Genome Meta Information: Lacticaseibacillus paracasei BD-II (GCA_000194765.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000194765.1 | ||
| HOMD Taxon-ID | HMT-0716 | ||
| Species Name (in use by HOMD) | Lacticaseibacillus paracasei | ||
| Organism Name (as deposited) | HMT-716 Lacticaseibacillus paracasei BD-II | ||
| Strain or Isolate | BD-II | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus; s__Lacticaseibacillus paracasei |
||
| Sequencing Technology | |||
| Genome Coverage | |||
| Contigs |
|
||
| Total Sequence Length | 3,127,288 (bp) | ||
| GC Percentage | 46.29 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/194/765/GCA_000194765.1_ASM19476v1 | ||
| CDS | 3066 | ||
| Genes | 3175 | ||
| mRNA | 3175 | ||
| misc RNA | 33 | ||
| rRNA | 15 | ||
| tRNA | 60 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.65 % | ||
| CheckM Completeness | 93.09 % | ||
| CheckM Contamination | 5.27 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM19476v1 |
| GenBank Assembly Accession | GCA_000194765.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000194765.1 [NCBI] |
| BioSample | SAMN02603876 [NCBI] |
| BioProject | PRJNA64431 [NCBI] |
| Submitter | State Key Laboratory of Dairy Biotechnology, Technology Center of Bright Dairy & Food Co., Ltd,China |
| Submission Date | 2014-01-30T14:54:04.170 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1597 |
| Isolation Source | homemade koumiss |
| Geo Location | China |
