16S rRNA Reference Sequences

There are 6,600 HOMD RefSeqs
         representing 820 (98.1%) of the HOMD taxa.

Phage

There are 25,388 phage predictions
         associated with 5,520 (67.5%) of the HOMD genomes.

Taxa

There are 836 taxa in the HOMD database.

Naming Status
Named and Cultivated	530 (63.4%)
Named and Uncultivated	10 (1.2%)
Unnamed and Cultivated	107 (12.8%)
Phylotype	189 (22.6%)
Primary Body Site
Oral	547 (65.4%)
Nasal	45 (5.4%)
Skin	31 (3.7%)
Gut	35 (4.2%)
Vaginal	35 (4.2%)
Pathogen	17 (2.0%)
Environmental	105 (12.6%)
Unassigned	11 (1.3%)
Other
Reference Taxa	10
Dropped Taxa	64
Phyla Represented
Bacillota	269
Pseudomonadota	139
Actinomycetota	133
Bacteroidota	133
Spirochaetota	53
Fusobacteriota	40
Patescibacteria	37
Mycoplasmatota	12
Synergistota	8
Chloroflexota	3
Chlorobiota	3
Verrucomicrobiota	2
Cyanobacteriota	1
Chlamydiota	1
(Archaea) Methanobacteriota	1
Eremiobacterota	1

Genomes

There are 8,177 genomes in HOMD
         representing 631 (75.5%) of the HOMD taxa.

Genome Assembly Level
Complete	2,240 (27.4%)
Contig	3,988 (48.8%)
Scaffold	1,806 (22.1%)
Chromosome	143 (1.7%)
MAGs
MAGs	955 (11.7%)
Contigs per Genome
Number of Contigs	Range: 1 - 771
Genome Size
Genome Size (bp)	Range: 523,632 - 9,982,772
Primary Body Site
from Oral taxa	4,690 (57.4%)
Nasal taxa	1201 (14.7%)
Skin taxa	784 (9.6%)
Gut taxa	350 (4.3%)
Vaginal taxa	317 (3.9%)
Pathogen taxa	161 (2.0%)
Environmental taxa	665 (8.1%)
Reference taxa	9 (0.1%)
Unassigned	0 (0.0%)
Annotations
BAKTA	8,177 (100.0%)
PROKKA	8,177 (100.0%)
NCBI	5,978 (73.1%)