Genome Meta Information: Schaalia sp. HMT-180 F0310 (GCA_000185285.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000185285.1 | ||
| HOMD Taxon-ID | HMT-0180 | ||
| Species Name (in use by HOMD) | Schaalia sp. HMT-180 | ||
| Organism Name (as deposited) | HMT-180 Schaalia sp. HMT-180 F0310 | ||
| Strain or Isolate | F0310 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia; s__Pauljensenia sp000185285 |
||
| Sequencing Technology | 454 | ||
| Genome Coverage | 41.4 | ||
| Contigs |
|
||
| Total Sequence Length | 2,372,658 (bp) | ||
| GC Percentage | 66.7 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/185/285/GCA_000185285.1_ASM18528v1 | ||
| CDS | 2016 | ||
| Genes | 2080 | ||
| mRNA | 2080 | ||
| misc RNA | 10 | ||
| rRNA | 3 | ||
| tRNA | 50 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 100 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM18528v1 |
| GenBank Assembly Accession | GCA_000185285.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000185285.1 [NCBI] |
| BioSample | SAMN00260256 [NCBI] |
| BioProject | PRJNA53011 [NCBI] |
| Submitter | Baylor College of Medicine |
| Submission Date | 2011-04-26T10:29:05.767 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | AEPP01 |
| NCBI TaxID | 888052 |
| Isolation Source | oral cavity |
| Geo Location | not determined |
