Genome Meta Information: Prevotella intermedia 17 (GCA_000261025.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000261025.1 | ||
| HOMD Taxon-ID | HMT-0643 | ||
| Species Name (in use by HOMD) | Prevotella intermedia | ||
| Organism Name (as deposited) | HMT-643 Prevotella intermedia 17 | ||
| Strain or Isolate | 17 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella; s__Prevotella intermedia |
||
| Sequencing Technology | Sanger | ||
| Genome Coverage | 7 | ||
| Contigs |
|
||
| Total Sequence Length | 2,699,437 (bp) | ||
| GC Percentage | 43.48 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/261/025/GCA_000261025.1_ASM26102v1 | ||
| CDS | 2322 | ||
| Genes | 2395 | ||
| mRNA | 2395 | ||
| misc RNA | 10 | ||
| rRNA | 12 | ||
| tRNA | 50 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.53 % | ||
| CheckM Completeness | 87.56 % | ||
| CheckM Contamination | 2.45 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM26102v1 |
| GenBank Assembly Accession | GCA_000261025.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000261025.1 [NCBI] |
| BioSample | SAMN02603988 [NCBI] |
| BioProject | PRJNA175 [NCBI] |
| Submitter | TIGR |
| Submission Date | 2014-01-30T14:54:13.553 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 246198 |
| Isolation Source | peridontal pocket |
| Geo Location | |
