Genome Meta Information: Porphyromonas endodontalis ATCC 35406 (GCA_000174815.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000174815.1 | ||
| HOMD Taxon-ID | HMT-0273 | ||
| Species Name (in use by HOMD) | Porphyromonas endodontalis | ||
| Organism Name (as deposited) | HMT-273 Porphyromonas endodontalis ATCC 35406 | ||
| Strain or Isolate | ATCC 35406 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas; s__Porphyromonas endodontalis |
||
| Sequencing Technology | |||
| Genome Coverage | |||
| Contigs |
|
||
| Total Sequence Length | 2,064,508 (bp) | ||
| GC Percentage | 47.52 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/174/815/GCA_000174815.1_ASM17481v1 | ||
| CDS | 1754 | ||
| Genes | 1814 | ||
| mRNA | 1814 | ||
| misc RNA | 10 | ||
| rRNA | 3 | ||
| tRNA | 46 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 98.64 % | ||
| CheckM Contamination | 0.1 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM17481v1 |
| GenBank Assembly Accession | GCA_000174815.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000174815.1 [NCBI] |
| BioSample | SAMN00002247 [NCBI] |
| BioProject | PRJNA31385 [NCBI] |
| Submitter | J. Craig Venter Institute |
| Submission Date | 2009-04-23T11:56:04.123 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | ACNN01 |
| NCBI TaxID | 553175 |
| Isolation Source | missing |
| Geo Location | not determined |
