Genome Meta Information: Neisseria subflava C102 (GCA_000186165.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000186165.1 | ||
| HOMD Taxon-ID | HMT-0476 | ||
| Species Name (in use by HOMD) | Neisseria subflava | ||
| Organism Name (as deposited) | HMT-476 Neisseria subflava C102 | ||
| Strain or Isolate | C102 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria; s__Neisseria sp000186165 |
||
| Sequencing Technology | 454 | ||
| Genome Coverage | 36 | ||
| Contigs |
|
||
| Total Sequence Length | 2,169,437 (bp) | ||
| GC Percentage | 49.82 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/186/165/GCA_000186165.1_Neis_muco_C102_V1 | ||
| CDS | 2016 | ||
| Genes | 2092 | ||
| mRNA | 2092 | ||
| misc RNA | 17 | ||
| rRNA | 3 | ||
| tRNA | 55 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 87.35 % | ||
| CheckM Completeness | 98.64 % | ||
| CheckM Contamination | 0.4 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | Neis_muco_C102_V1 |
| GenBank Assembly Accession | GCA_000186165.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000186165.1 [NCBI] |
| BioSample | SAMN02463751 [NCBI] |
| BioProject | PRJNA38747 [NCBI] |
| Submitter | Broad Institute |
| Submission Date | 2013-12-18T11:11:35.170 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | ACRG01 |
| NCBI TaxID | 435832 |
| Isolation Source | missing |
| Geo Location | not determined |
