Genome Meta Information: Lactobacillus johnsonii NCC 533 (GCA_000008065.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000008065.1 | ||
| HOMD Taxon-ID | HMT-0819 | ||
| Species Name (in use by HOMD) | Lactobacillus johnsonii | ||
| Organism Name (as deposited) | HMT-819 Lactobacillus johnsonii NCC 533 | ||
| Strain or Isolate | NCC 533 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus; s__Lactobacillus sp910589675 |
||
| Sequencing Technology | |||
| Genome Coverage | |||
| Contigs |
|
||
| Total Sequence Length | 1,992,676 (bp) | ||
| GC Percentage | 34.61 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/008/065/GCA_000008065.1_ASM806v1 | ||
| CDS | 1875 | ||
| Genes | 2006 | ||
| mRNA | 2006 | ||
| misc RNA | 34 | ||
| rRNA | 18 | ||
| tRNA | 78 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.72 % | ||
| CheckM Completeness | 96.34 % | ||
| CheckM Contamination | 0.37 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM806v1 |
| GenBank Assembly Accession | GCA_000008065.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000008065.1 [NCBI] |
| BioSample | SAMN02603676 [NCBI] |
| BioProject | PRJNA9638 [NCBI] |
| Submitter | Nestle Research Center, Switzerland |
| Submission Date | 2014-01-30T14:21:46.260 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 257314 |
| Isolation Source | |
| Geo Location | |
