Genome Meta Information: Phocaeicola vulgatus ATCC 8482 (GCA_000012825.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000012825.1 | ||
| HOMD Taxon-ID | HMT-0978 | ||
| Species Name (in use by HOMD) | Phocaeicola vulgatus | ||
| Organism Name (as deposited) | HMT-978 Phocaeicola vulgatus ATCC 8482 | ||
| Strain or Isolate | ATCC 8482 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola; s__Phocaeicola vulgatus |
||
| Sequencing Technology | |||
| Genome Coverage | |||
| Contigs |
|
||
| Total Sequence Length | 5,163,189 (bp) | ||
| GC Percentage | 42.2 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/012/825/GCA_000012825.1_ASM1282v1 | ||
| CDS | 4195 | ||
| Genes | 4319 | ||
| mRNA | 4319 | ||
| misc RNA | 21 | ||
| rRNA | 21 | ||
| tRNA | 81 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 99.94 % | ||
| CheckM Contamination | 1.06 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1282v1 |
| GenBank Assembly Accession | GCA_000012825.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000012825.1 [NCBI] |
| BioSample | SAMN02604309 [NCBI] |
| BioProject | PRJNA13378 [NCBI] |
| Submitter | Washington University (WashU) |
| Submission Date | 2014-01-30T15:13:24.060 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 435590 |
| Isolation Source | |
| Geo Location | |
