Genome Meta Information: Mycobacterium tuberculosis Haarlem (GCA_000153685.2)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000153685.2 | ||
| HOMD Taxon-ID | HMT-0822 | ||
| Species Name (in use by HOMD) | Mycobacterium tuberculosis | ||
| Organism Name (as deposited) | HMT-822 Mycobacterium tuberculosis Haarlem | ||
| Strain or Isolate | Haarlem | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium; s__Mycobacterium tuberculosis |
||
| Sequencing Technology | |||
| Genome Coverage | |||
| Contigs |
|
||
| Total Sequence Length | 4,408,224 (bp) | ||
| GC Percentage | 65.63 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/153/685/GCA_000153685.2_ASM15368v2 | ||
| CDS | 4048 | ||
| Genes | 4105 | ||
| mRNA | 0 | ||
| misc RNA | 0 | ||
| rRNA | 3 | ||
| tRNA | 53 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.93 % | ||
| CheckM Completeness | 97.3 % | ||
| CheckM Contamination | 0.37 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM15368v2 |
| GenBank Assembly Accession | GCA_000153685.2 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000153685.2 [NCBI] |
| BioSample | SAMN03081423 [NCBI] |
| BioProject | PRJNA17353 [NCBI] |
| Submitter | Broad Institute |
| Submission Date | 2014-09-26T10:50:18.403 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 395095 |
| Isolation Source | |
| Geo Location | |
