Genome Meta Information: Porphyromonas pasteri F0450 (GCA_000292995.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000292995.1 | ||
| HOMD Taxon-ID | HMT-0279 | ||
| Species Name (in use by HOMD) | Porphyromonas pasteri | ||
| Organism Name (as deposited) | HMT-279 Porphyromonas pasteri F0450 | ||
| Strain or Isolate | F0450 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas; s__Porphyromonas pasteri |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 31 | ||
| Contigs |
|
||
| Total Sequence Length | 2,265,201 (bp) | ||
| GC Percentage | 55.52 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/292/995/GCA_000292995.1_Psp279F0450v1.0 | ||
| CDS | 1747 | ||
| Genes | 1811 | ||
| mRNA | 1811 | ||
| misc RNA | 7 | ||
| rRNA | 7 | ||
| tRNA | 49 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 99 % | ||
| CheckM Contamination | 0.29 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | Psp279F0450v1.0 |
| GenBank Assembly Accession | GCA_000292995.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000292995.1 [NCBI] |
| BioSample | SAMN00792234 [NCBI] |
| BioProject | PRJNA78907 [NCBI] |
| Submitter | J. Craig Venter Institute |
| Submission Date | 2012-02-23T16:16:39.263 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | ALKJ01 |
| NCBI TaxID | 1125723 |
| Isolation Source | |
| Geo Location | not determined |
