HOMD Taxa Preferred Body Sites
[<-- Back] [Reload Page] Download Options| Taxon-ID | Abundance | Genus-Species | General Habitat | Major Body Site | Subsites of Primary Site | Other Body Sites | Site Reason | Curation Reference |
|---|---|---|---|---|---|---|---|---|
| HMT-0389 | link | Abiotrophia defectiva | Human host | Oral (Abundance: medium) | Buccal mucosa | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0427 | link | Abiotrophia sp. HMT-427 | Human host | Oral (Abundance: medium) | Buccal mucosa | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0345 | link | Absconditicoccaceae [G1] bacterium HMT-345 | Human host | Oral (Abundance: medium) | Saliva | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0874 | link | Absconditicoccaceae [G1] bacterium HMT-874 | Human host | Oral (Abundance: medium) | Throat | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0875 | link | Absconditicoccaceae [G1] bacterium HMT-875 | Human host | Oral (Abundance: medium) | Saliva | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0990 | Absconditicoccaceae [G1] bacterium HMT-990 (DROPPED) | Unassigned | Unassigned | |||||
| HMT-0991 | link | Absconditicoccaceae [G2] bacterium HMT-991 | Taxonomic Reference | Reference (Abundance: scarce) | Taxonomic Reference | Curator assignment | ||
| HMT-0343 | link | Achromobacter xylosoxidans | Environmental | Environmental (Abundance: medium) | Soil or Water | Opportunistic Pathogen | Curator assignment | |
| HMT-0209 | link | Acidovorax ebreus | Environmental | Environmental (Abundance: low) | Soil or Water | Curator assignment | ||
| HMT-0216 | link | Acidovorax temperans | Environmental | Environmental (Abundance: low) | Soil or Water | Curator assignment | ||
| HMT-0554 | link | Acinetobacter baumannii | Environmental | Environmental (Abundance: scarce) | Opportunistic Pathogen | Curator assignment | ||
| HMT-0297 | link | Acinetobacter johnsonii | Environmental | Environmental (Abundance: low) | Soil or Water | Curator assignment | ||
| HMT-0282 | link | Acinetobacter junii | Environmental | Environmental (Abundance: low) | Soil or Water | Opportunistic Pathogen | Curator assignment | |
| HMT-0005 | link | Acinetobacter lwoffii | Environmental | Environmental (Abundance: low) | Soil or Water | Opportunistic Pathogen | Curator assignment | |
| HMT-0010 | link | Acinetobacter radioresistens | Environmental | Environmental (Abundance: scarce) | Soil or Water | Curator assignment | ||
| HMT-0408 | link | Acinetobacter sp. HMT-408 | Human host | Oral (Abundance: scarce) | Unassigned | Curator assignment and 16S rRNA gene data | ||
| HMT-0888 | link | Actinomyces dentalis | Human host | Oral (Abundance: high) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0618 | link | Actinomyces gerencseriae | Human host | Oral (Abundance: high) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0866 | link | Actinomyces graevenitzii | Human host | Oral (Abundance: high) | Tongue dorsum | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0645 | link | Actinomyces israelii | Human host | Oral (Abundance: high) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0849 | link | Actinomyces johnsonii | Human host | Oral (Abundance: medium) | Subgingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0852 | link | Actinomyces massiliensis | Human host | Oral (Abundance: high) | Supragingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0176 | link | Actinomyces naeslundii | Human host | Oral (Abundance: high) | Supragingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0708 | link | Actinomyces oricola | Human host | Oral (Abundance: low) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0043 | link | Actinomyces oris clade-043 | Human host | Oral (Abundance: high) | Supragingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0079 | link | Actinomyces oris clade-079 | Human host | Oral (Abundance: medium) | Subgingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0144 | link | Actinomyces oris clade-144 | Human host | Oral (Abundance: medium) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0169 | link | Actinomyces oris clade-169 | Human host | Oral (Abundance: high) | Supragingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0171 | link | Actinomyces oris clade-171 | Human host | Oral (Abundance: high) | Supragingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0893 | link | Actinomyces oris clade-893 | Human host | Oral (Abundance: high) | Supragingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0746 | link | Actinomyces radicidentis | Human host | Oral (Abundance: scarce) | Unassigned | Curator assignment | ||
| HMT-0170 | link | Actinomyces sp. HMT-170 | Human host | Oral (Abundance: high) | Subgingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0175 | Actinomyces sp. HMT-175 (DROPPED) | Unassigned | Unassigned | |||||
| HMT-0177 | Actinomyces sp. HMT-177 (DROPPED) | Unassigned | Unassigned | |||||
| HMT-0403 | link | Actinomyces sp. HMT-403 | Human host | Oral (Abundance: medium) | Supragingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0414 | link | Actinomyces sp. HMT-414 | Human host | Oral (Abundance: medium) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0446 | Actinomyces sp. HMT-446 (DROPPED) | Unassigned | Unassigned | |||||
| HMT-0448 | link | Actinomyces sp. HMT-448 | Human host | Oral (Abundance: medium) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0449 | Actinomyces sp. HMT-449 (DROPPED) | Unassigned | Unassigned | |||||
| HMT-0525 | link | Actinomyces sp. HMT-525 | Human host | Oral (Abundance: low) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0896 | link | Actinomyces sp. HMT-896 | Human host | Oral (Abundance: low) | Supragingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0897 | link | Actinomyces sp. HMT-897 | Human host | Oral (Abundance: medium) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0179 | link | Actinomyces timonensis | Human host | Oral (Abundance: low) | Subgingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0688 | link | Actinomyces viscosus | Human host | Oral (Abundance: low) | Supragingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0407 | Aeriscardovia sp. HMT-407 | Human host | Unassigned (Abundance: scarce) | Unassigned | Curator assignment | |||
| HMT-0312 | link | Aerococcus viridans | Environmental | Environmental (Abundance: scarce) | Soil or Water | Opportunistic Pathogen | Curator assignment | |
| HMT-0559 | link | Afipia broomeae | Environmental | Environmental (Abundance: scarce) | not determined | Opportunistic Pathogen | Curator assignment | |
| HMT-0960 | link | Agathobacter rectalis | Human host | Gut (Abundance: high) | Stool | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0531 | link | Aggregatibacter actinomycetemcomitans | Human host | Oral (Abundance: low) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0545 | link | Aggregatibacter aphrophilus | Human host | Oral (Abundance: medium) | Supragingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0426 | link | Aggregatibacter kilianii | Human host | Oral (Abundance: medium) | Saliva | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0720 | Aggregatibacter paraphrophilus (DROPPED) | Unassigned | Unassigned | |||||
| HMT-0762 | link | Aggregatibacter segnis | Human host | Oral (Abundance: medium) | Supragingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0458 | link | Aggregatibacter sp. HMT-458 | Human host | Oral (Abundance: medium) | Supragingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0512 | Aggregatibacter sp. HMT-512 (DROPPED) | Unassigned | Unassigned | |||||
| HMT-0513 | link | Aggregatibacter sp. HMT-513 | Human host | Oral (Abundance: medium) | Keratinized gingiva | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0898 | link | Aggregatibacter sp. HMT-898 | Human host | Oral (Abundance: low) | Unassigned | Curator assignment and 16S rRNA gene data | ||
| HMT-0949 | link | Aggregatibacter sp. HMT-949 | Human host | Oral (Abundance: low) | Supragingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0485 | link | Agrobacterium tumefaciens | Environmental | Environmental (Abundance: scarce) | Soil or Water | Curator assignment | ||
| HMT-0963 | link | Akkermansia muciniphila | Human host | Gut (Abundance: high) | Stool | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0964 | link | Alistipes onderdonkii | Human host | Gut (Abundance: high) | Stool | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0965 | link | Alistipes putredinis | Human host | Gut (Abundance: high) | Stool | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0966 | link | Alistipes shahii | Human host | Gut (Abundance: high) | Stool | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0045 | link | Alkalihalobacillus clausii | Environmental | Environmental (Abundance: scarce) | Soil or Water | Curator assignment | ||
| HMT-0831 | link | Alloiococcus otitis | Human host | Skin (Abundance: scarce) | Ear | Nasal (Abundance: scarce) | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | https://doi.org/10.1111/j.1600-0463.2008.01003.x |
| HMT-0302 | link | Alloprevotella rava | Human host | Oral (Abundance: medium) | Palatine tonsils | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0308 | link | Alloprevotella sp. HMT-308 | Human host | Oral (Abundance: medium) | Throat | Curator assignment and 16S rRNA gene data | ||
| HMT-0413 | link | Alloprevotella sp. HMT-413 | Human host | Oral (Abundance: high) | Keratinized gingiva | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0473 | link | Alloprevotella sp. HMT-473 | Human host | Oral (Abundance: medium) | Keratinized gingiva | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0474 | Alloprevotella sp. HMT-474 (DROPPED) | Unassigned | Unassigned | |||||
| HMT-0912 | link | Alloprevotella sp. HMT-912 | Human host | Oral (Abundance: low) | Palatine tonsils | Curator assignment and 16S rRNA gene data | ||
| HMT-0913 | link | Alloprevotella sp. HMT-913 | Human host | Oral (Abundance: low) | Unassigned | Curator assignment and 16S rRNA gene data | ||
| HMT-0914 | link | Alloprevotella sp. HMT-914 | Human host | Oral (Abundance: medium) | Unassigned | Curator assignment and 16S rRNA gene data | ||
| HMT-0466 | link | Alloprevotella tannerae | Human host | Oral (Abundance: high) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | https://doi.org/10.1099/00207713-44-4-599 | |
| HMT-0198 | link | Alloscardovia omnicolens | Human host | Oral (Abundance: low) | Saliva | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0859 | link | Anaerococcus lactolyticus | Human host | Vaginal (Abundance: scarce) | Vaginal | Curator assignment | https://doi.org/10.1099/00207713-42-4-602 | |
| HMT-0792 | link | Anaerococcus nagyae | Human host | Skin (Abundance: high) | Skin | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0017 | link | Anaerococcus octavius | Human host | Skin (Abundance: medium) | Skin | Nasal (Abundance: medium) | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | https://doi.org/10.1099/00207713-51-4-1521 |
| HMT-0738 | link | Anaerococcus prevotii | Human host | Nasal (Abundance: low) | Nasal | Skin (Abundance: low) | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | https://doi.org/10.1099/00207713-51-4-1521 https://doi.org/10.4056/sigs.24194 |
| HMT-0290 | link | Anaerococcus sp. HMT-290 | Human host | Nasal (Abundance: high) | Nasal | Skin (Abundance: high) | Curator assignment and 16S rRNA gene data | |
| HMT-0295 | link | Anaerococcus sp. HMT-295 | Human host | Skin (Abundance: medium) | Skin | Nasal (Abundance: low) | Curator assignment and 16S rRNA gene data | |
| HMT-0788 | link | Anaerococcus tetradius | Human host | Vaginal (Abundance: low) | Vaginal | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | https://doi.org/10.1099/00207713-51-4-1521 | |
| HMT-0294 | link | Anaerococcus vaginimassiliensis | Human host | Vaginal (Abundance: scarce) | Vaginal | Curator assignment | ||
| HMT-0121 | link | Anaeroglobus geminatus | Human host | Oral (Abundance: medium) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0123 | link | Anaeroglobus massiliensis | Human host | Oral (Abundance: low) | Throat | Vaginal (Abundance: scarce) | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | |
| HMT-0995 | link | Anaerolinea thermophila | Taxonomic Reference | Reference (Abundance: scarce) | Taxonomic Reference | Curator assignment | ||
| HMT-0439 | link | Anaerolineae [G1] bacterium HMT-439 | Human host | Oral (Abundance: medium) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0386 | link | Anaerosphaera mikwangii | Human host | Oral (Abundance: scarce) | Unassigned | Curator assignment | ||
| HMT-0383 | link | Anaerovoracaceae [G1] bacterium HMT-383 | Human host | Oral (Abundance: scarce) | Unassigned | Curator assignment and 16S rRNA gene data | ||
| HMT-0105 | link | Anaerovoracaceae [G1] infirmum | Human host | Oral (Abundance: medium) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0467 | link | Anaerovoracaceae [G1] sulci | Human host | Oral (Abundance: medium) | Tongue dorsum | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0091 | link | Anaerovoracaceae [G2] bacterium HMT-091 | Human host | Oral (Abundance: low) | Palatine tonsils | Curator assignment and 16S rRNA gene data | ||
| HMT-0495 | link | Anaerovoracaceae [G3] bacterium HMT-495 | Human host | Oral (Abundance: scarce) | not determined | Curator assignment and 16S rRNA gene data | ||
| HMT-0950 | Anaerovoracaceae [G3] bacterium HMT-950 | Human host | Oral (Abundance: scarce) | not determined | Curator assignment and 16S rRNA gene data | |||
| HMT-0103 | link | Anaerovoracaceae [G4] bacterium HMT-103 | Human host | Oral (Abundance: low) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0369 | Anaerovoracaceae [G4] bacterium HMT-369 (DROPPED) | Unassigned | Unassigned | |||||
| HMT-0493 | link | Anaerovoracaceae [G5] bacterium HMT-493 | Human host | Oral (Abundance: scarce) | not determined | Curator assignment and 16S rRNA gene data | ||
| HMT-0759 | link | Anaerovoracaceae [G5] saphenum | Human host | Oral (Abundance: medium) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0382 | Anaerovoracaceae [G8] bacterium HMT-382 | Human host | Unassigned (Abundance: scarce) | Unassigned | Curator assignment | |||
| HMT-0182 | link | Anoxybacillus flavithermus | Environmental | Environmental (Abundance: scarce) | Soil or Water | Curator assignment | ||
| HMT-0660 | link | Aquamicrobium lusatiense | Environmental | Environmental (Abundance: scarce) | Soil or Water | Curator assignment | ||
| HMT-0739 | link | Arachnia propionica | Human host | Oral (Abundance: medium) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0194 | link | Arachnia rubra | Human host | Oral (Abundance: high) | Subgingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0811 | link | Arcanobacterium haemolyticum | Pathogen | Pathogen (Abundance: scarce) | Opportunistic Pathogen | Curator assignment | ||
| HMT-0190 | link | Arsenicicoccus sp. HMT-190 | Environmental | Environmental (Abundance: scarce) | Soil or Water | Curator assignment | ||
| HMT-0229 | link | Arthrospira platensis | Environmental | Environmental (Abundance: scarce) | Soil or Water | Curator assignment | ||
| HMT-0674 | link | Atopobium minutum | Human host | Oral (Abundance: scarce) | not determined | Opportunistic Pathogen | Curator assignment | |
| HMT-0824 | link | Bacillus anthracis | Pathogen | Pathogen (Abundance: scarce) | Frank pathogen | Curator assignment | ||
| HMT-0468 | link | Bacillus subtilis | Environmental | Environmental (Abundance: scarce) | Soil or Water | Curator assignment | ||
| HMT-0967 | link | Bacteroides caccae | Human host | Gut (Abundance: high) | Stool | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0630 | link | Bacteroides heparinolyticus | Human host | Oral (Abundance: low) | Periodontitis | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | https://doi.org/10.1099/00207713-35-4-438 | |
| HMT-0968 | link | Bacteroides ovatus | Human host | Gut (Abundance: high) | Stool | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0787 | link | Bacteroides pyogenes | Environmental | Environmental (Abundance: scarce) | Animal host | Opportunistic Pathogen | Curator assignment | https://doi.org/10.3390/microorganisms13061200 |
| HMT-0969 | link | Bacteroides stercoris | Human host | Gut (Abundance: high) | Stool | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0970 | link | Bacteroides thetaiotaomicron | Human host | Gut (Abundance: high) | Stool | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0971 | link | Bacteroides uniformis | Human host | Gut (Abundance: high) | Stool | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0972 | link | Bacteroides xylanisolvens | Human host | Gut (Abundance: high) | Stool | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0465 | link | Bacteroides zoogleoformans | Human host | Oral (Abundance: low) | Periodontitis | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | https://doi.org/10.1099/00207713-32-3-271 https://doi.org/10.1099/00207713-44-4-599 | |
| HMT-0001 | link | Bartonella schoenbuchensis | Pathogen | Pathogen (Abundance: scarce) | Zoonotic pathogen | Curator assignment | ||
| HMT-0039 | Bdellovibrio sp. HMT-039 | Environmental | Environmental (Abundance: scarce) | Soil or Water | Curator assignment | |||
| HMT-0895 | link | Bifidobacterium animalis | Environmental | Environmental (Abundance: scarce) | Food | Gastrointestinal Tract (Abundance: scarce) | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | https://doi.org/10.1073/pnas.1011737107 |
| HMT-0889 | link | Bifidobacterium breve | Human host | Vaginal (Abundance: medium) | Vaginal | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0588 | link | Bifidobacterium dentium | Human host | Oral (Abundance: scarce) | Dental Caries | Gastrointestinal Tract (Abundance: scarce) | Curator assignment | https://doi.org/10.1371/journal.pgen.1000785 https://doi.org/10.1186/s12866-021-02166-6 |
| HMT-0862 | link | Bifidobacterium longum | Human host | Gut (Abundance: medium) | Stool | Vaginal (Abundance: low) | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | |
| HMT-0891 | link | Bifidobacterium scardovii | Human host | Vaginal (Abundance: medium) | Vaginal | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0890 | link | Bifidobacterium subtile | Environmental | Environmental (Abundance: scarce) | Soil or Water | Curator assignment | ||
| HMT-0828 | link | Bordetella pertussis | Pathogen | Pathogen (Abundance: scarce) | Frank pathogen | Curator assignment | ||
| HMT-0636 | Bosea vestrisii (DROPPED) | Unassigned | Unassigned | |||||
| HMT-0597 | link | Bradyrhizobium elkanii | Environmental | Environmental (Abundance: low) | Soil or Water | Curator assignment | ||
| HMT-0340 | link | Brevibacterium paucivorans | Environmental | Environmental (Abundance: scarce) | Food | Opportunistic Pathogen | Curator assignment | https://doi.org/10.1007/s10529-005-2878-3 |
| HMT-0590 | link | Brevundimonas diminuta | Environmental | Environmental (Abundance: low) | Soil or Water | Opportunistic Pathogen | Curator assignment | |
| HMT-0241 | link | Brochothrix thermosphacta | Environmental | Environmental (Abundance: scarce) | Food spoilage | Curator assignment | https://doi.org/10.1128/AEM.02786-16 | |
| HMT-0192 | link | Brooklawnia sp. HMT-192 | Human host | Oral (Abundance: low) | Supragingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0544 | link | Brucella anthropi | Pathogen | Pathogen (Abundance: scarce) | Frank pathogen | Curator assignment | ||
| HMT-0603 | link | Bulleidia extructa | Human host | Oral (Abundance: medium) | Palatine tonsils | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0571 | link | Burkholderia cepacia | Environmental | Environmental (Abundance: low) | Soil or Water | Opportunistic Pathogen | Curator assignment | |
| HMT-0080 | link | Butyrivibrio sp. HMT-080 | Human host | Oral (Abundance: low) | Palatine tonsils | Curator assignment and 16S rRNA gene data | ||
| HMT-0090 | Butyrivibrio sp. HMT-090 | Human host | Unassigned (Abundance: scarce) | Unassigned | Curator assignment | |||
| HMT-0455 | link | Butyrivibrio sp. HMT-455 | Human host | Oral (Abundance: low) | Throat | Curator assignment and 16S rRNA gene data | ||
| HMT-0994 | link | Caldilinea aerophila | Taxonomic Reference | Reference (Abundance: scarce) | Taxonomic Reference | Curator assignment | ||
| HMT-0433 | link | Campylobacter concisus clade-433 | Human host | Oral (Abundance: high) | Throat | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0575 | link | Campylobacter concisus clade-575 | Human host | Oral (Abundance: medium) | Throat | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0580 | link | Campylobacter curvus | Human host | Oral (Abundance: low) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0623 | link | Campylobacter gracilis | Human host | Oral (Abundance: medium) | Subgingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0748 | link | Campylobacter rectus | Human host | Oral (Abundance: medium) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0763 | link | Campylobacter showae | Human host | Oral (Abundance: medium) | Supragingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0044 | link | Campylobacter sp. HMT-044 | Human host | Oral (Abundance: medium) | Hard palate | Curator assignment and 16S rRNA gene data | ||
| HMT-0776 | link | Campylobacter sputorum | Environmental | Environmental (Abundance: scarce) | Animal host | Curator assignment | ||
| HMT-0842 | link | Campylobacter ureolyticus | Human host | Skin (Abundance: medium) | Skin | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0332 | link | Capnocytophaga bilenii | Human host | Oral (Abundance: medium) | Supragingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0337 | link | Capnocytophaga gingivalis | Human host | Oral (Abundance: high) | Subgingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0325 | link | Capnocytophaga granulosa | Human host | Oral (Abundance: medium) | Supragingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0627 | link | Capnocytophaga haemolytica | Human host | Oral (Abundance: low) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0329 | link | Capnocytophaga leadbetteri | Human host | Oral (Abundance: high) | Supragingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0700 | link | Capnocytophaga ochracea | Human host | Oral (Abundance: medium) | Subgingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0326 | link | Capnocytophaga periodontitidis | Human host | Oral (Abundance: medium) | Supragingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0323 | Capnocytophaga sp. HMT-323 (DROPPED) | Unassigned | Unassigned | |||||
| HMT-0324 | Capnocytophaga sp. HMT-324 (DROPPED) | Unassigned | Unassigned | |||||
| HMT-0334 | Capnocytophaga sp. HMT-334 (DROPPED) | Unassigned | Unassigned | |||||
| HMT-0335 | Capnocytophaga sp. HMT-335 (DROPPED) | Unassigned | Unassigned | |||||
| HMT-0336 | Capnocytophaga sp. HMT-336 (DROPPED) | Unassigned | Unassigned | |||||
| HMT-0338 | link | Capnocytophaga sp. HMT-338 | Human host | Oral (Abundance: medium) | Subgingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0380 | Capnocytophaga sp. HMT-380 (DROPPED) | Unassigned | Unassigned | |||||
| HMT-0412 | Capnocytophaga sp. HMT-412 (DROPPED) | Unassigned | Unassigned | |||||
| HMT-0470 | link | Capnocytophaga sp. HMT-470 | Human host | Oral (Abundance: medium) | Supragingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0471 | link | Capnocytophaga sp. HMT-471 | Human host | Oral (Abundance: medium) | Supragingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0863 | link | Capnocytophaga sp. HMT-863 | Human host | Oral (Abundance: medium) | Supragingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0864 | Capnocytophaga sp. HMT-864 (DROPPED) | Unassigned | Unassigned | |||||
| HMT-0878 | link | Capnocytophaga sp. HMT-878 | Human host | Oral (Abundance: medium) | Supragingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0901 | link | Capnocytophaga sp. HMT-901 | Human host | Oral (Abundance: scarce) | Supragingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0902 | Capnocytophaga sp. HMT-902 (DROPPED) | Unassigned | Unassigned | |||||
| HMT-0903 | Capnocytophaga sp. HMT-903 (DROPPED) | Unassigned | Unassigned | |||||
| HMT-0775 | link | Capnocytophaga sputigena | Human host | Oral (Abundance: high) | Supragingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0633 | link | Cardiobacterium hominis | Human host | Oral (Abundance: high) | Subgingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0540 | link | Cardiobacterium valvarum | Human host | Oral (Abundance: medium) | Subgingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0428 | link | Catonella massiliensis | Human host | Oral (Abundance: medium) | Throat | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0165 | link | Catonella morbi | Human host | Oral (Abundance: medium) | Subgingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0164 | link | Catonella sp. HMT-164 | Human host | Oral (Abundance: scarce) | Palatine tonsils | Curator assignment and 16S rRNA gene data | ||
| HMT-0451 | link | Catonella sp. HMT-451 | Human host | Oral (Abundance: scarce) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0002 | link | Caulobacter sp. HMT-002 | Environmental | Environmental (Abundance: scarce) | Soil or Water | Curator assignment | ||
| HMT-0374 | link | Cellulosimicrobium funkei | Environmental | Environmental (Abundance: scarce) | Soil or Water | Opportunistic Pathogen | Curator assignment | https://doi.org/10.1099/ijs.0.63882-0 https://doi.org/10.1016/j.jhazmat.2017.03.037 |
| HMT-0726 | link | Centipeda periodontii | Human host | Oral (Abundance: medium) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0733 | link | Chlamydia pneumoniae | Pathogen | Pathogen (Abundance: scarce) | Frank pathogen | Curator assignment | ||
| HMT-0984 | link | Chlorobium limicola | Taxonomic Reference | Reference (Abundance: scarce) | Taxonomic Reference | Curator assignment | ||
| HMT-0319 | Chryseobacterium sp. HMT-319 | Environmental | Environmental (Abundance: scarce) | Soil or Water | Curator assignment | |||
| HMT-0422 | link | Cloacibacterium normanense | Human host | Oral (Abundance: low) | Buccal mucosa | Nasal (Abundance: low) | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | https://doi.org/10.1099/ijs.0.64218-0 |
| HMT-0206 | link | Cloacibacterium sp. HMT-206 | Human host | Oral (Abundance: medium) | Buccal mucosa | Curator assignment and 16S rRNA gene data | ||
| HMT-0093 | link | Clostridiales [F1 G1] bacterium HMT-093 | Human host | Oral (Abundance: low) | Palatine tonsils | Curator assignment and 16S rRNA gene data | ||
| HMT-0402 | Clostridiales [F1 G2] bacterium HMT-402 | Human host | Unassigned (Abundance: scarce) | Unassigned | Curator assignment | |||
| HMT-0876 | link | Clostridiales [F3 G1] bacterium HMT-876 | Human host | Oral (Abundance: scarce) | not determined | Curator assignment | ||
| HMT-0858 | link | Comamonas testosteroni | Environmental | Environmental (Abundance: scarce) | Soil or Water | Opportunistic Pathogen | Curator assignment | |
| HMT-0019 | link | Corynebacterium accolens | Human host | Nasal (Abundance: high) | Nasal | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0030 | link | Corynebacterium afermentans | Human host | Skin (Abundance: low) | Skin | Nasal (Abundance: low) | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | |
| HMT-0031 | link | Corynebacterium amycolatum | Human host | Nasal (Abundance: scarce) | Nasal | Skin (Abundance: scarce) | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | |
| HMT-0033 | link | Corynebacterium appendicis | Human host | Nasal (Abundance: low) | Nasal | Skin (Abundance: scarce) | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | |
| HMT-0034 | link | Corynebacterium aurimucosum clade-034 | Human host | Nasal (Abundance: low) | Nasal | Skin (Abundance: scarce) | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | |
| HMT-0450 | link | Corynebacterium aurimucosum clade-450 | Human host | Nasal (Abundance: low) | Nasal | Skin (Abundance: scarce) | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | |
| HMT-0208 | link | Corynebacterium bovis | Human host | Skin (Abundance: scarce) | Skin | Curator assignment | ||
| HMT-0341 | link | Corynebacterium coyleae | Human host | Nasal (Abundance: low) | Nasal | Skin (Abundance: scarce) | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | |
| HMT-0591 | link | Corynebacterium diphtheriae | Pathogen | Pathogen (Abundance: low) | Frank pathogen | Curator assignment | ||
| HMT-0595 | link | Corynebacterium durum | Human host | Oral (Abundance: high) | Supragingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0207 | link | Corynebacterium gottingense | Human host | Nasal (Abundance: low) | Nasal | Skin (Abundance: low) | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | |
| HMT-0445 | link | Corynebacterium hesseae | Human host | Nasal (Abundance: low) | Nasal | Skin (Abundance: low) | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | |
| HMT-0047 | link | Corynebacterium jeikeium | Human host | Nasal (Abundance: low) | Nasal | Skin (Abundance: scarce) | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | |
| HMT-0783 | link | Corynebacterium kefirresidentii | Human host | Nasal (Abundance: high) | Nasal | Skin (Abundance: high) | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | |
| HMT-0049 | link | Corynebacterium kroppenstedtii | Human host | Skin (Abundance: high) | Skin | Nasal (Abundance: medium) | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | |
| HMT-0454 | link | Corynebacterium macclintockiae | Human host | Nasal (Abundance: low) | Nasal | Skin (Abundance: scarce) | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | |
| HMT-0050 | link | Corynebacterium macginleyi | Human host | Nasal (Abundance: high) | Nasal | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0333 | link | Corynebacterium massiliense | Human host | Nasal (Abundance: low) | Nasal | Skin (Abundance: low) | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | |
| HMT-0328 | link | Corynebacterium mastitidis | Human host | Skin (Abundance: scarce) | Skin | Curator assignment | ||
| HMT-0666 | link | Corynebacterium matruchotii | Human host | Oral (Abundance: high) | Supragingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0053 | link | Corynebacterium minutissimum | Human host | Nasal (Abundance: low) | Nasal | Skin (Abundance: low) | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | |
| HMT-0835 | link | Corynebacterium mucifaciens | Human host | Skin (Abundance: scarce) | Skin | Curator assignment | ||
| HMT-0832 | link | Corynebacterium otitidis | Human host | Skin (Abundance: low) | Ear | Nasal (Abundance: low) | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | https://doi.org/10.3389/fmicb.2018.00834 |
| HMT-0054 | link | Corynebacterium pilbarense | Human host | Nasal (Abundance: low) | Nasal | Skin (Abundance: low) | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | |
| HMT-0059 | link | Corynebacterium propinquum | Human host | Nasal (Abundance: medium) | Nasal | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0060 | link | Corynebacterium pseudodiphtheriticum | Human host | Nasal (Abundance: high) | Nasal | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0062 | link | Corynebacterium simulans | Human host | Nasal (Abundance: medium) | Nasal | Skin (Abundance: scarce) | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | |
| HMT-0063 | link | Corynebacterium singulare | Human host | Nasal (Abundance: low) | Nasal | Skin (Abundance: scarce) | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | |
| HMT-0072 | link | Corynebacterium striatum | Human host | Nasal (Abundance: low) | Nasal | Skin (Abundance: low) | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | |
| HMT-0077 | link | Corynebacterium tuberculostearicum | Human host | Nasal (Abundance: medium) | Nasal | Skin (Abundance: medium) | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | |
| HMT-0184 | link | Corynebacterium tuscaniense | Human host | Skin (Abundance: scarce) | Skin | Curator assignment | ||
| HMT-0853 | link | Corynebacterium urealyticum | Human host | Nasal (Abundance: low) | Nasal | Skin (Abundance: scarce) | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | |
| HMT-0753 | link | Cronobacter sakazakii | Environmental | Environmental (Abundance: scarce) | Soil or Water | Opportunistic Pathogen | Curator assignment | |
| HMT-0579 | link | Cryptobacterium curtum | Human host | Oral (Abundance: scarce) | Periodontitis, Dental caries | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | https://doi.org/10.1099/00207713-49-3-1193 https://doi.org/10.1177/154405910308200503 | |
| HMT-0027 | link | Cupriavidus gilardii | Environmental | Environmental (Abundance: scarce) | Soil or Water | Opportunistic Pathogen | Curator assignment | |
| HMT-0530 | link | Cutibacterium acnes | Human host | Skin (Abundance: high) | Skin | Nasal (Abundance: high) | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | |
| HMT-0552 | link | Cutibacterium avidum | Human host | Skin (Abundance: medium) | Skin | Nasal (Abundance: medium) | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | |
| HMT-0114 | link | Cutibacterium granulosum | Human host | Skin (Abundance: high) | Skin | Nasal (Abundance: medium) | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | |
| HMT-0193 | link | Cutibacterium modestum | Human host | Skin (Abundance: low) | Skin | Nasal (Abundance: scarce) | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | https://doi.org/10.1007/s10482-021-01589-5 |
| HMT-0791 | link | Cutibacterium namnetense | Human host | Skin (Abundance: high) | Skin | Nasal (Abundance: medium) | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | |
| HMT-0023 | link | Delftia acidovorans | Environmental | Environmental (Abundance: scarce) | Soil or Water | Curator assignment | ||
| HMT-0354 | link | Dermabacter hominis | Human host | Nasal (Abundance: low) | Nasal | Skin (Abundance: scarce) | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | |
| HMT-0041 | link | Desulfobulbus oralis | Human host | Oral (Abundance: medium) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0703 | link | Desulfomicrobium orale | Human host | Oral (Abundance: medium) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0605 | link | Desulfovibrio fairfieldensis | Human host | Oral (Abundance: low) | Periodontitis | Gastrointestinal Tract (Abundance: low) | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | https://doi.org/10.1034/j.1399-302X.2002.170510.x |
| HMT-0040 | link | Desulfovibrio sp. HMT-040 | Environmental | Environmental (Abundance: scarce) | Soil or Water | Curator assignment | ||
| HMT-0118 | link | Dialister invisus | Human host | Gut (Abundance: high) | Stool | Oral (Abundance: medium) | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | |
| HMT-0843 | link | Dialister micraerophilus | Human host | Vaginal (Abundance: medium) | Vaginal | Oral (Abundance: low) | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | |
| HMT-0736 | link | Dialister pneumosintes | Human host | Oral (Abundance: medium) | Subgingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0119 | link | Dialister sp. HMT-119 | Human host | Oral (Abundance: scarce) | not determined | Curator assignment and 16S rRNA gene data | ||
| HMT-0502 | Dialister sp. HMT-502 (DROPPED) | Unassigned | Unassigned | |||||
| HMT-0368 | link | Dietzia cinnamea | Environmental | Environmental (Abundance: scarce) | Soil or Water | Opportunistic Pathogen | Curator assignment | |
| HMT-0813 | link | Dolosigranulum pigrum | Human host | Nasal (Abundance: high) | Nasal | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0654 | link | Eggerthella lenta | Human host | Gut (Abundance: low) | Stool | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | https://doi.org/10.1371/journal.pbio.3002125 | |
| HMT-0569 | link | Eggerthia catenaformis | Human host | Oral (Abundance: medium) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0577 | link | Eikenella corrodens | Human host | Oral (Abundance: medium) | Subgingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0009 | Eikenella sp. HMT-009 (DROPPED) | Unassigned | Unassigned | |||||
| HMT-0011 | link | Eikenella sp. HMT-011 | Human host | Oral (Abundance: scarce) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0196 | link | Enhydrobacter aerosaccus | Human host | Unassigned (Abundance: scarce) | Unassigned | Curator assignment | ||
| HMT-0565 | link | Enterobacter cancerogenus | Environmental | Environmental (Abundance: medium) | Soil or Water | Opportunistic Pathogen | Curator assignment | |
| HMT-0634 | link | Enterobacter hormaechei | Human host | Nasal (Abundance: low) | Nasal | Gastrointestinal Tract (Abundance: scarce) | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | https://doi.org/10.1128/jcm.27.9.2046-2049.1989 |
| HMT-0801 | link | Enterococcus casseliflavus | Human host | Gut (Abundance: scarce) | Gastrointestinal tract | Opportunistic Pathogen | Curator assignment | https://doi.org/10.1128/mmbr.00023-12 https://doi.org/10.1093/jac/dkaf095 |
| HMT-0880 | link | Enterococcus durans | Environmental | Environmental (Abundance: scarce) | Food | Opportunistic Pathogen | Curator assignment | |
| HMT-0604 | link | Enterococcus faecalis | Human host | Gut (Abundance: scarce) | Gastrointestinal tract | Opportunistic Pathogen | Curator assignment | https://doi.org/10.1016/j.tim.2024.04.010 |
| HMT-0803 | link | Enterococcus italicus | Environmental | Environmental (Abundance: scarce) | Food | Curator assignment | ||
| HMT-0802 | link | Enterococcus saccharolyticus | Environmental | Environmental (Abundance: scarce) | Soil or Water | Curator assignment | ||
| HMT-0999 | Eremiobacterota [C1 O1 F1 G1] bacterium HMT-999 | Taxonomic Reference | Reference (Abundance: scarce) | Taxonomic Reference | Curator assignment | |||
| HMT-0484 | link | Erysipelothrix tonsillarum | Environmental | Environmental (Abundance: scarce) | Animal host | Curator assignment | ||
| HMT-0904 | link | Erysipelotrichaceae [G1] bacterium HMT-904 | Human host | Oral (Abundance: scarce) | Palatine tonsils | Curator assignment and 16S rRNA gene data | ||
| HMT-0905 | link | Erysipelotrichaceae [G1] bacterium HMT-905 | Human host | Oral (Abundance: low) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0747 | link | Erythrobacter ramosus | Environmental | Environmental (Abundance: scarce) | Soil or Water | Curator assignment | ||
| HMT-0007 | link | Erythrobacter tepidarius | Environmental | Environmental (Abundance: scarce) | Soil or Water | Curator assignment | ||
| HMT-0574 | link | Escherichia coli | Human host | Gut (Abundance: medium) | Gastrointestinal tract | Nasal (Abundance: medium) | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | |
| HMT-0655 | link | Eubacterium limosum | Human host | Gut (Abundance: low) | Stool | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | https://doi.org/10.1073/pnas.2411809121 | |
| HMT-0961 | link | Faecalibacterium prausnitzii | Human host | Gut (Abundance: high) | Stool | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0416 | link | Fannyhessea sp. HMT-416 | Human host | Oral (Abundance: scarce) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0814 | link | Fannyhessea vaginae | Human host | Vaginal (Abundance: high) | Vaginal | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0935 | link | Fastidiosipila sanguinis | Human host | Oral (Abundance: scarce) | Saliva | Opportunistic Pathogen | Curator assignment | https://doi.org/10.1099/ijs.0.63327-0 https://doi.org/10.3389/fmicb.2025.1732083 |
| HMT-0929 | link | Fenollaria massiliensis | Human host | Gut (Abundance: low) | Gastrointestinal tract | Nasal (Abundance: low) | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | https://doi.org/10.3389/fmicb.2026.1862120 |
| HMT-0539 | link | Filifactor alocis | Human host | Oral (Abundance: medium) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0662 | link | Finegoldia magna | Human host | Skin (Abundance: medium) | Skin | Nasal (Abundance: medium) | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | |
| HMT-0320 | Flavitalea sp. HMT-320 | Environmental | Environmental (Abundance: scarce) | Soil or Water | Curator assignment | |||
| HMT-0363 | link | Fretibacterium fastidiosum | Human host | Oral (Abundance: medium) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | https://doi.org/10.1016/j.anaerobe.2020.102250 | |
| HMT-0358 | link | Fretibacterium sp. HMT-358 | Human host | Oral (Abundance: low) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0359 | link | Fretibacterium sp. HMT-359 | Human host | Oral (Abundance: low) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0360 | link | Fretibacterium sp. HMT-360 | Human host | Oral (Abundance: medium) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0361 | link | Fretibacterium sp. HMT-361 | Human host | Oral (Abundance: scarce) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0362 | link | Fretibacterium sp. HMT-362 | Human host | Oral (Abundance: low) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0452 | Fretibacterium sp. HMT-452 (DROPPED) | Unassigned | Unassigned | |||||
| HMT-0453 | Fretibacterium sp. HMT-453 (DROPPED) | Unassigned | Unassigned | |||||
| HMT-0420 | link | Fusobacterium animalis | Human host | Oral (Abundance: high) | Subgingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0860 | link | Fusobacterium gonidiaformans | Human host | Gut (Abundance: scarce) | Gastrointestinal tract | Oral (Abundance: scarce) | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | |
| HMT-0953 | link | Fusobacterium hwasookii | Human host | Oral (Abundance: medium) | Supragingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0689 | link | Fusobacterium naviforme | Human host | Unassigned (Abundance: scarce) | Unassigned | Curator assignment | ||
| HMT-0690 | link | Fusobacterium necrophorum | Human host | Oral (Abundance: scarce) | Palatine tonsils | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0698 | link | Fusobacterium nucleatum_sensu_stricto | Human host | Oral (Abundance: medium) | Subgingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0201 | link | Fusobacterium periodonticum | Human host | Oral (Abundance: high) | Throat | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0202 | link | Fusobacterium polymorphum | Human host | Oral (Abundance: medium) | Supragingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0429 | link | Fusobacterium pseudoperiodonticum | Human host | Oral (Abundance: high) | Throat | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0447 | link | Fusobacterium simiae | Human host | Oral (Abundance: low) | Subgingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0203 | link | Fusobacterium sp. HMT-203 | Human host | Oral (Abundance: medium) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0204 | link | Fusobacterium sp. HMT-204 | Human host | Oral (Abundance: medium) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0205 | link | Fusobacterium sp. HMT-205 | Human host | Oral (Abundance: low) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0248 | link | Fusobacterium sp. HMT-248 | Human host | Oral (Abundance: high) | Keratinized gingiva | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0370 | link | Fusobacterium sp. HMT-370 | Human host | Oral (Abundance: medium) | Throat | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0200 | link | Fusobacterium vincentii | Human host | Oral (Abundance: high) | Subgingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0464 | link | Fusobacterium watanabei | Human host | Oral (Abundance: medium) | Palatine tonsils | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0557 | link | Gallibacter brachus | Human host | Oral (Abundance: medium) | Subgingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0867 | link | Gardnerella leopoldii | Human host | Vaginal (Abundance: high) | Vaginal | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0846 | link | Gardnerella piotii | Human host | Vaginal (Abundance: high) | Vaginal | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0868 | link | Gardnerella swidsinskii | Human host | Vaginal (Abundance: high) | Vaginal | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0829 | link | Gardnerella vaginalis | Human host | Vaginal (Abundance: high) | Vaginal | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0555 | link | Gemella bergeri | Human host | Oral (Abundance: scarce) | Buccal mucosa | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0434 | link | Gemella haemolysans clade-434 | Human host | Oral (Abundance: high) | Hard palate | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0626 | link | Gemella haemolysans clade-626 | Human host | Oral (Abundance: high) | Hard palate | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0928 | link | Gemella massiliensis | Human host | Oral (Abundance: scarce) | not determined | Curator assignment | ||
| HMT-0046 | link | Gemella morbillorum | Human host | Oral (Abundance: medium) | Subgingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0757 | link | Gemella sanguinis | Human host | Oral (Abundance: medium) | Tongue dorsum | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0534 | link | Granulicatella adiacens | Human host | Oral (Abundance: medium) | Tongue dorsum | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0596 | link | Granulicatella elegans | Human host | Oral (Abundance: high) | Keratinized gingiva | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0316 | link | Haematobacter missouriensis | Environmental | Environmental (Abundance: scarce) | Soil or Water | Opportunistic Pathogen | Curator assignment | https://doi.org/10.1099/ijs.0.050351-0 |
| HMT-0535 | link | Haemophilus aegyptius | Pathogen | Pathogen (Abundance: scarce) | Frank pathogen | Curator assignment | ||
| HMT-0821 | link | Haemophilus ducreyi | Pathogen | Pathogen (Abundance: scarce) | Frank pathogen | Curator assignment | ||
| HMT-0851 | link | Haemophilus haemolyticus | Human host | Oral (Abundance: high) | Keratinized gingiva | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0641 | link | Haemophilus influenzae | Human host | Nasal (Abundance: scarce) | Nasal | Opportunistic Pathogen | Curator assignment | |
| HMT-0945 | link | Haemophilus parahaemolyticus | Human host | Oral (Abundance: medium) | Buccal mucosa | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0718 | link | Haemophilus parainfluenzae | Human host | Oral (Abundance: high) | Buccal mucosa | Nasal (Abundance: medium) | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | |
| HMT-0035 | link | Haemophilus paraphrohaemolyticus | Human host | Oral (Abundance: medium) | Buccal mucosa | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0946 | link | Haemophilus pittmaniae | Human host | Oral (Abundance: medium) | Palatine tonsils | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0036 | link | Haemophilus sp. HMT-036 | Human host | Oral (Abundance: high) | Keratinized gingiva | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0259 | Haemophilus sp. HMT-259 (DROPPED) | Unassigned | Unassigned | |||||
| HMT-0908 | Haemophilus sp. HMT-908 (DROPPED) | Unassigned | Unassigned | |||||
| HMT-0944 | link | Haemophilus sputorum | Human host | Oral (Abundance: medium) | Saliva | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0583 | link | Hallella dentalis | Human host | Oral (Abundance: medium) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0794 | link | Hallella multisaccharivorax | Human host | Oral (Abundance: low) | Dental Caries | Curator assignment | https://doi.org/10.1111/iej.14218 | |
| HMT-0315 | link | Hallella sp. HMT-315 | Human host | Oral (Abundance: low) | Palatine tonsils | Curator assignment and 16S rRNA gene data | ||
| HMT-0376 | link | Hallella sp. HMT-376 | Human host | Oral (Abundance: low) | Periodontitis | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0515 | link | Hallella sp. HMT-515 | Human host | Oral (Abundance: scarce) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0812 | link | Helicobacter pylori | Human host | Gut (Abundance: not determined) | Stomach | Oral, Nasal (Abundance: scarce) | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | |
| HMT-0962 | link | Hominimerdicola aceti | Human host | Gut (Abundance: high) | Stool | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0673 | link | Hornefia minuta | Human host | Oral (Abundance: low) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0694 | link | Hornefia nodatum | Human host | Oral (Abundance: medium) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0562 | link | Hoylesella buccalis | Human host | Vaginal (Abundance: medium) | Vaginal | Oral (Abundance: low) | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | |
| HMT-0600 | link | Hoylesella enoeca | Human host | Oral (Abundance: medium) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | https://doi.org/10.1099/00207713-44-4-599 | |
| HMT-0526 | link | Hoylesella koreensis | Human host | Oral (Abundance: medium) | Periodontitis | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0658 | link | Hoylesella loescheii | Human host | Oral (Abundance: medium) | Subgingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0665 | link | Hoylesella marshii | Human host | Oral (Abundance: low) | Periodontitis | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0299 | link | Hoylesella nanceiensis | Human host | Oral (Abundance: high) | Saliva | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0705 | link | Hoylesella oralis | Human host | Oral (Abundance: medium) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0303 | link | Hoylesella pleuritidis | Human host | Oral (Abundance: medium) | Subgingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0781 | link | Hoylesella saccharolytica | Human host | Oral (Abundance: medium) | Subgingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0795 | link | Hoylesella shahii | Human host | Oral (Abundance: medium) | Throat | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0301 | link | Hoylesella sp. HMT-301 | Human host | Oral (Abundance: low) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0317 | link | Hoylesella sp. HMT-317 | Human host | Oral (Abundance: medium) | Palatine tonsils | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0472 | Hoylesella sp. HMT-472 (DROPPED) | Unassigned | Unassigned | |||||
| HMT-0475 | link | Hoylesella sp. HMT-475 | Human host | Oral (Abundance: low) | Supragingival plaque | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0942 | link | Hoylesella sp. HMT-942 | Human host | Oral (Abundance: medium) | Keratinized gingiva | Curator assignment and 16S rRNA gene data | ||
| HMT-0982 | link | Ignavibacterium album | Taxonomic Reference | Reference (Abundance: scarce) | Taxonomic Reference | Curator assignment | ||
| HMT-0339 | link | Janibacter indicus | Environmental | Environmental (Abundance: scarce) | Soil or Water | Curator assignment | ||
| HMT-0243 | link | Jeotgalicoccus marinus | Environmental | Environmental (Abundance: scarce) | Soil or Water | Curator assignment | https://doi.org/10.1099/ijs.0.002451-0 https://doi.org/10.1111/j.1472-765X.2010.02811.x | |
| HMT-0635 | link | Johnsonella ignava | Human host | Oral (Abundance: low) | Subgingival plaque | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0166 | link | Johnsonella sp. HMT-166 | Human host | Oral (Abundance: scarce) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0777 | link | Jonquetella anthropi | Human host | Oral (Abundance: scarce) | Subgingival plaque | Opportunistic Pathogen | Curator assignment | https://doi.org/10.1099/ijs.0.65213-0 https://doi.org/10.1016/j.anaerobe.2020.102250 |
| HMT-0582 | link | Kingella denitrificans | Human host | Oral (Abundance: medium) | Supragingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0646 | link | Kingella kingae | Human host | Oral (Abundance: scarce) | Tongue dorsum | Opportunistic Pathogen | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | https://doi.org/10.1093/clinids/24.5.860 |
| HMT-0405 | link | Kingella negevensis | Human host | Oral (Abundance: low) | Palatine Tonsils | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | https://doi.org/10.1099/ijsem.0.001957 | |
| HMT-0706 | link | Kingella oralis | Human host | Oral (Abundance: high) | Supragingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0012 | link | Kingella sp. HMT-012 | Human host | Oral (Abundance: medium) | Supragingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0459 | link | Kingella sp. HMT-459 | Human host | Oral (Abundance: medium) | Hard palate | Curator assignment and 16S rRNA gene data | ||
| HMT-0932 | link | Kingella sp. HMT-932 | Human host | Oral (Abundance: low) | Hard palate | Curator assignment and 16S rRNA gene data | ||
| HMT-0153 | link | Klebsiella aerogenes | Human host | Nasal (Abundance: medium) | Nasal | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0731 | link | Klebsiella pneumoniae | Human host | Nasal (Abundance: medium) | Nasal | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0865 | link | Kluyvera ascorbata | Human host | Nasal (Abundance: low) | Nasal | Opportunistic Pathogen | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | https://doi.org/10.1086/322686 |
| HMT-0189 | link | Kocuria atrinae | Environmental | Environmental (Abundance: scarce) | Food | Curator assignment | ||
| HMT-0084 | link | Kocuria palustris | Environmental | Environmental (Abundance: scarce) | Soil or Water | Curator assignment | ||
| HMT-0197 | link | Kocuria rhizophila | Environmental | Environmental (Abundance: scarce) | Soil or Water | Curator assignment | ||
| HMT-0855 | link | Kytococcus sedentarius | Environmental | Environmental (Abundance: scarce) | Soil or Water | Opportunistic Pathogen | Curator assignment | |
| HMT-0460 | link | Lachnoanaerobaculum gingivalis | Human host | Oral (Abundance: low) | Tongue dorsum | Nasal (Abundance: low) | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | |
| HMT-0082 | link | Lachnoanaerobaculum orale | Human host | Oral (Abundance: medium) | Throat | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0494 | link | Lachnoanaerobaculum saburreum | Human host | Oral (Abundance: medium) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0083 | link | Lachnoanaerobaculum sp. HMT-083 | Human host | Oral (Abundance: medium) | Tongue dorsum | Nasal (Abundance: low) | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | |
| HMT-0089 | link | Lachnoanaerobaculum sp. HMT-089 | Human host | Oral (Abundance: scarce) | not determined | Curator assignment and 16S rRNA gene data | ||
| HMT-0430 | link | Lachnoanaerobaculum sp. HMT-430 | Human host | Oral (Abundance: medium) | Throat | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0441 | link | Lachnoanaerobaculum sp. HMT-441 | Human host | Oral (Abundance: low) | Supragingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0496 | link | Lachnoanaerobaculum sp. HMT-496 | Human host | Oral (Abundance: scarce) | Throat | Curator assignment and 16S rRNA gene data | ||
| HMT-0107 | link | Lachnoanaerobaculum umeaense | Human host | Oral (Abundance: low) | Tongue dorsum | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0924 | link | Lachnocurva vaginae | Human host | Vaginal (Abundance: high) | Vaginal | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0094 | link | Lachnospiraceae [G10] bacterium HMT-094 | Human host | Oral (Abundance: scarce) | not determined | Curator assignment and 16S rRNA gene data | ||
| HMT-0088 | link | Lachnospiraceae [G2] bacterium HMT-088 | Human host | Oral (Abundance: low) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0096 | link | Lachnospiraceae [G2] bacterium HMT-096 | Human host | Oral (Abundance: medium) | Tongue dorsum | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0100 | link | Lachnospiraceae [G3] bacterium HMT-100 | Human host | Oral (Abundance: medium) | Supragingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0086 | link | Lachnospiraceae [G7] bacterium HMT-086 | Human host | Oral (Abundance: scarce) | not determined | Curator assignment and 16S rRNA gene data | ||
| HMT-0163 | link | Lachnospiraceae [G7] bacterium HMT-163 | Human host | Oral (Abundance: scarce) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0500 | link | Lachnospiraceae [G8] bacterium HMT-500 | Human host | Oral (Abundance: medium) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0568 | link | Lacticaseibacillus casei | Environmental | Environmental (Abundance: scarce) | Food | Curator assignment | ||
| HMT-0716 | link | Lacticaseibacillus paracasei | Environmental | Environmental (Abundance: scarce) | Food | Curator assignment | ||
| HMT-0749 | link | Lacticaseibacillus rhamnosus | Environmental | Environmental (Abundance: scarce) | Food | Gastrointestinal Tract (Abundance: scarce) | Curator assignment | https://doi.org/10.1016/j.foodres.2023.113446 |
| HMT-0883 | link | Lactiplantibacillus pentosus | Environmental | Environmental (Abundance: scarce) | Food | Curator assignment | https://doi.org/10.3389/fmicb.2021.746659 https://doi.org/10.1007/s12602-024-10378-1 | |
| HMT-0861 | link | Lactiplantibacillus plantarum | Environmental | Environmental (Abundance: scarce) | Food | Curator assignment | ||
| HMT-0529 | link | Lactobacillus acidophilus | Environmental | Environmental (Abundance: scarce) | Food | Gastrointestinal Tract (Abundance: scarce) | Curator assignment | |
| HMT-0817 | link | Lactobacillus crispatus | Human host | Vaginal (Abundance: high) | Vaginal | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0615 | link | Lactobacillus gasseri | Human host | Vaginal (Abundance: high) | Vaginal | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0838 | link | Lactobacillus iners | Human host | Vaginal (Abundance: high) | Vaginal | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0839 | link | Lactobacillus jensenii | Human host | Vaginal (Abundance: high) | Vaginal | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0819 | link | Lactobacillus johnsonii | Human host | Gut (Abundance: scarce) | Gastrointestinal tract | Curator assignment | https://doi.org/10.1186/1471-2180-12-149 | |
| HMT-0461 | link | Lactobacillus ultunensis | Human host | Oral (Abundance: scarce) | Dental Caries | Gastrointestinal Tract (Abundance: scarce) | Curator assignment | https://doi.org/10.1099/ijs.0.63083-0 https://doi.org/10.1128/jcm.42.7.3128-3136.2004 |
| HMT-0804 | link | Lactococcus lactis | Environmental | Environmental (Abundance: low) | Food | Curator assignment | ||
| HMT-0723 | link | Lancefieldella parvula | Human host | Oral (Abundance: medium) | Tongue dorsum | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0750 | link | Lancefieldella rimae | Human host | Oral (Abundance: medium) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0199 | link | Lancefieldella sp. HMT-199 | Human host | Oral (Abundance: medium) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0409 | link | Lautropia dentalis | Human host | Oral (Abundance: medium) | Supragingival plaque | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0022 | link | Lautropia mirabilis | Human host | Oral (Abundance: high) | Supragingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0173 | link | Lawsonella clevelandensis | Human host | Nasal (Abundance: medium) | Nasal | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0881 | link | Lentilactobacillus buchneri | Environmental | Environmental (Abundance: scarce) | Food | Curator assignment | ||
| HMT-0424 | link | Lentilactobacillus kisonensis | Environmental | Environmental (Abundance: low) | Food | Curator assignment | ||
| HMT-0418 | link | Lentilactobacillus parafarraginis | Environmental | Environmental (Abundance: scarce) | Food | Curator assignment | ||
| HMT-0884 | link | Lentilactobacillus rapi | Environmental | Environmental (Abundance: scarce) | Food | Curator assignment | ||
| HMT-0025 | link | Leptothrix sp. HMT-025 | Environmental | Environmental (Abundance: scarce) | Soil or Water | Curator assignment | ||
| HMT-0266 | link | Leptothrix sp. HMT-266 | Human host | Unassigned (Abundance: scarce) | Unassigned | Curator assignment | ||
| HMT-0563 | link | Leptotrichia buccalis | Human host | Oral (Abundance: medium) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0224 | link | Leptotrichia hofstadii | Human host | Oral (Abundance: medium) | Supragingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0213 | link | Leptotrichia hongkongensis | Human host | Oral (Abundance: medium) | Subgingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0214 | link | Leptotrichia shahii | Human host | Oral (Abundance: medium) | Throat | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0218 | link | Leptotrichia sp. HMT-218 | Human host | Oral (Abundance: medium) | Throat | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0221 | link | Leptotrichia sp. HMT-221 | Human host | Oral (Abundance: medium) | Throat | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0223 | link | Leptotrichia sp. HMT-223 | Human host | Oral (Abundance: medium) | Subgingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0225 | link | Leptotrichia sp. HMT-225 | Human host | Oral (Abundance: medium) | Supragingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0417 | link | Leptotrichia sp. HMT-417 | Human host | Oral (Abundance: high) | Throat | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0462 | Leptotrichia sp. HMT-462 (DROPPED) | Unassigned | Unassigned | |||||
| HMT-0463 | link | Leptotrichia sp. HMT-463 | Human host | Oral (Abundance: low) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0498 | link | Leptotrichia sp. HMT-498 | Human host | Oral (Abundance: medium) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0847 | link | Leptotrichia sp. HMT-847 | Human host | Oral (Abundance: medium) | Throat | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0879 | link | Leptotrichia sp. HMT-879 | Human host | Oral (Abundance: medium) | Subgingival plaque | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0909 | link | Leptotrichia sp. HMT-909 | Human host | Oral (Abundance: low) | Supragingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0222 | link | Leptotrichia wadei | Human host | Oral (Abundance: medium) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0210 | Leptotrichiaceae [G1] sp. HMT-210 (DROPPED) | Unassigned | Unassigned | |||||
| HMT-0220 | Leptotrichiaceae [G1] sp. HMT-220 (DROPPED) | Unassigned | Unassigned | |||||
| HMT-0558 | link | Levilactobacillus brevis | Environmental | Environmental (Abundance: scarce) | Food | Curator assignment | ||
| HMT-0756 | link | Ligilactobacillus salivarius | Human host | Oral (Abundance: medium) | Periodontitis | Gastrointestinal Tract (Abundance: scarce) | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | https://doi.org/10.1128/AEM.01687-10 |
| HMT-0816 | link | Limosilactobacillus coleohominis | Human host | Vaginal (Abundance: low) | Vaginal | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0608 | link | Limosilactobacillus fermentum | Human host | Oral (Abundance: low) | Dental Caries | Environmental (Abundance: scarce) | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | https://doi.org/10.1099/jmm.0.45770-0 https://doi.org/10.1016/j.foodcont.2009.10.010 |
| HMT-0709 | link | Limosilactobacillus oris | Human host | Oral (Abundance: scarce) | Saliva | Curator assignment | https://doi.org/10.1099/ijsem.0.004107 | |
| HMT-0882 | link | Limosilactobacillus panis | Environmental | Environmental (Abundance: scarce) | Food | Curator assignment | ||
| HMT-0818 | link | Limosilactobacillus reuteri | Human host | Gut (Abundance: scarce) | Gastrointestinal tract | Environmental (Abundance: scarce) | Curator assignment | https://doi.org/10.1016/S0172-5564(80)80007-8 |
| HMT-0938 | Limosilactobacillus reuteri (DROPPED) | Unassigned | Unassigned | |||||
| HMT-0052 | link | Limosilactobacillus sp. HMT-052 | Human host | Oral (Abundance: scarce) | not determined | Curator assignment and 16S rRNA gene data | ||
| HMT-0051 | link | Limosilactobacillus vaginalis | Human host | Vaginal (Abundance: medium) | Vaginal | Oral (Abundance: medium) | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | |
| HMT-0825 | link | Listeria monocytogenes | Environmental | Environmental (Abundance: scarce) | Soil or Water | Curator assignment | ||
| HMT-0614 | link | Lysinibacillus fusiformis | Environmental | Environmental (Abundance: scarce) | Soil or Water | Curator assignment | ||
| HMT-0841 | link | Megasphaera lornae | Human host | Vaginal (Abundance: medium) | Vaginal | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0122 | link | Megasphaera micronuciformis | Human host | Oral (Abundance: high) | Throat | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0983 | link | Melioribacter roseus | Taxonomic Reference | Reference (Abundance: scarce) | Taxonomic Reference | Curator assignment | ||
| HMT-0659 | link | Mesorhizobium japonicum | Environmental | Environmental (Abundance: scarce) | Soil or Water | Curator assignment | ||
| HMT-0561 | Metamycoplasma buccale | Human host | Oral (Abundance: scarce) | not determined | Curator assignment and 16S rRNA gene data | |||
| HMT-0606 | link | Metamycoplasma faucium | Human host | Oral (Abundance: low) | Palatine tonsils | Curator assignment and 16S rRNA gene data | ||
| HMT-0632 | link | Metamycoplasma hominis | Human host | Vaginal (Abundance: low) | Vaginal | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0704 | link | Metamycoplasma orale | Human host | Oral (Abundance: low) | Saliva | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0754 | link | Metamycoplasma salivarium | Human host | Oral (Abundance: medium) | Subgingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0815 | link | Methanobrevibacter oralis | Human host | Oral (Abundance: low) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0330 | link | Micavibrio aeruginosavorus | Environmental | Environmental (Abundance: scarce) | Soil or Water | Curator assignment | https://doi.org/10.1371/journal.pone.0161242 | |
| HMT-0185 | link | Microbacterium ginsengisoli | Environmental | Environmental (Abundance: scarce) | Soil or Water | Curator assignment | ||
| HMT-0186 | link | Microbacterium sp. HMT-186 | Environmental | Environmental (Abundance: scarce) | Soil or Water | Curator assignment | ||
| HMT-0087 | link | Micrococcus luteus | Environmental | Environmental (Abundance: low) | Soil or Water | Opportunistic Pathogen | Curator assignment | |
| HMT-0684 | link | Mitsuokella multacida | Human host | Gut (Abundance: scarce) | Gastrointestinal tract | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0131 | link | Mitsuokella sp. HMT-131 | Human host | Oral (Abundance: low) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0521 | link | Mitsuokella sp. HMT-521 | Human host | Oral (Abundance: medium) | Palatine tonsils | Curator assignment and 16S rRNA gene data | ||
| HMT-0830 | link | Mobiluncus mulieris | Human host | Vaginal (Abundance: scarce) | Vaginal | Curator assignment | ||
| HMT-0593 | link | Mogibacterium diversum | Human host | Oral (Abundance: medium) | Throat | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0691 | link | Mogibacterium neglectum | Human host | Oral (Abundance: low) | Subgingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0742 | link | Mogibacterium pumilum | Human host | Oral (Abundance: low) | Periodontitis | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | https://doi.org/10.1099/00207713-50-2-679 | |
| HMT-0042 | link | Mogibacterium timidum | Human host | Oral (Abundance: medium) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0008 | link | Mogibacterium vescum | Human host | Oral (Abundance: low) | Throat | Curator assignment and 16S rRNA gene data | ||
| HMT-0504 | link | Mollicutes [O1 F1 G1] bacterium HMT-504 | Human host | Oral (Abundance: scarce) | not determined | Curator assignment and 16S rRNA gene data | ||
| HMT-0906 | link | Mollicutes [O2 F2 G2] bacterium HMT-906 | Human host | Oral (Abundance: scarce) | Palatine tonsils | Curator assignment and 16S rRNA gene data | ||
| HMT-0833 | link | Moraxella catarrhalis | Human host | Nasal (Abundance: medium) | Nasal | Oral (Abundance: scarce) | Curator assignment (high abundance in 2 throat samples in Eren et al. 2014) and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | |
| HMT-0154 | link | Moraxella lincolnii | Human host | Nasal (Abundance: medium) | Nasal | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0098 | link | Moraxella nonliquefaciens | Human host | Nasal (Abundance: medium) | Nasal | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0711 | link | Moraxella osloensis | Human host | Nasal (Abundance: low) | Nasal | Skin (Abundance: low) | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | https://doi.org/10.1099/00207713-17-2-127 |
| HMT-0276 | link | Moraxella sp. HMT-276 | Human host | Oral (Abundance: scarce) | Supragingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0097 | link | Moryella sp. HMT-097 | Human host | Oral (Abundance: medium) | Throat | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0823 | link | Mycobacterium leprae | Pathogen | Pathogen (Abundance: scarce) | Frank pathogen | Curator assignment | ||
| HMT-0822 | link | Mycobacterium tuberculosis | Pathogen | Pathogen (Abundance: scarce) | Frank pathogen | Curator assignment | ||
| HMT-0692 | link | Mycolicibacterium neoaurum | Environmental | Environmental (Abundance: scarce) | Soil or Water | Opportunistic Pathogen | Curator assignment | |
| HMT-0616 | link | Mycoplasmoides genitalium | Pathogen | Pathogen (Abundance: scarce) | Frank pathogen | Curator assignment | ||
| HMT-0732 | link | Mycoplasmoides pneumoniae | Pathogen | Pathogen (Abundance: scarce) | Frank pathogen | Curator assignment | ||
| HMT-0607 | link | Mycoplasmopsis fermentans | Human host | Oral (Abundance: scarce) | not determined | Curator assignment | ||
| HMT-0656 | link | Mycoplasmopsis lipophila | Human host | Oral (Abundance: scarce) | Palatine tonsils | Curator assignment and 16S rRNA gene data | ||
| HMT-0870 | link | Nanogingivalis gingivitcus | Human host | Oral (Abundance: medium) | Keratinized gingiva | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0399 | link | Nanogingivalis sp. HMT-399 | Human host | Oral (Abundance: medium) | Tongue dorsum | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0400 | link | Nanogingivalis sp. HMT-400 | Human host | Oral (Abundance: medium) | Saliva | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0401 | link | Nanogingivalis sp. HMT-401 | Human host | Oral (Abundance: medium) | Keratinized gingiva | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0356 | link | Nanoperiomorbus periodonticus | Human host | Oral (Abundance: high) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0437 | Nanoperiomorbus sp. HMT-437 (DROPPED) | Unassigned | Unassigned | |||||
| HMT-0957 | link | Nanosynbacter featherlites | Human host | Oral (Abundance: medium) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0488 | link | Nanosynbacter fur | Human host | Oral (Abundance: medium) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0952 | link | Nanosynbacter lyticus | Human host | Oral (Abundance: medium) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0352 | link | Nanosynbacter sp. HMT-352 | Human host | Oral (Abundance: high) | Saliva | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0353 | link | Nanosynbacter sp. HMT-353 | Human host | Oral (Abundance: medium) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0367 | link | Nanosyncoccus alces | Human host | Oral (Abundance: scarce) | Saliva | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0371 | link | Nanosyncoccus nanoralicus | Human host | Oral (Abundance: medium) | Saliva | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0351 | link | Nanosyncoccus sp. HMT-351 | Human host | Oral (Abundance: high) | Saliva | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0364 | link | Nanosyncoccus sp. HMT-364 | Human host | Oral (Abundance: medium) | Saliva | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0013 | link | Neisseria bacilliformis | Human host | Oral (Abundance: medium) | Supragingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0956 | link | Neisseria cinerea | Human host | Oral (Abundance: high) | Keratinized gingiva | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0598 | link | Neisseria elongata | Human host | Oral (Abundance: high) | Supragingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0609 | link | Neisseria flava | Human host | Oral (Abundance: medium) | Supragingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0610 | link | Neisseria flavescens | Human host | Oral (Abundance: high) | Throat | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0621 | link | Neisseria gonorrhoeae | Pathogen | Pathogen (Abundance: low) | Frank pathogen | Curator assignment | ||
| HMT-0649 | link | Neisseria lactamica | Human host | Oral (Abundance: low) | Tongue dorsum | Skin (Abundance: low) | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | https://doi.org/10.1128/iai.73.4.2424-2432.2005 |
| HMT-0099 | link | Neisseria macacae | Environmental | Environmental (Abundance: low) | Animal host | Opportunistic Pathogen | Curator assignment | |
| HMT-0669 | link | Neisseria meningitidis | Human host | Oral (Abundance: low) | Throat | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0682 | link | Neisseria mucosa | Human host | Oral (Abundance: medium) | Supragingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0014 | link | Neisseria oralis | Human host | Oral (Abundance: medium) | Subgingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0101 | link | Neisseria perflava | Human host | Oral (Abundance: high) | Throat | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0729 | Neisseria pharyngis (DROPPED) | Unassigned | Unassigned | |||||
| HMT-0737 | link | Neisseria polysaccharea | Human host | Oral (Abundance: medium) | Keratinized gingiva | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0764 | link | Neisseria sicca | Human host | Oral (Abundance: high) | Supragingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0015 | Neisseria sp. HMT-015 (DROPPED) | Unassigned | Unassigned | |||||
| HMT-0016 | Neisseria sp. HMT-016 (DROPPED) | Unassigned | Unassigned | |||||
| HMT-0018 | link | Neisseria sp. HMT-018 | Human host | Oral (Abundance: medium) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0020 | link | Neisseria sp. HMT-020 | Human host | Oral (Abundance: low) | Supragingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0499 | link | Neisseria sp. HMT-499 | Human host | Oral (Abundance: scarce) | Hard palate | Curator assignment and 16S rRNA gene data | ||
| HMT-0523 | Neisseria sp. HMT-523 | Human host | Oral (Abundance: scarce) | not determined | Curator assignment and 16S rRNA gene data | |||
| HMT-0476 | link | Neisseria subflava | Human host | Oral (Abundance: high) | Throat | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0092 | link | Neisseria weaveri | Environmental | Environmental (Abundance: low) | Animal host | Curator assignment | ||
| HMT-0174 | link | Neisseriaceae [G1] bacterium HMT-174 | Human host | Nasal (Abundance: medium) | Nasal | Skin (Abundance: medium) | Curator assignment and 16S rRNA gene data | |
| HMT-0327 | link | Neisseriaceae [G1] bacterium HMT-327 | Human host | Nasal (Abundance: medium) | Nasal | Skin (Abundance: medium) | Curator assignment and 16S rRNA gene data | |
| HMT-0006 | link | Novosphingobium humi | Environmental | Environmental (Abundance: scarce) | Soil or Water | Curator assignment | ||
| HMT-0342 | link | Novosphingobium panipatense | Environmental | Environmental (Abundance: scarce) | Soil or Water | Curator assignment | ||
| HMT-0516 | link | Odoribacter sp. HMT-516 | Human host | Oral (Abundance: scarce) | Palatine tonsils | Curator assignment and 16S rRNA gene data | ||
| HMT-0280 | link | Odoribacteraceae [G3] bacterium HMT-280 | Human host | Oral (Abundance: scarce) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0281 | link | Odoribacteraceae [G3] bacterium HMT-281 | Human host | Oral (Abundance: scarce) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0365 | link | Odoribacteraceae [G3] bacterium HMT-365 | Human host | Oral (Abundance: low) | Palatine tonsils | Curator assignment and 16S rRNA gene data | ||
| HMT-0436 | link | Odoribacteraceae [G3] bacterium HMT-436 | Human host | Oral (Abundance: scarce) | not determined | Curator assignment and 16S rRNA gene data | ||
| HMT-0503 | link | Odoribacteraceae [G3] bacterium HMT-503 | Human host | Oral (Abundance: scarce) | Palatine tonsils | Curator assignment and 16S rRNA gene data | ||
| HMT-0899 | Odoribacteraceae [G3] bacterium HMT-899 | Human host | Unassigned (Abundance: scarce) | Unassigned | Curator assignment | |||
| HMT-0509 | Odoribacteraceae [G4] bacterium HMT-509 | Human host | Unassigned (Abundance: scarce) | Unassigned | Curator assignment | |||
| HMT-0505 | link | Odoribacteraceae [G5] bacterium HMT-505 | Human host | Oral (Abundance: low) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0507 | link | Odoribacteraceae [G5] bacterium HMT-507 | Human host | Oral (Abundance: scarce) | Palatine tonsils | Curator assignment and 16S rRNA gene data | ||
| HMT-0511 | link | Odoribacteraceae [G5] bacterium HMT-511 | Human host | Oral (Abundance: medium) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0911 | link | Odoribacteraceae [G7] bacterium HMT-911 | Human host | Oral (Abundance: scarce) | not determined | Curator assignment and 16S rRNA gene data | ||
| HMT-0810 | link | Olegusella sp. HMT-810 | Human host | Vaginal (Abundance: scarce) | Vaginal | Curator assignment | ||
| HMT-0809 | link | Olsenella phocaeensis | Human host | Oral (Abundance: scarce) | Supragingival plaque | Gastrointestinal Tract (Abundance: scarce) | Curator assignment | https://doi.org/10.3390/microbiolres16120251 |
| HMT-0806 | link | Olsenella profusa | Human host | Oral (Abundance: scarce) | not determined | Curator assignment | ||
| HMT-0807 | link | Olsenella sp. HMT-807 | Human host | Oral (Abundance: medium) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0939 | link | Olsenella sp. HMT-939 | Human host | Oral (Abundance: scarce) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0038 | link | Olsenella uli | Human host | Oral (Abundance: medium) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0108 | link | Oribacterium asaccharolyticum | Human host | Oral (Abundance: medium) | Saliva | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0934 | link | Oribacterium parvum | Human host | Oral (Abundance: medium) | Throat | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0457 | link | Oribacterium sinus | Human host | Oral (Abundance: medium) | Throat | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0078 | link | Oribacterium sp. HMT-078 | Human host | Oral (Abundance: medium) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0102 | link | Oribacterium sp. HMT-102 | Human host | Oral (Abundance: low) | Periodontitis | Gastrointestinal Tract (Abundance: scarce) | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | |
| HMT-0372 | Oribacterium sp. HMT-372 (DROPPED) | Unassigned | Unassigned | |||||
| HMT-0028 | link | Oryzomicrobium terrae | Environmental | Environmental (Abundance: scarce) | Soil or Water | Curator assignment | ||
| HMT-0894 | link | Ottowia sp. HMT-894 | Human host | Oral (Abundance: medium) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0211 | link | Paenacidovorax caeni | Environmental | Environmental (Abundance: low) | Soil or Water | Curator assignment | ||
| HMT-0921 | link | Paenibacillus glucanolyticus | Environmental | Environmental (Abundance: scarce) | Soil or Water | Curator assignment | ||
| HMT-0786 | link | Paenibacillus phoenicis | Environmental | Environmental (Abundance: scarce) | Soil or Water | Curator assignment | ||
| HMT-0048 | link | Paenibacillus typhae | Environmental | Environmental (Abundance: scarce) | Soil or Water | Curator assignment | ||
| HMT-0274 | link | Paludibacteraceae [G1] bacterium HMT-274 | Human host | Oral (Abundance: high) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0973 | link | Parabacteroides distasonis | Human host | Gut (Abundance: high) | Stool | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0974 | link | Parabacteroides merdae | Human host | Gut (Abundance: high) | Stool | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0104 | link | Paracoccus yeei | Environmental | Environmental (Abundance: scarce) | Soil or Water | Opportunistic Pathogen | Curator assignment | |
| HMT-0586 | link | Parascardovia denticolens | Human host | Oral (Abundance: low) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0111 | link | Parvimonas micra | Human host | Oral (Abundance: medium) | Subgingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0110 | link | Parvimonas sp. HMT-110 | Human host | Oral (Abundance: medium) | Subgingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0393 | link | Parvimonas sp. HMT-393 | Human host | Oral (Abundance: low) | Subgingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0348 | link | Parvisynbacter sp. HMT-348 | Human host | Oral (Abundance: medium) | Supragingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0390 | link | Parvisynbacter sp. HMT-390 | Human host | Oral (Abundance: low) | Subgingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0871 | link | Patescibacteria [C1 O1 F1 G1] bacterium HMT-871 | Human host | Oral (Abundance: low) | Supragingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0872 | link | Patescibacteria [C1 O1 F1 G1] bacterium HMT-872 | Human host | Oral (Abundance: medium) | Supragingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0873 | link | Patescibacteria [C1 O1 F1 G2] bacterium HMT-873 | Human host | Oral (Abundance: medium) | Subgingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0996 | Patescibacteria [C1 O1 F1 G2] bacterium HMT-996 (DROPPED) | Unassigned | Unassigned | |||||
| HMT-0997 | Patescibacteria [C1 O1 F1 G2] bacterium HMT-997 (DROPPED) | Unassigned | Unassigned | |||||
| HMT-0318 | Pedobacter sp. HMT-318 | Environmental | Environmental (Abundance: scarce) | Soil or Water | Curator assignment | |||
| HMT-0321 | Pedobacter sp. HMT-321 | Environmental | Environmental (Abundance: scarce) | Soil or Water | Curator assignment | |||
| HMT-0933 | Pedobacter sp. HMT-933 | Environmental | Environmental (Abundance: scarce) | Soil or Water | Curator assignment | |||
| HMT-0848 | link | Peptidiphaga gingivicola | Human host | Oral (Abundance: medium) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0183 | link | Peptidiphaga sp. HMT-183 | Human host | Oral (Abundance: high) | Subgingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0796 | link | Peptoanaerobacter margaretiae | Human host | Oral (Abundance: medium) | Subgingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0922 | link | Peptoanaerobacter sp. HMT-922 | Human host | Oral (Abundance: low) | Palatine tonsils | Curator assignment and 16S rRNA gene data | ||
| HMT-0081 | link | Peptoanaerobacter stomatis | Human host | Oral (Abundance: low) | Subgingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0106 | Peptoanaerobacter yurii subsp. schtitka | Human host | Oral (Abundance: no data) | not determined | Curator assignment and 16S rRNA gene data | |||
| HMT-0377 | Peptoanaerobacter yurii subsps. yurii | Human host | Oral (Abundance: no data) | not determined | Curator assignment and 16S rRNA gene data | |||
| HMT-0167 | link | Peptococcus sp. HMT-167 | Human host | Oral (Abundance: low) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0168 | link | Peptococcus sp. HMT-168 | Human host | Oral (Abundance: low) | Palatine tonsils | Curator assignment and 16S rRNA gene data | ||
| HMT-0113 | link | Peptoniphilaceae [G1] bacterium HMT-113 | Human host | Oral (Abundance: low) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0790 | link | Peptoniphilaceae [G2] bacterium HMT-790 | Human host | Oral (Abundance: scarce) | Buccal mucosa | Curator assignment and 16S rRNA gene data | ||
| HMT-0548 | link | Peptoniphilus asaccharolyticus | Human host | Gut (Abundance: low) | Stool | Vaginal (Abundance: scarce) | Curator assignment | https://doi.org/10.1016/j.anaerobe.2019.07.001 https://doi.org/10.1099/00207713-51-4-1521 https://doi.org/10.1136/bcr-2017-219969 |
| HMT-0187 | link | Peptoniphilus grossensis | Human host | Nasal (Abundance: scarce) | Nasal | Gastrointestinal Tract (Abundance: scarce) | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | https://doi.org/10.4056/sigs.3076460 |
| HMT-0109 | link | Peptoniphilus harei | Human host | Skin (Abundance: low) | Skin | Vaginal (Abundance: low) | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | https://doi.org/10.1099/00207713-51-4-1521 |
| HMT-0840 | link | Peptoniphilus indolicus | Human host | Oral (Abundance: scarce) | Subgingival plaque | Opportunistic Pathogen | Curator assignment | https://doi.org/10.1099/00207713-51-4-1521 https://doi.org/10.1111/j.1399-302X.2005.00255.x |
| HMT-0836 | link | Peptoniphilus lacrimalis | Human host | Vaginal (Abundance: low) | Vaginal | Nasal (Abundance: low) | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | https://doi.org/10.1099/00207713-51-4-1521 https://doi.org/10.1099/00207713-42-4-602 |
| HMT-0648 | Peptoniphilus Lacrimalis-DROPPED (DROPPED) | Unassigned | Unassigned | |||||
| HMT-0784 | link | Peptoniphilus lacydonensis | Human host | Nasal (Abundance: medium) | Nasal | Skin (Abundance: medium) | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | https://doi.org/10.1016/j.nmni.2018.02.007 |
| HMT-0542 | link | Peptostreptococcus anaerobius | Human host | Vaginal (Abundance: scarce) | Vaginal | Oral (Abundance: scarce) | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | |
| HMT-0112 | link | Peptostreptococcus stomatis | Human host | Oral (Abundance: medium) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0272 | link | Phocaeicola abscessus | Human host | Oral (Abundance: medium) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0975 | link | Phocaeicola dorei | Human host | Gut (Abundance: high) | Stool | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0976 | link | Phocaeicola massiliensis | Human host | Gut (Abundance: high) | Stool | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0977 | link | Phocaeicola plebeius | Human host | Gut (Abundance: high) | Stool | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0978 | link | Phocaeicola vulgatus | Human host | Gut (Abundance: high) | Stool | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0547 | link | Porphyromonas asaccharolytica | Human host | Vaginal (Abundance: low) | Vaginal | Gastrointestinal Tract (Abundance: low) | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | https://doi.org/10.1099/00207713-38-1-128 |
| HMT-0283 | link | Porphyromonas catoniae | Human host | Oral (Abundance: medium) | Subgingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0273 | link | Porphyromonas endodontalis | Human host | Oral (Abundance: high) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0619 | link | Porphyromonas gingivalis | Human host | Oral (Abundance: high) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0279 | link | Porphyromonas pasteri | Human host | Oral (Abundance: high) | Saliva | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0275 | link | Porphyromonas sp. HMT-275 | Human host | Oral (Abundance: low) | Saliva | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0277 | link | Porphyromonas sp. HMT-277 | Human host | Oral (Abundance: low) | Supragingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0278 | link | Porphyromonas sp. HMT-278 | Human host | Oral (Abundance: medium) | Subgingival plaque | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0284 | link | Porphyromonas sp. HMT-284 | Human host | Oral (Abundance: medium) | Supragingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0285 | Porphyromonas sp. HMT-285 (DROPPED) | Unassigned | Unassigned | |||||
| HMT-0395 | Porphyromonas sp. HMT-395 (DROPPED) | Unassigned | Unassigned | |||||
| HMT-0930 | link | Porphyromonas sp. HMT-930 | Human host | Oral (Abundance: high) | Attached keratinized gingiva | Curator assignment and 16S rRNA gene data | ||
| HMT-0785 | link | Porphyromonas uenonis | Human host | Vaginal (Abundance: medium) | Vaginal | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0797 | link | Prevotella amnii | Human host | Vaginal (Abundance: medium) | Vaginal | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0943 | link | Prevotella aurantiaca | Human host | Oral (Abundance: medium) | Tongue dorsum | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0556 | link | Prevotella bivia | Human host | Vaginal (Abundance: low) | Vaginal | Oral (Abundance: low) | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | https://doi.org/10.1128/spectrum.00562-24 https://doi.org/10.1093/infdis/jiy705 |
| HMT-0979 | link | Prevotella copri | Human host | Gut (Abundance: high) | Stool | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0291 | link | Prevotella denticola | Human host | Oral (Abundance: high) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0782 | link | Prevotella fusca | Human host | Oral (Abundance: low) | Throat | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0298 | link | Prevotella histicola | Human host | Oral (Abundance: high) | Palatine tonsils | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0820 | link | Prevotella illustrans | Human host | Oral (Abundance: low) | Periodontitis | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0643 | link | Prevotella intermedia | Human host | Oral (Abundance: high) | Palatine tonsils | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0313 | link | Prevotella jejuni | Human host | Oral (Abundance: high) | Throat | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0469 | link | Prevotella melaninogenica | Human host | Oral (Abundance: high) | Saliva | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0378 | link | Prevotella micans | Human host | Oral (Abundance: low) | Periodontitis | Nasal (Abundance: low) | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | |
| HMT-0685 | link | Prevotella multiformis | Human host | Oral (Abundance: medium) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0693 | link | Prevotella nigrescens | Human host | Oral (Abundance: high) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0714 | link | Prevotella pallens | Human host | Oral (Abundance: high) | Throat | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0885 | link | Prevotella scopos | Human host | Oral (Abundance: medium) | Throat | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0292 | Prevotella sp. HMT-292 (DROPPED) | Unassigned | Unassigned | |||||
| HMT-0293 | Prevotella sp. HMT-293 (DROPPED) | Unassigned | Unassigned | |||||
| HMT-0296 | Prevotella sp. HMT-296 (DROPPED) | Unassigned | Unassigned | |||||
| HMT-0304 | link | Prevotella sp. HMT-304 | Human host | Oral (Abundance: medium) | Palatine tonsils | Curator assignment and 16S rRNA gene data | ||
| HMT-0310 | Prevotella sp. HMT-310 (DROPPED) | Unassigned | Unassigned | |||||
| HMT-0314 | link | Prevotella sp. HMT-314 | Human host | Oral (Abundance: medium) | Palatine tonsils | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0396 | link | Prevotella sp. HMT-396 | Human host | Oral (Abundance: low) | Saliva | Curator assignment and 16S rRNA gene data | ||
| HMT-0410 | link | Prevotella sp. HMT-410 | Human host | Oral (Abundance: medium) | Throat | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0798 | link | Prevotella timonensis | Human host | Vaginal (Abundance: medium) | Vaginal | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0572 | link | Prevotella veroralis | Human host | Oral (Abundance: medium) | Palatine tonsils | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0306 | link | Prevotella vespertina | Human host | Oral (Abundance: medium) | Throat | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0915 | link | Propionibacteriaceae [G1] bacterium HMT-915 | Human host | Oral (Abundance: scarce) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0191 | link | Propionibacterium acidifaciens | Human host | Oral (Abundance: low) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0676 | link | Proteus mirabilis | Environmental | Environmental (Abundance: scarce) | Soil or Water | Opportunistic Pathogen | Curator assignment | |
| HMT-0845 | link | Pseudoleptotrichia goodfellowii | Human host | Oral (Abundance: medium) | Subgingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0212 | link | Pseudoleptotrichia sp. HMT-212 | Human host | Oral (Abundance: medium) | Supragingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0215 | link | Pseudoleptotrichia sp. HMT-215 | Human host | Oral (Abundance: medium) | Throat | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0217 | link | Pseudoleptotrichia sp. HMT-217 | Human host | Oral (Abundance: low) | Supragingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0219 | link | Pseudoleptotrichia sp. HMT-219 | Human host | Oral (Abundance: medium) | Supragingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0392 | link | Pseudoleptotrichia sp. HMT-392 | Human host | Oral (Abundance: medium) | Supragingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0536 | link | Pseudomonas aeruginosa | Environmental | Environmental (Abundance: scarce) | Opportunistic Pathogen | Curator assignment | ||
| HMT-0612 | link | Pseudomonas fluorescens | Environmental | Environmental (Abundance: scarce) | Soil or Water | Oral (Abundance: scarce) | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | https://doi.org/10.1128/cmr.00044-14 |
| HMT-0344 | link | Pseudomonas luteola | Environmental | Environmental (Abundance: low) | Soil or Water | Opportunistic Pathogen | Curator assignment | |
| HMT-0740 | link | Pseudomonas oleovorans | Environmental | Environmental (Abundance: scarce) | Soil or Water | Curator assignment | ||
| HMT-0834 | link | Pseudomonas otitidis | Human host | Skin (Abundance: scarce) | Ear | Curator assignment | ||
| HMT-0032 | link | Pseudomonas sp. HMT-032 | Environmental | Environmental (Abundance: scarce) | Soil or Water | Curator assignment | ||
| HMT-0538 | link | Pseudoramibacter alactolyticus | Human host | Oral (Abundance: medium) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0357 | link | Pyramidobacter piscolens | Human host | Oral (Abundance: scarce) | Periodontitis | Gastrointestinal Tract (Abundance: scarce) | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | https://doi.org/10.1016/j.anaerobe.2020.102250 https://doi.org/10.1099/ijs.0.000364-0 |
| HMT-0854 | link | Ralstonia pickettii | Human host | Oral (Abundance: scarce) | not determined | Curator assignment | ||
| HMT-0406 | link | Ralstonia sp. HMT-406 | Human host | Oral (Abundance: medium) | not determined | Curator assignment and 16S rRNA gene data | ||
| HMT-0857 | link | Rhodobacter capsulatus | Environmental | Environmental (Abundance: scarce) | Soil or Water | Curator assignment | ||
| HMT-0652 | Rhodopseudomonas telluris (DROPPED) | Unassigned | Unassigned | |||||
| HMT-0322 | link | Riemerella sp. HMT-322 | Human host | Oral (Abundance: high) | Supragingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0244 | link | Roseomonas gilardii | Environmental | Environmental (Abundance: scarce) | Soil or Water | Curator assignment | ||
| HMT-0245 | link | Roseomonas mucosa | Human host | Skin (Abundance: scarce) | Skin | Opportunistic Pathogen | Curator assignment | https://doi.org/10.1016/j.cmi.2016.05.024 |
| HMT-0188 | link | Rothia aeria | Human host | Oral (Abundance: high) | Supragingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0587 | link | Rothia dentocariosa | Human host | Oral (Abundance: high) | Supragingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0147 | link | Rothia mucilaginosa clade-147 | Human host | Oral (Abundance: high) | Tongue dorsum | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0681 | link | Rothia mucilaginosa clade-681 | Human host | Oral (Abundance: high) | Hard palate | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0075 | link | Ruminococcaceae [G1] bacterium HMT-075 | Human host | Oral (Abundance: high) | Saliva | Curator assignment and 16S rRNA gene data | ||
| HMT-0085 | link | Ruminococcaceae [G2] bacterium HMT-085 | Human host | Oral (Abundance: medium) | Saliva | Curator assignment and 16S rRNA gene data | ||
| HMT-0366 | link | Ruminococcaceae [G3] bacterium HMT-366 | Human host | Oral (Abundance: scarce) | Throat | Curator assignment and 16S rRNA gene data | ||
| HMT-0381 | Ruminococcaceae [G3] bacterium HMT-381 | Human host | Unassigned (Abundance: scarce) | Unassigned | Curator assignment | |||
| HMT-0350 | link | Saccharimonadales [F1 G1] bacterium HMT-350 | Human host | Oral (Abundance: medium) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0986 | link | Saccharimonadales [F2 G1] bacterium HMT-986 | Taxonomic Reference | Reference (Abundance: scarce) | Taxonomic Reference | Curator assignment | ||
| HMT-0989 | link | Saccharimonadales [F2 G1] bacterium HMT-989 | Taxonomic Reference | Reference (Abundance: scarce) | Taxonomic Reference | Curator assignment | ||
| HMT-0355 | link | Saccharimonadales [F3 G1] bacterium HMT-355 | Human host | Oral (Abundance: low) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0954 | Saccharimonadales [F4 G1] bacterium HMT-954 | Human host | Oral (Abundance: scarce) | Supragingival plaque | Curator assignment and 16S rRNA gene data | |||
| HMT-0391 | link | Saccharimonadales [F5 G1] bacterium HMT-391 | Human host | Oral (Abundance: low) | Supragingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0987 | Saccharimonadota [C1 O1 F1 G1] bacterium HMT-987 (DROPPED) | Unassigned | Unassigned | |||||
| HMT-0988 | link | Saccharimonas aalborgensis | Taxonomic Reference | Reference (Abundance: scarce) | Taxonomic Reference | Curator assignment | ||
| HMT-0955 | link | Saccharimonas sicarius | Human host | Oral (Abundance: medium) | Supragingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0346 | link | Saccharimonas sp. HMT-346 | Human host | Oral (Abundance: high) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0347 | link | Saccharimonas sp. HMT-347 | Human host | Oral (Abundance: medium) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0349 | link | Saccharimonas sp. HMT-349 | Human host | Oral (Abundance: high) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0394 | link | Saccharimonas sp. HMT-394 | Human host | Oral (Abundance: high) | Supragingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0397 | link | Saccharimonas sp. HMT-397 | Human host | Oral (Abundance: medium) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0869 | link | Saccharimonas sp. HMT-869 | Human host | Oral (Abundance: medium) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0856 | link | Sanguibacter keddieii | Environmental | Environmental (Abundance: scarce) | Animal host | Curator assignment | ||
| HMT-0642 | link | Scardovia inopinata | Human host | Oral (Abundance: scarce) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0195 | link | Scardovia wiggsiae | Human host | Oral (Abundance: medium) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0850 | link | Schaalia cardiffensis | Human host | Oral (Abundance: low) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0710 | link | Schaalia dentiphila | Human host | Oral (Abundance: medium) | Tongue dorsum | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0617 | link | Schaalia georgiae | Human host | Oral (Abundance: medium) | Subgingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0178 | link | Schaalia hongkongensis | Human host | Oral (Abundance: medium) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0181 | link | Schaalia lingnae | Human host | Oral (Abundance: medium) | Tongue dorsum | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0671 | link | Schaalia meyeri | Human host | Oral (Abundance: low) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0701 | link | Schaalia odontolytica | Human host | Oral (Abundance: high) | Tongue dorsum | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0172 | link | Schaalia sp. HMT-172 | Human host | Oral (Abundance: high) | Tongue dorsum | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0180 | link | Schaalia sp. HMT-180 | Human host | Oral (Abundance: medium) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0240 | link | Schaalia sp. HMT-240 | Human host | Oral (Abundance: high) | Tongue dorsum | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0404 | link | Schaalia sp. HMT-404 | Human host | Oral (Abundance: medium) | Throat | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0877 | Schaalia sp. HMT-877 (DROPPED) | Unassigned | Unassigned | |||||
| HMT-0026 | link | Schlegelella aquatica | Environmental | Environmental (Abundance: scarce) | Soil or Water | Curator assignment | ||
| HMT-0024 | link | Schlegelella thermodepolymerans | Environmental | Environmental (Abundance: scarce) | Soil or Water | Curator assignment | ||
| HMT-0553 | link | Segatella baroniae | Human host | Oral (Abundance: low) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0560 | link | Segatella buccae | Human host | Oral (Abundance: low) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0289 | link | Segatella maculosa | Human host | Oral (Abundance: medium) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0311 | link | Segatella oris | Human host | Oral (Abundance: medium) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0288 | link | Segatella oulorum | Human host | Oral (Abundance: medium) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0307 | link | Segatella salivae | Human host | Oral (Abundance: medium) | Throat | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0300 | link | Segatella sp. HMT-300 | Human host | Oral (Abundance: medium) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0305 | link | Segatella sp. HMT-305 | Human host | Oral (Abundance: medium) | Saliva | Curator assignment and 16S rRNA gene data | ||
| HMT-0309 | link | Segatella sp. HMT-309 | Human host | Oral (Abundance: medium) | Saliva | Curator assignment and 16S rRNA gene data | ||
| HMT-0443 | link | Segatella sp. HMT-443 | Human host | Oral (Abundance: low) | not determined | Curator assignment and 16S rRNA gene data | ||
| HMT-0261 | link | Segetibacter aerophilus | Environmental | Environmental (Abundance: scarce) | Soil or Water | Curator assignment | ||
| HMT-0129 | link | Selenomonadaceae [G1] bacterium HMT-129 | Human host | Oral (Abundance: low) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0132 | link | Selenomonadaceae [G1] bacterium HMT-132 | Human host | Oral (Abundance: low) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0135 | link | Selenomonadaceae [G1] bacterium HMT-135 | Human host | Oral (Abundance: low) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0145 | link | Selenomonadaceae [G1] bacterium HMT-145 | Human host | Oral (Abundance: scarce) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0148 | link | Selenomonadaceae [G1] bacterium HMT-148 | Human host | Oral (Abundance: scarce) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0150 | link | Selenomonadaceae [G1] bacterium HMT-150 | Human host | Oral (Abundance: low) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0155 | link | Selenomonadaceae [G1] bacterium HMT-155 | Human host | Oral (Abundance: low) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0483 | link | Selenomonadaceae [G1] bacterium HMT-483 | Human host | Oral (Abundance: low) | Supragingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0918 | link | Selenomonadaceae [G1] bacterium HMT-918 | Human host | Oral (Abundance: scarce) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0124 | link | Selenomonas artemidis | Human host | Oral (Abundance: medium) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0139 | link | Selenomonas dianae | Human host | Oral (Abundance: medium) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0136 | link | Selenomonas felix | Human host | Oral (Abundance: medium) | Throat | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0125 | link | Selenomonas flueggei | Human host | Oral (Abundance: medium) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0639 | link | Selenomonas infelix | Human host | Oral (Abundance: medium) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0130 | link | Selenomonas noxia | Human host | Oral (Abundance: high) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0126 | link | Selenomonas sp. HMT-126 | Human host | Oral (Abundance: medium) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0133 | link | Selenomonas sp. HMT-133 | Human host | Oral (Abundance: low) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0134 | link | Selenomonas sp. HMT-134 | Human host | Oral (Abundance: low) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0137 | Selenomonas sp. HMT-137 (DROPPED) | Unassigned | Unassigned | |||||
| HMT-0140 | Selenomonas sp. HMT-140 (DROPPED) | Unassigned | Unassigned | |||||
| HMT-0143 | Selenomonas sp. HMT-143 (DROPPED) | Unassigned | Unassigned | |||||
| HMT-0146 | link | Selenomonas sp. HMT-146 | Human host | Oral (Abundance: low) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0149 | Selenomonas sp. HMT-149 (DROPPED) | Unassigned | Unassigned | |||||
| HMT-0388 | link | Selenomonas sp. HMT-388 | Human host | Oral (Abundance: scarce) | not determined | Curator assignment and 16S rRNA gene data | ||
| HMT-0442 | link | Selenomonas sp. HMT-442 | Human host | Oral (Abundance: scarce) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0478 | Selenomonas sp. HMT-478 (DROPPED) | Unassigned | Unassigned | |||||
| HMT-0479 | link | Selenomonas sp. HMT-479 | Human host | Oral (Abundance: low) | Supragingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0481 | link | Selenomonas sp. HMT-481 | Human host | Oral (Abundance: low) | Supragingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0501 | link | Selenomonas sp. HMT-501 | Human host | Oral (Abundance: scarce) | not determined | Curator assignment and 16S rRNA gene data | ||
| HMT-0892 | link | Selenomonas sp. HMT-892 | Human host | Oral (Abundance: low) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0919 | link | Selenomonas sp. HMT-919 | Human host | Oral (Abundance: scarce) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0920 | link | Selenomonas sp. HMT-920 | Human host | Oral (Abundance: medium) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0936 | link | Selenomonas sp. HMT-936 | Human host | Oral (Abundance: scarce) | not determined | Curator assignment and 16S rRNA gene data | ||
| HMT-0937 | link | Selenomonas sp. HMT-937 | Human host | Oral (Abundance: scarce) | Supragingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0151 | link | Selenomonas sputigena | Human host | Oral (Abundance: high) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0138 | link | Selenomonas timonae | Human host | Oral (Abundance: medium) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0115 | link | Serratia marcescens | Human host | Oral (Abundance: low) | Saliva | Environmental (Abundance: scarce) | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | https://doi.org/10.1128/cmr.00017-11 |
| HMT-0095 | link | Shuttleworthia satelles | Human host | Oral (Abundance: low) | Periodontitis | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | https://doi.org/10.1099/00207713-52-5-1469 | |
| HMT-0683 | link | Simonsiella muelleri | Human host | Oral (Abundance: high) | Hard palate | Curator assignment | https://doi.org/10.1073/pnas.1409644111 | |
| HMT-0602 | link | Slackia exigua | Human host | Oral (Abundance: low) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0837 | link | Sneathia sanguinegens | Human host | Vaginal (Abundance: medium) | Vaginal | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0844 | link | Sneathia vaginalis | Human host | Vaginal (Abundance: medium) | Vaginal | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0678 | link | Solobacterium moorei | Human host | Oral (Abundance: medium) | Throat | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0003 | link | Sphingomonas glacialis | Environmental | Environmental (Abundance: scarce) | Soil or Water | Curator assignment | ||
| HMT-0004 | link | Sphingomonas sp. HMT-004 | Environmental | Environmental (Abundance: scarce) | Soil or Water | Curator assignment | ||
| HMT-0550 | link | Staphylococcus aureus | Human host | Nasal (Abundance: high) | Nasal | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0331 | link | Staphylococcus auricularis | Human host | Skin (Abundance: low) | Ear | Nasal (Abundance: low) | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | https://doi.org/10.1099/00207713-33-1-9 |
| HMT-0116 | link | Staphylococcus capitis | Human host | Skin (Abundance: medium) | Skin | Nasal (Abundance: medium) | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | |
| HMT-0567 | link | Staphylococcus caprae | Human host | Skin (Abundance: low) | Skin | Nasal (Abundance: low) | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | |
| HMT-0117 | link | Staphylococcus cohnii | Human host | Skin (Abundance: low) | Skin | Nasal (Abundance: low) | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | |
| HMT-0601 | link | Staphylococcus epidermidis | Human host | Skin (Abundance: high) | Skin | Nasal (Abundance: high) | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | |
| HMT-0120 | link | Staphylococcus haemolyticus | Human host | Nasal (Abundance: low) | Nasal | Skin (Abundance: low) | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | |
| HMT-0127 | link | Staphylococcus hominis | Human host | Skin (Abundance: medium) | Skin | Nasal (Abundance: low) | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | |
| HMT-0128 | link | Staphylococcus lugdunensis | Human host | Nasal (Abundance: low) | Nasal | Skin (Abundance: low) | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | |
| HMT-0141 | link | Staphylococcus pasteuri | Human host | Skin (Abundance: low) | Skin | Nasal (Abundance: low) | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | |
| HMT-0142 | link | Staphylococcus pettenkoferi | Human host | Skin (Abundance: scarce) | Skin | Curator assignment | ||
| HMT-0789 | link | Staphylococcus saccharolyticus | Human host | Skin (Abundance: medium) | Skin | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0233 | link | Staphylococcus schleiferi | Environmental | Environmental (Abundance: scarce) | Soil or Water | Curator assignment | ||
| HMT-0076 | link | Staphylococcus warneri | Human host | Skin (Abundance: low) | Skin | Nasal (Abundance: low) | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | |
| HMT-0663 | link | Stenotrophomonas maltophilia | Human host | Vaginal (Abundance: low) | Vaginal | Skin (Abundance: scarce) | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | |
| HMT-0037 | link | Stenotrophomonas nitritireducens | Environmental | Environmental (Abundance: scarce) | Soil or Water | Curator assignment | ||
| HMT-0419 | link | Stomatobaculum longum | Human host | Oral (Abundance: medium) | Tongue dorsum | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0373 | link | Stomatobaculum sp. HMT-373 | Human host | Oral (Abundance: scarce) | Palatine tonsils | Curator assignment and 16S rRNA gene data | ||
| HMT-0910 | link | Stomatobaculum sp. HMT-910 | Human host | Oral (Abundance: low) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0537 | link | Streptococcus agalactiae | Human host | Vaginal (Abundance: scarce) | Vaginal | Opportunistic Pathogen | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | https://doi.org/10.1128/microbiolspec.gpp3-0007-2018 |
| HMT-0543 | link | Streptococcus anginosus | Human host | Oral (Abundance: medium) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0073 | link | Streptococcus australis | Human host | Oral (Abundance: medium) | Tongue dorsum | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0576 | link | Streptococcus constellatus | Human host | Oral (Abundance: medium) | Palatine tonsils | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0578 | link | Streptococcus cristatus | Human host | Oral (Abundance: medium) | Supragingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0886 | Streptococcus cristatus (DROPPED) | Unassigned | Unassigned | |||||
| HMT-0594 | link | Streptococcus downei | Human host | Oral (Abundance: scarce) | Buccal mucosa | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0622 | link | Streptococcus gordonii | Human host | Oral (Abundance: medium) | Supragingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0456 | link | Streptococcus ilei | Human host | Oral (Abundance: medium) | Tongue dorsum | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0061 | link | Streptococcus infantis clade-061 | Human host | Oral (Abundance: high) | Hard palate | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0431 | link | Streptococcus infantis clade-431 | Human host | Oral (Abundance: high) | Hard palate | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0444 | link | Streptococcus infantis clade-444 | Human host | Oral (Abundance: high) | Hard palate | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0638 | link | Streptococcus infantis clade-638 | Human host | Oral (Abundance: high) | Hard palate | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0644 | link | Streptococcus intermedius | Human host | Oral (Abundance: medium) | Subgingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0948 | link | Streptococcus lactarius | Human host | Oral (Abundance: low) | Tongue dorsum | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) and 16S rRNA gene data, Dewhirst et al. unpublished | ||
| HMT-0677 | link | Streptococcus mitis | Human host | Oral (Abundance: high) | Keratinized gingiva | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0686 | link | Streptococcus mutans | Human host | Oral (Abundance: medium) | Subgingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0071 | link | Streptococcus oralis subsp. tigurinus | Human host | Oral (Abundance: medium) | Supragingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0398 | link | Streptococcus oralis subsp. dentisani | Human host | Oral (Abundance: high) | Keratinized gingiva | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0707 | link | Streptococcus oralis subsp. oralis | Human host | Oral (Abundance: high) | Buccal mucosa | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0411 | link | Streptococcus parasanguinis | Human host | Oral (Abundance: high) | Tongue dorsum | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0721 | Streptococcus parasanguinis (DROPPED) | Unassigned | Unassigned | |||||
| HMT-0728 | link | Streptococcus peroris | Human host | Oral (Abundance: medium) | Hard palate | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0734 | link | Streptococcus pneumoniae | Human host | Nasal (Abundance: medium) | Nasal | Oral (Abundance: low) | Curator assignment | |
| HMT-0425 | link | Streptococcus pseudopneumoniae | Human host | Oral (Abundance: high) | Buccal mucosa | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0745 | link | Streptococcus pyogenes | Pathogen | Pathogen (Abundance: scarce) | Frank pathogen | Curator assignment | ||
| HMT-0415 | link | Streptococcus rubneri | Human host | Oral (Abundance: medium) | Tongue dorsum | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0755 | link | Streptococcus salivarius | Human host | Oral (Abundance: high) | Tongue dorsum | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0758 | link | Streptococcus sanguinis | Human host | Oral (Abundance: high) | Supragingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0767 | link | Streptococcus sinensis | Human host | Oral (Abundance: low) | Supragingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) and 16S rRNA gene data, Dewhirst et al. unpublished | ||
| HMT-0768 | link | Streptococcus sobrinus | Human host | Oral (Abundance: scarce) | Buccal mucosa | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0055 | Streptococcus sp. HMT-055 (DROPPED) | Unassigned | Unassigned | |||||
| HMT-0056 | link | Streptococcus sp. HMT-056 | Human host | Oral (Abundance: medium) | Subgingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0057 | link | Streptococcus sp. HMT-057 | Human host | Oral (Abundance: medium) | not determined | Curator assignment and 16S rRNA gene data | ||
| HMT-0058 | link | Streptococcus sp. HMT-058 | Human host | Oral (Abundance: low) | Supragingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0064 | link | Streptococcus sp. HMT-064 | Human host | Oral (Abundance: low) | not determined | Curator assignment and 16S rRNA gene data | ||
| HMT-0065 | Streptococcus sp. HMT-065 (DROPPED) | Unassigned | Unassigned | |||||
| HMT-0066 | link | Streptococcus sp. HMT-066 | Human host | Oral (Abundance: medium) | Tongue dorsum | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0067 | Streptococcus sp. HMT-067 (DROPPED) | Unassigned | Unassigned | |||||
| HMT-0068 | Streptococcus sp. HMT-068 (DROPPED) | Unassigned | Unassigned | |||||
| HMT-0069 | Streptococcus sp. HMT-069 (DROPPED) | Unassigned | Unassigned | |||||
| HMT-0070 | link | Streptococcus sp. HMT-070 | Human host | Oral (Abundance: scarce) | not determined | Curator assignment and 16S rRNA gene data | ||
| HMT-0074 | link | Streptococcus sp. HMT-074 | Human host | Oral (Abundance: medium) | not determined | Curator assignment and 16S rRNA gene data | ||
| HMT-0423 | link | Streptococcus sp. HMT-423 | Human host | Oral (Abundance: no data) | not determined | Curator assignment and 16S rRNA gene data | ||
| HMT-0486 | Streptococcus sp. HMT-486 (DROPPED) | Unassigned | Unassigned | |||||
| HMT-0487 | Streptococcus sp. HMT-487 (DROPPED) | Unassigned | Unassigned | |||||
| HMT-0152 | link | Streptococcus thermophilus | Environmental | Environmental (Abundance: low) | Food | Nasal (Abundance: low) | Curator assignment | |
| HMT-0021 | link | Streptococcus vestibularis | Human host | Oral (Abundance: medium) | Buccal mucosa | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0477 | link | Stutzerimonas stutzeri | Environmental | Environmental (Abundance: scarce) | Soil or Water | Curator assignment | ||
| HMT-0435 | Syntrophomonadaceae [G1] bacterium HMT-435 | Human host | Unassigned (Abundance: scarce) | Unassigned | Curator assignment | |||
| HMT-0613 | link | Tannerella forsythia | Human host | Oral (Abundance: high) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0286 | link | Tannerella serpentiformis | Human host | Oral (Abundance: medium) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0808 | link | Tannerella sp. HMT-808 | Human host | Oral (Abundance: medium) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0916 | link | Tannerella sp. HMT-916 | Human host | Oral (Abundance: scarce) | Supragingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0826 | Terrahaemophilus aromaticivorans (DROPPED) | Unassigned | Unassigned | |||||
| HMT-0541 | link | Treponema amylovorum | Human host | Oral (Abundance: low) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0584 | link | Treponema denticola | Human host | Oral (Abundance: high) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0653 | link | Treponema lecithinolyticum | Human host | Oral (Abundance: medium) | Subgingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0664 | link | Treponema maltophilum | Human host | Oral (Abundance: medium) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0667 | link | Treponema medium | Human host | Oral (Abundance: medium) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0805 | link | Treponema pallidum | Pathogen | Pathogen (Abundance: scarce) | Frank pathogen | Curator assignment | ||
| HMT-0724 | link | Treponema parvum | Human host | Oral (Abundance: low) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0725 | link | Treponema pectinovorum | Human host | Oral (Abundance: scarce) | Periodontitis | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | https://doi.org/10.1099/00207713-33-4-852 | |
| HMT-0743 | link | Treponema putidum | Human host | Oral (Abundance: medium) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0438 | link | Treponema socranskii subsp. buccale | Human host | Oral (Abundance: medium) | Subgingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0440 | link | Treponema socranskii subsp. paredis | Human host | Oral (Abundance: medium) | Subgingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0769 | link | Treponema socranskii subsp. socranskii | Human host | Oral (Abundance: medium) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0226 | link | Treponema sp. HMT-226 | Human host | Oral (Abundance: medium) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0227 | link | Treponema sp. HMT-227 | Human host | Oral (Abundance: scarce) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0228 | link | Treponema sp. HMT-228 | Human host | Oral (Abundance: scarce) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0230 | link | Treponema sp. HMT-230 | Human host | Oral (Abundance: medium) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0231 | link | Treponema sp. HMT-231 | Human host | Oral (Abundance: medium) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0232 | Treponema sp. HMT-232 | Human host | Oral (Abundance: scarce) | Subgingival plaque | Curator assignment and 16S rRNA gene data | |||
| HMT-0234 | link | Treponema sp. HMT-234 | Human host | Oral (Abundance: low) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0235 | link | Treponema sp. HMT-235 | Human host | Oral (Abundance: scarce) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0236 | link | Treponema sp. HMT-236 | Human host | Oral (Abundance: low) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0237 | link | Treponema sp. HMT-237 | Human host | Oral (Abundance: medium) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0238 | link | Treponema sp. HMT-238 | Human host | Oral (Abundance: low) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0239 | link | Treponema sp. HMT-239 | Human host | Oral (Abundance: low) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0242 | link | Treponema sp. HMT-242 | Human host | Oral (Abundance: scarce) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0246 | link | Treponema sp. HMT-246 | Human host | Oral (Abundance: low) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0247 | link | Treponema sp. HMT-247 | Human host | Oral (Abundance: medium) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0249 | Treponema sp. HMT-249 | Human host | Oral (Abundance: scarce) | Subgingival plaque | Curator assignment and 16S rRNA gene data | |||
| HMT-0250 | Treponema sp. HMT-250 | Human host | Oral (Abundance: scarce) | Subgingival plaque | Curator assignment and 16S rRNA gene data | |||
| HMT-0251 | link | Treponema sp. HMT-251 | Human host | Oral (Abundance: scarce) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0252 | link | Treponema sp. HMT-252 | Human host | Oral (Abundance: scarce) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0253 | link | Treponema sp. HMT-253 | Human host | Oral (Abundance: low) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0254 | link | Treponema sp. HMT-254 | Human host | Oral (Abundance: low) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0255 | Treponema sp. HMT-255 (DROPPED) | Unassigned | Unassigned | |||||
| HMT-0256 | link | Treponema sp. HMT-256 | Human host | Oral (Abundance: scarce) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0257 | link | Treponema sp. HMT-257 | Human host | Oral (Abundance: medium) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0258 | link | Treponema sp. HMT-258 | Human host | Oral (Abundance: low) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0260 | link | Treponema sp. HMT-260 | Human host | Oral (Abundance: low) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0262 | link | Treponema sp. HMT-262 | Human host | Oral (Abundance: low) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0263 | link | Treponema sp. HMT-263 | Human host | Oral (Abundance: scarce) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0264 | link | Treponema sp. HMT-264 | Human host | Oral (Abundance: scarce) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0265 | link | Treponema sp. HMT-265 | Human host | Oral (Abundance: scarce) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0268 | link | Treponema sp. HMT-268 | Human host | Oral (Abundance: low) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0269 | link | Treponema sp. HMT-269 | Human host | Oral (Abundance: scarce) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0270 | link | Treponema sp. HMT-270 | Human host | Oral (Abundance: low) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0271 | link | Treponema sp. HMT-271 | Human host | Oral (Abundance: scarce) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0490 | link | Treponema sp. HMT-490 | Human host | Oral (Abundance: low) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0508 | link | Treponema sp. HMT-508 | Human host | Oral (Abundance: low) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0517 | link | Treponema sp. HMT-517 | Human host | Oral (Abundance: low) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0518 | link | Treponema sp. HMT-518 | Human host | Oral (Abundance: scarce) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0927 | link | Treponema sp. HMT-927 | Human host | Oral (Abundance: scarce) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0951 | link | Treponema sp. HMT-951 | Human host | Oral (Abundance: low) | Subgingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0029 | link | Treponema vincentii clade-029 | Human host | Oral (Abundance: medium) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0432 | link | Treponema vincentii clade-432 | Human host | Oral (Abundance: medium) | Periodontitis | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0799 | link | Ureaplasma parvum | Human host | Vaginal (Abundance: medium) | Vaginal | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0375 | link | Urinicoccus timonensis | Human host | Nasal (Abundance: low) | Nasal | Skin (Abundance: low) | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | |
| HMT-0717 | link | Variovorax paradoxus | Environmental | Environmental (Abundance: scarce) | Soil or Water | Curator assignment | ||
| HMT-0524 | link | Veillonella atypica | Human host | Oral (Abundance: high) | Throat | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0887 | link | Veillonella denticariosi | Human host | Oral (Abundance: low) | Subgingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0160 | link | Veillonella dispar | Human host | Oral (Abundance: high) | Throat | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0156 | link | Veillonella nakazawae | Human host | Oral (Abundance: high) | Throat | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0161 | link | Veillonella parvula | Human host | Oral (Abundance: high) | Subgingival plaque | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0158 | link | Veillonella rogosae | Human host | Oral (Abundance: high) | Tongue dorsum | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0157 | Veillonella sp. HMT-157 | Human host | Oral (Abundance: no data) | not determined | Curator assignment and 16S rRNA gene data | |||
| HMT-0779 | link | Veillonella sp. HMT-779 | Human host | Oral (Abundance: high) | Keratinized gingiva | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0780 | link | Veillonella sp. HMT-780 | Human host | Oral (Abundance: high) | Keratinized gingiva | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0917 | link | Veillonella sp. HMT-917 | Human host | Oral (Abundance: low) | Throat | Curator assignment and 16S rRNA gene data | ||
| HMT-0421 | link | Veillonella tobetsuensis | Human host | Oral (Abundance: medium) | Tongue dorsum | Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | ||
| HMT-0998 | link | Victivallis lenta | Human host | Gut (Abundance: low) | Stool | Curator assignment and Metagenomic mapping data, HMP (Torres-Morales et al. 2026) | https://doi.org/10.1038/s41467-020-19929-w | |
| HMT-0900 | link | Weeksellaceae [G1] bacterium HMT-900 | Human host | Oral (Abundance: medium) | Supragingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0907 | link | Weeksellaceae [G1] bacterium HMT-907 | Human host | Oral (Abundance: scarce) | Supragingival plaque | Curator assignment and 16S rRNA gene data | ||
| HMT-0931 | link | Weeksellaceae [G1] bacterium HMT-931 | Human host | Oral (Abundance: medium) | Keratinized gingiva | Curator assignment and 16S rRNA gene data | ||
| HMT-0827 | link | Yersinia pestis | Pathogen | Pathogen (Abundance: scarce) | Frank pathogen | Curator assignment |
