CYYO01000006.1 346844 346374 -2 - 471 hypothetical protein - none -
fig|6666666.230098.peg.2527 CDS CYYO01000006.1 347230 346829 -1 - 402 Phage protein inside capsid D - none -
fig|6666666.230098.peg.2528 CDS CYYO01000006.1 347599 347258 -1 - 342 hypothetical protein - none -
fig|6666666.230098.peg.2529 CDS CYYO01000006.1 348050 347610 -2 - 441 hypothetical protein - none -
fig|6666666.230098.peg.2530 CDS CYYO01000006.1 348694 348110 -1 - 585 hypothetical protein - none -
fig|6666666.230098.peg.2531 CDS CYYO01000006.1 349731 348700 -3 - 1032 hypothetical protein - none -
fig|6666666.230098.peg.2532 CDS CYYO01000006.1 351602 349737 -2 - 1866 Phage tail fiber protein Phage tail fiber proteins
fig|6666666.230098.peg.2533 CDS CYYO01000006.1 351903 351619 -3 - 285 hypothetical protein - none -
fig|6666666.230098.peg.2534 CDS CYYO01000006.1 356752 351923 -1 - 4830 FIG00407302: hypothetical protein - none -
fig|6666666.230098.peg.2535 CDS CYYO01000007.1 967 671 -1 - 297 hypothetical protein - none -
fig|6666666.230098.peg.2536 CDS CYYO01000007.1 1141 1704 1 + 564 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases CBSS-258594.1.peg.3339;
cAMP signaling in bacteria
fig|6666666.230098.peg.2537 CDS CYYO01000007.1 1805 2959 2 + 1155 Acyltransferase - none -
fig|6666666.230098.peg.2538 CDS CYYO01000007.1 3420 3055 -3 - 366 FIG00406892: hypothetical protein - none -
fig|6666666.230098.peg.2539 CDS CYYO01000007.1 6188 3612 -2 - 2577 FIG00405611: hypothetical protein - none -
fig|6666666.230098.peg.2540 CDS CYYO01000007.1 7902 6193 -3 - 1710 Beta-hexosaminidase (EC 3.2.1.52) - none -
fig|6666666.230098.peg.2541 CDS CYYO01000007.1 10612 8003 -1 - 2610 Beta-glucosidase (EC 3.2.1.21) - none -
fig|6666666.230098.peg.2542 CDS CYYO01000007.1 11840 10650 -2 - 1191 FIG00411772: hypothetical protein - none -
fig|6666666.230098.peg.2543 CDS CYYO01000007.1 13052 11856 -2 - 1197 FIG00417587: hypothetical protein - none -
fig|6666666.230098.peg.2544 CDS CYYO01000007.1 14626 13136 -1 - 1491 Putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.230098.peg.2545 CDS CYYO01000007.1 17890 14639 -1 - 3252 TonB family protein / TonB-dependent receptor Ton and Tol transport systems
fig|6666666.230098.peg.2546 CDS CYYO01000007.1 20541 17980 -3 - 2562 FIG00405611: hypothetical protein - none -
fig|6666666.230098.peg.2547 CDS CYYO01000007.1 21978 20569 -3 - 1410 Arabinose-proton symporter L-Arabinose utilization
fig|6666666.230098.peg.2548 CDS CYYO01000007.1 22778 21993 -2 - 786 Glucose-6-phosphate isomerase (EC 5.3.1.9) Glycolysis and Gluconeogenesis
fig|6666666.230098.peg.2549 CDS CYYO01000007.1 24534 22771 -3 - 1764 mannose-6-phosphate isomerase, class I - none -
fig|6666666.230098.peg.2550 CDS CYYO01000007.1 25471 24518 -1 - 954 Glucokinase (EC 2.7.1.2) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis
fig|6666666.230098.peg.2551 CDS CYYO01000007.1 26043 25474 -3 - 570 Glucose-6-phosphate isomerase, archaeal (EC 5.3.1.9) - none -
fig|6666666.230098.peg.2552 CDS CYYO01000007.1 27104 26220 -2 - 885 transcriptional regulator - none -
fig|6666666.230098.peg.2553 CDS CYYO01000007.1 27292 28182 1 + 891 putative transporter - none -
fig|6666666.230098.peg.2554 CDS CYYO01000007.1 28828 28169 -1 - 660 FIG00408484: hypothetical protein - none -
fig|6666666.230098.peg.2555 CDS CYYO01000007.1 29295 28825 -3 - 471 GAF domain-containing protein, involved in signal transduction - none -
fig|6666666.230098.peg.2556 CDS CYYO01000007.1 30206 29307 -2 - 900 putative permease - none -
fig|6666666.230098.peg.2557 CDS CYYO01000007.1 30935 30276 -2 - 660 tRNA pseudouridine synthase A (EC 4.2.1.70) Colicin V and Bacteriocin Production Cluster;
RNA pseudouridine syntheses;
tRNA modification Bacteria;
tRNA processing
fig|6666666.230098.peg.2558 CDS CYYO01000007.1 31264 31142 -1 - 123 hypothetical protein - none -
fig|6666666.230098.peg.2559 CDS CYYO01000007.1 31236 31832 3 + 597 FIG00937167: hypothetical protein - none -
fig|6666666.230098.peg.2560 CDS CYYO01000007.1 32413 31850 -1 - 564 hypothetical protein - none -
fig|6666666.230098.peg.2561 CDS CYYO01000007.1 33654 32443 -3 - 1212 NAD(P)HX epimerase / NAD(P)HX dehydratase YjeE;
YjeE
fig|6666666.230098.peg.2562 CDS CYYO01000007.1 34405 35943 1 + 1539 Di-/tripeptide transporter Proton-dependent Peptide Transporters
fig|6666666.230098.peg.2563 CDS CYYO01000007.1 36012 36521 3 + 510 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) Cell division-ribosomal stress proteins cluster;
Folate biosynthesis cluster;
Purine conversions
fig|6666666.230098.peg.2564 CDS CYYO01000007.1 36564 37136 3 + 573 Adenylate kinase (EC 2.7.4.3) Purine conversions
fig|6666666.230098.peg.2565 CDS CYYO01000007.1 37151 38332 2 + 1182 GTP-binding protein Obg CBSS-176279.3.peg.868;
Universal GTPases
fig|6666666.230098.peg.2566 CDS CYYO01000007.1 38329 39156 1 + 828 COG1496: Uncharacterized conserved protein - none -
fig|6666666.230098.peg.2567 CDS CYYO01000007.1 39156 39821 3 + 666 FIG00935912: hypothetical protein - none -
fig|6666666.230098.peg.2568 CDS CYYO01000007.1 39822 40541 3 + 720 Cell wall endopeptidase, family M23/M37 - none -
fig|6666666.230098.peg.2569 CDS CYYO01000007.1 40551 41552 3 + 1002 Phosphate starvation-inducible protein PhoH, predicted ATPase CBSS-56780.10.peg.1536;
CBSS-56780.10.peg.1536;
Glycyl-tRNA synthetase containing cluster;
Inteins;
Phosphate metabolism;
Phosphate metabolism;
tRNA-methylthiotransferase containing cluster;
tRNA-methylthiotransferase containing cluster
fig|6666666.230098.peg.2570 CDS CYYO01000007.1 41580 42521 3 + 942 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) De Novo Purine Biosynthesis
fig|6666666.230098.peg.2571 CDS CYYO01000007.1 42522 43259 3 + 738 2-heptaprenyl-1,4-naphthoquinone methyltransferase (EC 2.1.1.163) - none -
fig|6666666.230098.peg.2572 CDS CYYO01000007.1 43291 43845 1 + 555 FIG00406579: hypothetical protein - none -
fig|6666666.230098.peg.2573 CDS CYYO01000007.1 43894 44640 1 + 747 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.230098.peg.2574 CDS CYYO01000007.1 44640 45635 3 + 996 Hydrolases of the alpha/beta superfamily - none -
fig|6666666.230098.peg.2575 CDS CYYO01000007.1 45676 46584 1 + 909 Beta-propeller domains of methanol dehydrogenase type - none -
fig|6666666.230098.peg.2576 CDS CYYO01000007.1 46756 47337 1 + 582 LemA family protein - none -
fig|6666666.230098.peg.2577 CDS CYYO01000007.1 47468 48619 2 + 1152 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) De Novo Purine Biosynthesis
fig|6666666.230098.peg.2578 CDS CYYO01000007.1 48624 49736 3 + 1113 Peptide chain release factor 1 A Gammaproteobacteria Cluster Relating to Translation;
CBSS-216600.3.peg.802;
Translation termination factors bacterial
fig|6666666.230098.peg.2579 CDS CYYO01000007.1 49771 50601 1 + 831 Orotidine 5@1-phosphate decarboxylase (EC 4.1.1.23) De Novo Pyrimidine Synthesis;
Riboflavin synthesis cluster
fig|6666666.230098.peg.2580 CDS CYYO01000007.1 50608 51834 1 + 1227 Deoxyguanosinetriphosphate triphosphohydrolase (EC 3.1.5.1) - none -
fig|6666666.230098.peg.2581 CDS CYYO01000007.1 51919 52959 1 + 1041 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC 2.3.1.191) - none -
fig|6666666.230098.peg.2582 CDS CYYO01000007.1 52963 54348 1 + 1386 N-acetylglucosamine deacetylase (EC 3.5.1.-) / 3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabZ form (EC 4.2.1.59) Fatty Acid Biosynthesis FASII;
Llipid A biosynthesis cluster
fig|6666666.230098.peg.2583 CDS CYYO01000007.1 54486 55262 3 + 777 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase (EC 2.3.1.129) Llipid A biosynthesis cluster
fig|6666666.230098.peg.2584 CDS CYYO01000007.1 55311 55865 3 + 555 FIG00897033: hypothetical protein - none -
fig|6666666.230098.peg.2585 CDS CYYO01000007.1 55974 56879 3 + 906 tRNA dimethylallyltransferase (EC 2.5.1.75) tRNA modification Bacteria;
tRNA processing
fig|6666666.230098.peg.2586 CDS CYYO01000007.1 58093 56855 -1 - 1239 FIG00407219: hypothetical protein - none -
fig|6666666.230098.peg.2587 CDS CYYO01000007.1 58944 58195 -3 - 750 Thiol:disulfide oxidoreductase related to ResA Biogenesis of c-type cytochromes;
CBSS-196164.1.peg.461
fig|6666666.230098.peg.2588 CDS CYYO01000007.1 61059 58978 -3 - 2082 Regulatory sensor-transducer, BlaR1/MecR1 family / TonB-dependent receptor Ton and Tol transport systems
fig|6666666.230098.peg.2589 CDS CYYO01000007.1 62975 61110 -2 - 1866 Thiol:disulfide interchange protein tlpA - none -
fig|6666666.230098.peg.2590 CDS CYYO01000007.1 63367 63005 -1 - 363 Transcriptional repressor, BlaI/MecI family - none -
fig|6666666.230098.peg.2591 CDS CYYO01000007.1 63578 64282 2 + 705 FIG00898025: hypothetical protein - none -
fig|6666666.230098.peg.2592 CDS CYYO01000007.1 64272 64886 3 + 615 Transcriptional regulator - none -
fig|6666666.230098.peg.2593 CDS CYYO01000007.1 67168 65318 -1 - 1851 Putative cytochrome C-type biogenesis protein Biogenesis of c-type cytochromes
fig|6666666.230098.peg.2594 CDS CYYO01000007.1 68564 67398 -2 - 1167 RidA/YER057c/UK114 superfamily, group 7, YjgH-like protein - none -
fig|6666666.230098.peg.2595 CDS CYYO01000007.1 69334 68618 -1 - 717 FIG00896915: hypothetical protein - none -
fig|6666666.230098.peg.2596 CDS CYYO01000007.1 70570 69359 -1 - 1212 FIG00897404: hypothetical protein - none -
fig|6666666.230098.peg.2597 CDS CYYO01000007.1 72036 70600 -3 - 1437 Probable thiol oxidoreductase with 2 cytochrome c heme-binding sites - none -
fig|6666666.230098.peg.2598 CDS CYYO01000007.1 73294 72143 -1 - 1152 FIG00405865: hypothetical protein - none -
fig|6666666.230098.peg.2599 CDS CYYO01000007.1 74706 73324 -3 - 1383 FIG00896529: hypothetical protein - none -
fig|6666666.230098.peg.2600 CDS CYYO01000007.1 74995 74882 -1 - 114 hypothetical protein - none -
fig|6666666.230098.peg.2601 CDS CYYO01000007.1 75230 75024 -2 - 207 FIG00418171: hypothetical protein - none -
fig|6666666.230098.peg.2602 CDS CYYO01000007.1 76655 75297 -2 - 1359 Hydrolase (HAD superfamily) - none -
fig|6666666.230098.peg.2603 CDS CYYO01000007.1 77624 76668 -2 - 957 Membrane protease subunits, stomatin/prohibitin homologs - none -
fig|6666666.230098.peg.2604 CDS CYYO01000007.1 80416 77822 -1 - 2595 Beta-glucosidase (EC 3.2.1.21) - none -
fig|6666666.230098.peg.2605 CDS CYYO01000007.1 82913 80505 -2 - 2409 FIG00409332: hypothetical protein - none -
fig|6666666.230098.peg.2606 CDS CYYO01000007.1 84717 83083 -3 - 1635 FIG00414760: hypothetical protein - none -
fig|6666666.230098.peg.2607 CDS CYYO01000007.1 85912 84743 -1 - 1170 Cystathionine beta-lyase, Bsu PatB (EC 4.4.1.8) - none -
fig|6666666.230098.peg.2608 CDS CYYO01000007.1 86756 86142 -2 - 615 FIG00415643: hypothetical protein - none -
fig|6666666.230098.peg.2609 CDS CYYO01000007.1 87646 86753 -1 - 894 1,4-dihydroxy-2-naphthoate polyprenyltransferase (EC 2.5.1.74) - none -
fig|6666666.230098.peg.2610 CDS CYYO01000007.1 87734 88534 2 + 801 HMP-PP hydrolase (pyridoxal phosphatase) Cof, detected in genetic screen for thiamin metabolic genes (PMID:15292217) - none -
fig|6666666.230098.peg.2611 CDS CYYO01000007.1 88547 90289 2 + 1743 putative helicase - none -
fig|6666666.230098.peg.2612 CDS CYYO01000007.1 90358 90972 1 + 615 Hypothetical YciO protein, TsaC/YrdC paralog - none -
fig|6666666.230098.peg.2613 CDS CYYO01000007.1 91049 92071 2 + 1023 membrane protein, putative - none -
fig|6666666.230098.peg.2614 CDS CYYO01000007.1 93281 92076 -2 - 1206 FIG00403110: hypothetical protein - none -
fig|6666666.230098.peg.2615 CDS CYYO01000007.1 94188 93340 -3 - 849 serine/threonine kinase - none -
fig|6666666.230098.peg.2616 CDS CYYO01000007.1 95597 94287 -2 - 1311 putative hemolysin secretion protein - none -
fig|6666666.230098.peg.2617 CDS CYYO01000007.1 97805 95601 -2 - 2205 ABC transporter ATP-binding protein - none -
fig|6666666.230098.peg.2618 CDS CYYO01000007.1 99041 97806 -2 - 1236 FIG00414945: hypothetical protein - none -
fig|6666666.230098.peg.2619 CDS CYYO01000007.1 100513 99062 -1 - 1452 putative Fe-S oxidoreductase - none -
fig|6666666.230098.peg.2620 CDS CYYO01000007.1 101845 100517 -1 - 1329 FIG00411283: hypothetical protein - none -
fig|6666666.230098.peg.2621 CDS CYYO01000007.1 103099 102290 -1 - 810 FIG00415953: hypothetical protein - none -
fig|6666666.230098.peg.2622 CDS CYYO01000007.1 104354 103305 -2 - 1050 FIG00408819: hypothetical protein - none -
fig|6666666.230098.peg.2623 CDS CYYO01000007.1 104705 104403 -2 - 303 hypothetical protein - none -
fig|6666666.230098.peg.2624 CDS CYYO01000007.1 104704 104844 1 + 141 hypothetical protein - none -
fig|6666666.230098.peg.2625 CDS CYYO01000007.1 106653 104959 -3 - 1695 FIG00414546: hypothetical protein - none -
fig|6666666.230098.peg.2626 CDS CYYO01000007.1 106766 106650 -2 - 117 hypothetical protein - none -
fig|6666666.230098.peg.2627 CDS CYYO01000007.1 108105 107455 -3 - 651 FIG00415953: hypothetical protein - none -
fig|6666666.230098.peg.2628 CDS CYYO01000007.1 111360 108154 -3 - 3207 RND multidrug efflux transporter; Acriflavin resistance protein Multidrug Resistance Efflux Pumps
fig|6666666.230098.peg.2629 CDS CYYO01000007.1 112832 111360 -2 - 1473 outer membrane protein TolC, putative - none -
fig|6666666.230098.peg.2630 CDS CYYO01000007.1 115888 112829 -1 - 3060 Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA Cobalt-zinc-cadmium resistance;
Cobalt-zinc-cadmium resistance
fig|6666666.230098.peg.2631 CDS CYYO01000007.1 117032 115959 -2 - 1074 Probable Co/Zn/Cd efflux system membrane fusion protein Cobalt-zinc-cadmium resistance
fig|6666666.230098.peg.2632 CDS CYYO01000007.1 118806 117157 -3 - 1650 FIG00896341: hypothetical protein - none -
fig|6666666.230098.peg.2633 CDS CYYO01000007.1 119660 118788 -2 - 873 Signal peptidase I (EC 3.4.21.89) Signal peptidase
fig|6666666.230098.peg.2634 CDS CYYO01000007.1 121564 119681 -1 - 1884 FIG00403120: hypothetical protein - none -
fig|6666666.230098.peg.2635 CDS CYYO01000007.1 122490 121618 -3 - 873 FIG00899164: hypothetical protein - none -
fig|6666666.230098.peg.2636 CDS CYYO01000007.1 123519 122518 -3 - 1002 hypothetical protein - none -
fig|6666666.230098.peg.2637 CDS CYYO01000007.1 124507 123509 -1 - 999 hypothetical protein - none -
fig|6666666.230098.peg.2638 CDS CYYO01000007.1 124890 124630 -3 - 261 hypothetical protein - none -
fig|6666666.230098.peg.2639 CDS CYYO01000007.1 126080 125100 -2 - 981 FIG00898411: hypothetical protein - none -
fig|6666666.230098.peg.2640 CDS CYYO01000007.1 126376 126158 -1 - 219 hypothetical protein - none -
fig|6666666.230098.peg.2641 CDS CYYO01000007.1 127303 126527 -1 - 777 hypothetical protein - none -
fig|6666666.230098.peg.2642 CDS CYYO01000007.1 128443 127598 -1 - 846 FIG00412531: hypothetical protein - none -
fig|6666666.230098.peg.2643 CDS CYYO01000007.1 129186 128548 -3 - 639 Thymidylate synthase (EC 2.1.1.45) Folate Biosynthesis
fig|6666666.230098.peg.2644 CDS CYYO01000007.1 129507 129265 -3 - 243 FIG00403730: hypothetical protein - none -
fig|6666666.230098.peg.2645 CDS CYYO01000007.1 130172 129687 -2 - 486 FIG00407789: hypothetical protein - none -
fig|6666666.230098.peg.2646 CDS CYYO01000007.1 131473 130169 -1 - 1305 Maturase-related protein - none -
fig|6666666.230098.peg.2647 CDS CYYO01000007.1 131793 131590 -3 - 204 hypothetical protein - none -
fig|6666666.230098.peg.2648 CDS CYYO01000007.1 138727 131990 -1 - 6738 Beta-galactosidase (EC 3.2.1.23) Galactosylceramide and Sulfatide metabolism;
Lactose and Galactose Uptake and Utilization;
Lactose utilization
fig|6666666.230098.peg.2649 CDS CYYO01000007.1 142770 138754 -3 - 4017 FIG00407302: hypothetical protein - none -
fig|6666666.230098.peg.2650 CDS CYYO01000007.1 143281 142817 -1 - 465 FIG00408295: hypothetical protein - none -
fig|6666666.230098.peg.2651 CDS CYYO01000007.1 147674 143283 -2 - 4392 FIG00897168: hypothetical protein - none -
fig|6666666.230098.peg.2652 CDS CYYO01000007.1 147875 147675 -2 - 201 FIG00409316: hypothetical protein - none -
fig|6666666.230098.peg.2653 CDS CYYO01000007.1 148405 147914 -1 - 492 FIG00407991: hypothetical protein - none -
fig|6666666.230098.peg.2654 CDS CYYO01000007.1 148984 148409 -1 - 576 FIG00412175: hypothetical protein - none -
fig|6666666.230098.peg.2655 CDS CYYO01000007.1 149217 148981 -3 - 237 hypothetical protein - none -
fig|6666666.230098.peg.2656 CDS CYYO01000007.1 149755 149270 -1 - 486 FIG00409900: hypothetical protein - none -
fig|6666666.230098.peg.2657 CDS CYYO01000007.1 150163 149777 -1 - 387 hypothetical protein - none -
fig|6666666.230098.peg.2658 CDS CYYO01000007.1 150640 150176 -1 - 465 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) Murein Hydrolases;
Recycling of Peptidoglycan Amino Acids
fig|6666666.230098.peg.2659 CDS CYYO01000007.1 151863 150640 -3 - 1224 FIG00407597: hypothetical protein - none -
fig|6666666.230098.peg.2660 CDS CYYO01000007.1 152894 151875 -2 - 1020 Prophage Clp protease-like protein cAMP signaling in bacteria
fig|6666666.230098.peg.2661 CDS CYYO01000007.1 153109 153555 1 + 447 FIG00938452: hypothetical protein - none -
fig|6666666.230098.peg.2662 CDS CYYO01000007.1 153557 155125 2 + 1569 Phage protein - none -
fig|6666666.230098.peg.2663 CDS CYYO01000007.1 155144 155569 2 + 426 FIG00937200: hypothetical protein - none -
fig|6666666.230098.peg.2664 CDS CYYO01000007.1 155571 156959 3 + 1389 Mu-like prophage FluMu protein gp29 - none -
fig|6666666.230098.peg.2665 CDS CYYO01000007.1 156977 158392 2 + 1416 Large repetitive protein - none -
fig|6666666.230098.peg.2666 CDS CYYO01000007.1 158644 158375 -1 - 270 hypothetical protein - none -
fig|6666666.230098.peg.2667 CDS CYYO01000007.1 158677 159309 1 + 633 FIG00406375: hypothetical protein - none -
fig|6666666.230098.peg.2668 CDS CYYO01000007.1 159338 159760 2 + 423 FIG00408262: hypothetical protein - none -
fig|6666666.230098.peg.2669 CDS CYYO01000007.1 160039 159770 -1 - 270 FIG00406026: hypothetical protein - none -
fig|6666666.230098.peg.2670 CDS CYYO01000007.1 160329 160147 -3 - 183 FIG00407626: hypothetical protein - none -
fig|6666666.230098.peg.2671 CDS CYYO01000007.1 161015 160365 -2 - 651 FIG00406346: hypothetical protein - none -
fig|6666666.230098.peg.2672 CDS CYYO01000007.1 161480 161037 -2 - 444 FIG00403622: hypothetical protein - none -
fig|6666666.230098.peg.2673 CDS CYYO01000007.1 161623 161483 -1 - 141 hypothetical protein - none -
fig|6666666.230098.peg.2674 CDS CYYO01000007.1 161861 161664 -2 - 198 FIG00414211: hypothetical protein - none -
fig|6666666.230098.peg.2675 CDS CYYO01000007.1 162406 161894 -1 - 513 FIG00418115: hypothetical protein - none -
fig|6666666.230098.peg.2676 CDS CYYO01000007.1 162732 162427 -3 - 306 hypothetical protein - none -
fig|6666666.230098.peg.2677 CDS CYYO01000007.1 163657 162752 -1 - 906 hypothetical protein - none -
fig|6666666.230098.peg.2678 CDS CYYO01000007.1 163897 163661 -1 - 237 FIG00414320: hypothetical protein - none -
fig|6666666.230098.peg.2679 CDS CYYO01000007.1 164571 163894 -3 - 678 FIG00405988: hypothetical protein - none -
fig|6666666.230098.peg.2680 CDS CYYO01000007.1 164855 164574 -2 - 282 FIG00409720: hypothetical protein - none -
fig|6666666.230098.peg.2681 CDS CYYO01000007.1 165826 164969 -1 - 858 FIG00409580: hypothetical protein - none -
fig|6666666.230098.peg.2682 CDS CYYO01000007.1 167913 165874 -3 - 2040 FIG00937960: hypothetical protein - none -
fig|6666666.230098.peg.2683 CDS CYYO01000007.1 168135 167929 -3 - 207 hypothetical protein - none -
fig|6666666.230098.peg.2684 CDS CYYO01000007.1 168340 168140 -1 - 201 hypothetical protein - none -
fig|6666666.230098.peg.2685 CDS CYYO01000007.1 168651 168460 -3 - 192 FIG00410869: hypothetical protein - none -
fig|6666666.230098.peg.2686 CDS CYYO01000007.1 168880 169206 1 + 327 hypothetical protein - none -
fig|6666666.230098.peg.2687 CDS CYYO01000007.1 170375 170163 -2 - 213 hypothetical protein - none -
fig|6666666.230098.peg.2688 CDS CYYO01000007.1 172226 170661 -2 - 1566 FIG00417169: hypothetical protein - none -
fig|6666666.230098.peg.2689 CDS CYYO01000007.1 173504 172692 -2 - 813 Glucosamine-6-phosphate deaminase (EC 3.5.99.6) Sialic Acid Metabolism
fig|6666666.230098.peg.2690 CDS CYYO01000007.1 174782 173583 -2 - 1200 Alkyldihydroxyacetonephosphate synthase (EC 2.5.1.26) - none -
fig|6666666.230098.peg.2691 CDS CYYO01000007.1 175773 174844 -3 - 930 COG1242: Predicted Fe-S oxidoreductase - none -
fig|6666666.230098.peg.2692 CDS CYYO01000007.1 175763 175894 2 + 132 hypothetical protein - none -
fig|6666666.230098.peg.2693 CDS CYYO01000007.1 176089 177048 1 + 960 Glucokinase (EC 2.7.1.2) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis
fig|6666666.230098.peg.2694 CDS CYYO01000007.1 177041 178192 2 + 1152 FIG00406514: hypothetical protein - none -
fig|6666666.230098.peg.2695 CDS CYYO01000007.1 178224 178985 3 + 762 UPF0309 protein SCO4393 - none -
fig|6666666.230098.peg.2696 CDS CYYO01000007.1 179203 179024 -1 - 180 hypothetical protein - none -
fig|6666666.230098.peg.2697 CDS CYYO01000007.1 179187 181400 3 + 2214 Dipeptidyl peptidase IV - none -
fig|6666666.230098.peg.2698 CDS CYYO01000007.1 181400 182281 2 + 882 Lipoate synthase Lipoic acid metabolism;
Lipoic acid synthesis cluster
fig|6666666.230098.peg.2699 CDS CYYO01000007.1 182427 183446 3 + 1020 Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2) Isoprenoid Biosynthesis;
Isoprenoid Biosynthesis: Interconversions
fig|6666666.230098.peg.2700 CDS CYYO01000007.1 184116 183412 -3 - 705 Tetrapyrrole methylase family protein - none -
fig|6666666.230098.peg.2701 CDS CYYO01000007.1 184973 184116 -2 - 858 Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9) Fatty Acid Biosynthesis FASII
fig|6666666.230098.peg.2702 CDS CYYO01000007.1 185335 185988 1 + 654 Phosphoglycolate phosphatase (EC 3.1.3.18) 2-phosphoglycolate salvage;
Glycolate, glyoxylate interconversions
fig|6666666.230098.peg.2703 CDS CYYO01000007.1 187307 186144 -2 - 1164 Protein-tyrosine-phosphatase (EC 3.1.3.48) - none -
fig|6666666.230098.peg.2704 CDS CYYO01000007.1 188792 187326 -2 - 1467 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.230098.peg.2705 CDS CYYO01000007.1 192121 188813 -1 - 3309 putative outer membrane protein probably involved in nutrient binding - none -
fig|6666666.230098.peg.2706 CDS CYYO01000007.1 193363 192188 -1 - 1176 putative anti-sigma factor - none -
fig|6666666.230098.peg.2707 CDS CYYO01000007.1 194034 193468 -3 - 567 RNA polymerase sigma-70 factor Transcription initiation, bacterial sigma factors
fig|6666666.230098.peg.2708 CDS CYYO01000007.1 194502 195893 3 + 1392 PTS system, galactitol-specific IIC component (EC 2.7.1.69) - none -
fig|6666666.230098.peg.2709 CDS CYYO01000007.1 195921 196877 3 + 957 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) D-Galacturonate and D-Glucuronate Utilization
fig|6666666.230098.peg.2710 CDS CYYO01000007.1 196920 198509 3 + 1590 Hexuronate transporter D-Galacturonate and D-Glucuronate Utilization
fig|6666666.230098.peg.2711 CDS CYYO01000007.1 202265 198831 -2 - 3435 DNA helicase - none -
fig|6666666.230098.peg.2712 CDS CYYO01000007.1 203089 202262 -1 - 828 Twin-arginine translocation protein TatC Cluster-based Subsystem Grouping Hypotheticals - perhaps Proteosome Related;
Twin-arginine translocation system
fig|6666666.230098.peg.2713 CDS CYYO01000007.1 203436 203221 -3 - 216 Twin-arginine translocation protein TatA Cluster-based Subsystem Grouping Hypotheticals - perhaps Proteosome Related;
Twin-arginine translocation system
fig|6666666.230098.peg.2714 CDS CYYO01000007.1 206073 203548 -3 - 2526 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase (EC 6.3.2.10) / Alanine racemase (EC 5.1.1.1) Alanine biosynthesis;
Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo;
Pyruvate Alanine Serine Interconversions
fig|6666666.230098.peg.2715 CDS CYYO01000007.1 207059 206049 -2 - 1011 FIG00404313: hypothetical protein - none -
fig|6666666.230098.peg.2716 CDS CYYO01000007.1 208298 207201 -2 - 1098 FIG00410004: hypothetical protein - none -
fig|6666666.230098.peg.2717 CDS CYYO01000007.1 208575 208805 3 + 231 hypothetical protein - none -
fig|6666666.230098.peg.2718 CDS CYYO01000007.1 208865 210769 2 + 1905 1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis;
Pyridoxin (Vitamin B6) Biosynthesis;
Thiamin biosynthesis
fig|6666666.230098.peg.2719 CDS CYYO01000007.1 210836 212176 2 + 1341 Trk system potassium uptake protein TrkA Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Hyperosmotic potassium uptake;
Potassium homeostasis;
Potassium homeostasis
fig|6666666.230098.peg.2720 CDS CYYO01000007.1 212198 213649 2 + 1452 Potassium uptake protein TrkH Hyperosmotic potassium uptake;
Potassium homeostasis;
Potassium homeostasis;
Transport system clustering with HemG
fig|6666666.230098.peg.2721 CDS CYYO01000007.1 213753 214124 3 + 372 hypothetical protein - none -
fig|6666666.230098.peg.2722 CDS CYYO01000007.1 214236 214586 3 + 351 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) NADH ubiquinone oxidoreductase;
Respiratory Complex I
fig|6666666.230098.peg.2723 CDS CYYO01000007.1 214577 215158 2 + 582 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) NADH ubiquinone oxidoreductase;
Respiratory Complex I
fig|6666666.230098.peg.2724 CDS CYYO01000007.1 215174 216763 2 + 1590 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) NADH ubiquinone oxidoreductase;
NADH ubiquinone oxidoreductase;
Respiratory Complex I;
Respiratory Complex I
fig|6666666.230098.peg.2725 CDS CYYO01000007.1 216939 216805 -3 - 135 hypothetical protein - none -
fig|6666666.230098.peg.2726 CDS CYYO01000007.1 216904 217980 1 + 1077 NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3) NADH ubiquinone oxidoreductase;
Respiratory Complex I
fig|6666666.230098.peg.2727 CDS CYYO01000007.1 218038 218541 1 + 504 NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3) NADH ubiquinone oxidoreductase;
Respiratory Complex I
fig|6666666.230098.peg.2728 CDS CYYO01000007.1 218572 219084 1 + 513 NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3) NADH ubiquinone oxidoreductase;
Respiratory Complex I
fig|6666666.230098.peg.2729 CDS CYYO01000007.1 219090 219398 3 + 309 NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3) NADH ubiquinone oxidoreductase;
Respiratory Complex I
fig|6666666.230098.peg.2730 CDS CYYO01000007.1 219457 221370 1 + 1914 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) NADH ubiquinone oxidoreductase;
Respiratory Complex I
fig|6666666.230098.peg.2731 CDS CYYO01000007.1 221422 222906 1 + 1485 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) NADH ubiquinone oxidoreductase;
Respiratory Complex I
fig|6666666.230098.peg.2732 CDS CYYO01000007.1 223028 224467 2 + 1440 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) NADH ubiquinone oxidoreductase;
Respiratory Complex I
fig|6666666.230098.peg.2733 CDS CYYO01000007.1 227425 224603 -1 - 2823 Two-component system sensor histidine kinase - none -
fig|6666666.230098.peg.2734 CDS CYYO01000007.1 227621 230326 2 + 2706 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.230098.peg.2735 CDS CYYO01000007.1 230455 231627 1 + 1173 FIG00403577: hypothetical protein - none -
fig|6666666.230098.peg.2736 CDS CYYO01000007.1 232173 231748 -3 - 426 FIG00410367: hypothetical protein - none -
fig|6666666.230098.peg.2737 CDS CYYO01000007.1 233786 232509 -2 - 1278 Small-conductance mechanosensitive channel - none -
fig|6666666.230098.peg.2738 CDS CYYO01000007.1 234827 233814 -2 - 1014 Methionine ABC transporter ATP-binding protein Methionine Biosynthesis;
Methionine Degradation
fig|6666666.230098.peg.2739 CDS CYYO01000007.1 235669 234839 -1 - 831 Methionine ABC transporter ATP-binding protein Methionine Biosynthesis;
Methionine Degradation
fig|6666666.230098.peg.2740 CDS CYYO01000007.1 235809 236720 3 + 912 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.230098.peg.2741 CDS CYYO01000007.1 237303 236737 -3 - 567 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases CBSS-258594.1.peg.3339;
cAMP signaling in bacteria
fig|6666666.230098.peg.2742 CDS CYYO01000007.1 238449 237346 -3 - 1104 putative periplasmic protein kinase ArgK and related GTPases of G3E family G3E family of P-loop GTPases (metallocenter biosynthesis)
fig|6666666.230098.peg.2743 CDS CYYO01000007.1 239572 238499 -1 - 1074 FIG00897161: hypothetical protein - none -
fig|6666666.230098.peg.2744 CDS CYYO01000007.1 245581 239714 -1 - 5868 FIG00403134: hypothetical protein - none -
fig|6666666.230098.peg.2745 CDS CYYO01000007.1 247773 246316 -3 - 1458 Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3) Dipeptidases (EC 3.4.13.-);
Recycling of Peptidoglycan Amino Acids
fig|6666666.230098.peg.2746 CDS CYYO01000007.1 249130 248144 -1 - 987 putative dolichol-P-glucose synthetase - none -
fig|6666666.230098.peg.2747 CDS CYYO01000007.1 249266 250060 2 + 795 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase (EC 2.1.1.182) ECSIG4-SIG7;
RNA methylation;
Ribosome biogenesis bacterial
fig|6666666.230098.peg.2748 CDS CYYO01000007.1 250087 251433 1 + 1347 Magnesium transporter - none -
fig|6666666.230098.peg.2749 CDS CYYO01000007.1 251551 253404 1 + 1854 FIG00896368: hypothetical protein - none -
fig|6666666.230098.peg.2750 CDS CYYO01000007.1 254667 253489 -3 - 1179 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) 5-FCL-like protein;
De Novo Purine Biosynthesis;
De Novo Purine Biosynthesis
fig|6666666.230098.peg.2751 CDS CYYO01000007.1 255138 255497 3 + 360 Ribosomal silencing factor RsfA (former Iojap) - none -
fig|6666666.230098.peg.2752 CDS CYYO01000007.1 255507 257519 3 + 2013 Cell division protein FtsH (EC 3.4.24.-) Bacterial Cell Division;
Cell division-ribosomal stress proteins cluster;
Folate biosynthesis cluster
fig|6666666.230098.peg.2753 CDS CYYO01000007.1 257509 258351 1 + 843 Phosphatidate cytidylyltransferase (EC 2.7.7.41) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.230098.peg.2754 CDS CYYO01000007.1 259173 258469 -3 - 705 FIG00411266: hypothetical protein - none -
fig|6666666.230098.peg.2755 CDS CYYO01000007.1 259270 259151 -1 - 120 hypothetical protein - none -
fig|6666666.230098.peg.2756 CDS CYYO01000007.1 260462 259317 -2 - 1146 Lipid-A-disaccharide synthase (EC 2.4.1.182) Llipid A biosynthesis cluster
fig|6666666.230098.peg.2757 CDS CYYO01000007.1 261251 260487 -2 - 765 5-nucleotidase SurE (EC 3.1.3.5) Housecleaning nucleoside triphosphate pyrophosphatases;
Stationary phase repair cluster
fig|6666666.230098.peg.2758 CDS CYYO01000007.1 261402 261283 -3 - 120 hypothetical protein - none -
fig|6666666.230098.peg.2759 CDS CYYO01000007.1 261409 262845 1 + 1437 FIG00897336: hypothetical protein - none -
fig|6666666.230098.peg.2760 CDS CYYO01000007.1 262891 263364 1 + 474 probable membrane protein NMA1128 - none -
fig|6666666.230098.peg.2761 CDS CYYO01000007.1 263786 264556 2 + 771 Chromosome (plasmid) partitioning protein ParA Bacterial Cell Division;
Bacterial Cytoskeleton;
Cell Division Subsystem including YidCD;
RNA modification and chromosome partitioning cluster
fig|6666666.230098.peg.2762 CDS CYYO01000007.1 264664 265548 1 + 885 Chromosome (plasmid) partitioning protein ParB Bacterial Cytoskeleton;
Cell Division Subsystem including YidCD;
RNA modification and chromosome partitioning cluster
fig|6666666.230098.peg.2763 CDS CYYO01000007.1 265549 266328 1 + 780 FIG00937393: hypothetical protein - none -
fig|6666666.230098.peg.2764 CDS CYYO01000007.1 266360 267676 2 + 1317 Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-) Murein Hydrolases
fig|6666666.230098.peg.2765 CDS CYYO01000007.1 267753 270011 3 + 2259 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II / Guanosine-3@1,5@1-bis(diphosphate) 3@1-pyrophosphohydrolase (EC 3.1.7.2) Stringent Response, (p)ppGpp metabolism;
Stringent Response, (p)ppGpp metabolism
fig|6666666.230098.peg.2766 CDS CYYO01000007.1 270418 270029 -1 - 390 Transcriptional regulator - none -
fig|6666666.230098.peg.2767 CDS CYYO01000007.1 271416 270448 -3 - 969 Peptidase, family M23 (EC 3.4.24.-) - none -
fig|6666666.230098.peg.2768 CDS CYYO01000007.1 272457 271576 -3 - 882 orf; Unknown function - none -
fig|6666666.230098.peg.2769 CDS CYYO01000007.1 275517 274708 -3 - 810 FIG00410196: hypothetical protein - none -
fig|6666666.230098.peg.2770 CDS CYYO01000007.1 276886 275594 -1 - 1293 RecD-like DNA helicase Atu2026 - none -
fig|6666666.230098.peg.2771 CDS CYYO01000007.1 277180 277794 1 + 615 FIG036016: hypothetical protein CBSS-226186.1.peg.3978
fig|6666666.230098.peg.2772 CDS CYYO01000007.1 277813 278592 1 + 780 FIG032012: hypothetical protein CBSS-226186.1.peg.3978
fig|6666666.230098.peg.2773 CDS CYYO01000007.1 278583 279116 3 + 534 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) CBSS-226186.1.peg.3978;
CBSS-266117.6.peg.1260;
CBSS-269801.1.peg.1715;
RNA methylation
fig|6666666.230098.peg.2774 CDS CYYO01000007.1 280616 279177 -2 - 1440 Cardiolipin synthetase (EC 2.7.8.-) Cardiolipin synthesis;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.230098.peg.2775 CDS CYYO01000007.1 283811 280887 -2 - 2925 FIG00897756: hypothetical protein - none -
fig|6666666.230098.peg.2776 CDS CYYO01000007.1 284341 283919 -1 - 423 FIG00404342: hypothetical protein - none -
fig|6666666.230098.peg.2777 CDS CYYO01000007.1 284504 284346 -2 - 159 hypothetical protein - none -
fig|6666666.230098.peg.2778 CDS CYYO01000007.1 284540 285601 2 + 1062 3-dehydroquinate synthase (EC 4.2.3.4) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.230098.peg.2779 CDS CYYO01000007.1 285960 285577 -3 - 384 FIG00407350: hypothetical protein - none -
fig|6666666.230098.peg.2780 CDS CYYO01000007.1 286494 285964 -3 - 531 FIG00414200: hypothetical protein - none -
fig|6666666.230098.peg.2781 CDS CYYO01000007.1 286616 286491 -2 - 126 hypothetical protein - none -
fig|6666666.230098.peg.2782 CDS CYYO01000007.1 286868 287617 2 + 750 FIG00417123: hypothetical protein - none -
fig|6666666.230098.peg.2783 CDS CYYO01000007.1 288875 288222 -2 - 654 hypothetical protein - none -
fig|6666666.230098.peg.2784 CDS CYYO01000008.1 961 569 -1 - 393 FIG00408175: hypothetical protein - none -
fig|6666666.230098.peg.2785 CDS CYYO01000008.1 2211 979 -3 - 1233 Mobile element protein - none -
fig|6666666.230098.peg.2786 CDS CYYO01000008.1 2707 3186 1 + 480 FIG00413911: hypothetical protein - none -
fig|6666666.230098.peg.2787 CDS CYYO01000008.1 3749 3258 -2 - 492 DNA polymerase III epsilon subunit (EC 2.7.7.7) - none -
fig|6666666.230098.peg.2788 CDS CYYO01000008.1 3856 4395 1 + 540 Nudix hydrolase family protein - none -
fig|6666666.230098.peg.2789 CDS CYYO01000008.1 4524 7544 3 + 3021 TPR-domain containing protein - none -
fig|6666666.230098.peg.2790 CDS CYYO01000008.1 7560 9191 3 + 1632 putative TonB-dependent receptor - none -
fig|6666666.230098.peg.2791 CDS CYYO01000008.1 9337 11739 1 + 2403 DNA topoisomerase I (EC 5.99.1.2) CBSS-272943.3.peg.1367;
Conserved gene cluster associated with Met-tRNA formyltransferase;
DNA topoisomerases, Type I, ATP-independent;
Inteins
fig|6666666.230098.peg.2792 CDS CYYO01000008.1 13698 11881 -3 - 1818 Arginyl-tRNA synthetase (EC 6.1.1.19) tRNA aminoacylation, Arg
fig|6666666.230098.peg.2793 CDS CYYO01000008.1 14093 13854 -2 - 240 DNA-binding protein HU-beta DNA structural proteins, bacterial
fig|6666666.230098.peg.2794 CDS CYYO01000008.1 14328 14161 -3 - 168 FIG00416267: hypothetical protein - none -
fig|6666666.230098.peg.2795 CDS CYYO01000008.1 14352 15050 3 + 699 GlpG protein (membrane protein of glp regulon) Glycerol and Glycerol-3-phosphate Uptake and Utilization
fig|6666666.230098.peg.2796 CDS CYYO01000008.1 15031 15921 1 + 891 GlpG protein (membrane protein of glp regulon) Glycerol and Glycerol-3-phosphate Uptake and Utilization
fig|6666666.230098.peg.2797 CDS CYYO01000008.1 16014 17114 3 + 1101 AP endonuclease domain protein - none -
fig|6666666.230098.peg.2798 CDS CYYO01000008.1 17192 19234 2 + 2043 Dipeptidyl carboxypeptidase Dcp (EC 3.4.15.5) Protein degradation
fig|6666666.230098.peg.2799 CDS CYYO01000008.1 19318 22317 1 + 3000 Protein-export membrane protein SecD (TC 3.A.5.1.1) / Protein-export membrane protein SecF (TC 3.A.5.1.1) CBSS-211586.1.peg.2832;
CBSS-211586.1.peg.2832
fig|6666666.230098.peg.2800 CDS CYYO01000008.1 24060 22777 -3 - 1284 Outer membrane efflux protein - none -
fig|6666666.230098.peg.2801 CDS CYYO01000008.1 25498 24080 -1 - 1419 hypothetical protein-signal peptide and transmembrane prediction - none -
fig|6666666.230098.peg.2802 CDS CYYO01000008.1 28650 25495 -3 - 3156 transporter, AcrB/D/F family - none -
fig|6666666.230098.peg.2803 CDS CYYO01000008.1 29774 28650 -2 - 1125 Membrane-fusion protein - none -
fig|6666666.230098.peg.2804 CDS CYYO01000008.1 29860 30741 1 + 882 Transcriptional regulator, AraC family - none -
fig|6666666.230098.peg.2805 CDS CYYO01000008.1 32472 30760 -3 - 1713 Regulatory protein SusR Cellulosome
fig|6666666.230098.peg.2806 CDS CYYO01000008.1 32773 32922 1 + 150 hypothetical protein - none -
fig|6666666.230098.peg.2807 CDS CYYO01000008.1 33280 36477 1 + 3198 SusC, outer membrane protein involved in starch binding Cellulosome
fig|6666666.230098.peg.2808 CDS CYYO01000008.1 36509 38281 2 + 1773 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.230098.peg.2809 CDS CYYO01000008.1 38317 39471 1 + 1155 hypothetical protein - none -
fig|6666666.230098.peg.2810 CDS CYYO01000008.1 39670 42060 1 + 2391 Beta-glucosidase (EC 3.2.1.21) - none -
fig|6666666.230098.peg.2811 CDS CYYO01000008.1 42147 44468 3 + 2322 Periplasmic beta-glucosidase (EC 3.2.1.21) - none -
fig|6666666.230098.peg.2812 CDS CYYO01000008.1 44494 45906 1 + 1413 Endoglucanase (EC 3.2.1.4) Mannose Metabolism
fig|6666666.230098.peg.2813 CDS CYYO01000008.1 45995 48451 2 + 2457 Beta-glucosidase (EC 3.2.1.21) - none -
fig|6666666.230098.peg.2814 CDS CYYO01000008.1 48451 50757 1 + 2307 Alfa-L-rhamnosidase (EC 3.2.1.40) - none -
fig|6666666.230098.peg.2815 CDS CYYO01000008.1 51256 53088 1 + 1833 2-oxoglutarate oxidoreductase, alpha subunit (EC 1.2.7.3) - none -
fig|6666666.230098.peg.2816 CDS CYYO01000008.1 53188 54192 1 + 1005 2-oxoglutarate oxidoreductase, beta subunit (EC 1.2.7.3) - none -
fig|6666666.230098.peg.2817 CDS CYYO01000008.1 54559 54726 1 + 168 FIG00418218: hypothetical protein - none -
fig|6666666.230098.peg.2818 CDS CYYO01000008.1 54969 58205 3 + 3237 SusC, outer membrane protein involved in starch binding Cellulosome
fig|6666666.230098.peg.2819 CDS CYYO01000008.1 58192 59919 1 + 1728 FIG00416872: hypothetical protein - none -
fig|6666666.230098.peg.2820 CDS CYYO01000008.1 60221 61729 2 + 1509 D-alanine--poly(phosphoribitol) ligase subunit 1 (EC 6.1.1.13) Teichoic and lipoteichoic acids biosynthesis
fig|6666666.230098.peg.2821 CDS CYYO01000008.1 61738 61980 1 + 243 Acyl carrier protein Fatty Acid Biosynthesis FASII;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.230098.peg.2822 CDS CYYO01000008.1 61984 63372 1 + 1389 Probable poly(beta-D-mannuronate) O-acetylase (EC 2.3.1.-) - none -
fig|6666666.230098.peg.2823 CDS CYYO01000008.1 63385 64473 1 + 1089 FIG00416332: hypothetical protein - none -
fig|6666666.230098.peg.2824 CDS CYYO01000008.1 65369 66976 2 + 1608 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) Pyruvate metabolism I: anaplerotic reactions, PEP;
Serine-glyoxylate cycle
fig|6666666.230098.peg.2825 CDS CYYO01000008.1 67246 67761 1 + 516 putative NADH dehydrogenase/NAD(P)H nitroreductase - none -
fig|6666666.230098.peg.2826 CDS CYYO01000008.1 69678 67852 -3 - 1827 GTP-binding protein TypA/BipA Universal GTPases
fig|6666666.230098.peg.2827 CDS CYYO01000008.1 69810 70079 3 + 270 SSU ribosomal protein S15p (S13e) CBSS-350688.3.peg.1509;
Ribosome SSU bacterial
fig|6666666.230098.peg.2828 CDS CYYO01000008.1 70215 70099 -3 - 117 hypothetical protein - none -
fig|6666666.230098.peg.2829 CDS CYYO01000008.1 70223 71059 2 + 837 FIG00415662: hypothetical protein - none -
fig|6666666.230098.peg.2830 CDS CYYO01000008.1 71124 71561 3 + 438 FIG00416879: hypothetical protein - none -
fig|6666666.230098.peg.2831 CDS CYYO01000008.1 71618 74029 2 + 2412 putative TonB-dependent receptor - none -
fig|6666666.230098.peg.2832 CDS CYYO01000008.1 74206 74781 1 + 576 Transcriptional regulator, MerR family Cobalt-zinc-cadmium resistance
fig|6666666.230098.peg.2833 CDS CYYO01000008.1 74814 76508 3 + 1695 Acetoacetyl-CoA synthetase (EC 6.2.1.16) / Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) Biotin biosynthesis
fig|6666666.230098.peg.2834 CDS CYYO01000008.1 77096 76605 -2 - 492 S-ribosylhomocysteine lyase (EC 4.4.1.21) / Autoinducer-2 production protein LuxS Methionine Biosynthesis;
Methionine Degradation
fig|6666666.230098.peg.2835 CDS CYYO01000008.1 77825 77121 -2 - 705 5@1-methylthioadenosine nucleosidase (EC 3.2.2.16) / S-adenosylhomocysteine nucleosidase (EC 3.2.2.9) Adenosyl nucleosidases;
Adenosyl nucleosidases;
Methionine Biosynthesis;
Methionine Degradation;
Polyamine Metabolism
fig|6666666.230098.peg.2836 CDS CYYO01000008.1 77970 77857 -3 - 114 hypothetical protein - none -
fig|6666666.230098.peg.2837 CDS CYYO01000008.1 78070 80580 1 + 2511 FIG00896840: hypothetical protein - none -
fig|6666666.230098.peg.2838 CDS CYYO01000008.1 80987 81112 2 + 126 hypothetical protein - none -
fig|6666666.230098.peg.2839 CDS CYYO01000008.1 81266 81607 2 + 342 Ribosome-binding factor A CBSS-138119.3.peg.2719;
CBSS-350688.3.peg.1509;
NusA-TFII Cluster;
Translation initiation factors bacterial
fig|6666666.230098.peg.2840 CDS CYYO01000008.1 81607 82842 1 + 1236 Lipoprotein releasing system transmembrane protein LolC Lipoprotein sorting system
fig|6666666.230098.peg.2841 CDS CYYO01000008.1 83480 82851 -2 - 630 O-methyltransferase family protein [C1] - none -
fig|6666666.230098.peg.2842 CDS CYYO01000008.1 85056 83599 -3 - 1458 Pyruvate kinase (EC 2.7.1.40) Entner-Doudoroff Pathway;
Glycerate metabolism;
Glycolysis and Gluconeogenesis;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.230098.peg.2843 CDS CYYO01000008.1 85457 85077 -2 - 381 3-dehydroquinate dehydratase II (EC 4.2.1.10) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate);
Quinate degradation
fig|6666666.230098.peg.2844 CDS CYYO01000008.1 85615 86568 1 + 954 Phage integrase - none -
fig|6666666.230098.peg.2845 CDS CYYO01000008.1 86777 88399 2 + 1623 Immunoreactive 53 kDa antigen PG123 - none -
fig|6666666.230098.peg.2846 CDS CYYO01000008.1 88511 89584 2 + 1074 Thiol:disulfide interchange protein - none -
fig|6666666.230098.peg.2847 CDS CYYO01000008.1 89622 91160 3 + 1539 MG(2+) CHELATASE FAMILY PROTEIN / ComM-related protein - none -
fig|6666666.230098.peg.2848 CDS CYYO01000008.1 93971 91287 -2 - 2685 Trehalose-6-phosphate hydrolase - none -
fig|6666666.230098.peg.2849 CDS CYYO01000008.1 95194 94025 -1 - 1170 FIG00414347: hypothetical protein - none -
fig|6666666.230098.peg.2850 CDS CYYO01000008.1 97384 95258 -1 - 2127 Alpha-1,2-mannosidase Mannose Metabolism
fig|6666666.230098.peg.2851 CDS CYYO01000008.1 99500 97710 -2 - 1791 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.230098.peg.2852 CDS CYYO01000008.1 102666 99529 -3 - 3138 TonB family protein / TonB-dependent receptor Ton and Tol transport systems
fig|6666666.230098.peg.2853 CDS CYYO01000008.1 104372 102828 -2 - 1545 FIG00411211: hypothetical protein - none -
fig|6666666.230098.peg.2854 CDS CYYO01000008.1 105365 104409 -2 - 957 Ribokinase (EC 2.7.1.15) D-ribose utilization;
Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.230098.peg.2855 CDS CYYO01000008.1 106370 105366 -2 - 1005 L-rhamnose-proton symporter - none -
fig|6666666.230098.peg.2856 CDS CYYO01000008.1 108594 106525 -3 - 2070 FIG00411497: hypothetical protein - none -
fig|6666666.230098.peg.2857 CDS CYYO01000008.1 111249 108697 -3 - 2553 Alpha-mannosidase (EC 3.2.1.24) Mannose Metabolism
fig|6666666.230098.peg.2858 CDS CYYO01000008.1 115343 111315 -2 - 4029 DNA-binding response regulator, AraC family - none -
fig|6666666.230098.peg.2859 CDS CYYO01000008.1 117540 115477 -3 - 2064 Acetyl-CoA synthetase (ADP-forming) alpha and beta chains, putative Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
fig|6666666.230098.peg.2860 CDS CYYO01000008.1 117709 118641 1 + 933 FIG00413160: hypothetical protein - none -
fig|6666666.230098.peg.2861 CDS CYYO01000008.1 119536 118628 -1 - 909 two-component sensor kinase - none -
fig|6666666.230098.peg.2862 CDS CYYO01000008.1 120014 119658 -2 - 357 Two-component system response regulator - none -
fig|6666666.230098.peg.2863 CDS CYYO01000008.1 120416 120030 -2 - 387 Two-component system response regulator - none -
fig|6666666.230098.peg.2864 CDS CYYO01000008.1 121402 120482 -1 - 921 FIG00418272: hypothetical protein - none -
fig|6666666.230098.peg.2865 CDS CYYO01000008.1 121381 121563 1 + 183 hypothetical protein - none -
fig|6666666.230098.peg.2866 CDS CYYO01000008.1 121634 122077 2 + 444 FIG00414833: hypothetical protein - none -
fig|6666666.230098.peg.2867 CDS CYYO01000008.1 123143 122286 -2 - 858 hypothetical protein - none -
fig|6666666.230098.peg.2868 CDS CYYO01000008.1 123304 125346 1 + 2043 Methionyl-tRNA synthetase (EC 6.1.1.10) tRNA aminoacylation, Met
fig|6666666.230098.peg.2869 CDS CYYO01000008.1 125439 126884 3 + 1446 Lipopolysaccharide biosynthesis protein WzxC - none -
fig|6666666.230098.peg.2870 CDS CYYO01000008.1 126881 127786 2 + 906 FIG00417891: hypothetical protein - none -
fig|6666666.230098.peg.2871 CDS CYYO01000008.1 127981 129258 1 + 1278 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC 2.7.7.60) Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis;
Stationary phase repair cluster;
Teichoic and lipoteichoic acids biosynthesis
fig|6666666.230098.peg.2872 CDS CYYO01000008.1 129255 130070 3 + 816 Lipopolysaccharide cholinephosphotransferase LicD1 (EC 2.7.8.-) - none -
fig|6666666.230098.peg.2873 CDS CYYO01000008.1 130067 131083 2 + 1017 protein containing nucleotide-diphospho-sugar transferase domain - none -
fig|6666666.230098.peg.2874 CDS CYYO01000008.1 131124 132389 3 + 1266 Glycosyl transferase, group 1 family protein - none -
fig|6666666.230098.peg.2875 CDS CYYO01000008.1 132382 133128 1 + 747 Glycosyl transferase, group 2 family protein - none -
fig|6666666.230098.peg.2876 CDS CYYO01000008.1 133176 133298 3 + 123 hypothetical protein - none -
fig|6666666.230098.peg.2877 CDS CYYO01000008.1 134110 133394 -1 - 717 NAD-dependent protein deacetylase of SIR2 family Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate;
Redox-dependent regulation of nucleus processes
fig|6666666.230098.peg.2878 CDS CYYO01000008.1 134293 134886 1 + 594 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase
fig|6666666.230098.peg.2879 CDS CYYO01000008.1 134906 135772 2 + 867 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) Peptidyl-prolyl cis-trans isomerase
fig|6666666.230098.peg.2880 CDS CYYO01000008.1 136002 136466 3 + 465 Transcriptional regulator, AsnC family - none -
fig|6666666.230098.peg.2881 CDS CYYO01000008.1 136476 136787 3 + 312 conserved hypothetical protein, putative membrane protein - none -
fig|6666666.230098.peg.2882 CDS CYYO01000008.1 137565 139055 3 + 1491 FIG00409506: hypothetical protein - none -
fig|6666666.230098.peg.2883 CDS CYYO01000008.1 139126 140313 1 + 1188 FIG00411845: hypothetical protein - none -
fig|6666666.230098.peg.2884 CDS CYYO01000008.1 140493 140813 3 + 321 FIG00404570: hypothetical protein - none -
fig|6666666.230098.peg.2885 CDS CYYO01000008.1 140815 142200 1 + 1386 FIG00404128: hypothetical protein - none -
fig|6666666.230098.peg.2886 CDS CYYO01000008.1 142337 142684 2 + 348 FIG00415983: hypothetical protein - none -
fig|6666666.230098.peg.2887 CDS CYYO01000008.1 142735 143118 1 + 384 hypothetical protein - none -
fig|6666666.230098.peg.2888 CDS CYYO01000008.1 143266 143144 -1 - 123 hypothetical protein - none -
fig|6666666.230098.peg.2889 CDS CYYO01000008.1 143435 143809 2 + 375 FIG00407231: hypothetical protein - none -
fig|6666666.230098.peg.2890 CDS CYYO01000008.1 144105 143794 -3 - 312 hypothetical protein - none -
fig|6666666.230098.peg.2891 CDS CYYO01000008.1 144071 145015 2 + 945 conserved hypothetical protein with relaxase/mobilization nuclease domain - none -
fig|6666666.230098.peg.2892 CDS CYYO01000008.1 145088 145582 2 + 495 FIG00412533: hypothetical protein - none -
fig|6666666.230098.peg.2893 CDS CYYO01000008.1 146149 145766 -1 - 384 hypothetical protein - none -
fig|6666666.230098.peg.2894 CDS CYYO01000008.1 148522 146354 -1 - 2169 DNA double-strand break repair Rad50 ATPase Rad50-Mre11 DNA repair cluster
fig|6666666.230098.peg.2895 CDS CYYO01000008.1 148740 148519 -3 - 222 hypothetical protein - none -
fig|6666666.230098.peg.2896 CDS CYYO01000008.1 151039 148754 -1 - 2286 DNA-repair protein - none -
fig|6666666.230098.peg.2897 CDS CYYO01000008.1 152010 151033 -3 - 978 probable serine/threonine protein kinase, putative( EC:2.7.11.1 ) - none -
fig|6666666.230098.peg.2898 CDS CYYO01000008.1 153152 152013 -2 - 1140 hypothetical protein - none -
fig|6666666.230098.peg.2899 CDS CYYO01000008.1 154212 153112 -3 - 1101 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) Cysteine Biosynthesis
fig|6666666.230098.peg.2900 CDS CYYO01000008.1 157424 154215 -2 - 3210 hypothetical protein - none -
fig|6666666.230098.peg.2901 CDS CYYO01000008.1 158259 157414 -3 - 846 hypothetical protein - none -
fig|6666666.230098.peg.2902 CDS CYYO01000008.1 159280 158273 -1 - 1008 FIG00936210: hypothetical protein - none -
fig|6666666.230098.peg.2903 CDS CYYO01000008.1 159878 159273 -2 - 606 hypothetical protein - none -
fig|6666666.230098.peg.2904 CDS CYYO01000008.1 160390 160563 1 + 174 hypothetical protein - none -
fig|6666666.230098.peg.2905 CDS CYYO01000008.1 160903 161040 1 + 138 hypothetical protein - none -
fig|6666666.230098.peg.2906 CDS CYYO01000008.1 161307 161420 3 + 114 DNA repair protein RadC Bacterial cell division cluster;
DNA repair, bacterial
fig|6666666.230098.peg.2907 CDS CYYO01000008.1 161417 161686 2 + 270 Mobile element protein - none -
fig|6666666.230098.peg.2908 CDS CYYO01000008.1 161986 162150 1 + 165 hypothetical protein - none -
fig|6666666.230098.peg.2909 CDS CYYO01000008.1 162122 162535 2 + 414 hypothetical protein - none -
fig|6666666.230098.peg.2910 CDS CYYO01000008.1 163301 162663 -2 - 639 FIG00410926: hypothetical protein - none -
fig|6666666.230098.peg.2911 CDS CYYO01000008.1 163630 163298 -1 - 333 hypothetical protein - none -
fig|6666666.230098.peg.2912 CDS CYYO01000008.1 163969 164385 1 + 417 hypothetical protein - none -
fig|6666666.230098.peg.2913 CDS CYYO01000008.1 164806 165267 1 + 462 Putative two-component system response regulator, no kinase domain - none -
fig|6666666.230098.peg.2914 CDS CYYO01000008.1 165670 165819 1 + 150 hypothetical protein - none -
fig|6666666.230098.peg.2915 CDS CYYO01000008.1 165916 166353 1 + 438 hypothetical protein - none -
fig|6666666.230098.peg.2916 CDS CYYO01000008.1 166356 167570 3 + 1215 Oxaloacetate decarboxylase beta chain (EC 4.1.1.3) @ Methylmalonyl-CoA decarboxylase, beta chain (EC 4.1.1.41) Na+ translocating decarboxylases and related biotin-dependent enzymes;
Na+ translocating decarboxylases and related biotin-dependent enzymes;
Propionyl-CoA to Succinyl-CoA Module;
Pyruvate metabolism I: anaplerotic reactions, PEP
fig|6666666.230098.peg.2917 CDS CYYO01000008.1 167710 168861 1 + 1152 FIG00414220: hypothetical protein - none -
fig|6666666.230098.peg.2918 CDS CYYO01000008.1 168863 169630 2 + 768 D-alanyl-D-alanine dipeptidase (EC 3.4.13.22) - none -
fig|6666666.230098.peg.2919 CDS CYYO01000008.1 169850 171097 2 + 1248 SAM-dependent methyltransferases - none -
fig|6666666.230098.peg.2920 CDS CYYO01000008.1 171371 174139 2 + 2769 TonB-dependent receptor Ton and Tol transport systems
fig|6666666.230098.peg.2921 CDS CYYO01000008.1 174200 175129 2 + 930 Tartrate-resistant acid phosphatase type 5 precursor (EC 3.1.3.2) - none -
fig|6666666.230098.peg.2922 CDS CYYO01000008.1 175312 176601 1 + 1290 FIG00407002: hypothetical protein - none -
fig|6666666.230098.peg.2923 CDS CYYO01000008.1 178416 176611 -3 - 1806 Mechanosensitive ion channel family protein - none -
fig|6666666.230098.peg.2924 CDS CYYO01000008.1 178531 179565 1 + 1035 Sodium-calcium exchanger - none -
fig|6666666.230098.peg.2925 CDS CYYO01000008.1 179716 180852 1 + 1137 FIG00935709: hypothetical protein - none -
fig|6666666.230098.peg.2926 CDS CYYO01000008.1 180970 182904 1 + 1935 Topoisomerase IV subunit B (EC 5.99.1.-) DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones
fig|6666666.230098.peg.2927 CDS CYYO01000008.1 182901 183359 3 + 459 Phosphopantetheine adenylyltransferase (EC 2.7.7.3) CBSS-266117.6.peg.1260;
CBSS-269801.1.peg.1715;
Coenzyme A Biosynthesis
fig|6666666.230098.peg.2928 CDS CYYO01000008.1 183409 185025 1 + 1617 Carboxy-terminal processing protease - none -
fig|6666666.230098.peg.2929 CDS CYYO01000008.1 185710 185108 -1 - 603 Membrane-associated phospholipid phosphatase - none -
fig|6666666.230098.peg.2930 CDS CYYO01000008.1 185855 186718 2 + 864 Transcriptional regulator, AraC family - none -
fig|6666666.230098.peg.2931 CDS CYYO01000008.1 186881 187579 2 + 699 Succinate dehydrogenase cytochrome b subunit Succinate dehydrogenase
fig|6666666.230098.peg.2932 CDS CYYO01000008.1 187616 189562 2 + 1947 Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) Serine-glyoxylate cycle;
Succinate dehydrogenase;
TCA Cycle
fig|6666666.230098.peg.2933 CDS CYYO01000008.1 189596 190351 2 + 756 Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) 5-FCL-like protein;
Serine-glyoxylate cycle;
Succinate dehydrogenase;
TCA Cycle
fig|6666666.230098.peg.2934 CDS CYYO01000008.1 191029 190490 -1 - 540 Transcriptional regulator, AraC family - none -
fig|6666666.230098.peg.2935 CDS CYYO01000008.1 191033 191398 2 + 366 hypothetical protein - none -
fig|6666666.230098.peg.2936 CDS CYYO01000008.1 192470 191502 -2 - 969 FIG00405468: hypothetical protein - none -
fig|6666666.230098.peg.2937 CDS CYYO01000008.1 193472 192516 -2 - 957 FIG00406595: hypothetical protein - none -
fig|6666666.230098.peg.2938 CDS CYYO01000008.1 193825 193496 -1 - 330 FIG00403496: hypothetical protein - none -
fig|6666666.230098.peg.2939 CDS CYYO01000008.1 194548 195351 1 + 804 Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) Glycerol and Glycerol-3-phosphate Uptake and Utilization
fig|6666666.230098.peg.2940 CDS CYYO01000008.1 196402 195371 -1 - 1032 Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake CBSS-272943.3.peg.1367;
Conserved gene cluster associated with Met-tRNA formyltransferase
fig|6666666.230098.peg.2941 CDS CYYO01000008.1 196893 196501 -3 - 393 4-hydroxybenzoyl-CoA thioesterase family active site Ton and Tol transport systems
fig|6666666.230098.peg.2942 CDS CYYO01000008.1 198241 196949 -1 - 1293 Collagenase precursor (EC 3.4.-.-) - none -
fig|6666666.230098.peg.2943 CDS CYYO01000008.1 198311 199291 2 + 981 tRNA dihydrouridine synthase B (EC 1.-.-.-) tRNA modification Bacteria
fig|6666666.230098.peg.2944 CDS CYYO01000008.1 199637 199488 -2 - 150 hypothetical protein - none -
fig|6666666.230098.peg.2945 CDS CYYO01000008.1 199650 199775 3 + 126 hypothetical protein - none -
fig|6666666.230098.peg.2946 CDS CYYO01000008.1 200737 199772 -1 - 966 FIG00403590: hypothetical protein - none -
fig|6666666.230098.peg.2947 CDS CYYO01000008.1 201735 200728 -3 - 1008 NAD-dependent epimerase/dehydratase family protein CBSS-296591.1.peg.2330
fig|6666666.230098.peg.2948 CDS CYYO01000008.1 202819 201797 -1 - 1023 Cobalt-zinc-cadmium resistance protein Cobalt-zinc-cadmium resistance
fig|6666666.230098.peg.2949 CDS CYYO01000008.1 202962 205106 3 + 2145 3@1-to-5@1 exoribonuclease RNase R RNA processing and degradation, bacterial
fig|6666666.230098.peg.2950 CDS CYYO01000008.1 205449 205748 3 + 300 Pyridoxamine 5@1-phosphate oxidase (EC 1.4.3.5) Pyridoxin (Vitamin B6) Biosynthesis
fig|6666666.230098.peg.2951 CDS CYYO01000008.1 206759 205812 -2 - 948 Cysteine synthase (EC 2.5.1.47) Cysteine Biosynthesis;
Methionine Biosynthesis
fig|6666666.230098.peg.2952 CDS CYYO01000008.1 206979 207878 3 + 900 Serine acetyltransferase (EC 2.3.1.30) Cysteine Biosynthesis;
Methionine Biosynthesis
fig|6666666.230098.peg.2953 CDS CYYO01000008.1 208018 209517 1 + 1500 Methyltransferase (EC 2.1.1.-) - none -
fig|6666666.230098.peg.2954 CDS CYYO01000008.1 209526 211763 3 + 2238 Dipeptidyl peptidase IV - none -
fig|6666666.230098.peg.2955 CDS CYYO01000008.1 211938 213212 3 + 1275 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) De Novo Purine Biosynthesis
fig|6666666.230098.peg.2956 CDS CYYO01000008.1 213213 214208 3 + 996 FIG00936973: hypothetical protein - none -
fig|6666666.230098.peg.2957 CDS CYYO01000008.1 214193 214672 2 + 480 probable integral membrane protein Cj0341c - none -
fig|6666666.230098.peg.2958 CDS CYYO01000008.1 214835 215515 2 + 681 putative peptidase - none -
fig|6666666.230098.peg.2959 CDS CYYO01000008.1 215593 216495 1 + 903 Zinc ABC transporter, periplasmic-binding protein ZnuA - none -
fig|6666666.230098.peg.2960 CDS CYYO01000008.1 216530 217339 2 + 810 Zinc ABC transporter, ATP-binding protein ZnuC - none -
fig|6666666.230098.peg.2961 CDS CYYO01000008.1 219317 217422 -2 - 1896 FIG00402961: hypothetical protein - none -
fig|6666666.230098.peg.2962 CDS CYYO01000008.1 221829 219301 -3 - 2529 FIG00412616: hypothetical protein - none -
fig|6666666.230098.peg.2963 CDS CYYO01000008.1 223067 221835 -2 - 1233 N-acylglucosamine 2-epimerase (EC 5.1.3.8) Sialic Acid Metabolism
fig|6666666.230098.peg.2964 CDS CYYO01000008.1 224967 223282 -3 - 1686 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.230098.peg.2965 CDS CYYO01000008.1 228147 224986 -3 - 3162 Regulatory sensor-transducer, BlaR1/MecR1 family / TonB-dependent receptor Ton and Tol transport systems
fig|6666666.230098.peg.2966 CDS CYYO01000008.1 230746 228371 -1 - 2376 Alpha-xylosidase (EC 3.2.1.-) Xylose utilization
fig|6666666.230098.peg.2967 CDS CYYO01000008.1 231003 234914 3 + 3912 DNA-binding response regulator, AraC family - none -
fig|6666666.230098.peg.2968 CDS CYYO01000008.1 236650 234920 -1 - 1731 cellulase - none -
fig|6666666.230098.peg.2969 CDS CYYO01000008.1 238565 236691 -2 - 1875 FIG00416521: hypothetical protein - none -
fig|6666666.230098.peg.2970 CDS CYYO01000008.1 239842 238589 -1 - 1254 N-acylglucosamine 2-epimerase (EC 5.1.3.8) Sialic Acid Metabolism
fig|6666666.230098.peg.2971 CDS CYYO01000008.1 240182 242716 2 + 2535 FIG00412616: hypothetical protein - none -
fig|6666666.230098.peg.2972 CDS CYYO01000008.1 244280 242859 -2 - 1422 sialic acid-specific 9-O-acetylesterase - none -
fig|6666666.230098.peg.2973 CDS CYYO01000008.1 244474 245601 1 + 1128 hypothetical protein - none -
fig|6666666.230098.peg.2974 CDS CYYO01000008.1 246194 245739 -2 - 456 hypothetical protein - none -
fig|6666666.230098.peg.2975 CDS CYYO01000008.1 246437 246216 -2 - 222 hypothetical protein - none -
fig|6666666.230098.peg.2976 CDS CYYO01000008.1 247678 246848 -1 - 831 Abi-like protein - none -
fig|6666666.230098.peg.2977 CDS CYYO01000008.1 248154 249407 3 + 1254 hypothetical protein - none -
fig|6666666.230098.peg.2978 CDS CYYO01000008.1 249410 250474 2 + 1065 hypothetical protein - none -
fig|6666666.230098.peg.2979 CDS CYYO01000008.1 250477 254727 1 + 4251 ATP-dependent DNA helicase RecQ DNA repair, bacterial RecFOR pathway
fig|6666666.230098.peg.2980 CDS CYYO01000008.1 254733 255590 3 + 858 hypothetical protein - none -
fig|6666666.230098.peg.2981 CDS CYYO01000008.1 257037 255652 -3 - 1386 mobilization protein - none -
fig|6666666.230098.peg.2982 CDS CYYO01000008.1 258301 257426 -1 - 876 FIG00939054: hypothetical protein - none -
fig|6666666.230098.peg.2983 CDS CYYO01000008.1 258305 258418 2 + 114 hypothetical protein - none -
fig|6666666.230098.peg.2984 CDS CYYO01000008.1 259855 258686 -1 - 1170 FIG00937482: hypothetical protein - none -
fig|6666666.230098.peg.2985 CDS CYYO01000008.1 260235 259861 -3 - 375 Excisionase - none -
fig|6666666.230098.peg.2986 CDS CYYO01000008.1 261276 260446 -3 - 831 TnpC - none -
fig|6666666.230098.peg.2987 CDS CYYO01000008.1 262636 261518 -1 - 1119 Integrase - none -
fig|6666666.230098.peg.2988 CDS CYYO01000008.1 263712 262777 -3 - 936 putative transposase - none -
fig|6666666.230098.peg.2989 CDS CYYO01000008.1 266031 264061 -3 - 1971 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) Cellulosome
fig|6666666.230098.peg.2990 CDS CYYO01000008.1 268129 266858 -1 - 1272 ATPase component BioM of energizing module of biotin ECF transporter Biotin biosynthesis
fig|6666666.230098.peg.2991 CDS CYYO01000008.1 268549 271893 1 + 3345 membrane protein, putative - none -
fig|6666666.230098.peg.2992 CDS CYYO01000008.1 272072 272668 2 + 597 Polysaccharide deacetylase - none -
fig|6666666.230098.peg.2993 CDS CYYO01000008.1 272840 272703 -2 - 138 hypothetical protein - none -
fig|6666666.230098.peg.2994 CDS CYYO01000008.1 273693 272812 -3 - 882 FIG00414726: hypothetical protein - none -
fig|6666666.230098.peg.2995 CDS CYYO01000008.1 274030 275919 1 + 1890 sensor histidine kinase - none -
fig|6666666.230098.peg.2996 CDS CYYO01000008.1 275916 276548 3 + 633 DNA-binding response regulator, LuxR family - none -
fig|6666666.230098.peg.2997 CDS CYYO01000008.1 277859 276627 -2 - 1233 FIG00405395: hypothetical protein - none -
fig|6666666.230098.peg.2998 CDS CYYO01000008.1 277867 278031 1 + 165 hypothetical protein - none -
fig|6666666.230098.peg.2999 CDS CYYO01000008.1 278837 278034 -2 - 804 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) D-Galacturonate and D-Glucuronate Utilization
fig|6666666.230098.peg.3000 CDS CYYO01000008.1 279028 278876 -1 - 153 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) D-Galacturonate and D-Glucuronate Utilization
fig|6666666.230098.peg.3001 CDS CYYO01000008.1 280769 279477 -2 - 1293 Tyrosyl-tRNA synthetase (EC 6.1.1.1) tRNA aminoacylation, Tyr
fig|6666666.230098.peg.3002 CDS CYYO01000008.1 281356 280877 -1 - 480 Putative deoxyribonuclease YjjV Deoxyribose and Deoxynucleoside Catabolism;
YcfH
fig|6666666.230098.peg.3003 CDS CYYO01000008.1 281760 281539 -3 - 222 Protein YidD Cell Division Subsystem including YidCD;
RNA modification cluster
fig|6666666.230098.peg.3004 CDS CYYO01000008.1 282173 281757 -2 - 417 Ribonuclease P protein component (EC 3.1.26.5) Cell Division Subsystem including YidCD;
RNA modification cluster;
tRNA processing
fig|6666666.230098.peg.3005 CDS CYYO01000008.1 283111 282359 -1 - 753 uroporphyrinogen-III synthase HemD, putative - none -
fig|6666666.230098.peg.3006 CDS CYYO01000008.1 283847 283116 -2 - 732 FIG00938392: hypothetical protein - none -
fig|6666666.230098.peg.3007 CDS CYYO01000008.1 284581 283844 -1 - 738 Lysine decarboxylase family - none -
fig|6666666.230098.peg.3008 CDS CYYO01000008.1 285553 284732 -1 - 822 Mobile element protein - none -
fig|6666666.230098.peg.3009 CDS CYYO01000008.1 287521 286022 -1 - 1500 Mobile element protein - none -
fig|6666666.230098.peg.3010 CDS CYYO01000009.1 1202 39 -2 - 1164 Mobile element protein - none -
fig|6666666.230098.peg.3011 CDS CYYO01000009.1 2494 1403 -1 - 1092 tRNA-specific 2-thiouridylase MnmA RNA methylation
fig|6666666.230098.peg.3012 CDS CYYO01000009.1 2581 4056 1 + 1476 Cysteinyl-tRNA synthetase (EC 6.1.1.16) tRNA aminoacylation, Cys
fig|6666666.230098.peg.3013 CDS CYYO01000009.1 4238 4104 -2 - 135 hypothetical protein - none -
fig|6666666.230098.peg.3014 CDS CYYO01000009.1 6243 4213 -3 - 2031 putative patatin-like phospholipase - none -
fig|6666666.230098.peg.3015 CDS CYYO01000009.1 7912 6389 -1 - 1524 Choline-sulfatase (EC 3.1.6.6) - none -
fig|6666666.230098.peg.3016 CDS CYYO01000009.1 9129 7930 -3 - 1200 Glucuronyl hydrolase - none -
fig|6666666.230098.peg.3017 CDS CYYO01000009.1 9308 9751 2 + 444 Phenylacetic acid degradation protein PaaD, thioesterase - none -
fig|6666666.230098.peg.3018 CDS CYYO01000009.1 9804 10400 3 + 597 hypothetical protein - none -
fig|6666666.230098.peg.3019 CDS CYYO01000009.1 12480 10525 -3 - 1956 FIG00899092: hypothetical protein - none -
fig|6666666.230098.peg.3020 CDS CYYO01000009.1 12789 13964 3 + 1176 Membrane fusion protein of RND family multidrug efflux pump Multidrug Resistance Efflux Pumps
fig|6666666.230098.peg.3021 CDS CYYO01000009.1 14019 17438 3 + 3420 RND efflux system, inner membrane transporter CmeB Multidrug Resistance Efflux Pumps
fig|6666666.230098.peg.3022 CDS CYYO01000009.1 17458 18843 1 + 1386 RND efflux system, outer membrane lipoprotein CmeC Multidrug Resistance Efflux Pumps
fig|6666666.230098.peg.3023 CDS CYYO01000009.1 18943 19710 1 + 768 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase (EC 2.3.1.129) Llipid A biosynthesis cluster
fig|6666666.230098.peg.3024 CDS CYYO01000009.1 20987 20274 -2 - 714 FIG00406137: hypothetical protein - none -
fig|6666666.230098.peg.3025 CDS CYYO01000009.1 22081 20999 -1 - 1083 MdsC protein - none -
fig|6666666.230098.peg.3026 CDS CYYO01000009.1 22313 26344 2 + 4032 FIG00939280: hypothetical protein - none -
fig|6666666.230098.peg.3027 CDS CYYO01000009.1 26482 26354 -1 - 129 hypothetical protein - none -
fig|6666666.230098.peg.3028 CDS CYYO01000009.1 26474 28033 2 + 1560 Arylsulfatase (EC 3.1.6.1) Galactosylceramide and Sulfatide metabolism
fig|6666666.230098.peg.3029 CDS CYYO01000009.1 28205 31285 2 + 3081 TonB family protein / TonB-dependent receptor Ton and Tol transport systems
fig|6666666.230098.peg.3030 CDS CYYO01000009.1 31351 32802 1 + 1452 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.230098.peg.3031 CDS CYYO01000009.1 35853 33208 -3 - 2646 Beta-galactosidase (EC 3.2.1.23) Galactosylceramide and Sulfatide metabolism;
Lactose and Galactose Uptake and Utilization;
Lactose utilization
fig|6666666.230098.peg.3032 CDS CYYO01000009.1 38342 35862 -2 - 2481 chondroitinase AC precursor - none -
fig|6666666.230098.peg.3033 CDS CYYO01000009.1 38537 39670 2 + 1134 FIG01093326: hypothetical protein - none -
fig|6666666.230098.peg.3034 CDS CYYO01000009.1 39673 40641 1 + 969 Probable transcriptional regulator - none -
fig|6666666.230098.peg.3035 CDS CYYO01000009.1 43936 40850 -1 - 3087 Chondroitinase (chondroitin lyase) - none -
fig|6666666.230098.peg.3036 CDS CYYO01000009.1 44581 43943 -1 - 639 FIG00411032: hypothetical protein - none -
fig|6666666.230098.peg.3037 CDS CYYO01000009.1 45259 44747 -1 - 513 FIG00407889: hypothetical protein - none -
fig|6666666.230098.peg.3038 CDS CYYO01000009.1 46611 45337 -3 - 1275 FIG00937754: hypothetical protein - none -
fig|6666666.230098.peg.3039 CDS CYYO01000009.1 46708 47472 1 + 765 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch
fig|6666666.230098.peg.3040 CDS CYYO01000009.1 47479 48972 1 + 1494 Signal peptidase I (EC 3.4.21.89) Signal peptidase
fig|6666666.230098.peg.3041 CDS CYYO01000009.1 49008 49904 3 + 897 Signal peptidase I (EC 3.4.21.89) Signal peptidase
fig|6666666.230098.peg.3042 CDS CYYO01000009.1 49994 50635 2 + 642 FIG00649844: hypothetical protein - none -
fig|6666666.230098.peg.3043 CDS CYYO01000009.1 50639 51871 2 + 1233 Glucuronyl hydrolase - none -
fig|6666666.230098.peg.3044 CDS CYYO01000009.1 51994 52806 1 + 813 D-mannonate oxidoreductase (EC 1.1.1.57) D-Galacturonate and D-Glucuronate Utilization
fig|6666666.230098.peg.3045 CDS CYYO01000009.1 52841 54013 2 + 1173 Mannonate dehydratase (EC 4.2.1.8) D-Galacturonate and D-Glucuronate Utilization
fig|6666666.230098.peg.3046 CDS CYYO01000009.1 54801 54148 -3 - 654 Aquaporin Z Osmoregulation
fig|6666666.230098.peg.3047 CDS CYYO01000009.1 57297 55072 -3 - 2226 Beta-glucosidase (EC 3.2.1.21) - none -
fig|6666666.230098.peg.3048 CDS CYYO01000009.1 58908 57658 -3 - 1251 Endoglucanase C (EC 3.2.1.4) - none -
fig|6666666.230098.peg.3049 CDS CYYO01000009.1 60706 59114 -1 - 1593 Regulatory protein SusR Cellulosome
fig|6666666.230098.peg.3050 CDS CYYO01000009.1 60870 61997 3 + 1128 N-acetylglucosamine related transporter, NagX - none -
fig|6666666.230098.peg.3051 CDS CYYO01000009.1 61997 62584 2 + 588 FIG053235: Diacylglucosamine hydrolase like Llipid A biosynthesis cluster
fig|6666666.230098.peg.3052 CDS CYYO01000009.1 62647 63579 1 + 933 Alkaline phosphodiesterase I (EC 3.1.4.1) / Nucleotide pyrophosphatase (EC 3.6.1.9) Purine conversions
fig|6666666.230098.peg.3053 CDS CYYO01000009.1 64836 63589 -3 - 1248 FIG007959: peptidase, M16 family CBSS-1806.1.peg.3045;
CBSS-350688.3.peg.1509
fig|6666666.230098.peg.3054 CDS CYYO01000009.1 64960 65565 1 + 606 Arabinose 5-phosphate isomerase (EC 5.3.1.13) - none -
fig|6666666.230098.peg.3055 CDS CYYO01000009.1 65553 66482 3 + 930 Fructokinase (EC 2.7.1.4) Sucrose utilization
fig|6666666.230098.peg.3056 CDS CYYO01000009.1 66646 68028 1 + 1383 FIG00415543: hypothetical protein - none -
fig|6666666.230098.peg.3057 CDS CYYO01000009.1 68037 68639 3 + 603 hypothetical protein - none -
fig|6666666.230098.peg.3058 CDS CYYO01000009.1 68880 69293 3 + 414 hypothetical protein - none -
fig|6666666.230098.peg.3059 CDS CYYO01000009.1 69443 70507 2 + 1065 Possible protein-tyrosine-phosphatase (EC 3.1.3.48) - none -
fig|6666666.230098.peg.3060 CDS CYYO01000009.1 70652 72604 2 + 1953 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) - none -
fig|6666666.230098.peg.3061 CDS CYYO01000009.1 73182 72694 -3 - 489 Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1) Oxidative stress;
Oxidative stress;
Oxidative stress
fig|6666666.230098.peg.3062 CDS CYYO01000009.1 73314 74249 3 + 936 Hydrogen peroxide-inducible genes activator LysR-family proteins in Escherichia coli;
LysR-family proteins in Salmonella enterica Typhimurium;
Oxidative stress;
Thioredoxin-disulfide reductase
fig|6666666.230098.peg.3063 CDS CYYO01000009.1 74445 75011 3 + 567 Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) Thioredoxin-disulfide reductase
fig|6666666.230098.peg.3064 CDS CYYO01000009.1 75274 76806 1 + 1533 Alkyl hydroperoxide reductase protein F (EC 1.6.4.-) Thioredoxin-disulfide reductase
fig|6666666.230098.peg.3065 CDS CYYO01000009.1 78983 76845 -2 - 2139 FIG00936757: hypothetical protein - none -
fig|6666666.230098.peg.3066 CDS CYYO01000009.1 80370 79000 -3 - 1371 FIG00761799: membrane protein - none -
fig|6666666.230098.peg.3067 CDS CYYO01000009.1 81058 80387 -1 - 672 DNA-damage-inducible protein D - none -
fig|6666666.230098.peg.3068 CDS CYYO01000009.1 82720 81236 -1 - 1485 Polysaccharide biosynthesis protein - none -
fig|6666666.230098.peg.3069 CDS CYYO01000009.1 83969 82791 -2 - 1179 Holliday junction DNA helicase RuvB RuvABC plus a hypothetical
fig|6666666.230098.peg.3070 CDS CYYO01000009.1 85596 84070 -3 - 1527 FIG00411211: hypothetical protein - none -
fig|6666666.230098.peg.3071 CDS CYYO01000009.1 87203 85632 -2 - 1572 RagB/SusD domain protein - none -
fig|6666666.230098.peg.3072 CDS CYYO01000009.1 90166 87212 -1 - 2955 SusC, outer membrane protein involved in starch binding Cellulosome
fig|6666666.230098.peg.3073 CDS CYYO01000009.1 91223 90219 -2 - 1005 FIG00761799: membrane protein - none -
fig|6666666.230098.peg.3074 CDS CYYO01000009.1 92170 91235 -1 - 936 Ribokinase (EC 2.7.1.15) D-ribose utilization;
Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.230098.peg.3075 CDS CYYO01000009.1 93136 92210 -1 - 927 Ribokinase (EC 2.7.1.15) D-ribose utilization;
Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.230098.peg.3076 CDS CYYO01000009.1 94864 93353 -1 - 1512 FIG00413071: hypothetical protein - none -
fig|6666666.230098.peg.3077 CDS CYYO01000009.1 95821 95054 -1 - 768 probable DNA alkylation repair enzyme - none -
fig|6666666.230098.peg.3078 CDS CYYO01000009.1 95953 96957 1 + 1005 Aminopeptidase - none -
fig|6666666.230098.peg.3079 CDS CYYO01000009.1 96983 98215 2 + 1233 Spore maturation protein A-like protein Spore Core Dehydration
fig|6666666.230098.peg.3080 CDS CYYO01000009.1 98283 98696 3 + 414 Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly CBSS-56780.10.peg.1536;
Glycyl-tRNA synthetase containing cluster;
tRNA-methylthiotransferase containing cluster
fig|6666666.230098.peg.3081 CDS CYYO01000009.1 99304 98768 -1 - 537 FIG00405963: hypothetical protein - none -
fig|6666666.230098.peg.3082 CDS CYYO01000009.1 99828 99433 -3 - 396 FIG00405963: hypothetical protein - none -
fig|6666666.230098.peg.3083 CDS CYYO01000009.1 101403 99967 -3 - 1437 putative pyrogenic exotoxin B - none -
fig|6666666.230098.peg.3084 CDS CYYO01000009.1 102603 101467 -3 - 1137 Aldose 1-epimerase (EC 5.1.3.3) Lactose and Galactose Uptake and Utilization;
Maltose and Maltodextrin Utilization
fig|6666666.230098.peg.3085 CDS CYYO01000009.1 104663 102633 -2 - 2031 FIG00938305: hypothetical protein - none -
fig|6666666.230098.peg.3086 CDS CYYO01000009.1 107324 104697 -2 - 2628 Alfa-L-rhamnosidase (EC 3.2.1.40) - none -
fig|6666666.230098.peg.3087 CDS CYYO01000009.1 108454 107429 -1 - 1026 Arabinan endo-1,5-alpha-L-arabinosidase (EC 3.2.1.99) L-Arabinose utilization
fig|6666666.230098.peg.3088 CDS CYYO01000009.1 109432 108464 -1 - 969 endo-1,4-beta-xylanase - none -
fig|6666666.230098.peg.3089 CDS CYYO01000009.1 110404 109436 -1 - 969 Endo-1,4-beta-xylanase D - none -
fig|6666666.230098.peg.3090 CDS CYYO01000009.1 113291 110649 -2 - 2643 Endo-1,4-beta-xylanase D - none -
fig|6666666.230098.peg.3091 CDS CYYO01000009.1 114953 113376 -2 - 1578 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.230098.peg.3092 CDS CYYO01000009.1 117987 114976 -3 - 3012 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.230098.peg.3093 CDS CYYO01000009.1 122241 118288 -3 - 3954 DNA-binding response regulator, AraC family - none -
fig|6666666.230098.peg.3094 CDS CYYO01000009.1 124164 122347 -3 - 1818 Beta-galactosidase (EC 3.2.1.23) Galactosylceramide and Sulfatide metabolism;
Lactose and Galactose Uptake and Utilization;
Lactose utilization
fig|6666666.230098.peg.3095 CDS CYYO01000009.1 124433 124290 -2 - 144 hypothetical protein - none -
fig|6666666.230098.peg.3096 CDS CYYO01000009.1 125986 124496 -1 - 1491 FIG00408294: hypothetical protein - none -
fig|6666666.230098.peg.3097 CDS CYYO01000009.1 129149 126006 -2 - 3144 TonB family protein / TonB-dependent receptor Ton and Tol transport systems
fig|6666666.230098.peg.3098 CDS CYYO01000009.1 129463 131337 1 + 1875 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA Cell Division Subsystem including YidCD;
RNA modification and chromosome partitioning cluster;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.230098.peg.3099 CDS CYYO01000009.1 131394 131918 3 + 525 Adenine phosphoribosyltransferase (EC 2.4.2.7) Purine conversions;
cAMP signaling in bacteria
fig|6666666.230098.peg.3100 CDS CYYO01000009.1 132041 133861 2 + 1821 Excinuclease ABC subunit C DNA repair, UvrABC system
fig|6666666.230098.peg.3101 CDS CYYO01000009.1 133942 134394 1 + 453 D-tyrosyl-tRNA(Tyr) deacylase (EC 3.6.1.n1) - none -
fig|6666666.230098.peg.3102 CDS CYYO01000009.1 134394 134732 3 + 339 FIG00649439: hypothetical protein - none -
fig|6666666.230098.peg.3103 CDS CYYO01000009.1 134719 135621 1 + 903 Deoxyribose-phosphate aldolase (EC 4.1.2.4) Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.230098.peg.3104 CDS CYYO01000009.1 136681 135707 -1 - 975 Octaprenyl diphosphate synthase (EC 2.5.1.90) / Dimethylallyltransferase (EC 2.5.1.1) / (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10) / Geranylgeranyl diphosphate synthase (EC 2.5.1.29) Isoprenoid Biosynthesis;
Isoprenoid Biosynthesis;
Isoprenoid Biosynthesis: Interconversions;
Isoprenoinds for Quinones;
Isoprenoinds for Quinones;
Isoprenoinds for Quinones;
Isoprenoinds for Quinones;
Polyprenyl Diphosphate Biosynthesis;
Polyprenyl Diphosphate Biosynthesis;
Polyprenyl Diphosphate Biosynthesis
fig|6666666.230098.peg.3105 CDS CYYO01000009.1 136769 139624 2 + 2856 DNA polymerase I (EC 2.7.7.7) DNA Repair Base Excision
fig|6666666.230098.peg.3106 CDS CYYO01000009.1 139903 140295 1 + 393 FIG00405367: hypothetical protein - none -
fig|6666666.230098.peg.3107 CDS CYYO01000009.1 140429 141052 2 + 624 FIG00406942: hypothetical protein - none -
fig|6666666.230098.peg.3108 CDS CYYO01000009.1 142939 141323 -1 - 1617 Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8) D-Galacturonate and D-Glucuronate Utilization;
Xylose utilization
fig|6666666.230098.peg.3109 CDS CYYO01000009.1 143300 144382 2 + 1083 GTP-binding and nucleic acid-binding protein YchF Universal GTPases
fig|6666666.230098.peg.3110 CDS CYYO01000009.1 144457 145269 1 + 813 FIG00403719: hypothetical protein - none -
fig|6666666.230098.peg.3111 CDS CYYO01000009.1 145284 146204 3 + 921 2-dehydropantoate 2-reductase (EC 1.1.1.169) Coenzyme A Biosynthesis
fig|6666666.230098.peg.3112 CDS CYYO01000009.1 146291 147193 2 + 903 Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-) Lipoprotein Biosynthesis
fig|6666666.230098.peg.3113 CDS CYYO01000009.1 147366 147205 -3 - 162 hypothetical protein - none -
fig|6666666.230098.peg.3114 CDS CYYO01000009.1 147331 149631 1 + 2301 Alpha-xylosidase (EC 3.2.1.-) Xylose utilization
fig|6666666.230098.peg.3115 CDS CYYO01000009.1 149666 151843 2 + 2178 Beta-glucosidase (EC 3.2.1.21) - none -
fig|6666666.230098.peg.3116 CDS CYYO01000009.1 152156 152971 2 + 816 ABC1 family protein ## group 11 - none -
fig|6666666.230098.peg.3117 CDS CYYO01000009.1 153035 154645 2 + 1611 ABC1 family protein ## group 11 - none -
fig|6666666.230098.peg.3118 CDS CYYO01000009.1 156073 155342 -1 - 732 Prohibitin - none -
fig|6666666.230098.peg.3119 CDS CYYO01000009.1 157070 156576 -2 - 495 hypothetical protein - none -
fig|6666666.230098.peg.3120 CDS CYYO01000009.1 158050 157694 -1 - 357 FIG00418096: hypothetical protein - none -
fig|6666666.230098.peg.3121 CDS CYYO01000009.1 158250 159515 3 + 1266 FIG00413271: hypothetical protein - none -
fig|6666666.230098.peg.3122 CDS CYYO01000009.1 160585 159719 -1 - 867 FIG00418058: hypothetical protein - none -
fig|6666666.230098.peg.3123 CDS CYYO01000009.1 161448 160696 -3 - 753 Transcriptional regulatory protein rprY - none -
fig|6666666.230098.peg.3124 CDS CYYO01000009.1 161819 161691 -2 - 129 hypothetical protein - none -
fig|6666666.230098.peg.3125 CDS CYYO01000009.1 161818 162039 1 + 222 hypothetical protein - none -
fig|6666666.230098.peg.3126 CDS CYYO01000009.1 164267 162042 -2 - 2226 two-component system sensor histidine kinase - none -
fig|6666666.230098.peg.3127 CDS CYYO01000009.1 166488 164404 -3 - 2085 FIG00411497: hypothetical protein - none -
fig|6666666.230098.peg.3128 CDS CYYO01000009.1 169925 166500 -2 - 3426 Alpha-mannosidase (EC 3.2.1.24) Mannose Metabolism
fig|6666666.230098.peg.3129 CDS CYYO01000009.1 170111 169968 -2 - 144 Alpha-mannosidase (EC 3.2.1.24) Mannose Metabolism
fig|6666666.230098.peg.3130 CDS CYYO01000009.1 171330 170152 -3 - 1179 putative alpha-1,6-mannanase - none -
fig|6666666.230098.peg.3131 CDS CYYO01000009.1 172421 171348 -2 - 1074 carbohydrate-binding protein - none -
fig|6666666.230098.peg.3132 CDS CYYO01000009.1 174459 172516 -3 - 1944 FIG00939684: hypothetical protein - none -
fig|6666666.230098.peg.3133 CDS CYYO01000010.1 153 2384 3 + 2232 SusC, outer membrane protein involved in starch binding Cellulosome
fig|6666666.230098.peg.3134 CDS CYYO01000010.1 2402 3919 2 + 1518 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.230098.peg.3135 CDS CYYO01000010.1 4572 3979 -3 - 594 MarC family integral membrane protein - none -
fig|6666666.230098.peg.3136 CDS CYYO01000010.1 5395 4697 -1 - 699 Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5@1-phosphoribitylamino)uracil phosphatase Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants
fig|6666666.230098.peg.3137 CDS CYYO01000010.1 6361 5483 -1 - 879 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) ABC transporter alkylphosphonate (TC 3.A.1.9.1)
fig|6666666.230098.peg.3138 CDS CYYO01000010.1 7070 6396 -2 - 675 rRNA small subunit methyltransferase I 16S rRNA modification within P site of ribosome;
Heat shock dnaK gene cluster extended
fig|6666666.230098.peg.3139 CDS CYYO01000010.1 7614 7084 -3 - 531 FIG00405769: hypothetical protein - none -
fig|6666666.230098.peg.3140 CDS CYYO01000010.1 7779 8384 3 + 606 Thymidine kinase (EC 2.7.1.21) - none -
fig|6666666.230098.peg.3141 CDS CYYO01000010.1 8407 9522 1 + 1116 Transporter - none -
fig|6666666.230098.peg.3142 CDS CYYO01000010.1 9939 11153 3 + 1215 Tyrosine type site-specific recombinase - none -
fig|6666666.230098.peg.3143 CDS CYYO01000010.1 11379 12548 3 + 1170 FIG00898363: hypothetical protein - none -
fig|6666666.230098.peg.3144 CDS CYYO01000010.1 12615 13430 3 + 816 hypothetical protein - none -
fig|6666666.230098.peg.3145 CDS CYYO01000010.1 13488 14105 3 + 618 hypothetical protein - none -
fig|6666666.230098.peg.3146 CDS CYYO01000010.1 14121 14276 3 + 156 FIG00408054: hypothetical protein - none -
fig|6666666.230098.peg.3147 CDS CYYO01000010.1 14292 14636 3 + 345 hypothetical protein - none -
fig|6666666.230098.peg.3148 CDS CYYO01000010.1 14655 15632 3 + 978 hypothetical protein - none -
fig|6666666.230098.peg.3149 CDS CYYO01000010.1 15666 15959 3 + 294 FIG00898875: hypothetical protein - none -
fig|6666666.230098.peg.3150 CDS CYYO01000010.1 16069 16206 1 + 138 hypothetical protein - none -
fig|6666666.230098.peg.3151 CDS CYYO01000010.1 16259 17197 2 + 939 hypothetical protein - none -
fig|6666666.230098.peg.3152 CDS CYYO01000010.1 17194 17463 1 + 270 FIG00411855: hypothetical protein - none -
fig|6666666.230098.peg.3153 CDS CYYO01000010.1 17460 18272 3 + 813 FIG00896576: hypothetical protein - none -
fig|6666666.230098.peg.3154 CDS CYYO01000010.1 18294 19013 3 + 720 Type I restriction enzyme, M subunit - none -
fig|6666666.230098.peg.3155 CDS CYYO01000010.1 19039 19929 1 + 891 hypothetical protein - none -
fig|6666666.230098.peg.3156 CDS CYYO01000010.1 20046 20282 3 + 237 hypothetical protein - none -
fig|6666666.230098.peg.3157 CDS CYYO01000010.1 20325 20918 3 + 594 hypothetical protein - none -
fig|6666666.230098.peg.3158 CDS CYYO01000010.1 20930 22849 2 + 1920 hypothetical protein - none -
fig|6666666.230098.peg.3159 CDS CYYO01000010.1 22846 23610 1 + 765 FIG00897967: hypothetical protein - none -
fig|6666666.230098.peg.3160 CDS CYYO01000010.1 23667 24002 3 + 336 hypothetical protein - none -
fig|6666666.230098.peg.3161 CDS CYYO01000010.1 23986 24291 1 + 306 hypothetical protein - none -
fig|6666666.230098.peg.3162 CDS CYYO01000010.1 24291 24638 3 + 348 FIG00404010: hypothetical protein - none -
fig|6666666.230098.peg.3163 CDS CYYO01000010.1 25152 24682 -3 - 471 Lysozyme-related protein - none -
fig|6666666.230098.peg.3164 CDS CYYO01000010.1 25688 25185 -2 - 504 Conjugative transposon protein TraQ Conjugative transposon, Bacteroidales
fig|6666666.230098.peg.3165 CDS CYYO01000010.1 26545 25685 -1 - 861 DNA primase (EC 2.7.7.-) CBSS-349161.4.peg.2417;
Macromolecular synthesis operon
fig|6666666.230098.peg.3166 CDS CYYO01000010.1 27109 26552 -1 - 558 Conjugative transposon protein TraO Conjugative transposon, Bacteroidales
fig|6666666.230098.peg.3167 CDS CYYO01000010.1 28053 27106 -3 - 948 Conjugative transposon protein TraN Conjugative transposon, Bacteroidales
fig|6666666.230098.peg.3168 CDS CYYO01000010.1 29353 28067 -1 - 1287 Conjugative transposon protein TraM Conjugative transposon, Bacteroidales
fig|6666666.230098.peg.3169 CDS CYYO01000010.1 29477 29304 -2 - 174 hypothetical protein - none -
fig|6666666.230098.peg.3170 CDS CYYO01000010.1 30241 29618 -1 - 624 Conjugative transposon protein TraK Conjugative transposon, Bacteroidales
fig|6666666.230098.peg.3171 CDS CYYO01000010.1 31284 30271 -3 - 1014 Conjugative transposon protein TraJ Conjugative transposon, Bacteroidales
fig|6666666.230098.peg.3172 CDS CYYO01000010.1 31917 31288 -3 - 630 Conjugative transposon protein TraI Conjugative transposon, Bacteroidales
fig|6666666.230098.peg.3173 CDS CYYO01000010.1 32273 31914 -2 - 360 Conjugative transposon protein TraH Conjugative transposon, Bacteroidales
fig|6666666.230098.peg.3174 CDS CYYO01000010.1 32933 32319 -2 - 615 hypothetical protein - none -
fig|6666666.230098.peg.3175 CDS CYYO01000010.1 35458 32939 -1 - 2520 Conjugative transposon protein TraG Conjugative transposon, Bacteroidales
fig|6666666.230098.peg.3176 CDS CYYO01000010.1 35778 35455 -3 - 324 Conjugative transposon protein TraF Conjugative transposon, Bacteroidales
fig|6666666.230098.peg.3177 CDS CYYO01000010.1 36078 35782 -3 - 297 Conjugative transposon protein TraE Conjugative transposon, Bacteroidales
fig|6666666.230098.peg.3178 CDS CYYO01000010.1 36922 36263 -1 - 660 Conjugative transposon protein TraD Conjugative transposon, Bacteroidales
fig|6666666.230098.peg.3179 CDS CYYO01000010.1 37281 36910 -3 - 372 Conjugative transposon protein TraB Conjugative transposon, Bacteroidales
fig|6666666.230098.peg.3180 CDS CYYO01000010.1 37724 37287 -2 - 438 Conjugative transposon protein TraB Conjugative transposon, Bacteroidales
fig|6666666.230098.peg.3181 CDS CYYO01000010.1 38482 37730 -1 - 753 Conjugative transposon protein TraA Conjugative transposon, Bacteroidales
fig|6666666.230098.peg.3182 CDS CYYO01000010.1 39177 38929 -3 - 249 hypothetical protein - none -
fig|6666666.230098.peg.3183 CDS CYYO01000010.1 39184 39606 1 + 423 hypothetical protein clusted with conjugative transposons, BF0131 Conjugative transposon, Bacteroidales
fig|6666666.230098.peg.3184 CDS CYYO01000010.1 39591 40853 3 + 1263 Putative conjugative transposon mobilization protein BF0132 Conjugative transposon, Bacteroidales
fig|6666666.230098.peg.3185 CDS CYYO01000010.1 40916 42952 2 + 2037 Putative mobilization protein BF0133 Conjugative transposon, Bacteroidales
fig|6666666.230098.peg.3186 CDS CYYO01000010.1 43773 43618 -3 - 156 hypothetical protein - none -
fig|6666666.230098.peg.3187 CDS CYYO01000010.1 43840 44133 1 + 294 hypothetical protein - none -
fig|6666666.230098.peg.3188 CDS CYYO01000010.1 44136 44321 3 + 186 hypothetical protein - none -
fig|6666666.230098.peg.3189 CDS CYYO01000010.1 44327 44659 2 + 333 hypothetical protein - none -
fig|6666666.230098.peg.3190 CDS CYYO01000010.1 44735 44974 2 + 240 hypothetical protein - none -
fig|6666666.230098.peg.3191 CDS CYYO01000010.1 45518 45393 -2 - 126 hypothetical protein - none -
fig|6666666.230098.peg.3192 CDS CYYO01000010.1 45836 45985 2 + 150 hypothetical protein - none -
fig|6666666.230098.peg.3193 CDS CYYO01000010.1 46004 46387 2 + 384 putative single strand binding protein - none -
fig|6666666.230098.peg.3194 CDS CYYO01000010.1 46701 47057 3 + 357 FIG00410669: hypothetical protein - none -
fig|6666666.230098.peg.3195 CDS CYYO01000010.1 47182 47367 1 + 186 hypothetical protein - none -
fig|6666666.230098.peg.3196 CDS CYYO01000010.1 47514 47627 3 + 114 hypothetical protein - none -
fig|6666666.230098.peg.3197 CDS CYYO01000010.1 48371 47724 -2 - 648 serine type site-specific recombinase - none -
fig|6666666.230098.peg.3198 CDS CYYO01000010.1 48622 49617 1 + 996 FIG00896953: hypothetical protein - none -
fig|6666666.230098.peg.3199 CDS CYYO01000010.1 49663 50082 1 + 420 FIG00404129: hypothetical protein - none -
fig|6666666.230098.peg.3200 CDS CYYO01000010.1 50375 50497 2 + 123 hypothetical protein - none -
fig|6666666.230098.peg.3201 CDS CYYO01000010.1 50488 51066 1 + 579 FIG00899205: hypothetical protein - none -
fig|6666666.230098.peg.3202 CDS CYYO01000010.1 51068 51913 2 + 846 hypothetical protein - none -
fig|6666666.230098.peg.3203 CDS CYYO01000010.1 52259 53656 2 + 1398 archaeal ATPase, fused to C-terminal DUF234 domain - none -
fig|6666666.230098.peg.3204 CDS CYYO01000010.1 53770 54531 1 + 762 Chromosome (plasmid) partitioning protein ParA Bacterial Cell Division;
Bacterial Cytoskeleton;
Cell Division Subsystem including YidCD;
RNA modification and chromosome partitioning cluster
fig|6666666.230098.peg.3205 CDS CYYO01000010.1 54535 54786 1 + 252 FIG00403362: hypothetical protein - none -
fig|6666666.230098.peg.3206 CDS CYYO01000010.1 54871 55620 1 + 750 hypothetical protein - none -
fig|6666666.230098.peg.3207 CDS CYYO01000010.1 55753 56055 1 + 303 Arsenical resistance operon repressor - none -
fig|6666666.230098.peg.3208 CDS CYYO01000010.1 56118 57461 3 + 1344 Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps Multidrug Resistance Efflux Pumps;
Riboflavin, FMN and FAD metabolism in plants
fig|6666666.230098.peg.3209 CDS CYYO01000010.1 57458 59752 2 + 2295 Glutathione biosynthesis bifunctional protein gshF (EC 6.3.2.2)(EC 6.3.2.3) Glutathione: Biosynthesis and gamma-glutamyl cycle
fig|6666666.230098.peg.3210 CDS CYYO01000010.1 59844 60728 3 + 885 Serine acetyltransferase (EC 2.3.1.30) Cysteine Biosynthesis;
Methionine Biosynthesis
fig|6666666.230098.peg.3211 CDS CYYO01000010.1 60739 61173 1 + 435 Cysteine synthase (EC 2.5.1.47) Cysteine Biosynthesis;
Methionine Biosynthesis
fig|6666666.230098.peg.3212 CDS CYYO01000010.1 61991 61209 -2 - 783 Mobile element protein - none -
fig|6666666.230098.peg.3213 CDS CYYO01000010.1 63558 61978 -3 - 1581 Mobile element protein - none -
fig|6666666.230098.peg.3214 CDS CYYO01000010.1 64121 63675 -2 - 447 Tyrosine type site-specific recombinase - none -
fig|6666666.230098.peg.3215 CDS CYYO01000010.1 67221 65053 -3 - 2169 Alpha-1,2-mannosidase Mannose Metabolism
fig|6666666.230098.peg.3216 CDS CYYO01000010.1 68017 67313 -1 - 705 hypothetical protein - none -
fig|6666666.230098.peg.3217 CDS CYYO01000010.1 68126 68010 -2 - 117 hypothetical protein - none -
fig|6666666.230098.peg.3218 CDS CYYO01000010.1 69342 68116 -3 - 1227 FIG00937589: hypothetical protein - none -
fig|6666666.230098.peg.3219 CDS CYYO01000010.1 70252 69560 -1 - 693 hypothetical protein - none -
fig|6666666.230098.peg.3220 CDS CYYO01000010.1 72161 70269 -2 - 1893 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.230098.peg.3221 CDS CYYO01000010.1 75511 72182 -1 - 3330 TonB family protein / TonB-dependent receptor Ton and Tol transport systems
fig|6666666.230098.peg.3222 CDS CYYO01000010.1 76723 75701 -1 - 1023 putative anti-sigma factor - none -
fig|6666666.230098.peg.3223 CDS CYYO01000010.1 77141 76725 -2 - 417 RNA polymerase ECF-type sigma factor - none -
fig|6666666.230098.peg.3224 CDS CYYO01000010.1 78011 77343 -2 - 669 putative acylhydrolase - none -
fig|6666666.230098.peg.3225 CDS CYYO01000010.1 78802 79650 1 + 849 hypothetical protein - none -
fig|6666666.230098.peg.3226 CDS CYYO01000010.1 79656 80564 3 + 909 hypothetical protein - none -
fig|6666666.230098.peg.3227 CDS CYYO01000010.1 80592 81263 3 + 672 hypothetical protein - none -
fig|6666666.230098.peg.3228 CDS CYYO01000010.1 83102 82101 -2 - 1002 hypothetical protein - none -
fig|6666666.230098.peg.3229 CDS CYYO01000010.1 83454 83290 -3 - 165 hypothetical protein - none -
fig|6666666.230098.peg.3230 CDS CYYO01000010.1 84335 85114 2 + 780 DnaJ-like protein DjlA - none -
fig|6666666.230098.peg.3231 CDS CYYO01000010.1 85191 88463 3 + 3273 putative Tricorn-like protease - none -
fig|6666666.230098.peg.3232 CDS CYYO01000010.1 88644 90242 3 + 1599 Predicted cobalt transporter in Bacteroides_Porphyromonas Coenzyme B12 biosynthesis
fig|6666666.230098.peg.3233 CDS CYYO01000010.1 90246 91253 3 + 1008 Para-aminobenzoate synthase, aminase component (EC 2.6.1.85) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Folate Biosynthesis;
Tryptophan synthesis
fig|6666666.230098.peg.3234 CDS CYYO01000010.1 91237 91848 1 + 612 Aminodeoxychorismate lyase (EC 4.1.3.38) Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.;
Folate Biosynthesis;
Tryptophan synthesis
fig|6666666.230098.peg.3235 CDS CYYO01000010.1 92243 91854 -2 - 390 FIG00413250: hypothetical protein - none -
fig|6666666.230098.peg.3236 CDS CYYO01000010.1 92421 93737 3 + 1317 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.230098.peg.3237 CDS CYYO01000010.1 93992 94420 2 + 429 FIG00935916: hypothetical protein - none -
fig|6666666.230098.peg.3238 CDS CYYO01000010.1 94471 95283 1 + 813 Zinc ABC transporter, inner membrane permease protein ZnuB - none -
fig|6666666.230098.peg.3239 CDS CYYO01000010.1 95297 95722 2 + 426 TsaE protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA YjeE
fig|6666666.230098.peg.3240 CDS CYYO01000010.1 95772 95990 3 + 219 FIG00406966: hypothetical protein - none -
fig|6666666.230098.peg.3241 CDS CYYO01000010.1 96384 96052 -3 - 333 FIG00403617: hypothetical protein - none -
fig|6666666.230098.peg.3242 CDS CYYO01000010.1 96810 96496 -3 - 315 Thioredoxin - none -
fig|6666666.230098.peg.3243 CDS CYYO01000010.1 100774 96977 -1 - 3798 DNA polymerase III alpha subunit (EC 2.7.7.7) CBSS-350688.3.peg.1509;
Inteins;
Phage replication
fig|6666666.230098.peg.3244 CDS CYYO01000010.1 100945 101631 1 + 687 Phosphatidylserine decarboxylase (EC 4.1.1.65) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.230098.peg.3245 CDS CYYO01000010.1 101645 102352 2 + 708 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.230098.peg.3246 CDS CYYO01000010.1 102420 102719 3 + 300 FIG00405557: hypothetical protein - none -
fig|6666666.230098.peg.3247 CDS CYYO01000010.1 103184 102744 -2 - 441 tRNA-specific adenosine-34 deaminase (EC 3.5.4.-) tRNA modification Bacteria;
tRNA processing
fig|6666666.230098.peg.3248 CDS CYYO01000010.1 103437 103204 -3 - 234 FIG00406074: hypothetical protein - none -
fig|6666666.230098.peg.3249 CDS CYYO01000010.1 103934 103725 -2 - 210 hypothetical protein - none -
fig|6666666.230098.peg.3250 CDS CYYO01000010.1 104011 105420 1 + 1410 Carboxyl-terminal protease - none -
fig|6666666.230098.peg.3251 CDS CYYO01000010.1 105420 105785 3 + 366 Endonuclease (EC 3.1.-.-) - none -
fig|6666666.230098.peg.3252 CDS CYYO01000010.1 105855 106211 3 + 357 FIG00898592: hypothetical protein - none -
fig|6666666.230098.peg.3253 CDS CYYO01000010.1 106195 106968 1 + 774 Biotin--protein ligase (EC 6.3.4.9, EC 6.3.4.10, EC 6.3.4.11, EC 6.3.4.15) - none -
fig|6666666.230098.peg.3254 CDS CYYO01000010.1 109537 107090 -1 - 2448 Beta-galactosidase (EC 3.2.1.23) Galactosylceramide and Sulfatide metabolism;
Lactose and Galactose Uptake and Utilization;
Lactose utilization
fig|6666666.230098.peg.3255 CDS CYYO01000010.1 111175 109568 -1 - 1608 putative xylanase - none -
fig|6666666.230098.peg.3256 CDS CYYO01000010.1 112956 111295 -3 - 1662 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.230098.peg.3257 CDS CYYO01000010.1 116020 112970 -1 - 3051 SusC, outer membrane protein involved in starch binding Cellulosome
fig|6666666.230098.peg.3258 CDS CYYO01000010.1 117716 116043 -2 - 1674 FIG00405830: hypothetical protein - none -
fig|6666666.230098.peg.3259 CDS CYYO01000010.1 117767 121822 2 + 4056 DNA-binding response regulator, AraC family - none -
fig|6666666.230098.peg.3260 CDS CYYO01000010.1 122528 121863 -2 - 666 TPR-domain containing protein - none -
fig|6666666.230098.peg.3261 CDS CYYO01000010.1 122687 124054 2 + 1368 DNA-damage-inducible protein F - none -
fig|6666666.230098.peg.3262 CDS CYYO01000010.1 124324 126846 1 + 2523 Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4) Copper Transport System;
Copper homeostasis
fig|6666666.230098.peg.3263 CDS CYYO01000010.1 126935 127873 2 + 939 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.230098.peg.3264 CDS CYYO01000010.1 127896 128411 3 + 516 FIG00897869: hypothetical protein - none -
fig|6666666.230098.peg.3265 CDS CYYO01000010.1 128462 129205 2 + 744 Uridine monophosphate kinase (EC 2.7.4.22) CBSS-312309.3.peg.1965;
Ribosome recycling related cluster
fig|6666666.230098.peg.3266 CDS CYYO01000010.1 129367 129879 1 + 513 Ribosome recycling factor Ribosome recycling related cluster;
Translation termination factors bacterial
fig|6666666.230098.peg.3267 CDS CYYO01000010.1 130025 130918 2 + 894 Ribosome small subunit-stimulated GTPase EngC Universal GTPases
fig|6666666.230098.peg.3268 CDS CYYO01000010.1 131040 132122 3 + 1083 Probable Co/Zn/Cd efflux system membrane fusion protein Cobalt-zinc-cadmium resistance
fig|6666666.230098.peg.3269 CDS CYYO01000010.1 132163 135195 1 + 3033 RND multidrug efflux transporter; Acriflavin resistance protein Multidrug Resistance Efflux Pumps
fig|6666666.230098.peg.3270 CDS CYYO01000010.1 135192 136517 3 + 1326 Agglutination protein - none -
fig|6666666.230098.peg.3271 CDS CYYO01000010.1 136566 138206 3 + 1641 Amino acid permease - none -
fig|6666666.230098.peg.3272 CDS CYYO01000010.1 139411 138254 -1 - 1158 Integral membrane protein - none -
fig|6666666.230098.peg.3273 CDS CYYO01000010.1 141423 139783 -3 - 1641 Fumarate hydratase class I, anaerobic (EC 4.2.1.2) Serine-glyoxylate cycle
fig|6666666.230098.peg.3274 CDS CYYO01000010.1 143548 141557 -1 - 1992 FIG00898950: hypothetical protein - none -
fig|6666666.230098.peg.3275 CDS CYYO01000010.1 144913 143657 -1 - 1257 GTP-binding protein HflX Hfl operon;
Universal GTPases
fig|6666666.230098.peg.3276 CDS CYYO01000010.1 145877 145101 -2 - 777 FIG00405392: hypothetical protein - none -
fig|6666666.230098.peg.3277 CDS CYYO01000010.1 147543 145909 -3 - 1635 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.230098.peg.3278 CDS CYYO01000010.1 150538 147563 -1 - 2976 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.230098.peg.3279 CDS CYYO01000010.1 151229 152419 2 + 1191 Integrase - none -
fig|6666666.230098.peg.3280 CDS CYYO01000010.1 152759 152887 2 + 129 hypothetical protein - none -
fig|6666666.230098.peg.3281 CDS CYYO01000010.1 153345 156245 3 + 2901 TonB family protein / TonB-dependent receptor Ton and Tol transport systems
fig|6666666.230098.peg.3282 CDS CYYO01000010.1 156310 157866 1 + 1557 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.230098.peg.3283 CDS CYYO01000010.1 157897 158850 1 + 954 hypothetical protein - none -
fig|6666666.230098.peg.3284 CDS CYYO01000010.1 160172 158946 -2 - 1227 ATPase component BioM of energizing module of biotin ECF transporter Biotin biosynthesis
fig|6666666.230098.peg.3285 CDS CYYO01000010.1 161175 163550 3 + 2376 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.230098.peg.3286 CDS CYYO01000010.1 163569 165029 3 + 1461 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.230098.peg.3287 CDS CYYO01000010.1 165306 165178 -3 - 129 hypothetical protein - none -
fig|6666666.230098.peg.3288 CDS CYYO01000010.1 165664 165263 -1 - 402 ATPase - none -
fig|6666666.230098.peg.3289 CDS CYYO01000010.1 166159 166749 1 + 591 FIG00405000: hypothetical protein - none -
fig|6666666.230098.peg.3290 CDS CYYO01000010.1 166736 166927 2 + 192 hypothetical protein - none -
fig|6666666.230098.peg.3291 CDS CYYO01000010.1 167673 170549 3 + 2877 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.230098.peg.3292 CDS CYYO01000010.1 170570 172168 2 + 1599 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.230098.peg.3293 CDS CYYO01000010.1 172570 172397 -1 - 174 archaeal ATPase, fused to C-terminal DUF234 domain - none -
fig|6666666.230098.peg.3294 CDS CYYO01000011.1 780 16 -3 - 765 Integrase - none -
fig|6666666.230098.peg.3295 CDS CYYO01000011.1 1629 1135 -3 - 495 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78) Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin synthesis cluster
fig|6666666.230098.peg.3296 CDS CYYO01000011.1 2463 1780 -3 - 684 FIG170660: TPR domain protein CBSS-226186.1.peg.4253
fig|6666666.230098.peg.3297 CDS CYYO01000011.1 2690 2571 -2 - 120 hypothetical protein - none -
fig|6666666.230098.peg.3298 CDS CYYO01000011.1 2701 3813 1 + 1113 DNA recombination and repair protein RecF CBSS-226186.1.peg.4253;
Cell Division Subsystem including YidCD;
DNA repair, bacterial RecFOR pathway;
DNA replication cluster 1
fig|6666666.230098.peg.3299 CDS CYYO01000011.1 3810 4100 3 + 291 Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives DNA replication cluster 1
fig|6666666.230098.peg.3300 CDS CYYO01000011.1 4878 4093 -3 - 786 Histidinol-phosphatase (EC 3.1.3.15) Histidine Biosynthesis
fig|6666666.230098.peg.3301 CDS CYYO01000011.1 5369 4875 -2 - 495 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) 5-FCL-like protein;
Folate Biosynthesis;
One-carbon metabolism by tetrahydropterines;
Serine-glyoxylate cycle
fig|6666666.230098.peg.3302 CDS CYYO01000011.1 7062 5323 -3 - 1740 Carboxy-terminal processing protease - none -
fig|6666666.230098.peg.3303 CDS CYYO01000011.1 7578 7120 -3 - 459 dCMP deaminase (EC 3.5.4.12) - none -
fig|6666666.230098.peg.3304 CDS CYYO01000011.1 8085 7591 -3 - 495 FIG00405147: hypothetical protein - none -
fig|6666666.230098.peg.3305 CDS CYYO01000011.1 10205 8112 -2 - 2094 Dipeptidyl carboxypeptidase Dcp (EC 3.4.15.5) Protein degradation
fig|6666666.230098.peg.3306 CDS CYYO01000011.1 11320 10310 -1 - 1011 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis;
Pyridoxin (Vitamin B6) Biosynthesis;
Redox-dependent regulation of nucleus processes
fig|6666666.230098.peg.3307 CDS CYYO01000011.1 11461 11895 1 + 435 Large-conductance mechanosensitive channel Potassium homeostasis
fig|6666666.230098.peg.3308 CDS CYYO01000011.1 12328 13881 1 + 1554 GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2) Purine conversions
fig|6666666.230098.peg.3309 CDS CYYO01000011.1 13921 15228 1 + 1308 GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2) Purine conversions
fig|6666666.230098.peg.3310 CDS CYYO01000011.1 15325 15996 1 + 672 Lipolytic enzyme, G-D-S-L precursor - none -
fig|6666666.230098.peg.3311 CDS CYYO01000011.1 16679 16017 -2 - 663 Hcp transcriptional regulator HcpR (Crp/Fnr family) Nitrosative stress
fig|6666666.230098.peg.3312 CDS CYYO01000011.1 17470 16781 -1 - 690 PROBABLE INTEGRAL MEMBRANE PROTEIN - none -
fig|6666666.230098.peg.3313 CDS CYYO01000011.1 17820 17650 -3 - 171 FIG00417011: hypothetical protein - none -
fig|6666666.230098.peg.3314 CDS CYYO01000011.1 17821 19581 1 + 1761 Putative glycogen debranching enzyme, archaeal type, TIGR01561 Glycogen metabolism
fig|6666666.230098.peg.3315 CDS CYYO01000011.1 19608 20864 3 + 1257 Glycosyltransferase (EC 2.4.1.-) - none -
fig|6666666.230098.peg.3316 CDS CYYO01000011.1 20882 22297 2 + 1416 Alpha-amylase (EC 3.2.1.1) Maltose and Maltodextrin Utilization;
Trehalose Biosynthesis
fig|6666666.230098.peg.3317 CDS CYYO01000011.1 23961 22378 -3 - 1584 FIG00898509: hypothetical protein - none -
fig|6666666.230098.peg.3318 CDS CYYO01000011.1 24809 23985 -2 - 825 Similar to glycogen synthase (EC 2.4.1.21) - none -
fig|6666666.230098.peg.3319 CDS CYYO01000011.1 25056 25913 3 + 858 Pantoate--beta-alanine ligase (EC 6.3.2.1) Coenzyme A Biosynthesis;
Coenzyme A Biosynthesis cluster;
Folate biosynthesis cluster
fig|6666666.230098.peg.3320 CDS CYYO01000011.1 25949 26299 2 + 351 Aspartate 1-decarboxylase (EC 4.1.1.11) Coenzyme A Biosynthesis;
Coenzyme A Biosynthesis cluster;
Folate biosynthesis cluster
fig|6666666.230098.peg.3321 CDS CYYO01000011.1 28010 26364 -2 - 1647 FIG00407931: hypothetical protein - none -
fig|6666666.230098.peg.3322 CDS CYYO01000011.1 30424 28118 -1 - 2307 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) Ammonia assimilation;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.230098.peg.3323 CDS CYYO01000011.1 30621 32756 3 + 2136 TonB-dependent receptor, putative - none -
fig|6666666.230098.peg.3324 CDS CYYO01000011.1 32762 33775 2 + 1014 putative two-component system sensor protein, no kinase domain - none -
fig|6666666.230098.peg.3325 CDS CYYO01000011.1 33777 34478 3 + 702 two-component system response regulator protein - none -
fig|6666666.230098.peg.3326 CDS CYYO01000011.1 35900 34626 -2 - 1275 Seryl-tRNA synthetase (EC 6.1.1.11) Glycine and Serine Utilization;
tRNA aminoacylation, Ser
fig|6666666.230098.peg.3327 CDS CYYO01000011.1 36155 36042 -2 - 114 LSU ribosomal protein L27p CBSS-176279.3.peg.868
fig|6666666.230098.peg.3328 CDS CYYO01000011.1 36651 36334 -3 - 318 LSU ribosomal protein L21p CBSS-176279.3.peg.868
fig|6666666.230098.peg.3329 CDS CYYO01000011.1 38890 36878 -1 - 2013 Phosphoglycolate phosphatase (EC 3.1.3.18) 2-phosphoglycolate salvage;
Glycolate, glyoxylate interconversions
fig|6666666.230098.peg.3330 CDS CYYO01000011.1 39064 41295 1 + 2232 Alpha-1,2-mannosidase Mannose Metabolism
fig|6666666.230098.peg.3331 CDS CYYO01000011.1 41307 41900 3 + 594 RNA polymerase ECF-type sigma factor - none -
fig|6666666.230098.peg.3332 CDS CYYO01000011.1 41900 42901 2 + 1002 Putative anti-sigma factor - none -
fig|6666666.230098.peg.3333 CDS CYYO01000011.1 42985 45243 1 + 2259 Alpha-1,2-mannosidase Mannose Metabolism
fig|6666666.230098.peg.3334 CDS CYYO01000011.1 45547 48933 1 + 3387 SusC, outer membrane protein involved in starch binding Cellulosome
fig|6666666.230098.peg.3335 CDS CYYO01000011.1 48945 50534 3 + 1590 FIG00937161: hypothetical protein - none -
fig|6666666.230098.peg.3336 CDS CYYO01000011.1 50557 51570 1 + 1014 Endo-beta-N-acetylglucosaminidase F2 - none -
fig|6666666.230098.peg.3337 CDS CYYO01000011.1 51580 52734 1 + 1155 Patatin-like protein - none -
fig|6666666.230098.peg.3338 CDS CYYO01000011.1 52767 54755 3 + 1989 endo-beta-N-acetylglucosaminidase - none -
fig|6666666.230098.peg.3339 CDS CYYO01000011.1 54922 57192 1 + 2271 Alpha-1,2-mannosidase Mannose Metabolism
fig|6666666.230098.peg.3340 CDS CYYO01000011.1 57214 58524 1 + 1311 AmpG protein, beta-lactamase induction signal transducer - none -
fig|6666666.230098.peg.3341 CDS CYYO01000011.1 58548 59519 3 + 972 COG2152 predicted glycoside hydrolase - none -
fig|6666666.230098.peg.3342 CDS CYYO01000011.1 59815 62058 1 + 2244 Alpha-1,2-mannosidase Mannose Metabolism
fig|6666666.230098.peg.3343 CDS CYYO01000011.1 63663 62137 -3 - 1527 Two-component system sensor histidine kinase - none -
fig|6666666.230098.peg.3344 CDS CYYO01000011.1 64986 64102 -3 - 885 FIG00404457: hypothetical protein - none -
fig|6666666.230098.peg.3345 CDS CYYO01000011.1 65576 65064 -2 - 513 Lipoprotein spr precursor - none -
fig|6666666.230098.peg.3346 CDS CYYO01000011.1 66376 65573 -1 - 804 ATP-binding protein - none -
fig|6666666.230098.peg.3347 CDS CYYO01000011.1 67889 66402 -2 - 1488 FIG00406426: hypothetical protein - none -
fig|6666666.230098.peg.3348 CDS CYYO01000011.1 70801 67973 -1 - 2829 Probable zinc protease pqqL (EC 3.4.99.-) - none -
fig|6666666.230098.peg.3349 CDS CYYO01000011.1 71705 70905 -2 - 801 2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase (EC 2.5.1.55) A Gammaproteobacteria Cluster Relating to Translation
fig|6666666.230098.peg.3350 CDS CYYO01000011.1 72655 71729 -1 - 927 Transcription regulator [contains diacylglycerol kinase catalytic domain] - none -
fig|6666666.230098.peg.3351 CDS CYYO01000011.1 73639 72722 -1 - 918 tRNA dimethylallyltransferase (EC 2.5.1.75) tRNA modification Bacteria;
tRNA processing
fig|6666666.230098.peg.3352 CDS CYYO01000011.1 74279 74139 -2 - 141 hypothetical protein - none -
fig|6666666.230098.peg.3353 CDS CYYO01000011.1 74312 75559 2 + 1248 BexA - none -
fig|6666666.230098.peg.3354 CDS CYYO01000011.1 75574 76194 1 + 621 Chloramphenicol acetyltransferase (EC 2.3.1.28) - none -
fig|6666666.230098.peg.3355 CDS CYYO01000011.1 78265 76205 -1 - 2061 FIG00403395: hypothetical protein - none -
fig|6666666.230098.peg.3356 CDS CYYO01000011.1 78393 78977 3 + 585 FIG00407655: hypothetical protein - none -
fig|6666666.230098.peg.3357 CDS CYYO01000011.1 79744 78980 -1 - 765 transcriptional regulator - none -
fig|6666666.230098.peg.3358 CDS CYYO01000011.1 80621 80502 -2 - 120 hypothetical protein - none -
fig|6666666.230098.peg.3359 CDS CYYO01000011.1 81581 80706 -2 - 876 Abortive infection protein AbiGII - none -
fig|6666666.230098.peg.3360 CDS CYYO01000011.1 82080 81586 -3 - 495 hypothetical protein - none -
fig|6666666.230098.peg.3361 CDS CYYO01000011.1 82414 83301 1 + 888 DNA primase (EC 2.7.7.-) CBSS-349161.4.peg.2417;
Macromolecular synthesis operon
fig|6666666.230098.peg.3362 CDS CYYO01000011.1 84152 83373 -2 - 780 hypothetical protein - none -
fig|6666666.230098.peg.3363 CDS CYYO01000011.1 84839 84537 -2 - 303 hypothetical protein - none -
fig|6666666.230098.peg.3364 CDS CYYO01000011.1 85140 84847 -3 - 294 hypothetical protein - none -
fig|6666666.230098.peg.3365 CDS CYYO01000011.1 85602 85895 3 + 294 hypothetical protein - none -
fig|6666666.230098.peg.3366 CDS CYYO01000011.1 85952 86656 2 + 705 Maebl - none -
fig|6666666.230098.peg.3367 CDS CYYO01000011.1 87531 86740 -3 - 792 ThiF family protein, ubiquitin-activating enzyme - none -
fig|6666666.230098.peg.3368 CDS CYYO01000011.1 88238 87528 -2 - 711 hypothetical protein - none -
fig|6666666.230098.peg.3369 CDS CYYO01000011.1 89349 88240 -3 - 1110 hypothetical protein - none -
fig|6666666.230098.peg.3370 CDS CYYO01000011.1 89607 89386 -3 - 222 FIG00408893: hypothetical protein - none -
fig|6666666.230098.peg.3371 CDS CYYO01000011.1 90694 89630 -1 - 1065 hypothetical protein - none -
fig|6666666.230098.peg.3372 CDS CYYO01000011.1 90947 90738 -2 - 210 hypothetical protein - none -
fig|6666666.230098.peg.3373 CDS CYYO01000011.1 91178 90966 -2 - 213 hypothetical protein - none -
fig|6666666.230098.peg.3374 CDS CYYO01000011.1 93246 91474 -3 - 1773 DNA topoisomerase III (EC 5.99.1.2) DNA processing cluster;
DNA topoisomerases, Type I, ATP-independent
fig|6666666.230098.peg.3375 CDS CYYO01000011.1 93596 93321 -2 - 276 hypothetical protein - none -
fig|6666666.230098.peg.3376 CDS CYYO01000011.1 95486 93651 -2 - 1836 FIG00936597: hypothetical protein - none -
fig|6666666.230098.peg.3377 CDS CYYO01000011.1 96341 97564 2 + 1224 Mobile element protein - none -
fig|6666666.230098.peg.3378 CDS CYYO01000011.1 97944 98606 3 + 663 Transcription antitermination protein UpdY Transcription factors bacterial
fig|6666666.230098.peg.3379 CDS CYYO01000011.1 98631 99737 3 + 1107 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) Teichoic and lipoteichoic acids biosynthesis
fig|6666666.230098.peg.3380 CDS CYYO01000011.1 99762 100556 3 + 795 Polysaccharide export outer membrane protein - none -
fig|6666666.230098.peg.3381 CDS CYYO01000011.1 100598 102964 2 + 2367 Tyrosine-protein kinase Wzc (EC 2.7.10.2) CBSS-258594.1.peg.3339
fig|6666666.230098.peg.3382 CDS CYYO01000011.1 103024 103728 1 + 705 Protein-tyrosine-phosphatase (EC 3.1.3.48) - none -
fig|6666666.230098.peg.3383 CDS CYYO01000011.1 103807 105015 1 + 1209 UDP-glucose dehydrogenase (EC 1.1.1.22) - none -
fig|6666666.230098.peg.3384 CDS CYYO01000011.1 105068 106198 2 + 1131 Glycosyltransferase (EC 2.4.1.-) - none -
fig|6666666.230098.peg.3385 CDS CYYO01000011.1 106219 107184 1 + 966 probable glycosyl transferase - none -
fig|6666666.230098.peg.3386 CDS CYYO01000011.1 107616 108632 3 + 1017 Lipopolysaccharide biosynthesis protein WzxC - none -
fig|6666666.230098.peg.3387 CDS CYYO01000011.1 108668 109573 2 + 906 Glycosyl transferase, family 8 - none -
fig|6666666.230098.peg.3388 CDS CYYO01000011.1 109576 110757 1 + 1182 Succinoglycan biosynthesis protein - none -
fig|6666666.230098.peg.3389 CDS CYYO01000011.1 110774 112075 2 + 1302 hypothetical protein - none -
fig|6666666.230098.peg.3390 CDS CYYO01000011.1 112078 113232 1 + 1155 hypothetical protein - none -
fig|6666666.230098.peg.3391 CDS CYYO01000011.1 113245 114036 1 + 792 Polysaccharide deacetylase - none -
fig|6666666.230098.peg.3392 CDS CYYO01000011.1 114552 114749 3 + 198 hypothetical protein - none -
fig|6666666.230098.peg.3393 CDS CYYO01000011.1 114754 115614 1 + 861 HYPOTHETICAL TRANSMEMBRANE PROTEIN - none -
fig|6666666.230098.peg.3394 CDS CYYO01000011.1 116204 117226 2 + 1023 Alpha-1,4-N-acetylgalactosamine transferase PglJ (EC 2.4.1.-) N-linked Glycosylation in Bacteria
fig|6666666.230098.peg.3395 CDS CYYO01000011.1 117223 117651 1 + 429 Maltose O-acetyltransferase (EC 2.3.1.79) Maltose and Maltodextrin Utilization
fig|6666666.230098.peg.3396 CDS CYYO01000011.1 118457 118621 2 + 165 Galactoside O-acetyltransferase (EC 2.3.1.18) Lactose utilization
fig|6666666.230098.peg.3397 CDS CYYO01000011.1 118628 119821 2 + 1194 FIG00936240: hypothetical protein - none -
fig|6666666.230098.peg.3398 CDS CYYO01000011.1 119834 120532 2 + 699 N-acetylmannosaminyltransferase (EC 2.4.1.187) Teichoic and lipoteichoic acids biosynthesis
fig|6666666.230098.peg.3399 CDS CYYO01000011.1 120544 121704 1 + 1161 UDP-N-acetylglucosamine 2-epimerase (EC 5.1.3.14) CMP-N-acetylneuraminate Biosynthesis;
Sialic Acid Metabolism
fig|6666666.230098.peg.3400 CDS CYYO01000011.1 121682 121804 2 + 123 hypothetical protein - none -
fig|6666666.230098.peg.3401 CDS CYYO01000011.1 121994 122164 2 + 171 hypothetical protein - none -
fig|6666666.230098.peg.3402 CDS CYYO01000011.1 122440 122574 1 + 135 hypothetical protein - none -
fig|6666666.230098.peg.3403 CDS CYYO01000011.1 122600 122908 2 + 309 hypothetical protein - none -
fig|6666666.230098.peg.3404 CDS CYYO01000011.1 122933 125194 2 + 2262 helicase, putative - none -
fig|6666666.230098.peg.3405 CDS CYYO01000011.1 125524 127899 1 + 2376 Two-component system sensor histidine kinase - none -
fig|6666666.230098.peg.3406 CDS CYYO01000011.1 127859 129148 2 + 1290 Response regulator of zinc sigma-54-dependent two-component system Zinc resistance
fig|6666666.230098.peg.3407 CDS CYYO01000011.1 129570 129154 -3 - 417 hypothetical protein - none -
fig|6666666.230098.peg.3408 CDS CYYO01000011.1 131906 129870 -2 - 2037 Putative mobilization protein BF0133 Conjugative transposon, Bacteroidales
fig|6666666.230098.peg.3409 CDS CYYO01000011.1 133166 131943 -2 - 1224 Putative conjugative transposon mobilization protein BF0132 Conjugative transposon, Bacteroidales
fig|6666666.230098.peg.3410 CDS CYYO01000011.1 133489 133175 -1 - 315 hypothetical protein clusted with conjugative transposons, BF0131 Conjugative transposon, Bacteroidales
fig|6666666.230098.peg.3411 CDS CYYO01000011.1 134241 134363 3 + 123 hypothetical protein - none -
fig|6666666.230098.peg.3412 CDS CYYO01000011.1 134374 135135 1 + 762 Conjugative transposon protein TraA Conjugative transposon, Bacteroidales
fig|6666666.230098.peg.3413 CDS CYYO01000011.1 135144 135593 3 + 450 Conjugative transposon protein TraB Conjugative transposon, Bacteroidales
fig|6666666.230098.peg.3414 CDS CYYO01000011.1 135710 136249 2 + 540 Conjugative transposon protein TraD Conjugative transposon, Bacteroidales
fig|6666666.230098.peg.3415 CDS CYYO01000011.1 137819 136716 -2 - 1104 hypothetical protein - none -
fig|6666666.230098.peg.3416 CDS CYYO01000011.1 138721 137888 -1 - 834 hypothetical protein - none -
fig|6666666.230098.peg.3417 CDS CYYO01000011.1 139564 139839 1 + 276 Conjugative transposon protein TraE Conjugative transposon, Bacteroidales
fig|6666666.230098.peg.3418 CDS CYYO01000011.1 139845 140171 3 + 327 Conjugative transposon protein TraF Conjugative transposon, Bacteroidales
fig|6666666.230098.peg.3419 CDS CYYO01000011.1 140168 142702 2 + 2535 Conjugative transposon protein TraG Conjugative transposon, Bacteroidales
fig|6666666.230098.peg.3420 CDS CYYO01000011.1 142717 143055 1 + 339 Conjugative transposon protein TraH Conjugative transposon, Bacteroidales
fig|6666666.230098.peg.3421 CDS CYYO01000011.1 143052 143681 3 + 630 Conjugative transposon protein TraI Conjugative transposon, Bacteroidales
fig|6666666.230098.peg.3422 CDS CYYO01000011.1 143684 144697 2 + 1014 Conjugative transposon protein TraJ Conjugative transposon, Bacteroidales
fig|6666666.230098.peg.3423 CDS CYYO01000011.1 144820 145443 1 + 624 Conjugative transposon protein TraK Conjugative transposon, Bacteroidales
fig|6666666.230098.peg.3424 CDS CYYO01000011.1 145440 145739 3 + 300 Conjugative transposon protein TraL Conjugative transposon, Bacteroidales
fig|6666666.230098.peg.3425 CDS CYYO01000011.1 145690 146997 1 + 1308 Conjugative transposon protein TraM Conjugative transposon, Bacteroidales
fig|6666666.230098.peg.3426 CDS CYYO01000011.1 147047 147961 2 + 915 Conjugative transposon protein TraN Conjugative transposon, Bacteroidales
fig|6666666.230098.peg.3427 CDS CYYO01000011.1 147958 148545 1 + 588 Conjugative transposon protein TraO Conjugative transposon, Bacteroidales
fig|6666666.230098.peg.3428 CDS CYYO01000011.1 148567 149028 1 + 462 Conjugative transposon protein TraQ Conjugative transposon, Bacteroidales
fig|6666666.230098.peg.3429 CDS CYYO01000011.1 149025 149504 3 + 480 Lysozyme-related protein - none -
fig|6666666.230098.peg.3430 CDS CYYO01000011.1 150712 149573 -1 - 1140 FIG00896816: hypothetical protein - none -
fig|6666666.230098.peg.3431 CDS CYYO01000011.1 151637 150756 -2 - 882 Phage protein - none -
fig|6666666.230098.peg.3432 CDS CYYO01000011.1 152885 151650 -2 - 1236 FIG00899322: hypothetical protein - none -
fig|6666666.230098.peg.3433 CDS CYYO01000011.1 153574 152918 -1 - 657 Type I restriction enzyme, M subunit - none -
fig|6666666.230098.peg.3434 CDS CYYO01000011.1 154466 153645 -2 - 822 FIG00896576: hypothetical protein - none -
fig|6666666.230098.peg.3435 CDS CYYO01000011.1 154731 154453 -3 - 279 FIG00411855: hypothetical protein - none -
fig|6666666.230098.peg.3436 CDS CYYO01000011.1 154860 154976 3 + 117 hypothetical protein - none -
fig|6666666.230098.peg.3437 CDS CYYO01000011.1 155303 155013 -2 - 291 FIG00898875: hypothetical protein - none -
fig|6666666.230098.peg.3438 CDS CYYO01000011.1 155634 155978 3 + 345 FIG00897117: hypothetical protein - none -
fig|6666666.230098.peg.3439 CDS CYYO01000011.1 156747 156037 -3 - 711 FIG00899242: hypothetical protein - none -
fig|6666666.230098.peg.3440 CDS CYYO01000011.1 157450 156749 -1 - 702 hypothetical protein - none -
fig|6666666.230098.peg.3441 CDS CYYO01000011.1 158486 157461 -2 - 1026 FIG00896987: hypothetical protein - none -
fig|6666666.230098.peg.3442 CDS CYYO01000011.1 158703 158494 -3 - 210 hypothetical protein - none -
fig|6666666.230098.peg.3443 CDS CYYO01000011.1 158978 158679 -2 - 300 hypothetical protein - none -
fig|6666666.230098.peg.3444 CDS CYYO01000011.1 159574 158975 -1 - 600 FIG00897967: hypothetical protein - none -
fig|6666666.230098.peg.3445 CDS CYYO01000011.1 160119 159709 -3 - 411 FIG00898764: hypothetical protein - none -
fig|6666666.230098.peg.3446 CDS CYYO01000011.1 160412 160170 -2 - 243 hypothetical protein - none -
fig|6666666.230098.peg.3447 CDS CYYO01000011.1 161378 160491 -2 - 888 hypothetical protein - none -
fig|6666666.230098.peg.3448 CDS CYYO01000011.1 162524 161382 -2 - 1143 FIG00898363: hypothetical protein - none -
fig|6666666.230098.peg.3449 CDS CYYO01000011.1 162805 162509 -1 - 297 hypothetical protein - none -
fig|6666666.230098.peg.3450 CDS CYYO01000011.1 162832 163026 1 + 195 hypothetical protein - none -
fig|6666666.230098.peg.3451 CDS CYYO01000011.1 163209 163625 3 + 417 hypothetical protein - none -
fig|6666666.230098.peg.3452 CDS CYYO01000011.1 164138 165373 2 + 1236 Mobile element protein - none -
fig|6666666.230098.peg.3453 CDS CYYO01000011.1 166004 165447 -2 - 558 Mobile element protein - none -
fig|6666666.230098.peg.3454 CDS CYYO01000012.1 407 853 2 + 447 FIG00403079: hypothetical protein - none -
fig|6666666.230098.peg.3455 CDS CYYO01000012.1 1053 1865 3 + 813 MotA/TolQ/ExbB proton channel family protein Ton and Tol transport systems
fig|6666666.230098.peg.3456 CDS CYYO01000012.1 1959 2564 3 + 606 Biopolymer transport protein ExbD/TolR Ton and Tol transport systems
fig|6666666.230098.peg.3457 CDS CYYO01000012.1 2604 3254 3 + 651 Biopolymer transport protein ExbD/TolR Ton and Tol transport systems
fig|6666666.230098.peg.3458 CDS CYYO01000012.1 3283 4098 1 + 816 Ferric siderophore transport system, periplasmic binding protein TonB Hemin transport system;
Ton and Tol transport systems
fig|6666666.230098.peg.3459 CDS CYYO01000012.1 4110 5060 3 + 951 Putative phosphate ABC transporter, phosphate-binding component - none -
fig|6666666.230098.peg.3460 CDS CYYO01000012.1 5066 6511 2 + 1446 Tetratricopeptide repeat family protein - none -
fig|6666666.230098.peg.3461 CDS CYYO01000012.1 7488 6559 -3 - 930 Transcriptional regulator, AraC family - none -
fig|6666666.230098.peg.3462 CDS CYYO01000012.1 7729 8580 1 + 852 ABC transporter, ATP-binding protein - none -
fig|6666666.230098.peg.3463 CDS CYYO01000012.1 8580 9410 3 + 831 FIG00403434: hypothetical protein - none -
fig|6666666.230098.peg.3464 CDS CYYO01000012.1 9413 9781 2 + 369 Transcriptional regulator, GntR family - none -
fig|6666666.230098.peg.3465 CDS CYYO01000012.1 9794 10627 2 + 834 FIG00402879: hypothetical protein - none -
fig|6666666.230098.peg.3466 CDS CYYO01000012.1 10680 11990 3 + 1311 Anaerobic C4-dicarboxylate transporter - none -
fig|6666666.230098.peg.3467 CDS CYYO01000012.1 12544 12380 -1 - 165 hypothetical protein - none -
fig|6666666.230098.peg.3468 CDS CYYO01000012.1 12943 13527 1 + 585 Transcriptional regulator, TetR family - none -
fig|6666666.230098.peg.3469 CDS CYYO01000012.1 13559 14305 2 + 747 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) Fatty Acid Biosynthesis FASII
fig|6666666.230098.peg.3470 CDS CYYO01000012.1 14398 15069 1 + 672 Similar to tRNA pseudouridine synthase C, group TruC1 RNA pseudouridine syntheses;
Ribosome biogenesis bacterial
fig|6666666.230098.peg.3471 CDS CYYO01000012.1 15050 17617 2 + 2568 ApeH acylamino-acid-releasing enzyme (EC 3.4.19.1) - none -
fig|6666666.230098.peg.3472 CDS CYYO01000012.1 17894 17712 -2 - 183 hypothetical protein - none -
fig|6666666.230098.peg.3473 CDS CYYO01000012.1 19544 18117 -2 - 1428 RteB, two-component system response regulator - none -
fig|6666666.230098.peg.3474 CDS CYYO01000012.1 19638 20477 3 + 840 Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) Queuosine-Archaeosine Biosynthesis
fig|6666666.230098.peg.3475 CDS CYYO01000012.1 20502 21740 3 + 1239 putative zinc protease - none -
fig|6666666.230098.peg.3476 CDS CYYO01000012.1 21742 23085 1 + 1344 Multidrug and toxin extrusion (MATE) family efflux pump YdhE/NorM, homolog Multidrug Resistance Efflux Pumps
fig|6666666.230098.peg.3477 CDS CYYO01000012.1 23090 25384 2 + 2295 Two-component system sensor histidine kinase - none -
fig|6666666.230098.peg.3478 CDS CYYO01000012.1 25507 30042 1 + 4536 FIG00938273: hypothetical protein - none -
fig|6666666.230098.peg.3479 CDS CYYO01000012.1 30052 32406 1 + 2355 FIG00896779: hypothetical protein - none -
fig|6666666.230098.peg.3480 CDS CYYO01000012.1 32533 33444 1 + 912 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) Ammonia assimilation;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.230098.peg.3481 CDS CYYO01000012.1 34145 35065 2 + 921 Integrase protein - none -
fig|6666666.230098.peg.3482 CDS CYYO01000012.1 35544 36077 3 + 534 FIG00415902: hypothetical protein - none -
fig|6666666.230098.peg.3483 CDS CYYO01000012.1 36091 37554 1 + 1464 Immunoreactive 53 kDa antigen PG123 - none -
fig|6666666.230098.peg.3484 CDS CYYO01000012.1 37628 38755 2 + 1128 FIG00404199: hypothetical protein - none -
fig|6666666.230098.peg.3485 CDS CYYO01000012.1 38881 39819 1 + 939 FIG00407079: hypothetical protein - none -
fig|6666666.230098.peg.3486 CDS CYYO01000012.1 39839 40846 2 + 1008 hypothetical protein - none -
fig|6666666.230098.peg.3487 CDS CYYO01000012.1 40866 44162 3 + 3297 hypothetical protein - none -
fig|6666666.230098.peg.3488 CDS CYYO01000012.1 44169 45143 3 + 975 hypothetical protein - none -
fig|6666666.230098.peg.3489 CDS CYYO01000012.1 45493 45825 1 + 333 FIG00898702: hypothetical protein - none -
fig|6666666.230098.peg.3490 CDS CYYO01000012.1 46023 46835 3 + 813 Slr1117 protein - none -
fig|6666666.230098.peg.3491 CDS CYYO01000012.1 47758 46910 -1 - 849 Transcriptional regulator, AraC family - none -
fig|6666666.230098.peg.3492 CDS CYYO01000012.1 47979 49472 3 + 1494 Two-component system sensor histidine kinase - none -
fig|6666666.230098.peg.3493 CDS CYYO01000012.1 49577 51538 2 + 1962 ABC transporter ATP-binding protein - none -
fig|6666666.230098.peg.3494 CDS CYYO01000012.1 51574 53595 1 + 2022 Endothelin-converting enzyme 1 precursor (EC 3.4.24.71) - none -
fig|6666666.230098.peg.3495 CDS CYYO01000012.1 53756 55279 2 + 1524 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) 5-FCL-like protein;
De Novo Purine Biosynthesis;
De Novo Purine Biosynthesis
fig|6666666.230098.peg.3496 CDS CYYO01000012.1 55404 56426 3 + 1023 Rod shape-determining protein MreB Bacterial Cell Division;
Bacterial Cytoskeleton;
Bacterial cell division cluster
fig|6666666.230098.peg.3497 CDS CYYO01000012.1 56537 57271 2 + 735 Rod shape-determining protein MreC Bacterial Cell Division;
Bacterial Cytoskeleton;
Bacterial cell division cluster;
CBSS-354.1.peg.2917
fig|6666666.230098.peg.3498 CDS CYYO01000012.1 57378 57881 3 + 504 Rod shape-determining protein MreD Bacterial Cell Division;
Bacterial Cytoskeleton;
Bacterial cell division cluster;
CBSS-354.1.peg.2917
fig|6666666.230098.peg.3499 CDS CYYO01000012.1 57904 59769 1 + 1866 Penicillin-binding protein 2 (PBP-2) 16S rRNA modification within P site of ribosome;
Bacterial cell division cluster;
CBSS-83331.1.peg.3039;
Peptidoglycan Biosynthesis
fig|6666666.230098.peg.3500 CDS CYYO01000012.1 59894 61318 2 + 1425 Rod shape-determining protein RodA Bacterial Cytoskeleton;
Bacterial cell division cluster;
Peptidoglycan Biosynthesis
fig|6666666.230098.peg.3501 CDS CYYO01000012.1 62121 61636 -3 - 486 GldH - none -
fig|6666666.230098.peg.3502 CDS CYYO01000012.1 63475 62099 -1 - 1377 Signal peptidase-like protein Heat shock dnaK gene cluster extended
fig|6666666.230098.peg.3503 CDS CYYO01000012.1 64691 63564 -2 - 1128 DNA polymerase III delta prime subunit (EC 2.7.7.7) - none -
fig|6666666.230098.peg.3504 CDS CYYO01000012.1 65717 64764 -2 - 954 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) 5-FCL-like protein;
Methionine Biosynthesis;
One-carbon metabolism by tetrahydropterines;
Serine-glyoxylate cycle
fig|6666666.230098.peg.3505 CDS CYYO01000012.1 67716 65809 -3 - 1908 FIG00414387: hypothetical protein - none -
fig|6666666.230098.peg.3506 CDS CYYO01000012.1 68057 68974 2 + 918 Homoserine O-succinyltransferase (EC 2.3.1.46) Methionine Biosynthesis
fig|6666666.230098.peg.3507 CDS CYYO01000012.1 68993 70858 2 + 1866 Putative collagenase - none -
fig|6666666.230098.peg.3508 CDS CYYO01000012.1 70900 71955 1 + 1056 FIG00406392: hypothetical protein - none -
fig|6666666.230098.peg.3509 CDS CYYO01000012.1 72026 72319 2 + 294 FIG00414669: hypothetical protein - none -
fig|6666666.230098.peg.3510 CDS CYYO01000012.1 72357 72719 3 + 363 VapC toxin protein Toxin-antitoxin replicon stabilization systems
fig|6666666.230098.peg.3511 CDS CYYO01000012.1 75270 72832 -3 - 2439 TonB-dependent receptor Ton and Tol transport systems
fig|6666666.230098.peg.3512 CDS CYYO01000012.1 80091 76240 -3 - 3852 DNA-binding response regulator, AraC family - none -
fig|6666666.230098.peg.3513 CDS CYYO01000012.1 81961 80339 -1 - 1623 NAD-utilizing dehydrogenases - none -
fig|6666666.230098.peg.3514 CDS CYYO01000012.1 83334 81967 -3 - 1368 DNA repair protein RadA DNA repair, bacterial;
Proteolysis in bacteria, ATP-dependent
fig|6666666.230098.peg.3515 CDS CYYO01000012.1 83456 83998 2 + 543 Carbonic anhydrase (EC 4.2.1.1) - none -
fig|6666666.230098.peg.3516 CDS CYYO01000012.1 85046 84009 -2 - 1038 L-asparaginase I, cytoplasmic (EC 3.5.1.1) Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
fig|6666666.230098.peg.3517 CDS CYYO01000012.1 85495 87927 1 + 2433 Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) Lysine Biosynthesis DAP Pathway;
Lysine Biosynthesis DAP Pathway, GJO scratch;
Methionine Biosynthesis;
Threonine and Homoserine Biosynthesis;
Threonine and Homoserine Biosynthesis
fig|6666666.230098.peg.3518 CDS CYYO01000012.1 87949 89208 1 + 1260 Predicted functional analog of homoserine kinase (EC 2.7.1.-) Threonine and Homoserine Biosynthesis
fig|6666666.230098.peg.3519 CDS CYYO01000012.1 89279 90580 2 + 1302 Threonine synthase (EC 4.2.3.1) Threonine and Homoserine Biosynthesis
fig|6666666.230098.peg.3520 CDS CYYO01000012.1 91389 91066 -3 - 324 hypothetical protein - none -
fig|6666666.230098.peg.3521 CDS CYYO01000012.1 91574 91374 -2 - 201 hypothetical protein - none -
fig|6666666.230098.peg.3522 CDS CYYO01000012.1 91584 92519 3 + 936 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.230098.peg.3523 CDS CYYO01000012.1 93156 92479 -3 - 678 Thiamin pyrophosphokinase (EC 2.7.6.2) Thiamin biosynthesis
fig|6666666.230098.peg.3524 CDS CYYO01000012.1 93814 93164 -1 - 651 Predicted thiamin transporter PnuT Thiamin biosynthesis
fig|6666666.230098.peg.3525 CDS CYYO01000012.1 96111 93814 -3 - 2298 Thiamin-regulated outer membrane receptor Omr1 Thiamin biosynthesis
fig|6666666.230098.peg.3526 CDS CYYO01000012.1 96362 97231 2 + 870 Small-conductance mechanosensitive channel - none -
fig|6666666.230098.peg.3527 CDS CYYO01000012.1 97601 97359 -2 - 243 FIG00404225: hypothetical protein - none -
fig|6666666.230098.peg.3528 CDS CYYO01000012.1 97730 98272 2 + 543 hypothetical protein - none -
fig|6666666.230098.peg.3529 CDS CYYO01000012.1 98564 98439 -2 - 126 hypothetical protein - none -
fig|6666666.230098.peg.3530 CDS CYYO01000012.1 98725 99165 1 + 441 hypothetical protein - none -
fig|6666666.230098.peg.3531 CDS CYYO01000012.1 99400 99609 1 + 210 hypothetical protein - none -
fig|6666666.230098.peg.3532 CDS CYYO01000012.1 100246 101622 1 + 1377 Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps Multidrug Resistance Efflux Pumps;
Riboflavin, FMN and FAD metabolism in plants
fig|6666666.230098.peg.3533 CDS CYYO01000012.1 101762 102601 2 + 840 Transcriptional regulator, AraC family - none -
fig|6666666.230098.peg.3534 CDS CYYO01000012.1 102610 103383 1 + 774 GCN5-related N-acetyltransferase - none -
fig|6666666.230098.peg.3535 CDS CYYO01000012.1 103388 103618 2 + 231 Tetracycline resistance element mobilization regulatory protein rteC - none -
fig|6666666.230098.peg.3536 CDS CYYO01000012.1 103862 103978 2 + 117 hypothetical protein - none -
fig|6666666.230098.peg.3537 CDS CYYO01000012.1 104287 104045 -1 - 243 Integrase - none -
fig|6666666.230098.peg.3538 CDS CYYO01000012.1 104997 104881 -3 - 117 hypothetical protein - none -
fig|6666666.230098.peg.3539 CDS CYYO01000012.1 105949 105194 -1 - 756 Possible restriction endonuclease - none -
fig|6666666.230098.peg.3540 CDS CYYO01000012.1 106839 105946 -3 - 894 hypothetical protein - none -
fig|6666666.230098.peg.3541 CDS CYYO01000012.1 109373 107271 -2 - 2103 putative two-component system sensor histidine kinase, putative heat shock protein - none -
fig|6666666.230098.peg.3542 CDS CYYO01000012.1 110626 109370 -1 - 1257 DNA-cytosine methyltransferase - none -
fig|6666666.230098.peg.3543 CDS CYYO01000012.1 111538 110696 -1 - 843 clindamycin resistance transfer factor BtgB - none -
fig|6666666.230098.peg.3544 CDS CYYO01000012.1 112202 111618 -2 - 585 clindamycin resistance transfer factor BtgA - none -
fig|6666666.230098.peg.3545 CDS CYYO01000012.1 114422 113724 -2 - 699 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) Metallocarboxypeptidases (EC 3.4.17.-);
Murein Hydrolases;
Peptidoglycan Biosynthesis
fig|6666666.230098.peg.3546 CDS CYYO01000012.1 115087 114425 -1 - 663 PROBABLE ANTIBIOTIC-TRANSPORT INTEGRAL MEMBRANE LEUCINE AND VALINE RICH PROTEIN ABC TRANSPORTER - none -
fig|6666666.230098.peg.3547 CDS CYYO01000012.1 115932 115084 -3 - 849 ABC-type multidrug transport system, ATPase component - none -
fig|6666666.230098.peg.3548 CDS CYYO01000012.1 116646 116056 -3 - 591 Transcriptional regulator, TetR family - none -
fig|6666666.230098.peg.3549 CDS CYYO01000012.1 117029 116877 -2 - 153 hypothetical protein - none -
fig|6666666.230098.peg.3550 CDS CYYO01000012.1 117235 117528 1 + 294 Similar to conjugative transposon protein TraH - none -
fig|6666666.230098.peg.3551 CDS CYYO01000012.1 117582 117875 3 + 294 hypothetical protein - none -
fig|6666666.230098.peg.3552 CDS CYYO01000012.1 119300 118158 -2 - 1143 Tyrosine type site-specific recombinase - none -
fig|6666666.230098.peg.3553 CDS CYYO01000012.1 119980 119813 -1 - 168 hypothetical protein - none -
fig|6666666.230098.peg.3554 CDS CYYO01000012.1 120411 120103 -3 - 309 hypothetical protein - none -
fig|6666666.230098.peg.3555 CDS CYYO01000012.1 120708 121013 3 + 306 hypothetical protein - none -
fig|6666666.230098.peg.3556 CDS CYYO01000012.1 121850 121068 -2 - 783 ThiF family protein, ubiquitin-activating enzyme - none -
fig|6666666.230098.peg.3557 CDS CYYO01000012.1 122548 121847 -1 - 702 hypothetical protein - none -
fig|6666666.230098.peg.3558 CDS CYYO01000012.1 123663 122554 -3 - 1110 hypothetical protein - none -
fig|6666666.230098.peg.3559 CDS CYYO01000012.1 123921 123700 -3 - 222 FIG00408893: hypothetical protein - none -
fig|6666666.230098.peg.3560 CDS CYYO01000012.1 124961 123966 -2 - 996 hypothetical protein - none -
fig|6666666.230098.peg.3561 CDS CYYO01000012.1 125213 125004 -2 - 210 hypothetical protein - none -
fig|6666666.230098.peg.3562 CDS CYYO01000012.1 125447 125232 -2 - 216 hypothetical protein - none -
fig|6666666.230098.peg.3563 CDS CYYO01000012.1 125485 125652 1 + 168 hypothetical protein - none -
fig|6666666.230098.peg.3564 CDS CYYO01000012.1 127161 125740 -3 - 1422 DNA topoisomerase III (EC 5.99.1.2) DNA processing cluster;
DNA topoisomerases, Type I, ATP-independent
fig|6666666.230098.peg.3565 CDS CYYO01000012.1 127246 128109 1 + 864 FIG01290742: hypothetical protein - none -
fig|6666666.230098.peg.3566 CDS CYYO01000012.1 128563 128853 1 + 291 putative excisionase - none -
fig|6666666.230098.peg.3567 CDS CYYO01000012.1 129158 129042 -2 - 117 hypothetical protein - none -
fig|6666666.230098.peg.3568 CDS CYYO01000012.1 129209 129817 2 + 609 hypothetical protein - none -
fig|6666666.230098.peg.3569 CDS CYYO01000012.1 130092 131528 3 + 1437 Mobilization protein BmpH - none -
fig|6666666.230098.peg.3570 CDS CYYO01000012.1 132465 131518 -3 - 948 hypothetical protein - none -
fig|6666666.230098.peg.3571 CDS CYYO01000012.1 133404 132598 -3 - 807 Integrase/recombinase (XerC/CodV family) - none -
fig|6666666.230098.peg.3572 CDS CYYO01000012.1 133465 134838 1 + 1374 Type I restriction-modification system, specificity subunit S (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.230098.peg.3573 CDS CYYO01000012.1 135168 134818 -3 - 351 Type I restriction-modification system, specificity subunit S (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.230098.peg.3574 CDS CYYO01000012.1 135857 135303 -2 - 555 Type I restriction-modification system, specificity subunit S (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.230098.peg.3575 CDS CYYO01000012.1 137473 135890 -1 - 1584 Type I restriction-modification system, specificity subunit S (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.230098.peg.3576 CDS CYYO01000012.1 137785 137489 -1 - 297 hypothetical protein - none -
fig|6666666.230098.peg.3577 CDS CYYO01000012.1 139061 138036 -2 - 1026 FIG074102: hypothetical protein - none -
fig|6666666.230098.peg.3578 CDS CYYO01000012.1 140571 139099 -3 - 1473 Type I restriction-modification system, DNA-methyltransferase subunit M (EC 2.1.1.72) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.230098.peg.3579 CDS CYYO01000012.1 143021 140625 -2 - 2397 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) Restriction-Modification System;
Type I Restriction-Modification
fig|6666666.230098.peg.3580 CDS CYYO01000012.1 143294 143088 -2 - 207 hypothetical protein - none -
fig|6666666.230098.peg.3581 CDS CYYO01000012.1 143471 143358 -2 - 114 hypothetical protein - none -
fig|6666666.230098.peg.3582 CDS CYYO01000012.1 144615 143461 -3 - 1155 Integrase - none -
fig|6666666.230098.peg.3583 CDS CYYO01000012.1 145620 144640 -3 - 981 Integrase - none -
fig|6666666.230098.peg.3584 CDS CYYO01000012.1 145996 146349 1 + 354 FIG01290742: hypothetical protein - none -
fig|6666666.230098.peg.3585 CDS CYYO01000012.1 146392 146784 1 + 393 hypothetical protein - none -
fig|6666666.230098.peg.3586 CDS CYYO01000012.1 146791 147405 1 + 615 Conjugative transposon protein TraK Conjugative transposon, Bacteroidales
fig|6666666.230098.peg.3587 CDS CYYO01000012.1 147418 147807 1 + 390 FIG00403140: hypothetical protein - none -
fig|6666666.230098.peg.3588 CDS CYYO01000012.1 147804 148949 3 + 1146 Conjugative transposon protein TraM Conjugative transposon, Bacteroidales
fig|6666666.230098.peg.3589 CDS CYYO01000012.1 148964 149317 2 + 354 hypothetical protein - none -
fig|6666666.230098.peg.3590 CDS CYYO01000012.1 149314 150093 1 + 780 Adenine-specific methyltransferase (EC 2.1.1.72) CBSS-257314.1.peg.752
fig|6666666.230098.peg.3591 CDS CYYO01000012.1 150134 150991 2 + 858 Conjugative transposon protein TraN Conjugative transposon, Bacteroidales
fig|6666666.230098.peg.3592 CDS CYYO01000012.1 150988 151500 1 + 513 FIG00407458: hypothetical protein - none -
fig|6666666.230098.peg.3593 CDS CYYO01000012.1 151509 152180 3 + 672 FIG00403811: hypothetical protein - none -
fig|6666666.230098.peg.3594 CDS CYYO01000012.1 153221 152229 -2 - 993 hypothetical protein - none -
fig|6666666.230098.peg.3595 CDS CYYO01000012.1 153937 153218 -1 - 720 hypothetical protein - none -
fig|6666666.230098.peg.3596 CDS CYYO01000012.1 154089 156275 3 + 2187 Putative mobilization protein BF0133 Conjugative transposon, Bacteroidales
fig|6666666.230098.peg.3597 CDS CYYO01000012.1 156287 156805 2 + 519 Lysozyme-related protein - none -
fig|6666666.230098.peg.3598 CDS CYYO01000012.1 157021 157515 1 + 495 FIG00410414: hypothetical protein - none -
fig|6666666.230098.peg.3599 CDS CYYO01000012.1 157949 157581 -2 - 369 FIG00408093: hypothetical protein - none -
fig|6666666.230098.peg.3600 CDS CYYO01000012.1 158255 157983 -2 - 273 FIG00402868: hypothetical protein - none -
fig|6666666.230098.peg.3601 CDS CYYO01000012.1 158397 158263 -3 - 135 FIG00405292: hypothetical protein - none -
fig|6666666.230098.peg.3602 CDS CYYO01000013.1 269 847 2 + 579 COG1399 protein in cluster with ribosomal protein L32p, Bacteroidetes/Chlorobi subfamily - none -
fig|6666666.230098.peg.3603 CDS CYYO01000013.1 1169 2173 2 + 1005 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) - none -
fig|6666666.230098.peg.3604 CDS CYYO01000013.1 2259 3140 3 + 882 GTP-binding protein Era Bacterial Cell Division;
Glycyl-tRNA synthetase containing cluster;
Universal GTPases
fig|6666666.230098.peg.3605 CDS CYYO01000013.1 3190 4503 1 + 1314 GTP-binding protein EngA Universal GTPases
fig|6666666.230098.peg.3606 CDS CYYO01000013.1 5388 4618 -3 - 771 Methionine ABC transporter ATP-binding protein Methionine Biosynthesis;
Methionine Degradation
fig|6666666.230098.peg.3607 CDS CYYO01000013.1 6128 5385 -2 - 744 ABC-type transport system involved in resistance to organic solvents, permease component - none -
fig|6666666.230098.peg.3608 CDS CYYO01000013.1 6206 7051 2 + 846 Lipopolysaccharide ABC transporter, ATP-binding protein LptB - none -
fig|6666666.230098.peg.3609 CDS CYYO01000013.1 7382 7134 -2 - 249 RNA binding protein - none -
fig|6666666.230098.peg.3610 CDS CYYO01000013.1 7857 9212 3 + 1356 Cell division trigger factor (EC 5.2.1.8) Bacterial Cell Division
fig|6666666.230098.peg.3611 CDS CYYO01000013.1 9344 10006 2 + 663 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) Proteolysis in bacteria, ATP-dependent;
cAMP signaling in bacteria
fig|6666666.230098.peg.3612 CDS CYYO01000013.1 10090 11253 1 + 1164 ATP-dependent Clp protease ATP-binding subunit ClpX Proteolysis in bacteria, ATP-dependent
fig|6666666.230098.peg.3613 CDS CYYO01000013.1 11428 13611 1 + 2184 ATP-dependent DNA helicase RecQ DNA repair, bacterial RecFOR pathway
fig|6666666.230098.peg.3614 CDS CYYO01000013.1 13870 15189 1 + 1320 Inosine-5@1-monophosphate dehydrogenase (EC 1.1.1.205) Purine conversions;
Purine salvage cluster
fig|6666666.230098.peg.3615 CDS CYYO01000013.1 15279 16841 3 + 1563 Survival protein SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA) (EC 5.2.1.8) ECSIG4-SIG7;
Peptidyl-prolyl cis-trans isomerase;
Periplasmic Stress Response
fig|6666666.230098.peg.3616 CDS CYYO01000013.1 16986 17747 3 + 762 FIG00898614: hypothetical protein - none -
fig|6666666.230098.peg.3617 CDS CYYO01000013.1 17770 19125 1 + 1356 Survival protein SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA) (EC 5.2.1.8) ECSIG4-SIG7;
Peptidyl-prolyl cis-trans isomerase;
Periplasmic Stress Response
fig|6666666.230098.peg.3618 CDS CYYO01000013.1 19151 20872 2 + 1722 FIG00937328: hypothetical protein - none -
fig|6666666.230098.peg.3619 CDS CYYO01000013.1 20877 21167 3 + 291 FIG00403378: hypothetical protein - none -
fig|6666666.230098.peg.3620 CDS CYYO01000013.1 21207 23123 3 + 1917 DNA mismatch repair protein MutL DNA repair, bacterial MutL-MutS system
fig|6666666.230098.peg.3621 CDS CYYO01000013.1 23268 24446 3 + 1179 Major outer membrane protein OmpA - none -
fig|6666666.230098.peg.3622 CDS CYYO01000013.1 25697 24603 -2 - 1095 Tryptophanyl-tRNA synthetase (EC 6.1.1.2) tRNA aminoacylation, Trp
fig|6666666.230098.peg.3623 CDS CYYO01000013.1 26416 25772 -1 - 645 putative DNA-binding protein - none -
fig|6666666.230098.peg.3624 CDS CYYO01000013.1 26556 26684 3 + 129 hypothetical protein - none -
fig|6666666.230098.peg.3625 CDS CYYO01000013.1 26850 26966 3 + 117 hypothetical protein - none -
fig|6666666.230098.peg.3626 CDS CYYO01000013.1 27058 30285 1 + 3228 Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) De Novo Pyrimidine Synthesis;
Macromolecular synthesis operon
fig|6666666.230098.peg.3627 CDS CYYO01000013.1 30414 30974 3 + 561 Maltose O-acetyltransferase (EC 2.3.1.79) Maltose and Maltodextrin Utilization
fig|6666666.230098.peg.3628 CDS CYYO01000013.1 31443 32789 3 + 1347 Adenylosuccinate lyase (EC 4.3.2.2) De Novo Purine Biosynthesis;
Purine conversions
fig|6666666.230098.peg.3629 CDS CYYO01000013.1 32926 34410 1 + 1485 Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70) RNA pseudouridine syntheses
fig|6666666.230098.peg.3630 CDS CYYO01000013.1 34440 35843 3 + 1404 Asparaginyl-tRNA synthetase (EC 6.1.1.22) tRNA aminoacylation, Asp and Asn
fig|6666666.230098.peg.3631 CDS CYYO01000013.1 35995 36486 1 + 492 FIG00402847: hypothetical protein - none -
fig|6666666.230098.peg.3632 CDS CYYO01000013.1 36825 37286 3 + 462 LSU ribosomal protein L13p (L13Ae) - none -
fig|6666666.230098.peg.3633 CDS CYYO01000013.1 37293 37679 3 + 387 SSU ribosomal protein S9p (S16e) Ribosome SSU bacterial
fig|6666666.230098.peg.3634 CDS CYYO01000013.1 37930 38685 1 + 756 SSU ribosomal protein S2p (SAe) CBSS-312309.3.peg.1965;
Ribosome SSU bacterial;
Ribosome recycling related cluster
fig|6666666.230098.peg.3635 CDS CYYO01000013.1 38808 39800 3 + 993 Translation elongation factor Ts CBSS-312309.3.peg.1965;
Ribosome recycling related cluster;
Translation elongation factors bacterial
fig|6666666.230098.peg.3636 CDS CYYO01000013.1 40255 39908 -1 - 348 Translation initiation factor SUI1-related protein Translation initiation factors bacterial
fig|6666666.230098.peg.3637 CDS CYYO01000013.1 40406 41062 2 + 657 Redox-sensitive transcriptional regulator (AT-rich DNA-binding protein) Oxidative stress
fig|6666666.230098.peg.3638 CDS CYYO01000013.1 41062 41679 1 + 618 Fumarylacetoacetate hydrolase family protein Gentisate degradation;
Salicylate and gentisate catabolism
fig|6666666.230098.peg.3639 CDS CYYO01000013.1 41944 42126 1 + 183 hypothetical protein - none -
fig|6666666.230098.peg.3640 CDS CYYO01000013.1 42249 43109 3 + 861 Mobile element protein - none -
fig|6666666.230098.peg.3641 CDS CYYO01000013.1 43685 43506 -2 - 180 Transcriptional regulator - none -
fig|6666666.230098.peg.3642 CDS CYYO01000013.1 43946 43728 -2 - 219 hypothetical protein - none -
fig|6666666.230098.peg.3643 CDS CYYO01000013.1 44383 43967 -1 - 417 hypothetical protein - none -
fig|6666666.230098.peg.3644 CDS CYYO01000013.1 45090 44449 -3 - 642 FIG00403233: hypothetical protein - none -
fig|6666666.230098.peg.3645 CDS CYYO01000013.1 45711 45106 -3 - 606 FIG00403233: hypothetical protein - none -
fig|6666666.230098.peg.3646 CDS CYYO01000013.1 46391 45735 -2 - 657 FIG00403233: hypothetical protein - none -
fig|6666666.230098.peg.3647 CDS CYYO01000013.1 47194 46400 -1 - 795 Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-) Lipoprotein Biosynthesis
fig|6666666.230098.peg.3648 CDS CYYO01000013.1 47860 47375 -1 - 486 FIG00418137: hypothetical protein - none -
fig|6666666.230098.peg.3649 CDS CYYO01000013.1 49024 48083 -1 - 942 Riboflavin kinase (EC 2.7.1.26) / FMN adenylyltransferase (EC 2.7.7.2) CBSS-350688.3.peg.1509;
CBSS-350688.3.peg.1509;
Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism;
Riboflavin, FMN and FAD metabolism in plants;
Riboflavin, FMN and FAD metabolism in plants;
riboflavin to FAD;
riboflavin to FAD
fig|6666666.230098.peg.3650 CDS CYYO01000013.1 49628 49008 -2 - 621 Haloacid dehalogenase-like hydrolase - none -
fig|6666666.230098.peg.3651 CDS CYYO01000013.1 52315 49631 -1 - 2685 Calcium-transporting ATPase - none -
fig|6666666.230098.peg.3652 CDS CYYO01000013.1 53572 52406 -1 - 1167 Two-component system sensor histidine kinase - none -
fig|6666666.230098.peg.3653 CDS CYYO01000013.1 53680 53841 1 + 162 Rubredoxin Rubrerythrin
fig|6666666.230098.peg.3654 CDS CYYO01000013.1 55535 53838 -2 - 1698 Sodium-dependent phosphate transporter NhaA, NhaD and Sodium-dependent phosphate transporters;
Phosphate metabolism
fig|6666666.230098.peg.3655 CDS CYYO01000013.1 55628 57292 2 + 1665 Uridine kinase (EC 2.7.1.48) - none -
fig|6666666.230098.peg.3656 CDS CYYO01000013.1 57335 58840 2 + 1506 Two-component system sensor histidine kinase - none -
fig|6666666.230098.peg.3657 CDS CYYO01000013.1 58963 58823 -1 - 141 hypothetical protein - none -
fig|6666666.230098.peg.3658 CDS CYYO01000013.1 59456 61150 2 + 1695 TPR-repeat-containing protein - none -
fig|6666666.230098.peg.3659 CDS CYYO01000013.1 61257 61670 3 + 414 hypothetical protein - none -
fig|6666666.230098.peg.3660 CDS CYYO01000013.1 62337 63662 3 + 1326 Thiol:disulfide interchange protein - none -
fig|6666666.230098.peg.3661 CDS CYYO01000013.1 63672 65273 3 + 1602 hypothetical protein - none -
fig|6666666.230098.peg.3662 CDS CYYO01000013.1 65283 67469 3 + 2187 ABC transporter ATP-binding protein - none -
fig|6666666.230098.peg.3663 CDS CYYO01000013.1 67486 68781 1 + 1296 putative hemolysin secretion protein - none -
fig|6666666.230098.peg.3664 CDS CYYO01000013.1 70370 68916 -2 - 1455 Xaa-Pro aminopeptidase (EC 3.4.11.9) Aminopeptidases (EC 3.4.11.-)
fig|6666666.230098.peg.3665 CDS CYYO01000013.1 70453 71943 1 + 1491 RNA polymerase sigma-54 factor RpoN Transcription initiation, bacterial sigma factors
fig|6666666.230098.peg.3666 CDS CYYO01000013.1 72037 72699 1 + 663 FIG00937061: hypothetical protein - none -
fig|6666666.230098.peg.3667 CDS CYYO01000013.1 72762 73148 3 + 387 Glycine cleavage system H protein Glycine and Serine Utilization
fig|6666666.230098.peg.3668 CDS CYYO01000013.1 73265 73774 2 + 510 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) De Novo Purine Biosynthesis
fig|6666666.230098.peg.3669 CDS CYYO01000013.1 73949 75757 2 + 1809 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (EC 1.17.7.1) CBSS-83331.1.peg.3039;
Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis
fig|6666666.230098.peg.3670 CDS CYYO01000013.1 76759 75761 -1 - 999 putative secreted protein - none -
fig|6666666.230098.peg.3671 CDS CYYO01000013.1 77538 76759 -3 - 780 FIG00653406: hypothetical protein - none -
fig|6666666.230098.peg.3672 CDS CYYO01000013.1 79211 77550 -2 - 1662 Choline-sulfatase (EC 3.1.6.6) - none -
fig|6666666.230098.peg.3673 CDS CYYO01000013.1 80967 79231 -3 - 1737 Arabinan endo-1,5-alpha-L-arabinosidase A - none -
fig|6666666.230098.peg.3674 CDS CYYO01000013.1 82720 81062 -1 - 1659 Arabinan endo-1,5-alpha-L-arabinosidase A - none -
fig|6666666.230098.peg.3675 CDS CYYO01000013.1 84420 82852 -3 - 1569 Choline-sulfatase (EC 3.1.6.6) - none -
fig|6666666.230098.peg.3676 CDS CYYO01000013.1 86721 84451 -3 - 2271 Beta-glucosidase (EC 3.2.1.21) - none -
fig|6666666.230098.peg.3677 CDS CYYO01000013.1 87584 86733 -2 - 852 endonuclease/exonuclease/phosphatase family protein - none -
fig|6666666.230098.peg.3678 CDS CYYO01000013.1 88978 87647 -1 - 1332 FIG00908315: hypothetical protein - none -
fig|6666666.230098.peg.3679 CDS CYYO01000013.1 90560 89046 -2 - 1515 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.230098.peg.3680 CDS CYYO01000013.1 93585 90580 -3 - 3006 TonB family protein / TonB-dependent receptor Ton and Tol transport systems
fig|6666666.230098.peg.3681 CDS CYYO01000013.1 94911 93760 -3 - 1152 hypothetical protein - none -
fig|6666666.230098.peg.3682 CDS CYYO01000013.1 96126 94930 -3 - 1197 FIG00414347: hypothetical protein - none -
fig|6666666.230098.peg.3683 CDS CYYO01000013.1 97682 96162 -2 - 1521 Choline-sulfatase (EC 3.1.6.6) - none -
fig|6666666.230098.peg.3684 CDS CYYO01000013.1 100426 97775 -1 - 2652 Beta-galactosidase (EC 3.2.1.23) Galactosylceramide and Sulfatide metabolism;
Lactose and Galactose Uptake and Utilization;
Lactose utilization
fig|6666666.230098.peg.3685 CDS CYYO01000013.1 102879 100579 -3 - 2301 Periplasmic beta-glucosidase (EC 3.2.1.21) - none -
fig|6666666.230098.peg.3686 CDS CYYO01000013.1 105716 103038 -2 - 2679 FIG00415464: hypothetical protein - none -
fig|6666666.230098.peg.3687 CDS CYYO01000013.1 107435 105993 -2 - 1443 FIG00415875: hypothetical protein - none -
fig|6666666.230098.peg.3688 CDS CYYO01000013.1 109284 107545 -3 - 1740 Putative carboxy-terminal processing protease (EC 3.4.21.102) - none -
fig|6666666.230098.peg.3689 CDS CYYO01000013.1 110484 109420 -3 - 1065 Ribokinase (EC 2.7.1.15) D-ribose utilization;
Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.230098.peg.3690 CDS CYYO01000013.1 112984 112187 -1 - 798 Inositol-1-monophosphatase (EC 3.1.3.25) - none -
fig|6666666.230098.peg.3691 CDS CYYO01000013.1 113461 112994 -1 - 468 hypothetical protein - none -
fig|6666666.230098.peg.3692 CDS CYYO01000013.1 114305 113703 -2 - 603 putative DNA-binding protein - none -
fig|6666666.230098.peg.3693 CDS CYYO01000013.1 114610 115722 1 + 1113 COG0457: FOG: TPR repeat - none -
fig|6666666.230098.peg.3694 CDS CYYO01000013.1 117118 115754 -1 - 1365 Mobilization protein BmpH - none -
fig|6666666.230098.peg.3695 CDS CYYO01000014.1 993 106 -3 - 888 Sugar phosphate isomerase/epimerase - none -
fig|6666666.230098.peg.3696 CDS CYYO01000014.1 893 1024 2 + 132 hypothetical protein - none -
fig|6666666.230098.peg.3697 CDS CYYO01000014.1 1906 1031 -1 - 876 Probable secreted glycosyl hydrolase - none -
fig|6666666.230098.peg.3698 CDS CYYO01000014.1 3384 1978 -3 - 1407 Myo-inositol 2-dehydrogenase (EC 1.1.1.18) - none -
fig|6666666.230098.peg.3699 CDS CYYO01000014.1 4611 3532 -3 - 1080 Myo-inositol 2-dehydrogenase (EC 1.1.1.18) - none -
fig|6666666.230098.peg.3700 CDS CYYO01000014.1 6873 5035 -3 - 1839 ABC transporter, ATP-binding protein - none -
fig|6666666.230098.peg.3701 CDS CYYO01000014.1 7182 8762 3 + 1581 FIG00414179: hypothetical protein - none -
fig|6666666.230098.peg.3702 CDS CYYO01000014.1 9255 9395 3 + 141 hypothetical protein - none -
fig|6666666.230098.peg.3703 CDS CYYO01000014.1 9367 11310 1 + 1944 FIG00413783: hypothetical protein - none -
fig|6666666.230098.peg.3704 CDS CYYO01000014.1 11432 12055 2 + 624 FIG00408365: hypothetical protein - none -
fig|6666666.230098.peg.3705 CDS CYYO01000014.1 13097 12186 -2 - 912 FIG00416846: hypothetical protein - none -
fig|6666666.230098.peg.3706 CDS CYYO01000014.1 13986 13102 -3 - 885 Beta-1,3-glucosyltransferase LOS core oligosaccharide biosynthesis
fig|6666666.230098.peg.3707 CDS CYYO01000014.1 15120 14092 -3 - 1029 Glycosyl transferase, group 1 CBSS-258594.1.peg.3339
fig|6666666.230098.peg.3708 CDS CYYO01000014.1 16118 15243 -2 - 876 Streptomycin biosynthesis StrF domain protein - none -
fig|6666666.230098.peg.3709 CDS CYYO01000014.1 17414 16131 -2 - 1284 Glycosyltransferase CBSS-258594.1.peg.3339
fig|6666666.230098.peg.3710 CDS CYYO01000014.1 18358 17414 -1 - 945 Putative N-acetylgalactosaminyl-diphosphoundecaprenol glucuronosyltransferase Teichuronic acid biosynthesis
fig|6666666.230098.peg.3711 CDS CYYO01000014.1 19359 18355 -3 - 1005 Glycosyltransferase CBSS-258594.1.peg.3339
fig|6666666.230098.peg.3712 CDS CYYO01000014.1 20461 19451 -1 - 1011 Glycosyl transferase, family 2 - none -
fig|6666666.230098.peg.3713 CDS CYYO01000014.1 21367 20474 -1 - 894 CDP-glycerol: N-acetyl-beta-D-mannosaminyl-1,4-N-acetyl-D-glucosaminyldiphosphoundecaprenyl glycerophosphotransferase Teichoic and lipoteichoic acids biosynthesis
fig|6666666.230098.peg.3714 CDS CYYO01000014.1 21401 21523 2 + 123 hypothetical protein - none -
fig|6666666.230098.peg.3715 CDS CYYO01000014.1 21835 21710 -1 - 126 hypothetical protein - none -
fig|6666666.230098.peg.3716 CDS CYYO01000014.1 21948 21817 -3 - 132 hypothetical protein - none -
fig|6666666.230098.peg.3717 CDS CYYO01000014.1 22037 23614 2 + 1578 Phosphoglycerol transferase MdoB related protein, alkaline phosphatase superfamily - none -
fig|6666666.230098.peg.3718 CDS CYYO01000014.1 23698 24447 1 + 750 FIG00414762: hypothetical protein - none -
fig|6666666.230098.peg.3719 CDS CYYO01000014.1 24484 25065 1 + 582 Phosphoheptose isomerase 1 (EC 5.3.1.-) Capsular heptose biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.230098.peg.3720 CDS CYYO01000014.1 25058 25546 2 + 489 D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase (EC 3.1.1.-) Capsular heptose biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.230098.peg.3721 CDS CYYO01000014.1 25543 26973 1 + 1431 ADP-heptose synthase (EC 2.7.-.-) / D-glycero-beta-D-manno-heptose 7-phosphate kinase LOS core oligosaccharide biosynthesis;
LOS core oligosaccharide biosynthesis
fig|6666666.230098.peg.3722 CDS CYYO01000014.1 27952 26954 -1 - 999 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) LOS core oligosaccharide biosynthesis
fig|6666666.230098.peg.3723 CDS CYYO01000014.1 28261 29178 1 + 918 PUTATIVE SIGNAL PEPTIDE PROTEIN - none -
fig|6666666.230098.peg.3724 CDS CYYO01000014.1 30027 29200 -3 - 828 Lipopolysaccharide cholinephosphotransferase LicD1 (EC 2.7.8.-) - none -
fig|6666666.230098.peg.3725 CDS CYYO01000014.1 30776 30045 -2 - 732 Choline permease LicB - none -
fig|6666666.230098.peg.3726 CDS CYYO01000014.1 31810 30773 -1 - 1038 Histidinol-phosphate aminotransferase (EC 2.6.1.9) Histidine Biosynthesis
fig|6666666.230098.peg.3727 CDS CYYO01000014.1 32959 31814 -1 - 1146 mannosyltransferase - none -
fig|6666666.230098.peg.3728 CDS CYYO01000014.1 33203 33045 -2 - 159 hypothetical protein - none -
fig|6666666.230098.peg.3729 CDS CYYO01000014.1 33589 34632 1 + 1044 Erythronate-4-phosphate dehydrogenase (EC 1.1.1.290) Pyridoxin (Vitamin B6) Biosynthesis
fig|6666666.230098.peg.3730 CDS CYYO01000014.1 34749 36602 3 + 1854 FIG00416859: hypothetical protein - none -
fig|6666666.230098.peg.3731 CDS CYYO01000014.1 37180 36593 -1 - 588 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) 5-FCL-like protein;
De Novo Purine Biosynthesis
fig|6666666.230098.peg.3732 CDS CYYO01000014.1 37330 37566 1 + 237 Acyl carrier protein Fatty Acid Biosynthesis FASII;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria
fig|6666666.230098.peg.3733 CDS CYYO01000014.1 37588 38853 1 + 1266 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179) - none -
fig|6666666.230098.peg.3734 CDS CYYO01000014.1 38989 38864 -1 - 126 hypothetical protein - none -
fig|6666666.230098.peg.3735 CDS CYYO01000014.1 39002 39739 2 + 738 Ribonuclease III (EC 3.1.26.3) RNA processing and degradation, bacterial
fig|6666666.230098.peg.3736 CDS CYYO01000014.1 40708 39698 -1 - 1011 6-phosphofructokinase (EC 2.7.1.11) Glycolysis and Gluconeogenesis
fig|6666666.230098.peg.3737 CDS CYYO01000014.1 40831 42342 1 + 1512 putative auxin-regulated protein - none -
fig|6666666.230098.peg.3738 CDS CYYO01000014.1 43369 42488 -1 - 882 FIG00897142: hypothetical protein - none -
fig|6666666.230098.peg.3739 CDS CYYO01000014.1 44597 43434 -2 - 1164 Mobile element protein - none -
fig|6666666.230098.peg.3740 CDS CYYO01000014.1 44759 46363 2 + 1605 TonB-dependent receptor Ton and Tol transport systems
fig|6666666.230098.peg.3741 CDS CYYO01000014.1 46376 47977 2 + 1602 FIG00897230: hypothetical protein - none -
fig|6666666.230098.peg.3742 CDS CYYO01000014.1 50178 47974 -3 - 2205 Pyrophosphate-energized proton pump (EC 3.6.1.1) Phosphate metabolism
fig|6666666.230098.peg.3743 CDS CYYO01000014.1 50422 52326 1 + 1905 hypothetical protein - none -
fig|6666666.230098.peg.3744 CDS CYYO01000014.1 52740 52420 -3 - 321 PlcB, ORFX, ORFP, ORFB, ORFA, ldh gene - none -
fig|6666666.230098.peg.3745 CDS CYYO01000014.1 54076 52811 -1 - 1266 Cysteine desulfurase (EC 2.8.1.7), SufS subfamily Alanine biosynthesis;
Iron-sulfur cluster assembly;
mnm5U34 biosynthesis bacteria;
tRNA modification Bacteria
fig|6666666.230098.peg.3746 CDS CYYO01000014.1 55442 54099 -2 - 1344 Iron-sulfur cluster assembly protein SufD Iron-sulfur cluster assembly;
tRNA modification Bacteria
fig|6666666.230098.peg.3747 CDS CYYO01000014.1 56215 55460 -1 - 756 Iron-sulfur cluster assembly ATPase protein SufC Iron-sulfur cluster assembly;
tRNA modification Bacteria
fig|6666666.230098.peg.3748 CDS CYYO01000014.1 57714 56260 -3 - 1455 Iron-sulfur cluster assembly protein SufB Iron-sulfur cluster assembly;
tRNA modification Bacteria
fig|6666666.230098.peg.3749 CDS CYYO01000014.1 58275 57763 -3 - 513 Colicin V production protein Colicin V and Bacteriocin Production Cluster
fig|6666666.230098.peg.3750 CDS CYYO01000014.1 61476 58429 -3 - 3048 Translation initiation factor 2 CBSS-138119.3.peg.2719;
CBSS-350688.3.peg.1509;
Inteins;
NusA-TFII Cluster;
Translation initiation factors bacterial;
Universal GTPases
fig|6666666.230098.peg.3751 CDS CYYO01000014.1 62860 61595 -1 - 1266 Transcription termination protein NusA CBSS-350688.3.peg.1509;
NusA-TFII Cluster;
Transcription factors bacterial
fig|6666666.230098.peg.3752 CDS CYYO01000014.1 63332 62865 -2 - 468 FIG000325: clustered with transcription termination protein NusA CBSS-350688.3.peg.1509;
NusA-TFII Cluster;
Transcription factors bacterial
fig|6666666.230098.peg.3753 CDS CYYO01000014.1 66292 63803 -1 - 2490 Beta-glucosidase (EC 3.2.1.21) - none -
fig|6666666.230098.peg.3754 CDS CYYO01000014.1 68753 66429 -2 - 2325 Beta-glucosidase (EC 3.2.1.21) - none -
fig|6666666.230098.peg.3755 CDS CYYO01000014.1 69954 68758 -3 - 1197 Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8) D-Galacturonate and D-Glucuronate Utilization;
Xylose utilization
fig|6666666.230098.peg.3756 CDS CYYO01000014.1 71178 70000 -3 - 1179 Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8) D-Galacturonate and D-Glucuronate Utilization;
Xylose utilization
fig|6666666.230098.peg.3757 CDS CYYO01000014.1 72121 71237 -1 - 885 Endo-1,4-beta-xylanase Z - none -
fig|6666666.230098.peg.3758 CDS CYYO01000014.1 74574 72208 -3 - 2367 Beta-glucosidase (EC 3.2.1.21) - none -
fig|6666666.230098.peg.3759 CDS CYYO01000014.1 76299 74728 -3 - 1572 FIG00411172: hypothetical protein - none -
fig|6666666.230098.peg.3760 CDS CYYO01000014.1 79416 76330 -3 - 3087 SusC, outer membrane protein involved in starch binding Cellulosome
fig|6666666.230098.peg.3761 CDS CYYO01000014.1 81166 79511 -1 - 1656 Carboxylesterase type B - none -
fig|6666666.230098.peg.3762 CDS CYYO01000014.1 81453 85478 3 + 4026 DNA-binding response regulator, AraC family - none -
fig|6666666.230098.peg.3763 CDS CYYO01000014.1 85541 85939 2 + 399 FIG00402719: hypothetical protein - none -
fig|6666666.230098.peg.3764 CDS CYYO01000014.1 86964 86254 -3 - 711 Putative predicted metal-dependent hydrolase Restriction-Modification System
fig|6666666.230098.peg.3765 CDS CYYO01000014.1 87252 88112 3 + 861 FIG00402937: hypothetical protein - none -
fig|6666666.230098.peg.3766 CDS CYYO01000014.1 90597 88261 -3 - 2337 FIG00413484: hypothetical protein - none -
fig|6666666.230098.peg.3767 CDS CYYO01000014.1 91014 90610 -3 - 405 hypothetical protein - none -
fig|6666666.230098.peg.3768 CDS CYYO01000014.1 92812 91169 -1 - 1644 TPR-repeat-containing proteins - none -
fig|6666666.230098.peg.3769 CDS CYYO01000014.1 93610 93128 -1 - 483 FIG00404769: hypothetical protein - none -
fig|6666666.230098.peg.3770 CDS CYYO01000014.1 94109 93600 -2 - 510 RNA polymerase ECF-type sigma factor - none -
fig|6666666.230098.peg.3771 CDS CYYO01000014.1 94940 94170 -2 - 771 Acetylglutamate kinase (EC 2.7.2.8) Arginine Biosynthesis -- gjo;
Arginine Biosynthesis extended
fig|6666666.230098.peg.3772 CDS CYYO01000014.1 96834 94942 -3 - 1893 Biosynthetic arginine decarboxylase (EC 4.1.1.19) Arginine and Ornithine Degradation;
Polyamine Metabolism
fig|6666666.230098.peg.3773 CDS CYYO01000014.1 97497 96970 -3 - 528 Shikimate kinase I (EC 2.7.1.71) Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
fig|6666666.230098.peg.3774 CDS CYYO01000014.1 98162 97560 -2 - 603 Nitroreductase family protein - none -
fig|6666666.230098.peg.3775 CDS CYYO01000014.1 98244 98915 3 + 672 Ribonuclease HI-related protein 3 Ribonuclease H
fig|6666666.230098.peg.3776 CDS CYYO01000015.1 334 1659 1 + 1326 hypothetical protein - none -
fig|6666666.230098.peg.3777 CDS CYYO01000015.1 4904 1644 -2 - 3261 hypothetical protein - none -
fig|6666666.230098.peg.3778 CDS CYYO01000015.1 5580 5140 -3 - 441 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) Murein Hydrolases;
Recycling of Peptidoglycan Amino Acids
fig|6666666.230098.peg.3779 CDS CYYO01000015.1 5758 5633 -1 - 126 hypothetical protein - none -
fig|6666666.230098.peg.3780 CDS CYYO01000015.1 6227 5739 -2 - 489 Putative non-specific DNA-binding protein - none -
fig|6666666.230098.peg.3781 CDS CYYO01000015.1 7276 6413 -1 - 864 FIG00403097: hypothetical protein - none -
fig|6666666.230098.peg.3782 CDS CYYO01000015.1 7632 7324 -3 - 309 hypothetical protein - none -
fig|6666666.230098.peg.3783 CDS CYYO01000015.1 7883 7740 -2 - 144 hypothetical protein - none -
fig|6666666.230098.peg.3784 CDS CYYO01000015.1 8064 8786 3 + 723 FIG00409286: hypothetical protein - none -
fig|6666666.230098.peg.3785 CDS CYYO01000015.1 9017 10888 2 + 1872 Two-component system sensor histidine kinase - none -
fig|6666666.230098.peg.3786 CDS CYYO01000015.1 12285 10993 -3 - 1293 S-adenosylmethionine synthetase (EC 2.5.1.6) Methionine Biosynthesis;
Methionine Degradation
fig|6666666.230098.peg.3787 CDS CYYO01000015.1 13063 12587 -1 - 477 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) Folate Biosynthesis;
Folate biosynthesis cluster
fig|6666666.230098.peg.3788 CDS CYYO01000015.1 14124 13066 -3 - 1059 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) CBSS-211586.1.peg.2832;
Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.230098.peg.3789 CDS CYYO01000015.1 14948 14241 -2 - 708 tRNA pseudouridine synthase B (EC 4.2.1.70) CBSS-138119.3.peg.2719;
CBSS-350688.3.peg.1509;
RNA pseudouridine syntheses;
Riboflavin, FMN and FAD metabolism in plants;
tRNA modification Bacteria;
tRNA processing
fig|6666666.230098.peg.3790 CDS CYYO01000015.1 15855 15064 -3 - 792 Undecaprenyl-diphosphatase (EC 3.6.1.27) - none -
fig|6666666.230098.peg.3791 CDS CYYO01000015.1 16251 16012 -3 - 240 FIG00936924: hypothetical protein - none -
fig|6666666.230098.peg.3792 CDS CYYO01000015.1 17210 16335 -2 - 876 Cell division protein FtsX Bacterial Cell Division
fig|6666666.230098.peg.3793 CDS CYYO01000015.1 18199 17300 -1 - 900 3-demethylubiquinone-9 3-methyltransferase (EC 2.1.1.64) - none -
fig|6666666.230098.peg.3794 CDS CYYO01000015.1 18572 19075 2 + 504 FIG00410772: hypothetical protein - none -
fig|6666666.230098.peg.3795 CDS CYYO01000015.1 20551 19178 -1 - 1374 tRNA-i(6)A37 methylthiotransferase Methylthiotransferases;
tRNA-methylthiotransferase containing cluster;
tRNA modification Bacteria;
tRNA processing
fig|6666666.230098.peg.3796 CDS CYYO01000015.1 20945 21325 2 + 381 FIG00402837: hypothetical protein - none -
fig|6666666.230098.peg.3797 CDS CYYO01000015.1 21399 22895 3 + 1497 Acetyl-CoA hydrolase (EC 3.1.2.1) - none -
fig|6666666.230098.peg.3798 CDS CYYO01000015.1 24734 23328 -2 - 1407 Outer membrane protein oprM - none -
fig|6666666.230098.peg.3799 CDS CYYO01000015.1 27943 24764 -1 - 3180 RND efflux system, inner membrane transporter CmeB Multidrug Resistance Efflux Pumps
fig|6666666.230098.peg.3800 CDS CYYO01000015.1 29150 27981 -2 - 1170 Multidrug resistance protein - none -
fig|6666666.230098.peg.3801 CDS CYYO01000015.1 29310 30221 3 + 912 Transcriptional regulator, AraC family - none -
fig|6666666.230098.peg.3802 CDS CYYO01000015.1 31812 30319 -3 - 1494 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) Metallocarboxypeptidases (EC 3.4.17.-);
Murein Hydrolases;
Peptidoglycan Biosynthesis
fig|6666666.230098.peg.3803 CDS CYYO01000015.1 31990 33207 1 + 1218 peptidase M1, membrane alanine aminopeptidase - none -
fig|6666666.230098.peg.3804 CDS CYYO01000015.1 33638 33216 -2 - 423 hypothetical protein - none -
fig|6666666.230098.peg.3805 CDS CYYO01000015.1 35031 33673 -3 - 1359 Dihydrolipoamide dehydrogenase (EC 1.8.1.4) 5-FCL-like protein;
TCA Cycle
fig|6666666.230098.peg.3806 CDS CYYO01000015.1 35194 36168 1 + 975 FIG00403751: hypothetical protein - none -
fig|6666666.230098.peg.3807 CDS CYYO01000015.1 36497 36165 -2 - 333 hypothetical protein - none -
fig|6666666.230098.peg.3808 CDS CYYO01000015.1 37602 36523 -3 - 1080 FIG00410465: hypothetical protein - none -
fig|6666666.230098.peg.3809 CDS CYYO01000015.1 37845 39161 3 + 1317 FIG00407157: hypothetical protein - none -
fig|6666666.230098.peg.3810 CDS CYYO01000015.1 39119 40369 2 + 1251 putative outer membrane protein - none -
fig|6666666.230098.peg.3811 CDS CYYO01000015.1 41269 40523 -1 - 747 Two-component system response regulator - none -
fig|6666666.230098.peg.3812 CDS CYYO01000015.1 41472 42077 3 + 606 hypothetical protein - none -
fig|6666666.230098.peg.3813 CDS CYYO01000015.1 42503 42111 -2 - 393 FIG00413241: hypothetical protein - none -
fig|6666666.230098.peg.3814 CDS CYYO01000015.1 42911 42537 -2 - 375 FIG00406980: hypothetical protein - none -
fig|6666666.230098.peg.3815 CDS CYYO01000015.1 43020 42880 -3 - 141 hypothetical protein - none -
fig|6666666.230098.peg.3816 CDS CYYO01000015.1 43101 45050 3 + 1950 FIG00409736: hypothetical protein - none -
fig|6666666.230098.peg.3817 CDS CYYO01000015.1 45127 46698 1 + 1572 L-aspartate oxidase (EC 1.4.3.16) Mycobacterium virulence operon possibly involved in quinolinate biosynthesis;
NAD and NADP cofactor biosynthesis global
fig|6666666.230098.peg.3818 CDS CYYO01000015.1 46717 48465 1 + 1749 FIG00412221: hypothetical protein - none -
fig|6666666.230098.peg.3819 CDS CYYO01000015.1 48496 50679 1 + 2184 FIG00412200: hypothetical protein - none -
fig|6666666.230098.peg.3820 CDS CYYO01000015.1 50816 50676 -2 - 141 hypothetical protein - none -
fig|6666666.230098.peg.3821 CDS CYYO01000015.1 51551 50973 -2 - 579 Rubrerythrin Oxidative stress;
Rubrerythrin
fig|6666666.230098.peg.3822 CDS CYYO01000015.1 51939 53555 3 + 1617 Sulfate permease Cysteine Biosynthesis
fig|6666666.230098.peg.3823 CDS CYYO01000015.1 53563 54402 1 + 840 DNA/RNA endonuclease G - none -
fig|6666666.230098.peg.3824 CDS CYYO01000015.1 54917 54408 -2 - 510 FIG00403759: hypothetical protein - none -
fig|6666666.230098.peg.3825 CDS CYYO01000015.1 55701 54928 -3 - 774 Fe-S OXIDOREDUCTASE (1.8.-.-) - none -
fig|6666666.230098.peg.3826 CDS CYYO01000015.1 56109 55963 -3 - 147 hypothetical protein - none -
fig|6666666.230098.peg.3827 CDS CYYO01000015.1 56135 56395 2 + 261 hypothetical protein - none -
fig|6666666.230098.peg.3828 CDS CYYO01000015.1 56427 56591 3 + 165 Transcriptional regulator, Cro/CI family - none -
fig|6666666.230098.peg.3829 CDS CYYO01000015.1 58717 56672 -1 - 2046 FIG00898434: hypothetical protein - none -
fig|6666666.230098.peg.3830 CDS CYYO01000015.1 58866 59447 3 + 582 FIG00896812: hypothetical protein - none -
fig|6666666.230098.peg.3831 CDS CYYO01000015.1 60182 59442 -2 - 741 FIG00413590: hypothetical protein - none -
fig|6666666.230098.peg.3832 CDS CYYO01000015.1 61274 60312 -2 - 963 Protein of unknown function DUF161 - none -
fig|6666666.230098.peg.3833 CDS CYYO01000015.1 62125 61598 -1 - 528 23S rRNA methyltransferase (EC 2.1.1.-) - none -
fig|6666666.230098.peg.3834 CDS CYYO01000015.1 62590 63528 1 + 939 Quinolinate synthetase (EC 2.5.1.72) Mycobacterium virulence operon possibly involved in quinolinate biosynthesis;
NAD and NADP cofactor biosynthesis global
fig|6666666.230098.peg.3835 CDS CYYO01000015.1 64208 63630 -2 - 579 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) Heat shock dnaK gene cluster extended;
Housecleaning nucleoside triphosphate pyrophosphatases
fig|6666666.230098.peg.3836 CDS CYYO01000015.1 65148 64246 -3 - 903 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) Heat shock dnaK gene cluster extended;
Housecleaning nucleoside triphosphate pyrophosphatases
fig|6666666.230098.peg.3837 CDS CYYO01000015.1 67991 65154 -2 - 2838 Leucyl-tRNA synthetase (EC 6.1.1.4) tRNA aminoacylation, Leu
fig|6666666.230098.peg.3838 CDS CYYO01000015.1 68356 68234 -1 - 123 hypothetical protein - none -
fig|6666666.230098.peg.3839 CDS CYYO01000015.1 68477 69418 2 + 942 Permease of the drug/metabolite transporter (DMT) superfamily Queuosine-Archaeosine Biosynthesis
fig|6666666.230098.peg.3840 CDS CYYO01000015.1 70922 69489 -2 - 1434 FIG00413844: hypothetical protein - none -
fig|6666666.230098.peg.3841 CDS CYYO01000015.1 71045 70929 -2 - 117 Maltodextrin glucosidase (EC 3.2.1.20) Maltose and Maltodextrin Utilization
fig|6666666.230098.peg.3842 CDS CYYO01000016.1 516 1463 3 + 948 Mobile element protein - none -
fig|6666666.230098.peg.3843 CDS CYYO01000016.1 1906 4890 1 + 2985 hypothetical protein - none -
fig|6666666.230098.peg.3844 CDS CYYO01000016.1 5104 4991 -1 - 114 hypothetical protein - none -
fig|6666666.230098.peg.3845 CDS CYYO01000016.1 5348 7813 2 + 2466 Helicase PriA essential for oriC/DnaA-independent DNA replication Conserved gene cluster associated with Met-tRNA formyltransferase
fig|6666666.230098.peg.3846 CDS CYYO01000016.1 7835 8296 2 + 462 Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48) LMPTP YfkJ cluster
fig|6666666.230098.peg.3847 CDS CYYO01000016.1 10383 8293 -3 - 2091 putative helicase - none -
fig|6666666.230098.peg.3848 CDS CYYO01000016.1 10634 10780 2 + 147 hypothetical protein - none -
fig|6666666.230098.peg.3849 CDS CYYO01000016.1 10784 11407 2 + 624 putative DNA-binding protein - none -
fig|6666666.230098.peg.3850 CDS CYYO01000016.1 11430 11543 3 + 114 hypothetical protein - none -
fig|6666666.230098.peg.3851 CDS CYYO01000016.1 14246 11625 -2 - 2622 Phage tail fiber protein Phage tail fiber proteins
fig|6666666.230098.peg.3852 CDS CYYO01000016.1 14846 14682 -2 - 165 Mobile element protein - none -
fig|6666666.230098.peg.3853 CDS CYYO01000016.1 15199 15345 1 + 147 hypothetical protein - none -
fig|6666666.230098.peg.3854 CDS CYYO01000016.1 15312 18140 3 + 2829 hypothetical protein - none -
fig|6666666.230098.peg.3855 CDS CYYO01000016.1 18339 18812 3 + 474 hypothetical protein - none -
fig|6666666.230098.peg.3856 CDS CYYO01000016.1 19452 18886 -3 - 567 FIG00937641: hypothetical protein - none -
fig|6666666.230098.peg.3857 CDS CYYO01000016.1 19608 20105 3 + 498 FIG01201438: hypothetical protein - none -
fig|6666666.230098.peg.3858 CDS CYYO01000016.1 20404 21114 1 + 711 Nitric oxide-dependent regulator DnrN or NorA Iron-sulfur cluster assembly;
Nitrosative stress
fig|6666666.230098.peg.3859 CDS CYYO01000016.1 21111 21470 3 + 360 probable uroporphyrin-III c-methyltransferase (EC 2.1.1.107) - none -
fig|6666666.230098.peg.3860 CDS CYYO01000016.1 23976 21541 -3 - 2436 ATP-dependent DNA helicase RecQ DNA repair, bacterial RecFOR pathway
fig|6666666.230098.peg.3861 CDS CYYO01000016.1 24331 24110 -1 - 222 FIG00935798: hypothetical protein - none -
fig|6666666.230098.peg.3862 CDS CYYO01000016.1 24956 24402 -2 - 555 ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17) - none -
fig|6666666.230098.peg.3863 CDS CYYO01000016.1 25693 25061 -1 - 633 FIG00412153: hypothetical protein - none -
fig|6666666.230098.peg.3864 CDS CYYO01000016.1 27194 25698 -2 - 1497 Beta-lactamase class C and other penicillin binding proteins Beta-lactamase
fig|6666666.230098.peg.3865 CDS CYYO01000016.1 29753 27291 -2 - 2463 putative large secreted protein - none -
fig|6666666.230098.peg.3866 CDS CYYO01000016.1 29744 29875 2 + 132 hypothetical protein - none -
fig|6666666.230098.peg.3867 CDS CYYO01000016.1 32163 29950 -3 - 2214 Beta-glucosidase (EC 3.2.1.21) - none -
fig|6666666.230098.peg.3868 CDS CYYO01000016.1 34793 32211 -2 - 2583 Beta-galactosidase (EC 3.2.1.23) Galactosylceramide and Sulfatide metabolism;
Lactose and Galactose Uptake and Utilization;
Lactose utilization
fig|6666666.230098.peg.3869 CDS CYYO01000016.1 37839 34957 -3 - 2883 Alpha-xylosidase (EC 3.2.1.-) Xylose utilization
fig|6666666.230098.peg.3870 CDS CYYO01000016.1 42057 37978 -3 - 4080 Two-component system sensor histidine kinase/response regulator, hybrid - none -
fig|6666666.230098.peg.3871 CDS CYYO01000016.1 44056 42278 -1 - 1779 Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8) D-Galacturonate and D-Glucuronate Utilization;
Xylose utilization
fig|6666666.230098.peg.3872 CDS CYYO01000016.1 44080 44220 1 + 141 hypothetical protein - none -
fig|6666666.230098.peg.3873 CDS CYYO01000016.1 44324 45880 2 + 1557 Beta-xylosidase (EC 3.2.1.37) Xylose utilization
fig|6666666.230098.peg.3874 CDS CYYO01000016.1 48896 46275 -2 - 2622 FIG01287877: hypothetical protein - none -
fig|6666666.230098.peg.3875 CDS CYYO01000016.1 50875 48905 -1 - 1971 FIG00412438: hypothetical protein - none -
fig|6666666.230098.peg.3876 CDS CYYO01000016.1 52596 50917 -3 - 1680 SusD, outer membrane protein Cellulosome
fig|6666666.230098.peg.3877 CDS CYYO01000016.1 55804 52610 -1 - 3195 SusC, outer membrane protein involved in starch binding Cellulosome
fig|6666666.230098.peg.3878 CDS CYYO01000016.1 56152 57111 1 + 960 FIG00414698: hypothetical protein - none -
fig|6666666.230098.peg.3879 CDS CYYO01000016.1 58321 57122 -1 - 1200 Two-component system sensor histidine kinase - none -
fig|6666666.230098.peg.3880 CDS CYYO01000016.1 58328 58465 2 + 138 hypothetical protein - none -
fig|6666666.230098.peg.3881 CDS CYYO01000016.1 59597 58740 -2 - 858 FIG00416635: hypothetical protein - none -
fig|6666666.230098.peg.3882 CDS CYYO01000016.1 59866 60951 1 + 1086 Mannose-1-phosphate guanylyltransferase (GDP) (EC 2.7.7.22) Mannose Metabolism
fig|6666666.230098.peg.3883 CDS CYYO01000016.1 61444 61052 -1 - 393 HIT family protein - none -
fig|6666666.230098.peg.3884 CDS CYYO01000016.1 61958 61494 -2 - 465 Transcription elongation factor GreA Transcription factors bacterial
fig|6666666.230098.peg.3885 CDS CYYO01000016.1 63282 62149 -3 - 1134 FIG00897677: hypothetical protein - none -
fig|6666666.230098.peg.3886 CDS CYYO01000016.1 63508 65652 1 + 2145 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) Bacterial RNA-metabolizing Zn-dependent hydrolases;
CBSS-1806.1.peg.3045;
CBSS-350688.3.peg.1509
fig|6666666.230098.peg.3887 CDS CYYO01000016.1 65686 65811 1 + 126 hypothetical protein - none -
fig|6666666.230098.peg.3888 CDS CYYO01000016.1 65852 66397 2 + 546 RNA polymerase ECF-type sigma factor - none -
fig|6666666.230098.peg.3889 CDS CYYO01000016.1 66494 67429 2 + 936 putative anti-sigma factor - none -
fig|6666666.230098.peg.3890 CDS CYYO01000016.1 67595 69319 2 + 1725 SusC, outer membrane protein involved in starch binding Cellulosome
fig|6666666.230098.peg.3891 CDS CYYO01000017.1 1519 197 -1 - 1323 tetracycline resistance element regulator RteB - Bacteroides thetaiotaomicron - none -
fig|6666666.230098.peg.3892 CDS CYYO01000017.1 3830 1512 -2 - 2319 FIG00939874: hypothetical protein - none -
fig|6666666.230098.peg.3893 CDS CYYO01000017.1 5755 3830 -1 - 1926 Tetracycline resistance protein TetQ Tetracycline resistance, ribosome protection type;
Tetracycline resistance, ribosome protection type, too;
Translation elongation factor G family
fig|6666666.230098.peg.3894 CDS CYYO01000017.1 12229 6413 -1 - 5817 putative DNA methylase - none -
fig|6666666.230098.peg.3895 CDS CYYO01000017.1 12416 12219 -2 - 198 FIG00936811: hypothetical protein - none -
fig|6666666.230098.peg.3896 CDS CYYO01000017.1 14675 12873 -2 - 1803 DNA topoisomerase III, Bacteroidales-type (EC 5.99.1.2) DNA topoisomerases, Type I, ATP-independent
fig|6666666.230098.peg.3897 CDS CYYO01000017.1 15779 14754 -2 - 1026 Mobile element protein - none -
fig|6666666.230098.peg.3898 CDS CYYO01000017.1 16755 15769 -3 - 987 putative integrase/recombinase - none -
fig|6666666.230098.peg.3899 CDS CYYO01000017.1 18055 16760 -1 - 1296 Mobile element protein - none -
fig|6666666.230098.peg.3900 CDS CYYO01000017.1 18494 18141 -2 - 354 DNA topoisomerase III, Bacteroidales-type (EC 5.99.1.2) DNA topoisomerases, Type I, ATP-independent
fig|6666666.230098.peg.3901 CDS CYYO01000017.1 19331 18555 -2 - 777 FIG00937566: hypothetical protein - none -
fig|6666666.230098.peg.3902 CDS CYYO01000017.1 20542 20192 -1 - 351 FIG00938987: hypothetical protein - none -
fig|6666666.230098.peg.3903 CDS CYYO01000017.1 20908 20546 -1 - 363 FIG00936922: hypothetical protein - none -
fig|6666666.230098.peg.3904 CDS CYYO01000017.1 21110 21409 2 + 300 FIG00938698: hypothetical protein - none -
fig|6666666.230098.peg.3905 CDS CYYO01000017.1 21441 21746 3 + 306 FIG00407580: hypothetical protein - none -
fig|6666666.230098.peg.3906 CDS CYYO01000017.1 22186 21824 -1 - 363 FIG00417797: hypothetical protein - none -
fig|6666666.230098.peg.3907 CDS CYYO01000017.1 23433 22198 -3 - 1236 Mobile element protein - none -
fig|6666666.230098.peg.3908 CDS CYYO01000017.1 23792 24517 2 + 726 FIG00652438: hypothetical protein - none -
fig|6666666.230098.peg.3909 CDS CYYO01000017.1 24643 25218 1 + 576 FIG00417994: hypothetical protein - none -
fig|6666666.230098.peg.3910 CDS CYYO01000017.1 26231 25398 -2 - 834 Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) DNA Repair Base Excision
fig|6666666.230098.peg.3911 CDS CYYO01000017.1 27405 26311 -3 - 1095 Outer membrane protein assembly factor YaeT precursor Llipid A biosynthesis cluster
fig|6666666.230098.peg.3912 CDS CYYO01000017.1 27589 28389 1 + 801 Ribokinase (EC 2.7.1.15) D-ribose utilization;
Deoxyribose and Deoxynucleoside Catabolism
fig|6666666.230098.peg.3913 CDS CYYO01000017.1 30068 28407 -2 - 1662 Hydroxylamine reductase (EC 1.7.-.-) Nitrosative stress
fig|6666666.230098.peg.3914 CDS CYYO01000017.1 30240 30878 3 + 639 Hcp transcriptional regulator HcpR (Crp/Fnr family) Nitrosative stress
fig|6666666.230098.peg.3915 CDS CYYO01000017.1 30931 31620 1 + 690 Hcp transcriptional regulator HcpR (Crp/Fnr family) Nitrosative stress
fig|6666666.230098.peg.3916 CDS CYYO01000017.1 32902 31622 -1 - 1281 FIG00897187: hypothetical protein - none -
fig|6666666.230098.peg.3917 CDS CYYO01000017.1 33701 32910 -2 - 792 Cytochrome c biogenesis protein CcsA - none -
fig|6666666.230098.peg.3918 CDS CYYO01000017.1 34942 33698 -1 - 1245 FIG00896358: hypothetical protein - none -
fig|6666666.230098.peg.3919 CDS CYYO01000017.1 36455 34974 -2 - 1482 Cytochrome c552 precursor (EC 1.7.2.2) Nitrate and nitrite ammonification;
Soluble cytochromes and functionally related electron carriers
fig|6666666.230098.peg.3920 CDS CYYO01000017.1 37067 36477 -2 - 591 Cytochrome c nitrite reductase, small subunit NrfH Nitrate and nitrite ammonification
fig|6666666.230098.peg.3921 CDS CYYO01000017.1 38458 37265 -1 - 1194 Iron-uptake factor PiuB - none -
fig|6666666.230098.peg.3922 CDS CYYO01000017.1 39869 38466 -2 - 1404 FIG00897421: hypothetical protein - none -
fig|6666666.230098.peg.3923 CDS CYYO01000017.1 42219 39913 -3 - 2307 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins Ton and Tol transport systems
fig|6666666.230098.peg.3924 CDS CYYO01000017.1 42238 42387 1 + 150 hypothetical protein - none -
fig|6666666.230098.peg.3925 CDS CYYO01000017.1 42365 42484 2 + 120 hypothetical protein - none -
fig|6666666.230098.peg.3926 CDS CYYO01000017.1 42584 43864 2 + 1281 Enolase (EC 4.2.1.11) Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis;
Serine-glyoxylate cycle
fig|6666666.230098.peg.3927 CDS CYYO01000017.1 44681 44220 -2 - 462 NADPH dependent preQ0 reductase (EC 1.7.1.13) - none -
fig|6666666.230098.peg.3928 CDS CYYO01000017.1 45363 44707 -3 - 657 Queuosine Biosynthesis QueC ATPase Queuosine-Archaeosine Biosynthesis;
tRNA modification Bacteria
fig|6666666.230098.peg.3929 CDS CYYO01000017.1 46157 45477 -2 - 681 Putative preQ0 transporter Queuosine-Archaeosine Biosynthesis
fig|6666666.230098.peg.3930 CDS CYYO01000018.1 2170 740 -1 - 1431 Fucose permease - none -
fig|6666666.230098.peg.3931 CDS CYYO01000018.1 3419 2196 -2 - 1224 FIG00412973: hypothetical protein - none -
fig|6666666.230098.peg.3932 CDS CYYO01000018.1 5221 3434 -1 - 1788 L-fucose isomerase (EC 5.3.1.25) - none -
fig|6666666.230098.peg.3933 CDS CYYO01000018.1 6303 5299 -3 - 1005 FIG00417592: hypothetical protein - none -
fig|6666666.230098.peg.3934 CDS CYYO01000018.1 6534 7598 3 + 1065 FIG00410851: hypothetical protein - none -
fig|6666666.230098.peg.3935 CDS CYYO01000018.1 7919 8866 2 + 948 Ribulokinase (EC 2.7.1.16) L-Arabinose utilization
fig|6666666.230098.peg.3936 CDS CYYO01000018.1 8931 10076 3 + 1146 FIG00411978: hypothetical protein - none -
fig|6666666.230098.peg.3937 CDS CYYO01000018.1 10140 13349 3 + 3210 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.230098.peg.3938 CDS CYYO01000018.1 13369 15204 1 + 1836 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.230098.peg.3939 CDS CYYO01000018.1 15229 15642 1 + 414 FOG: Ankyrin repeat - none -
fig|6666666.230098.peg.3940 CDS CYYO01000018.1 15786 17192 3 + 1407 FIG00413844: hypothetical protein - none -
fig|6666666.230098.peg.3941 CDS CYYO01000018.1 17251 19311 1 + 2061 FIG00415226: hypothetical protein - none -
fig|6666666.230098.peg.3942 CDS CYYO01000018.1 19339 22317 1 + 2979 FIG00405611: hypothetical protein - none -
fig|6666666.230098.peg.3943 CDS CYYO01000019.1 996 1844 3 + 849 Ferredoxin Soluble cytochromes and functionally related electron carriers
fig|6666666.230098.peg.3944 CDS CYYO01000019.1 3116 1848 -2 - 1269 tRNA(Ile)-lysidine synthetase (EC 6.3.4.19) Cell division-ribosomal stress proteins cluster;
Folate biosynthesis cluster;
tRNA modification Bacteria;
tRNA processing
fig|6666666.230098.peg.3945 CDS CYYO01000019.1 3463 5934 1 + 2472 Ferrous iron transport protein B - none -
fig|6666666.230098.peg.3946 CDS CYYO01000019.1 5931 6149 3 + 219 hypothetical protein - none -
fig|6666666.230098.peg.3947 CDS CYYO01000019.1 6410 6955 2 + 546 AhpC/TSA family protein - none -
fig|6666666.230098.peg.3948 CDS CYYO01000019.1 7767 7030 -3 - 738 putative methyltransferase - none -
fig|6666666.230098.peg.3949 CDS CYYO01000019.1 7928 7764 -2 - 165 FIG00404257: hypothetical protein - none -
fig|6666666.230098.peg.3950 CDS CYYO01000019.1 8356 7979 -1 - 378 Lactoylglutathione lyase (EC 4.4.1.5) Glutathione: Non-redox reactions;
Methylglyoxal Metabolism
fig|6666666.230098.peg.3951 CDS CYYO01000019.1 9551 8406 -2 - 1146 FIG00407312: hypothetical protein - none -
fig|6666666.230098.peg.3952 CDS CYYO01000019.1 10325 9591 -2 - 735 Metal dependent hydrolase (EC 3.-.-.-) - none -
fig|6666666.230098.peg.3953 CDS CYYO01000019.1 11112 10408 -3 - 705 Pirin - none -
fig|6666666.230098.peg.3954 CDS CYYO01000019.1 12213 11212 -3 - 1002 D-lactate dehydrogenase (EC 1.1.1.28) Fermentations: Lactate;
Fermentations: Mixed acid
fig|6666666.230098.peg.3955 CDS CYYO01000019.1 12449 13774 2 + 1326 putative outer membrane protein precursor - none -
fig|6666666.230098.peg.3956 CDS CYYO01000019.1 15114 13855 -3 - 1260 FIG00404901: hypothetical protein - none -
fig|6666666.230098.peg.3957 CDS CYYO01000019.1 16439 15312 -2 - 1128 Chitinase (EC 3.2.1.14) - none -
fig|6666666.230098.peg.3958 CDS CYYO01000019.1 17387 16452 -2 - 936 FIG00414000: hypothetical protein - none -
fig|6666666.230098.peg.3959 CDS CYYO01000019.1 19205 17415 -2 - 1791 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.230098.peg.3960 CDS CYYO01000019.1 22454 19221 -2 - 3234 SusC, outer membrane protein involved in starch binding Cellulosome
fig|6666666.230098.peg.3961 CDS CYYO01000020.1 225 97 -3 - 129 Mobile element protein - none -
fig|6666666.230098.peg.3962 CDS CYYO01000020.1 1538 1359 -2 - 180 hypothetical protein - none -
fig|6666666.230098.peg.3963 CDS CYYO01000020.1 2622 1495 -3 - 1128 hypothetical protein - none -
fig|6666666.230098.peg.3964 CDS CYYO01000020.1 3128 2787 -2 - 342 hypothetical protein - none -
fig|6666666.230098.peg.3965 CDS CYYO01000020.1 6488 3219 -2 - 3270 putative cell surface protein - none -
fig|6666666.230098.peg.3966 CDS CYYO01000020.1 7787 7611 -2 - 177 Mobile element protein - none -
fig|6666666.230098.peg.3967 CDS CYYO01000020.1 8181 7996 -3 - 186 hypothetical protein - none -
fig|6666666.230098.peg.3968 CDS CYYO01000020.1 8245 9183 1 + 939 hypothetical protein - none -
fig|6666666.230098.peg.3969 CDS CYYO01000020.1 10153 9212 -1 - 942 HipA protein Persister Cells
fig|6666666.230098.peg.3970 CDS CYYO01000020.1 10485 10156 -3 - 330 FIG00406133: hypothetical protein - none -
fig|6666666.230098.peg.3971 CDS CYYO01000020.1 10706 10482 -2 - 225 transcriptional regulator, XRE family - none -
fig|6666666.230098.peg.3972 CDS CYYO01000020.1 11559 11164 -3 - 396 hypothetical protein - none -
fig|6666666.230098.peg.3973 CDS CYYO01000020.1 14741 11589 -2 - 3153 putative cell surface protein - none -
fig|6666666.230098.peg.3974 CDS CYYO01000020.1 15681 15178 -3 - 504 Mobile element protein - none -
fig|6666666.230098.peg.3975 CDS CYYO01000021.1 215 337 2 + 123 hypothetical protein - none -
fig|6666666.230098.peg.3976 CDS CYYO01000021.1 2144 777 -2 - 1368 hypothetical protein - none -
fig|6666666.230098.peg.3977 CDS CYYO01000021.1 2648 2517 -2 - 132 hypothetical protein - none -
fig|6666666.230098.peg.3978 CDS CYYO01000021.1 5192 3900 -2 - 1293 Mobile element protein - none -
fig|6666666.230098.peg.3979 CDS CYYO01000021.1 5322 5444 3 + 123 hypothetical protein - none -
fig|6666666.230098.peg.3980 CDS CYYO01000021.1 6866 5817 -2 - 1050 Thiamine-monophosphate kinase (EC 2.7.4.16) 5-FCL-like protein;
Riboflavin synthesis cluster;
Thiamin biosynthesis
fig|6666666.230098.peg.3981 CDS CYYO01000021.1 7637 6873 -2 - 765 Purine nucleoside phosphorylase (EC 2.4.2.1) Adenosyl nucleosidases;
Deoxyribose and Deoxynucleoside Catabolism;
Purine conversions
fig|6666666.230098.peg.3982 CDS CYYO01000021.1 8751 7621 -3 - 1131 Tetraacyldisaccharide 4@1-kinase (EC 2.7.1.130) - none -
fig|6666666.230098.peg.3983 CDS CYYO01000021.1 10521 8752 -3 - 1770 Protease IV - none -
fig|6666666.230098.peg.3984 CDS CYYO01000022.1 1068 190 -3 - 879 FIG00414252: hypothetical protein - none -
fig|6666666.230098.peg.3985 CDS CYYO01000022.1 2933 1089 -2 - 1845 putative outer membrane protein, probably involved in nutrient binding - none -
fig|6666666.230098.peg.3986 CDS CYYO01000022.1 6114 3028 -3 - 3087 TonB family protein / TonB-dependent receptor Ton and Tol transport systems
fig|6666666.230098.peg.3987 CDS CYYO01000022.1 7310 6294 -2 - 1017 FIG00414347: hypothetical protein - none -
fig|6666666.230098.peg.3988 CDS CYYO01000022.1 7311 7460 3 + 150 hypothetical protein - none -
fig|6666666.230098.peg.3989 CDS CYYO01000022.1 8898 7519 -3 - 1380 FIG01093382: hypothetical protein - none -
fig|6666666.230098.peg.3990 CDS CYYO01000023.1 1000 110 -1 - 891 FIG00408816: hypothetical protein - none -
fig|6666666.230098.peg.3991 CDS CYYO01000023.1 1904 1014 -2 - 891 FIG00896374: hypothetical protein - none -
fig|6666666.230098.peg.3992 CDS CYYO01000023.1 2656 2453 -1 - 204 hypothetical protein - none -
fig|6666666.230098.peg.3993 CDS CYYO01000023.1 2862 4001 3 + 1140 Phage integrase precursor - none -
fig|6666666.230098.peg.3994 CDS CYYO01000023.1 4151 4282 2 + 132 hypothetical protein - none -
fig|6666666.230098.peg.3995 CDS CYYO01000023.1 4479 5591 3 + 1113 FIG00896374: hypothetical protein - none -
fig|6666666.230098.peg.3996 CDS CYYO01000023.1 5605 6483 1 + 879 FIG00408816: hypothetical protein - none -
fig|6666666.230098.peg.3997 CDS CYYO01000023.1 6524 7663 2 + 1140 Major outer membrane protein OmpA - none -
fig|6666666.230098.peg.3998 CDS CYYO01000023.1 7791 8543 3 + 753 FIG00897943: hypothetical protein - none -
fig|6666666.230098.peg.3999 CDS CYYO01000024.1 3552 1978 -3 - 1575 RagB/SusD domain protein - none -
fig|6666666.230098.peg.4000 CDS CYYO01000024.1 6543 3571 -3 - 2973 SusC, outer membrane protein involved in starch binding Cellulosome
fig|6666666.230098.peg.4001 CDS CYYO01000024.1 7773 6598 -3 - 1176 FIG01197961: hypothetical protein - none -
fig|6666666.230098.peg.4002 CDS CYYO01000024.1 8051 7803 -2 - 249 Ribulokinase (EC 2.7.1.16) L-Arabinose utilization
fig|6666666.230098.peg.4003 CDS CYYO01000025.1 242 1492 2 + 1251 Mobile element protein - none -
fig|6666666.230098.peg.4004 CDS CYYO01000025.1 1885 2076 1 + 192 hypothetical protein - none -
fig|6666666.230098.peg.4005 CDS CYYO01000025.1 2184 2702 3 + 519 Mobile element protein - none -
fig|6666666.230098.peg.4006 CDS CYYO01000025.1 3363 3500 3 + 138 Mobile element protein - none -
fig|6666666.230098.peg.4007 CDS CYYO01000025.1 3577 5100 1 + 1524 Mobile element protein - none -
fig|6666666.230098.peg.4008 CDS CYYO01000025.1 5680 5552 -1 - 129 hypothetical protein - none -
fig|6666666.230098.peg.4009 CDS CYYO01000026.1 159 626 3 + 468 hypothetical protein - none -
fig|6666666.230098.peg.4010 CDS CYYO01000026.1 895 1167 1 + 273 hypothetical protein - none -
fig|6666666.230098.peg.4011 CDS CYYO01000026.1 1320 2585 3 + 1266 Mobile element protein - none -
fig|6666666.230098.peg.4012 CDS CYYO01000026.1 2817 2683 -3 - 135 hypothetical protein - none -
fig|6666666.230098.peg.4013 CDS CYYO01000026.1 2792 2905 2 + 114 hypothetical protein - none -
fig|6666666.230098.peg.4014 CDS CYYO01000026.1 2976 4190 3 + 1215 transposase - none -
fig|6666666.230098.peg.4015 CDS CYYO01000026.1 4482 5039 3 + 558 hypothetical protein - none -
fig|6666666.230098.peg.4016 CDS CYYO01000027.1 501 82 -3 - 420 putative cell wall-associated protein precursor - none -
fig|6666666.230098.peg.4017 CDS CYYO01000027.1 976 608 -1 - 369 hypothetical protein - none -
fig|6666666.230098.peg.4018 CDS CYYO01000027.1 1775 1323 -2 - 453 hypothetical protein - none -
fig|6666666.230098.peg.4019 CDS CYYO01000027.1 4126 1778 -1 - 2349 Mobile element protein - none -
fig|6666666.230098.peg.4020 CDS CYYO01000028.1 894 112 -3 - 783 Mobile element protein - none -
fig|6666666.230098.peg.4021 CDS CYYO01000028.1 2461 881 -1 - 1581 Mobile element protein - none -
fig|6666666.230098.peg.4022 CDS CYYO01000029.1 1855 917 -1 - 939 Mobile element protein - none -
fig|6666666.230098.peg.4023 CDS CYYO01000030.1 301 176 -1 - 126 hypothetical protein - none -
fig|6666666.230098.peg.4024 CDS CYYO01000030.1 1143 670 -3 - 474 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) Murein Hydrolases;
Recycling of Peptidoglycan Amino Acids
fig|6666666.230098.rna.1 RNA CYYO01000001.1 6650 6723 2 + 74 tRNA-His-GTG - none -
fig|6666666.230098.rna.2 RNA CYYO01000001.1 15681 15597 -3 - 85 tRNA-Ser-TGA - none -
fig|6666666.230098.rna.3 RNA CYYO01000001.1 30053 29963 -2 - 91 tRNA-Ser-GGA tRNAs
fig|6666666.230098.rna.4 RNA CYYO01000001.1 47436 47349 -3 - 88 tRNA-Ser-TGA - none -
fig|6666666.230098.rna.5 RNA CYYO01000001.1 394483 394396 -1 - 88 tRNA-Ser-GGA tRNAs
fig|6666666.230098.rna.6 RNA CYYO01000001.1 447088 447013 -1 - 76 tRNA-Arg-CCG tRNAs
fig|6666666.230098.rna.7 RNA CYYO01000002.1 47754 47678 -3 - 77 tRNA-Arg-TCT - none -
fig|6666666.230098.rna.8 RNA CYYO01000002.1 131208 131133 -3 - 76 tRNA-Gly-CCC tRNAs
fig|6666666.230098.rna.9 RNA CYYO01000002.1 288629 288553 -2 - 77 tRNA-Asp-GTC - none -
fig|6666666.230098.rna.10 RNA CYYO01000002.1 298786 298714 -1 - 73 tRNA-Gly-GCC tRNAs
fig|6666666.230098.rna.11 RNA CYYO01000002.1 298900 298819 -1 - 82 tRNA-Leu-CAG tRNAs
fig|6666666.230098.rna.12 RNA CYYO01000002.1 299000 298928 -2 - 73 tRNA-Gly-GCC tRNAs
fig|6666666.230098.rna.13 RNA CYYO01000002.1 299098 299015 -1 - 84 tRNA-Leu-GAG tRNAs
fig|6666666.230098.rna.14 RNA CYYO01000002.1 299223 299139 -3 - 85 tRNA-Leu-CAG tRNAs
fig|6666666.230098.rna.15 RNA CYYO01000002.1 299324 299249 -2 - 76 tRNA-Gly-GCC tRNAs
fig|6666666.230098.rna.16 RNA CYYO01000002.1 427624 427696 1 + 73 tRNA-Lys-TTT - none -
fig|6666666.230098.rna.17 RNA CYYO01000002.1 473039 472965 -2 - 75 tRNA-Glu-CTC - none -
fig|6666666.230098.rna.18 RNA CYYO01000002.1 473127 473052 -3 - 76 tRNA-Lys-CTT - none -
fig|6666666.230098.rna.19 RNA CYYO01000002.1 473220 473131 -3 - 90 tRNA-Ser-GCT - none -
fig|6666666.230098.rna.20 RNA CYYO01000002.1 553412 553487 2 + 76 tRNA-Thr-CGT - none -
fig|6666666.230098.rna.21 RNA CYYO01000003.1 22744 22820 1 + 77 tRNA-Met-CAT - none -
fig|6666666.230098.rna.22 RNA CYYO01000003.1 108779 108851 2 + 73 tRNA-Phe-GAA tRNAs
fig|6666666.230098.rna.23 RNA CYYO01000003.1 108867 108939 3 + 73 tRNA-Pro-CGG tRNAs
fig|6666666.230098.rna.24 RNA CYYO01000003.1 125908 125825 -1 - 84 tRNA-Leu-TAA - none -
fig|6666666.230098.rna.25 RNA CYYO01000003.1 143744 143661 -2 - 84 tRNA-Leu-TAA - none -
fig|6666666.230098.rna.26 RNA CYYO01000003.1 143837 143765 -2 - 73 tRNA-Gly-GCC tRNAs
fig|6666666.230098.rna.27 RNA CYYO01000003.1 421880 421964 2 + 85 tRNA-Leu-TAG - none -
fig|6666666.230098.rna.28 RNA CYYO01000003.1 497408 497482 2 + 75 tRNA-Glu-TTC - none -
fig|6666666.230098.rna.29 RNA CYYO01000004.1 15766 15839 1 + 74 tRNA-Thr-TGT - none -
fig|6666666.230098.rna.30 RNA CYYO01000004.1 15964 16049 1 + 86 tRNA-Tyr-GTA - none -
fig|6666666.230098.rna.31 RNA CYYO01000004.1 16064 16135 2 + 72 tRNA-Thr-GGT - none -
fig|6666666.230098.rna.32 RNA CYYO01000004.1 17427 17502 3 + 76 tRNA-Trp-CCA tRNAs
fig|6666666.230098.rna.33 RNA CYYO01000004.1 82743 84277 3 + 1535 Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA - none -
fig|6666666.230098.rna.34 RNA CYYO01000004.1 84411 84484 3 + 74 tRNA-Ile-GAT - none -
fig|6666666.230098.rna.35 RNA CYYO01000004.1 84550 84623 1 + 74 tRNA-Ala-TGC - none -
fig|6666666.230098.rna.36 RNA CYYO01000004.1 84745 87565 1 + 2821 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA - none -
fig|6666666.230098.rna.37 RNA CYYO01000004.1 87689 87798 2 + 110 5S RNA - none -
fig|6666666.230098.rna.38 RNA CYYO01000004.1 235313 235237 -2 - 77 tRNA-Ala-GGC tRNAs
fig|6666666.230098.rna.39 RNA CYYO01000004.1 263098 263026 -1 - 73 tRNA-Trp-CCA tRNAs
fig|6666666.230098.rna.40 RNA CYYO01000004.1 318486 318410 -3 - 77 tRNA-Thr-TGT - none -
fig|6666666.230098.rna.41 RNA CYYO01000005.1 153473 153549 2 + 77 tRNA-Asp-GTC - none -
fig|6666666.230098.rna.42 RNA CYYO01000006.1 205655 205731 2 + 77 tRNA-Arg-ACG tRNAs
fig|6666666.230098.rna.43 RNA CYYO01000006.1 205752 205828 3 + 77 tRNA-Arg-ACG tRNAs
fig|6666666.230098.rna.44 RNA CYYO01000006.1 262117 262043 -1 - 75 tRNA-Pro-TGG - none -
fig|6666666.230098.rna.45 RNA CYYO01000006.1 285253 285325 1 + 73 tRNA-Lys-CTT - none -
fig|6666666.230098.rna.46 RNA CYYO01000007.1 168449 168364 -2 - 86 tRNA-Undet-??? - none -
fig|6666666.230098.rna.47 RNA CYYO01000007.1 254920 254847 -1 - 74 tRNA-Gln-CTG - none -
fig|6666666.230098.rna.48 RNA CYYO01000008.1 51075 51001 -3 - 75 tRNA-Arg-CCT - none -
fig|6666666.230098.rna.49 RNA CYYO01000008.1 136880 136953 2 + 74 tRNA-Met-CAT - none -
fig|6666666.230098.rna.50 RNA CYYO01000008.1 163801 163872 1 + 72 tRNA-Met-CAT - none -
fig|6666666.230098.rna.51 RNA CYYO01000008.1 279352 279279 -1 - 74 tRNA-Gln-TTG - none -
fig|6666666.230098.rna.52 RNA CYYO01000010.1 9617 9689 2 + 73 tRNA-Lys-TTT - none -
fig|6666666.230098.rna.53 RNA CYYO01000010.1 64543 64616 1 + 74 tRNA-Pro-GGG tRNAs
fig|6666666.230098.rna.54 RNA CYYO01000011.1 969 897 -3 - 73 tRNA-Gly-TCC - none -
fig|6666666.230098.rna.55 RNA CYYO01000011.1 1061 976 -2 - 86 tRNA-Tyr-GTA - none -
fig|6666666.230098.rna.56 RNA CYYO01000012.1 12704 12629 -2 - 76 tRNA-Met-CAT - none -
fig|6666666.230098.rna.57 RNA CYYO01000013.1 31105 31179 1 + 75 tRNA-Val-TAC - none -
fig|6666666.230098.rna.58 RNA CYYO01000013.1 31211 31285 2 + 75 tRNA-Val-TAC - none -
fig|6666666.230098.rna.59 RNA CYYO01000013.1 110485 110561 1 + 77 tRNA-Asn-GTT - none -
fig|6666666.230098.rna.60 RNA CYYO01000013.1 110580 110656 3 + 77 tRNA-Asn-GTT - none -
fig|6666666.230098.rna.61 RNA CYYO01000016.1 59708 59622 -2 - 87 tRNA-Leu-CAA tRNAs
fig|6666666.230098.rna.62 RNA CYYO01000019.1 6218 6292 2 + 75 tRNA-Cys-GCA tRNAs
fig|6666666.230098.rna.63 RNA CYYO01000021.1 5673 5598 -3 - 76 tRNA-Phe-GAA tRNAs