Genome Meta Information: Lentilactobacillus parafarraginis F0439 (GCA_000238835.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000238835.1 | ||
| HOMD Taxon-ID | HMT-0418 | ||
| Species Name (in use by HOMD) | Lentilactobacillus parafarraginis | ||
| Organism Name (as deposited) | HMT-418 Lentilactobacillus parafarraginis F0439 | ||
| Strain or Isolate | F0439 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lentilactobacillus; s__Lentilactobacillus parafarraginis |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 184.9 | ||
| Contigs |
|
||
| Total Sequence Length | 2,854,910 (bp) | ||
| GC Percentage | 45.65 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/238/835/GCA_000238835.1_ASM23883v1 | ||
| CDS | 2878 | ||
| Genes | 2972 | ||
| mRNA | 2972 | ||
| misc RNA | 47 | ||
| rRNA | 1 | ||
| tRNA | 45 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.56 % | ||
| CheckM Completeness | 93.26 % | ||
| CheckM Contamination | 0.09 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM23883v1 |
| GenBank Assembly Accession | GCA_000238835.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000238835.1 [NCBI] |
| BioSample | SAMN02299435 [NCBI] |
| BioProject | PRJNA49691 [NCBI] |
| Submitter | Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine |
| Submission Date | 2013-08-02T12:07:40.350 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | AGEY01 |
| NCBI TaxID | 797515 |
| Isolation Source | |
| Geo Location | not determined |
