Genome Meta Information: Parascardovia denticolens IPLA 20019 (GCA_000269845.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000269845.1 | ||
| HOMD Taxon-ID | HMT-0586 | ||
| Species Name (in use by HOMD) | Parascardovia denticolens | ||
| Organism Name (as deposited) | HMT-586 Parascardovia denticolens IPLA 20019 | ||
| Strain or Isolate | IPLA 20019 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Scardovia; s__Scardovia denticolens |
||
| Sequencing Technology | Illumina HiSeq2000 | ||
| Genome Coverage | 200 | ||
| Contigs |
|
||
| Total Sequence Length | 2,003,311 (bp) | ||
| GC Percentage | 58.51 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/269/845/GCA_000269845.1_ASM26984v1 | ||
| CDS | 1649 | ||
| Genes | 1722 | ||
| mRNA | 1722 | ||
| misc RNA | 5 | ||
| rRNA | 2 | ||
| tRNA | 64 | ||
| tmRNA | 2 | ||
| ANI (Average Nucluotide Identity) | 98.67 % | ||
| CheckM Completeness | 91.45 % | ||
| CheckM Contamination | 2.8 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM26984v1 |
| GenBank Assembly Accession | GCA_000269845.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000269845.1 [NCBI] |
| BioSample | SAMN02470079 [NCBI] |
| BioProject | PRJNA167218 [NCBI] |
| Submitter | IPLA-CSIC |
| Submission Date | 2013-12-19T13:09:55.897 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | AKII01 |
| NCBI TaxID | 1193128 |
| Isolation Source | human breast milk |
| Geo Location | Spain |
