Genome Meta Information: Phocaeicola plebeius DSM 17135 (GCA_000187895.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000187895.1 | ||
| HOMD Taxon-ID | HMT-0977 | ||
| Species Name (in use by HOMD) | Phocaeicola plebeius | ||
| Organism Name (as deposited) | HMT-977 Phocaeicola plebeius DSM 17135 | ||
| Strain or Isolate | DSM 17135 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola; s__Phocaeicola plebeius |
||
| Sequencing Technology | |||
| Genome Coverage | |||
| Contigs |
|
||
| Total Sequence Length | 4,421,924 (bp) | ||
| GC Percentage | 44.32 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/187/895/GCA_000187895.1_ASM18789v1 | ||
| CDS | 3643 | ||
| Genes | 3757 | ||
| mRNA | 3757 | ||
| misc RNA | 22 | ||
| rRNA | 14 | ||
| tRNA | 77 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 100 % | ||
| CheckM Contamination | 0.71 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM18789v1 |
| GenBank Assembly Accession | GCA_000187895.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000187895.1 [NCBI] |
| BioSample | SAMN00000028 [NCBI] |
| BioProject | PRJNA27829 [NCBI] |
| Submitter | Washington University Genome Sequencing Center |
| Submission Date | 2008-04-04T08:44:35.013 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | ABQC02 |
| NCBI TaxID | 484018 |
| Isolation Source | missing |
| Geo Location | not determined |
