Genome Meta Information: Leptotrichia hofstadii F0254 (GCA_000162955.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000162955.1 | ||
| HOMD Taxon-ID | HMT-0224 | ||
| Species Name (in use by HOMD) | Leptotrichia hofstadii | ||
| Organism Name (as deposited) | HMT-224 Leptotrichia hofstadii F0254 | ||
| Strain or Isolate | F0254 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia; s__Leptotrichia hofstadii |
||
| Sequencing Technology | |||
| Genome Coverage | |||
| Contigs |
|
||
| Total Sequence Length | 2,456,453 (bp) | ||
| GC Percentage | 30.88 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/162/955/GCA_000162955.1_ASM16295v1 | ||
| CDS | 2702 | ||
| Genes | 2786 | ||
| mRNA | 2786 | ||
| misc RNA | 20 | ||
| rRNA | 17 | ||
| tRNA | 46 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.72 % | ||
| CheckM Completeness | 86.71 % | ||
| CheckM Contamination | 1.83 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM16295v1 |
| GenBank Assembly Accession | GCA_000162955.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000162955.1 [NCBI] |
| BioSample | SAMN00008833 [NCBI] |
| BioProject | PRJNA33151 [NCBI] |
| Submitter | WUGSC |
| Submission Date | 2010-02-19T20:22:04.550 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | ACVB02 |
| NCBI TaxID | 634994 |
| Isolation Source | missing |
| Geo Location | not determined |
