Genome Meta Information: Campylobacter concisus 10_1_50 (GCA_000238755.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000238755.1 | ||
| HOMD Taxon-ID | HMT-0433 | ||
| Species Name (in use by HOMD) | Campylobacter concisus | ||
| Organism Name (as deposited) | HMT-433 Campylobacter concisus clade-433 10_1_50 | ||
| Strain or Isolate | 10_1_50 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A; s__Campylobacter_A concisus_R |
||
| Sequencing Technology | 454 | ||
| Genome Coverage | 48 | ||
| Contigs |
|
||
| Total Sequence Length | 1,895,632 (bp) | ||
| GC Percentage | 39.73 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/238/755/GCA_000238755.1_Campylobacter_sp_10_1_50_V1 | ||
| CDS | 1906 | ||
| Genes | 1956 | ||
| mRNA | 1956 | ||
| misc RNA | 4 | ||
| rRNA | 2 | ||
| tRNA | 43 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 99.36 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | Campylobacter_sp_10_1_50_V1 |
| GenBank Assembly Accession | GCA_000238755.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000238755.1 [NCBI] |
| BioSample | SAMN02463793 [NCBI] |
| BioProject | PRJNA40015 [NCBI] |
| Submitter | Broad Institute |
| Submission Date | 2013-12-18T11:11:40.257 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | ACWJ01 |
| NCBI TaxID | 665939 |
| Isolation Source | missing |
| Geo Location | not determined |
