Genome Meta Information: Schaalia dentiphila F0309 (GCA_000163415.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000163415.1 | ||
| HOMD Taxon-ID | HMT-0710 | ||
| Species Name (in use by HOMD) | Schaalia dentiphila | ||
| Organism Name (as deposited) | HMT-710 Schaalia dentiphila F0309 | ||
| Strain or Isolate | F0309 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia; s__Pauljensenia dentiphila |
||
| Sequencing Technology | |||
| Genome Coverage | |||
| Contigs |
|
||
| Total Sequence Length | 2,431,995 (bp) | ||
| GC Percentage | 65.38 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/163/415/GCA_000163415.1_ASM16341v1 | ||
| CDS | 2070 | ||
| Genes | 2136 | ||
| mRNA | 2136 | ||
| misc RNA | 10 | ||
| rRNA | 7 | ||
| tRNA | 48 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 88 % | ||
| CheckM Completeness | 97.25 % | ||
| CheckM Contamination | 1.03 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM16341v1 |
| GenBank Assembly Accession | GCA_000163415.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000163415.1 [NCBI] |
| BioSample | SAMN00008754 [NCBI] |
| BioProject | PRJNA38309 [NCBI] |
| Submitter | WUGSC |
| Submission Date | 2010-02-19T16:08:06.306 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | ACYT02 |
| NCBI TaxID | 649742 |
| Isolation Source | missing |
| Geo Location | not determined |
