Genome Meta Information: Limosilactobacillus oris PB013-T2-3 (GCA_000180015.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000180015.1 | ||
| HOMD Taxon-ID | HMT-0709 | ||
| Species Name (in use by HOMD) | Limosilactobacillus oris | ||
| Organism Name (as deposited) | HMT-709 Limosilactobacillus oris PB013-T2-3 | ||
| Strain or Isolate | PB013-T2-3 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus; s__Limosilactobacillus oris |
||
| Sequencing Technology | 454 | ||
| Genome Coverage | 60 | ||
| Contigs |
|
||
| Total Sequence Length | 2,115,990 (bp) | ||
| GC Percentage | 49.77 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/180/015/GCA_000180015.1_ASM18001v1 | ||
| CDS | 2014 | ||
| Genes | 2107 | ||
| mRNA | 2107 | ||
| misc RNA | 30 | ||
| rRNA | 3 | ||
| tRNA | 59 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.31 % | ||
| CheckM Completeness | 99.35 % | ||
| CheckM Contamination | 0.74 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM18001v1 |
| GenBank Assembly Accession | GCA_000180015.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000180015.1 [NCBI] |
| BioSample | SAMN00116776 [NCBI] |
| BioProject | PRJNA54025 [NCBI] |
| Submitter | J. Craig Venter Institute |
| Submission Date | 2010-10-27T15:41:03.673 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | AEKL01 |
| NCBI TaxID | 908339 |
| Isolation Source | missing |
| Geo Location | not determined |
