Genome Meta Information: Johnsonella ignava ATCC 51276 (GCA_000235445.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000235445.1 | ||
| HOMD Taxon-ID | HMT-0635 | ||
| Species Name (in use by HOMD) | Johnsonella ignava | ||
| Organism Name (as deposited) | HMT-635 Johnsonella ignava ATCC 51276 | ||
| Strain or Isolate | ATCC 51276 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Johnsonella; s__Johnsonella ignava |
||
| Sequencing Technology | 454 | ||
| Genome Coverage | 37 | ||
| Contigs |
|
||
| Total Sequence Length | 2,687,075 (bp) | ||
| GC Percentage | 36.09 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/235/445/GCA_000235445.1_John_igna_ATCC_51276_V1 | ||
| CDS | 2325 | ||
| Genes | 2410 | ||
| mRNA | 2410 | ||
| misc RNA | 34 | ||
| rRNA | 3 | ||
| tRNA | 47 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 96.35 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | John_igna_ATCC_51276_V1 |
| GenBank Assembly Accession | GCA_000235445.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000235445.1 [NCBI] |
| BioSample | SAMN02463813 [NCBI] |
| BioProject | PRJNA40693 [NCBI] |
| Submitter | Broad Institute |
| Submission Date | 2013-12-18T11:11:42.490 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | ACZL01 |
| NCBI TaxID | 679200 |
| Isolation Source | missing |
| Geo Location | not determined |
