Genome Meta Information: Staphylococcus caprae M23864:W1 (GCA_000160215.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000160215.1 | ||
| HOMD Taxon-ID | HMT-0567 | ||
| Species Name (in use by HOMD) | Staphylococcus caprae | ||
| Organism Name (as deposited) | HMT-567 Staphylococcus caprae M23864 | ||
| Strain or Isolate | M23864:W1 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus; s__Staphylococcus caprae |
||
| Sequencing Technology | |||
| Genome Coverage | |||
| Contigs |
|
||
| Total Sequence Length | 2,629,570 (bp) | ||
| GC Percentage | 33.96 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/160/215/GCA_000160215.1_ASM16021v1 | ||
| CDS | 2502 | ||
| Genes | 2609 | ||
| mRNA | 2609 | ||
| misc RNA | 53 | ||
| rRNA | 4 | ||
| tRNA | 49 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.66 % | ||
| CheckM Completeness | 99 % | ||
| CheckM Contamination | 0.33 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM16021v1 |
| GenBank Assembly Accession | GCA_000160215.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000160215.1 [NCBI] |
| BioSample | SAMN00002222 [NCBI] |
| BioProject | PRJNA34647 [NCBI] |
| Submitter | Baylor College of Medicine |
| Submission Date | 2009-04-11T03:40:02.247 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | ACJB01 |
| NCBI TaxID | 525378 |
| Isolation Source | missing |
| Geo Location | not determined |
