Genome Meta Information: Prevotella nigrescens ATCC 33563 (GCA_000220235.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000220235.1 | ||
| HOMD Taxon-ID | HMT-0693 | ||
| Species Name (in use by HOMD) | Prevotella nigrescens | ||
| Organism Name (as deposited) | HMT-693 Prevotella nigrescens ATCC 33563 | ||
| Strain or Isolate | ATCC 33563 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella; s__Prevotella nigrescens |
||
| Sequencing Technology | 454 | ||
| Genome Coverage | 36.85 | ||
| Contigs |
|
||
| Total Sequence Length | 2,669,193 (bp) | ||
| GC Percentage | 43.83 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/220/235/GCA_000220235.1_ASM22023v1 | ||
| CDS | 2214 | ||
| Genes | 2269 | ||
| mRNA | 2269 | ||
| misc RNA | 7 | ||
| rRNA | 3 | ||
| tRNA | 44 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.98 % | ||
| CheckM Completeness | 99.29 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM22023v1 |
| GenBank Assembly Accession | GCA_000220235.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000220235.1 [NCBI] |
| BioSample | SAMN00262639 [NCBI] |
| BioProject | PRJNA64737 [NCBI] |
| Submitter | Baylor College of Medicine |
| Submission Date | 2011-04-29T22:10:06.737 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | AFPX01 |
| NCBI TaxID | 997352 |
| Isolation Source | |
| Geo Location | not determined |
