Genome Meta Information: Oribacterium sp. HMT-078 F0262 (GCA_000160135.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000160135.1 | ||
| HOMD Taxon-ID | HMT-0078 | ||
| Species Name (in use by HOMD) | Oribacterium sp. HMT-078 | ||
| Organism Name (as deposited) | HMT-078 Oribacterium sp. HMT-078 F0262 | ||
| Strain or Isolate | F0262 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Oribacterium; s__Oribacterium sp000160135 |
||
| Sequencing Technology | |||
| Genome Coverage | |||
| Contigs |
|
||
| Total Sequence Length | 2,676,554 (bp) | ||
| GC Percentage | 54.74 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/160/135/GCA_000160135.1_ASM16013v1 | ||
| CDS | 2331 | ||
| Genes | 2455 | ||
| mRNA | 2455 | ||
| misc RNA | 68 | ||
| rRNA | 6 | ||
| tRNA | 49 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 98.75 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM16013v1 |
| GenBank Assembly Accession | GCA_000160135.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000160135.1 [NCBI] |
| BioSample | SAMN00008845 [NCBI] |
| BioProject | PRJNA33167 [NCBI] |
| Submitter | Washington University Genome Sequencing Center |
| Submission Date | 2010-02-19T21:00:08.590 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | ACIQ02 |
| NCBI TaxID | 608534 |
| Isolation Source | missing |
| Geo Location | not determined |
