Genome Meta Information: Desulfovibrio fairfieldensis 6_1_46AFAA (GCA_000224635.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000224635.1 | ||
| HOMD Taxon-ID | HMT-0605 | ||
| Species Name (in use by HOMD) | Desulfovibrio fairfieldensis | ||
| Organism Name (as deposited) | HMT-605 Desulfovibrio fairfieldensis 6_1_46AFAA | ||
| Strain or Isolate | 6_1_46AFAA | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Desulfovibrio; s__Desulfovibrio fairfieldensis_A |
||
| Sequencing Technology | 454 | ||
| Genome Coverage | 31 | ||
| Contigs |
|
||
| Total Sequence Length | 3,847,181 (bp) | ||
| GC Percentage | 61.27 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/224/635/GCA_000224635.1_Desulfovibrio_sp_6_1_46AFAA_V1 | ||
| CDS | 3275 | ||
| Genes | 3354 | ||
| mRNA | 3354 | ||
| misc RNA | 22 | ||
| rRNA | 6 | ||
| tRNA | 50 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 98.87 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | Desulfovibrio_sp_6_1_46AFAA_V1 |
| GenBank Assembly Accession | GCA_000224635.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000224635.1 [NCBI] |
| BioSample | SAMN02463796 [NCBI] |
| BioProject | PRJNA40021 [NCBI] |
| Submitter | Broad Institute |
| Submission Date | 2013-12-18T11:11:40.617 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | ACWM01 |
| NCBI TaxID | 665942 |
| Isolation Source | missing |
| Geo Location | not determined |
