Genome Meta Information: Porphyromonas asaccharolytica DSM 20707 (GCA_000212375.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000212375.1 | ||
| HOMD Taxon-ID | HMT-0547 | ||
| Species Name (in use by HOMD) | Porphyromonas asaccharolytica | ||
| Organism Name (as deposited) | HMT-547 Porphyromonas asaccharolytica DSM 20707 | ||
| Strain or Isolate | DSM 20707 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas; s__Porphyromonas asaccharolytica |
||
| Sequencing Technology | 454/Illumina | ||
| Genome Coverage | 30 | ||
| Contigs |
|
||
| Total Sequence Length | 2,186,370 (bp) | ||
| GC Percentage | 52.47 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/212/375/GCA_000212375.1_ASM21237v1 | ||
| CDS | 1727 | ||
| Genes | 1806 | ||
| mRNA | 1806 | ||
| misc RNA | 25 | ||
| rRNA | 6 | ||
| tRNA | 47 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 98.59 % | ||
| CheckM Contamination | 1.7 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM21237v1 |
| GenBank Assembly Accession | GCA_000212375.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000212375.1 [NCBI] |
| BioSample | SAMN00713611 [NCBI] |
| BioProject | PRJNA51745 [NCBI] |
| Submitter | US DOE Joint Genome Institute (JGI-PGF) |
| Submission Date | 2011-08-24T11:41:13.590 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 879243 |
| Isolation Source | empyema |
| Geo Location | Missing |
