Genome Meta Information: Rhodobacter capsulatus SB 1003 (GCA_000021865.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000021865.1 | ||
| HOMD Taxon-ID | HMT-0857 | ||
| Species Name (in use by HOMD) | Rhodobacter capsulatus | ||
| Organism Name (as deposited) | HMT-857 Rhodobacter capsulatus SB 1003 | ||
| Strain or Isolate | SB 1003 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Rhodobacter; s__Rhodobacter capsulatus_B |
||
| Sequencing Technology | |||
| Genome Coverage | |||
| Contigs |
|
||
| Total Sequence Length | 3,871,920 (bp) | ||
| GC Percentage | 66.56 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/021/865/GCA_000021865.1_ASM2186v1 | ||
| CDS | 3618 | ||
| Genes | 3720 | ||
| mRNA | 3720 | ||
| misc RNA | 29 | ||
| rRNA | 12 | ||
| tRNA | 60 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 93.09 % | ||
| CheckM Completeness | 99.15 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 3 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2186v1 |
| GenBank Assembly Accession | GCA_000021865.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000021865.1 [NCBI] |
| BioSample | SAMN02604080 [NCBI] |
| BioProject | PRJNA55 [NCBI] |
| Submitter | Univ. Chicago |
| Submission Date | 2014-01-30T14:54:20.680 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 272942 |
| Isolation Source | |
| Geo Location | |
