Genome Meta Information: Ligilactobacillus salivarius UCC118 (GCA_000008925.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000008925.1 | ||
| HOMD Taxon-ID | HMT-0756 | ||
| Species Name (in use by HOMD) | Ligilactobacillus salivarius | ||
| Organism Name (as deposited) | HMT-756 Ligilactobacillus salivarius UCC118 | ||
| Strain or Isolate | UCC118 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Ligilactobacillus; s__Ligilactobacillus salivarius |
||
| Sequencing Technology | |||
| Genome Coverage | |||
| Contigs |
|
||
| Total Sequence Length | 2,133,977 (bp) | ||
| GC Percentage | 33.04 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/008/925/GCA_000008925.1_ASM892v1 | ||
| CDS | 2101 | ||
| Genes | 2242 | ||
| mRNA | 2242 | ||
| misc RNA | 42 | ||
| rRNA | 21 | ||
| tRNA | 77 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.95 % | ||
| CheckM Completeness | 97.52 % | ||
| CheckM Contamination | 0.85 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM892v1 |
| GenBank Assembly Accession | GCA_000008925.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000008925.1 [NCBI] |
| BioSample | SAMN02604111 [NCBI] |
| BioProject | PRJNA13280 [NCBI] |
| Submitter | University College Cork |
| Submission Date | 2014-01-30T14:54:22.493 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 362948 |
| Isolation Source | |
| Geo Location | |
