Genome Meta Information: Desulfovibrio fairfieldensis 3_1_syn3 (GCA_000145315.2)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000145315.2 | ||
| HOMD Taxon-ID | HMT-0605 | ||
| Species Name (in use by HOMD) | Desulfovibrio fairfieldensis | ||
| Organism Name (as deposited) | HMT-605 Desulfovibrio fairfieldensis 3_1_syn3 | ||
| Strain or Isolate | 3_1_syn3 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Desulfovibrio; s__Desulfovibrio fairfieldensis_A |
||
| Sequencing Technology | 454 | ||
| Genome Coverage | 21 | ||
| Contigs |
|
||
| Total Sequence Length | 3,663,932 (bp) | ||
| GC Percentage | 60.77 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/145/315/GCA_000145315.2_Desulfovibrio_sp3_1_syn3_V2 | ||
| CDS | 3092 | ||
| Genes | 3176 | ||
| mRNA | 3176 | ||
| misc RNA | 20 | ||
| rRNA | 9 | ||
| tRNA | 54 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 98.51 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | Desulfovibrio_sp3_1_syn3_V2 |
| GenBank Assembly Accession | GCA_000145315.2 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000145315.2 [NCBI] |
| BioSample | SAMN02463836 [NCBI] |
| BioProject | PRJNA42529 [NCBI] |
| Submitter | Broad Institute |
| Submission Date | 2013-12-18T11:11:44.913 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | ADDR02 |
| NCBI TaxID | 457398 |
| Isolation Source | missing |
| Geo Location | not determined |
