Genome Meta Information: Rothia mucilaginosa M508 (GCA_000231235.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000231235.1 | ||
| HOMD Taxon-ID | HMT-0681 | ||
| Species Name (in use by HOMD) | Rothia mucilaginosa | ||
| Organism Name (as deposited) | HMT-681 Rothia mucilaginosa clade-681 M508 | ||
| Strain or Isolate | M508 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia; s__Rothia mucilaginosa |
||
| Sequencing Technology | 454 | ||
| Genome Coverage | 40 | ||
| Contigs |
|
||
| Total Sequence Length | 2,313,271 (bp) | ||
| GC Percentage | 59.46 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/231/235/GCA_000231235.1_Roth_muci_M508_V1 | ||
| CDS | 1784 | ||
| Genes | 1854 | ||
| mRNA | 1854 | ||
| misc RNA | 14 | ||
| rRNA | 6 | ||
| tRNA | 49 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 95.23 % | ||
| CheckM Completeness | 99.35 % | ||
| CheckM Contamination | 0.89 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | Roth_muci_M508_V1 |
| GenBank Assembly Accession | GCA_000231235.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000231235.1 [NCBI] |
| BioSample | SAMN02463763 [NCBI] |
| BioProject | PRJNA38789 [NCBI] |
| Submitter | Broad Institute |
| Submission Date | 2013-12-18T11:11:36.883 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | ACSB01 |
| NCBI TaxID | 563033 |
| Isolation Source | missing |
| Geo Location | not determined |
