Taxon Table | Genome Table
Genome Meta Information:
Schaalia
sp. HMT-172
ICM58 (GCA_000283035.1)
| HOMD Genome-ID |
GCA_000283035.1
|
| HOMD Taxon-ID |
HMT-0172
|
| Species Name (in use by HOMD) |
Schaalia sp. HMT-172
|
| Organism Name (as deposited) |
HMT-172 Schaalia sp. HMT-172 ICM58
|
| Strain or Isolate |
ICM58
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;
s__Pauljensenia sp000466265 |
| Sequencing Technology |
Illumina
|
| Genome Coverage |
31
|
| Contigs |
Number of Contigs: 239
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
2,390,495 (bp) |
| GC Percentage |
66.51
|
| MAG |
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/283/035/GCA_000283035.1_AspICM58v1.0
|
| CDS |
1989
|
| Genes |
2053
|
| mRNA |
2053
|
| misc RNA |
9
|
| rRNA |
6
|
| tRNA |
48
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
%
|
| CheckM Completeness |
99.3 %
|
| CheckM Contamination |
0.16 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
Difference
between
CheckM and CheckM2
Completeness |
200.0 %
|
| CRISPR-cas |
2 Contigs
[View]
[HOMD FTP]
|
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
AspICM58v1.0
|
| GenBank Assembly Accession |
GCA_000283035.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_000283035.1
[NCBI]
|
| BioSample |
SAMN00828781
[NCBI]
|
| BioProject |
PRJNA78555
[NCBI]
|
| Submitter |
J. Craig Venter Institute
|
| Submission Date |
2012-03-15T11:49:05.170
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
ALIY01
|
| NCBI TaxID |
1105030
|
| Isolation Source |
|
| Geo Location |
not determined
|
