Genome Meta Information: Selenomonas sputigena ATCC 35185 (GCA_000208405.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000208405.1 | ||
| HOMD Taxon-ID | HMT-0151 | ||
| Species Name (in use by HOMD) | Selenomonas sputigena | ||
| Organism Name (as deposited) | HMT-151 Selenomonas sputigena ATCC 35185 | ||
| Strain or Isolate | ATCC 35185 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Selenomonas; s__Selenomonas sputigena |
||
| Sequencing Technology | 454/Illumina | ||
| Genome Coverage | 30 | ||
| Contigs |
|
||
| Total Sequence Length | 2,568,361 (bp) | ||
| GC Percentage | 57.11 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/208/405/GCA_000208405.1_ASM20840v1 | ||
| CDS | 2280 | ||
| Genes | 2375 | ||
| mRNA | 2375 | ||
| misc RNA | 29 | ||
| rRNA | 12 | ||
| tRNA | 53 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 98.75 % | ||
| CheckM Contamination | 0.18 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM20840v1 |
| GenBank Assembly Accession | GCA_000208405.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000208405.1 [NCBI] |
| BioSample | SAMN00713607 [NCBI] |
| BioProject | PRJNA51247 [NCBI] |
| Submitter | US DOE Joint Genome Institute (JGI-PGF) |
| Submission Date | 2011-08-24T11:41:13.280 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 546271 |
| Isolation Source | subgingival sulcus |
| Geo Location | Missing |
