Genome Meta Information: Prevotella histicola F0411 (GCA_000234055.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000234055.1 | ||
| HOMD Taxon-ID | HMT-0298 | ||
| Species Name (in use by HOMD) | Prevotella histicola | ||
| Organism Name (as deposited) | HMT-298 Prevotella histicola F0411 | ||
| Strain or Isolate | F0411 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella; s__Prevotella histicola |
||
| Sequencing Technology | 454 | ||
| Genome Coverage | 33 | ||
| Contigs |
|
||
| Total Sequence Length | 2,992,428 (bp) | ||
| GC Percentage | 41.28 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/234/055/GCA_000234055.1_Prev_hist_F0411_V1 | ||
| CDS | 2455 | ||
| Genes | 2527 | ||
| mRNA | 2527 | ||
| misc RNA | 13 | ||
| rRNA | 8 | ||
| tRNA | 50 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.79 % | ||
| CheckM Completeness | 98.72 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | Prev_hist_F0411_V1 |
| GenBank Assembly Accession | GCA_000234055.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000234055.1 [NCBI] |
| BioSample | SAMN02463875 [NCBI] |
| BioProject | PRJNA49883 [NCBI] |
| Submitter | Broad Institute |
| Submission Date | 2013-12-18T11:11:49.067 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | AFXP01 |
| NCBI TaxID | 857291 |
| Isolation Source | |
| Geo Location | not determined |
