Genome Meta Information: Lactobacillus iners DSM 13335 (GCA_000160875.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000160875.1 | ||
| HOMD Taxon-ID | HMT-0838 | ||
| Species Name (in use by HOMD) | Lactobacillus iners | ||
| Organism Name (as deposited) | HMT-838 Lactobacillus iners DSM 13335 | ||
| Strain or Isolate | DSM 13335 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus; s__Lactobacillus iners |
||
| Sequencing Technology | |||
| Genome Coverage | |||
| Contigs |
|
||
| Total Sequence Length | 1,277,649 (bp) | ||
| GC Percentage | 32.95 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/160/875/GCA_000160875.1_ASM16087v1 | ||
| CDS | 1191 | ||
| Genes | 1264 | ||
| mRNA | 1264 | ||
| misc RNA | 23 | ||
| rRNA | 3 | ||
| tRNA | 46 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.98 % | ||
| CheckM Completeness | 99.61 % | ||
| CheckM Contamination | 0.4 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM16087v1 |
| GenBank Assembly Accession | GCA_000160875.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000160875.1 [NCBI] |
| BioSample | SAMN00139432 [NCBI] |
| BioProject | PRJNA31491 [NCBI] |
| Submitter | BCM |
| Submission Date | 2010-12-03T14:10:01.883 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | ACLN01 |
| NCBI TaxID | 525328 |
| Isolation Source | missing |
| Geo Location | not determined |
